Query 009912
Match_columns 522
No_of_seqs 196 out of 395
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gcl_A Hypothetical 63.0 kDa p 100.0 2.5E-83 8.5E-88 639.6 25.7 257 186-442 2-259 (261)
2 3f5r_A FACT complex subunit PO 100.0 2.7E-53 9.2E-58 402.6 10.4 160 1-163 21-188 (191)
3 3fss_A Histone chaperone RTT10 100.0 6E-32 2E-36 262.5 23.3 211 205-434 5-237 (237)
4 3f5r_A FACT complex subunit PO 96.1 0.022 7.5E-07 54.2 9.3 78 358-441 36-125 (191)
5 2gcl_A Hypothetical 63.0 kDa p 93.8 0.13 4.3E-06 51.2 7.6 76 19-98 174-256 (261)
6 3fss_A Histone chaperone RTT10 92.1 0.24 8.2E-06 48.4 6.6 72 18-91 164-236 (237)
7 1y5o_A TFB1, RNA polymerase II 85.4 5.3 0.00018 34.9 9.5 73 18-92 11-107 (115)
8 1pfj_A TFIIH basal transcripti 77.4 5.4 0.00018 34.5 6.7 75 18-92 19-99 (108)
9 1ib8_A Conserved protein SP14. 62.5 49 0.0017 30.1 10.1 90 47-141 27-158 (164)
10 1pfj_A TFIIH basal transcripti 56.8 29 0.001 29.9 7.0 76 353-433 15-98 (108)
11 1zyi_A Methylosome subunit pic 47.0 89 0.003 28.9 9.1 93 100-202 32-143 (171)
12 1y5o_A TFB1, RNA polymerase II 44.0 79 0.0027 27.5 7.7 75 352-433 6-106 (115)
13 3hsa_A Pleckstrin homology dom 44.0 1.1E+02 0.0036 27.0 8.7 79 351-432 34-121 (126)
14 2zd7_A VPS75, vacuolar protein 41.0 6.8 0.00023 38.7 0.6 11 400-410 101-111 (264)
15 1yyc_A LEA protein, putative l 39.5 2.3E+02 0.0078 26.0 11.6 91 81-173 27-120 (174)
16 3b77_A Uncharacterized protein 36.3 2.2E+02 0.0076 26.8 10.0 58 335-392 6-81 (193)
17 3k9o_B Ubiquitin, UBB+1; E2-25 34.1 65 0.0022 25.6 5.4 48 59-106 1-48 (96)
18 2ca6_A RAN GTPase-activating p 32.1 13 0.00043 37.1 0.9 40 67-110 6-45 (386)
19 4dwf_A HLA-B-associated transc 30.0 65 0.0022 25.4 4.7 48 59-106 5-52 (90)
20 4eew_A Large proline-rich prot 29.4 67 0.0023 25.2 4.7 53 55-107 13-65 (88)
21 2ehp_A AQ_1627 protein; putati 27.9 88 0.003 26.9 5.2 44 55-98 71-116 (126)
22 4hcn_B Polyubiquitin, ubiquiti 27.6 94 0.0032 25.1 5.4 49 58-106 21-69 (98)
23 2ca6_A RAN GTPase-activating p 26.3 18 0.00062 35.9 0.9 23 419-441 286-310 (386)
24 1q1s_A Large T antigen; import 24.9 29 0.001 22.4 1.3 8 515-522 16-23 (26)
25 4fbj_B NEDD8; effector-HOST ta 24.8 1.1E+02 0.0039 24.1 5.3 46 61-106 2-47 (88)
26 3u12_A USP37 protein; structur 24.3 1.8E+02 0.0061 26.1 6.7 56 41-96 65-122 (141)
27 3n3k_B Ubiquitin; hydrolase, p 24.2 1E+02 0.0036 23.5 4.9 47 60-106 4-50 (85)
28 3v6c_B Ubiquitin; structural g 23.8 1E+02 0.0034 24.4 4.8 49 58-106 16-64 (91)
29 3phx_B Ubiquitin-like protein 23.3 1.1E+02 0.0038 23.2 4.9 48 59-106 4-51 (79)
30 3a9j_A Ubiquitin; protein comp 23.2 1.4E+02 0.0046 22.1 5.2 46 61-106 2-47 (76)
31 2dzi_A Ubiquitin-like protein 20.6 1.5E+02 0.0052 22.3 5.1 49 58-106 6-54 (81)
No 1
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=100.00 E-value=2.5e-83 Score=639.61 Aligned_cols=257 Identities=34% Similarity=0.650 Sum_probs=227.7
Q ss_pred ChHHHHHHHHHhhcccccCCCcceEEEcCeeEEcCCcceEEEEeeccEEEecccceeEeeccceeEEEeeecCCCCeEEE
Q 009912 186 PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFV 265 (522)
Q Consensus 186 ~~a~~f~~~i~~ka~i~~~~g~~i~~f~dI~~ltPRGRydie~~~~~lrl~gkt~dykI~y~~I~r~FlLP~pd~~~~~~ 265 (522)
++|++|+++||+||+|++++|++||+|+||+|+||||||+|+||+++||||||||||+|+|++|+|+|+||+||+.|++|
T Consensus 2 ~~~~~~~~~i~~ka~i~~~~gd~i~~~~dv~~ltPRGrydi~~~~~~lrl~gkt~dyki~~~~I~r~f~LP~pd~~~~~~ 81 (261)
T 2gcl_A 2 HMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMM 81 (261)
T ss_dssp ------------------CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEE
T ss_pred cHHHHHHHHHHhhccccccCCceEEEEcCceEEcCCCceEEEEecCcEEEeCCcccceechhhEEEEEEccCCCcCceEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCccCCCccCceEEEEEeccceeeeeccCCHHHHhhHhhcccccccccchHHHHHHHHhhhcCCeeeccCCcccC
Q 009912 266 VVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSA 345 (522)
Q Consensus 266 vi~Ld~PirqGqTky~~lv~QF~~e~~~~~elnl~eeel~ek~~~kL~~~~~g~~~ev~~~i~k~l~~~ki~~P~~F~s~ 345 (522)
||.|+||+|||||+|+||||||++++++++++|+++++++++|+++|+++|+|++|++|+++||+|+|+||+.|+.|+|+
T Consensus 82 vi~ld~PirqGqt~y~~lV~qf~~~e~~~~~ln~~~~~~~~ky~~~L~~~~~g~~~~vv~~ilk~l~g~kv~~P~~F~S~ 161 (261)
