Query 009912
Match_columns 522
No_of_seqs 196 out of 395
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 18:48:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0526 Nucleosome-binding fac 100.0 8E-155 2E-159 1210.0 44.2 493 1-507 1-496 (615)
2 COG5165 POB3 Nucleosome-bindin 100.0 6E-137 1E-141 1035.2 36.0 499 5-516 3-507 (508)
3 PF03531 SSrecog: Structure-sp 100.0 4E-85 8.6E-90 638.1 10.4 222 74-295 1-222 (222)
4 KOG1189 Global transcriptional 100.0 4.7E-32 1E-36 294.0 17.7 217 211-440 607-841 (960)
5 PF08512 Rtt106: Histone chape 100.0 1.1E-28 2.4E-33 212.8 9.0 92 348-441 1-95 (95)
6 COG5406 Nucleosome binding fac 99.9 3.5E-26 7.6E-31 244.4 19.8 219 210-440 652-893 (1001)
7 PF14470 bPH_3: Bacterial PH d 95.9 0.063 1.4E-06 45.2 9.1 77 350-433 10-96 (96)
8 PF08512 Rtt106: Histone chape 95.7 0.046 9.9E-07 47.4 7.7 73 18-92 10-88 (95)
9 PF14470 bPH_3: Bacterial PH d 91.4 1.5 3.3E-05 36.7 8.7 74 17-91 20-96 (96)
10 KOG0526 Nucleosome-binding fac 90.2 0.27 5.9E-06 54.3 3.7 71 358-434 19-92 (615)
11 COG0779 Uncharacterized protei 88.8 4.6 9.9E-05 38.3 10.4 89 47-141 24-149 (153)
12 PF08567 TFIIH_BTF_p62_N: TFII 87.2 1.5 3.2E-05 36.9 5.5 52 18-69 11-67 (79)
13 PF05764 YL1: YL1 nuclear prot 85.9 0.4 8.6E-06 48.4 1.6 10 478-487 37-46 (240)
14 PF04283 CheF-arch: Chemotaxis 84.0 25 0.00055 35.2 13.4 149 16-174 23-197 (221)
15 PF04931 DNA_pol_phi: DNA poly 79.8 2.3 5.1E-05 49.8 5.0 17 418-434 619-635 (784)
16 COG5165 POB3 Nucleosome-bindin 79.7 6.5 0.00014 42.0 7.6 53 40-92 377-435 (508)
17 PRK14646 hypothetical protein; 79.1 20 0.00044 33.9 10.2 91 47-142 23-151 (155)
18 PRK14630 hypothetical protein; 72.2 33 0.00072 32.0 9.5 89 47-141 24-142 (143)
19 KOG1832 HIV-1 Vpr-binding prot 72.1 4.4 9.5E-05 47.8 4.3 15 419-433 1377-1391(1516)
20 PRK14637 hypothetical protein; 68.4 58 0.0013 30.7 10.3 89 47-141 24-145 (151)
21 PF04147 Nop14: Nop14-like fam 64.8 4.7 0.0001 47.8 2.8 12 419-430 276-287 (840)
22 PF08567 TFIIH_BTF_p62_N: TFII 64.7 24 0.00051 29.7 6.3 55 352-411 6-67 (79)
23 PF02893 GRAM: GRAM domain; I 63.0 12 0.00025 29.9 4.0 38 351-388 19-66 (69)
24 PF06524 NOA36: NOA36 protein; 58.3 12 0.00025 38.5 3.9 10 400-409 221-230 (314)
25 PRK14634 hypothetical protein; 56.8 1E+02 0.0022 29.2 9.8 91 47-142 23-151 (155)
26 KOG3241 Uncharacterized conser 55.9 10 0.00022 36.9 2.9 24 478-501 190-213 (227)
27 PF09073 BUD22: BUD22; InterP 55.9 17 0.00037 39.8 5.0 18 423-440 133-151 (432)
28 KOG0127 Nucleolar protein fibr 55.9 8.6 0.00019 43.1 2.7 15 422-436 169-183 (678)
29 smart00568 GRAM domain in gluc 55.8 18 0.00038 28.0 3.8 38 351-388 12-58 (61)
30 PRK14640 hypothetical protein; 54.3 1.3E+02 0.0029 28.2 10.1 89 47-141 22-147 (152)
31 PRK14638 hypothetical protein; 53.8 91 0.002 29.4 8.8 89 47-141 24-146 (150)
32 PF14317 YcxB: YcxB-like prote 52.4 29 0.00063 26.1 4.5 62 25-90 1-62 (62)
33 KOG1832 HIV-1 Vpr-binding prot 51.3 13 0.00028 44.1 3.3 9 426-434 1361-1369(1516)
34 PF02724 CDC45: CDC45-like pro 50.4 13 0.00029 42.6 3.2 10 433-442 96-105 (622)
35 PRK14647 hypothetical protein; 50.2 1.1E+02 0.0024 28.9 9.0 90 47-141 24-155 (159)
36 PRK14631 hypothetical protein; 50.2 97 0.0021 30.0 8.6 95 47-141 24-170 (174)
37 PF03066 Nucleoplasmin: Nucleo 50.1 5.4 0.00012 37.6 0.0 9 513-521 141-149 (149)
38 PF14844 PH_BEACH: PH domain a 49.3 55 0.0012 28.2 6.3 59 18-77 16-92 (106)
39 PF14844 PH_BEACH: PH domain a 45.4 97 0.0021 26.7 7.2 69 355-428 14-102 (106)
40 PF13619 KTSC: KTSC domain 45.1 37 0.0008 26.7 4.1 42 44-87 2-43 (60)
41 PF02893 GRAM: GRAM domain; I 44.5 40 0.00086 26.7 4.3 36 105-140 27-66 (69)
42 PF10446 DUF2457: Protein of u 44.1 20 0.00044 39.3 3.2 16 427-443 28-43 (458)
43 COG5406 Nucleosome binding fac 43.4 16 0.00035 41.8 2.4 25 369-393 713-738 (1001)
44 KOG1189 Global transcriptional 43.2 14 0.00031 43.0 2.0 24 126-151 335-360 (960)
45 PF08644 SPT16: FACT complex s 42.5 25 0.00055 33.3 3.3 28 208-235 120-152 (152)
46 PF03703 bPH_2: Bacterial PH d 41.5 45 0.00097 26.5 4.2 57 374-431 22-80 (80)
47 PF06524 NOA36: NOA36 protein; 39.5 40 0.00087 34.8 4.3 14 379-392 121-134 (314)
48 PF03517 Voldacs: Regulator of 39.4 1.5E+02 0.0032 27.2 7.7 84 110-201 1-105 (135)
49 PF12462 Helicase_IV_N: DNA he 37.7 1.2E+02 0.0027 28.8 7.2 71 21-93 18-89 (166)
50 PF07622 DUF1583: Protein of u 37.5 36 0.00077 37.0 3.7 45 97-141 82-126 (399)
51 PRK14636 hypothetical protein; 36.7 2.2E+02 0.0048 27.5 8.8 92 47-141 21-149 (176)
52 PF10756 bPH_6: Bacterial PH d 34.0 59 0.0013 26.3 3.8 56 22-81 3-58 (73)
53 COG4687 Uncharacterized protei 33.9 68 0.0015 29.1 4.3 74 18-94 22-98 (122)
54 PF02576 DUF150: Uncharacteris 33.6 3.3E+02 0.0071 24.9 9.1 90 47-141 12-141 (141)
55 PHA02664 hypothetical protein; 33.1 40 0.00086 35.8 3.2 26 79-104 59-84 (534)
56 KOG0127 Nucleolar protein fibr 30.9 39 0.00085 38.2 2.9 17 246-262 96-112 (678)
57 KOG2038 CAATT-binding transcri 29.9 43 0.00093 39.4 3.1 14 186-199 572-585 (988)
58 COG4909 PduC Propanediol dehyd 29.9 45 0.00098 35.9 3.0 44 57-101 34-77 (554)
59 TIGR02888 spore_YlmC_YmxH spor 29.9 1.4E+02 0.003 25.0 5.4 49 204-252 14-67 (76)
60 PF15406 PH_6: Pleckstrin homo 29.1 81 0.0018 28.5 4.0 63 359-433 49-111 (112)
61 PF08000 bPH_1: Bacterial PH d 28.8 3.3E+02 0.0071 25.0 8.0 58 351-411 33-98 (124)
62 PF14317 YcxB: YcxB-like prote 28.0 1.2E+02 0.0026 22.6 4.5 30 228-257 1-30 (62)
63 COG4343 CRISPR-associated prot 27.9 17 0.00037 37.3 -0.4 31 99-138 21-51 (281)
64 cd01794 DC_UbP_C dendritic cel 26.4 99 0.0021 25.0 3.9 46 62-107 1-46 (70)
65 PF03115 Astro_capsid: Astrovi 25.8 23 0.00049 41.8 0.0 20 399-418 573-592 (787)
66 cd01201 Neurobeachin Neurobeac 25.2 50 0.0011 29.7 2.0 69 17-88 16-101 (108)
67 PF06115 DUF956: Domain of unk 24.9 2.2E+02 0.0048 26.1 6.0 75 18-95 22-100 (118)
68 KOG2897 DNA-binding protein YL 24.7 39 0.00085 36.4 1.5 6 481-486 61-66 (390)
69 KOG0943 Predicted ubiquitin-pr 24.7 46 0.00099 41.1 2.1 21 124-144 1230-1250(3015)
70 PF13742 tRNA_anti_2: OB-fold 24.2 4.4E+02 0.0096 22.7 7.8 29 201-229 67-95 (99)
71 PF13619 KTSC: KTSC domain 23.9 85 0.0018 24.7 2.9 27 403-429 17-43 (60)
72 cd01763 Sumo Small ubiquitin-r 23.5 1.9E+02 0.0041 24.3 5.2 41 58-98 10-50 (87)
73 PF04683 Proteasom_Rpn13: Prot 23.4 2.6E+02 0.0056 23.8 6.0 38 18-58 14-60 (85)
74 PRK00092 ribosome maturation p 22.8 6.3E+02 0.014 23.6 9.7 90 47-141 23-150 (154)
75 PF03703 bPH_2: Bacterial PH d 22.5 3.4E+02 0.0073 21.3 6.3 50 39-88 23-79 (80)
76 PTZ00007 (NAP-L) nucleosome as 22.5 78 0.0017 33.8 3.2 11 400-410 142-152 (337)
77 TIGR01896 cas_AF1879 CRISPR-as 21.6 27 0.00058 36.2 -0.4 40 103-151 16-55 (271)
78 COG5129 MAK16 Nuclear protein 21.5 57 0.0012 33.0 1.8 7 494-500 248-254 (303)
79 cd03687 Dehydratase_LU Dehydra 21.4 86 0.0019 34.6 3.2 44 58-102 28-71 (545)
80 PF14605 Nup35_RRM_2: Nup53/35 21.1 1.6E+02 0.0036 22.6 4.0 43 71-116 3-45 (53)
81 KOG3540 Beta amyloid precursor 20.9 68 0.0015 35.8 2.4 17 426-442 155-171 (615)
82 PF05285 SDA1: SDA1; InterPro 20.7 47 0.001 35.0 1.2 18 415-434 64-81 (324)
No 1
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=100.00 E-value=7.8e-155 Score=1209.99 Aligned_cols=493 Identities=46% Similarity=0.766 Sum_probs=453.4
Q ss_pred CCCCCcccceEecCCCCCCCeeEEEecCceeEEeCCCCceEEEecCCcceeEEEEecCcceEEEEEeCCcEEEEcCCChh
Q 009912 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQ 80 (522)
Q Consensus 1 m~~~~~f~~i~~~~~g~~~~G~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~ 80 (522)
|+++++|+|||++++|+..+|+|||+++||+||+++||++++|+++||..+.|+|++|+|+|||.+|+|.+|+|+||+++
T Consensus 1 mae~l~fn~iyl~~~G~~~~G~lkit~~gi~~K~~~ggk~~~v~~sei~~~~w~k~~r~~~LrV~tk~g~~~~~~GF~d~ 80 (615)
T KOG0526|consen 1 MAESLEFNDIYLEVSGHLKPGTLKITESGIGFKNSKGGKVVTVPASEIDKVKWQKGVRGYGLRVFTKDGGVYRFDGFRDD 80 (615)
T ss_pred CCcccccCceEEecccccccceEEEccCceeEeeCCCCceEEeehHHhhhhhhhhhccccceEEEccCCceEEecCcCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCceeeeeeeeeeeeeeEecCceEEEEeCCEeEEEEeccccccccccCCCeEEEEEecCCCCCCC
Q 009912 81 DVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGAN 160 (522)
Q Consensus 81 d~~~l~~~~~~~~~~~l~~~e~s~~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~KnEv~lef~~~~~~~~~ 160 (522)
|+++|++||+++|++++++++||++|||||++.|.|+.|+|.+++||+|||||++|||| ++|||||+||||++|++
T Consensus 81 d~~~L~~ff~~~~~~~i~qkel~ikGwNwGea~~~G~~l~F~~~skpiFEIP~s~Vsn~-l~gKNEv~LEFh~nDda--- 156 (615)
T KOG0526|consen 81 DLEKLKSFFSSNFSITIEQKELSIKGWNWGEADFKGQELVFDVNSKPIFEIPLSDVSNT-LTGKNEVTLEFHQNDDA--- 156 (615)
T ss_pred HHHHHHHHHHHhhccchhhheeeecccccccccccCcEEEEeeCCceeEEeehhhhhhh-hcCCceEEEEEeccCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999 77999999999999984
Q ss_pred CCCceeEEEEEeCCCCCccCCCCCCChHHHHHHHHHhhcccccCCCcceEEEcCeeEEcCCcceEEEEeeccEEEecccc
Q 009912 161 EKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240 (522)
Q Consensus 161 ~~d~L~EmRf~iP~~~~~~~~~~~~~~a~~f~~~i~~ka~i~~~~g~~i~~f~dI~~ltPRGRydie~~~~~lrl~gkt~ 240 (522)
+.+|||||||||.+.. .| ++++++++|++.|+++||+++++|++||+|++|+|+||||||+|+||+++||||||||
T Consensus 157 -~~~LmEmRF~iP~d~~--~g-ed~~~~e~F~~~v~~kAdv~~~~gdaI~~f~~i~~lTPRGRYdI~iy~t~lrL~GkTy 232 (615)
T KOG0526|consen 157 -PVGLMEMRFHIPEDQE--DG-EDRDKVEAFYENVLAKADVSSAVGDAIVSFEEILCLTPRGRYDIKIYPTFLRLHGKTY 232 (615)
T ss_pred -CcceEEEEEecCcccc--cc-ccccHHHHHHHHHHHhcCcccccCCceEEeeeeeeecCCccceeEEehhhhhhccccc
Confidence 6779999999996543 22 4579999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeccceeEEEeeecCCCCeEEEEEecCCCccCCCccCceEEEEEeccceeeeeccCCHHHHhhHhhcccccccccch
