Query 009912
Match_columns 522
No_of_seqs 196 out of 395
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 15:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009912.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009912hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gcla1 b.55.1.10 (A:237-474) 100.0 4.8E-74 3.5E-78 565.6 25.7 237 204-440 1-238 (238)
2 d2gcla1 b.55.1.10 (A:237-474) 94.8 0.027 1.9E-06 52.9 7.6 75 18-96 154-235 (238)
3 d2rnrb1 b.55.1.9 (B:1-108) TFI 94.4 0.039 2.9E-06 45.9 6.7 75 17-91 18-98 (108)
4 d1wkya1 b.18.1.31 (A:340-490) 89.2 0.21 1.6E-05 42.6 5.1 69 47-156 68-136 (151)
5 d1t77a2 b.55.1.6 (A:2076-2185) 79.5 4.6 0.00034 32.6 9.0 77 355-436 15-110 (110)
6 d2rnrb1 b.55.1.9 (B:1-108) TFI 79.1 5 0.00037 32.6 9.1 77 352-433 14-98 (108)
7 d1y5oa1 b.55.1.9 (A:2-115) RNA 71.7 13 0.00094 30.3 9.6 73 18-92 10-106 (114)
8 d1t77a2 b.55.1.6 (A:2076-2185) 64.0 8.2 0.0006 31.0 6.9 70 17-87 16-103 (110)
9 d1zsqa1 b.55.1.8 (A:74-198) My 36.9 57 0.0041 26.1 8.0 76 356-433 26-108 (125)
10 d1ib8a1 b.38.2.1 (A:91-164) Hy 36.3 9.8 0.00071 28.1 2.7 29 113-141 37-68 (74)
11 d1z2ma1 d.15.1.1 (A:3-78) Inte 31.6 37 0.0027 24.7 5.4 45 60-104 1-45 (76)
12 d1ttna1 d.15.1.1 (A:21-100) De 29.6 40 0.0029 24.7 5.3 49 59-107 3-51 (80)
13 d1h4ra2 b.55.1.5 (A:215-313) M 22.8 40 0.0029 25.7 4.2 45 375-427 38-82 (99)
14 d1oq1a_ b.29.1.17 (A:) Hypothe 20.8 96 0.007 25.9 6.9 49 105-153 158-206 (223)
15 d2faza1 d.15.1.1 (A:1-76) Ubiq 20.3 59 0.0043 23.6 4.6 46 61-106 2-49 (76)
No 1
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=4.8e-74 Score=565.58 Aligned_cols=237 Identities=35% Similarity=0.671 Sum_probs=225.7
Q ss_pred CCCcceEEEcCeeEEcCCcceEEEEeeccEEEecccceeEeeccceeEEEeeecCCCCeEEEEEecCCCccCCCccCceE
Q 009912 204 GGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHI 283 (522)
Q Consensus 204 ~~g~~i~~f~dI~~ltPRGRydie~~~~~lrl~gkt~dykI~y~~I~r~FlLP~pd~~~~~~vi~Ld~PirqGqTky~~l 283 (522)
++|++||+|+||+|+||||||+|+||.++|||||++|||+|+|+||+|+|+||+|+++|+++||+|+||||||||+|+|+
T Consensus 1 ~~g~~i~~~~dv~~~~PRgk~~i~~~~~~lrl~g~~~d~~I~~~~I~~~f~lP~p~~~~~~~~~~L~ppi~~G~t~y~~~ 80 (238)
T d2gcla1 1 VAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPFL 80 (238)
T ss_dssp CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEeCceEEcCCCceEEEEecCeEEEECCccceEEEhhheeEEEEccCCCCceEEEEEEecChhhcCCccCceE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccceeeeeccCCHHHHhhHhhcccccccccchHHHHHHHHhhhcCCeeeccCCcccCCCCceeEeeccCceeEEE
Q 009912 284 VLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLY 363 (522)