T 2gcl_A 82 VMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSK 161 (261)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCT
T ss_pred EEecCCCccCCCccCCeEEEEEeCCCceEeeecCCHHHHhhhhccccccccCCcHHHHHHHHHHHhcCCeeecCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEeeccCceeEEEeccCceeecccCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecC-ceEEEeeechhhh
Q 009912 346 QDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE-QEHLFRNIQRNEY 424 (522)
Q Consensus 346 ~g~~~VkCs~Ka~~G~LypLe~~~lfl~KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g-~~~~Fs~I~reE~ 424 (522)
.|++||+|++||++|+||||++||||+||||+||+|+||++|+|+|+|++++++|||||+|++|+| ++|+|+||+|+||
T Consensus 162 ~~~~~Vkcs~ka~eG~LypL~~gflF~~KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~ 241 (261)
T 2gcl_A 162 YDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQ 241 (261)
T ss_dssp TSCSCEEEEETTEEEEEEECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGH
T ss_pred CCCceEEEeccCCceEEEEecCceEEeeCCcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCCccEEEcccCHHHH
Confidence 999999999999999999999999999999999999999999999998765557999999999999 9999999999999
Q ss_pred hhHHHHHhcCCcEEEeCC
Q 009912 425 HNLFDFISGKGLKIMNLG 442 (522)
Q Consensus 425 ~~L~~fl~~k~i~i~n~~ 442 (522)
++|++||++|+|+|+|++
T Consensus 242 ~~L~~ylk~k~l~ikn~~ 259 (261)
T 2gcl_A 242 QLLEQFLKSKNLRVKNED 259 (261)
T ss_dssp HHHHHHHHHTTCCEEC--
T ss_pred HHHHHHHHHcCCeeecCC
Confidence 999999999999999984
No 2
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-53 Score=402.59 Aligned_cols=160 Identities=29% Similarity=0.519 Sum_probs=101.4
Q ss_pred CCCCCcccceEecCCCCCCCeeEEEecCceeEEeC-CCC-------ceEEEecCCcceeEEEEecCcceEEEEEeCCcEE
Q 009912 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKL-GGG-------KAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYY 72 (522)
Q Consensus 1 m~~~~~f~~i~~~~~g~~~~G~lk~~~~gl~wK~~-~~g-------~~~~i~~~di~~~~w~r~~~~~~Lri~~k~~~~~ 72 (522)
|+ .++|+|||+++ +..+|+|||+++||+||++ +|| ++++|+++||.+|+|+|++|+|+|||.+|+|.+|
T Consensus 21 m~-~~~F~nI~l~~--s~~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~rg~~LrI~~K~g~~~ 97 (191)
T 3f5r_A 21 GM-STDFDRIYLNQ--SKFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 97 (191)
T ss_dssp CS-SEEEEEEEETT--CSSCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECSSSEEEEEEESSSCEE
T ss_pred ee-eeeECcEeecC--CCcccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEccCCcEEEEEECCCceE
Confidence 54 58999999998 8999999999999999999 999 9999999999999999999999999999999999
Q ss_pred EEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeeeeeeeeEecCceEEEEeCCEeEEEEeccccccccccCCCeEEEEEe
Q 009912 73 KFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFH 152 (522)
Q Consensus 73 ~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~KnEv~lef~ 152 (522)
+||||+++|+++|++||+++|+++|+++|||++|||||+++|+|++|+|.|++||||||||++|||||++|||||+||||
T Consensus 98 ~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kGwNWG~~~f~g~~L~F~v~~KpaFEIPls~VSn~nl~gKNEValEFh 177 (191)
T 3f5r_A 98 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIPYARINNTNLTSKNEVGIEFN 177 (191)
T ss_dssp EEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTTC---------------------------------------------
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCceeeeeecccccceecEEcCCEEEEEeCCeeEEEecHHHhhhcccCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC
Q 009912 153 VDDTTGANEKD 163 (522)
Q Consensus 153 ~~~~~~~~~~d 163 (522)
++++..+..+|
T Consensus 178 ~~~~~~~~~~d 188 (191)
T 3f5r_A 178 IQDEEYQPAGD 188 (191)
T ss_dssp -----------
T ss_pred cCCccccCCCC
Confidence 98765333344
No 3
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=100.00 E-value=6e-32 Score=262.49 Aligned_cols=211 Identities=18% Similarity=0.312 Sum_probs=154.2
Q ss_pred CCcceEEEcCeeEEcC-CcceEEEEeecc-----EEEeccc--ceeEee--ccceeEEEeeecCCCCe-EEEEEecCCCc
Q 009912 205 GEEAVVTFEGIAILTP-RGRYSVELHLSF-----LRLQGQA--NDFKIQ--YSSVVRLFLLPKSNQPH-TFVVVTLDPPI 273 (522)
Q Consensus 205 ~g~~i~~f~dI~~ltP-RGRydie~~~~~-----lrl~gkt--~dykI~--y~~I~r~FlLP~pd~~~-~~~vi~Ld~Pi 273 (522)
..+.|..+++|+|++| |+|.+|.+|-+- +.-..++ -++.|. +++|+-++|||.|++.. .++++ ..++.