Q 009912 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLI 320 (522)
Q Consensus 241 dykI~y~~I~r~FlLP~pd~~~~~~vi~Ld~PirqGqTky~~lv~QF~~e~~~~~elnl~eeel~ek~~~kL~~~~~g~~ 320 (522)
||||||++|.|+|+|||+|++|+||||+|+||||||||||||||+||.++++++++|++++++|+++|+++|+++|+||+
T Consensus 233 DyKI~y~SI~rLflLPk~d~rh~~fVisldPPIRQGQTrY~~LV~qF~kDee~e~eLslsdE~l~~k~~~kL~k~ysg~i 312 (615)
T KOG0526|consen 233 DYKIPYKSINRLFLLPKKDQRHVYFVISLDPPIRQGQTRYPFLVLQFGKDEEVELELSLSDEELEEKYKGKLKKEYSGPI 312 (615)
T ss_pred ceecchhheeeeEeccCCCCceEEEEEecCCccccCccccceEEEEeccccceeEeecccHHHHhhhhcchhhhhcCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCeeeccCCcccCCCCceeEeeccCceeEEEeccCceeecccCCEEEEcCceEEEEEEEecCCCccee
Q 009912 321 HEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMH 400 (522)
Q Consensus 321 ~ev~~~i~k~l~~~ki~~P~~F~s~~g~~~VkCs~Ka~~G~LypLe~~~lfl~KPp~~I~~~eI~~V~f~Rv~~~~~~~r 400 (522)
|+||+++||+|||+||++||.|.|+.|++||+|++||++|+||||++|||||||||+||+|+||++|+|+|++.+++++|
T Consensus 313 ~Ev~s~V~k~L~~rKit~Pg~F~s~~g~~av~CS~KAneG~LYPLekgFlFl~KP~l~I~f~EIS~V~fsR~~~s~t~tr 392 (615)
T KOG0526|consen 313 YEVFSIVMKALCGRKITVPGEFLSHSGTAAVKCSFKANEGLLYPLEKGFLFLPKPPLYIRFEEISSVNFSRSGLSGTSTR 392 (615)
T ss_pred HHHHHHHHHHHhCceeeccccccccCCCceeeeeecccCceEeecccceEeecCCceEeeccceeeEEEEeccCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987677789
Q ss_pred eEEEEEEEecCceEEEeeechhhhhhHHHHHhcCCcEEEeCCCCcccc-hhhhhcccCCCCCCCchHHHhhccCCCCCCC
Q 009912 401 YFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTD-GVAAVLQEDDDDAVDPHLERIKNEAGGDESD 479 (522)
Q Consensus 401 TFDl~v~~K~g~~~~Fs~I~reE~~~L~~fl~~k~i~i~n~~~~~~~~-~~~~~~~~~~d~~~d~~~~~~~~~~~dddde 479 (522)
||||+|++|+|.+|+|++|+|+||..|++||++|+|+|+|++...+.- .++.+.+++.++++| .+.++.||++
T Consensus 393 tFD~ei~lk~g~~~tFs~i~keE~~~L~~fl~sK~lki~N~~~~~~~D~~~~~~~~e~~~~edd------~~d~~~de~~ 466 (615)
T KOG0526|consen 393 TFDFEITLKSGTSYTFSNISKEEYGKLFDFLNSKGLKIRNEGREDEIDEYLATLKAEDRDEEDD------SDDSSTDEDE 466 (615)
T ss_pred eEEEEEEEcCCCeeeecccCHHHHHHHHHHHhhcCceeecCCcccccchHHhhhccccchhhhc------ccccccccch
Confidence 999999999999999999999999999999999999999996532211 122222222222221 1123345678
Q ss_pred ccCcCCcC--CCCCCCCCCCCCCCCCCCCc
Q 009912 480 EEDSDFVA--DKDDGGSPTDDSGEEDSDAS 507 (522)
Q Consensus 480 eeDeDF~~--~~sd~~ee~Ds~~~~~~~~~ 507 (522)
|+||||+. +++||+|||||+..+++|++
T Consensus 467 e~Dedf~~~~~~d~vaee~dS~~~ds~~~e 496 (615)
T KOG0526|consen 467 EEDEDFKPGEEDDDVAEEFDSDEADSSDEE 496 (615)
T ss_pred hhhhhcccCccccccccccCCccccccccc
Confidence 99999996 45679999999433344433
No 2
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=100.00 E-value=6e-137 Score=1035.16 Aligned_cols=499 Identities=33% Similarity=0.596 Sum_probs=460.5
Q ss_pred CcccceEecCCCCCCCeeEEEecCceeEEeC-CCCceEEEecCCcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHH
Q 009912 5 PSFNNISLGGRGGTNPGQLKIYSGKISWKKL-GGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVA 83 (522)
Q Consensus 5 ~~f~~i~~~~~g~~~~G~lk~~~~gl~wK~~-~~g~~~~i~~~di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~ 83 (522)
..|++||++. +..+|++||+.+|||||.+ ..-+++|++.++|+.++|+|++|||.|+|.+|+..+|.+|||.++|++
T Consensus 3 t~~D~iyln~--s~k~g~~rIa~sGlgwK~s~s~~~pftlp~~Ev~~~~wsrg~Rgy~lkI~~k~~~v~~ldgfsQ~d~d 80 (508)
T COG5165 3 TLNDCIYLND--SDKKGTVRIARSGLGWKASDSERKPFTLPRNEVKDAEWSRGVRGYKLKIRVKGNAVYELDGFSQNDID 80 (508)
T ss_pred cccceeEecc--cccCceEEEcCCCceeecCCccCCceeechhHhhHHHHhhhcccceEEEEEcCCCceEecCcCHHHHH
Confidence 4799999999 9999999999999999954 334799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCceeeeeeeeeeeeeeEecCceEEEEeCCEeEEEEeccccccccccCCCeEEEEEecCCCCCCCCCC
Q 009912 84 TLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKD 163 (522)
Q Consensus 84 ~l~~~~~~~~~~~l~~~e~s~~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~KnEv~lef~~~~~~~~~~~d 163 (522)
.|++.|+++|+|.+++||||++|||||++.|.|++++|.+|+||+||||+++|.|+|+++||||+|||...|.....++|
T Consensus 81 ~lkn~f~~~F~i~~eqkE~si~gwnwGe~~~~g~e~vf~~N~kp~FEIP~~~i~ntnl~~kNEv~vef~~~de~~~pa~d 160 (508)
T COG5165 81 ELKNIFSEYFRITLEQKELSIAGWNWGELGINGQEAVFFRNTKPIFEIPVDDIENTNLDIKNEVSVEFRIQDEEYQPAGD 160 (508)
T ss_pred HHHHHHHHheeeeEEEeeeeeccccccccccccceeeeeecCCeeEEeehhhhccccccccceeEEEEeccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877776677889
Q ss_pred ceeEEEEEeCCCCCccCC---C-CCCChHHHHHHHHHhhcccccCCCcceEEEcCeeEEcCCcceEEEEeeccEEEeccc
Q 009912 164 SLMEISFHIPNSNTQFVG---D-ENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQA 239 (522)
Q Consensus 164 ~L~EmRf~iP~~~~~~~~---~-~~~~~a~~f~~~i~~ka~i~~~~g~~i~~f~dI~~ltPRGRydie~~~~~lrl~gkt 239 (522)
+|||||||+|++.+++++ + -|+++|++||+.|++|||||+++||+|++|.+|+++||||||+|+||.++|||+|||
T Consensus 161 elvEmRfy~pg~~~kEd~a~Ge~vek~~a~~fye~lkekadige~agDaIvsf~~~~l~tPRGrydid~y~~~lRLrGkt 240 (508)
T COG5165 161 ELVEMRFYSPGVKTKEDIAGGESVEKSMAEAFYEELKEKADIGESAGDAIVSFEGLSLATPRGRYDIDFYRDYLRLRGKT 240 (508)
T ss_pred cceEEEEecCCCcchhhccCcchhhHHHHHHHHHHHhhhcccccccccceeeeeceeeecCCccccchhhhhhhhhcccc
Confidence 999999999997665442 2 356899999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeeccceeEEEeeecCCCCeEEEEEecCCCccCCCccCceEEEEEeccceeeeeccCCHHHHhhHhhcccccccccc
Q 009912 240 NDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGL 319 (522)
Q Consensus 240 ~dykI~y~~I~r~FlLP~pd~~~~~~vi~Ld~PirqGqTky~~lv~QF~~e~~~~~elnl~eeel~ek~~~kL~~~~~g~ 319 (522)
|||||.|++|+++|+||++++.|.++||+++||||||||||||||+||.++++++++||+.++.++++|+++|+.+|+|+
T Consensus 241 YdyKi~y~sI~~l~~LpK~dd~h~~~Vig~ePPlRQGQTrYpflV~qF~kded~Ev~Lnvede~~~e~y~dklK~~Yd~~ 320 (508)
T COG5165 241 YDYKIYYKSIKMLYVLPKIDDGHRYVVIGAEPPLRQGQTRYPFLVVQFQKDEDVEVELNVEDEDYEENYKDKLKGEYDGL 320 (508)
T ss_pred cceeeeeeeeeEEEEeccCCCccEEEEEecCCcccCCCccCCeEEEEEecccceeeeeccchhhhhhhHHHhhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcCCeeeccCCcccCCCCceeEeeccCceeEEEeccCceeecccCCEEEEcCceEEEEEEEecCCCcce
Q 009912 320 IHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNM 399 (522)
Q Consensus 320 ~~ev~~~i~k~l~~~ki~~P~~F~s~~g~~~VkCs~Ka~~G~LypLe~~~lfl~KPp~~I~~~eI~~V~f~Rv~~~~~~~ 399 (522)
+++||+++|++||++|+++|+.|.|+.|+.||+|++||++|+||||++||||++||+++|+++||..|+|+|+|.+++++
T Consensus 321 ~~ev~s~v~~gLt~rkvv~p~ef~S~~g~~av~Cs~KAnEGqLYpLD~~flFlpKptl~l~~sdis~V~~SRig~ss~~a 400 (508)
T COG5165 321 LSEVFSEVMEGLTVRKVVRPSEFESRDGMRAVRCSMKANEGQLYPLDDCFLFLPKPTLRLDLSDISLVEFSRIGLSSMQA 400 (508)
T ss_pred HHHHHHHHHHhhcceeeecchhhcccCCceeeeeeeeccCceEeeccceEEeccCceEEeecccceEEEEeecccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred eeEEEEEEEecCceEEEeeechhhhhhHHHHHhcCCcEEEeCCCCcccchhhhhcccCCCCCCCchHHHhhccCCCCCCC
Q 009912 400 HYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESD 479 (522)
Q Consensus 400 rTFDl~v~~K~g~~~~Fs~I~reE~~~L~~fl~~k~i~i~n~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~~~~dddde 479 (522)
|||||+++++++..++|++|+|+|+..|.+||++||||++|+ +.++ .....+++..|++ ++.++++.++|+
T Consensus 401 rTFDlt~~lrs~~sytF~nisk~Eq~aLeqfl~sK~ik~~ne-~~~e--~~qt~lgs~sD~E------d~~~~~~~eede 471 (508)
T COG5165 401 RTFDLTLFLRSPGSYTFNNISKDEQGALEQFLHSKGIKARNE-EVQE--RLQTDLGSISDSE------DINMGSAGEEDE 471 (508)
T ss_pred ceeeEEEEEecCCceeecCcCHHHHHHHHHHHhccCceecch-hhhh--hhhhccccccchh------hhcccccccccc
Confidence 999999999999999999999999999999999999999998 2122 2333333322221 255667778899
Q ss_pred ccCcCCcC-CCCCCCCCCCCCCCCCCCCccCCCCcccc
Q 009912 480 EEDSDFVA-DKDDGGSPTDDSGEEDSDASESGGEKEQR 516 (522)
Q Consensus 480 eeDeDF~~-~~sd~~ee~Ds~~~~~~~~~~~~~~~~~~ 516 (522)
++|||||. ++||||||||++|+ .||++..+ +.|||
T Consensus 472 sedEdfq~~sdsDvaeEyD~~a~-~sd~eg~s-~~e~~ 507 (508)
T COG5165 472 SEDEDFQMVSDSDVAEEYDLQAA-LSDAEGGS-DEERP 507 (508)
T ss_pred ccccccceeeccchhhhhccchh-hccccCCC-cccCC
Confidence 99999997 99999999999997 44554433 34455
No 3
>PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin. An 81kDa protein is predicted, containing several highly-charged domains and a stretch of 75 residues that share 47% identity with a portion of the high mobility group (HMG) protein HMG1. This HMG box probably constitutes the structure recognition element for cisplatin-modified DNA, the probable recognition motif being the local duplex unwinding and bending that occurs on formation of intra-strand cross-links []. SSRP1 is the human homologue of a recently identified mouse protein that binds to recombination signal sequences []. These sequences have been postulated to form stem-loop structures, further implicating local bends and unwinding in DNA as a recognition target for HMG-box proteins. A Drosophila melanogaster cDNA encoding an HMG-box-containing protein has also been isolated [, ]. This protein shares 50% sequence identity with human SSRP1. In vitro binding studies using Drosophila SSRP showed that the protein binds to single-stranded DNA and RNA, with highest affinity for nucleotides G and U. Comparison of the predicted amino acid sequences among SSRP family members reveals 48% identity, with structural conservation in the C terminus of the HMG box, as well as domains of highly charged residues. The most highly conserved regions lie in the poorly understood N terminus, suggesting that this portion of the protein is critical for its function []. This entry contains Pob3 Q04636 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p (IPR013953 from INTERPRO)-Pob3p) []. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 3F5R_A 2GCL_B 2GCJ_D.
