Query 009915
Match_columns 522
No_of_seqs 276 out of 1462
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 18:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1648 Uncharacterized conser 100.0 2.2E-48 4.7E-53 398.7 8.6 419 41-515 250-698 (813)
2 PF12068 DUF3548: Domain of un 100.0 1.6E-38 3.6E-43 305.7 14.4 148 42-189 3-200 (213)
3 KOG2224 Uncharacterized conser 100.0 1.8E-36 3.9E-41 307.2 22.6 193 328-522 404-626 (781)
4 KOG2058 Ypt/Rab GTPase activat 100.0 1.3E-28 2.8E-33 258.1 15.0 169 331-521 123-300 (436)
5 smart00164 TBC Domain in Tre-2 100.0 1E-27 2.2E-32 230.0 14.4 147 356-521 2-149 (199)
6 KOG2197 Ypt/Rab-specific GTPas 99.9 5.5E-29 1.2E-33 267.7 5.5 197 324-521 143-339 (488)
7 COG5210 GTPase-activating prot 99.9 1.8E-24 3.8E-29 235.8 13.3 177 327-521 179-360 (496)
8 KOG4567 GTPase-activating prot 99.9 7.2E-24 1.6E-28 209.4 10.6 182 335-519 13-259 (370)
9 KOG1092 Ypt/Rab-specific GTPas 99.9 9.8E-22 2.1E-26 201.0 8.4 169 344-521 175-368 (484)
10 KOG2223 Uncharacterized conser 99.8 1.5E-20 3.3E-25 192.2 12.5 169 340-519 284-455 (586)
11 PF00566 RabGAP-TBC: Rab-GTPas 99.8 5.9E-20 1.3E-24 177.2 11.9 145 361-520 1-146 (214)
12 KOG2222 Uncharacterized conser 99.8 1.2E-19 2.6E-24 186.9 11.0 163 333-519 148-312 (848)
13 KOG4347 GTPase-activating prot 99.7 1.5E-17 3.2E-22 178.3 11.8 165 332-520 174-342 (671)
14 KOG2221 PDZ-domain interacting 99.7 2E-17 4.3E-22 156.7 4.9 164 332-519 76-242 (267)
15 KOG4436 Predicted GTPase activ 99.6 4.9E-16 1.1E-20 169.1 7.3 168 332-519 550-722 (948)
16 KOG1102 Rab6 GTPase activator 99.5 1.5E-13 3.3E-18 145.6 9.2 150 346-519 134-284 (397)
17 KOG1091 Ypt/Rab-specific GTPas 99.2 7.2E-12 1.6E-16 133.0 5.5 125 362-490 28-174 (625)
18 KOG1093 Predicted protein kina 99.0 1.7E-09 3.6E-14 115.3 10.2 150 342-520 340-492 (725)
19 KOG2595 Predicted GTPase activ 99.0 9.4E-10 2E-14 111.0 7.5 149 345-520 46-199 (395)
20 KOG4436 Predicted GTPase activ 98.5 2.3E-07 5E-12 102.4 9.3 160 332-516 164-332 (948)
21 KOG2197 Ypt/Rab-specific GTPas 97.8 1.3E-05 2.9E-10 87.3 4.5 84 324-407 43-126 (488)
22 KOG2224 Uncharacterized conser 97.4 7.1E-05 1.5E-09 78.0 2.6 34 462-495 566-599 (781)
23 KOG2801 Probable Rab-GAPs [Int 89.5 2.2 4.8E-05 43.2 9.3 124 346-492 31-158 (559)
24 PF08567 TFIIH_BTF_p62_N: TFII 64.6 46 0.001 27.3 7.9 65 64-142 12-78 (79)
25 PF14472 DUF4429: Domain of un 60.5 8.9 0.00019 32.5 3.0 31 104-134 27-58 (94)
26 COG1507 Uncharacterized conser 40.2 58 0.0012 30.1 5.0 31 110-141 20-53 (167)
27 KOG3636 Uncharacterized conser 35.5 83 0.0018 34.3 6.0 56 443-499 90-147 (669)
28 PF04683 Proteasom_Rpn13: Prot 30.8 2.9E+02 0.0063 22.9 7.5 55 62-126 13-68 (85)
29 PF07024 ImpE: ImpE protein; 25.1 74 0.0016 28.6 3.1 30 106-135 30-63 (123)
30 PF14844 PH_BEACH: PH domain a 25.0 72 0.0016 27.1 3.0 93 45-146 2-97 (106)
31 PF08109 Antimicrobial14: Lact 23.9 51 0.0011 21.4 1.3 15 462-476 3-17 (31)
32 PRK09039 hypothetical protein; 23.3 80 0.0017 33.3 3.5 53 463-519 18-70 (343)
33 PRK03636 hypothetical protein; 20.8 97 0.0021 29.6 3.2 62 111-174 40-101 (179)
No 1
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=100.00 E-value=2.2e-48 Score=398.75 Aligned_cols=419 Identities=21% Similarity=0.288 Sum_probs=321.2