T Consensus 5 ~~~iIfei~~vS~~sP~RKKlnl~~hl~~~~~~P~lsi~~~~~~E~si~~l~~~i~~~~~LPvpeK~~~~~l~i-~~~~~ 83 (237)
T 3fss_A 5 ETNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIYLFM-TYTSC 83 (237)
T ss_dssp -CEEEEEEEEEEEEESSCEEEEEEEEECTTTCCEEEEEEETTEEEEEECCHHHHEEEEEEEECTTCTTEEEEEE-EESCC
T ss_pred cceEEEEecceeEeccccceEEEEEEECCCCCceEEEEecCCCceEEhhhhhcceeEEEEecCCccCCceEEEE-EecCC
Confidence 3568999999999999 999999999641 2222333 266775 89999999999999755 34444 34443
Q ss_pred cCCCccCceEEEEEeccceeeeeccCCHHHHhhHhhcccccccccchHHHHHHHHh---hhcCCeeeccCCccc------
Q 009912 274 RKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILR---GLSGAKITKPGKFRS------ 344 (522)
Q Consensus 274 rqGqTky~~lv~QF~~e~~~~~elnl~eeel~ek~~~kL~~~~~g~~~ev~~~i~k---~l~~~ki~~P~~F~s------ 344 (522)
. +.+.-..||+|++.+... ..+. -.+.+...-. -|+-+..-|+ .|||.++.-|-.+.+
T Consensus 84 ~-~~~~~dPiv~t~n~~~~~--------kq~~--~~g~~~~~~~--~f~~~i~~~~rQ~~l~G~~i~~pf~~~~~~~~~~ 150 (237)
T 3fss_A 84 E-DNKFSEPVVMTLNKENTL--------NQFK--KLGLLDSNVT--DFEKCVEYIRKQAILTGFKISNPFVNSTLVDTDA 150 (237)
T ss_dssp G-GGCCCSCEEEEEEHHHHH--------HHHH--HTTSSCTTCC--CTHHHHHHHHHHHHHTTCCCBCTTC---------
T ss_pred C-CCCCCCCEEEEEchHHhh--------hhhh--hcCCCcccch--hHHHHHHHHHHHHhhcCeeccCcccccccccCCC
Confidence 3 233345799999876311 1111 1223333222 1233222222 578988877754433
Q ss_pred -CCCCceeEeeccCceeEEEeccCceeec-ccCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCceEEEeeechh
Q 009912 345 -AQDGYAVKSSLKAEDGVLYPLEKSFFFL-PKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRN 422 (522)
Q Consensus 345 -~~g~~~VkCs~Ka~~G~LypLe~~~lfl-~KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~~~Fs~I~re 422 (522)
....+||+|++||++|+||||++||||+ +||++||++++|++|+|+|++ +|||||+|++|+|.+|+|+||||+
T Consensus 151 ~~~~~~~Vkc~~kAkeG~LyfL~~~ilFgf~KP~l~i~~~dI~svs~Srv~-----~RTFdl~v~~k~g~e~eFsmIDq~ 225 (237)
T 3fss_A 151 EKINSFHLQCHRGTKEGTLYFLPDHIIFGFKKPILLLDASDIESITYSSIT-----RLTFNASLVTKDGEKYEFSMIDQT 225 (237)
T ss_dssp -CCCCEEEEEESSSSEEEEEECSSEEEEESSSSCEEEEGGGEEEEEEESCC-----SSEEEEEEEETTSCEEEEEEEEGG
T ss_pred CCCCceEEEEEcCCCCeEEEEecCceEEecCCCeEEEEehhEEEEEEEecc-----CcEEEEEEEECCCCeEEEeecCHH
Confidence 1236899999999999999999999995 999999999999999999985 599999999999999999999999
Q ss_pred hhhhHHHHHhcC
Q 009912 423 EYHNLFDFISGK 434 (522)
Q Consensus 423 E~~~L~~fl~~k 434 (522)
||++|++|+++|
T Consensus 226 E~~~Id~fvk~K 237 (237)
T 3fss_A 226 EYAKIDDYVKRK 237 (237)
T ss_dssp GHHHHHHHHHC-
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 4
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.022 Score=54.16 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=66.7
Q ss_pred ceeEEEeccCceeeccc-----------CCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCceEEEeeechhhhhh
Q 009912 358 EDGVLYPLEKSFFFLPK-----------PPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHN 426 (522)
Q Consensus 358 ~~G~LypLe~~~lfl~K-----------Pp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~~~Fs~I~reE~~~ 426 (522)
..|.|=.-+.+|.|=.. -++.|+-+||..+...|++ |.+-|.|.+|+|..++|.....++++.
T Consensus 36 ~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~------rg~~LrI~~K~g~~~~fdGF~~~D~~~ 109 (191)
T 3f5r_A 36 FSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGC------RGYDLKINTKNQGVIQLDGFSQDDYNL 109 (191)
T ss_dssp SCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECS------SSEEEEEEESSSCEEEEEEECGGGHHH
T ss_pred cccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEcc------CCcEEEEEECCCceEEecCCCHHHHHH
Confidence 46777777777777532 6689999999999999963 889999999999999999999999999
Q ss_pred HHHHHhcC-CcEEEeC
Q 009912 427 LFDFISGK-GLKIMNL 441 (522)
Q Consensus 427 L~~fl~~k-~i~i~n~ 441 (522)
|.+|+++. +|.+...