Probab=100.00 E-value=4e-85 Score=638.07 Aligned_cols=222 Identities=49% Similarity=0.863 Sum_probs=111.7
Q ss_pred EcCCChhhHHHHHHHHHhhcCCCCceeeeeeeeeeeeeeEecCceEEEEeCCEeEEEEeccccccccccCCCeEEEEEec
Q 009912 74 FTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHV 153 (522)
Q Consensus 74 fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~KnEv~lef~~ 153 (522)
||||+++|+++|+++|++||+++|+++|||+||||||+++|+|++|+|.|+|||||||||++|||||++|||||+||||+
T Consensus 1 FdGF~~~D~~~L~~~~k~~y~i~le~~els~kGwNWG~~~~~g~~L~F~v~~K~aFEIPl~~Vsn~n~~gKNEV~lEF~~ 80 (222)
T PF03531_consen 1 FDGFKEEDFEKLKKFFKKNYDIELEEKELSVKGWNWGKADFEGSELVFNVDNKPAFEIPLSDVSNCNLAGKNEVALEFHQ 80 (222)
T ss_dssp EEEE-GGGHHHHHHHHHHHH----EE-SSTTTT-----------------------------------------------
T ss_pred CcCCCHHHHHHHHHHHHHHcCCCCcccceecCCEeeceeEEcCCEEEEEECCeEEEEeeHHHhhhccCCCCCEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCCCCCccCCCCCCChHHHHHHHHHhhcccccCCCcceEEEcCeeEEcCCcceEEEEeeccE
Q 009912 154 DDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFL 233 (522)
Q Consensus 154 ~~~~~~~~~d~L~EmRf~iP~~~~~~~~~~~~~~a~~f~~~i~~ka~i~~~~g~~i~~f~dI~~ltPRGRydie~~~~~l 233 (522)
+|++..+++|+|||||||||++..+.++|++.++|++|+++||+||+|++++|++||+|++|+|+||||||+|+||+++|
T Consensus 81 ~d~~~~~~~D~LvEmRFyvP~~~~~~~~Dee~~~a~~f~~~i~~ka~i~~~~g~~i~~f~~i~~ltPRGRydi~~y~~~l 160 (222)
T PF03531_consen 81 DDDAEVANEDSLVEMRFYVPGTEKEEDEDEEDSAAEAFYDTILEKADIGQVSGDAIASFEDILCLTPRGRYDIEMYPTFL 160 (222)
T ss_dssp ----------------------------------------------------TTSSEEEEEEEEEETTEEEEEEE-SSEE
T ss_pred CCCCCCCCCCEEEEEEEEcCCCCCcccccccccHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 99875557899999999999985555556678999999999999999999999999999999999999999999999999
Q ss_pred EEecccceeEeeccceeEEEeeecCCCCeEEEEEecCCCccCCCccCceEEEEEeccceeee
Q 009912 234 RLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQS 295 (522)
Q Consensus 234 rl~gkt~dykI~y~~I~r~FlLP~pd~~~~~~vi~Ld~PirqGqTky~~lv~QF~~e~~~~~ 295 (522)
|||||||||||+|++|.|+|+||+||++|++|||+|+|||||||||||||||||.+++++++
T Consensus 161 rl~GktyDykI~y~~I~rlflLpk~d~~~~~~Vi~LdpPiRQGQT~Y~~lV~qf~~de~~~~ 222 (222)
T PF03531_consen 161 RLHGKTYDYKIQYSSISRLFLLPKPDDRHVFFVISLDPPIRQGQTRYPFLVMQFSKDEEVEV 222 (222)
T ss_dssp EEEESSBEEEEEGGGEEEEEEEE-TTSSEEEEEEEEEEEEEETTEEEEEEEEEEETT-EEE-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999987753
No 4
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.98 E-value=4.7e-32 Score=294.01 Aligned_cols=217 Identities=16% Similarity=0.230 Sum_probs=169.5
Q ss_pred EEcCeeEEcC-Cc---ceEEEEeeccEEEeccc-ceeEeeccceeEEEeeecCCCCeEEEEEecCCCccCCCccCceEEE
Q 009912 211 TFEGIAILTP-RG---RYSVELHLSFLRLQGQA-NDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVL 285 (522)
Q Consensus 211 ~f~dI~~ltP-RG---Rydie~~~~~lrl~gkt-~dykI~y~~I~r~FlLP~pd~~~~~~vi~Ld~PirqGqTky~~lv~ 285 (522)
.|.||.+.+| +| ...|++|.|+||+.+-. -..+|+|+||+|+|||||..++++++||||.+||+.|++|+. .+
T Consensus 607 ~L~dlyiRp~i~~Kr~~G~lEaH~NGfRy~s~R~~~vdiLfsNIKhafFqpc~~Emi~llHfHLknpIm~GkkK~~--dV 684 (960)
T KOG1189|consen 607 KLKDLYIRPNIDTKRIPGSLEAHENGFRYQSLRDERVDILFSNIKHAFFQPCEGEMIILLHFHLKNPIMVGKKKTK--DV 684 (960)
T ss_pred chhheEecCCccccccccceeeecCceeeeeccccchhhhhhhhhhhhcCccccceeeEeeehhccceeeccccee--ee
Confidence 8999998877 44 49999999999999832 368899999999999999999999999999999999999987 89
Q ss_pred EEeccceeeee--c-----cCCHHHHhh-HhhcccccccccchHHHHHHHHhhhcCCeee--ccCCcccCCCCceeEeec
Q 009912 286 QFETDYVVQSE--L-----LMSEELLNT-KYKDKLEPSYKGLIHEVFTTILRGLSGAKIT--KPGKFRSAQDGYAVKSSL 355 (522)
Q Consensus 286 QF~~e~~~~~e--l-----nl~eeel~e-k~~~kL~~~~~g~~~ev~~~i~k~l~~~ki~--~P~~F~s~~g~~~VkCs~ 355 (522)
|||+|. .++. + ..+.++|++ +.++..+..++ ..|.-|+.....++.-.+. +|-.-.+++|.| +
T Consensus 685 QFY~Ev-~div~dlg~~~~~~D~del~~EQ~Er~rr~~ln-~~FksF~~kv~~~~~~~~efd~pfr~lGF~GvP-----~ 757 (960)
T KOG1189|consen 685 QFYREV-GDIVTDLGKRRRMGDRDELEQEQEERDRRAKLN-MAFKSFAEKVAEATESELEFDVPFRELGFNGVP-----F 757 (960)
T ss_pred eeeehh-hhHHHhhccCccccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccceeeccchhhcCcCCCC-----c
Confidence 999983 3332 2 124555543 22222222222 1244445444455544333 354444566655 5
Q ss_pred cCceeEEEeccCceeecccCC-EEEEcCceEEEEEEEecCCCcceeeEEEEEEEecC--ceEEEeeechhhhhhHHHHHh
Q 009912 356 KAEDGVLYPLEKSFFFLPKPP-TLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE--QEHLFRNIQRNEYHNLFDFIS 432 (522)
Q Consensus 356 Ka~~G~LypLe~~~lfl~KPp-~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g--~~~~Fs~I~reE~~~L~~fl~ 432 (522)
++ ..+|.|+..||+-+..+| ++|.++||+.|+|+||+.+ .|||||+|++|+. .+.++++||.+.+++|++||.
T Consensus 758 rs-sv~i~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~---lKnfDmvfIfKd~~k~v~~i~svp~~sLd~iKEWLd 833 (960)
T KOG1189|consen 758 RS-SVFIQPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFG---LKNFDMVFIFKDFKKKVTMINSVPMESLDKLKEWLD 833 (960)
T ss_pred cc-eeeeecchhhhhccccCCceEEeecceeeeeeeeeeec---cccceEEEEeccccccceeeeccchhhhhHHHHhhh
Confidence 65 789999999999998755 6899999999999999987 6999999999996 688999999999999999999
Q ss_pred cCCcEEEe
Q 009912 433 GKGLKIMN 440 (522)
Q Consensus 433 ~k~i~i~n 440 (522)
+|+|++.-
T Consensus 834 scDI~y~E 841 (960)
T KOG1189|consen 834 SCDIKYTE 841 (960)
T ss_pred cccceeec
Confidence 99999985
No 5
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=99.95 E-value=1.1e-28 Score=212.78 Aligned_cols=92 Identities=48% Similarity=0.752 Sum_probs=81.7
Q ss_pred CceeEeeccCceeEEEeccCceee-cccCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEec--CceEEEeeechhhh
Q 009912 348 GYAVKSSLKAEDGVLYPLEKSFFF-LPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKT--EQEHLFRNIQRNEY 424 (522)
Q Consensus 348 ~~~VkCs~Ka~~G~LypLe~~~lf-l~KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~--g~~~~Fs~I~reE~ 424 (522)
++||+|++||++|+||||++||+| ++||+++|+++||++|+|+|++ +.++|||||+|++|+ +++++|+||+|+|+
T Consensus 1 f~~V~c~~ka~~g~L~pl~~~l~f~~~kP~~~i~~~dI~~v~feRv~--~~~~ktFDl~v~~k~~~~~~~~fs~I~~~e~ 78 (95)
T PF08512_consen 1 FYGVKCSYKANEGFLYPLEKCLLFGLEKPPFVIPLDDIESVEFERVS--SFSSKTFDLVVILKDYEGPPHEFSSIDREEY 78 (95)
T ss_dssp -EEEEEEETTEEEEEEEESSEEEEECSSS-EEEEGGGEEEEEEE--E--SSSSSEEEEEEEETT-TS-EEEEEEEEGGGH
T ss_pred CCceeEeccccCEEEEEccceEEEecCCCeEEEEhhHeeEEEEEecc--cCcceEEEEEEEEecCCCCcEEEeeECHHHH
Confidence 479999999999999999999999 8999999999999999999982 223699999999999 78999999999999
Q ss_pred hhHHHHHhcCCcEEEeC
Q 009912 425 HNLFDFISGKGLKIMNL 441 (522)
Q Consensus 425 ~~L~~fl~~k~i~i~n~ 441 (522)
+.|++||++|||+++|+
T Consensus 79 ~~l~~~l~~~~i~~~~~ 95 (95)
T PF08512_consen 79 DNLKDFLKSKNIKIKNE 95 (95)
T ss_dssp HHHHHHHHHCCHHCCCH
T ss_pred HHHHHHHHHCCCEeecC
Confidence 99999999999999884
No 6
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.94 E-value=3.5e-26 Score=244.41 Aligned_cols=219 Identities=16% Similarity=0.246 Sum_probs=162.4
Q ss_pred EEEcCeeEEc-CCcc---eEEEEeeccEEEeccc---ceeEeeccceeEEEeeecCCCCeEEEEEecCCCccCCCccCce
Q 009912 210 VTFEGIAILT-PRGR---YSVELHLSFLRLQGQA---NDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPH 282 (522)
Q Consensus 210 ~~f~dI~~lt-PRGR---ydie~~~~~lrl~gkt---~dykI~y~~I~r~FlLP~pd~~~~~~vi~Ld~PirqGqTky~~ 282 (522)
..+.++-+.+ |+|| ..|++|.|++|+++.- -..+|+|+||+|+||+||..+.++++||||..||+.|+.|..
T Consensus 652 ~~~~~~~vRp~~d~KR~pg~~eiHeNGiRfqsplrsds~idiLFSNikhlfFq~c~gEliviiH~HLk~PIl~GkrKvq- 730 (1001)
T COG5406 652 DVYMKTDVRPGSDGKRKPGNLEIHENGIRFQSPLRSDSHIDILFSNIKHLFFQECNGELIVIIHFHLKSPILTGKRKVQ- 730 (1001)
T ss_pred chhhhcccccCCCcCccCccEEEecCceeecCCcccCceeEEeeccchhheeccCCceEEEEEEEeecCceecCCceee-
Confidence 3445555543 3654 8899999999999863 258899999999999999999999999999999999998876
Q ss_pred EEEEEeccceeeeec-----------cCCHHHHhhHhhcccccccccchHHHHHHHHhhhcCCeee--ccCCcccCCCCc
Q 009912 283 IVLQFETDYVVQSEL-----------LMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKIT--KPGKFRSAQDGY 349 (522)
Q Consensus 283 lv~QF~~e~~~~~el-----------nl~eeel~ek~~~kL~~~~~g~~~ev~~~i~k~l~~~ki~--~P~~F~s~~g~~ 349 (522)
.+|||+|. ..+.+ --+++|+++..+.+-.+.--...|.-|+..+...++-+|+ +|-.-.++.|.|
T Consensus 731 -dVQFYREa-sd~~vdeTg~~~rk~~ygdedElEqEqeerrrraald~eFksFa~~Iaeas~gri~~~~~fr~lgF~GVP 808 (1001)
T COG5406 731 -DVQFYREA-SDTMVDETGKRGRKEHYGDEDELEQEQEERRRRAALDQEFKSFASSIAEASEGRIEFKVQFRKLGFYGVP 808 (1001)
T ss_pred -eeeeeecc-cccchhhhccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEeeechhccccCCc
Confidence 88999984 22221 1144555443222111111112234444444444433333 233333455554
Q ss_pred eeEeeccCceeEEEeccCceeecccCCE-EEEcCceEEEEEEEecCCCcceeeEEEEEEEecC--ceEEEeeechhhhhh
Q 009912 350 AVKSSLKAEDGVLYPLEKSFFFLPKPPT-LILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE--QEHLFRNIQRNEYHN 426 (522)
Q Consensus 350 ~VkCs~Ka~~G~LypLe~~~lfl~KPp~-~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g--~~~~Fs~I~reE~~~ 426 (522)
+++ ..++.|+..||+-+..||+ +|.++||+.|+|+||..| .+||||++++++. ....++.||.+.++.
T Consensus 809 -----fRs-~V~~~pTtdCLVqL~e~Pf~VitLeevEi~~lERVqfg---lKnfD~vFi~~df~rp~vhIntvpvesld~ 879 (1001)
T COG5406 809 -----FRS-SVMIKPTTDCLVQLDEAPFFVITLEEVEIVNLERVQFG---LKNFDVVFILRDFYRPLVHINTVPVESLDK 879 (1001)
T ss_pred -----ccc-ceeeecchhheeeccCCceEEEEecceeEEeeeeEEee---cccceEEEEeccccCCcceeccccHHHHHH
Confidence 443 6799999999999999986 799999999999999987 6999999999995 678899999999999
Q ss_pred HHHHHhcCCcEEEe
Q 009912 427 LFDFISGKGLKIMN 440 (522)
Q Consensus 427 L~~fl~~k~i~i~n 440 (522)
|++||.+++|.++-
T Consensus 880 lKewLds~di~f~e 893 (1001)
T COG5406 880 LKEWLDSNDILFME 893 (1001)
T ss_pred HHHHhhhcCceeEe
Confidence 99999999999885
No 7
>PF14470 bPH_3: Bacterial PH domain
Probab=95.90 E-value=0.063 Score=45.19 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=60.2
Q ss_pred eeEeecc----CceeEEEeccCceeecccCC------EEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCceEEEeee
Q 009912 350 AVKSSLK----AEDGVLYPLEKSFFFLPKPP------TLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNI 419 (522)
Q Consensus 350 ~VkCs~K----a~~G~LypLe~~~lfl~KPp------~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~~~Fs~I 419 (522)
.+.|.++ ...|+|+.+++=++|+.+.+ .-|++++|.+|++...-. ..+ +.|.+ ++..++|.+|
T Consensus 10 ~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~----~~~--i~i~~-~~~~~~i~~i 82 (96)
T PF14470_consen 10 VAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGIL----GGK--ITIET-NGEKIKIDNI 82 (96)
T ss_pred EEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcccc----ccE--EEEEE-CCEEEEEEEc
Confidence 4567766 78999999999999985431 369999999999985221 122 66666 6789999999
Q ss_pred chhhhhhHHHHHhc
Q 009912 420 QRNEYHNLFDFISG 433 (522)
Q Consensus 420 ~reE~~~L~~fl~~ 433 (522)
++.+.+.+.+++++
T Consensus 83 ~k~~~~~~~~~i~~ 96 (96)
T PF14470_consen 83 QKGDVKEFYEYIKE 96 (96)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998863
No 8
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=95.74 E-value=0.046 Score=47.36 Aligned_cols=73 Identities=23% Similarity=0.278 Sum_probs=61.3
Q ss_pred CCCeeEEEecCceeEEeCCCCceEEEecCCcceeEEEEe----cCcceEEEEEeC--CcEEEEcCCChhhHHHHHHHHHh
Q 009912 18 TNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKV----PRTNQLGVRTKD--GLYYKFTGFRDQDVATLTNFFQS 91 (522)
Q Consensus 18 ~~~G~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~----~~~~~Lri~~k~--~~~~~fdGF~~~d~~~l~~~~~~ 91 (522)
...|-|-..+.+|.|=-.+ -.+.|+-+||..+...|+ .|.+.|.|.+|+ +..++|.+...++++.|++|+++
T Consensus 10 a~~g~L~pl~~~l~f~~~k--P~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I~~~e~~~l~~~l~~ 87 (95)
T PF08512_consen 10 ANEGFLYPLEKCLLFGLEK--PPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSIDREEYDNLKDFLKS 87 (95)
T ss_dssp TEEEEEEEESSEEEEECSS--S-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEEEGGGHHHHHHHHHH
T ss_pred ccCEEEEEccceEEEecCC--CeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeECHHHHHHHHHHHHH
Confidence 4679999999999993221 368999999999999997 399999999998 89999999999999999999997
Q ss_pred h
Q 009912 92 N 92 (522)
Q Consensus 92 ~ 92 (522)
.