Q Consensus 284 v~QF~~e~~~~~elnl~eeel~ek~~~kL~~~~~g~~~ev~~~i~k~l~~~ki~~P~~F~s~~g~~~VkCs~Ka~~G~Ly 363 (522)
||||+++++++++||+++++++++|.++|+++|+|+++++++++|+++++++++.|+.|.++.|++||+|++|+++|+||
T Consensus 81 v~qf~~~e~~~~~l~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~k~l~~~kv~~p~~f~~~~~~~~v~~~~~~~~G~L~ 160 (238)
T d2gcla1 81 VLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLY 160 (238)
T ss_dssp EEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCTTSCSCEEEEETTEEEEEE
T ss_pred EEEEccCCCcEEEecCChHHHhhhhcchhhhhhcchHHHHHHHHHHHHhCcEecCCccccCCCCcceEEEeeccccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCceeecccCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecC-ceEEEeeechhhhhhHHHHHhcCCcEEEe
Q 009912 364 PLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE-QEHLFRNIQRNEYHNLFDFISGKGLKIMN 440 (522)
Q Consensus 364 pLe~~~lfl~KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g-~~~~Fs~I~reE~~~L~~fl~~k~i~i~n 440 (522)
||++||||++|||+||+++||++|+|+|+|+|+.++|||||+|++|++ ++++|+||||+||++|++||++|+|+|+|
T Consensus 161 pl~~~llf~~KP~~~i~~~eI~~V~f~Rv~~~~~~~rtFD~~v~~k~~~~~~~fs~I~~~e~~~i~~~l~~~~ikikn 238 (238)
T d2gcla1 161 PLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKN 238 (238)
T ss_dssp ECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGHHHHHHHHHHTTCCEEC
T ss_pred EccCeEEEecCCcEEEEehhEeEEEEEeecCCccccceeeEEEEEeCCCccEEEeccCHHHHHHHHHHHHHCCCcccC
Confidence 999999999999999999999999999998876667999999999998 48999999999999999999999999998
No 2
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.83 E-value=0.027 Score=52.91 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=64.2
Q ss_pred CCCeeEEEecCceeEEeCCCCceEEEecCCcceeEEEEe------cCcceEEEEEeCCc-EEEEcCCChhhHHHHHHHHH
Q 009912 18 TNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKV------PRTNQLGVRTKDGL-YYKFTGFRDQDVATLTNFFQ 90 (522)
Q Consensus 18 ~~~G~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~------~~~~~Lri~~k~~~-~~~fdGF~~~d~~~l~~~~~ 90 (522)
...|-|-..+.||.|= .+ -++.|+-+||..++..|+ .|.+.|.|.+|+|. .+.|.+...++++.|.+|++
T Consensus 154 ~~~G~L~pl~~~llf~-~K--P~~~i~~~eI~~V~f~Rv~~~~~~~rtFD~~v~~k~~~~~~~fs~I~~~e~~~i~~~l~ 230 (238)
T d2gcla1 154 ANEGYLYPLDNAFFFL-TK--PTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLK 230 (238)
T ss_dssp TEEEEEEECSSEEEEE-SS--SCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGHHHHHHHHH
T ss_pred cccEEEEEccCeEEEe-cC--CcEEEEehhEeEEEEEeecCCccccceeeEEEEEeCCCccEEEeccCHHHHHHHHHHHH
Confidence 4679999999999994 32 568999999999999997 27899999999884 89999999999999999999
Q ss_pred hhcCCC
Q 009912 91 SNFGIS 96 (522)
Q Consensus 91 ~~~~~~ 96 (522)
+. ++.