T Consensus 110 L~~~fk~~f~i~Le~k 125 (191)
T 3f5r_A 110 IKNDFHRRFNIQVEQR 125 (191)
T ss_dssp HHHHHHHHHCCCCEEC
T ss_pred HHHHHHHHcCCCceee
Confidence 99999988 7777664
No 5
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=93.79 E-value=0.13 Score=51.24 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=65.5
Q ss_pred CCeeEEEecCceeEEeCCCCceEEEecCCcceeEEEEe------cCcceEEEEEeCC-cEEEEcCCChhhHHHHHHHHHh
Q 009912 19 NPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKV------PRTNQLGVRTKDG-LYYKFTGFRDQDVATLTNFFQS 91 (522)
Q Consensus 19 ~~G~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~------~~~~~Lri~~k~~-~~~~fdGF~~~d~~~l~~~~~~ 91 (522)
..|-|=.=+.||-|=. + -+..|+-+||.+++.+|+ .|.+.|.|.+|+| ..+.|.+..++|++.|.+|+++
T Consensus 174 ~eG~LypL~~gflF~~-K--P~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~~~L~~ylk~ 250 (261)
T 2gcl_A 174 NEGYLYPLDNAFFFLT-K--PTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKS 250 (261)
T ss_dssp EEEEEEECSSEEEEES-S--SCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred CceEEEEecCceEEee-C--CcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCCccEEEcccCHHHHHHHHHHHHH
Confidence 5688888889999953 2 578999999999999996 3889999999999 9999999999999999999998
Q ss_pred hcCCCCc
Q 009912 92 NFGISPE 98 (522)
Q Consensus 92 ~~~~~l~ 98 (522)
+ ++.+.
T Consensus 251 k-~l~ik 256 (261)
T 2gcl_A 251 K-NLRVK 256 (261)
T ss_dssp T-TCCEE
T ss_pred c-CCeee
Confidence 7 55543
No 6
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=92.11 E-value=0.24 Score=48.40 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=63.9
Q ss_pred CCCeeEEEecCceeEEeCCCCceEEEecCCcceeEEEEec-CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHh
Q 009912 18 TNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVP-RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQS 91 (522)
Q Consensus 18 ~~~G~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~~-~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~ 91 (522)
...|-|=+-+.+|-|==.+ -+.-++-+||.++..+|++ |.|.|.|.+|+|.-+.|.-..+++++.|.+|+++
T Consensus 164 AkeG~LyfL~~~ilFgf~K--P~l~i~~~dI~svs~Srv~~RTFdl~v~~k~g~e~eFsmIDq~E~~~Id~fvk~ 236 (237)
T 3fss_A 164 TKEGTLYFLPDHIIFGFKK--PILLLDASDIESITYSSITRLTFNASLVTKDGEKYEFSMIDQTEYAKIDDYVKR 236 (237)
T ss_dssp SSEEEEEECSSEEEEESSS--SCEEEEGGGEEEEEEESCCSSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHHC
T ss_pred CCCeEEEEecCceEEecCC--CeEEEEehhEEEEEEEeccCcEEEEEEEECCCCeEEEeecCHHHHHHHHHHHhc
Confidence 4679999999999993111 4689999999999999985 8999999999999999999999999999999985
No 7
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=85.36 E-value=5.3 Score=34.88 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=62.4
Q ss_pred CCCeeEEEecC----ceeEEeCCCCceEEEecCCcceeEEEEe-cCcceEEEEEeC--------C-----------cEEE
Q 009912 18 TNPGQLKIYSG----KISWKKLGGGKAVEVDKVDIAGVTWMKV-PRTNQLGVRTKD--------G-----------LYYK 73 (522)
Q Consensus 18 ~~~G~lk~~~~----gl~wK~~~~g~~~~i~~~di~~~~w~r~-~~~~~Lri~~k~--------~-----------~~~~ 73 (522)
+..|.|.|+++ .|.|++..++++++|+-+.|...+=... +...-|||.-|- + .++.
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g~~~isI~l~~It~LQqTp~ts~KvmLKI~~k~~~~~~~~~~~~~~~~~~p~~~~F~ 90 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMFS 90 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECCTTCSSEEEEEEECSCCSSSCCCCSSCCSSCCCEEEEEE
T ss_pred ecccEEEEccCCCcceEEEEECCCCccEEEEhhhhhhhhcCCCCCCceEEEEEEeccccccccCCCcCCCCCCcceEEEE
Confidence 46799999988 8999996678999999999999888876 489999999883 3 4788
Q ss_pred EcCCChhhHHHHHHHHHhh
Q 009912 74 FTGFRDQDVATLTNFFQSN 92 (522)
Q Consensus 74 fdGF~~~d~~~l~~~~~~~ 92 (522)
|.. +.+.+.|+..|+..