T Consensus 88 ~ 88 (95)
T PF08512_consen 88 K 88 (95)
T ss_dssp C
T ss_pred C
Confidence 6
No 9
>PF14470 bPH_3: Bacterial PH domain
Probab=91.38 E-value=1.5 Score=36.70 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=64.7
Q ss_pred CCCCeeEEEecCceeEEeCC---CCceEEEecCCcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHh
Q 009912 17 GTNPGQLKIYSGKISWKKLG---GGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQS 91 (522)
Q Consensus 17 ~~~~G~lk~~~~gl~wK~~~---~g~~~~i~~~di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~ 91 (522)
...+|.+-+++.-|-+...+ +.....++-++|.++.|.+.--+..+.|.+ ++..++|+-+...+.+++.+++++
T Consensus 20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~-~~~~~~i~~i~k~~~~~~~~~i~~ 96 (96)
T PF14470_consen 20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET-NGEKIKIDNIQKGDVKEFYEYIKE 96 (96)
T ss_pred cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE-CCEEEEEEEcCHHHHHHHHHHHhC
Confidence 56789999999999888765 246799999999999999988888899998 888999999999999999888764
No 10
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=90.17 E-value=0.27 Score=54.30 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=62.6
Q ss_pred ceeEEEeccCceeec-cc--CCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCceEEEeeechhhhhhHHHHHhcC
Q 009912 358 EDGVLYPLEKSFFFL-PK--PPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGK 434 (522)
Q Consensus 358 ~~G~LypLe~~~lfl-~K--Pp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~~~Fs~I~reE~~~L~~fl~~k 434 (522)
+.|.|=..+.||.|- .| -++.|+-+||..|+.+|++ |...|.|.+|+|..|+|.+..+++++.|.+|+++.
T Consensus 19 ~~G~lkit~~gi~~K~~~ggk~~~v~~sei~~~~w~k~~------r~~~LrV~tk~g~~~~~~GF~d~d~~~L~~ff~~~ 92 (615)
T KOG0526|consen 19 KPGTLKITESGIGFKNSKGGKVVTVPASEIDKVKWQKGV------RGYGLRVFTKDGGVYRFDGFRDDDLEKLKSFFSSN 92 (615)
T ss_pred ccceEEEccCceeEeeCCCCceEEeehHHhhhhhhhhhc------cccceEEEccCCceEEecCcCHHHHHHHHHHHHHh
Confidence 478888899999995 33 2488999999999999963 88999999999999999999999999999999864
No 11
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.81 E-value=4.6 Score=38.32 Aligned_cols=89 Identities=20% Similarity=0.406 Sum_probs=70.2
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCC-----Cceeeeeeee---------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGIS-----PEEKQLSVSG--------------- 106 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~-----l~~~e~s~~G--------------- 106 (522)
++-.++|.+.+|++-|||+..+- .|..-+|-++++..+..-+++. -+.=|+|..|
T Consensus 24 ELv~ve~~~~~~~~~lrI~id~~-----g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGldRpL~~~~~f~r~~ 98 (153)
T COG0779 24 ELVDVEFVKEGRDSVLRIYIDKE-----GGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLDRPLKTAEHFARFI 98 (153)
T ss_pred EEEEEEEEEcCCCcEEEEEeCCC-----CCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCCCCcCCHHHHHHhc
Confidence 56789999999999999998654 7888999999999999988843 3345666666
Q ss_pred ---------------eee-ee-eEecCceEEEEeCCEeEEEEeccccccccc
Q 009912 107 ---------------RNW-GE-VDLNGNMLTFMVGQKQAFEVSLADVSQTQL 141 (522)
Q Consensus 107 ---------------wNw-G~-~~~~~~~l~f~v~~k~~feip~~~is~~~~ 141 (522)
-+| |+ +.+++..+.+.+++|+ .+||+++|+.+++
T Consensus 99 G~~Vkv~l~~~~~~~k~~~G~i~~~d~~~v~~~~~~k~-v~Ip~~~i~kArl 149 (153)
T COG0779 99 GEKVKVKLRLPIEGRKKFEGKIVAVDGETVTLEVDGKE-VEIPFSDIAKARL 149 (153)
T ss_pred CcEEEEEEecccCCceEEEEEEEEEcCCeEEEEECCEE-EEEEcccchhhee
Confidence 223 22 2346777899999999 9999999999876
No 12
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=87.20 E-value=1.5 Score=36.92 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=43.6
Q ss_pred CCCeeEEEecCc--eeEEeCCCC--ceEEEecCCcceeEEEEec-CcceEEEEEeCC
Q 009912 18 TNPGQLKIYSGK--ISWKKLGGG--KAVEVDKVDIAGVTWMKVP-RTNQLGVRTKDG 69 (522)
Q Consensus 18 ~~~G~lk~~~~g--l~wK~~~~g--~~~~i~~~di~~~~w~r~~-~~~~Lri~~k~~ 69 (522)
+.+|.|-|+++. +.|....++ .+++|+-++|...+=+.-+ -..+|||.++++
T Consensus 11 K~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 11 KKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKDD 67 (79)
T ss_dssp TEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETTS
T ss_pred cCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEecC
Confidence 578999999999 999996554 3499999999999999864 899999999987
No 13
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.86 E-value=0.4 Score=48.38 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=7.0
Q ss_pred CCccCcCCcC
Q 009912 478 SDEEDSDFVA 487 (522)
Q Consensus 478 deeeDeDF~~ 487 (522)
++++|+||+.
T Consensus 37 Eee~D~ef~~ 46 (240)
T PF05764_consen 37 EEEDDEEFES 46 (240)
T ss_pred ccCCCccccC
Confidence 3566888884
No 14
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=83.97 E-value=25 Score=35.17 Aligned_cols=149 Identities=14% Similarity=0.192 Sum_probs=101.7
Q ss_pred CCCCCeeEEEecCceeEEeCCCCceEEEecCCcceeEE--------EEecCcceEEEEEeCCcEEEEcCCChhhHHHHHH
Q 009912 16 GGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTW--------MKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTN 87 (522)
Q Consensus 16 g~~~~G~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w--------~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~ 87 (522)
+.+.+||+-|+...|..... +...+||-+.|..+.- ..+.....+++...++..+-.-..... ..+..
T Consensus 23 ~~W~~~rIiLs~~rlvl~~~--~~k~~Ipls~I~Di~~~~~~~~~~~~~~~~~si~~~~~~~~~v~~i~~~~~--~~~e~ 98 (221)
T PF04283_consen 23 GKWVKGRIILSNDRLVLAFN--DGKITIPLSSIEDIGVRLPPNQLLAFFSDYVSIKYKSDEGERVILISPEDS--KTIEK 98 (221)
T ss_pred CCcEEEEEEEecCEEEEEcC--CCeEEEecceeEecccccCccccccccCceEEEEEecCCCcEEEEEEcCCc--ccHHH
Confidence 46788999999999999974 4556999999988776 223344444444443333332223322 56667
Q ss_pred HHHhhcCCCCceeee-----eeee--------eeeeeeEecCceEEEEeCCEeEEEEecccccccc-----ccCCCeEEE
Q 009912 88 FFQSNFGISPEEKQL-----SVSG--------RNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQ-----LQGKNDVIL 149 (522)
Q Consensus 88 ~~~~~~~~~l~~~e~-----s~~G--------wNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~-----~~~KnEv~l 149 (522)
|....|+..|..+.. +++| |==|.+.+....+.|...++..+.|++++|..+- +.||.--+|
T Consensus 99 F~~~lf~~lL~~~~v~v~hpAi~GGvV~~d~~Wekg~l~v~~~~i~~~~~~~~~~~I~l~~V~~ve~~~r~V~g~~r~VL 178 (221)
T PF04283_consen 99 FETKLFRALLNGKEVLVKHPAIVGGVVQQDAEWEKGKLKVTKKGIWFASSSGQFVSIDLDDVGDVEREERTVNGKERPVL 178 (221)
T ss_pred HHHHHHHHhhCCeEEEEECCceecceeccCCccccceEEEeccceEEEecCCceeEEEecccceeeeeeeecCCccceEE
Confidence 777777766666554 3333 5568899999999999999999999999998874 446777788
Q ss_pred EEecCCCCCCCCCCceeEEEEEeCC
Q 009912 150 EFHVDDTTGANEKDSLMEISFHIPN 174 (522)
Q Consensus 150 ef~~~~~~~~~~~d~L~EmRf~iP~ 174 (522)
+..+-+ ..+-|+=-+|+|+
T Consensus 179 ~I~H~~------~g~sVtSyi~~~~ 197 (221)
T PF04283_consen 179 EIEHVE------DGESVTSYISIGP 197 (221)
T ss_pred EEEEec------CCcEEEEEEecCC
Confidence 884422 2456676777775
No 15
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=79.81 E-value=2.3 Score=49.79 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=12.0
Q ss_pred eechhhhhhHHHHHhcC
Q 009912 418 NIQRNEYHNLFDFISGK 434 (522)
Q Consensus 418 ~I~reE~~~L~~fl~~k 434 (522)
.|..+.++.|.+-|..+
T Consensus 619 ~~t~~~l~~ll~vl~~~ 635 (784)
T PF04931_consen 619 HLTESGLQLLLDVLDAK 635 (784)
T ss_pred hcCHHHHHHHHHHhccC
Confidence 36667778888887754
No 16
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=79.67 E-value=6.5 Score=42.03 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=49.8
Q ss_pred eEEEecCCcceeEEEEec------CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhh
Q 009912 40 AVEVDKVDIAGVTWMKVP------RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSN 92 (522)
Q Consensus 40 ~~~i~~~di~~~~w~r~~------~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~ 92 (522)
++.++-+||..+..+|++ |.|-|.+.+++++.|+|.|....++..|.+||+..
T Consensus 377 tl~l~~sdis~V~~SRig~ss~~arTFDlt~~lrs~~sytF~nisk~Eq~aLeqfl~sK 435 (508)
T COG5165 377 TLRLDLSDISLVEFSRIGLSSMQARTFDLTLFLRSPGSYTFNNISKDEQGALEQFLHSK 435 (508)
T ss_pred eEEeecccceEEEEeecccchhhhceeeEEEEEecCCceeecCcCHHHHHHHHHHHhcc
Confidence 688999999999999986 99999999999999999999999999999999864
No 17
>PRK14646 hypothetical protein; Provisional
Probab=79.08 E-value=20 Score=33.89 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=64.8
Q ss_pred CcceeEEEEecCcceEEEEEeCC-cEEEEcCCChhhHHHHHHHHHhhcCCC-C----ceeeeeee---------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDG-LYYKFTGFRDQDVATLTNFFQSNFGIS-P----EEKQLSVS--------------- 105 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~-~~~~fdGF~~~d~~~l~~~~~~~~~~~-l----~~~e~s~~--------------- 105 (522)
++-.++|.+-++.+-|||++-.- + .|..-+|-+.++..+...++.. + +.=|+|..
T Consensus 23 eLvdve~~~~~~~~~LrV~IDk~~g----~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldRpL~~~~df~r~ 98 (155)
T PRK14646 23 KICSLNIQTNQNPIVIKIIIKKTNG----DDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSDELTSERDFKTF 98 (155)
T ss_pred EEEEEEEEeCCCCeEEEEEEECCCC----CCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCCcCCCHHHHHHh
Confidence 46678999999999999998421 1 2578899999999999888743 1 11223322
Q ss_pred ----------eeeeeeeE-------ecCceEEEEeCCEeEEEEecccccccccc
Q 009912 106 ----------GRNWGEVD-------LNGNMLTFMVGQKQAFEVSLADVSQTQLQ 142 (522)
Q Consensus 106 ----------GwNwG~~~-------~~~~~l~f~v~~k~~feip~~~is~~~~~ 142 (522)
.-..|.-. +++..+++.++|++ ++||+++|+.+++.
T Consensus 99 ~G~~v~V~l~~~~~~~~~~~G~L~~~~~~~v~l~~~g~~-~~i~~~~I~ka~L~ 151 (155)
T PRK14646 99 KGFPVNVELNQKNSKIKFLNGLLYEKSKDYLAINIKGKI-KKIPFNEVLKISLC 151 (155)
T ss_pred CCCEEEEEEecCcCCeEEEEEEEEEEeCCEEEEEECCEE-EEEEHHHeeeEEeC
Confidence 22233333 46788999988875 79999999999874
No 18
>PRK14630 hypothetical protein; Provisional
Probab=72.21 E-value=33 Score=32.04 Aligned_cols=89 Identities=15% Similarity=0.247 Sum_probs=61.9
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCc---eeeeeeeeeee--------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPE---EKQLSVSGRNW-------------- 109 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~---~~e~s~~GwNw-------------- 109 (522)
++-.++|.+-.++.-|||++-.. +|..-+|-+.+++.+.....-.+. .=|+|..|.+.