Q ss_pred CCcEEEEeeCCeEEccCCcccccCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeee--eeCCCeeEEEEeC
Q 009915 41 EGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRRHT 118 (522)
Q Consensus 41 ~~~~llf~Ks~V~vhpt~~~~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~--v~ls~I~sI~~~~ 118 (522)
++++|||+||+|.|+|.. +++.+||||+|+|....++|+|+||+.|++..+.++.+.+.||.++ |++.+|.+||||+
T Consensus 250 sr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHcHQ 328 (813)
T KOG1648|consen 250 SRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHCHQ 328 (813)
T ss_pred chhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEeec
Confidence 678999999999999987 7999999999999999999999999999999888888999999876 9999999999999
Q ss_pred CCCCceEEEEEeCCCCcCCceEeecCCh-HHHHHHHHhcccccccCCCCceEEEeCC---chhhhhhhccccCCccc-cc
Q 009915 119 PAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDF---DNRLQRTLSSLELPRAV-SI 193 (522)
Q Consensus 119 p~~g~~~~il~~~dG~~lPpL~F~~GG~-~~fL~~L~~~~~l~rS~~d~~~~lv~~~---~~~l~~~~s~~~~~~~~-~~ 193 (522)
......+++||.+||++.|||+|+.||+ ..||+||++ +.|++.++||++|...+- -+.|++. |+....... .-
T Consensus 329 q~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKR-S~~~s~~~~~~~ 406 (813)
T KOG1648|consen 329 QDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKR-STAVSNPAMEMG 406 (813)
T ss_pred ccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhc-CcccCCchhhcC
Confidence 9877789999999999999999999999 799999988 999999999999999762 2566553 222111100 01
Q ss_pred CCCCCCCcccC-CCCCcccccccCC---------------CCCCCCCcccccccc---ccCcCCChhhhhHHHHHhhHHH
Q 009915 194 ASGSSTPVSIG-DSPTNVNLERTNG---------------GLGHDSHSISQFHGR---QKQKAQDPARDISIQVLEKFSL 254 (522)
Q Consensus 194 ~~~~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~l~~~s~ 254 (522)
...+++|+++. ++++..+....|- ...+.+.+|++..+. ...+++.++ .+.+.++
T Consensus 407 ~~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~ll----- 480 (813)
T KOG1648|consen 407 TGRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLL----- 480 (813)
T ss_pred cccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHH-----
Confidence 12356788875 5555544332221 112233445443331 122334444 3667787
Q ss_pred HHHHHHHHhhhhhhccCCCCCccchhccccccccccCcCCCccccccc---c-CCCCCCCchhhcccccccCCCCCCCCC
Q 009915 255 VTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIV---N-EIPVAPDPVEFDKLTLVWGKPRQPPLG 330 (522)
Q Consensus 255 vt~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~e~~~---~-~~~~~~~~~e~~~~~~~~~~~r~~plt 330 (522)
|.+|.+|+++++| |||..+ |+|+++|++++. + .+-.|++|. ....++|
T Consensus 481 C~sMk~QI~sRAF-----YGWLay------------cRHLsTvRTHLsaLV~h~~~~pD~pc-----------da~~glt 532 (813)
T KOG1648|consen 481 CQSMKNQIMSRAF-----YGWLAY------------CRHLSTVRTHLSALVDHKTLIPDDPC-----------DASAGLT 532 (813)
T ss_pred HHHHHHHHHHHHH-----HHHHHH------------HHHHHHHHHHHHHHhcccccCCCCCC-----------Ccccccc
Confidence 9999999999999 999654 556677777753 2 223344443 3356899
Q ss_pred HHHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHH
Q 009915 331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 410 (522)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~ 410 (522)
+.-|+.+..+. .+..-++.+...+|++....|+.+|+++++.+...+...+.+.........|++..-.|..