T Consensus 91 Ftn--R~~~d~IKd~Lq~i 107 (115)
T 1y5o_A 91 FNN--RTVMDNIKMTLQQI 107 (115)
T ss_dssp ESC--HHHHHHHHHHHHHH
T ss_pred eCC--HHHHHHHHHHHHHH
Confidence 888 88999999988764
No 8
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=77.41 E-value=5.4 Score=34.50 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=56.7
Q ss_pred CCCeeEEEecCceeEEeCCCC-ceEEEecCCcceeEEEEec-CcceEEEEEeCCcEEEE--cC--CChhhHHHHHHHHHh
Q 009912 18 TNPGQLKIYSGKISWKKLGGG-KAVEVDKVDIAGVTWMKVP-RTNQLGVRTKDGLYYKF--TG--FRDQDVATLTNFFQS 91 (522)
Q Consensus 18 ~~~G~lk~~~~gl~wK~~~~g-~~~~i~~~di~~~~w~r~~-~~~~Lri~~k~~~~~~f--dG--F~~~d~~~l~~~~~~ 91 (522)
+..|.|-|+++-+.|.+..++ -.++++-++|...+-+.-+ -..+|+|.++++.-|.| .. =...|-+.++..++.
T Consensus 19 K~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~~F~Ftn~~~a~~erd~VKd~L~~ 98 (108)
T 1pfj_A 19 KQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQ 98 (108)
T ss_dssp SCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEEEEECCCSSCTTHHHHHHHHHHHH
T ss_pred cCCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEEeCCCceEEEEcCcHHHHHHHHHHHHHHHH
Confidence 466999999999999995544 4577789999998877754 89999999998865554 33 134567777777665
Q ss_pred h
Q 009912 92 N 92 (522)
Q Consensus 92 ~ 92 (522)
.
T Consensus 99 ~ 99 (108)
T 1pfj_A 99 L 99 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=62.51 E-value=49 Score=30.14 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=64.9
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcC--C-----CCceeeeeeeeee-----------
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFG--I-----SPEEKQLSVSGRN----------- 108 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~--~-----~l~~~e~s~~GwN----------- 108 (522)
++-.+.|.+-++.+.|||++-.. +|..-+|-+.++..+...++ . .-+.=|+|..|..
T Consensus 27 eLvdve~~~~g~~~~LrV~ID~~-----~gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSPGldRpL~~~~df~r 101 (164)
T 1ib8_A 27 ELVDIEYGKIGSDMILSIFVDKP-----EGITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAG 101 (164)
T ss_dssp EEEEEEEEEETTEEEEEEEEECS-----SCCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECCSSSSCCSSHHHHHH
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCCHHHHHHHHHHHHHHhccccccCCCCCeEEEEeCCCCCCCCCCHHHHHH
Confidence 56678888888999999998543 58999999999999999999 5 2334455555421
Q ss_pred -------------------e-eeeE-ecCceEEEEeCC---EeEEEEeccccccccc
Q 009912 109 -------------------W-GEVD-LNGNMLTFMVGQ---KQAFEVSLADVSQTQL 141 (522)
Q Consensus 109 -------------------w-G~~~-~~~~~l~f~v~~---k~~feip~~~is~~~~ 141 (522)
| |.+. +++..+.+.+.+ .....||+++|+.+++
T Consensus 102 ~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~v~l~~~~k~~~~~~~i~~~~I~ka~l 158 (164)
T 1ib8_A 102 AVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKKTVQIPYSLVSKARL 158 (164)
T ss_dssp HCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSSCEEEEEECSSCCSSCEE
T ss_pred hCCcEEEEEEecccCCceEEEEEEEEEeCCEEEEEEecccCCeEEEEEHHHCcEEEE
Confidence 1 3332 566677777654 3457889888888776
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=56.84 E-value=29 Score=29.88 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=53.7
Q ss_pred eeccCceeEEEeccCceeecc--c--CCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCce--EEEeee--chhhh
Q 009912 353 SSLKAEDGVLYPLEKSFFFLP--K--PPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQE--HLFRNI--QRNEY 424 (522)
Q Consensus 353 Cs~Ka~~G~LypLe~~~lfl~--K--Pp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~--~~Fs~I--~reE~ 424 (522)
+.||-.+|.||.....+.|.+ + |++-+++++|..- |+...+ .----|.|.++++.. ++|++= .+.|.
T Consensus 15 v~yKK~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~q---q~SP~~--k~KVqLqi~l~~~~~~~F~Ftn~~~a~~er 89 (108)
T 1pfj_A 15 VRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQ---KISPEG--KAKIQLQLVLHAGDTTNFHFSNESTAVKER 89 (108)
T ss_dssp CBCSSCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCE---EECCSS--SSSCEEEEECSSSCEEEEECCCSSCTTHHH
T ss_pred heeecCCceEEEEcceEEEccCCCCCceEEEehhhhhcc---eeCCCC--CccEEEEEEEeCCCceEEEEcCcHHHHHHH
Confidence 578888999999999999976 3 3345689999874 444433 233567888888754 456663 36788
Q ss_pred hhHHHHHhc
Q 009912 425 HNLFDFISG 433 (522)
Q Consensus 425 ~~L~~fl~~ 433 (522)
+.+++-|..
T Consensus 90 d~VKd~L~~ 98 (108)
T 1pfj_A 90 DAVKDLLQQ 98 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876653
No 11
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=47.02 E-value=89 Score=28.89 Aligned_cols=93 Identities=10% Similarity=0.254 Sum_probs=57.9
Q ss_pred eeeeeeeee--eeeeEecCceEEEEeCCEeEEEEeccccccccccCC------CeEEEEEecCCC-----------CCCC
Q 009912 100 KQLSVSGRN--WGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGK------NDVILEFHVDDT-----------TGAN 160 (522)
Q Consensus 100 ~e~s~~GwN--wG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~K------nEv~lef~~~~~-----------~~~~ 160 (522)
.++.+.+++ =|++-+....|.+.-+.+..|.|||..|+==.++.- .=|-+++..... ..+.