T Consensus 24 eLvdve~~~~~~~~~lrV~Id~~-----~gV~idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~ 98 (143)
T PRK14630 24 EIIEINTFRNRNEGKIQIVLYKK-----DSFGVDTLCDLHKMILLILEAVLKYNFSLEISTPGINRKIKSDREFKIFEGK 98 (143)
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCCHHHHHHHHHHHHHHhcccCCCCeEEEEeCCCCCCcCCCHHHHHHhCCC
Confidence 46678898888888899998532 568899999999998666543222 23555555432
Q ss_pred ------------eee-EecCceEEEEeCCEeEEEEeccccccccc
Q 009912 110 ------------GEV-DLNGNMLTFMVGQKQAFEVSLADVSQTQL 141 (522)
Q Consensus 110 ------------G~~-~~~~~~l~f~v~~k~~feip~~~is~~~~ 141 (522)
|.+ .++++.+.+.+++++ ++||+++|+.+++
T Consensus 99 ~v~V~l~~~~~~G~L~~~~d~~i~l~~~~~~-~~i~~~~I~ka~l 142 (143)
T PRK14630 99 KIKLMLDNDFEEGFILEAKADSFIFKTDSKE-VNVLYSDVKKAKL 142 (143)
T ss_pred EEEEEEcCcceEEEEEEEeCCEEEEEECCEE-EEEEhHhcceEEE
Confidence 332 245667888877764 8899999988765
No 19
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.07 E-value=4.4 Score=47.79 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=6.2
Q ss_pred echhhhhhHHHHHhc
Q 009912 419 IQRNEYHNLFDFISG 433 (522)
Q Consensus 419 I~reE~~~L~~fl~~ 433 (522)
|.++..+-..+|=++
T Consensus 1377 Ie~~~~~d~dq~sT~ 1391 (1516)
T KOG1832|consen 1377 IEMEDQEDMDQFSTS 1391 (1516)
T ss_pred EeccChhhhhhhhhh
Confidence 444444444444433
No 20
>PRK14637 hypothetical protein; Provisional
Probab=68.35 E-value=58 Score=30.73 Aligned_cols=89 Identities=11% Similarity=0.219 Sum_probs=62.4
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCc----eeeeeeee----------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPE----EKQLSVSG---------------- 106 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~----~~e~s~~G---------------- 106 (522)
++-.++|.+-++++.|||++-.. +|..-+|-+.+++.+....+..+. .=|+|..|
T Consensus 24 eLvdve~~~~~~~~~lrV~ID~~-----~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRpL~~~~~f~r~~G 98 (151)
T PRK14637 24 KLVDLSRRVQQAQGRVRAVIYSA-----GGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERVIKNAAEFSIFVG 98 (151)
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCHHHHHHhCC
Confidence 56788999999999999998522 478889999999988776643221 22222222
Q ss_pred ----------eee--eee-EecCceEEEEeCCEeEEEEeccccccccc
Q 009912 107 ----------RNW--GEV-DLNGNMLTFMVGQKQAFEVSLADVSQTQL 141 (522)
Q Consensus 107 ----------wNw--G~~-~~~~~~l~f~v~~k~~feip~~~is~~~~ 141 (522)
-+| |.+ .++++.+.+.+++++ .+||+++|..+++
T Consensus 99 ~~V~V~l~~~~~~~~G~L~~~~d~~v~l~~~~~~-~~i~~~~I~ka~L 145 (151)
T PRK14637 99 ETVKVWFECTGQWQVGTIAEADETCLVLTSDGVP-VTIPYVQITKAQL 145 (151)
T ss_pred CEEEEEECCCCcEEEEEEEEEeCCEEEEEECCEE-EEEEHHHeeeEEE
Confidence 133 554 357778888887765 8899999998876
No 21
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=64.80 E-value=4.7 Score=47.79 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=6.7
Q ss_pred echhhhhhHHHH
Q 009912 419 IQRNEYHNLFDF 430 (522)
Q Consensus 419 I~reE~~~L~~f 430 (522)
|-++|.+.|..-
T Consensus 276 ~a~ee~erLekl 287 (840)
T PF04147_consen 276 IAKEEKERLEKL 287 (840)
T ss_pred HHHHHHHHHHHH
Confidence 445666665553
No 22
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=64.71 E-value=24 Score=29.71 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=42.7
Q ss_pred EeeccCceeEEEeccCc--eeeccc----CC-EEEEcCceEEEEEEEecCCCcceeeEEEEEEEecC
Q 009912 352 KSSLKAEDGVLYPLEKS--FFFLPK----PP-TLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE 411 (522)
Q Consensus 352 kCs~Ka~~G~LypLe~~--~lfl~K----Pp-~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g 411 (522)
.|.||-.+|.||..++. +.|.++ |. +-|++++|...--+-.+. ----|.|..+++
T Consensus 6 ~~~yKK~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s-----~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 6 AASYKKKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGS-----PKVMLKIVLKDD 67 (79)
T ss_dssp EEEETTEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTS-----STEEEEEEETTS
T ss_pred eEEEEcCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCC-----cceEEEEEEecC
Confidence 48999999999999999 999865 54 789999999977666542 335677888876
No 23
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=63.03 E-value=12 Score=29.86 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=29.6
Q ss_pred eEeeccC----ceeEEEeccCceeecc----cC--CEEEEcCceEEEE
Q 009912 351 VKSSLKA----EDGVLYPLEKSFFFLP----KP--PTLILHEEIDYVE 388 (522)
Q Consensus 351 VkCs~Ka----~~G~LypLe~~~lfl~----KP--p~~I~~~eI~~V~ 388 (522)
..|++.. ..|.||.+++-+.|-. .+ .+.||+.+|.+|+
T Consensus 19 ~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~ 66 (69)
T PF02893_consen 19 YSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIE 66 (69)
T ss_dssp EEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEE
T ss_pred EEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEE
Confidence 3466655 6999999999999965 23 3689999999986
No 24
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=58.33 E-value=12 Score=38.51 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=4.8
Q ss_pred eeEEEEEEEe
Q 009912 400 HYFDLLIRLK 409 (522)
Q Consensus 400 rTFDl~v~~K 409 (522)
-|=||.+.++
T Consensus 221 eTkdLSmStR 230 (314)
T PF06524_consen 221 ETKDLSMSTR 230 (314)
T ss_pred ccccceeeee
Confidence 4445555543
No 25
>PRK14634 hypothetical protein; Provisional
Probab=56.84 E-value=1e+02 Score=29.18 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=63.1
Q ss_pred CcceeEEEEecCcceEEEEEeC-CcEEEEcCCChhhHHHHHHHHHhhcCCC-----Cceeeeeeeee-------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKD-GLYYKFTGFRDQDVATLTNFFQSNFGIS-----PEEKQLSVSGR------------- 107 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~-~~~~~fdGF~~~d~~~l~~~~~~~~~~~-----l~~~e~s~~Gw------------- 107 (522)
++-.++|.+-++++.|||++-. ++ +|..-+|-+.++..+...++.. -+.=|+|..|-
T Consensus 23 elvdve~~~~~~~~~lrV~ID~~~g----~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~~f~r~ 98 (155)
T PRK14634 23 ELCGIQVLTHLQPMTLQVQIRRSSG----SDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIGDQLSSDRDFQTF 98 (155)
T ss_pred EEEEEEEEeCCCCcEEEEEEECCCC----CcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCCHHHHHHh
Confidence 4677889999999999999842 21 1378899999999998888743 12333443331
Q ss_pred -----------------e-eeee-EecCceEEEEeCCEeEEEEecccccccccc
Q 009912 108 -----------------N-WGEV-DLNGNMLTFMVGQKQAFEVSLADVSQTQLQ 142 (522)
Q Consensus 108 -----------------N-wG~~-~~~~~~l~f~v~~k~~feip~~~is~~~~~ 142 (522)
+ -|.+ .+++..+.+.++++. ++||+++|+.+++.
T Consensus 99 ~G~~V~V~l~~~~~~~k~~~G~L~~~~~~~v~l~~~~~~-~~i~~~~I~ka~l~ 151 (155)
T PRK14634 99 RGFPVEVSHRDDDGSEQRLEGLLLERNEDHLQINIRGRI-KRIPRDSVISVRLT 151 (155)
T ss_pred CCCeEEEEEecCCCCeEEEEEEEEEEeCCEEEEEECCEE-EEEEHHHeeeEEeC
Confidence 1 1322 245677888887765 89999999998773
No 26
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.87 E-value=10 Score=36.86 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=12.8
Q ss_pred CCccCcCCcCCCCCCCCCCCCCCC
Q 009912 478 SDEEDSDFVADKDDGGSPTDDSGE 501 (522)
Q Consensus 478 deeeDeDF~~~~sd~~ee~Ds~~~ 501 (522)
|+++|+||..++++.+.++|+.++
T Consensus 190 de~~DDd~d~d~D~eD~~gD~e~~ 213 (227)
T KOG3241|consen 190 DEAHDDDSDPDSDEEDNVGDDEHD 213 (227)
T ss_pred ccccccccCCccccccccCccccc
Confidence 444455665333444556666654
No 27
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=55.86 E-value=17 Score=39.81 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=7.4
Q ss_pred hhhhHHHHHh-cCCcEEEe
Q 009912 423 EYHNLFDFIS-GKGLKIMN 440 (522)
Q Consensus 423 E~~~L~~fl~-~k~i~i~n 440 (522)
.+..+..+|. -.|+....
T Consensus 133 ~~~~~~~~~~~~lg~~~~~ 151 (432)
T PF09073_consen 133 VVPGIEEGLRQVLGIPKPA 151 (432)
T ss_pred HHHHHHHHHHHHhCCCccc
Confidence 4444444333 23444433
No 28
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=55.86 E-value=8.6 Score=43.11 Aligned_cols=15 Identities=13% Similarity=0.534 Sum_probs=6.6
Q ss_pred hhhhhHHHHHhcCCc
Q 009912 422 NEYHNLFDFISGKGL 436 (522)
Q Consensus 422 eE~~~L~~fl~~k~i 436 (522)
.+.+.-..+++.+.|
T Consensus 169 ~dA~~Al~~~N~~~i 183 (678)
T KOG0127|consen 169 KDAEKALEFFNGNKI 183 (678)
T ss_pred HHHHHHHHhccCcee
Confidence 334444445554433
No 29
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=55.80 E-value=18 Score=28.04 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=29.3
Q ss_pred eEeecc---CceeEEEeccCceeecc-c---C--CEEEEcCceEEEE
Q 009912 351 VKSSLK---AEDGVLYPLEKSFFFLP-K---P--PTLILHEEIDYVE 388 (522)
Q Consensus 351 VkCs~K---a~~G~LypLe~~~lfl~-K---P--p~~I~~~eI~~V~ 388 (522)
..|.+. ...|.||.+++.+.|-. . + .+.||+.+|.+|+
T Consensus 12 ~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~ 58 (61)
T smart00568 12 YSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIE 58 (61)
T ss_pred EEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEE
Confidence 346664 46999999999999964 2 2 4679999999886
No 30
>PRK14640 hypothetical protein; Provisional
Probab=54.32 E-value=1.3e+02 Score=28.23 Aligned_cols=89 Identities=13% Similarity=0.300 Sum_probs=63.4
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCC-----Cceeeeeeeeee------------e
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGIS-----PEEKQLSVSGRN------------W 109 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~-----l~~~e~s~~GwN------------w 109 (522)
++-.+.|.+.+++..|||++-.. +|..-+|-+.++..+...++.. -+.=|+|..|-. =
T Consensus 22 el~dve~~~~~~~~~lrV~ID~~-----~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~f~r~~ 96 (152)
T PRK14640 22 ELWGIEFIRAGKHSTLRVYIDGE-----NGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQFEKYV 96 (152)
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCCHHHHHHhC
Confidence 46678899999999999998422 4678899999999998888753 223344444421 1
Q ss_pred -------------eee-------EecCceEEEEeCCEeEEEEeccccccccc
Q 009912 110 -------------GEV-------DLNGNMLTFMVGQKQAFEVSLADVSQTQL 141 (522)
Q Consensus 110 -------------G~~-------~~~~~~l~f~v~~k~~feip~~~is~~~~ 141 (522)
|.- .+++..+.+.+++++ ++||+++|+.+++
T Consensus 97 G~~v~V~l~~~~~~~k~~~G~L~~v~~~~v~l~~~~~~-~~i~~~~I~ka~l 147 (152)
T PRK14640 97 GQEAAVTLRMATNNRRKFKGVIKAVQGDMITLTVDGKD-EVLAFTNIQKANI 147 (152)
T ss_pred CCeEEEEEecccCCceEEEEEEEEEeCCEEEEEECCeE-EEEEhHHeeeEEE
Confidence 112 235567888888876 7899999998877
No 31
>PRK14638 hypothetical protein; Provisional
Probab=53.76 E-value=91 Score=29.35 Aligned_cols=89 Identities=16% Similarity=0.289 Sum_probs=60.5
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcC-CChhhHHHHHHHHHhhcCCC-----Cceeeeeeeeee------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTG-FRDQDVATLTNFFQSNFGIS-----PEEKQLSVSGRN------------ 108 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdG-F~~~d~~~l~~~~~~~~~~~-----l~~~e~s~~GwN------------ 108 (522)
++-.+.|.+-+++..|||++-.. +| ..-+|-+.++..+...++.. -+.=|+|..|-.
T Consensus 24 elvdve~~~~~~~~~lrV~ID~~-----~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~~f~r~ 98 (150)
T PRK14638 24 EIFDVQYRRESRGWVLRIIIDNP-----VGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPLRGPKDYVRF 98 (150)
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCCCCCCCHHHHHHh
Confidence 46678999999999999998532 35 78899999999999888743 122344444421
Q ss_pred --------------e-eee-EecCceEEEEeCCEeEEEEeccccccccc
Q 009912 109 --------------W-GEV-DLNGNMLTFMVGQKQAFEVSLADVSQTQL 141 (522)
Q Consensus 109 --------------w-G~~-~~~~~~l~f~v~~k~~feip~~~is~~~~ 141 (522)
| |.+ .+++..+.+..+++ .++||+++|..+++
T Consensus 99 ~G~~v~V~~~~~k~~~G~L~~~~~~~i~l~~~~~-~~~i~~~~I~~a~l 146 (150)
T PRK14638 99 TGKLAKIVTKDGKTFIGRIESFVDGTITISDEKE-KYEINIDDVKRANL 146 (150)
T ss_pred CCCEEEEEECCCcEEEEEEEEEeCCEEEEEECCc-EEEEEhHHcceEEE
Confidence 1 211 23455666765543 48889999988776
No 32
>PF14317 YcxB: YcxB-like protein
Probab=52.44 E-value=29 Score=26.11 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=42.2
Q ss_pred EecCceeEEeCCCCceEEEecCCcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHH
Q 009912 25 IYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQ 90 (522)
Q Consensus 25 ~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~ 90 (522)
++++||.+++. .....+++++|.. |....+.+-|-+.-...-++-=..|..++++.+.++++
T Consensus 1 f~~~gi~~~~~--~~~~~~~w~~i~~--v~e~~~~~~l~~~~~~~~~iPk~~f~~~e~~~f~~~lk 62 (62)
T PF14317_consen 1 FDEDGIIIESG--NGSSRIPWSDIKK--VVETKDYFYLYLGKNQAFIIPKRAFSEEEKEEFREFLK 62 (62)
T ss_pred CCCCEEEEEEC--CeEEEEEchheEE--EEEeCCEEEEEECCCeEEEEEHHHCCHhHHHHHHHHhC
Confidence 35788888874 4577889999876 55555555554332222455556899999999998875
No 33
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=51.26 E-value=13 Score=44.08 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=4.7
Q ss_pred hHHHHHhcC
Q 009912 426 NLFDFISGK 434 (522)
Q Consensus 426 ~L~~fl~~k 434 (522)
+|.+++.+.
T Consensus 1361 ~~~Dlct~~ 1369 (1516)
T KOG1832|consen 1361 CLLDLCTEP 1369 (1516)
T ss_pred chhhhhcCC
Confidence 355555554
No 34
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=50.42 E-value=13 Score=42.60 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=5.1
Q ss_pred cCCcEEEeCC
Q 009912 433 GKGLKIMNLG 442 (522)
Q Consensus 433 ~k~i~i~n~~ 442 (522)
.-+|.+-..+
T Consensus 96 ~~~v~v~ddg 105 (622)
T PF02724_consen 96 NDQVIVFDDG 105 (622)
T ss_pred CCcEEEEECC
Confidence 4455555543
No 35
>PRK14647 hypothetical protein; Provisional
Probab=50.22 E-value=1.1e+02 Score=28.91 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=60.9
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCC-----Cceeeeeeeee--------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGIS-----PEEKQLSVSGR-------------- 107 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~-----l~~~e~s~~Gw-------------- 107 (522)
++-.+.|.+-++...|||++-. =.|..-+|-+.++..+...++.. -+.=|+|..|-
T Consensus 24 ~L~dv~~~~~~~~~~lrV~ID~-----~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~RpL~~~~~f~r~~ 98 (159)
T PRK14647 24 ELVELEYKREGREMVLRLFIDK-----EGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLKKEADYERYA 98 (159)
T ss_pred EEEEEEEEecCCCeEEEEEEeC-----CCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCCcCCCHHHHHHhC
Confidence 4567888888888899999842 25788999999999999888753 12234444441
Q ss_pred --------------eee--eeE-------ecCceEEEEeCCEeEEEEeccccccccc
Q 009912 108 --------------NWG--EVD-------LNGNMLTFMVGQKQAFEVSLADVSQTQL 141 (522)
Q Consensus 108 --------------NwG--~~~-------~~~~~l~f~v~~k~~feip~~~is~~~~ 141 (522)
+|| .-. ++++.+.+.+.+...++||+++|+.+++
T Consensus 99 G~~v~V~l~~~~~~~~~~~~~~~~G~L~~~~~~~v~l~~~~~~~~~i~~~~I~ka~l 155 (159)
T PRK14647 99 GRLVKVRTFELLADEAGNKRKTFLGELEGLADGVVTIALKEGQQARIPLDKIAKANL 155 (159)
T ss_pred CcEEEEEEeccccccccCCceEEEEEEEeecCCEEEEEEcCCcEEEEEHHHCCEEEE
Confidence 233 222 3455667766534457888888888765
No 36
>PRK14631 hypothetical protein; Provisional
Probab=50.20 E-value=97 Score=29.96 Aligned_cols=95 Identities=13% Similarity=0.250 Sum_probs=64.5
Q ss_pred CcceeEEEEecCcceEEEEEeC-------------CcEEEEcCCChhhHHHHHHHHHhhcCCC-----Cceeeeeeeeee
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKD-------------GLYYKFTGFRDQDVATLTNFFQSNFGIS-----PEEKQLSVSGRN 108 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~-------------~~~~~fdGF~~~d~~~l~~~~~~~~~~~-----l~~~e~s~~GwN 108 (522)
++-.+.|.+-++...|||++-. |..-.-.|..-+|-+.+++.+...++.. -+.=|+|..|+.
