Your job contains 1 sequence.
>009912
MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN
QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT
FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV
GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN
DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS
EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG
VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ
RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDE
EDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEQRITKSSV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009912
(522 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2098413 - symbol:HMG "high mobility group" spe... 2086 6.6e-216 1
DICTYBASE|DDB_G0290331 - symbol:ssrp1 "FACT complex subun... 572 2.2e-82 2
ZFIN|ZDB-GENE-031118-9 - symbol:ssrp1a "structure specifi... 795 4.2e-79 1
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR... 789 1.8e-78 1
ZFIN|ZDB-GENE-041008-209 - symbol:ssrp1b "structure speci... 779 2.1e-77 1
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog... 776 4.3e-77 1
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR... 776 4.3e-77 1
UNIPROTKB|F6QYV9 - symbol:SSRP1 "Uncharacterized protein"... 768 3.1e-76 1
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"... 767 3.9e-76 1
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR... 767 3.9e-76 1
UNIPROTKB|I3LLA8 - symbol:SSRP1 "Uncharacterized protein"... 767 3.9e-76 1
MGI|MGI:107912 - symbol:Ssrp1 "structure specific recogni... 766 5.0e-76 1
RGD|621143 - symbol:Ssrp1 "structure specific recognition... 766 5.0e-76 1
UNIPROTKB|Q04931 - symbol:Ssrp1 "FACT complex subunit SSR... 766 5.0e-76 1
FB|FBgn0010278 - symbol:Ssrp "Structure specific recognit... 747 5.1e-74 1
POMBASE|SPBC609.05 - symbol:pob3 "FACT complex subunit Po... 720 3.7e-71 1
CGD|CAL0005561 - symbol:POB3 species:5476 "Candida albica... 692 3.5e-68 1
UNIPROTKB|Q5ALL8 - symbol:POB3 "FACT complex subunit POB3... 692 3.5e-68 1
SGD|S000004534 - symbol:POB3 "Subunit of the heterodimeri... 475 2.6e-67 2
WB|WBGene00001974 - symbol:hmg-4 species:6239 "Caenorhabd... 607 1.6e-61 2
GENEDB_PFALCIPARUM|PF14_0393 - symbol:PF14_0393 "structur... 617 3.1e-60 1
UNIPROTKB|Q8IL56 - symbol:PF14_0393 "Structure specific r... 617 3.1e-60 1
WB|WBGene00001973 - symbol:hmg-3 species:6239 "Caenorhabd... 588 3.6e-57 1
ASPGD|ASPL0000002272 - symbol:AN6687 species:162425 "Emer... 567 6.1e-55 1
UNIPROTKB|J9NYX4 - symbol:SSRP1 "Uncharacterized protein"... 525 1.7e-50 1
UNIPROTKB|E9PMD4 - symbol:SSRP1 "FACT complex subunit SSR... 389 4.4e-36 1
UNIPROTKB|E9PPZ7 - symbol:SSRP1 "FACT complex subunit SSR... 311 1.7e-27 1
>TAIR|locus:2098413 [details] [associations]
symbol:HMG "high mobility group" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
Length = 646
Score = 2086 (739.4 bits), Expect = 6.6e-216, P = 6.6e-216
Identities = 399/497 (80%), Positives = 438/497 (88%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M DG SFNNISL GRGG NPG LKI SG I WKK GGGKAVEVD+ DI V+W KV ++N
Sbjct: 1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
QLGV+TKDGLYYKF GFRDQDV +L++FFQS++G +P+EKQLSVSGRNWGEVDL+GN LT
Sbjct: 61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F+VG KQAFEVSLADVSQTQLQGKNDV LEFHVDDT GANEKDSLMEISFHIPNSNTQFV
Sbjct: 121 FLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFV 180
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDEN PP+QVF D I++MADV G E+AVVTFE IAILTPRGRY+VELHLSFLRLQGQAN
Sbjct: 181 GDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQAN 240
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
DFKIQYSSVVRLFLLPKSNQPHTFVV++LDPPIRKGQT+YPHIV+QFETD VV+SEL +S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSIS 300
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
+EL+NTK+KDKLE SYKGLIHEVFTT+LR LSGAKITKPGKFRS+QDG+AVKSSLKAEDG
Sbjct: 301 DELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDG 360
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
VLYPLEK FFFLPKPPTLILH+EIDYVEFERHAAGG+NMHYFDLLIRLKT+ EHLFRNIQ
Sbjct: 361 VLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQ 420
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE-DDDDAVDPHLERIKNXXXXXXXX 479
RNEYHNL+ FIS KGLKIMNLG T DGVAAVL + DDDDAVDPHL RI+N
Sbjct: 421 RNEYHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAADESDE 480
Query: 480 XXXXXFVADKDDGGSPT 496
+ + DDGGSPT
Sbjct: 481 EDEDFVMGEDDDGGSPT 497
>DICTYBASE|DDB_G0290331 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0035101 "FACT complex" evidence=ISS] [GO:0001672 "regulation of
chromatin assembly or disassembly" evidence=ISS] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000969
PRINTS:PR00887 dictyBase:DDB_G0290331 Pfam:PF03531 GO:GO:0005694
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GenomeReviews:CM000154_GR
EMBL:AAFI02000162 GO:GO:0001672 GO:GO:0035101 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
OMA:FQKDEET RefSeq:XP_635805.1 HSSP:Q04636
ProteinModelPortal:Q54G78 STRING:Q54G78 PRIDE:Q54G78
EnsemblProtists:DDB0216434 GeneID:8627610 KEGG:ddi:DDB_G0290331
ProtClustDB:CLSZ2434425 Uniprot:Q54G78
Length = 527
Score = 572 (206.4 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 120/286 (41%), Positives = 176/286 (61%)
Query: 182 DENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAND 241
