BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009912
(522 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/513 (85%), Positives = 472/513 (92%), Gaps = 1/513 (0%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
MTDG FNNI+LG RGGTNPGQ+KIYSG I WK+ GGGK ++VDK DI GVTWMKVP+TN
Sbjct: 1 MTDGHLFNNITLGXRGGTNPGQIKIYSGGILWKRQGGGKTIDVDKTDIMGVTWMKVPKTN 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
QLGV+ KDGL YKFTGFRDQDV +LTNFFQ+ FGI+ EEKQLSV+GRNWGEVDLNGNML
Sbjct: 61 QLGVQIKDGLLYKFTGFRDQDVVSLTNFFQNTFGITVEEKQLSVTGRNWGEVDLNGNMLA 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
FMVG KQAFEVSLADVSQT LQGKNDVILEFHVDDTTGANEKDSLME+SFHIP+SNTQFV
Sbjct: 121 FMVGSKQAFEVSLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFV 180
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDEN P AQVFRDKIMSMADVG GGE+AVVTF+GIAILTPRGRYSVELHLSFLRLQGQAN
Sbjct: 181 GDENRPSAQVFRDKIMSMADVGVGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAN 240
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
DFKIQYSSVVRLFLLPKSNQPHTFV+++LDPPIRKGQTLYPHIV+QFETD VV SEL +S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDTVVDSELAIS 300
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E+L N+KYKDKLE SYKGLIHEVFTT+LRGLSG K+TKPG FRS QDGYAVKSSLKAEDG
Sbjct: 301 EDLYNSKYKDKLELSYKGLIHEVFTTVLRGLSGGKVTKPGNFRSCQDGYAVKSSLKAEDG 360
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLK+EQEHLFRNIQ
Sbjct: 361 ILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQ 420
Query: 421 RNEYHNLFDFISGKGLKIMNLGD-MKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESD 479
RNEYHNL+ FIS KGLKIMN+ D + GVA VL+ DDDDAVDPHLERI+NEAGGDESD
Sbjct: 421 RNEYHNLYGFISSKGLKIMNIADAQQAVGGVAKVLENDDDDAVDPHLERIRNEAGGDESD 480
Query: 480 EEDSDFVADKDDGGSPTDDSGEEDSDASESGGE 512
EEDSDFV DKDDGGSPTDDSG + SDAS+SGGE
Sbjct: 481 EEDSDFVIDKDDGGSPTDDSGADVSDASQSGGE 513
>sp|Q39601|SSRP1_CATRO FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2
SV=1
Length = 639
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/513 (85%), Positives = 470/513 (91%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M DG FNNI+LGGRGGTNPGQL+++SG I WKK GG KAVEVDK D+ G+TWMKVPR+N
Sbjct: 1 MADGHLFNNITLGGRGGTNPGQLRVHSGGILWKKQGGAKAVEVDKSDMVGLTWMKVPRSN 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
QLGVR KDGL+YKFTGFRDQDVA+LT++ QS GI+PEEKQLSVSG+NWGEVDLNGNMLT
Sbjct: 61 QLGVRIKDGLFYKFTGFRDQDVASLTSYLQSTCGITPEEKQLSVSGKNWGEVDLNGNMLT 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F+VG KQAFEVSLADV+QTQLQGKNDV+LEF K+SLMEISFH+PNSNTQFV
Sbjct: 121 FLVGSKQAFEVSLADVAQTQLQGKNDVMLEFMWMILLEQMRKNSLMEISFHVPNSNTQFV 180
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDEN PPAQVFRDKIMSMADVGAGGE+AVVTFEGIAILTPRGRY+VELHLSFLRLQGQAN
Sbjct: 181 GDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYNVELHLSFLRLQGQAN 240
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVV S L +S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVDSSLSIS 300
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E+LL+TKYKDKLEP+YKGLIHEVFT ILRGLSGAK+T+PGKFRS QDGYAVKSSLKAEDG
Sbjct: 301 EDLLSTKYKDKLEPTYKGLIHEVFTMILRGLSGAKVTRPGKFRSCQDGYAVKSSLKAEDG 360
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ
Sbjct: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDE 480
RNEYHNLFDFIS KGLKIMNLG K D + AVLQEDDDDAVDPHLERIKNEAGGDESDE
Sbjct: 421 RNEYHNLFDFISSKGLKIMNLGADKAADAITAVLQEDDDDAVDPHLERIKNEAGGDESDE 480
Query: 481 EDSDFVADKDDGGSPTDDSGEEDSDASESGGEK 513
ED DFVAD DD GSPTDDSGE +SD S+SG E+
Sbjct: 481 EDEDFVADIDDEGSPTDDSGEGESDGSDSGNEE 513
>sp|Q9LGR0|SSP1A_ORYSJ FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica
GN=SSRP1-A PE=2 SV=1
Length = 641
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/518 (77%), Positives = 459/518 (88%), Gaps = 4/518 (0%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
MTDG FNNI LGGR G+NPGQ K+YSG ++WK+ GGGK +E++K D+ VTWMKVPR
Sbjct: 1 MTDGHLFNNILLGGRAGSNPGQFKVYSGGLAWKRQGGGKTIEIEKSDLTSVTWMKVPRAY 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
QLGVRTKDGL+YKF GFR+QDV++LTNF Q N G+SP+EKQLSVSG+NWG +D+NGNMLT
Sbjct: 61 QLGVRTKDGLFYKFIGFREQDVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINGNMLT 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
FMVG KQAFEVSLADVSQTQ+QGK DV+LEFHVDDTTG NEKDSLM++SFH+P SNTQF+
Sbjct: 121 FMVGSKQAFEVSLADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFL 180
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDEN AQV + IM +ADV + EEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN
Sbjct: 181 GDENRTAAQVLWETIMGVADVDSS-EEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 239
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
DFKIQYSS+VRLFLLPKSN PHTFVVVTLDPPIRKGQTLYPHIV+QFET+ VV+ L ++
Sbjct: 240 DFKIQYSSIVRLFLLPKSNNPHTFVVVTLDPPIRKGQTLYPHIVIQFETEAVVERNLALT 299
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
+E+L KYKD+LE SYKGLIHEVFT +LRGLSGAK+T+PG FRS QDGYAVKSSLKAEDG
Sbjct: 300 KEVLAEKYKDRLEESYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKAEDG 359
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNM--HYFDLLIRLKTEQEHLFRN 418
+LYPLEK FFFLPKPPTLILHEEI++VEFERH AGG+++ HYFDLL++LK +QEHLFRN
Sbjct: 360 LLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRN 419
Query: 419 IQRNEYHNLFDFISGKGLKIMNLGDMK-TTDGVAAVLQEDDDDAVDPHLERIKNEAGGDE 477
IQR+EYHNLF+FI+GK LKIMNLGD + T GV AVL++ DDDAVDPHLERIKN+AG +E
Sbjct: 420 IQRSEYHNLFNFINGKHLKIMNLGDGQGATGGVTAVLRDTDDDAVDPHLERIKNQAGDEE 479
Query: 478 SDEEDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEQ 515
SDEED DFVADKDD GSPTDDSG EDSDASESGGEKE+
Sbjct: 480 SDEEDEDFVADKDDSGSPTDDSGGEDSDASESGGEKEK 517
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1
SV=2
Length = 646
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/522 (80%), Positives = 463/522 (88%), Gaps = 3/522 (0%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M DG SFNNISL GRGG NPG LKI SG I WKK GGGKAVEVD+ DI V+W KV ++N
Sbjct: 1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
QLGV+TKDGLYYKF GFRDQDV +L++FFQS++G +P+EKQLSVSGRNWGEVDL+GN LT
Sbjct: 61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F+VG KQAFEVSLADVSQTQLQGKNDV LEFHVDDT GANEKDSLMEISFHIPNSNTQFV
Sbjct: 121 FLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFV 180
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDEN PP+QVF D I++MADV G E+AVVTFE IAILTPRGRY+VELHLSFLRLQGQAN
Sbjct: 181 GDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQAN 240
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
DFKIQYSSVVRLFLLPKSNQPHTFVV++LDPPIRKGQT+YPHIV+QFETD VV+SEL +S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSIS 300
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
+EL+NTK+KDKLE SYKGLIHEVFTT+LR LSGAKITKPGKFRS+QDG+AVKSSLKAEDG
Sbjct: 301 DELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDG 360
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
VLYPLEK FFFLPKPPTLILH+EIDYVEFERHAAGG+NMHYFDLLIRLKT+ EHLFRNIQ
Sbjct: 361 VLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQ 420
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVL-QEDDDDAVDPHLERIKNEAGGDESD 479
RNEYHNL+ FIS KGLKIMNLG T DGVAAVL DDDDAVDPHL RI+N+A + +
Sbjct: 421 RNEYHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAADESDE 480
Query: 480 EEDSDFVADKDDGGSPTDDSGEEDSDASESG-GE-KEQRITK 519