T Consensus 231 ~~-~ik 235 (238)
T d2gcla1 231 SK-NLR 235 (238)
T ss_dssp HT-TCC
T ss_pred HC-CCc
Confidence 86 444
No 3
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.39 E-value=0.039 Score=45.87 Aligned_cols=75 Identities=16% Similarity=0.258 Sum_probs=58.0
Q ss_pred CCCCeeEEEecCceeEEeCCCCc-eEEEecCCcceeEEEEec-CcceEEEEEeCCc--EEEEcCCCh--hhHHHHHHHHH
Q 009912 17 GTNPGQLKIYSGKISWKKLGGGK-AVEVDKVDIAGVTWMKVP-RTNQLGVRTKDGL--YYKFTGFRD--QDVATLTNFFQ 90 (522)
Q Consensus 17 ~~~~G~lk~~~~gl~wK~~~~g~-~~~i~~~di~~~~w~r~~-~~~~Lri~~k~~~--~~~fdGF~~--~d~~~l~~~~~ 90 (522)
-+.+|.|.|+++.|.|++.+++. .+++.-.+|...+-+.-+ ...+|+|.++++. ++.|..-.. .|-+.++..|+
T Consensus 18 KK~~GtL~l~~d~l~W~p~~~~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~~s~~F~Ftn~~~~~~~Rd~iK~~Lq 97 (108)
T d2rnrb1 18 KKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQ 97 (108)
T ss_dssp SSCEEEEEECSSEEEEEESSCSSCSEEEETTTEEEEEECCTTCSSEEEEEEETTSCEEEEEECCTTTHHHHHHHHHHHHH
T ss_pred ecCCcEEEEEcCeEEEEcCCCCCceEEEEhhhhhceecCCCCcccceeEEEEeCCCeEEEEECChHHHHHHHHHHHHHHH
Confidence 46889999999999999987666 489999999999988865 8899999999885 555655332 23366666555
Q ss_pred h
Q 009912 91 S 91 (522)
Q Consensus 91 ~ 91 (522)
+
T Consensus 98 ~ 98 (108)
T d2rnrb1 98 Q 98 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>d1wkya1 b.18.1.31 (A:340-490) Endo-beta-1,4-mannanase C-terminal domain {Bacillus sp. JAMB-602 [TaxId: 244966]}
Probab=89.16 E-value=0.21 Score=42.56 Aligned_cols=69 Identities=14% Similarity=0.338 Sum_probs=49.5
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeeeeeeeeEecCceEEEEeCCE
Q 009912 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126 (522)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~GwNwG~~~~~~~~l~f~v~~k 126 (522)
-++++.|-.++.|..-|+++|.| .||+|= ++....|+-.+-
T Consensus 68 ~v~hanWGnvGsGm~AklyvKtG-----------------------------------s~w~Wy----~g~~~~i~~~~~ 108 (151)
T d1wkya1 68 TVKHANWGSVGNGMTARLYVKTG-----------------------------------HGYTWY----SGSFVPINGSSG 108 (151)
T ss_dssp EEEEC-------CEEEEEEEEET-----------------------------------TTTEEE----ECCCEEECSSSC
T ss_pred EEEecccCCCCCCeeEEEEEEeC-----------------------------------Ccceec----cCCeEEEcCCCc
Confidence 36789999999999999999988 478884 356666776778
Q ss_pred eEEEEeccccccccccCCCeEEEEEecCCC
Q 009912 127 QAFEVSLADVSQTQLQGKNDVILEFHVDDT 156 (522)
Q Consensus 127 ~~feip~~~is~~~~~~KnEv~lef~~~~~ 156 (522)
++..|.|+.|+|.+. -+|+-+||.-.+.
T Consensus 109 T~Lsl~Ls~v~nl~~--VrEiGVef~a~~n 136 (151)
T d1wkya1 109 TTLSLDLSNVQNLSQ--VREIGVQFQSESN 136 (151)
T ss_dssp EEEEEECTTCSCGGG--EEEEEEEEEECTT
T ss_pred eEEEEEecCCCchhh--hheeeeEEeccCC
Confidence 899999999999875 7899999975443
No 5
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.46 E-value=4.6 Score=32.64 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=63.9
Q ss_pred ccCceeEEEeccCceeecc-------------------cCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCceEE
Q 009912 355 LKAEDGVLYPLEKSFFFLP-------------------KPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHL 415 (522)
Q Consensus 355 ~Ka~~G~LypLe~~~lfl~-------------------KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~~~ 415 (522)
.+...|.|.-+++++.|.. ++..-+++++|..|..-|.- .|.=-++|.+.+|..+-