+E + F+ IM+ +D+ + +++V F I LTPRGR +E++ +FL+L G+ +D
Sbjct: 213 EEEISALEQFQQTIMNKSDMVSNVGKSLVVFSAIQFLTPRGRIDIEMYPTFLKLHGKTHD 272
Query: 242 FKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSE 301
+K+ Y S+ RLF + +Q H F +++LDPPIR+GQT Y H+V+QF+ + + EL +++
Sbjct: 273 YKVPYESISRLFQFFRPDQKHIFFIISLDPPIRQGQTKYAHLVIQFQAEENIHLELNLTD 332
Query: 302 ELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGV 361
EL K+KD+L P G + + IL+ L+G KIT PG F+S ++K SLKA +G
Sbjct: 333 EL-QQKFKDQLSPIMNGNANALICKILKALTGKKITIPGNFQSDSGANSIKCSLKANEGY 391
Query: 362 LYPLEKSFFFLPKPPTLILHEEIDYVEFERHAA----GGSNMHYFDLLIRLKTEQEHLFR 417
LYPLE+ FFF+ KPPT I E+I +EF R+ A GGSN FDL I LK F
Sbjct: 392 LYPLERCFFFVHKPPTYIKFEDISNIEFARYGAPSVRGGSN-RTFDLSINLKNSTSIQFV 450
Query: 418 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVD 463
NIQR EY +LF+F+ K L I+N T G A ++ +DD D D
Sbjct: 451 NIQREEYPSLFNFLKEKKLSILN----PVTTGPAMIIDDDDSDDDD 492
Score = 273 (101.2 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 71/193 (36%), Positives = 102/193 (52%)
Query: 7 FNNISLGGR-GGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKV-PRTNQLGV 64
FNNISLGGR GT G LK + I+WK GK V DI W +V PR QL +
Sbjct: 11 FNNISLGGRISGTR-GILKFTTNNITWKS-ENGKIETVSSSDIKRANWARVTPRIFQLIL 68
Query: 65 RTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEK-QLSVSGRNWGEVDLNGNMLTFMV 123
K G KF GF++QD + + + +SP E +LS G NWGEV +NG M+ F
Sbjct: 69 SIKGGATVKFDGFKEQDYEVVRKYLSDQYNVSPLEIIELSSKGCNWGEVKVNGPMIQFTT 128
Query: 124 GQ-KQAFEVSLADVSQTQL--QGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
K FE +++VSQ+ + KN++ LEFH D ++ ++++E+ F P ++
Sbjct: 129 DHGKVGFEFPISEVSQSVIGANNKNELTLEFHHDKAMD-DDDETMVEMRFFTPIRPSK-E 186
Query: 181 GDENHPPAQVFRD 193
G+E +V D
Sbjct: 187 GEEGGKEKKVGED 199
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 175/495 (35%), Positives = 265/495 (53%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN+I +G N G+L+ + +K GK + D++ W +V +
Sbjct: 1 MGDTLEFNDIHQEVKGSWNDGRLRFSKQTVVYKSHKTGKVDSIPAPDLSEAQWRRVCLGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + T G YK+ GF++ D ++ FF++N+ + EEK + V G NWG G++L+
Sbjct: 61 GLKLATSTGHIYKYDGFKETDYEKISAFFKANYKVELEEKDMCVKGWNWGTAKFAGSLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F V FE+ L+ VSQ GKN+V +EFH +D + + SLME+ F++P NT
Sbjct: 121 FDVSDSPVFEIPLSSVSQCAT-GKNEVTVEFHQND----DAEVSLMEVRFYVP-PNT--- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GD+ P + F I+S ADV +AV F+ + LTPRGRY + ++ +FL L G+
Sbjct: 172 GDDGSDPVEAFAQNILSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTF 231
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L MS
Sbjct: 232 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLALNMS 291
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E+ + +Y+ KL + G ++E+ + +++ L KIT PG F+ + + KA G
Sbjct: 292 EDEVEKRYEGKLSKNMSGPLYEIVSRVMKALVNRKITVPGNFQGHSGSQCITCAYKASSG 351
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP + EEI V F R G + FD I K + F NI+
Sbjct: 352 LLYPLERGFIYVHKPPVHLRFEEISCVNFAR---GTTTTRSFDFEIETKQNNQFTFSNIE 408
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNXXXXXXXXX 480
R EY LFDF++ K L I N G + G A + D+D D +LER+K
Sbjct: 409 REEYGKLFDFVNAKKLTIKNRGFKEGMKG-AEDYSDSDEDQHDAYLERMKEEGKIREEGD 467
Query: 481 XXXXFVADKDDGGSP 495
D D+ +P
Sbjct: 468 GSDDSEGDSDESFNP 482
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 175/470 (37%), Positives = 261/470 (55%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN+I +G N G+L++ + +K GK + DIA V W +V +
Sbjct: 1 MADTLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
+ + T G YK+ GFR+ + L ++F+S+F + EK L V G NWG V G +L+
Sbjct: 61 GIKLLTNGGHVYKYDGFRETEYDKLFDYFKSHFSVELVEKDLCVKGWNWGSVRFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + AFE+ L++VSQ GKN+V LEFH +D + + SLMEI F++P TQ
Sbjct: 121 FDIGDQPAFELPLSNVSQCTT-GKNEVTLEFHQND----DSEVSLMEIRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
D+ + F ++S ADV +AV F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -DDGGDSVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L MS
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMS 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ KL+ S G ++E+ + +++ L KIT PG F + S KA G
Sbjct: 291 EEEVERRFEGKLKKSMSGCLYEMVSRVMKALVNRKITVPGNFLGHSGSQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEITCVNFAR---GTTTTRSFDFEIETKQGSQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLSIKNRGLKEGMKPAYDDYADSDEDQHDAYLERMK 457
>ZFIN|ZDB-GENE-041008-209 [details] [associations]
symbol:ssrp1b "structure specific recognition
protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
Uniprot:F6NLJ7
Length = 703
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 165/470 (35%), Positives = 256/470 (54%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M+D FN I +G N G+L+ + +K GK + ++ W +V +
Sbjct: 1 MSDTLEFNEIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDTIPVPELTQAQWRRVCLGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
+ + T G YK+ GF+D D+ ++ +F+ N+ + EK + V G NWG NG +L+
Sbjct: 61 GIKLWTSTGHIYKYDGFKDADLEKISEYFKDNYKVELTEKDMCVKGWNWGTAKFNGPLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F V FE+ L+ VSQ GKN+V +EFH +D T SLME+ F++P +
Sbjct: 121 FDVNDSPTFEIPLSSVSQCTT-GKNEVTVEFHQNDDTEV----SLMEVRFYVPPTT---- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDE P + F ++S ADV +AV F + LTPRGRY + ++ +FL L G+