T Consensus 24 eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 103 (174)
T PRK14631 24 DLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHDPISGEYALEVSSPGWD 103 (174)
T ss_pred EEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 4567888888888899999852 1111245889999999999999998853 223455555542
Q ss_pred e-------------------------------eee-Eec--CceEEEEeCCEeEEEEeccccccccc
Q 009912 109 W-------------------------------GEV-DLN--GNMLTFMVGQKQAFEVSLADVSQTQL 141 (522)
Q Consensus 109 w-------------------------------G~~-~~~--~~~l~f~v~~k~~feip~~~is~~~~ 141 (522)
- |.+ .++ +..+.+.+.++..++||+++|..+++
T Consensus 104 RpL~~~~df~r~~G~~V~V~l~~~~~~~k~~~G~L~~v~~~~~~v~l~~~~~~~~~i~~~~I~ka~L 170 (174)
T PRK14631 104 RPFFQLEQLQGYIGQQVALRLIAAVENRRKFQAKLLAVDLENEEIQVEVEGKHVLDIDSNNIDKANL 170 (174)
T ss_pred CcCCCHHHHHHhCCCeEEEEEecccCCceEEEEEEEEeecCCCEEEEEEcCCcEEEEEhHHcceEEE
Confidence 1 222 223 66777777655567888888888776
No 37
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=50.06 E-value=5.4 Score=37.57 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=0.0
Q ss_pred ccccCCCCC
Q 009912 513 KEQRITKSS 521 (522)
Q Consensus 513 ~~~~~~k~~ 521 (522)
++.|+||+|
T Consensus 141 e~~p~K~~~ 149 (149)
T PF03066_consen 141 EESPVKKSK 149 (149)
T ss_dssp ---------
T ss_pred ccCCCccCC
Confidence 345777765
No 38
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=49.28 E-value=55 Score=28.23 Aligned_cols=59 Identities=25% Similarity=0.224 Sum_probs=45.4
Q ss_pred CCCeeEEEecCceeEEeC-----------------CCCceEEEecCCcceeEEEEec-CcceEEEEEeCCcEEEEcCC
Q 009912 18 TNPGQLKIYSGKISWKKL-----------------GGGKAVEVDKVDIAGVTWMKVP-RTNQLGVRTKDGLYYKFTGF 77 (522)
Q Consensus 18 ~~~G~lk~~~~gl~wK~~-----------------~~g~~~~i~~~di~~~~w~r~~-~~~~Lri~~k~~~~~~fdGF 77 (522)
..+|.|.|+.+.+-|-.. ...+...++-++|..+.|.|.- |.-.|-|++.+|.-+- --|
T Consensus 16 ~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF~~dg~s~f-~~F 92 (106)
T PF14844_consen 16 SIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIFFSDGRSYF-FNF 92 (106)
T ss_dssp EEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEEETTS-EEE-EE-
T ss_pred eEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEEEcCCcEEE-EEc
Confidence 478999999999999754 2347899999999999999986 9999999999997554 445
No 39
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=45.39 E-value=97 Score=26.67 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=50.0
Q ss_pred ccCceeEEEeccCceeeccc-------------------CC-EEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCceE
Q 009912 355 LKAEDGVLYPLEKSFFFLPK-------------------PP-TLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEH 414 (522)
Q Consensus 355 ~Ka~~G~LypLe~~~lfl~K-------------------Pp-~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~~ 414 (522)
....+|.|...++.+.|... |. ..+++++|..|+.-|-- .|.=-|+|.+.+|..+
T Consensus 14 ~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyl-----lr~~AlEiF~~dg~s~ 88 (106)
T PF14844_consen 14 LDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYL-----LRDTALEIFFSDGRSY 88 (106)
T ss_dssp TEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEET-----TEEEEEEEEETTS-EE
T ss_pred eeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhc-----CcceEEEEEEcCCcEE
Confidence 34468999999988888532 33 57999999999999874 5888899999999877
Q ss_pred EEeeechhhhhhHH
Q 009912 415 LFRNIQRNEYHNLF 428 (522)
Q Consensus 415 ~Fs~I~reE~~~L~ 428 (522)
-|+==++++.+.+.
T Consensus 89 f~~F~~~~~R~~v~ 102 (106)
T PF14844_consen 89 FFNFESKKERDEVY 102 (106)
T ss_dssp EEE-SSHHHHHHHH
T ss_pred EEEcCCHHHHHHHH
Confidence 76655666665544
No 40
>PF13619 KTSC: KTSC domain
Probab=45.08 E-value=37 Score=26.75 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=32.4
Q ss_pred ecCCcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHH
Q 009912 44 DKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTN 87 (522)
Q Consensus 44 ~~~di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~ 87 (522)
+++-|.++.+-. ..-.|.|..++|.+++|.|.+...++.|.+
T Consensus 2 ~Ss~I~~v~Yd~--~~~~L~V~F~~G~~Y~Y~~Vp~~~~~~l~~ 43 (60)
T PF13619_consen 2 SSSNIRSVGYDP--ETRTLEVEFKSGSVYRYFGVPPEVYEALLN 43 (60)
T ss_pred ccCcccEEeECC--CCCEEEEEEcCCCEEEECCCCHHHHHHHHc
Confidence 455666666643 344678888999999999999999998864
No 41
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=44.48 E-value=40 Score=26.72 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=27.6
Q ss_pred eeeeeeeeEecCceEEEEe--CCEe--EEEEecccccccc
Q 009912 105 SGRNWGEVDLNGNMLTFMV--GQKQ--AFEVSLADVSQTQ 140 (522)
Q Consensus 105 ~GwNwG~~~~~~~~l~f~v--~~k~--~feip~~~is~~~ 140 (522)
++..+|++-+..+-|.|.. .+.+ .+.||+.+|..+.
T Consensus 27 ~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~ 66 (69)
T PF02893_consen 27 KIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIE 66 (69)
T ss_dssp ---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEE
T ss_pred ccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEE
Confidence 6678999999999999987 3333 6999999998764
No 42
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=44.15 E-value=20 Score=39.30 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=8.0
Q ss_pred HHHHHhcCCcEEEeCCC
Q 009912 427 LFDFISGKGLKIMNLGD 443 (522)
Q Consensus 427 L~~fl~~k~i~i~n~~~ 443 (522)
|.+=|+ |.+.|+..++
T Consensus 28 i~Dtlk-KE~~IRkLge 43 (458)
T PF10446_consen 28 INDTLK-KENAIRKLGE 43 (458)
T ss_pred HHHHHH-HHHHHhhhhH
Confidence 444443 3356666654
No 43
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=43.44 E-value=16 Score=41.79 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=17.2
Q ss_pred eeecc-cCCEEEEcCceEEEEEEEec
Q 009912 369 FFFLP-KPPTLILHEEIDYVEFERHA 393 (522)
Q Consensus 369 ~lfl~-KPp~~I~~~eI~~V~f~Rv~ 393 (522)
+|.+| |.|+..-=..|..|.|-|-.
T Consensus 713 iiH~HLk~PIl~GkrKvqdVQFYREa 738 (1001)
T COG5406 713 IIHFHLKSPILTGKRKVQDVQFYREA 738 (1001)
T ss_pred EEEEeecCceecCCceeeeeeeeecc
Confidence 34444 77777777778888887753
No 44
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=43.22 E-value=14 Score=42.97 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=12.2
Q ss_pred EeEEEEec--cccccccccCCCeEEEEE
Q 009912 126 KQAFEVSL--ADVSQTQLQGKNDVILEF 151 (522)
Q Consensus 126 k~~feip~--~~is~~~~~~KnEv~lef 151 (522)
..+|-|.+ +++.|-+ +||.-+|-+
T Consensus 335 gmvFni~lGf~nl~n~~--~~~~yaL~l 360 (960)
T KOG1189|consen 335 GMVFNISLGFSNLTNPE--SKNSYALLL 360 (960)
T ss_pred CcEEEEeeccccccCcc--cccchhhhc
Confidence 34555543 4454443 456666655
No 45
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=42.55 E-value=25 Score=33.31 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=21.6
Q ss_pred ceEEEcCeeEEcC-Cc-c---eEEEEeeccEEE
Q 009912 208 AVVTFEGIAILTP-RG-R---YSVELHLSFLRL 235 (522)
Q Consensus 208 ~i~~f~dI~~ltP-RG-R---ydie~~~~~lrl 235 (522)
....|.||.+..+ -| | ..||+|.||||+
T Consensus 120 ~~~~L~dl~iRP~~~g~kr~~G~LEaH~NGfRy 152 (152)
T PF08644_consen 120 RPPRLKDLYIRPAIGGRKRVPGTLEAHTNGFRY 152 (152)
T ss_pred CCCccCCceECCCCccccccCceEEEecCcccC
Confidence 3446789988866 44 2 899999999995
No 46
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=41.52 E-value=45 Score=26.53 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=41.7
Q ss_pred cCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCce--EEEeeechhhhhhHHHHH
Q 009912 374 KPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQE--HLFRNIQRNEYHNLFDFI 431 (522)
Q Consensus 374 KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~--~~Fs~I~reE~~~L~~fl 431 (522)
|-..+|+++.|.+|+..+-=.. .-.+.-++.|...++.. ..+..++.++.+.|.+||
T Consensus 22 ~~~~~i~~~~Iq~v~~~q~~~~-r~~g~~~i~i~~~~~~~~~~~i~~~~~~~a~~i~~~i 80 (80)
T PF03703_consen 22 KRTTIIPLDRIQSVSIKQNPLQ-RLFGLGTIKIDTAGGSGEKIEIPFLSIEDAEEIYDWI 80 (80)
T ss_pred EEEEEEEhhHeEEEEEEcCHHH-HhCccEEEEEEECCCCCceeEEecCCHHHHHHHHhhC
Confidence 3447899999999999763211 01255677888877643 788889999999998875
No 47
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=39.46 E-value=40 Score=34.79 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=7.6
Q ss_pred EEcCceEEEEEEEe
Q 009912 379 ILHEEIDYVEFERH 392 (522)
Q Consensus 379 I~~~eI~~V~f~Rv 392 (522)
-|+.+-..|+-+|.
T Consensus 121 Cpl~da~C~EC~R~ 134 (314)
T PF06524_consen 121 CPLQDAVCIECERG 134 (314)
T ss_pred CcCCCcEeeeeecc
Confidence 45555555566653
No 48
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=39.41 E-value=1.5e+02 Score=27.23 Aligned_cols=84 Identities=10% Similarity=0.251 Sum_probs=43.5
Q ss_pred eeeEecCceEEEEeC--CEeEEEEeccccccccccC-----CCe--EEEEEec------------CCCCCCCCCCceeEE
Q 009912 110 GEVDLNGNMLTFMVG--QKQAFEVSLADVSQTQLQG-----KND--VILEFHV------------DDTTGANEKDSLMEI 168 (522)
Q Consensus 110 G~~~~~~~~l~f~v~--~k~~feip~~~is~~~~~~-----KnE--v~lef~~------------~~~~~~~~~d~L~Em 168 (522)
|++-+....|.+.-+ ....|+|||..|+==.++. ..+ |-+++.. ............+||
T Consensus 1 g~L~Vt~~~l~w~~~~~~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld~~~~~~~~~~~~~~~~~~~~~~~~~~El 80 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDSSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLDSDLEEDEEGDDEDDEEDDEEDDESSVEL 80 (135)
T ss_dssp EEEEEETTEEEEEET--TTEEEEESS---SEEE--SS-S-S--S--EEEEEE----SS-SSS---S--S-S--S-SEEEE
T ss_pred CEEEEecCEEEEECCCcCCcceeecCCeEEEEEeecCCCCCCCCceEEEEEecccCccccccccccccccccccccceEE
Confidence 567777777776553 6899999999998644422 122 5555421 111123346889999
Q ss_pred EEEeCCCCCccCCCCCCChHHHHHHHHHhhccc
Q 009912 169 SFHIPNSNTQFVGDENHPPAQVFRDKIMSMADV 201 (522)
Q Consensus 169 Rf~iP~~~~~~~~~~~~~~a~~f~~~i~~ka~i 201 (522)
||.-+... .+.++.++++|-.-+.+
T Consensus 81 ~l~P~~~~--------~~~l~~if~Als~C~~L 105 (135)
T PF03517_consen 81 RLVPSDPS--------SDMLDEIFEALSECQEL 105 (135)
T ss_dssp EEEES-HH--------H--HHHHHHHHHHHHH-
T ss_pred EEecCccc--------chHHHHHHHHHHHHHHh
Confidence 98654310 12377788777666554
No 49
>PF12462 Helicase_IV_N: DNA helicase IV / RNA helicase N terminal; InterPro: IPR022161 This domain family is found in bacteria and eukaryotes, and is approximately 170 amino acids in length. The family is found in association with PF00580 from PFAM. Nucleolin unwinds nucleic acid strands in the 5' to 3' direction with respect to the bound strand. It can unwind RNA-RNA duplexes, as well as DNA-DNA and DNA-RNA duplexes. Nucleolin is modulated by phosphorylation of serine and threonine residues in its N-terminal region.
Probab=37.75 E-value=1.2e+02 Score=28.81 Aligned_cols=71 Identities=6% Similarity=0.100 Sum_probs=58.5
Q ss_pred eeEEEecCceeEEeCCCCceEEEecCCcc-eeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhc
Q 009912 21 GQLKIYSGKISWKKLGGGKAVEVDKVDIA-GVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNF 93 (522)
Q Consensus 21 G~lk~~~~gl~wK~~~~g~~~~i~~~di~-~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~ 93 (522)
=+++|.+.|+.--+. |....|+-+++. .+.-.|+-=.-+|.+.+.++.++++.|.+-++-..+..++.+.|
T Consensus 18 ~~v~L~~~~l~ls~~--~~~~~Ipf~~~~g~i~~krGl~Wg~L~f~~~~~~~v~l~Gl~w~e~~~Fa~~l~~~w 89 (166)
T PF12462_consen 18 NRVELDNAGLELSSD--GHEYRIPFNQLSGSIQVKRGLFWGELEFFLPDQKVVRLHGLPWSEAQRFAHHLNQAW 89 (166)
T ss_pred ceEEEcCCEEEEEeC--CeEEEecHHHhccceeeecceeEEEEEEEcCCCcEEEEcCCccHHHHHHHHHHHHHH
Confidence 356666677766543 689999999999 88887777777899999999999999999999888888877766
No 50
>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM.