E++ + + DDGGSPTDDSG +DSDASE G GE KE+ I K
Sbjct: 481 EDEDFVMGEDDDGGSPTDDSGGDDSDASEGGVGEIKEKSIKK 522
>sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1
Length = 639
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/515 (75%), Positives = 452/515 (87%), Gaps = 5/515 (0%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
MTDG FNNI LGGRGGTNPGQ K++SG ++WK+ GGGK +E+DK D+ VTWMKVPR
Sbjct: 1 MTDGHHFNNILLGGRGGTNPGQFKVHSGGLAWKRQGGGKTIEIDKADVTAVTWMKVPRAY 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
QLGVR K GL+Y+F GFR+QDV+ LTNF Q N G++P+EKQLSVSG+NWG +D++GNMLT
Sbjct: 61 QLGVRIKAGLFYRFIGFREQDVSNLTNFIQKNMGVTPDEKQLSVSGQNWGGIDIDGNMLT 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
FMVG KQAFEVSL DV+QTQ+QGK DV+LE HVDDTTGANEKDSLM++SFH+P SNTQFV
Sbjct: 121 FMVGSKQAFEVSLPDVAQTQMQGKTDVLLELHVDDTTGANEKDSLMDLSFHVPTSNTQFV 180
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDE+ PPA + + I+ ADVG+ EE VVTFEGIAILTPRGRYSVELHLSFLRLQGQAN
Sbjct: 181 GDESRPPAHILWETILKFADVGSS-EEPVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 239
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
DFKIQYSS+VRLFLLPKSN PHTFVV+TLDPPIRKGQTLYPHIV+QFET+ VV+ +L +S
Sbjct: 240 DFKIQYSSIVRLFLLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVERDLALS 299
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
+ELL KYKD+LE SYKGLIHEVFT +LRGLSGAK+T+PG FRS QDGYAVKSSLKAEDG
Sbjct: 300 KELLVEKYKDRLEESYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKAEDG 359
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNM--HYFDLLIRLKTEQEHLFRN 418
+LYPLEK FFFLPKPPTLILHEEI++VEFERH AGG+++ HYFDLL++LK +QEHLFRN
Sbjct: 360 LLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRN 419
Query: 419 IQRNEYHNLFDFISGKGLKIMNL-GDMKTTDGVAA-VLQEDDDDAVDPHLERIKNEAGGD 476
IQRNEYHNLF+FI+GK +KIMNL GD + GV VL++ DDDAVDPHLERIKN+AG +
Sbjct: 420 IQRNEYHNLFNFINGKNIKIMNLGGDGQGASGVVTDVLRDTDDDAVDPHLERIKNQAGDE 479
Query: 477 ESDEEDSDFVADKDDGGSPTDDSGEEDSDASESGG 511
ESDEED DFVADKDD GSPTDDSG+E+SDAS+SGG
Sbjct: 480 ESDEEDEDFVADKDDSGSPTDDSGDEESDASDSGG 514
>sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica
GN=SSRP1-B PE=2 SV=1
Length = 640
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/510 (74%), Positives = 444/510 (87%), Gaps = 4/510 (0%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
MTDG FNNISLGGRGG NPGQ K+YSG ++WK+ GGGK +EV+K DI VTWM +PR+
Sbjct: 1 MTDGHHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSY 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
QLGV TK+GL+Y+F GFR+QD+++LTNF + N I+PEEKQLSV G NWG +++NGNML+
Sbjct: 61 QLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F VG K+AFEVSLADV+QTQ+QGK DV+LEFHVDDTTG NEKDSLM++SFH+P SNTQF
Sbjct: 121 FNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFP 180
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDEN P AQV I++ ADVG+ EEAVVTF+GIAILTPRGRYSVELHLSFLRLQGQAN
Sbjct: 181 GDENRPSAQVLWQAILNKADVGSS-EEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAN 239
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
DFKIQYSS++RLF+LPKSN PHTFVV+TLDPPIRKGQTLYPHIV+QFET+ VVQ +L +S
Sbjct: 240 DFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLS 299
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
+E+L KYKD+LE SY+GLIHEVF+ +LRGLSGAK+T+P FRS QDGYAVKSSLKAEDG
Sbjct: 300 DEVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDG 359
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNM--HYFDLLIRLKTEQEHLFRN 418
+LYPLEK FFFLPKPPTLILHEEI+YVEFERH AGG+++ HYFDLL++LK +QEHLFRN
Sbjct: 360 LLYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRN 419
Query: 419 IQRNEYHNLFDFISGKGLKIMNLGDMK-TTDGVAAVLQEDDDDAVDPHLERIKNEAGGDE 477
IQRNEYHNLF+FISGK LKI+NLG+ + GV AVLQ DDDAVDPHLERI+N+ G DE
Sbjct: 420 IQRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTGDDE 479
Query: 478 SDEEDSDFVADKDDGGSPTDDSGEEDSDAS 507
SDEED DFVADKDD GSPTDDSGEE SDAS
Sbjct: 480 SDEEDEDFVADKDDSGSPTDDSGEEGSDAS 509
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 321 bits (823), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 181/511 (35%), Positives = 278/511 (54%), Gaps = 21/511 (4%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN I +G N G+L++ + +K GK + ++A W +V +
Sbjct: 1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G++ FE+ L++VSQ GKN+V LEFH +D SLME+ F++P + V
Sbjct: 121 FDIGEQPVFEIPLSNVSQCTT-GKNEVTLEFHQNDDAEV----SLMEVRFYVPPTQEDGV 175
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 176 D-----PVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDE 480
R EY LFDF++ K L I N G + + D+D D +LER+K E E +
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMKQSYDEYADSDEDQHDAYLERMKEEGKIREENA 467
Query: 481 EDSDFVADKDDGGSPTDDS---GEEDSDASE 508
DS D G TD+S GEED D +E
Sbjct: 468 NDSS-----DGSGEETDESFNPGEEDDDVAE 493
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 321 bits (823), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 182/499 (36%), Positives = 271/499 (54%), Gaps = 21/499 (4%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN+I +G N G+L++ + +K GK + DIA V W +V +
Sbjct: 1 MADTLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
+ + T G YK+ GFR+ + L ++F+S+F + EK L V G NWG V G +L+
Sbjct: 61 GIKLLTNGGHVYKYDGFRETEYDKLFDYFKSHFSVELVEKDLCVKGWNWGSVRFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + AFE+ L++VSQ GKN+V LEFH +D + SLMEI F++P +
Sbjct: 121 FDIGDQPAFELPLSNVSQCTT-GKNEVTLEFHQNDDSEV----SLMEIRFYVPPTQ---- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
D+ + F ++S ADV +AV F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -DDGGDSVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L MS
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMS 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ KL+ S G ++E+ + +++ L KIT PG F + S KA G
Sbjct: 291 EEEVERRFEGKLKKSMSGCLYEMVSRVMKALVNRKITVPGNFLGHSGSQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEITCVNFAR---GTTTTRSFDFEIETKQGSQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDE 480
R EY LFDF++ K L I N G + + D+D D +LER+K E E+
Sbjct: 408 REEYGKLFDFVNAKKLSIKNRGLKEGMKPAYDDYADSDEDQHDAYLERMKEEGKIREN-- 465
Query: 481 EDSDFVADKDDGGSPTDDS 499
AD D+ G TD+S
Sbjct: 466 ------ADSDESGDETDES 478
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/499 (34%), Positives = 272/499 (54%), Gaps = 18/499 (3%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN++ +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D SLME+ F++P + V
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQNDDAEV----SLMEVRFYVPPTQEDGV 175
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 176 D-----PVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDE 480
R EY LFDF++ K L I N G + + + D+D D +LER+K E E +
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENA 467
Query: 481 EDSDFVADKDDGGSPTDDS 499
DS DD G TD+S
Sbjct: 468 NDSS-----DDSGEETDES 481
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/499 (35%), Positives = 272/499 (54%), Gaps = 18/499 (3%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN+I +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D SLME+ F++P + V
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQNDDAEV----SLMEVRFYVPPTQEDGV 175
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 176 D-----PVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDE 480