T Consensus 533 ~~~W~qy~~d~--t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~------ 604 (813)
T KOG1648|consen 533 EKFWKQYRADP--TIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR------ 604 (813)
T ss_pred HHHHHHHhcCC--chHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh------
Confidence 99999998542 2333455566679999999999999999999999888777666777778888887766653
Q ss_pred hhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHH
Q 009915 411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFV 490 (522)
Q Consensus 411 ~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~ 490 (522)
-..++|+||+.|++++..+|.+.+ +++. +++.++|...|-.-||.|||+||++|++..+++|...-=||.
T Consensus 605 -------~~~~~~~kd~e~~~~~~~~fs~~~--~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s 674 (813)
T KOG1648|consen 605 -------ANLHRIDKDVERCDRNLMFFSNKD--NLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFS 674 (813)
T ss_pred -------hheeeecchhhhCcchheeecCCc--chhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCc
Confidence 234799999999999999999765 5576 899999999999999999999999999999999888878999
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHH
Q 009915 491 ALMERLGPNFNRDQNGMHSQLFALS 515 (522)
Q Consensus 491 ~Lme~~~~~F~~d~~Gm~~ql~~L~ 515 (522)
-+|-+-...|.. ..||.+.|..++
T Consensus 675 ~~~~~q~~~~~q-~~~~~~~l~~~r 698 (813)
T KOG1648|consen 675 LLMLRQRGKFPQ-RPGMSKCLLNLR 698 (813)
T ss_pred HHHHHhcccCCC-CCCccccccccc
Confidence 888776666643 246655555444
No 2
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=100.00 E-value=1.6e-38 Score=305.74 Aligned_cols=148 Identities=31% Similarity=0.653 Sum_probs=128.6
Q ss_pred CcEEEEeeCCeEEccCCcc----cccCCceEEEEeeCCceeEEeeecCCCCC-Cc-------------------------
Q 009915 42 GAELVYLKDNVTIHPTQFA----SERISGRLKLIKQGSSLFMTWIPYKGQNS-NT------------------------- 91 (522)
Q Consensus 42 ~~~llf~Ks~V~vhpt~~~----~d~I~G~L~l~~~~~~~~l~W~P~~~~~~-~~------------------------- 91 (522)
.++|||+|+||||||+++. ++||||||+|++++++++|+|+|.++... ..
T Consensus 3 ~~kllfeKsgVyIHps~~~~~~~d~~IpGfL~Ivek~~~~~l~w~P~e~~~d~s~~l~s~~d~ss~~~~~~~~~~~~~e~ 82 (213)
T PF12068_consen 3 SVKLLFEKSGVYIHPSASKHSDQDDNIPGFLRIVEKDSEVLLEWSPSEDSSDASQVLYSWKDSSSVVESDETDFDSGYEP 82 (213)
T ss_pred cceEEEEeCCEEEcCCccccCcccccCCeEEEEEEeCCCcccccCCcccccCcchheecccCccccccccccccCCCcCC
Confidence 5799999999999999987 79999999999999999999999887411 00
Q ss_pred -c--cc----------------ccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCceEeecCChHHHHHH
Q 009915 92 -R--LS----------------EKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLAT 152 (522)
Q Consensus 92 -~--~~----------------~~d~~~~~~~~v~ls~I~sI~~~~p~~g~~~~il~~~dG~~lPpL~F~~GG~~~fL~~ 152 (522)
+ .+ ..+....++|+|||+|||||++++|++|||||+|++|||+.+||||||+||+++||++
T Consensus 83 dw~~vnt~~~~~~~~s~~~~s~~~~~~~~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~~ 162 (213)
T PF12068_consen 83 DWAVVNTVSKKKRLHSSSPASSPSSSRSSYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDGTSLPPLHFHDGGSKEFLKS 162 (213)
T ss_pred CcccccCCCCccccCCCCCCCCCcCCCcceEEEEEhhheeeEEecCCCCCceEEEEEecCCCccCceEEecCCHHHHHHH