T Consensus 32 v~~vl~~~~~g~GtLyVt~~~l~W~~~~~~G~sI~YpsIsLHAIsrd~~~~p~~clY~Qld~~~~~~~~~~~~e~~~~Dd 111 (171)
T 1zyi_A 32 TEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPTISLHAVSRDLNAYPREHLYVMVNAKFGEESKESVAEEEDSDD 111 (171)
T ss_dssp EEEEBTTBCCCEEEEEEETTEEEEEETTTEEEEESSCCCSEEECCSSCSSCCSCCEEEEEECCCCSSCSSSCCCSCCSSC
T ss_pred EEEEECCCccCceEEEEEcCEEEEEcCCCcEEEeecCeEEEEEEecCCCCCCCceEEEEEecccCccccccccccccccc
Confidence 344444444 378889999998877778999999999986555222 123344432110 0111
Q ss_pred CCCceeEEEEEeCCCCCccCCCCCCChHHHHHHHHHhhcccc
Q 009912 161 EKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVG 202 (522)
Q Consensus 161 ~~d~L~EmRf~iP~~~~~~~~~~~~~~a~~f~~~i~~ka~i~ 202 (522)
..+.++||||. |. +.+.++.+++++-.-+.+.
T Consensus 112 e~~~~~Eirlv-P~---------d~s~l~~if~Ams~Cq~Lh 143 (171)
T 1zyi_A 112 DVEPIAEFRFV-PS---------DKSALEAMFTAMCECQALH 143 (171)
T ss_dssp CSCSEEEEEEE-ES---------CHHHHHHHHHHHHHHHHC-
T ss_pred cccceeEEEEe-CC---------CccHHHHHHHHHHHHHHcC
Confidence 23569999997 43 2356788888887776654
No 12
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=43.99 E-value=79 Score=27.49 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=54.2
Q ss_pred EeeccCceeEEEeccC----ceeeccc---CCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEec--------C-----
Q 009912 352 KSSLKAEDGVLYPLEK----SFFFLPK---PPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKT--------E----- 411 (522)
Q Consensus 352 kCs~Ka~~G~LypLe~----~~lfl~K---Pp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~--------g----- 411 (522)
.|+||-.+|.|...++ .|.|.+. |++-|+++.|....=+..+ +---=|.|..|. +
T Consensus 6 aa~yKKk~G~lti~eD~~p~~l~W~p~~g~~~isI~l~~It~LQqTp~t-----s~KvmLKI~~k~~~~~~~~~~~~~~~ 80 (115)
T 1y5o_A 6 AAIFEKVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPAS-----SEKMMLRLIGKVDESKKRKDNEGNEV 80 (115)
T ss_dssp EEESSSCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECCTT-----CSSEEEEEEECSCCSSSCCCCSSCCS
T ss_pred eeEEEecccEEEEccCCCcceEEEEECCCCccEEEEhhhhhhhhcCCCC-----CCceEEEEEEeccccccccCCCcCCC
Confidence 5999999999999999 8888652 4577999999985544432 223445565562 2
Q ss_pred ------ceEEEeeechhhhhhHHHHHhc
Q 009912 412 ------QEHLFRNIQRNEYHNLFDFISG 433 (522)
Q Consensus 412 ------~~~~Fs~I~reE~~~L~~fl~~ 433 (522)
-.+.|+| |.|.++|++.|+.
T Consensus 81 ~~~p~~~~F~Ftn--R~~~d~IKd~Lq~ 106 (115)
T 1y5o_A 81 VPKPQRHMFSFNN--RTVMDNIKMTLQQ 106 (115)
T ss_dssp SCCCEEEEEEESC--HHHHHHHHHHHHH
T ss_pred CCCcceEEEEeCC--HHHHHHHHHHHHH
Confidence 1345666 9999999999875
No 13
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=43.98 E-value=1.1e+02 Score=27.03 Aligned_cols=79 Identities=6% Similarity=0.023 Sum_probs=48.5
Q ss_pred eEeeccCceeEEEeccCceeecccC-------C-EEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCc-eEEEeeech
Q 009912 351 VKSSLKAEDGVLYPLEKSFFFLPKP-------P-TLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQR 421 (522)
Q Consensus 351 VkCs~Ka~~G~LypLe~~~lfl~KP-------p-~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~-~~~Fs~I~r 421 (522)
|.+.+|......-++++.+|++-|. - .-|||..|.+++++-.|. . -....|.|.+.+.. ++.|.=--.
T Consensus 34 I~~ayk~iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~--f-DlDaElki~isg~~~pi~~~f~k~ 110 (126)
T 3hsa_A 34 LQLAYXMVRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGT--F-DMDAELXLWISGQHEPLVXELXRG 110 (126)
T ss_dssp EEEEEECSSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEEST--T-SCEEEEEEEETTCSSCEEEEECTT
T ss_pred EEEEehhcCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEecccc--c-cCCceEEEEEcCCceEEEEeccCc
Confidence 4466777788999999999997543 2 369999999999997441 0 12233555554432 344433333
Q ss_pred hhhhhHHHHHh
Q 009912 422 NEYHNLFDFIS 432 (522)
Q Consensus 422 eE~~~L~~fl~ 432 (522)
.+...|...|.
T Consensus 111 ~di~~i~k~La 121 (126)
T 3hsa_A 111 TDVVGIQXTIA 121 (126)
T ss_dssp SCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 34444444443
No 14
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=41.01 E-value=6.8 Score=38.74 Aligned_cols=11 Identities=9% Similarity=0.301 Sum_probs=7.0
Q ss_pred eeEEEEEEEec
Q 009912 400 HYFDLLIRLKT 410 (522)
Q Consensus 400 rTFDl~v~~K~ 410 (522)
+.|-|+++++.