R EY LFDF++ K L I N G + + + D+D D +LER+K E E +
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMKEEGKIREENA 467
Query: 481 EDSDFVADKDDGGSPTDDS 499
DS DD G TD+S
Sbjct: 468 NDSS-----DDSGEETDES 481
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/499 (35%), Positives = 272/499 (54%), Gaps = 18/499 (3%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN+I +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D SLME+ F++P + V
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQNDDAEV----SLMEVRFYVPPTQEDGV 175
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 176 D-----PVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDE 480
R EY LFDF++ K L I N G + + + D+D D +LER+K E E +
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMKEEGKIREENA 467
Query: 481 EDSDFVADKDDGGSPTDDS 499
DS DD G TD+S
Sbjct: 468 NDSS-----DDSGEETDES 481
>sp|Q54G78|SSRP1_DICDI FACT complex subunit SSRP1 OS=Dictyostelium discoideum GN=ssrp1
PE=3 SV=1
Length = 527
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 263/481 (54%), Gaps = 41/481 (8%)
Query: 7 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKV-PRTNQLGVR 65
FNNISLGGR G LK + I+WK GK V DI W +V PR QL +
Sbjct: 11 FNNISLGGRISGTRGILKFTTNNITWKS-ENGKIETVSSSDIKRANWARVTPRIFQLILS 69
Query: 66 TKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEE-KQLSVSGRNWGEVDLNGNMLTFMVG 124
K G KF GF++QD + + + +SP E +LS G NWGEV +NG M+ F
Sbjct: 70 IKGGATVKFDGFKEQDYEVVRKYLSDQYNVSPLEIIELSSKGCNWGEVKVNGPMIQFTTD 129
Query: 125 Q-KQAFEVSLADVSQTQL--QGKNDVILEFHVDDTTGANEKDSLMEISFHIP-------- 173
K FE +++VSQ+ + KN++ LEFH D ++ ++++E+ F P
Sbjct: 130 HGKVGFEFPISEVSQSVIGANNKNELTLEFHHDKAMD-DDDETMVEMRFFTPIRPSKEGE 188
Query: 174 ----------------NSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAI 217
+E + F+ IM+ +D+ + +++V F I
Sbjct: 189 EGGKEKKVGEDGEEDEEDEEDAEKEEEISALEQFQQTIMNKSDMVSNVGKSLVVFSAIQF 248
Query: 218 LTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQ 277
LTPRGR +E++ +FL+L G+ +D+K+ Y S+ RLF + +Q H F +++LDPPIR+GQ
Sbjct: 249 LTPRGRIDIEMYPTFLKLHGKTHDYKVPYESISRLFQFFRPDQKHIFFIISLDPPIRQGQ 308
Query: 278 TLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKIT 337
T Y H+V+QF+ + + EL +++E L K+KD+L P G + + IL+ L+G KIT
Sbjct: 309 TKYAHLVIQFQAEENIHLELNLTDE-LQQKFKDQLSPIMNGNANALICKILKALTGKKIT 367
Query: 338 KPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAA--- 394
PG F+S ++K SLKA +G LYPLE+ FFF+ KPPT I E+I +EF R+ A
Sbjct: 368 IPGNFQSDSGANSIKCSLKANEGYLYPLERCFFFVHKPPTYIKFEDISNIEFARYGAPSV 427
Query: 395 -GGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAV 453
GGSN FDL I LK F NIQR EY +LF+F+ K L I+N T G A +
Sbjct: 428 RGGSN-RTFDLSINLKNSTSIQFVNIQREEYPSLFNFLKEKKLSILN----PVTTGPAMI 482
Query: 454 L 454
+
Sbjct: 483 I 483
>sp|Q293F6|SSRP1_DROPS FACT complex subunit Ssrp1 OS=Drosophila pseudoobscura
pseudoobscura GN=Ssrp PE=3 SV=2
Length = 727
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 181/473 (38%), Positives = 254/473 (53%), Gaps = 13/473 (2%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
MTD +N+I+ RG + G+LK+ I +K GK ++ DI + K T
Sbjct: 1 MTDSLEYNDINAEVRGVLSSGRLKLTDQNIIFKNNKTGKVEQISVDDIDLINSQKFVGTW 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L V TK G ++FTGFRD + L F + + EK++ V G NWG G++L+
Sbjct: 61 GLRVFTKSGALHRFTGFRDSEHEKLGKFIKDAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F K FEV L+ VSQ + GKN+V LE+H +D L+E+ FHIP V
Sbjct: 121 FDKDSKTIFEVPLSHVSQC-VTGKNEVTLEYHQNDDAPVG----LLEMRFHIPA-----V 170
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
+ P + F +MS A V + E++ F I ILTPRGRY +++ +F +L G+
Sbjct: 171 ESADDDPVEKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI SV+RLF+LP + F V++LDPPI++GQT Y ++VL F D EL S
Sbjct: 231 DYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFS 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E L KY+ KLE G ++EV +++ L G KIT PG F AV S KA G
Sbjct: 291 EAELRDKYEGKLEKELSGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
LYPLE+ F ++ KPP I EEI V F R +GGS FD + LK H+F +I+
Sbjct: 351 YLYPLERGFIYIHKPPLHIRFEEISSVNFAR--SGGST-RSFDFEVTLKNGTVHIFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEA 473
+ EY LFDFI+ K L + N+G K+ D+++ D +L R+K EA
Sbjct: 408 KEEYAKLFDFITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLKAEA 460
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 295 bits (756), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 264/472 (55%), Gaps = 15/472 (3%)
Query: 7 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRT 66
+ N+ RG + G+L++ KI +K GK + + D+ W +V R +L +
Sbjct: 10 YKNVFQENRGAMHDGRLQLLKEKIVFKNNKTGKIDSIQQNDLHSALWRRVARDFELKFQM 69
Query: 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126
G ++F GF++ + L +F ++ + I E ++LS G NWG D GN + F VGQK
Sbjct: 70 NSGQVFRFDGFKEMEFERLKDFVKNYYKIDLEHQELSGKGWNWGTTDFEGNEMMFQVGQK 129
Query: 127 QAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHP 186
+FE+ L +VSQ Q K++V +EFH +D + SLME+ F IP S DE
Sbjct: 130 LSFEIPLNNVSQC-TQNKDEVTMEFHQNDDSEL----SLMEMRFFIPPSQ-----DEMID 179
Query: 187 PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY 246
+ F D +M+ ADV A+ F+ + LTPRGRY + ++ F++L G+ D+KI Y
Sbjct: 180 KVKDFHDNVMAKADVLQVKGTAICVFQDLQCLTPRGRYDIRMYPKFIQLHGKTFDYKITY 239
Query: 247 SSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNT 306
+S++RLFLLP +Q F VV+LDPP+++G T Y ++L F + + EL + ++ +
Sbjct: 240 TSILRLFLLPHKDQRQIFFVVSLDPPLKQGMTRYHFLILLFYKEDDLAVELSLPDDEIEE 299
Query: 307 KYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLE 366
++ KL+ G ++EV + +++ L KIT PG F+ ++ + KA G L+PLE
Sbjct: 300 RFGGKLQKDMSGPMYEVVSRVMKHLVQRKITVPGSFKGLNGVQSITCTYKASSGFLFPLE 359
Query: 367 KSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHY-FDLLIRLKTEQEHLFRNIQRNEYH 425
+ F ++ KPP I +EI YV F R G + ++ FD I +++ +F NI+R++Y
Sbjct: 360 RGFMYVHKPPVHIRFDEIAYVNFAR---GTTKINKSFDFEIETRSKNNFVFSNIERDQYA 416
Query: 426 NLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDE 477
+L+DF+ K LKI N+G D V ++D D DP++ER+K EA E
Sbjct: 417 SLYDFVHNKQLKIKNIGK-DGADFDLMVDSDEDADVHDPYMERMKQEAAERE 467
>sp|Q05344|SSRP1_DROME FACT complex subunit Ssrp1 OS=Drosophila melanogaster GN=Ssrp PE=1
SV=2
Length = 723
Score = 295 bits (755), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 179/470 (38%), Positives = 251/470 (53%), Gaps = 13/470 (2%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
MTD +N+I+ RG G+LK+ I +K GK ++ DI + K T
Sbjct: 1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTW 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L V TK G+ ++FTGFRD + L F ++ + EK++ V G NWG G++L+
Sbjct: 61 GLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F K FEV L+ VSQ + GKN+V LEFH +D L+E+ FHIP V
Sbjct: 121 FDKESKTIFEVPLSHVSQC-VTGKNEVTLEFHQNDDAPVG----LLEMRFHIPA-----V 170
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
P F +MS A V + E++ F I ILTPRGRY +++ +F +L G+
Sbjct: 171 ESAEEDPVDKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI SV+RLF+LP + F V++LDPPI++GQT Y ++VL F D EL S
Sbjct: 231 DYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFS 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E L KY+ KLE G ++EV +++ L G KIT PG F AV S KA G
Sbjct: 291 EAELRDKYEGKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