Confidence 0 00 0001122379999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccCCCCceEEEeCCc-hhhhhhhccccCCc
Q 009915 153 IKQHVLLVRSVEDANVFLVNDFD-NRLQRTLSSLELPR 189 (522)
Q Consensus 153 L~~~~~l~rS~~d~~~~lv~~~~-~~l~~~~s~~~~~~ 189 (522)
|++|+.|.||+.|+++|||++.. ++|+++|+.+++.+
T Consensus 163 L~~~v~l~~S~~D~~~~lv~~~~s~aL~~S~~~L~lf~ 200 (213)
T PF12068_consen 163 LQRYVTLARSPRDSNLYLVNDHNSEALSQSFSELQLFD 200 (213)
T ss_pred HHhhEEEeecCCCCcEEEEECCCchHHHHHHHHhhccc
Confidence 99999999999999999999976 89999999887653
No 3
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=307.23 Aligned_cols=193 Identities=42% Similarity=0.822 Sum_probs=168.4
Q ss_pred CCCHHHHHH-hhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhh-cC
Q 009915 328 PLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ-SI 405 (522)
Q Consensus 328 plt~~~W~~-~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~-~~ 405 (522)
.++..-|-. .++..|.+-+.-+||+.||.|||..++|++||+|||.+|.+.+|.++|..+...++++|+++.+.-. ++
T Consensus 404 ki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysm 483 (781)
T KOG2224|consen 404 KIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSM 483 (781)
T ss_pred hhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344456655 6666788888889999999999999999999999999999999999999999999999998876543 67
Q ss_pred ChHHHhhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHH
Q 009915 406 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQS 485 (522)
Q Consensus 406 ~~~q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~A 485 (522)
++++...| |+.....++|||.||+|+++||.+++||+.+.++|||+.|+.|||.+||.|||+||+||+|.-+++|.++
T Consensus 484 speeh~~f--wknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqneset 561 (781)
T KOG2224|consen 484 SPEEHIAF--WKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESET 561 (781)
T ss_pred CHHHHHHH--HhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccch
Confidence 77776666 7777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc------------------------cC--C--CCChHHHHHHHHHHHHHHHHhC
Q 009915 486 FWCFVALMERLG------------------------PN--F--NRDQNGMHSQLFALSKVSLFIF 522 (522)
Q Consensus 486 Fw~F~~Lme~~~------------------------~~--F--~~d~~Gm~~ql~~L~~Llq~~~ 522 (522)
||||++||..|. +| | .+.-..|..++..|++|+++|.
T Consensus 562 fwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~ 626 (781)
T KOG2224|consen 562 FWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMH 626 (781)
T ss_pred hhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhh
Confidence 999999998542 22 2 3445689999999999999983
No 4
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-28 Score=258.09 Aligned_cols=169 Identities=28% Similarity=0.391 Sum_probs=139.2
Q ss_pred HHHHHHhhhcC-------CCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhh
Q 009915 331 SEEWTTFLDNE-------GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (522)
Q Consensus 331 ~~~W~~~~~~~-------g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~ 403 (522)
..+|...+..+ --..-.+++|+.| ++|||+++|++||..+.|.+.. ...++.|+++++.-.