Sbjct: 172 GDEGSDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 231
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F + + L M+
Sbjct: 232 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEETISLTLNMN 291
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E+ + +++ KL + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 292 EDEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 351
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP + EEI V F R G + FD I K ++ F +I+
Sbjct: 352 LLYPLERGFIYVHKPPVHLRFEEIACVNFAR---GTTTTRSFDFEIETKQGNQYTFSSIE 408
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + G + + D+D D +LER+K
Sbjct: 409 REEYGKLFDFVNAKKLSIKNRGFKEGMKGNDDMYSDSDEDQHDAYLERMK 458
>UNIPROTKB|B6ZLK1 [details] [associations]
symbol:SSRP1 "Structure-specific recognition protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
Length = 706
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 170/473 (35%), Positives = 268/473 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN I +G N G+L++ + +K GK + ++A W +V +
Sbjct: 1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G++ FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGEQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE---DDDDAVDPHLERIK 470
R EY LFDF++ K L I N G +K +G+ E D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRG-LK--EGMKQSYDEYADSDEDQHDAYLERMK 457
>UNIPROTKB|Q04678 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
NextBio:20816548 Uniprot:Q04678
Length = 706
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 170/473 (35%), Positives = 268/473 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN I +G N G+L++ + +K GK + ++A W +V +
Sbjct: 1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G++ FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGEQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE---DDDDAVDPHLERIK 470
R EY LFDF++ K L I N G +K +G+ E D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRG-LK--EGMKQSYDEYADSDEDQHDAYLERMK 457
>UNIPROTKB|F6QYV9 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
Uniprot:F6QYV9
Length = 709
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 165/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN++ +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEKVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMK 457
>UNIPROTKB|F1Q2J2 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
Length = 710
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 165/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN++ +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMK 457
>UNIPROTKB|Q08945 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
Length = 709
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 165/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN++ +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMK 457
>UNIPROTKB|I3LLA8 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
Length = 709
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 165/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN++ +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMK 457
>MGI|MGI:107912 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
CleanEx:MM_SSRP1 Genevestigator:Q08943
GermOnline:ENSMUSG00000027067 Uniprot:Q08943
Length = 708
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 166/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN+I +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMK 457
>RGD|621143 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 166/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN+I +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMK 457
>UNIPROTKB|Q04931 [details] [associations]
symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
"Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 166/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN+I +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMK 457
>FB|FBgn0010278 [details] [associations]
symbol:Ssrp "Structure specific recognition protein"
species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
[GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
"nucleolus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
disassembly" evidence=IMP] [GO:0035101 "FACT complex"
evidence=IDA;TAS] [GO:0043621 "protein self-association"
evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
[GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
Length = 723
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 179/470 (38%), Positives = 254/470 (54%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
MTD +N+I+ RG G+LK+ I +K GK ++ DI + K T
Sbjct: 1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTW 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L V TK G+ ++FTGFRD + L F ++ + EK++ V G NWG G++L+
Sbjct: 61 GLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F K FEV L+ VSQ + GKN+V LEFH +D L+E+ FHIP +
Sbjct: 121 FDKESKTIFEVPLSHVSQC-VTGKNEVTLEFHQNDDAPVG----LLEMRFHIPAVES--- 172
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
+E+ P F +MS A V + E++ F I ILTPRGRY +++ +F +L G+
Sbjct: 173 AEED--PVDKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI SV+RLF+LP + F V++LDPPI++GQT Y ++VL F D EL S
Sbjct: 231 DYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFS 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E L KY+ KLE G ++EV +++ L G KIT PG F AV S KA G