LYPLE+ F ++ KPP I EEI V F R +GGS FD + LK H+F +I+
Sbjct: 351 YLYPLERGFIYIHKPPLHIRFEEISSVNFAR--SGGST-RSFDFEVTLKNGTVHIFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
+ EY LFD+I+ K L + N+G K+ D+++ D +L R+K
Sbjct: 408 KEEYAKLFDYITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLK 457
>sp|Q4WGK6|POB3_ASPFU FACT complex subunit pob3 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pob3 PE=3
SV=2
Length = 573
Score = 295 bits (755), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 189/577 (32%), Positives = 288/577 (49%), Gaps = 64/577 (11%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M +F+NI L PG+ K+ + W+ GGG+ +D +I W + +
Sbjct: 1 MRTAEAFDNIYLDL--SKQPGKCKLAESGLGWRPSGGGETFTLDSNNIGAAQWSRAAKGY 58
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
+L + ++ + GF +D L+ F+ +GI+ E ++ ++ G NWG+ + L
Sbjct: 59 ELKILSRSSGVIQLDGFDQEDFERLSKAFKIWYGINVENREHALRGWNWGKAEFTKAELA 118
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEK----------------DS 164
F V + AFE+ +++S T L GKN+V +EF + AN + D
Sbjct: 119 FNVQNRPAFEIPYSEISNTNLAGKNEVAVEFALTSDGDANAQPSGSTKNRGRKAAAGPDE 178
Query: 165 LMEISFHIPNSNTQ---------------FVGDENHPPAQVFRDKIMSMADVGAGGEEAV 209
L+E+ F+IP + + E A +F + +M A++G +
Sbjct: 179 LVEMRFYIPGTAVKTEKGIKTENDENGEEEEEGEEQNAANLFYETLMEKAEIGDVAGDTF 238
Query: 210 VTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTL 269
TF + LTPRGR+ ++++ S RL+G+ D+KIQY+S+ + FLLPK+++ HT +V+ L
Sbjct: 239 ATFLDVLHLTPRGRFDIDMYESSFRLRGKTYDYKIQYASIKKFFLLPKNDEMHTLIVLGL 298
Query: 270 DPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILR 329
DPP+R+GQT YP +V+Q + D + EL M+EELL ++YKDKLEP Y+ IH+V T I R
Sbjct: 299 DPPLRQGQTRYPFLVMQLKLDEEISLELNMTEELLESRYKDKLEPRYEEPIHQVVTKIFR 358
Query: 330 GLSGAKITKPGK-FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVE 388
GLSG K+ P K F S VK S+KA +G+LY L+KS F+PKP T + E I +
Sbjct: 359 GLSGKKVIMPSKDFVSHHGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYVQIENIAVIT 418
Query: 389 FERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTT 447
R S FD+ + LK EH F NI R E L +F K ++ N T+
Sbjct: 419 MSRVGGAVSASRTFDITVTLKAGMGEHQFSNINREEQQPLEEFFKAKNIRFKNEMSDDTS 478
Query: 448 DGVAAVLQEDDDDAVDPHLER----------------IKNEAGGDESDEEDSDFV----- 486
+AA L DD + D R + E+ D ++E DS+
Sbjct: 479 ALIAAALDNDDMMSSDEDGGRADRGSADEDEESVDEDFQAESESDVAEEFDSEHESSGSA 538
Query: 487 --ADKDDGGSPTDDSGEEDSDASESGGEKEQRITKSS 521
A+ DD DD EED D S E+E+R K S
Sbjct: 539 SDAEMDDASDAGDD--EEDVDMS----EEEERPKKKS 569
>sp|Q5AYE3|POB3_EMENI FACT complex subunit pob3 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pob3 PE=3
SV=2
Length = 575
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 172/488 (35%), Positives = 255/488 (52%), Gaps = 37/488 (7%)
Query: 6 SFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVR 65
SF+NI L PG+ K+ + W+ GGG +D +I W + + +L +
Sbjct: 3 SFDNIYLDL--SNQPGKCKLAETGLGWRPSGGGDTFTLDSSNIGAAQWSRAAKGYELKIL 60
Query: 66 TKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQ 125
++ + GF +D L+ F+ +GI+ E ++ ++ G NWG+ + L F V
Sbjct: 61 SRSSGVIQLDGFDQEDFERLSKAFKIWYGINVESREHALRGWNWGKAEFTKAELAFNVQN 120
Query: 126 KQAFEVSLADVSQTQLQGKNDVILEFHVD-DTTG--------------ANEKDSLMEISF 170
+ AFEV +++S T L GKN+V +E + D G A D L+E+ F
Sbjct: 121 RPAFEVPYSEISNTNLAGKNEVAVELSLSVDPNGSKPAGSTKNRGRKAAAGPDELVEMRF 180
Query: 171 HIPNSNTQF---VGDEN---------------HPPAQVFRDKIMSMADVGAGGEEAVVTF 212
+IP + + + EN A +F + +M A++G + TF
Sbjct: 181 YIPGTAVKTENGIKGENADEKNGGEGEENGEEQNAANLFYELLMEKAEIGDVAGDTFATF 240
Query: 213 EGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPP 272
+ LTPRGR+ ++++ S RL+G+ D+KIQYSS+ + FLLPK++ HT +V+ L+PP
Sbjct: 241 LDVLHLTPRGRFDIDMYESSFRLRGKTYDYKIQYSSIKKFFLLPKNDDTHTLIVLGLEPP 300
Query: 273 IRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLS 332
+R+GQT YP +V+Q + D + EL M+EELL T+YKDKLEP Y+ IH+V T I RGLS
Sbjct: 301 LRQGQTRYPFLVMQLKLDEEISLELNMTEELLETRYKDKLEPRYEEPIHQVITKIFRGLS 360
Query: 333 GAKITKPGK-FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFER 391
G K+ P K F S VK S+KA +G+LY L+KS F+PKP T I E + V R
Sbjct: 361 GKKVIMPSKDFVSHHGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYIQMENVAVVTMSR 420
Query: 392 HAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGV 450
S FD+ + LK EH F NI R E L +F K ++I N T +
Sbjct: 421 VGGAISASRTFDITVSLKAGMGEHQFSNINREEQQPLEEFFKAKNIRIKNEMSDDTNALI 480
Query: 451 AAVLQEDD 458
AA L DD
Sbjct: 481 AAALDNDD 488
>sp|Q7RWW0|POB3_NEUCR FACT complex subunit pob-3 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=pob-3 PE=3 SV=1
Length = 565
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 174/536 (32%), Positives = 286/536 (53%), Gaps = 40/536 (7%)
Query: 6 SFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVR 65
SF+NI L G+ + + WK GGG+A +D +I G W + R ++ +
Sbjct: 6 SFDNIYLDL--SKESGKSRFAENGLGWKPAGGGEAFTLDSSNIGGAQWSRAARGYEVKIL 63
Query: 66 TKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQ 125
+ + GF +D L+ F++ + ++ E K+ S+ G NWG+ + + LTF V
Sbjct: 64 LRSSGVVQLDGFHQEDYERLSKIFKNWYSVNLENKEHSLRGWNWGKAEFSKAELTFNVQN 123
Query: 126 KQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANE--------------KDSLMEISFH 171
+ AFE+ +++S T L G+N++ +EF +D +N KD L+E+ F+
Sbjct: 124 RPAFEIPYSEISNTNLAGRNEIAVEFAGNDGGKSNGHSGTGGKGKKASAGKDQLVEVRFY 183
Query: 172 IPNSNTQF----------VGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPR 221
IP + T+ +E +F D ++ A++G + + TF + LTPR
Sbjct: 184 IPGTTTRKEAEGGEAGSDADEEEKNAVTLFYDTLIEKAEIGETAGDTIATFLDVLHLTPR 243
Query: 222 GRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYP 281
GR+ ++++ + RL+G+ D+KIQY ++ + +LPK + H + + LDPP+R+GQT YP
Sbjct: 244 GRFDIDMYDASFRLRGKTYDYKIQYDAIKKFMVLPKPDDLHFLLCIGLDPPLRQGQTRYP 303
Query: 282 HIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGK 341
+V+QF+ D V +L ++EE LN KYKDKL+ Y+ +H+V I +GL+ K+T P K
Sbjct: 304 FVVMQFKADEEVTLDLNITEEELNGKYKDKLQSHYEQPLHQVVAYIFKGLANKKVTTPAK 363
Query: 342 -FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMH 400
F + + Y +K S+KA +G LY LEK+F F+PKP T I +E+ + F R S +
Sbjct: 364 DFTTHRQQYGIKCSIKASEGFLYCLEKAFMFVPKPATYISYEQTQSITFSRVGGAVSALS 423
Query: 401 YFDLLIRLKT-EQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQED-- 457
FD+ + +K F NI R + L +F KGL++ N D T+ +AA L +D
Sbjct: 424 TFDITVHMKNGAGSSQFSNINREDLKALEEFFKLKGLRVKNEID-DDTNLIAAALGDDDM 482
Query: 458 ---DDDAVDPHLERIKNEAGGDESD-----EEDSDFVADKDDGGSPTDDSGEEDSD 505
D++AV P +R + + D E +SD VA++ D +D SG E+SD
Sbjct: 483 ASSDEEAVGPKADRGSADEDEESVDEDFQAESESD-VAEEYDSNHESDGSGSEESD 537
>sp|O94529|POB3_SCHPO FACT complex subunit pob3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=pob3 PE=3 SV=1
Length = 512
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 170/509 (33%), Positives = 270/509 (53%), Gaps = 11/509 (2%)
Query: 7 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRT 66
++NI L PG+L+I + WK + + +I W + R +L +
Sbjct: 8 YDNIYLNL--SEKPGKLRIAPSGLGWKSPSLAEPFTLPISEIRRFCWSRFARGYELKIIL 65
Query: 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126
K GF +D+ L N + NF + E+K+ S+ G NWGE + G+ L F V +
Sbjct: 66 KSKDPVSLDGFSQEDLDDLINVIKQNFDMGIEQKEFSIKGWNWGEANFLGSELVFDVNSR 125
Query: 127 QAFEVSLADVSQTQLQGKNDVILEFHV--DDTTGANEKDSLMEISFHIPNSNTQ---FVG 181
AFE+ ++ V+ T L GKN+V LEF D + + D L+E+ ++P + + G