Probab=37.48 E-value=36 Score=36.97 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=38.2
Q ss_pred CceeeeeeeeeeeeeeEecCceEEEEeCCEeEEEEeccccccccc
Q 009912 97 PEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQL 141 (522)
Q Consensus 97 l~~~e~s~~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~ 141 (522)
.-...+-..+||-.++.+.|+.+....|++++++-|+..=+.-+.
T Consensus 82 ~~~~~l~~~~wN~v~l~~~g~~v~l~LN~~~i~~~~~~~~~~~~f 126 (399)
T PF07622_consen 82 SPTLPLKVNAWNRVRLQRRGDKVQLHLNGQLIYERPLEPGSSRQF 126 (399)
T ss_pred CCCCCCCccccceEEEEEeCCEEEEEeCCceeEecccCCCCCCcc
Confidence 344567789999999999999999999999999999988665443
No 51
>PRK14636 hypothetical protein; Provisional
Probab=36.66 E-value=2.2e+02 Score=27.54 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=59.1
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCC-----Cceeeeeeeeee-------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGIS-----PEEKQLSVSGRN------------- 108 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~-----l~~~e~s~~GwN------------- 108 (522)
++-.+.|.+-++...|||++.... =+|..-+|-+.++..+...++.. -+.=|+|..|..
T Consensus 21 eLvdve~~~~~~~~~lrV~ID~~~---~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~df~r~~ 97 (176)
T PRK14636 21 DLVRVAMFGGKSDPTLQIMAERPD---TRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGIDRPLTRPKDFADWA 97 (176)
T ss_pred EEEEEEEEcCCCCeEEEEEEECCC---CCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCCCCCCHHHHHHhC
Confidence 456788888888999999984210 03588899999999999988743 123345544432
Q ss_pred ------------eeee-------EecCceEEEEeCCEeEEEEeccccccccc
Q 009912 109 ------------WGEV-------DLNGNMLTFMVGQKQAFEVSLADVSQTQL 141 (522)
Q Consensus 109 ------------wG~~-------~~~~~~l~f~v~~k~~feip~~~is~~~~ 141 (522)
=|.- .+++..+.+.+.++..++||+++|+.+++
T Consensus 98 G~~V~V~l~~~~~g~k~~~G~L~~v~~~~v~l~~~~~~~~~i~~~~I~kA~l 149 (176)
T PRK14636 98 GHEARIALSEPLDGRKQFRGELKGIDGDTVTIADNKAGEVILPFAAIESAKL 149 (176)
T ss_pred CCeEEEEEecccCCeEEEEEEEEEEeCCEEEEEEcCCcEEEEEhHHcceEEE
Confidence 1222 23445566666433346778888877766
No 52
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=33.97 E-value=59 Score=26.33 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=44.6
Q ss_pred eEEEecCceeEEeCCCCceEEEecCCcceeEEEEecCcceEEEEEeCCcEEEEcCCChhh
Q 009912 22 QLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQD 81 (522)
Q Consensus 22 ~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d 81 (522)
++.++++||.-++- -.+..+++++|..+.-....+- +.+.+.+|..+.|.|....+
T Consensus 3 rv~v~~~Gl~vr~~--~rt~~vpW~~I~~v~~~~~~~~--v~~~~~dg~~~~l~~~~~~~ 58 (73)
T PF10756_consen 3 RVEVDPDGLRVRNL--FRTRRVPWSEIAGVRFRRGRRW--VRLDLRDGRLVPLPAVQLGD 58 (73)
T ss_pred eEEEcCCcEEEEcC--ceeEEEChHHeEEEEccCCceE--EEEECCCCCEEEEeeEEcCC
Confidence 57889999999976 3789999999999884333222 88888999999998887764
No 53
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.89 E-value=68 Score=29.09 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=53.1
Q ss_pred CCCeeEEEecCceeEEeCC-CCceEEEecCCcceeEEEEecC--cceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcC
Q 009912 18 TNPGQLKIYSGKISWKKLG-GGKAVEVDKVDIAGVTWMKVPR--TNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFG 94 (522)
Q Consensus 18 ~~~G~lk~~~~gl~wK~~~-~g~~~~i~~~di~~~~w~r~~~--~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~ 94 (522)
..-|++-|.+.|+-|=++. -++-++||+++|..+.-+-..+ +-+..|.+++++-++|. ..|--++-+.+++|.|
T Consensus 22 ~~~GkiliGDkgfEFYn~~nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~~gk~~Fa---Skdsg~iLk~ir~yvg 98 (122)
T COG4687 22 AEYGKILIGDKGFEFYNDRNVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDTQGKVRFA---SKDSGKILKKIREYVG 98 (122)
T ss_pred hhcCeEEEcccceeecCCCChhheeEecHHHhheeheeehhhhhcceEEEEEcCCceEEEE---eCCchhHHHHHHHHhC
Confidence 3789999999999997754 4688999999998776555443 44566777777788875 3444555556666644
No 54
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=33.64 E-value=3.3e+02 Score=24.94 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=54.7
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCC--C---ceeeeeeeeee-------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGIS--P---EEKQLSVSGRN------------- 108 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~--l---~~~e~s~~GwN------------- 108 (522)
++-.+.|.+-+++..|+|.+-. =.|..-+|.++++..+....+.. + ..=|+|..|-.
T Consensus 12 ~l~~v~~~~~~~~~~l~V~id~-----~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~~~~~~~~i 86 (141)
T PF02576_consen 12 ELVDVEVVKEGGNRILRVFIDK-----DGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKSPRDFERFI 86 (141)
T ss_dssp EEEEEEEEEETTEEEEEEEEE------SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SSHHHHHHH-
T ss_pred EEEEEEEEECCCCEEEEEEEEe-----CCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCCHHHHHHhc
Confidence 4667899999999999999742 24677789999999999888762 1 13344544421
Q ss_pred ------------------eee-eEecCceEEEEeCCE---eEEEEeccccccccc
Q 009912 109 ------------------WGE-VDLNGNMLTFMVGQK---QAFEVSLADVSQTQL 141 (522)
Q Consensus 109 ------------------wG~-~~~~~~~l~f~v~~k---~~feip~~~is~~~~ 141 (522)
.|. ..++++.+++.+.++ ..++||+++|..+++
T Consensus 87 G~~v~v~~~~~~~~~~~~~G~L~~~~~~~i~l~~~~~~~~~~~~I~~~~I~ka~L 141 (141)
T PF02576_consen 87 GRKVKVKLKQPVNGRKEFEGKLLEVDEDEITLEVEGKGKKKEVEIPFSDIKKARL 141 (141)
T ss_dssp SEEEEEE-SS-SSS-SEEEEEEEEEETTEEEEEEE-SS-EEEEEE-SS--SS-EE
T ss_pred CCeEEEEEeccCCCcEEEEEEEEEEeCCEEEEEECCccceEEEEEEHHHCceEeC
Confidence 122 345566777777666 478888888877653
No 55
>PHA02664 hypothetical protein; Provisional
Probab=33.08 E-value=40 Score=35.77 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHhhcCCCCceeeeee
Q 009912 79 DQDVATLTNFFQSNFGISPEEKQLSV 104 (522)
Q Consensus 79 ~~d~~~l~~~~~~~~~~~l~~~e~s~ 104 (522)
..|.+-|...+.-.||++--++.+-.
T Consensus 59 padveglmteihlrygmtrvhrnvhf 84 (534)
T PHA02664 59 PADVEGLMTEIHLRYGMTRVHRNVHF 84 (534)
T ss_pred CchhhhhHhHHHhhhhhhhhhhccce
Confidence 35788888888888888866655443
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=30.86 E-value=39 Score=38.16 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=8.9
Q ss_pred ccceeEEEeeecCCCCe
Q 009912 246 YSSVVRLFLLPKSNQPH 262 (522)
Q Consensus 246 y~~I~r~FlLP~pd~~~ 262 (522)
-++|...+=+|+|++.+
T Consensus 96 ~~~veK~~~q~~~~k~~ 112 (678)
T KOG0127|consen 96 NKAVEKPIEQKRPTKAK 112 (678)
T ss_pred chhhhcccccCCcchhh
Confidence 34555555555555433
No 57
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.92 E-value=43 Score=39.36 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=8.0
Q ss_pred ChHHHHHHHHHhhc
Q 009912 186 PPAQVFRDKIMSMA 199 (522)
Q Consensus 186 ~~a~~f~~~i~~ka 199 (522)
..+.+|..+|+..|
T Consensus 572 ~RV~AFvKRlLQVa 585 (988)
T KOG2038|consen 572 QRVRAFVKRLLQVA 585 (988)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666553
No 58
>COG4909 PduC Propanediol dehydratase, large subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.90 E-value=45 Score=35.85 Aligned_cols=44 Identities=20% Similarity=0.471 Sum_probs=35.1
Q ss_pred cCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceee
Q 009912 57 PRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQ 101 (522)
Q Consensus 57 ~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e 101 (522)
+...--.|.++||.++.+||-.+.||+-|-.|+.+ |+|+++.-+
T Consensus 34 pndpkpsiki~ng~v~eldgk~~~dfdlidhfiar-ygidl~rae 77 (554)
T COG4909 34 PNDPKPSIKIKNGRVIELDGKLEHDFDLIDHFIAR-YGIDLERAE 77 (554)
T ss_pred CCCCCCcceeccCeEEeecCccccchhHHHHHHHH-hCCChhhhH
Confidence 45555567788999999999999999988777766 499887544
No 59
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=29.88 E-value=1.4e+02 Score=25.04 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=36.4
Q ss_pred CCCcceEEE--cCeeEEcCCcceEEEEeec---cEEEecccceeEeeccceeEE
Q 009912 204 GGEEAVVTF--EGIAILTPRGRYSVELHLS---FLRLQGQANDFKIQYSSVVRL 252 (522)
Q Consensus 204 ~~g~~i~~f--~dI~~ltPRGRydie~~~~---~lrl~gkt~dykI~y~~I~r~ 252 (522)
.+|..+-.+ .|+.+-.-.|+-.--+-+. .+.|.|+..++.|||++|+++
T Consensus 14 ~~G~~lG~v~~~Dl~iD~~~G~I~aiIi~~~~~~~~~~~~~~~~~Ipw~~I~kI 67 (76)
T TIGR02888 14 NDGERLGVIGNIDLEIDEEDGRILSLIIPGKGKKFGLFSKGEEIEIPWDAIKKI 67 (76)
T ss_pred CCCcEeeccccceEEEECCCCEEEEEEEeCCCcEEEeecCCcEEEEEhhhccEE
Confidence 478888888 6888777678754333333 566778888899999999986
No 60
>PF15406 PH_6: Pleckstrin homology domain
Probab=29.12 E-value=81 Score=28.51 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=41.2
Q ss_pred eeEEEeccCceeecccCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCceEEEeeechhhhhhHHHHHhc
Q 009912 359 DGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISG 433 (522)
Q Consensus 359 ~G~LypLe~~~lfl~KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~~~Fs~I~reE~~~L~~fl~~ 433 (522)
.|+||+.+..- =.-|.=.|.+.|+..|+=+ | ..-|-+.+ +|..|+|-.-+-.|.++-...|+.
T Consensus 49 KGLLF~~K~~d--ka~P~GiinLadase~~~~---g----~~kF~f~~---~G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 49 KGLLFFSKAED--KASPSGIINLADASEPEKD---G----SNKFHFKI---KGHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred ceEEEEecccc--ccCCcceEehhhccccccC---C----CceEEEEe---CCceeeeecCCHHHhccHHHHhhc
Confidence 56776663110 0126669999999888743 1 24565555 688999999998888765555543
No 61
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=28.77 E-value=3.3e+02 Score=24.95 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=42.6
Q ss_pred eEeeccCceeEEEeccCceeecc-------cCC-EEEEcCceEEEEEEEecCCCcceeeEEEEEEEecC
Q 009912 351 VKSSLKAEDGVLYPLEKSFFFLP-------KPP-TLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE 411 (522)
Q Consensus 351 VkCs~Ka~~G~LypLe~~~lfl~-------KPp-~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g 411 (522)
|-+.+|.....+.++++-+|++- |-- .-|||..|.+++++-.|.. -..-.|.|.+.+.
T Consensus 33 I~~ayk~iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~---DlD~Elki~i~~~ 98 (124)
T PF08000_consen 33 IEAAYKLIRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTF---DLDSELKIWISGQ 98 (124)
T ss_dssp EEEEEEESSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSST---TSEEEEEEEETTE
T ss_pred eeeeehhhceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcc---cCcccEEEEECCC
Confidence 55778888889999999999964 222 3699999999999985432 2455666666553
No 62
>PF14317 YcxB: YcxB-like protein
Probab=27.95 E-value=1.2e+02 Score=22.58 Aligned_cols=30 Identities=7% Similarity=0.136 Sum_probs=24.5
Q ss_pred EeeccEEEecccceeEeeccceeEEEeeec
Q 009912 228 LHLSFLRLQGQANDFKIQYSSVVRLFLLPK 257 (522)
Q Consensus 228 ~~~~~lrl~gkt~dykI~y~~I~r~FlLP~ 257 (522)
+++++|+++.......++|++|.++.--|.
T Consensus 1 f~~~gi~~~~~~~~~~~~w~~i~~v~e~~~ 30 (62)
T PF14317_consen 1 FDEDGIIIESGNGSSRIPWSDIKKVVETKD 30 (62)
T ss_pred CCCCEEEEEECCeEEEEEchheEEEEEeCC
Confidence 357888888877889999999999876655
No 63
>COG4343 CRISPR-associated protein, RecB family exonuclease [Defense mechanisms]
Probab=27.93 E-value=17 Score=37.26 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=21.7
Q ss_pred eeeeeeeeeeeeeeEecCceEEEEeCCEeEEEEecccccc
Q 009912 99 EKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQ 138 (522)
Q Consensus 99 ~~e~s~~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~ 138 (522)
...-.++||||++.=+.. .+-.-+++++|.-
T Consensus 21 ~V~eELRGWnw~~PPVkp---------~~~~~lslSdi~y 51 (281)
T COG4343 21 PVYEELRGWNWNEPPVKP---------PRYVRLSLSDIVY 51 (281)
T ss_pred CCcHHhcCCcCCCCCCCC---------ccccCccHHHhhc
Confidence 344468999999875443 3445678888887
No 64
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=26.44 E-value=99 Score=25.03 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=36.1
Q ss_pred EEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeee
Q 009912 62 LGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGR 107 (522)
Q Consensus 62 Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~Gw 107 (522)
|+|.+.+|..+.+.=-..+-...||+.+.+..|+..++..|...|+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~ 46 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGK 46 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCe
Confidence 5677778877666666667799999999999999888877766554
No 65
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=25.77 E-value=23 Score=41.80 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=12.0
Q ss_pred eeeEEEEEEEecCceEEEee
Q 009912 399 MHYFDLLIRLKTEQEHLFRN 418 (522)
Q Consensus 399 ~rTFDl~v~~K~g~~~~Fs~ 418 (522)
..|....+.+..|.-|.|.+
T Consensus 573 ~~Tt~~rv~l~~G~WYLl~s 592 (787)
T PF03115_consen 573 SNTTQVRVRLNQGNWYLLQS 592 (787)
T ss_dssp SS-EEEEEEE-TT-EEEEEE
T ss_pred cccceeeEEecCCcEEEEEE
Confidence 36778888888886665555
No 66
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=25.21 E-value=50 Score=29.69 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=48.5
Q ss_pred CCCCeeEEEecCceeEEeCCC-------C-ceE--------EEecCCcceeEEEEec-CcceEEEEEeCCcEEEEcCCCh
Q 009912 17 GTNPGQLKIYSGKISWKKLGG-------G-KAV--------EVDKVDIAGVTWMKVP-RTNQLGVRTKDGLYYKFTGFRD 79 (522)
Q Consensus 17 ~~~~G~lk~~~~gl~wK~~~~-------g-~~~--------~i~~~di~~~~w~r~~-~~~~Lri~~k~~~~~~fdGF~~ 79 (522)
...+|+|.|+...|-|-...+ + .+. ..+=++|+++.|.|.- |.-.|.|++.++.-+.| .|.