T Consensus 101 ~gf~i~F~F~~ 111 (264)
T 2zd7_A 101 RDFSITFHFHG 111 (264)
T ss_dssp TCEEEEEEECC
T ss_pred CceEEEEEeCC
Confidence 55666666654
No 15
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=39.46 E-value=2.3e+02 Score=26.03 Aligned_cols=91 Identities=8% Similarity=0.130 Sum_probs=64.0
Q ss_pred hHHHHHHHHHhhcCCCCceeeeeeeeeeeeeeEecCce--EEEEeCCEeEEEEecccccc-ccccCCCeEEEEEecCCCC
Q 009912 81 DVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNM--LTFMVGQKQAFEVSLADVSQ-TQLQGKNDVILEFHVDDTT 157 (522)
Q Consensus 81 d~~~l~~~~~~~~~~~l~~~e~s~~GwNwG~~~~~~~~--l~f~v~~k~~feip~~~is~-~~~~~KnEv~lef~~~~~~ 157 (522)
-+++.|+|+.+... +++.=++++.+.+|..+...+.. +.+.|.|---|.||+..|+= +.+.|+.=++-+..+.-+-
T Consensus 27 ~~~~~k~f~~~ki~-~~~~PeV~v~~v~~~~~~l~~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tI 105 (174)
T 1yyc_A 27 LLDKAKGFFAEKLA-NIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSL 105 (174)
T ss_dssp HHHHHHHHHHHTTT-TSCCCEEEEEEEEEEEECSSSEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBC
T ss_pred HHHHhhhhHHHhhc-CCCCCEEEEEEeEEeccccceEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceE
Confidence 46788899877654 26888999999999999999885 45678888889999998886 3444553333343332221
Q ss_pred CCCCCCceeEEEEEeC
Q 009912 158 GANEKDSLMEISFHIP 173 (522)
Q Consensus 158 ~~~~~d~L~EmRf~iP 173 (522)
...+...+++.+.+|
T Consensus 106 -pa~g~~~v~Vpv~v~ 120 (174)
T 1yyc_A 106 -VGSGTTVLDVPVKVA 120 (174)
T ss_dssp -CSSEEEEEEEEEEES
T ss_pred -CCCCcEEEEEEEEEE
Confidence 234567788888886
No 16
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=36.30 E-value=2.2e+02 Score=26.81 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=42.9
Q ss_pred eeeccCCcccCCC--------CceeEeeccCceeEEEeccCceeecc------cCCE--EEEcC--ceEEEEEEEe
Q 009912 335 KITKPGKFRSAQD--------GYAVKSSLKAEDGVLYPLEKSFFFLP------KPPT--LILHE--EIDYVEFERH 392 (522)
Q Consensus 335 ki~~P~~F~s~~g--------~~~VkCs~Ka~~G~LypLe~~~lfl~------KPp~--~I~~~--eI~~V~f~Rv 392 (522)
+|+.|..|....- .--|-+.+|...-..-++++.||++- |-.. -|||. .|..|+++-.
T Consensus 6 ~ii~p~D~dk~di~~~Ll~EdgE~I~~ayk~irD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETA 81 (193)
T 3b77_A 6 QVIHPDDFDKAAADDYVLHEDGEKIYFLIKSKTDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETA 81 (193)
T ss_dssp EECCGGGSTTSGGGGGSCGGGTCCEEEEEECSSEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECC
T ss_pred cccChhhCChhhhhhhccCCCCCEEeeeeeecceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEec
Confidence 5677887775421 12366788888889999999999964 3333 39999 9999999853
No 17
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=34.08 E-value=65 Score=25.64 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=37.6
Q ss_pred cceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 009912 59 TNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 59 ~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
+.+|.|...+|..+.++=-...-+..|+..+.+.+++..+...|..+|
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G 48 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 48 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECC
Confidence 356777777888888876677779999999999999988777666544
No 18
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=32.12 E-value=13 Score=37.13 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=28.0
Q ss_pred eCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeeeeee
Q 009912 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWG 110 (522)
Q Consensus 67 k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~GwNwG 110 (522)
-.|.-.++.++...+...|.+.++..-.+ +.+.+.|.+.+
T Consensus 6 ~~~~~L~~~~l~~~~~~~l~~~l~~~~~L----~~L~L~~n~i~ 45 (386)
T 2ca6_A 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSV----KEIVLSGNTIG 45 (386)
T ss_dssp CTTCCCEESSCCSHHHHTTSHHHHHCSCC----CEEECTTSEEC
T ss_pred ecCcccccCCCCHHHHHHHHHHHhcCCCc----cEEECCCCCCC
Confidence 35677888999999999999988876443 34555544433
No 19
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=30.04 E-value=65 Score=25.35 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=37.1
Q ss_pred cceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 009912 59 TNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 59 ~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
..++.|.+-+|..+.++=-...-+..||+.+...+++..+...|..+|
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G 52 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG 52 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 346666666787777776667779999999999999988887776544
No 20
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=29.41 E-value=67 Score=25.17 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=39.7
Q ss_pred EecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeee
Q 009912 55 KVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGR 107 (522)
Q Consensus 55 r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~Gw 107 (522)
+.+...++.|...+|..+.++=-...-...||+.+....++..+...|..+|+
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk 65 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGR 65 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCE
Confidence 33455677777767877777655667799999999999999988887776553
No 21
>2ehp_A AQ_1627 protein; putative protein, NPPSFA, national project protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eiu_A
Probab=27.93 E-value=88 Score=26.86 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=36.2
Q ss_pred EecCcceEEEEEeCC--cEEEEcCCChhhHHHHHHHHHhhcCCCCc
Q 009912 55 KVPRTNQLGVRTKDG--LYYKFTGFRDQDVATLTNFFQSNFGISPE 98 (522)
Q Consensus 55 r~~~~~~Lri~~k~~--~~~~fdGF~~~d~~~l~~~~~~~~~~~l~ 98 (522)
++..+-+.++.+|.| .+..|.|.++.|+.+|...+-..|++.-.