Sbjct: 291 EAELRDKYEGKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
LYPLE+ F ++ KPP I EEI V F R +GGS FD + LK H+F +I+
Sbjct: 351 YLYPLERGFIYIHKPPLHIRFEEISSVNFAR--SGGSTRS-FDFEVTLKNGTVHIFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
+ EY LFD+I+ K L + N+G K+ D+++ D +L R+K
Sbjct: 408 KEEYAKLFDYITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLK 457
>POMBASE|SPBC609.05 [details] [associations]
symbol:pob3 "FACT complex subunit Pob3" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=ISO] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IMP] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0034613
"cellular protein localization" evidence=IMP] [GO:0035101 "FACT
complex" evidence=IDA] [GO:0043486 "histone exchange" evidence=IC]
[GO:0043596 "nuclear replication fork" evidence=ISS] [GO:0045899
"positive regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=ISO] [GO:0071276 "cellular
response to cadmium ion" evidence=IMP] [GO:0071585 "detoxification
of cadmium ion" evidence=IMP] InterPro:IPR000969 PRINTS:PR00887
PomBase:SPBC609.05 Pfam:PF03531 GO:GO:0005829 GO:GO:0034613
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
EMBL:CU329671 GO:GO:0071276 GO:GO:0071585 GO:GO:0006281
GO:GO:0006351 GenomeReviews:CU329671_GR GO:GO:0030466 GO:GO:0000790
GO:GO:0030702 GO:GO:0000070 GO:GO:0043596 GO:GO:0043486
GO:GO:0045899 GO:GO:0006334 GO:GO:0035101 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OrthoDB:EOG437VP9 PIR:T40576
RefSeq:NP_596315.1 ProteinModelPortal:O94529 STRING:O94529
EnsemblFungi:SPBC609.05.1 GeneID:2541088 KEGG:spo:SPBC609.05
OMA:FQKDEET NextBio:20802201 Uniprot:O94529
Length = 512
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 160/455 (35%), Positives = 248/455 (54%)
Query: 20 PGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRD 79
PG+L+I + WK + + +I W + R +L + K GF
Sbjct: 19 PGKLRIAPSGLGWKSPSLAEPFTLPISEIRRFCWSRFARGYELKIILKSKDPVSLDGFSQ 78
Query: 80 QDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQT 139
+D+ L N + NF + E+K+ S+ G NWGE + G+ L F V + AFE+ ++ V+ T
Sbjct: 79 EDLDDLINVIKQNFDMGIEQKEFSIKGWNWGEANFLGSELVFDVNSRPAFEIPISAVTNT 138
Query: 140 QLQGKNDVILEFHVDDTTG--ANEKDSLMEISFHIPNSNTQ---FVGDE-NHPPAQVFRD 193
L GKN+V LEF D + + D L+E+ ++P + + G+E A +F +
Sbjct: 139 NLSGKNEVALEFSTTDDKQIPSAQVDELVEMRLYVPGTTAKEDAADGEEVEQNAANLFYE 198
Query: 194 KIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLF 253
+ AD+G +A+V+F I +LTPRGRY ++++ + +RL+G+ D+K++YSS+ LF
Sbjct: 199 SLKERADIGQAAGDAIVSFSEILLLTPRGRYDIDMYETCMRLRGKTYDYKVEYSSINSLF 258
Query: 254 LLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLE 313
LLPK ++ H V+ L+PP+R+GQT YP +V QF D ++ +L + E +L KY DK++
Sbjct: 259 LLPKPDEQHVVFVIGLEPPLRQGQTRYPFLVTQFVRDEDMEVDLNIEETVLKEKYADKVK 318
Query: 314 PSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLP 373
SY EV + I RGL+G K+T P +F S + AVK S KA +G LY L+KSF F+P
Sbjct: 319 ASYDQPAFEVVSQIFRGLTGRKVTTPAEFLSHEGHAAVKCSYKANEGQLYCLDKSFLFIP 378
Query: 374 KPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISG 433
KP L+ +I V R S FDL L++ + F NI R E L F+
Sbjct: 379 KPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINRVEQSALVAFLES 438
Query: 434 KGLKIMN-LGDMKTTDGVAAVLQEDDDDAVDPHLE 467
K +KI N L D +T + +D+D+ D +E
Sbjct: 439 KQIKIHNDLAD-ETQQTLLTSALDDEDEEGDEEME 472
>CGD|CAL0005561 [details] [associations]
symbol:POB3 species:5476 "Candida albicans" [GO:0031298
"replication fork protection complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0035101 "FACT complex" evidence=IEA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0030466 "chromatin silencing
at silent mating-type cassette" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0034724 "DNA replication-independent
nucleosome organization" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0030702 "chromatin silencing at
centromere" evidence=IEA] [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] InterPro:IPR000969 PRINTS:PR00887
CGD:CAL0005561 Pfam:PF03531 GO:GO:0005634 GO:GO:0005694
GO:GO:0071216 GO:GO:0036180 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 GO:GO:0009267 EMBL:AACQ01000008 EMBL:AACQ01000007
GO:GO:0036170 InterPro:IPR013719 Pfam:PF08512 RefSeq:XP_722461.1
RefSeq:XP_722602.1 ProteinModelPortal:Q5ALL8 SMR:Q5ALL8
STRING:Q5ALL8 GeneID:3635827 GeneID:3635964 KEGG:cal:CaO19.1560
KEGG:cal:CaO19.9133 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
Uniprot:Q5ALL8
Length = 538
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 166/477 (34%), Positives = 253/477 (53%)
Query: 7 FNNISLG-GRGGTNPGQLKIYSGKISWK-KLGGGKAVE---VDKVDIAGVTWMKVPRTNQ 61
F I L R G G+++I + WK G + + + +I +W + + +
Sbjct: 6 FEKIYLNQSRAG---GRMRIAESGLGWKASASSGSTSQPFLLPREEILIASWSRGSKGYE 62
Query: 62 LGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTF 121
L V+TK+ GF D L NF I+ E ++ S+ G NWG+ DL N L F
Sbjct: 63 LRVQTKNKGVVSLDGFDHDDFTQLKQELTRNFHINLEHREHSLRGWNWGKTDLARNELIF 122
Query: 122 MVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNS---NTQ 178
V K AFE+ +D+S + L GKN+V LEF++D+ +E ++E+ F++P + T
Sbjct: 123 NVNNKPAFEIPYSDISNSNLTGKNEVALEFNLDNNKNGDE---IVEMRFYVPGTIENETT 179
Query: 179 FVGDENH------------PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSV 226
V +E + AQ F +++ AD+G EA+V+F + LTPRGRY +