T Consensus 15 ~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~l-----l~~~alEif~~~~~s~~ 89 (110)
T d1t77a2 15 SVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYL-----LQNTALEIFMANRVAVM 89 (110)
T ss_dssp SCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEET-----TEEEEEEEEETTSCEEE
T ss_pred cceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhc-----CCceEEEEEEcCCcEEE
Confidence 3446899999999999853 24457999999999998864 58889999999999888
Q ss_pred EeeechhhhhhHHHHHhcCCc
Q 009912 416 FRNIQRNEYHNLFDFISGKGL 436 (522)
Q Consensus 416 Fs~I~reE~~~L~~fl~~k~i 436 (522)
|+=-+++..+.+.++|.+-||
T Consensus 90 ~~F~~~~~~~~v~~~l~~v~~ 110 (110)
T d1t77a2 90 FNFPDPATVKKVVNFLPRVGV 110 (110)
T ss_dssp EECSSHHHHHHHHHHSCSCTT
T ss_pred EEeCCHHHHHHHHHhccccCC
Confidence 887788999999999987765
No 6
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.10 E-value=5 Score=32.59 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=54.2
Q ss_pred EeeccCceeEEEeccCceeecc----cCCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCceEE--Eee--echhh
Q 009912 352 KSSLKAEDGVLYPLEKSFFFLP----KPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHL--FRN--IQRNE 423 (522)
Q Consensus 352 kCs~Ka~~G~LypLe~~~lfl~----KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~~~--Fs~--I~reE 423 (522)
+..||-.+|.||..+..|.|.+ .|++-+.|.+|..--.+= .++ .+ --|.|.++++..|. |+| --+.|
T Consensus 14 ~v~yKK~~GtL~l~~d~l~W~p~~~~~~~v~~~~~~I~~~q~Sp---e~s-~K-v~Lkiv~~~~~s~~F~Ftn~~~~~~~ 88 (108)
T d2rnrb1 14 KVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISP---EGK-AK-IQLQLVLHAGDTTNFHFSNESTAVKE 88 (108)
T ss_dssp EEEESSCEEEEEECSSEEEEEESSCSSCSEEEETTTEEEEEECC---TTC-SS-EEEEEEETTSCEEEEEECCTTTHHHH
T ss_pred ceEEecCCcEEEEEcCeEEEEcCCCCCceEEEEhhhhhceecCC---CCc-cc-ceeEEEEeCCCeEEEEECChHHHHHH
Confidence 5678889999999999999975 366889999997766554 332 23 45888999987665 554 22334
Q ss_pred hhhHHHHHhc
Q 009912 424 YHNLFDFISG 433 (522)
Q Consensus 424 ~~~L~~fl~~ 433 (522)
.+.|++-|+.
T Consensus 89 Rd~iK~~Lq~ 98 (108)
T d2rnrb1 89 RDAVKDLLQQ 98 (108)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666665543
No 7
>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B 73 kDa, TFB1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=71.69 E-value=13 Score=30.33 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=59.3
Q ss_pred CCCeeEEEecC----ceeEEeCCCCceEEEecCCcceeEEEEe-cCcceEEEEEeCC-------------------cEEE
Q 009912 18 TNPGQLKIYSG----KISWKKLGGGKAVEVDKVDIAGVTWMKV-PRTNQLGVRTKDG-------------------LYYK 73 (522)
Q Consensus 18 ~~~G~lk~~~~----gl~wK~~~~g~~~~i~~~di~~~~w~r~-~~~~~Lri~~k~~-------------------~~~~ 73 (522)
+..|.|.|+++ .+.|++.+++++++|+=+.|...|=... +...-|||+-|-. .++.
T Consensus 10 KkdG~ltis~D~~~~~~~w~~~~g~~~vti~l~~ItnLQqTP~tspKvmLKI~~k~~~~~~~~~~~g~~~~~~p~~~~F~ 89 (114)
T d1y5oa1 10 KVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMFS 89 (114)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECCTTCSSEEEEEEECSCCSSSCCCCSSCCSSCCCEEEEEE
T ss_pred eccceEEEccCCCceEEEeccCCCCccEEEEhhhhhhhccCCCCCcceEEEEEEecCCCccccccCCCCCCCCcceEEEE
Confidence 46799999876 4899998888999999999999988876 4899999998721 2667
Q ss_pred EcCCChhhHHHHHHHHHhh
Q 009912 74 FTGFRDQDVATLTNFFQSN 92 (522)
Q Consensus 74 fdGF~~~d~~~l~~~~~~~ 92 (522)
|.. +.+.+.|+..|+..