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~s~elk~li-RkGiP~~~R~~VW~~~~g~~~~-----------~~~~~~yq~ll~~~~ 190 (436)
T KOG2058|consen 123 QLRWELELQSNIKLHSPNDFPPRSDELKRLI-RKGIPPELRGEVWWVLSGARRQ-----------LNYPGYYQELLRKGD 190 (436)
T ss_pred HHHHHHHhhhhhcccccccccCCcHHHHHHH-HcCCChhhhhHHHHHHhcchhh-----------ccCchhHHHHHhcCC
Confidence 35677666553 1124468998887 9999999999999999994221 112778888876522
Q ss_pred cCChHHHhhhhhhhhhcccccccccccCCCC-CCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCCh
Q 009915 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 482 (522)
Q Consensus 404 ~~~~~q~~~~~~~~e~~~~IekDV~RT~r~~-~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E 482 (522)
... .....+|+.|+.||||++ +.|..++..++..|+|||.||+.|||.+|||||||.|||++|++|++|
T Consensus 191 ~~~----------~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~E 260 (436)
T KOG2058|consen 191 EKK----------SPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSE 260 (436)
T ss_pred Ccc----------chHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCCh
Confidence 111 023458999999999999 899988877789999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHhhccC-CCCChHHHHHHHHHHHHHHHHh
Q 009915 483 SQSFWCFVALMERLGPN-FNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 483 ~~AFw~F~~Lme~~~~~-F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
++|||||+.+++++.+. |..++.|.+.+..+|..||+.-
T Consensus 261 E~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~ 300 (436)
T KOG2058|consen 261 EDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREK 300 (436)
T ss_pred HHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHH
Confidence 99999999999999876 5888999999999999999864
No 5
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.95 E-value=1e-27 Score=230.03 Aligned_cols=147 Identities=36% Similarity=0.653 Sum_probs=127.5
Q ss_pred cCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHhhhhhhhhhcccccccccccCCCCC
Q 009915 356 YGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVT 435 (522)
Q Consensus 356 ~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~~~~~~~e~~~~IekDV~RT~r~~~ 435 (522)
++|||+++|++||+.++|+.+...+. .+..|+++++++...... ..++|++||.||+|+++
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~~---------~~~~Y~~l~~~~~~~~~~----------~~~~I~~Dv~Rt~~~~~ 62 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTSA---------DKDLYSRLLKETAPKDKS----------IVHQIEKDLRRTFPEHS 62 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhcc---------cchHHHHHHHhhcCCChh----------hHHHHhcccCCCCCCch
Confidence 78999999999999999997754321 367899888876443221 23589999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHHHHHHhhccC-CCCChHHHHHHHHHH
Q 009915 436 FFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFAL 514 (522)
Q Consensus 436 ~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~~Lme~~~~~-F~~d~~Gm~~ql~~L 514 (522)
+|+..++++++.|++||.+|+.+||++||||||++|||+||+++.+|++|||||++||+++.++ |..++.|++..+..+
T Consensus 63 ~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
T smart00164 63 FFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQL 142 (199)
T ss_pred hhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHH
Confidence 9998777889999999999999999999999999999999999988999999999999998877 567788999999999
Q ss_pred HHHHHHh
Q 009915 515 SKVSLFI 521 (522)
Q Consensus 515 ~~Llq~~ 521 (522)
..+|+..
T Consensus 143 ~~ll~~~ 149 (199)
T smart00164 143 DRLVKEY 149 (199)
T ss_pred HHHHHHH
Confidence 9999864
No 6
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.95 E-value=5.5e-29 Score=267.73 Aligned_cols=197 Identities=53% Similarity=0.881 Sum_probs=179.3
Q ss_pred CCCCCCCHHHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhh
Q 009915 324 PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (522)
Q Consensus 324 ~r~~plt~~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~ 403 (522)
++.+.++.++|......++++......+..+|++|+-+.+|+++|++++++++|+.+..+|...... ..+|...+.+|.