T Consensus 71 ~vgeg~e~~lflk~GeidvL~F~gL~e~D~kKLEsILFgRyniPrK 116 (126)
T 2ehp_A 71 NVGKGGDIKLFLQKGEIYVLEFQPLSETDIKKLESILFGRAPIPKK 116 (126)
T ss_dssp EESSCCSEEEEEECSSSEEEEEESCCHHHHHHHHHHHTSSSCCCCC
T ss_pred EeecCCceeEEEeeCcEEEEEEcCCChhhHHHHHHHhhccCCCCcc
Confidence 345566777888877 58899999999999999999999988643
No 22
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=27.63 E-value=94 Score=25.13 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=38.5
Q ss_pred CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 009912 58 RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 58 ~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
+..+|.|..-+|..+.+.=-...-+..||+.+...+++..+...|..+|
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 69 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 69 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECC
Confidence 4567777777888888876666779999999999999988877766554
No 23
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=26.30 E-value=18 Score=35.92 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=11.0
Q ss_pred echhhhhhHHHHH-hc-CCcEEEeC
Q 009912 419 IQRNEYHNLFDFI-SG-KGLKIMNL 441 (522)
Q Consensus 419 I~reE~~~L~~fl-~~-k~i~i~n~ 441 (522)
|...-...|-.++ .. ..|+.-+.
T Consensus 286 i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 286 IELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEc
Confidence 3333344455555 22 55665554
No 24
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=24.86 E-value=29 Score=22.43 Aligned_cols=8 Identities=25% Similarity=0.144 Sum_probs=5.6
Q ss_pred ccCCCCCC
Q 009912 515 QRITKSSV 522 (522)
Q Consensus 515 ~~~~k~~~ 522 (522)
.||||+||
T Consensus 16 PPKkKrk~ 23 (26)
T 1q1s_A 16 PPKKKRKV 23 (26)
T ss_pred CCcccccc
Confidence 57777765
No 25
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=24.83 E-value=1.1e+02 Score=24.09 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=36.7
Q ss_pred eEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 009912 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 61 ~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
++.|.+-+|..+.++=-..+-...|++.+....++..+...|..+|
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 47 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG 47 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECC
Confidence 5666666888888877777789999999999999988877765544
No 26
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=24.29 E-value=1.8e+02 Score=26.14 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=43.6
Q ss_pred EEEecC-CcceeEEEEe-cCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCC
Q 009912 41 VEVDKV-DIAGVTWMKV-PRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGIS 96 (522)
Q Consensus 41 ~~i~~~-di~~~~w~r~-~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~ 96 (522)
.++.=+ .|+++...-- .+-..|.+-++|+.++.+|.-...|.++|+.|+..-.--.
T Consensus 65 ktFQL~nNIksVvlr~~g~~qn~LhLTlknn~fLfIdKLs~~DaeqLK~FLd~v~Qnk 122 (141)
T 3u12_A 65 RIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFLSIDKVPSKDAEEMRLFLDAVHQNR 122 (141)
T ss_dssp EEEECTTTEEEEEEEECSTTEEEEEEEETTCCEEEEEEEEHHHHHHHHHHHHHHHTTC
T ss_pred EEEEcccceeeEEEecCCCccceEEEEEecCcEEEEecCCHHHHHHHHHHHHHhcccC
Confidence 444433 6777766553 4666899999999999999999999999999998865433
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=24.16 E-value=1e+02 Score=23.52 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=36.6
Q ss_pred ceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 009912 60 NQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 60 ~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
.++.|...+|..+.++=-...-+..|++.+.+.+++..+...|..+|
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g 50 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 50 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETB
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 45666666777777776677789999999999999988877666654
No 28
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=23.80 E-value=1e+02 Score=24.44 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=37.2
Q ss_pred CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 009912 58 RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 58 ~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
...++.|.+-+|..+.+.=-...-+..||+.+.+..++..+...|..+|
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G 64 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 64 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECC
Confidence 4456666656777777765567779999999999999988877766654
No 29
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=23.34 E-value=1.1e+02 Score=23.22 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=37.3
Q ss_pred cceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 009912 59 TNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 59 ~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
..++.|...+|..+.++=-...-...||+.+....++..+...|..+|
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G 51 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG 51 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECC
Confidence 356666666787777766667789999999999999998877776544
No 30
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=23.21 E-value=1.4e+02 Score=22.12 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=34.2
Q ss_pred eEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 009912 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 61 ~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
+++|...+|..+.+.==...-...|++.+.+..++..+...+..+|
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g 47 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECC
Confidence 4666666777777764455669999999999999887777666554
No 31
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.57 E-value=1.5e+02 Score=22.31 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=35.1
Q ss_pred CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 009912 58 RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 58 ~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
...+|+|...+|..+.++==...-+..|++.+.+..++..+...|..+|
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~g 54 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKG 54 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETT
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECC
Confidence 4456666666676666654455679999999999999887777666543
Done!