Sbjct: 180 IVKNETNGDVIEEAVVNETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDI 239
Query: 227 ELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQ 286
+++ S LRL+G+ D+KIQY + R+F LPK ++ H +V+ +DPP+R+GQT YP +VLQ
Sbjct: 240 DMYPSSLRLRGKTYDYKIQYEQIERIFSLPKPDETHHLIVLQIDPPLRQGQTRYPFLVLQ 299
Query: 287 FETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQ 346
F D + EL +S+E KYKD+L+ +Y + V + LRGL+ K+ PG F+S
Sbjct: 300 FVKDEETELELNVSDEDFEKKYKDRLKKTYDAPTNVVMSHCLRGLTERKLITPGAFQSRY 359
Query: 347 DGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLI 406
V S+KA +G L+PL++ F F+ KP I + EI V R G S FDL +
Sbjct: 360 LQAGVPCSVKASEGYLFPLDRCFLFVTKPTLYIPYSEISSVVMSRTGGGVSASRTFDLEV 419
Query: 407 R-LKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE--DDDD 460
+ + Q H+F NI R E + F KG+K+ N + A+ QE DDDD
Sbjct: 420 NVIGSNQPHVFSNIDREEQEFIESFCKEKGVKVKNEEKIAKARLAKALEQEANDDDD 476
>UNIPROTKB|Q5ALL8 [details] [associations]
symbol:POB3 "FACT complex subunit POB3" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000969 PRINTS:PR00887 CGD:CAL0005561 Pfam:PF03531
GO:GO:0005634 GO:GO:0005694 GO:GO:0071216 GO:GO:0036180
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0009267
EMBL:AACQ01000008 EMBL:AACQ01000007 GO:GO:0036170
InterPro:IPR013719 Pfam:PF08512 RefSeq:XP_722461.1
RefSeq:XP_722602.1 ProteinModelPortal:Q5ALL8 SMR:Q5ALL8
STRING:Q5ALL8 GeneID:3635827 GeneID:3635964 KEGG:cal:CaO19.1560
KEGG:cal:CaO19.9133 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
Uniprot:Q5ALL8
Length = 538
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 166/477 (34%), Positives = 253/477 (53%)
Query: 7 FNNISLG-GRGGTNPGQLKIYSGKISWK-KLGGGKAVE---VDKVDIAGVTWMKVPRTNQ 61
F I L R G G+++I + WK G + + + +I +W + + +
Sbjct: 6 FEKIYLNQSRAG---GRMRIAESGLGWKASASSGSTSQPFLLPREEILIASWSRGSKGYE 62
Query: 62 LGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTF 121
L V+TK+ GF D L NF I+ E ++ S+ G NWG+ DL N L F
Sbjct: 63 LRVQTKNKGVVSLDGFDHDDFTQLKQELTRNFHINLEHREHSLRGWNWGKTDLARNELIF 122
Query: 122 MVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNS---NTQ 178
V K AFE+ +D+S + L GKN+V LEF++D+ +E ++E+ F++P + T
Sbjct: 123 NVNNKPAFEIPYSDISNSNLTGKNEVALEFNLDNNKNGDE---IVEMRFYVPGTIENETT 179
Query: 179 FVGDENH------------PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSV 226
V +E + AQ F +++ AD+G EA+V+F + LTPRGRY +
Sbjct: 180 IVKNETNGDVIEEAVVNETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDI 239
Query: 227 ELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQ 286
+++ S LRL+G+ D+KIQY + R+F LPK ++ H +V+ +DPP+R+GQT YP +VLQ
Sbjct: 240 DMYPSSLRLRGKTYDYKIQYEQIERIFSLPKPDETHHLIVLQIDPPLRQGQTRYPFLVLQ 299
Query: 287 FETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQ 346
F D + EL +S+E KYKD+L+ +Y + V + LRGL+ K+ PG F+S
Sbjct: 300 FVKDEETELELNVSDEDFEKKYKDRLKKTYDAPTNVVMSHCLRGLTERKLITPGAFQSRY 359
Query: 347 DGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLI 406
V S+KA +G L+PL++ F F+ KP I + EI V R G S FDL +
Sbjct: 360 LQAGVPCSVKASEGYLFPLDRCFLFVTKPTLYIPYSEISSVVMSRTGGGVSASRTFDLEV 419
Query: 407 R-LKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE--DDDD 460
+ + Q H+F NI R E + F KG+K+ N + A+ QE DDDD
Sbjct: 420 NVIGSNQPHVFSNIDREEQEFIESFCKEKGVKVKNEEKIAKARLAKALEQEANDDDD 476
>SGD|S000004534 [details] [associations]
symbol:POB3 "Subunit of the heterodimeric FACT complex
(Spt16p-Pob3p)" species:4932 "Saccharomyces cerevisiae" [GO:0031298
"replication fork protection complex" evidence=IDA] [GO:0031491
"nucleosome binding" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0035101 "FACT
complex" evidence=IGI;IDA;IPI] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IC] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0034724 "DNA
replication-independent nucleosome organization" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IGI;IMP;IPI]
[GO:0000790 "nuclear chromatin" evidence=IDA] InterPro:IPR000969
PRINTS:PR00887 SGD:S000004534 Pfam:PF03531 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
EMBL:BK006946 GO:GO:0000790 GO:GO:0034401 GO:GO:0045899
GO:GO:0031298 EMBL:Z38114 GeneTree:ENSGT00700000104547
GO:GO:0035101 InterPro:IPR013719 Pfam:PF08512 GO:GO:0034724
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OrthoDB:EOG437VP9 OMA:FQKDEET PIR:S48328 RefSeq:NP_013642.1
PDB:2GCJ PDB:2GCL PDB:3F5R PDBsum:2GCJ PDBsum:2GCL PDBsum:3F5R
ProteinModelPortal:Q04636 SMR:Q04636 DIP:DIP-4083N IntAct:Q04636
MINT:MINT-559116 STRING:Q04636 PaxDb:Q04636 PeptideAtlas:Q04636
EnsemblFungi:YML069W GeneID:854933 KEGG:sce:YML069W CYGD:YML069w
EvolutionaryTrace:Q04636 NextBio:977968 Genevestigator:Q04636
GermOnline:YML069W Uniprot:Q04636
Length = 552
Score = 475 (172.3 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 92/279 (32%), Positives = 159/279 (56%)
Query: 183 ENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDF 242
E A+ F +++ AD+G +A+V+F+ + TPRGRY ++++ + +RL+G+ ++
Sbjct: 216 EEKSMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEY 275
Query: 243 KIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEE 302
K+Q+ + R+ LPK++ H +V+ ++PP+R+GQT YP +VLQF+ D + +L + +E
Sbjct: 276 KLQHRQIQRIVSLPKADDIHHLLVLAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDE 335
Query: 303 LLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVL 362
YKDKL+ Y H V + +L+GL+ ++ PG+++S D AV S KA +G L