T Consensus 90 Fn~--R~ead~IKd~L~~i 106 (114)
T d1y5oa1 90 FNN--RTVMDNIKMTLQQI 106 (114)
T ss_dssp ESC--HHHHHHHHHHHHHH
T ss_pred ecC--HHHHHHHHHHHHHH
Confidence 765 78889998888753
No 8
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.01 E-value=8.2 Score=31.03 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCCCeeEEEecCceeEEeCCC----------------CceEEEecCCcceeEEEEec-CcceEEEEEeCCcEEEEcCCCh
Q 009912 17 GTNPGQLKIYSGKISWKKLGG----------------GKAVEVDKVDIAGVTWMKVP-RTNQLGVRTKDGLYYKFTGFRD 79 (522)
Q Consensus 17 ~~~~G~lk~~~~gl~wK~~~~----------------g~~~~i~~~di~~~~w~r~~-~~~~Lri~~k~~~~~~fdGF~~ 79 (522)
...+|+|.|+...|-|-.... ++....+-++|..+.|.|.- |...|-|++.||.-+-|. |..
T Consensus 16 ~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif~~~~~s~~~~-F~~ 94 (110)
T d1t77a2 16 VVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFN-FPD 94 (110)
T ss_dssp CEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEEETTSCEEEEE-CSS
T ss_pred ceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEEEcCCcEEEEE-eCC
Confidence 346899999999999976432 35667889999999999986 999999999999877776 764
Q ss_pred -hhHHHHHH
Q 009912 80 -QDVATLTN 87 (522)
Q Consensus 80 -~d~~~l~~ 87 (522)
++.+++-+
T Consensus 95 ~~~~~~v~~ 103 (110)
T d1t77a2 95 PATVKKVVN 103 (110)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34444433
No 9
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.89 E-value=57 Score=26.15 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=51.4
Q ss_pred cCceeEEEeccCceeecc--cCC---EEEEcCceEEEEEEEecCCCc-ceeeEEEEEEEecCceEEEeeech-hhhhhHH
Q 009912 356 KAEDGVLYPLEKSFFFLP--KPP---TLILHEEIDYVEFERHAAGGS-NMHYFDLLIRLKTEQEHLFRNIQR-NEYHNLF 428 (522)
Q Consensus 356 Ka~~G~LypLe~~~lfl~--KPp---~~I~~~eI~~V~f~Rv~~~~~-~~rTFDl~v~~K~g~~~~Fs~I~r-eE~~~L~ 428 (522)
++-+|.||.+.--++|.. +++ +.||+.-|+.|+ ++++... ....+-|.|.-||...++|.=-+. ++...+.
T Consensus 26 ~~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~--k~~~~~~~~~~~~~L~I~CKDfr~~~f~f~~e~~~~~~v~ 103 (125)
T d1zsqa1 26 GAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVE--KIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIF 103 (125)
T ss_dssp EEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEE--EECCTTCCSTTCSEEEEEETTTEEEEEECCGGGCCHHHHH
T ss_pred CccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeee--ecccccccCCccccEEEEeccCeEEEEEEcCCccHHHHHH
Confidence 345899999999999973 333 468999999995 5543221 125678999999999888876433 2233344
Q ss_pred HHHhc
Q 009912 429 DFISG 433 (522)
Q Consensus 429 ~fl~~ 433 (522)
+-|..
T Consensus 104 ~~L~~ 108 (125)
T d1zsqa1 104 ENLMK 108 (125)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 10
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=36.35 E-value=9.8 Score=28.13 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=23.3
Q ss_pred EecCceEEEEeCCE---eEEEEeccccccccc
Q 009912 113 DLNGNMLTFMVGQK---QAFEVSLADVSQTQL 141 (522)
Q Consensus 113 ~~~~~~l~f~v~~k---~~feip~~~is~~~~ 141 (522)
.++++.+.+.+.++ --++||+++|+.+++
T Consensus 37 ~~~~~~i~l~~~~~~~~~~~~i~~~~I~kArL 68 (74)
T d1ib8a1 37 AFEEDELTMEYMDKTRKKTVQIPYSLVSKARL 68 (74)
T ss_dssp EEETTEEEEEEECSSCEEEEEECSSCCSSCEE
T ss_pred eecCCeEEEEEecCcccEEEEEcHHHheeEEE
Confidence 36778888887654 468999999999887
No 11
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.65 E-value=37 Score=24.70 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=37.6
Q ss_pred ceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeee
Q 009912 60 NQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSV 104 (522)
Q Consensus 60 ~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~ 104 (522)
|+|+|.+-+|..+.+.==+.+-...||..+....|+..+...|..