Sbjct: 126 PAFEIPISAVTNTNLSGKNEVALEFSTTDDKQIPSAQVDELVEMRLYVPGTTAKEDAADG 185
Query: 182 DE-NHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
+E A +F + + AD+G +A+V+F I +LTPRGRY ++++ + +RL+G+
Sbjct: 186 EEVEQNAANLFYESLKERADIGQAAGDAIVSFSEILLLTPRGRYDIDMYETCMRLRGKTY 245
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+K++YSS+ LFLLPK ++ H V+ L+PP+R+GQT YP +V QF D ++ +L +
Sbjct: 246 DYKVEYSSINSLFLLPKPDEQHVVFVIGLEPPLRQGQTRYPFLVTQFVRDEDMEVDLNIE 305
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E +L KY DK++ SY EV + I RGL+G K+T P +F S + AVK S KA +G
Sbjct: 306 ETVLKEKYADKVKASYDQPAFEVVSQIFRGLTGRKVTTPAEFLSHEGHAAVKCSYKANEG 365
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
LY L+KSF F+PKP L+ +I V R S FDL L++ + F NI
Sbjct: 366 QLYCLDKSFLFIPKPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNIN 425
Query: 421 RNEYHNLFDFISGKGLKIMN-LGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESD 479
R E L F+ K +KI N L D + + L ++D++ + E + + D
Sbjct: 426 RVEQSALVAFLESKQIKIHNDLADETQQTLLTSALDDEDEEGDEEMEEALSEDE--DFQA 483
Query: 480 EEDSDFVADKDDGGSPTDDSGEEDSDASE 508
E +SD + D+ +D+ G ++ SE
Sbjct: 484 ESESDVAEEYDENAESSDEEGASGAEGSE 512
>sp|Q2USL9|POB3_ASPOR FACT complex subunit pob3 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=pob3 PE=3 SV=1
Length = 576
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 162/471 (34%), Positives = 248/471 (52%), Gaps = 38/471 (8%)
Query: 6 SFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVR 65
SF+NI L PG+ K+ + WK G G+ +D ++ W + + +L +
Sbjct: 3 SFDNIYLDL--SKQPGKCKLAESGLGWKPSGEGETFTLDSSNVGAAQWSRAAKGFELKIL 60
Query: 66 TKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQ 125
++ + GF +D L+ F+ +GI+ E ++ ++ G NWG+ + L+F V
Sbjct: 61 SRSSGVIQLDGFDQEDFERLSKAFKIWYGINVESREHALRGWNWGKAEFTKAELSFNVQN 120
Query: 126 KQAFEVSLADVSQTQLQGKNDVILEFHVD-DTTGANEK----------------DSLMEI 168
+ AFEV +++S T L GKN+V +E ++ D AN + D L+E+
Sbjct: 121 RPAFEVPYSEISNTNLAGKNEVAVELALNTDGADANAQPAGSTKNRGRKAASGPDELVEM 180
Query: 169 SFHIPNS-----------------NTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVT 211
F+IP + + E A +F + +M A++G + T
Sbjct: 181 RFYIPGTVMKTEKGIKEENGKEENGEEEEEGEEQNAANLFYEMLMEKAEIGDVAGDTFAT 240
Query: 212 FEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDP 271
F + LTPRGR+ ++++ S RL+G+ D+KIQYSS+ + FLLPK++ HT +V+ LDP
Sbjct: 241 FLDVLHLTPRGRFDIDMYESSFRLRGKTYDYKIQYSSIKKFFLLPKNDDTHTLIVLGLDP 300
Query: 272 PIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGL 331
P+R+GQT YP +V+Q + D + EL M++EL+ T+YKDKLEP Y+ IH+V T I RGL
Sbjct: 301 PLRQGQTRYPFLVMQLKLDEEISLELNMTDELMETRYKDKLEPRYEEPIHQVVTKIFRGL 360
Query: 332 SGAKITKPGK-FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFE 390
SG K+ P K F S VK S+KA +G+LY L+KS F+PKP T I E I +
Sbjct: 361 SGKKVIMPSKDFVSHHGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYIQVENIAIITMS 420
Query: 391 RHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMN 440
R S FD+ + LK EH F NI R E L +F K ++ N
Sbjct: 421 RVGGAVSASRTFDITVSLKAGMGEHQFSNINREEQQPLEEFFKAKNIRFKN 471
>sp|Q6C7V4|POB3_YARLI FACT complex subunit POB3 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=POB3 PE=3 SV=1
Length = 544
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 171/490 (34%), Positives = 256/490 (52%), Gaps = 55/490 (11%)
Query: 21 GQLKIYSGKISWK-----KLGGGKAVEVD------KVDIAGVTWMKVPRTNQLGVRTKDG 69
G+L++ + WK +GG K + D K ++ W + R ++ ++TK+
Sbjct: 18 GRLRMVETGLGWKAVQKTSMGGSKETKKDEPFLLGKEELLAAFWSRGSRGFEMKIQTKNR 77
Query: 70 LYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAF 129
F GF ++ L N + N+GIS E+++ SV G NWG+ D + L F V K AF
Sbjct: 78 GAANFDGFEQDNLEELKNVMKRNYGISVEQREHSVKGWNWGKTDFERSELVFSVANKPAF 137
Query: 130 EVSLADVSQTQLQGKNDVILEFH--VDDTTGANEKDSLMEISFHIPNSNTQFVGDEN--- 184
E+ A+V+ + L GKN+V LEF D G D L+E+ F++P T GDEN
Sbjct: 138 EIPYAEVANSNLVGKNEVALEFQQPADGRAG----DELVEMRFYVPGV-TSVEGDENPKK 192
Query: 185 ----------------------------HPPAQVFRDKIMSMADVGAGGEEAVVTFEGIA 216
AQ+F D + AD+GA AVV+ I
Sbjct: 193 KQKTEKEGEEGKEGDDDADADDESEEEVQSTAQIFYDTLKEKADIGAVAGTAVVSLSEIY 252
Query: 217 ILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKG 276
++ PRGRY ++++ +F+RL+G+ D+ +QY V RL +LPK + H +VV LDPP+R+G
Sbjct: 253 LVIPRGRYDIDMYANFMRLRGKTYDYMVQYKHVQRLIVLPKPDDLHNILVVQLDPPLRQG 312
Query: 277 QTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDK-LEPSYKGLIHEVFTTILRGLSGAK 335
QT YP +V+QF + ++ EL + + KY DK L+ SY H+V +I RGL+G K
Sbjct: 313 QTRYPFLVMQFLREAEIKVELNVDDAEFAEKYADKGLKQSYDESAHQVVGSIFRGLTGRK 372
Query: 336 ITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAG 395
+T PG F++ V SLKA +G LYPLE++F FL K P I EI + R +
Sbjct: 373 LTVPGSFKTVHGHAGVSCSLKASEGHLYPLERNFLFLSK-PVFIPFAEIQDITLSRVGSS 431
Query: 396 GSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMN-LGDMKTTDGVAAV 453
+ FD+ ++L+ Q E+ F NI + E L FI KG+++ N L + K +AA
Sbjct: 432 VTTSRTFDMTLKLRNAQGEYQFSNISKEEQEGLEAFIKSKGIRLKNDLAEEKAL--LAAT 489
Query: 454 LQEDDDDAVD 463
L E DDD+ D
Sbjct: 490 LAEVDDDSDD 499
>sp|Q4IJU0|POB3_GIBZE FACT complex subunit POB3 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=POB3 PE=3 SV=1
Length = 569
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/490 (32%), Positives = 263/490 (53%), Gaps = 35/490 (7%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
MT SF+NI L G+ + WK +GGG +D +IA W + +
Sbjct: 1 MTAIESFDNIYLDL--SKESGKCRFAETGFGWKPVGGGDTFTLDHNNIASAQWSRAAKGY 58
Query: 61 QLGV--RTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNM 118
++ + R+K G+ + GF+ +D L F++ + E K+ ++ G NWG+ + + +
Sbjct: 59 EIKIVQRSKSGII-QLDGFQQEDYDRLAKVFKNWYSTVLESKEHALRGWNWGKAEFSKSE 117
Query: 119 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANE---------------KD 163
LTF V + AFE+ +++ T L G+N+V +E + ++ GAN +D
Sbjct: 118 LTFSVQNRPAFELPYSEIGNTNLAGRNEVAVEMALPES-GANAQLGGARSKGSKAAAGRD 176
Query: 164 SLMEISFHIPNSNTQFVGD------------ENHPPAQVFRDKIMSMADVGAGGEEAVVT 211
L+E+ F+IP T+ + + A +F + ++ A++G + + T
Sbjct: 177 QLVEMRFYIPGVTTRKEAEGEDAGSDAGNDEQEKNAATLFYETLIDKAEIGETAGDTIAT 236
Query: 212 FEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDP 271
F + LTPRGR+ ++++ + RL+G+ D+KIQY ++ + +LPK ++ H +V+ LDP
Sbjct: 237 FLDVLHLTPRGRFDIDMYEASFRLRGKTYDYKIQYEAIKKFMVLPKPDEVHYMLVMGLDP 296
Query: 272 PIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGL 331
P+R+GQT YP +V+QF+ D V +L ++EE L +KY+DKLEP Y+ +H+V I RGL
Sbjct: 297 PLRQGQTRYPFVVMQFKKDEEVTIDLNLNEEELKSKYQDKLEPHYEEPLHQVVAKIFRGL 356
Query: 332 SGAKITKPGK-FRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFE 390
KI+ P K F + ++ Y +K S+KA +G LY LEK+F F+PKP T I +E+ V F
Sbjct: 357 GNRKISSPAKDFITHRNQYGIKCSIKASEGFLYCLEKAFMFVPKPATYIAYEQTQSVTFS 416
Query: 391 RHAAGGSNMHYFDLLIRLKT-EQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDG 449
R + S + FD+ + LK F NI R + L F KGL++ N D
Sbjct: 417 RVSGAVSALSTFDITVLLKNGAGSSQFSNISREDLKALESFFKLKGLRVKNEIDEDANLL 476
Query: 450 VAAVLQEDDD 459
AA+ Q+ DD
Sbjct: 477 AAAMNQQMDD 486
>sp|Q6BS60|POB3_DEBHA FACT complex subunit POB3 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=POB3 PE=3 SV=1
Length = 540
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 160/448 (35%), Positives = 246/448 (54%), Gaps = 29/448 (6%)
Query: 19 NPGQLKIYSGKISWKKLGGGKAVEVDKV-------DIAGVTWMKVPRTNQLGVRTKDGLY 71