Sbjct: 336 DYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYL 395
Query: 363 YPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQR 421
YPL+ +FFFL KP I ++ V R ++ FDL + L++ + F NI +
Sbjct: 396 YPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISK 455
Query: 422 NEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDD 460
E L F+ K L++ N D + + + L D D+
Sbjct: 456 EEQQLLEQFLKSKNLRVKN-EDREVQERLQTALGSDSDE 493
Score = 227 (85.0 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 57/201 (28%), Positives = 94/201 (46%)
Query: 21 GQLKIYSGKISWK-KLGGGKAVE-------VDKVDIAGVTWMKVPRTNQLGVRTKDGLYY 72
G+ +I + WK GG A + +++ V W + R L + TK+
Sbjct: 17 GRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 76
Query: 73 KFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVS 132
+ GF D + N F F I E+++ S+ G NWG+ DL N + F + K FE+
Sbjct: 77 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIP 136
Query: 133 LADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFR 192
A ++ T L KN+V +EF++ D D L+E+ F+IP V DEN +
Sbjct: 137 YARINNTNLTSKNEVGIEFNIQDEEYQPAGDELVEMRFYIPGVIQTNV-DENMTKKEESS 195
Query: 193 DKIMSMADVGAGGEEAVVTFE 213
++++ + GA GE+ + E
Sbjct: 196 NEVVPKKEDGAEGEDVQMAVE 216
>WB|WBGene00001974 [details] [associations]
symbol:hmg-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
NextBio:890908 Uniprot:P41848
Length = 697
Score = 607 (218.7 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 140/445 (31%), Positives = 234/445 (52%)
Query: 21 GQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQ 80
G LK+ +++K GGK+V V DI + W K+ L V DG ++F GF+D
Sbjct: 20 GTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDT 79
Query: 81 DVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQ 140
D+ + +F SN+ S ++ L + G N+G+ ++ G + F K FE+ +VS
Sbjct: 80 DLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVSNV- 138
Query: 141 LQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMAD 200
+ KN+ +LEFH +D + K LME+ FH+P +E+ + F+ +++ A
Sbjct: 139 IANKNEAVLEFHQND----DSKVQLMEMRFHMP---IDLENEEDADKVEEFKKAVLAYAG 191
Query: 201 VGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQ 260
+ A E+ + I TPRGRY ++++ + + L G+ D+KI S+ RLFL+P +
Sbjct: 192 LEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRLFLVPHKDG 251
Query: 261 PHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLI 320
H + V++L+PPIR+GQT Y +++ +F D EL +++E L + L G I
Sbjct: 252 RHVYFVLSLNPPIRQGQTRYSYLIFEFGKDEEQDLELALTDEQLESS-NGNLRRDMTGPI 310
Query: 321 HEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLIL 380
+E + + + + KIT PG+F + A++ + + G+LYP+EK F F+ KP I
Sbjct: 311 YETISILFKSICNLKITVPGRFLGSSGTPAIQCTHRQNPGLLYPMEKGFLFIHKPAMYIR 370
Query: 381 HEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMN 440
EEI F R + G+ FD I LK F +++ E + LFD+++ K +KI N
Sbjct: 371 FEEISSCHFAR-SDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENNKLFDYLNKKNIKIRN 429
Query: 441 LGDMKTTDGVAAVLQEDDDDAVDPH 465
++ T VA + DD +DP+
Sbjct: 430 SQRVENT--VA----DSSDDEIDPY 448
Score = 40 (19.1 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 13 GGRGGTNPGQLKIYSGKISWKKLGGGKAVEV 43
G +GG + K+ W+KLG + V
Sbjct: 33 GDKGGKSVNVTGSDIDKLKWQKLGNKPGLRV 63
>GENEDB_PFALCIPARUM|PF14_0393 [details] [associations]
symbol:PF14_0393 "structure specific
recognition protein, putative" species:5833 "Plasmodium falciparum"
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000969 PRINTS:PR00887
Pfam:PF03531 GO:GO:0005634 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003697 EMBL:AE014187 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 OMA:FQKDEET ProtClustDB:CLSZ2434425
RefSeq:XP_001348567.1 ProteinModelPortal:Q8IL56 IntAct:Q8IL56
MINT:MINT-1564957 PRIDE:Q8IL56 EnsemblProtists:PF14_0393:mRNA
GeneID:811975 KEGG:pfa:PF14_0393 EuPathDB:PlasmoDB:PF3D7_1441400
HOGENOM:HOG000282144 Uniprot:Q8IL56
Length = 506
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 136/456 (29%), Positives = 241/456 (52%)
Query: 11 SLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVP-RTNQLGVR---T 66
++ G GG++ G ++ + + WK + DI W+K N+L ++ +
Sbjct: 18 NIRGFGGSDFGSFRMSNEFLGWKNKKTNNVYQYKCSDIDEGCWIKTSYNNNRLHLKLGES 77
Query: 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126
K+ + F GF D++V +T FQ F I ++++ G NWGE L + L F + K
Sbjct: 78 KENIIIYFDGFPDRNVNEITQHFQKYFNIRLNNRKIATKGWNWGEFKLENSNLCFDIDNK 137
Query: 127 QAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHP 186
AF + +++Q +Q K D+ +EF D+ +D L EI F+ P+ N DEN
Sbjct: 138 YAFNLPTNNINQLNVQIKTDIAMEFKNDENNNKGNEDFLAEIRFYYPHEN-----DENQN 192
Query: 187 PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY 246
Q ++ ++ ++G E++ + I +L PRGRY +E++ S +L G++ DF IQY
Sbjct: 193 -FQNLKNDLLEKVNIGDTKSESIASLSNIPLLVPRGRYDIEMYSSTFKLHGKSYDFNIQY 251
Query: 247 SSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNT 306
+++ ++ L+PKSN ++ +L +++GQT YP I++Q D ++ ++ S+E++ T
Sbjct: 252 TNINKMILVPKSNSNQYVLIFSLSNKMKQGQTEYPFILIQLNNDDDMELDISASDEVM-T 310
Query: 307 KYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLE 366
KYK LE + G H+V T + L + PG +R++++ + + S +A G LYPL
Sbjct: 311 KYK--LEKTISGKAHDVVTKLFTALVNKNVIVPGDYRTSKNQHGITCSYRAASGQLYPLN 368
Query: 367 KSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMH-YFDLLIRLKTEQEHLFRNIQRNEYH 425
K F F+ KP LI ++I + F+R G N H +F L+I+ K + + NI ++EY+
Sbjct: 369 KYFLFIVKPVILISFDDIVTLSFQR--TGNINQHRFFSLIIKHKRGMSYEYTNIDKSEYN 426