T Consensus 143 ~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~ 221 (488)
T KOG2197|consen 143 NRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWS 221 (488)
T ss_pred CCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhhe
Confidence 4566689999999998889886666666689999998899999999999999999999999888887 999999999999
Q ss_pred cCChHHHhhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChH
Q 009915 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDES 483 (522)
Q Consensus 404 ~~~~~q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~ 483 (522)
.....+......+.+....|.+||.||++.+.+|.+.++++...|.+||.+|++||+++||||||+|+++|++.++.+|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~ 301 (488)
T KOG2197|consen 222 STSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEV 301 (488)
T ss_pred eccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCch
Confidence 88777665554466777899999999999999999988777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHh
Q 009915 484 QSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 484 ~AFw~F~~Lme~~~~~F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
+|||||++||++++.||..++.||+.|+..+..|++++
T Consensus 302 ~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~ 339 (488)
T KOG2197|consen 302 EAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQEL 339 (488)
T ss_pred HHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999888764
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.91 E-value=1.8e-24 Score=235.76 Aligned_cols=177 Identities=31% Similarity=0.524 Sum_probs=144.4
Q ss_pred CCCCHHHHHHhhhcCCC--c-CCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhh
Q 009915 327 PPLGSEEWTTFLDNEGR--V-MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (522)
Q Consensus 327 ~plt~~~W~~~~~~~g~--~-~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~ 403 (522)
.+.....|.+.++..+. . ....+++.++ +.|||+++|+.||.+++|.+++... ....|+.+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~gip~~~r~~vw~~~~~~~~~~~~----------~~~~y~~~~~~~~ 247 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELI-RKGIPNELRGDVWEFLLGIGFDLDK----------NPGLYERLLNLHR 247 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHH-HhcCChHhhhhhHHHHhccchhhcc----------CchHHHHHHHHHH
Confidence 34556788899987776 2 6778999988 6779999999999999999876433 4456666555433
Q ss_pred cCChHHHhhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChH
Q 009915 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDES 483 (522)
Q Consensus 404 ~~~~~q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~ 483 (522)
...... ....++|++||.||+|.+..|+.+.+...+.|+|||.+|++|||++||||||++|+||||++|..|+
T Consensus 248 ~~~~~~-------~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee 320 (496)
T COG5210 248 EAKIPT-------QEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEE 320 (496)
T ss_pred hcCCCc-------HHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhH
Confidence 221110 0345799999999999999998777655556999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHH--hhccCCCCChHHHHHHHHHHHHHHHHh
Q 009915 484 QSFWCFVALME--RLGPNFNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 484 ~AFw~F~~Lme--~~~~~F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
+|||||++||+ .+..+|..+++|++.++.+|..+++.+
T Consensus 321 ~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~ 360 (496)
T COG5210 321 QAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEEL 360 (496)
T ss_pred HHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHH
Confidence 99999999999 355678999999999999999998864
No 8
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.90 E-value=7.2e-24 Score=209.44 Aligned_cols=182 Identities=30% Similarity=0.472 Sum_probs=139.5
Q ss_pred HHhhhcCCCcCCHHHHHHHHHcCCCC--chhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCC------
Q 009915 335 TTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS------ 406 (522)
Q Consensus 335 ~~~~~~~g~~~~~~~Lk~~i~~~GIp--~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~------ 406 (522)
+..+......++.+|+|+.+ ..|+| .++|+.+|+.|||++|...+.++ ...+.++..|..++.+-..-.
T Consensus 13 edvl~~~~~~id~kelr~~~-~~g~p~~~~lR~~~WkllL~Yl~~er~~w~--s~La~~R~~Y~q~i~e~v~epg~~~~~ 89 (370)
T KOG4567|consen 13 EDVLNPADDTIDLKELRKLC-FYGVPDDASLRPLVWKLLLGYLPPERSKWT--SFLAKKRSLYKQFIEEIVDEPGKKDNS 89 (370)
T ss_pred HHhhccccchhhHHHHHHHh-hcCCCCccchhHhHHHHHHhhcChhhhhhH--HHHHHHHHHHHHHHHHhccCccccccc
Confidence 34443333347889999987 58898 58999999999999998877664 456678888988877642210
Q ss_pred ----h--------------HHHhhhhhhhhhcccccccccccCCCCCCCCCCC-------------------------ch
Q 009915 407 ----P--------------EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDD-------------------------NP 443 (522)
Q Consensus 407 ----~--------------~q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~-------------------------~~ 443 (522)
. .....+.+..+...||++||.||.|...+|+... +-
T Consensus 90 ~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl 169 (370)
T KOG4567|consen 90 KKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGL 169 (370)
T ss_pred cccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccch
Confidence 0 1112233344567899999999999999987531 11
Q ss_pred hHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCC----------hHHHHHHHHHHHHhhccCCCCC----hHHHHH
Q 009915 444 NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------ESQSFWCFVALMERLGPNFNRD----QNGMHS 509 (522)
Q Consensus 444 ~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~----------E~~AFw~F~~Lme~~~~~F~~d----~~Gm~~ 509 (522)
......|||..||..||.+|||||||.|+||||||+.+ |+|||+||+.||..+++||..+ .-||+.