N G+++I + WK A + +I W + R +L V+TK+
Sbjct: 16 NYGRMRIADSGLGWKASVTNNASASNNAPFLLPSEEILASQWSRGSRGYELRVQTKNKGV 75
Query: 72 YKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEV 131
GF +D A L Q NF ++ E K+ S+ G NWG+ DL N L F V K FE+
Sbjct: 76 VMLDGFDVEDFANLKQELQRNFQVNLEHKEHSLRGWNWGKTDLARNELVFQVNNKPDFEI 135
Query: 132 SLADVSQTQLQGKNDVILEFHVDDTTGANEK--DSLMEISFHIP----NSNTQFVGDENH 185
+++S + L GKN+V +EF++D GAN K D ++E+ F+IP N T V +E +
Sbjct: 136 PYSEISNSNLTGKNEVAVEFNLD---GANSKAGDEMVEMRFYIPGTLENETTPAVKNEEN 192
Query: 186 -----------PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLR 234
A VF +++ AD+G EA+V+F + LTPRGRY ++++ + LR
Sbjct: 193 GEVKEEETEEISAATVFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDIDMYPTSLR 252
Query: 235 LQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQ 294
L+G+ D+KIQY+ + R+F LPK ++ H +V+ +DPP+R+GQT YP +V+QF + ++
Sbjct: 253 LRGKTYDYKIQYNQIERIFSLPKPDEAHHLLVIQIDPPLRQGQTKYPFLVMQFAKEEEIE 312
Query: 295 SELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSS 354
+L +SEE N KYKD+L+ SY H V + +GL+ ++ PG F+S + S
Sbjct: 313 LDLNVSEEEYNDKYKDRLKKSYDSQTHLVMSHCFKGLTERRLVVPGSFQSRFLQPGISCS 372
Query: 355 LKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGG-SNMHYFDLLIRLK-TEQ 412
LKA +G LYPL++ F F+ KP I EI + R AGG S FD+ I L+ + Q
Sbjct: 373 LKASEGYLYPLDRCFLFVTKPTVYIPFSEISSITMSRTGAGGVSTSRTFDMDITLRGSNQ 432
Query: 413 EHLFRNIQRNEYHNLFDFISGKGLKIMN 440
H F +I+R E + ++ KGL+I N
Sbjct: 433 SHNFGSIEREEQETIENYCLQKGLRIKN 460
>sp|Q5ALL8|POB3_CANAL FACT complex subunit POB3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=POB3 PE=3 SV=1
Length = 538
Score = 272 bits (696), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 153/440 (34%), Positives = 238/440 (54%), Gaps = 23/440 (5%)
Query: 21 GQLKIYSGKISWKKLGGGKAVE----VDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTG 76
G+++I + WK + + + +I +W + + +L V+TK+ G
Sbjct: 18 GRMRIAESGLGWKASASSGSTSQPFLLPREEILIASWSRGSKGYELRVQTKNKGVVSLDG 77
Query: 77 FRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADV 136
F D L NF I+ E ++ S+ G NWG+ DL N L F V K AFE+ +D+
Sbjct: 78 FDHDDFTQLKQELTRNFHINLEHREHSLRGWNWGKTDLARNELIFNVNNKPAFEIPYSDI 137
Query: 137 SQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNS---NTQFVGDENH-------- 185
S + L GKN+V LEF++D+ +E ++E+ F++P + T V +E +
Sbjct: 138 SNSNLTGKNEVALEFNLDNNKNGDE---IVEMRFYVPGTIENETTIVKNETNGDVIEEAV 194
Query: 186 ----PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAND 241
AQ F +++ AD+G EA+V+F + LTPRGRY ++++ S LRL+G+ D
Sbjct: 195 VNETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDIDMYPSSLRLRGKTYD 254
Query: 242 FKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSE 301
+KIQY + R+F LPK ++ H +V+ +DPP+R+GQT YP +VLQF D + EL +S+
Sbjct: 255 YKIQYEQIERIFSLPKPDETHHLIVLQIDPPLRQGQTRYPFLVLQFVKDEETELELNVSD 314
Query: 302 ELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGV 361
E KYKD+L+ +Y + V + LRGL+ K+ PG F+S V S+KA +G
Sbjct: 315 EDFEKKYKDRLKKTYDAPTNVVMSHCLRGLTERKLITPGAFQSRYLQAGVPCSVKASEGY 374
Query: 362 LYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIR-LKTEQEHLFRNIQ 420
L+PL++ F F+ KP I + EI V R G S FDL + + + Q H+F NI
Sbjct: 375 LFPLDRCFLFVTKPTLYIPYSEISSVVMSRTGGGVSASRTFDLEVNVIGSNQPHVFSNID 434
Query: 421 RNEYHNLFDFISGKGLKIMN 440
R E + F KG+K+ N
Sbjct: 435 REEQEFIESFCKEKGVKVKN 454
>sp|Q6FKI2|POB3_CANGA FACT complex subunit POB3 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=POB3 PE=3
SV=1
Length = 543
Score = 262 bits (669), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 160/518 (30%), Positives = 272/518 (52%), Gaps = 45/518 (8%)
Query: 21 GQLKIYSGKISWK-KLGGGKAVEVDKV-------DIAGVTWMKVPRTNQLGVRTKDGLYY 72
G+ +I + WK GG A +K +++ V W + R +L + TK+
Sbjct: 17 GRFRIADSGLGWKVSTSGGSASAQNKAPFLLPATELSTVQWSRGCRGFELKINTKNQGVI 76
Query: 73 KFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVS 132
+ GF + D + F F I E K+ S+ G NWG+ DL N + F + K FE+
Sbjct: 77 QLEGFSEDDFNIIKGDFHRRFSIQVEHKEHSLRGWNWGQTDLARNEMVFALNGKPVFEIP 136
Query: 133 LADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPP----- 187
A ++ T L KN+V +EF++ D T D ++E+ F++P S V DE+ P
Sbjct: 137 YARINNTNLTAKNEVAVEFNIQDDTYQPAGDEMVEMRFYLPGS---VVVDEDQPAPKKEG 193
Query: 188 ---------------AQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSF 232
A+ F +++ + AD+G +A+V+F+ + TPRGRY ++++ +
Sbjct: 194 EEEGEEAAETETKSLAEAFYEELKNKADIGEIAGDAIVSFQDVFFTTPRGRYDIDIYENS 253
Query: 233 LRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYV 292
+RL+G+ ++K+Q++ + R+ LPK++ + VV+ +DPP+R+GQT YP +VLQF+ D
Sbjct: 254 IRLRGKTYEYKLQHNQIQRIVSLPKADDINHLVVLAMDPPLRQGQTTYPFLVLQFQKDEE 313
Query: 293 VQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVK 352
+ +L +S++ KYKDKL+ Y H V + +L+GL+G ++ PG+++S + AV
Sbjct: 314 TEVQLNLSDQEYEEKYKDKLKKQYDSKTHIVISHVLKGLTGRRVVVPGEYKSKYEQCAVS 373
Query: 353 SSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ 412
S KA +G LYPL+ +FFFL KP I ++ V R ++ FDL + L++ +
Sbjct: 374 CSYKANEGYLYPLDNAFFFLTKPTLYIPFNDVSSVVISRAGQTSTSSRTFDLEVILRSNR 433
Query: 413 -EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKN 471
+F NI + E L +F+ K L++ N + + + L D DD E +
Sbjct: 434 GSTIFGNISKEEQQLLENFLKSKNLRVKN-EEKDAQVRLQSALGSDSDD------EDVNM 486
Query: 472 EAGGDESDEEDSDF-VADKDDGGSPTDDSGEE-DSDAS 507
+ G++ + D DF V+ DD D+ EE DS+A+
Sbjct: 487 GSAGEDDESVDEDFHVSSGDDD----DEVAEEFDSEAA 520
>sp|Q04636|POB3_YEAST FACT complex subunit POB3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POB3 PE=1 SV=1
Length = 552
Score = 258 bits (659), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 163/541 (30%), Positives = 270/541 (49%), Gaps = 52/541 (9%)
Query: 21 GQLKIYSGKISWK--KLGGGKAVEVDK------VDIAGVTWMKVPRTNQLGVRTKDGLYY 72
G+ +I + WK GG A + K +++ V W + R L + TK+
Sbjct: 17 GRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 76
Query: 73 KFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVS 132
+ GF D + N F F I E+++ S+ G NWG+ DL N + F + K FE+
Sbjct: 77 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIP 136
Query: 133 LADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIP---------------NSNT 177
A ++ T L KN+V +EF++ D D L+E+ F+IP S+
Sbjct: 137 YARINNTNLTSKNEVGIEFNIQDEEYQPAGDELVEMRFYIPGVIQTNVDENMTKKEESSN 196
Query: 178 QFV--------------GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGR 223
+ V E A+ F +++ AD+G +A+V+F+ + TPRGR
Sbjct: 197 EVVPKKEDGAEGEDVQMAVEEKSMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGR 256
Query: 224 YSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHI 283
Y ++++ + +RL+G+ ++K+Q+ + R+ LPK++ H +V+ ++PP+R+GQT YP +
Sbjct: 257 YDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHLLVLAIEPPLRQGQTTYPFL 316
Query: 284 VLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFR 343
VLQF+ D + +L + +E YKDKL+ Y H V + +L+GL+ ++ PG+++
Sbjct: 317 VLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYK 376
Query: 344 SAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFD 403
S D AV S KA +G LYPL+ +FFFL KP I ++ V R ++ FD
Sbjct: 377 SKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFD 436
Query: 404 LLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAV 462
L + L++ + F NI + E L F+ K L++ N D + + + L D D+
Sbjct: 437 LEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKN-EDREVQERLQTALGSDSDE-- 493