Query: 426 NLFDFISGKGLKIMN-LGDMKTTDGVAAVLQEDDDD 460
L F+ K + I + D++ L E D++
Sbjct: 427 PLLTFLKSKNINIQDDANDLEKKQDFHNELDESDEE 462
>UNIPROTKB|Q8IL56 [details] [associations]
symbol:PF14_0393 "Structure specific recognition protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000969 PRINTS:PR00887
Pfam:PF03531 GO:GO:0005634 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003697 EMBL:AE014187 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 OMA:FQKDEET ProtClustDB:CLSZ2434425
RefSeq:XP_001348567.1 ProteinModelPortal:Q8IL56 IntAct:Q8IL56
MINT:MINT-1564957 PRIDE:Q8IL56 EnsemblProtists:PF14_0393:mRNA
GeneID:811975 KEGG:pfa:PF14_0393 EuPathDB:PlasmoDB:PF3D7_1441400
HOGENOM:HOG000282144 Uniprot:Q8IL56
Length = 506
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 136/456 (29%), Positives = 241/456 (52%)
Query: 11 SLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVP-RTNQLGVR---T 66
++ G GG++ G ++ + + WK + DI W+K N+L ++ +
Sbjct: 18 NIRGFGGSDFGSFRMSNEFLGWKNKKTNNVYQYKCSDIDEGCWIKTSYNNNRLHLKLGES 77
Query: 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126
K+ + F GF D++V +T FQ F I ++++ G NWGE L + L F + K
Sbjct: 78 KENIIIYFDGFPDRNVNEITQHFQKYFNIRLNNRKIATKGWNWGEFKLENSNLCFDIDNK 137
Query: 127 QAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHP 186
AF + +++Q +Q K D+ +EF D+ +D L EI F+ P+ N DEN
Sbjct: 138 YAFNLPTNNINQLNVQIKTDIAMEFKNDENNNKGNEDFLAEIRFYYPHEN-----DENQN 192
Query: 187 PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY 246
Q ++ ++ ++G E++ + I +L PRGRY +E++ S +L G++ DF IQY
Sbjct: 193 -FQNLKNDLLEKVNIGDTKSESIASLSNIPLLVPRGRYDIEMYSSTFKLHGKSYDFNIQY 251
Query: 247 SSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNT 306
+++ ++ L+PKSN ++ +L +++GQT YP I++Q D ++ ++ S+E++ T
Sbjct: 252 TNINKMILVPKSNSNQYVLIFSLSNKMKQGQTEYPFILIQLNNDDDMELDISASDEVM-T 310
Query: 307 KYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLE 366
KYK LE + G H+V T + L + PG +R++++ + + S +A G LYPL
Sbjct: 311 KYK--LEKTISGKAHDVVTKLFTALVNKNVIVPGDYRTSKNQHGITCSYRAASGQLYPLN 368
Query: 367 KSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMH-YFDLLIRLKTEQEHLFRNIQRNEYH 425
K F F+ KP LI ++I + F+R G N H +F L+I+ K + + NI ++EY+
Sbjct: 369 KYFLFIVKPVILISFDDIVTLSFQR--TGNINQHRFFSLIIKHKRGMSYEYTNIDKSEYN 426
Query: 426 NLFDFISGKGLKIMN-LGDMKTTDGVAAVLQEDDDD 460
L F+ K + I + D++ L E D++
Sbjct: 427 PLLTFLKSKNINIQDDANDLEKKQDFHNELDESDEE 462
>WB|WBGene00001973 [details] [associations]
symbol:hmg-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
Length = 689
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 137/464 (29%), Positives = 236/464 (50%)
Query: 7 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRT 66
F + + G G L + I++ GGK+V + D+ + W K+ L V
Sbjct: 6 FKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKPGLRVGL 65
Query: 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126
DG ++F GF D D+ + +F SN+ S + L ++G N+G+ D+ G + F +
Sbjct: 66 SDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIEFSWENE 125
Query: 127 QAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHP 186
FE+ +VS + KN+ ILEFH ++ + K LME+ FH+P +E+
Sbjct: 126 PIFEIPCTNVSNV-IANKNEAILEFHQNEQS----KVQLMEMRFHMP---VDLENEEDTD 177
Query: 187 PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY 246
+ F+ +++ A + A E+ + I TPRGRY ++++ + + L G+ D+KI
Sbjct: 178 KVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPV 237
Query: 247 SSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNT 306
++ RLFL+P + + V++L+PPIR+GQT Y +++ +F D EL +++E L+
Sbjct: 238 KTINRLFLVPHKDGRQVYFVLSLNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQLDY 297
Query: 307 KYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLE 366
+ L+ G I+E + + + + K+T PG+F + A++ + + G+LYP+E
Sbjct: 298 -FNGNLQREMTGPIYETISILFKSICNLKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPME 356
Query: 367 KSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHN 426
K F F+ KP I EEI F R + G+ FD I LKT F + + E +
Sbjct: 357 KGFLFIQKPVMYIRFEEISSCHFAR-SDSGTVTRTFDFEIDLKTGSSLTFSAMDKEENNK 415
Query: 427 LFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
LFD+++ K +KI N D +A D+D +DP+ +K
Sbjct: 416 LFDYLNKKEIKIRN---SHRIDNKSAGYGSSDEDDIDPYKSTVK 456
>ASPGD|ASPL0000002272 [details] [associations]
symbol:AN6687 species:162425 "Emericella nidulans"
[GO:0000070 "mitotic sister chromatid segregation" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0035101 "FACT
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF03531 GO:GO:0005634
GO:GO:0005694 GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
EMBL:BN001301 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 EMBL:AACD01000111 RefSeq:XP_664291.1
STRING:Q5AYE3 GeneID:2870474 KEGG:ani:AN6687.2 HOGENOM:HOG000180790
OMA:PVEVKKG OrthoDB:EOG437VP9 Uniprot:Q5AYE3
Length = 575
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 133/364 (36%), Positives = 201/364 (55%)
Query: 98 EEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVI-LEFHVDDT 156
E +++G+N EV + ++ G K A S + + G ++++ + F++ T
Sbjct: 130 EISNTNLAGKN--EVAVELSLSVDPNGSKPAG--STKNRGRKAAAGPDELVEMRFYIPGT 185
Query: 157 TGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIA 216
E E + + G+E + A +F + +M A++G + TF +
Sbjct: 186 AVKTENGIKGENADEKNGGEGEENGEEQNA-ANLFYELLMEKAEIGDVAGDTFATFLDVL 244
Query: 217 ILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKG 276