T Consensus 16 ~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~~~~f~-~F~- 93 (108)
T cd01201 16 VVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALELFLASRTSIFF-AFP- 93 (108)
T ss_pred EEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEEEEeCCceEEE-EeC-
Confidence 457999999999999997421 1 112 5677888888888875 89999999999855544 355
Q ss_pred hhHHHHHHH
Q 009912 80 QDVATLTNF 88 (522)
Q Consensus 80 ~d~~~l~~~ 88 (522)
+.+..++.
T Consensus 94 -~~~~~k~v 101 (108)
T cd01201 94 -DQNAVKKV 101 (108)
T ss_pred -cHHHHHHH
Confidence 33444433
No 67
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=24.94 E-value=2.2e+02 Score=26.07 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=53.8
Q ss_pred CCCeeEEEecCceeEEeCC-CCceEEEecCCcceeEEEEe--c-CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhc
Q 009912 18 TNPGQLKIYSGKISWKKLG-GGKAVEVDKVDIAGVTWMKV--P-RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNF 93 (522)
Q Consensus 18 ~~~G~lk~~~~gl~wK~~~-~g~~~~i~~~di~~~~w~r~--~-~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~ 93 (522)
...|.+-+.+.++-|-|++ ...-++||+++|..+.=+=. + .-....|.++.++.+.|.. .|--++-+.+++|.
T Consensus 22 ~~yGkimiGDkaFEFyn~~n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~~G~f~Fss---kd~k~~Lk~~r~yv 98 (118)
T PF06115_consen 22 GKYGKIMIGDKAFEFYNDRNVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKKNGKFTFSS---KDSKKVLKAIRKYV 98 (118)
T ss_pred cccCeEEEcccceEeecCCChhhcEEeChhheeEEEEEEEECCCEEeeEEEEECCCCEEEEEE---CChHHHHHHHHHhc
Confidence 4889999999999997764 45779999999987654433 1 2223667788877888764 45556667777775
Q ss_pred CC
Q 009912 94 GI 95 (522)
Q Consensus 94 ~~ 95 (522)
+-
T Consensus 99 ~~ 100 (118)
T PF06115_consen 99 GN 100 (118)
T ss_pred CH
Confidence 53
No 68
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=24.72 E-value=39 Score=36.38 Aligned_cols=6 Identities=67% Similarity=0.872 Sum_probs=2.7
Q ss_pred cCcCCc
Q 009912 481 EDSDFV 486 (522)
Q Consensus 481 eDeDF~ 486 (522)
.|.||.
T Consensus 61 ~DsDfs 66 (390)
T KOG2897|consen 61 VDSDFS 66 (390)
T ss_pred cccccc
Confidence 344443
No 69
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=24.67 E-value=46 Score=41.07 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=14.5
Q ss_pred CCEeEEEEeccccccccccCC
Q 009912 124 GQKQAFEVSLADVSQTQLQGK 144 (522)
Q Consensus 124 ~~k~~feip~~~is~~~~~~K 144 (522)
+..|.|-+-++++..-+-+|-
T Consensus 1230 DDSPLfiLC~NDtCSFTWTGa 1250 (3015)
T KOG0943|consen 1230 DDSPLFILCCNDTCSFTWTGA 1250 (3015)
T ss_pred CCCceEEEEecCccceeecch
Confidence 456778777777777666553
No 70
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=24.25 E-value=4.4e+02 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=24.8
Q ss_pred cccCCCcceEEEcCeeEEcCCcceEEEEe
Q 009912 201 VGAGGEEAVVTFEGIAILTPRGRYSVELH 229 (522)
Q Consensus 201 i~~~~g~~i~~f~dI~~ltPRGRydie~~ 229 (522)
..-..|+.|...-.+.+..|||+|.|.+.
T Consensus 67 ~~l~~G~~V~v~g~~~~y~~~G~~sl~v~ 95 (99)
T PF13742_consen 67 FDLKDGDKVLVRGRVSFYEPRGSLSLIVE 95 (99)
T ss_pred CCCCCCCEEEEEEEEEEECCCcEEEEEEE
Confidence 33458999999999999999999998774
No 71
>PF13619 KTSC: KTSC domain
Probab=23.94 E-value=85 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.296 Sum_probs=23.6
Q ss_pred EEEEEEecCceEEEeeechhhhhhHHH
Q 009912 403 DLLIRLKTEQEHLFRNIQRNEYHNLFD 429 (522)
Q Consensus 403 Dl~v~~K~g~~~~Fs~I~reE~~~L~~ 429 (522)
-|.|.+++|..+++.++|.+.++.|..
T Consensus 17 ~L~V~F~~G~~Y~Y~~Vp~~~~~~l~~ 43 (60)
T PF13619_consen 17 TLEVEFKSGSVYRYFGVPPEVYEALLN 43 (60)
T ss_pred EEEEEEcCCCEEEECCCCHHHHHHHHc
Confidence 477888999999999999999988753
No 72
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=23.46 E-value=1.9e+02 Score=24.27 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=34.3
Q ss_pred CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCc
Q 009912 58 RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPE 98 (522)
Q Consensus 58 ~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~ 98 (522)
...+|+|...+|..+.|.=-+.+-+.+|++.+.+..++...
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~ 50 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMN 50 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCcc
Confidence 45567777788999999988888999999999999887654
No 73
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=23.37 E-value=2.6e+02 Score=23.77 Aligned_cols=38 Identities=26% Similarity=0.481 Sum_probs=22.1
Q ss_pred CCCeeEEEecCc-----eeEEeCCC-Cce---EEEecCCcceeEEEEecC
Q 009912 18 TNPGQLKIYSGK-----ISWKKLGG-GKA---VEVDKVDIAGVTWMKVPR 58 (522)
Q Consensus 18 ~~~G~lk~~~~g-----l~wK~~~~-g~~---~~i~~~di~~~~w~r~~~ 58 (522)
..+|.|.|..+. |.|++..+ |.+ +-|.++ .+.|.++..
T Consensus 14 ~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg---~~~f~~V~~ 60 (85)
T PF04683_consen 14 PRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPG---DATFKKVPQ 60 (85)
T ss_dssp SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TT---TEEEEE-TT
T ss_pred CCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCC---CeEEEECCc
Confidence 467888887753 78999887 533 233333 467888853
No 74
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=22.82 E-value=6.3e+02 Score=23.56 Aligned_cols=90 Identities=18% Similarity=0.352 Sum_probs=58.7
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCC-----ceeeeeeeeeee------------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISP-----EEKQLSVSGRNW------------ 109 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l-----~~~e~s~~GwNw------------ 109 (522)
+|-.+.|.+-++...|||.+-.. +|-.-+|.+.+++.+...++..- +.=|+|..|-+.
T Consensus 23 ~l~dv~~~~~~~~~~l~V~Id~~-----~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~RpL~~~~~f~r~~ 97 (154)
T PRK00092 23 ELVDVEYVKEGRDSTLRIYIDKE-----GGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRPLKKARDFRRFI 97 (154)
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCCcCCCHHHHHHhC
Confidence 46678888888888999998432 46688899999988888776321 233444444211
Q ss_pred -------------------eee-EecCceEEEEeCCEe-EEEEeccccccccc
Q 009912 110 -------------------GEV-DLNGNMLTFMVGQKQ-AFEVSLADVSQTQL 141 (522)
Q Consensus 110 -------------------G~~-~~~~~~l~f~v~~k~-~feip~~~is~~~~ 141 (522)
|.+ .++++.+.+.+.+++ ..+||+++|..+++
T Consensus 98 G~~v~V~~~~~~~~~~~~~G~L~~~~~~~i~l~~~~~~~~~~i~~~~I~~a~l 150 (154)
T PRK00092 98 GREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGKEKEVEIPLDNIAKARL 150 (154)
T ss_pred CCeEEEEEEcccCCceEEEEEEEEeeCCEEEEEECCCeEEEEEEHHHcceEEE
Confidence 111 234556777776653 67888888887765
No 75
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=22.48 E-value=3.4e+02 Score=21.32 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=40.2
Q ss_pred ceEEEecCCcceeEEEEec-----CcceEEEEEeCCcE--EEEcCCChhhHHHHHHH
Q 009912 39 KAVEVDKVDIAGVTWMKVP-----RTNQLGVRTKDGLY--YKFTGFRDQDVATLTNF 88 (522)
Q Consensus 39 ~~~~i~~~di~~~~w~r~~-----~~~~Lri~~k~~~~--~~fdGF~~~d~~~l~~~ 88 (522)
+...++-+.|.++++.+.. +-..|++.+.++.. ..+-+...++.+.|.++
T Consensus 23 ~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~~~i~~~~~~~a~~i~~~ 79 (80)
T PF03703_consen 23 RTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEKIEIPFLSIEDAEEIYDW 79 (80)
T ss_pred EEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCceeEEecCCHHHHHHHHhh
Confidence 4679999999999997643 66778888877764 77888999999888765
No 76
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=22.47 E-value=78 Score=33.83 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=7.3
Q ss_pred eeEEEEEEEec
Q 009912 400 HYFDLLIRLKT 410 (522)
Q Consensus 400 rTFDl~v~~K~ 410 (522)
+.|-|+++++.
T Consensus 142 ~gf~I~F~F~~ 152 (337)
T PTZ00007 142 EGFILVFTFAP 152 (337)
T ss_pred CceEEEEEeCC
Confidence 55777777764
No 77
>TIGR01896 cas_AF1879 CRISPR-associated protein, Csa1 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model describes a particularly strongly conserved family found so only in the APERN subtype of CRISPR/Cas loci and represented by AF1879 from Archaeoglobus fulgidus. This family has four perfectly preserved Cys residues. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa1, for CRISPR/Cas Subtype Protein 1.
Probab=21.57 E-value=27 Score=36.18 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=27.0
Q ss_pred eeeeeeeeeeEecCceEEEEeCCEeEEEEeccccccccccCCCeEEEEE
Q 009912 103 SVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEF 151 (522)
Q Consensus 103 s~~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~KnEv~lef 151 (522)
.++||||+..=+.- ..-.-+++++|++.--+++-+|=|--
T Consensus 16 eLRGW~w~~pPv~P---------~~~~~l~v~dva~~yCpt~RdvyLrr 55 (271)
T TIGR01896 16 ELRGWHWNEPPVKP---------PRYLGLSLSDVAYGYCPTGRDVYLKR 55 (271)
T ss_pred HhcCCCCCCCCCCC---------cccCCCCHHHHccCCCCCcchhhhhh
Confidence 46999999854332 22235778999976666777776653
No 78
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=21.45 E-value=57 Score=32.99 Aligned_cols=7 Identities=0% Similarity=0.060 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 009912 494 SPTDDSG 500 (522)
Q Consensus 494 ee~Ds~~ 500 (522)
||.+|.+
T Consensus 248 ~e~~ses 254 (303)
T COG5129 248 EEESSES 254 (303)
T ss_pred ccccccc
Confidence 3444433
No 79
>cd03687 Dehydratase_LU Dehydratase large subunit. This family contains the large (alpha) subunit of B12-dependent glycerol dehydratases (GDHs) and B12-dependent diol dehydratases (DDHs). GDH is isofunctional with DDH. These enzymes can each catalyze the conversion of 1,2-propanediol, glycerol, and 1,2-ethanediol to the corresponding aldehydes via a coenzyme B12 (adenosylcobalamin)-dependent radical mechanism. Both enzymes exhibit a subunit composition of alpha2beta2gamma2. The enzymes differ in substrate specificity; glycerol is the preferred substrate for GDH and 1,2-propanediol for DDH. GDH shows almost equal affinity for both (R) and (S)-isomers while DDH prefers the (S) isomer. GDH plays a key role in the dihydroxyacetone (DHA) pathway and DDH in the anaerobic degradation of 1,2-diols. The radical mechanism has been well studied for Klebsiella oxytoca DDH and involves binding of 1,2-propanediol to the enzyme to induce hemolytic cleavage of the Co-C5' bond of the coenzyme to form co
Probab=21.43 E-value=86 Score=34.60 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=34.9
Q ss_pred CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeee
Q 009912 58 RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQL 102 (522)
Q Consensus 58 ~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~ 102 (522)
....=.|.+.||.++.+||=+.+||+-|-.|+.+| +|+++.-|-
T Consensus 28 ~DPkPSikienG~vvEmDgk~~~dFD~ID~FIA~y-~I~~~~ae~ 71 (545)
T cd03687 28 NDPKPSIKIVNGRVVELDGKPVADFDMIDHFIARY-GINLERAEE 71 (545)
T ss_pred CCCCCceEeecCeEEeccCcchHhhhhHHHHHHHh-ccChhhHHH
Confidence 34444555689999999999999999999998875 888765543
No 80
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=21.05 E-value=1.6e+02 Score=22.57 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=28.8
Q ss_pred EEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeeeeeeeeEecC
Q 009912 71 YYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNG 116 (522)
Q Consensus 71 ~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~GwNwG~~~~~~ 116 (522)
-+...||..++.+.+..+|++ ||- +.+..+. .+-||-.+.+.+
T Consensus 3 wI~V~Gf~~~~~~~vl~~F~~-fGe-I~~~~~~-~~~~~~~l~y~~ 45 (53)
T PF14605_consen 3 WISVSGFPPDLAEEVLEHFAS-FGE-IVDIYVP-ESTNWMYLKYKS 45 (53)
T ss_pred EEEEEeECchHHHHHHHHHHh-cCC-EEEEEcC-CCCcEEEEEECC
Confidence 467789999999999999996 773 2222222 256666665543
No 81
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=20.87 E-value=68 Score=35.81 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=9.6
Q ss_pred hHHHHHhcCCcEEEeCC
Q 009912 426 NLFDFISGKGLKIMNLG 442 (522)
Q Consensus 426 ~L~~fl~~k~i~i~n~~ 442 (522)
.-..=+..+|+.+.+.|
T Consensus 155 ea~etC~tk~mil~~~g 171 (615)
T KOG3540|consen 155 EAMETCSTKGMILHSYG 171 (615)
T ss_pred HHHHHhccCCeeeeccc
Confidence 34445566666666654
No 82
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=20.73 E-value=47 Score=35.03 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=11.0
Q ss_pred EEeeechhhhhhHHHHHhcC
Q 009912 415 LFRNIQRNEYHNLFDFISGK 434 (522)
Q Consensus 415 ~Fs~I~reE~~~L~~fl~~k 434 (522)
.-+.|+-.| .|..|....
T Consensus 64 ~~~~i~G~e--lL~~~~~~~ 81 (324)
T PF05285_consen 64 VADGIPGAE--LLEEWKEEE 81 (324)
T ss_pred cccCCChHH--HHHHHhhcc
Confidence 355666655 477786554
Done!