Query: 463 DPHLERIKNEAGGDESDEEDSDFVADKDDGGSPTDDSGEE-DSDASES---GGEKEQRIT 518
E I + G++ + D DF D+ D+ EE DSDA+ S GG E+R +
Sbjct: 494 ----EDINMGSAGEDDESVDEDFQVSSDNDA---DEVAEEFDSDAALSDAEGGSDEERPS 546
Query: 519 K 519
K
Sbjct: 547 K 547
>sp|Q756X6|POB3_ASHGO FACT complex subunit POB3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=POB3 PE=3 SV=1
Length = 542
Score = 258 bits (658), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 156/522 (29%), Positives = 268/522 (51%), Gaps = 42/522 (8%)
Query: 21 GQLKIYSGKISWKK--LGGGKAVEVDKV------DIAGVTWMKVPRTNQLGVRTKDGLYY 72
G+ ++ G + WK GG A++ ++ ++A V W + R +L + TK+
Sbjct: 17 GRFRLGEGGLGWKASATGGSAAMQNNEPILLTADELASVQWSRGCRGYELKINTKNKGVV 76
Query: 73 KFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVS 132
+ GF +D L N Q F + E K S+ G NWG DL N L F + K FE+
Sbjct: 77 QLDGFSQEDFTLLKNDLQRRFNVQLEHKDHSLRGWNWGTTDLTRNELIFSLNGKPTFEIP 136
Query: 133 LADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQ--- 189
+ +S T L KN+V LEF + D L+E+ ++P TQ D + PA+
Sbjct: 137 YSHISNTNLTSKNEVALEFDLQKDGYNPAGDELVEMRLYVPGVVTQ--EDRHSSPAEDAD 194
Query: 190 ---------------VFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLR 234
F +++ + A++G +A+++F+ + TPRGRY ++++ + +R
Sbjct: 195 VDMEKDNKEEKSIAEAFYEELRAKAEIGEVSGDAIISFQDVFFTTPRGRYDIDIYKNSIR 254
Query: 235 LQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQ 294
L+G+ ++K+Q+ + R+F LPK++ H +V++++PP+R+GQT YP++VLQF+ D +
Sbjct: 255 LRGKTYEYKLQHRQIQRIFSLPKADDIHHLMVLSIEPPLRQGQTTYPYLVLQFQKDEETE 314
Query: 295 SELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSS 354
+L + ++ YKDKL+ Y H V + +L+GL+ ++ PG+++S + AV S
Sbjct: 315 VQLNVEDDEFERLYKDKLKKQYDAKTHVVLSHVLKGLTDTRVVVPGEYKSKHEQCAVSCS 374
Query: 355 LKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ-E 413
KA +G LYPL+ +F FL KP I +++ V R ++ FDL + L++ +
Sbjct: 375 FKANEGHLYPLDNAFMFLTKPTLYIPFQDVSSVNISRAGQATTSSRTFDLEVVLRSNRGS 434
Query: 414 HLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEA 473
F NI + E L F+ K +++ N + +T + L D +D E + +
Sbjct: 435 TTFANISKEEQQILESFLKSKNVRVKN-EEKETQQRLQTALGSDSED------EDVNMGS 487
Query: 474 GGDESDEEDSDFVADKDDGGSPTDDSGEE-DSDASESGGEKE 514
++ + D DF A+ +D DD EE DSDA S E E
Sbjct: 488 AAEDDESVDEDFQAESED-----DDVAEEFDSDAGVSESETE 524
>sp|Q4P647|POB3_USTMA FACT complex subunit POB3 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=POB3 PE=3 SV=1
Length = 558
Score = 253 bits (645), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 167/525 (31%), Positives = 272/525 (51%), Gaps = 48/525 (9%)
Query: 18 TNPGQLKIYSGKISWK-KLGGGKAVEVDKVDIAGVTWMKVPRTNQLGV---RTKDG---- 69
T PG+L++ G + WK +G G + + +A W++V R QL + + +D
Sbjct: 16 TTPGKLRMSQGGLGWKPSVGEGSTITIPADQMASFQWIRVARNYQLAIYLNKDRDAPSSA 75
Query: 70 ----LYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQ 125
F GF D L++ + F E K++S G NWG+ ++ + + F+V
Sbjct: 76 QTNPRRTNFDGFVRDDFDRLSSHIRQYFNKPLEAKEVSTRGWNWGQAKISNHDVQFLVRD 135
Query: 126 KQAFEVSLADVSQTQLQGKNDVILEF------------HVDDTTGANEK----DSLMEIS 169
K AFE+ L+ ++ + + K +V +EF D G + D L+E+
Sbjct: 136 KLAFELPLSHLANSNI-AKTEVSMEFLNPEQQQPGANTGTSDVNGTKSRRSKGDQLVEMR 194
Query: 170 FHIPN-------SNTQFVGDEN----HPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAIL 218
++P S+ D++ A+ F + + S AD+G +++V F+ + +L
Sbjct: 195 LYVPGQAIKDDGSDAASAQDDDVNNEETAAEAFHEALKSKADIGQVAGDSIVVFKEVLVL 254
Query: 219 TPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQT 278
TPRGRY +++ +F+RL+G+ D+KI YSS+ +LFLLPK+++ H +V+ LDPPIR+GQT
Sbjct: 255 TPRGRYDIDVFSTFIRLRGKTYDYKILYSSMNKLFLLPKADEIHVMLVIGLDPPIRQGQT 314
Query: 279 LYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITK 338
YP++VLQF + + +EL + E+ + KY KL+ Y+ + T I + LSG K+
Sbjct: 315 RYPYLVLQFPREEEMDAELNLDEQTIQEKYDGKLKKRYEEPTFRIVTNIFKVLSGQKVAT 374
Query: 339 PGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSN 398
P F S+ ++K ++KA DG LYPLEKS ++ K P + + EI R ++
Sbjct: 375 PTDFESSSGQTSIKCNVKAADGNLYPLEKSLLWVSKQPVYVPYSEIHQAILSRVGGAVAS 434
Query: 399 MHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDD 458
FDL + K+ EH F++I R E L +++ + ++I N +T AA
Sbjct: 435 SKTFDLRVATKSGTEHTFQSISREELDRLKAWLADRKVRIKNEMAEETGGLAAAAAAGLL 494
Query: 459 DDAVDPHLERIKNEAGG---DESDEEDSDFVADKD-DGGSPTDDS 499
D D + AGG DE EED+DF AD D DGGSP++ S
Sbjct: 495 SDDDDEEM----GAAGGADEDEDSEEDADFAADSDSDGGSPSEAS 535
>sp|Q6CWD7|POB3_KLULA FACT complex subunit POB3 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=POB3 PE=3 SV=1
Length = 555
Score = 248 bits (632), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 160/549 (29%), Positives = 268/549 (48%), Gaps = 58/549 (10%)
Query: 7 FNNISLGGRGGTNPGQLKIYSGKISWKK--LGGGKAVEVDKV------DIAGVTWMKVPR 58
+N LGGR ++ G + WK GG + + ++ +++ V W + R
Sbjct: 10 YNQSKLGGR-------FRLAEGGLGWKASATGGSASTQNNEPLLLAADEVSSVQWSRGCR 62
Query: 59 TNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNM 118
+L + TK+ + GF+ +D L N FQ F + E ++ S+ G NWG++DL N
Sbjct: 63 GYELKISTKNKGLIQMDGFQQEDFNLLKNDFQRRFNMQLEHREHSLRGWNWGKLDLARNE 122
Query: 119 LTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQ 178
+ F + K FE+ ++ T L KN++ LEF + D L+E+ ++P + +
Sbjct: 123 MVFSLNGKPTFEIPYTHINNTNLTAKNEIALEFDTQNEAYNPAGDELVEMRLYVPGTVEE 182
Query: 179 -------FVGDENHPP------------------------AQVFRDKIMSMADVGAGGEE 207
V DE A+ F +++ S AD+G +
Sbjct: 183 NEDQDQIMVKDEAEAEDGVKSEVKTEEGSEEPDVQEEKTLAEYFYEELRSKADIGEISGD 242
Query: 208 AVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVV 267
A+++F+ + TPRGRY ++++ + +RL+G+ ++K+Q+ + R+F LPK++ H +V+
Sbjct: 243 AIISFQDLFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQINRIFSLPKADDIHYLMVL 302
Query: 268 TLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTI 327
++DPPIR+GQT YP +VLQF+ D + +L + ++ YKDKL+ Y H V + +
Sbjct: 303 SIDPPIRQGQTSYPFLVLQFQKDEETEVQLNVEDDEFEKLYKDKLKKQYDAKTHIVLSHV 362
Query: 328 LRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYV 387
L+GL+G ++ PG+++S D AV S K +G LYPL+ +F FL KP I ++I V
Sbjct: 363 LKGLTGRRVIVPGEYKSKYDQCAVSCSYKVNEGHLYPLDNAFLFLTKPTLYIPFQDIAAV 422
Query: 388 EFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKT 446
R ++ FDL + ++ + F NI + E L F+ K L++ N
Sbjct: 423 NISRAGQTSTSARTFDLEVVMRANRGTTTFANISKEEQQLLETFLRSKNLRVKN-----E 477
Query: 447 TDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDGGSPTDDSGEE-DSD 505
LQ D I + G++ + D DF A +D DD EE DS+
Sbjct: 478 DKEAEQRLQTAFGSDSDDDDVDINMGSAGEDEESVDEDFHASDED-----DDVAEEFDSE 532
Query: 506 ASESGGEKE 514
AS S E E
Sbjct: 533 ASASDSEGE 541
>sp|P0CR74|POB3_CRYNJ FACT complex subunit POB3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=POB3 PE=3 SV=1
Length = 588
Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 243/457 (53%), Gaps = 28/457 (6%)
Query: 47 DIAGVTWMKVPRTNQL--GVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSV 104
DI TW +V R QL G+R + F GF+ D+ + Q F I+ E + S+
Sbjct: 46 DIRHATWFRVARHFQLRLGMRNSEKPRISFDGFKRDDLDKIKRTLQEYFNITLETRDTSL 105
Query: 105 SGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVD-----DTTGA 159
G NWGE + G+ L F V K AF+V L+ V+ + + GK +V LEF+ D
Sbjct: 106 KGWNWGEAQVKGSDLVFQVQGKTAFDVPLSQVANSNIAGKYEVALEFNPPSNYKFDPKDL 165
Query: 160 NEK--DSLMEISFHIPNSNTQFVGDE---------------NHPPAQVFRDKIMSMADVG 202
N++ D ++E+ F+IP + + G + A F I AD+G