LTPRGR+ ++++ S RL+G+ D+KIQYSS+ + FLLPK++ HT +V+ L+PP+R+G
Sbjct: 245 HLTPRGRFDIDMYESSFRLRGKTYDYKIQYSSIKKFFLLPKNDDTHTLIVLGLEPPLRQG 304
Query: 277 QTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKI 336
QT YP +V+Q + D + EL M+EELL T+YKDKLEP Y+ IH+V T I RGLSG K+
Sbjct: 305 QTRYPFLVMQLKLDEEISLELNMTEELLETRYKDKLEPRYEEPIHQVITKIFRGLSGKKV 364
Query: 337 TKPGKFRSAQDGYA-VKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAG 395
P K + G++ VK S+KA +G+LY L+KS F+PKP T I E + V R
Sbjct: 365 IMPSKDFVSHHGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYIQMENVAVVTMSRVGGA 424
Query: 396 GSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVL 454
S FD+ + LK EH F NI R E L +F K ++I N T +AA L
Sbjct: 425 ISASRTFDITVSLKAGMGEHQFSNINREEQQPLEEFFKAKNIRIKNEMSDDTNALIAAAL 484
Query: 455 QEDD 458
DD
Sbjct: 485 DNDD 488
Score = 207 (77.9 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 46/160 (28%), Positives = 79/160 (49%)
Query: 6 SFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVR 65
SF+NI L PG+ K+ + W+ GGG +D +I W + + +L +
Sbjct: 3 SFDNIYLDL--SNQPGKCKLAETGLGWRPSGGGDTFTLDSSNIGAAQWSRAAKGYELKIL 60
Query: 66 TKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQ 125
++ + GF +D L+ F+ +GI+ E ++ ++ G NWG+ + L F V
Sbjct: 61 SRSSGVIQLDGFDQEDFERLSKAFKIWYGINVESREHALRGWNWGKAEFTKAELAFNVQN 120
Query: 126 KQAFEVSLADVSQTQLQGKNDVILEFHVD-DTTGANEKDS 164
+ AFEV +++S T L GKN+V +E + D G+ S
Sbjct: 121 RPAFEVPYSEISNTNLAGKNEVAVELSLSVDPNGSKPAGS 160
>UNIPROTKB|J9NYX4 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
Length = 551
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 110/305 (36%), Positives = 173/305 (56%)
Query: 166 MEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYS 225
ME+ F++P TQ ++ P + F ++S ADV +A+ F + LTPRGRY
Sbjct: 1 MEVRFYVPP--TQ---EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYD 55
Query: 226 VELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVL 285
+ ++ +FL L G+ D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L
Sbjct: 56 IRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLIL 115
Query: 286 QFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSA 345
F D + L M+EE + +++ +L + G ++E+ + +++ L KIT PG F+
Sbjct: 116 LFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGH 175
Query: 346 QDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLL 405
+ S KA G+LYPLE+ F ++ KPP I +EI +V F R G + FD
Sbjct: 176 SGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFE 232
Query: 406 IRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPH 465
I K ++ F +I+R EY LFDF++ K L I N G + + + D+D D +
Sbjct: 233 IETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAY 292
Query: 466 LERIK 470
LER+K
Sbjct: 293 LERMK 297
>UNIPROTKB|E9PMD4 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF03531 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 EMBL:AP000781 InterPro:IPR024954
HGNC:HGNC:11327 ChiTaRS:SSRP1 IPI:IPI00985291
ProteinModelPortal:E9PMD4 SMR:E9PMD4 PRIDE:E9PMD4
Ensembl:ENST00000526696 ArrayExpress:E9PMD4 Bgee:E9PMD4
Uniprot:E9PMD4
Length = 192
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 83/201 (41%), Positives = 122/201 (60%)
Query: 99 EKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTG 158
EK L V G NWG V G +L+F +G + FE+ L++VSQ GKN+V LEFH +D
Sbjct: 2 EKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND--- 57
Query: 159 ANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAIL 218
+ + SLME+ F++P TQ ++ P + F ++S ADV +A+ F + L
Sbjct: 58 -DAEVSLMEVRFYVPP--TQ---EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCL 111
Query: 219 TPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQT 278
TPRGRY + ++ +FL L G+ D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT
Sbjct: 112 TPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQT 171
Query: 279 LYPHIVLQFETDYVVQSELLM 299
Y ++L F D + L M
Sbjct: 172 RYHFLILLFSKDEDISLTLNM 192
>UNIPROTKB|E9PPZ7 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR000969 PRINTS:PR00887 Pfam:PF03531
GO:GO:0005634 GO:GO:0003677 EMBL:AP000781 InterPro:IPR024954
HGNC:HGNC:11327 ChiTaRS:SSRP1 IPI:IPI00981139
ProteinModelPortal:E9PPZ7 SMR:E9PPZ7 PRIDE:E9PPZ7
Ensembl:ENST00000529002 UCSC:uc010rjq.1 ArrayExpress:E9PPZ7
Bgee:E9PPZ7 Uniprot:E9PPZ7
Length = 154
Score = 311 (114.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 67/162 (41%), Positives = 99/162 (61%)
Query: 99 EKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTG 158
EK L V G NWG V G +L+F +G + FE+ L++VSQ GKN+V LEFH +D
Sbjct: 2 EKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND--- 57
Query: 159 ANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAIL 218
+ + SLME+ F++P TQ ++ P + F ++S ADV +A+ F + L
Sbjct: 58 -DAEVSLMEVRFYVPP--TQ---EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCL 111
Query: 219 TPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQ 260
TPRGRY + ++ +FL L G+ D+KI Y++V+RLFLLP +Q
Sbjct: 112 TPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQ 153
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 522 493 0.00083 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 596 (63 KB)
Total size of DFA: 268 KB (2142 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.07u 0.09s 41.16t Elapsed: 00:00:02
Total cpu time: 41.08u 0.09s 41.17t Elapsed: 00:00:02
Start: Sat May 11 12:54:19 2013 End: Sat May 11 12:54:21 2013