T Consensus 1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~ 45 (76)
T d1z2ma1 1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAV 45 (76)
T ss_dssp CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEE
Confidence 789999999988888765667799999999999999887665554
No 12
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.60 E-value=40 Score=24.66 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=38.7
Q ss_pred cceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeee
Q 009912 59 TNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGR 107 (522)
Q Consensus 59 ~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~e~s~~Gw 107 (522)
..++.|.+.+|..+.+.==..+-...||..+....++..+...|...|+
T Consensus 3 e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk 51 (80)
T d1ttna1 3 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGR 51 (80)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTE
T ss_pred eEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECce
Confidence 3566667778988888866777799999999999999887777665554
No 13
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.76 E-value=40 Score=25.73 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=33.7
Q ss_pred CCEEEEcCceEEEEEEEecCCCcceeeEEEEEEEecCceEEEeeechhhhhhH
Q 009912 375 PPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNL 427 (522)
Q Consensus 375 Pp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~v~~K~g~~~~Fs~I~reE~~~L 427 (522)
|+...+..+|..++|.| |.|-+++.-+.+..+.|..-+.+-...|
T Consensus 38 ~~~~f~W~~I~~lsf~~--------kkf~I~~~~~~~~~~~F~~~~~~~aK~l 82 (99)
T d1h4ra2 38 PKISFPWNEIRNISYSD--------KEFTIKPLDKKIDVFKFNSSKLRVNKLI 82 (99)
T ss_dssp CSEEEEGGGEEEEEEET--------TEEEEEESSTTSCCEEEECCCHHHHHHH
T ss_pred CceEEecccEEEEEecc--------eEEEEEEcCCCCceEEEEcCCHHHHHHH
Confidence 77899999999999986 8887775544456778887666544444
No 14
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]}
Probab=20.77 E-value=96 Score=25.86 Aligned_cols=49 Identities=6% Similarity=-0.040 Sum_probs=36.5
Q ss_pred eeeeeeeeEecCceEEEEeCCEeEEEEeccccccccccCCCeEEEEEec
Q 009912 105 SGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHV 153 (522)
Q Consensus 105 ~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~KnEv~lef~~ 153 (522)
.-||--++.+.|+.+...+||+++++.--..-..-....+--+.|+.|.
T Consensus 158 geWn~~~I~v~G~~i~~~lNG~~v~d~~d~~~~~g~~~~~G~iglq~~~ 206 (223)
T d1oq1a_ 158 DSPYRMKLIKDKGYVHFSINGLPILEWMDDGSTYGPVLTKGKIGFRQMA 206 (223)
T ss_dssp CSCEEEEEEEETTEEEEEETTEEEEEEECCSSSSSSCCCSBEEEEEEET
T ss_pred CCcEEEEEEEECCEEEEEECCEEEEEEECCCcccCcccCceeEEEEecC
Confidence 4599999999999999999999999874332211222356678888885
No 15
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.28 E-value=59 Score=23.60 Aligned_cols=46 Identities=26% Similarity=0.300 Sum_probs=35.8
Q ss_pred eEEEEEeCCc-EEEEcCCChhh-HHHHHHHHHhhcCCCCceeeeeeee
Q 009912 61 QLGVRTKDGL-YYKFTGFRDQD-VATLTNFFQSNFGISPEEKQLSVSG 106 (522)
Q Consensus 61 ~Lri~~k~~~-~~~fdGF~~~d-~~~l~~~~~~~~~~~l~~~e~s~~G 106 (522)
++.|.+-+|. .+.++.....+ ...||+.+....|+..+..-|...|
T Consensus 2 ~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~G 49 (76)
T d2faza1 2 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRG 49 (76)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred EEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEee
Confidence 3455555884 78888888887 8999999999999988777666544
Done!