Sbjct: 166 NKRPPDEMVEMRFYIPGKSMKKAGSDAGSGGEETELDEEGNEVSAADAFHSLIKEKADIG 225
Query: 203 AGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPH 262
A +++V FE ILTPRGR+S+E++ +RL G++ D ++ ++S+ R+FLLPK + H
Sbjct: 226 AVVGDSIVVFEDCLILTPRGRFSIEVYADSIRLVGKSTDHRVPFTSIHRIFLLPKLDDLH 285
Query: 263 TFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHE 322
+V+ LDPPIR+G T YP +V Q+ D VV +EL +++E L +Y D LE +Y+ +
Sbjct: 286 VQLVLGLDPPIRQGATRYPFLVAQWPKDEVVNAELNLTDEEL-AQYPD-LEKTYEATTFQ 343
Query: 323 VFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHE 382
V + +L+ L+G K+T PG R+AQ +++++KA G LY LEK F+ K P LI
Sbjct: 344 VVSRVLKALTGKKVTPPGSLRNAQGLNGIRANVKAVQGELYFLEKGLIFISKQPILIDFS 403
Query: 383 EIDYVEFERHAAGGSNMHYFDLLIRLKT-EQEHLFRNIQRNEYHNLFDFISGKGLKIMNL 441
+ D + F R G ++ FD+ + KT +H+F I + E + F+ K +++ N
Sbjct: 404 KTDSISFSRVGGGVASARTFDMRVVSKTGGADHVFSAINKQEVGPISSFLQSKNIRLKNE 463
Query: 442 GDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDES 478
+ D + +DD++ P + ++A D+S
Sbjct: 464 MEEAIVD-IDEPFSDDDEEMESPSEDERPSKAKNDKS 499
>sp|P0CR75|POB3_CRYNB FACT complex subunit POB3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=POB3 PE=3 SV=1
Length = 588
Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 243/457 (53%), Gaps = 28/457 (6%)
Query: 47 DIAGVTWMKVPRTNQL--GVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSV 104
DI TW +V R QL G+R + F GF+ D+ + Q F I+ E + S+
Sbjct: 46 DIRHATWFRVARHFQLRLGMRNSEKPRISFDGFKRDDLDKIKRTLQEYFNITLETRDTSL 105
Query: 105 SGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVD-----DTTGA 159
G NWGE + G+ L F V K AF+V L+ V+ + + GK +V LEF+ D
Sbjct: 106 KGWNWGEAQVKGSDLVFQVQGKTAFDVPLSQVANSNIAGKYEVALEFNPPSNYKFDPKDL 165
Query: 160 NEK--DSLMEISFHIPNSNTQFVGDE---------------NHPPAQVFRDKIMSMADVG 202
N++ D ++E+ F+IP + + G + A F I AD+G
Sbjct: 166 NKRPPDEMVEMRFYIPGKSMKKAGSDAGSGGEETELDEEGNEVSAADAFHSLIKEKADIG 225
Query: 203 AGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPH 262
A +++V FE ILTPRGR+S+E++ +RL G++ D ++ ++S+ R+FLLPK + H
Sbjct: 226 AVVGDSIVVFEDCLILTPRGRFSIEVYADSIRLVGKSTDHRVPFTSIHRIFLLPKLDDLH 285
Query: 263 TFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHE 322
+V+ LDPPIR+G T YP +V Q+ D VV +EL +++E L +Y D LE +Y+ +
Sbjct: 286 VQLVLGLDPPIRQGATRYPFLVAQWPKDEVVNAELNLTDEEL-AQYPD-LEKTYEATTFQ 343
Query: 323 VFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHE 382
V + +L+ L+G K+T PG R+AQ +++++KA G LY LEK F+ K P LI
Sbjct: 344 VVSRVLKALTGKKVTPPGSLRNAQGLNGIRANVKAVQGELYFLEKGLIFISKQPILIDFS 403
Query: 383 EIDYVEFERHAAGGSNMHYFDLLIRLKT-EQEHLFRNIQRNEYHNLFDFISGKGLKIMNL 441
+ D + F R G ++ FD+ + KT +H+F I + E + F+ K +++ N
Sbjct: 404 KTDSISFSRVGGGVASARTFDMRVVSKTGGADHVFSAINKQEVGPISSFLQSKNIRLKNE 463
Query: 442 GDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDES 478
+ D + +DD++ P + ++A D+S
Sbjct: 464 MEEAIVD-IDEPFSDDDEEMESPSEDERPSKAKNDKS 499
>sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A OS=Caenorhabditis elegans GN=hmg-4
PE=3 SV=1
Length = 697
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 139/452 (30%), Positives = 234/452 (51%), Gaps = 16/452 (3%)
Query: 21 GQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQ 80
G LK+ +++K GGK+V V DI + W K+ L V DG ++F GF+D
Sbjct: 20 GTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDT 79
Query: 81 DVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQ 140
D+ + +F SN+ S ++ L + G N+G+ ++ G + F K FE+ +VS
Sbjct: 80 DLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVSNV- 138
Query: 141 LQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMAD 200
+ KN+ +LEFH +D + K LME+ FH+P +E+ + F+ +++ A
Sbjct: 139 IANKNEAVLEFHQND----DSKVQLMEMRFHMP---IDLENEEDADKVEEFKKAVLAYAG 191
Query: 201 VGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQ 260
+ A E+ + I TPRGRY ++++ + + L G+ D+KI S+ RLFL+P +
Sbjct: 192 LEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRLFLVPHKDG 251
Query: 261 PHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLI 320
H + V++L+PPIR+GQT Y +++ +F D EL +++E L + L G I
Sbjct: 252 RHVYFVLSLNPPIRQGQTRYSYLIFEFGKDEEQDLELALTDEQLESS-NGNLRRDMTGPI 310
Query: 321 HEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLIL 380
+E + + + + KIT PG+F + A++ + + G+LYP+EK F F+ KP I
Sbjct: 311 YETISILFKSICNLKITVPGRFLGSSGTPAIQCTHRQNPGLLYPMEKGFLFIHKPAMYIR 370
Query: 381 HEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMN 440
EEI F R + G+ FD I LK F +++ E + LFD+++ K +KI N
Sbjct: 371 FEEISSCHFAR-SDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENNKLFDYLNKKNIKIRN 429
Query: 441 LGDMKTTDGVAAVLQEDDDDAVDPHLERIKNE 472
+ V + + DD +DP+ + E
Sbjct: 430 ------SQRVENTVADSSDDEIDPYKAAVTAE 455
>sp|O01683|SSP1B_CAEEL FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3
PE=3 SV=1
Length = 689
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 154/525 (29%), Positives = 260/525 (49%), Gaps = 24/525 (4%)
Query: 7 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRT 66
F + + G G L + I++ GGK+V + D+ + W K+ L V
Sbjct: 6 FKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKPGLRVGL 65
Query: 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126
DG ++F GF D D+ + +F SN+ S + L ++G N+G+ D+ G + F +
Sbjct: 66 SDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIEFSWENE 125
Query: 127 QAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHP 186
FE+ +VS + KN+ ILEFH ++ + K LME+ FH+P +E+
Sbjct: 126 PIFEIPCTNVSNV-IANKNEAILEFHQNEQS----KVQLMEMRFHMP---VDLENEEDTD 177
Query: 187 PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY 246
+ F+ +++ A + A E+ + I TPRGRY ++++ + + L G+ D+KI
Sbjct: 178 KVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPV 237
Query: 247 SSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNT 306
++ RLFL+P + + V++L+PPIR+GQT Y +++ +F D EL +++E L+
Sbjct: 238 KTINRLFLVPHKDGRQVYFVLSLNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQLDY 297
Query: 307 KYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLE 366
+ L+ G I+E + + + + K+T PG+F + A++ + + G+LYP+E
Sbjct: 298 -FNGNLQREMTGPIYETISILFKSICNLKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPME 356
Query: 367 KSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHN 426
K F F+ KP I EEI F R + G+ FD I LKT F + + E +
Sbjct: 357 KGFLFIQKPVMYIRFEEISSCHFAR-SDSGTVTRTFDFEIDLKTGSSLTFSAMDKEENNK 415
Query: 427 LFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDEE----- 481
LFD+++ K +KI N D +A D+D +DP+ +K E + D +
Sbjct: 416 LFDYLNKKEIKIRN---SHRIDNKSAGYGSSDEDDIDPYKSTVKAEGREQDDDSDDESTD 472
Query: 482 -----DSDFVADKDDGGSPTDDSGEEDSDASESGGEKEQRITKSS 521
D D K+D S ++ SG E D +SG EK+ T S
Sbjct: 473 EDYDLDKDMKKQKNDKDS-SEGSGSEPDDEYDSGSEKDASGTGES 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,875,237
Number of Sequences: 539616
Number of extensions: 9710578
Number of successful extensions: 42842
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 319
Number of HSP's that attempted gapping in prelim test: 29709
Number of HSP's gapped (non-prelim): 11096
length of query: 522
length of database: 191,569,459
effective HSP length: 122
effective length of query: 400
effective length of database: 125,736,307
effective search space: 50294522800
effective search space used: 50294522800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)