T Consensus 170 ~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~ 249 (370)
T KOG4567|consen 170 TRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHF 249 (370)
T ss_pred hhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHH
Confidence 12345789999999999999999999999999999943 8999999999999999999443 449999
Q ss_pred HHHHHHHHHH
Q 009915 510 QLFALSKVSL 519 (522)
Q Consensus 510 ql~~L~~Llq 519 (522)
.|..+..+|+
T Consensus 250 ~Msr~~~~lk 259 (370)
T KOG4567|consen 250 LMSRLSELLK 259 (370)
T ss_pred HHHHHHHHHH
Confidence 8999988876
No 9
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=9.8e-22 Score=200.96 Aligned_cols=169 Identities=26% Similarity=0.454 Sum_probs=144.7
Q ss_pred cCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHhhhhhhhhhcccc
Q 009915 344 VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLI 423 (522)
Q Consensus 344 ~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~~~~~~~e~~~~I 423 (522)
.++.++||+.+ ++|||...|+.+|+.|+|+.|.++. -|....+.++.+|..+..++......... -.+..+||
T Consensus 175 ~id~~~Lr~l~-w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~----~~d~~rQI 247 (484)
T KOG1092|consen 175 IIDLEKLRKLC-WNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLTNGDE----DQDTWRQI 247 (484)
T ss_pred cccHHHHHHHc-cCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCCCccc----cCcccccc
Confidence 47888888866 8999999999999999999987654 45677888999999998887654322111 12345799
Q ss_pred cccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcC-----------------------
Q 009915 424 DKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------------------- 480 (522)
Q Consensus 424 ekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~----------------------- 480 (522)
.-|+.|+.|+.++|..+ ..++.+.+||..++.++|.+|||||.+|++.|+++++-
T Consensus 248 ~id~prm~p~~~l~q~~--~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~ 325 (484)
T KOG1092|consen 248 PIDIPRMNPHIPLFQQK--IVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENA 325 (484)
T ss_pred ccCCCCCCccccchhhH--HHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHH
Confidence 99999999999999863 36789999999999999999999999999999998771
Q ss_pred --ChHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHh
Q 009915 481 --DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 481 --~E~~AFw~F~~Lme~~~~~F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
-|++||||+.+|++.+.+||..-|+||+.++..|.+|++.|
T Consensus 326 ~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RI 368 (484)
T KOG1092|consen 326 EDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRI 368 (484)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHh
Confidence 29999999999999999999999999999999999999865
No 10
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.83 E-value=1.5e-20 Score=192.22 Aligned_cols=169 Identities=25% Similarity=0.401 Sum_probs=125.7
Q ss_pred cCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHH-HHHHhHHHHHHHHHhhhcCChHHHhhhhhhhh
Q 009915 340 NEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREY-LRCIKKSEYENIKRQWQSISPEQARRFTKFRE 418 (522)
Q Consensus 340 ~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~-~~~~~~~~Y~~l~~~w~~~~~~q~~~~~~~~e 418 (522)
+|..+.....++. ++|.|||+++|++||....|.. .+.|.+--.. +.+.+..+...+-.+-. +.......
T Consensus 284 nWe~m~~SrR~re-lWwQGiP~~VRGkvW~laIGNe-l~it~elfd~~la~Aker~ak~~aeq~~-------~sa~~re~ 354 (586)
T KOG2223|consen 284 NWEDMLKSRRVRE-LWWQGIPPSVRGKVWSLAIGNE-LNITYELFDIALARAKEREAKSLAEQMS-------NSAADREA 354 (586)
T ss_pred chHHHHhhHHHHH-HHHccCChhhcchhhHhhhCcc-cccCHHHHHHHHHHHHHHHHHHHHhhcc-------cchhhhhc
Confidence 3444445566765 6799999999999999999983 4445443221 11222222333332221 11222334
Q ss_pred hcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHHHHHHhhcc
Q 009915 419 RKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGP 498 (522)
Q Consensus 419 ~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~~Lme~~~~ 498 (522)
...+|+.|+.||||++.+|+. .+|....|..||.+|+.|.||+||||||++|+|+|++.| ++.+||.||.+|+++-..
T Consensus 355 sv~~i~LDisrTfpsl~iFqk-~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp~q 432 (586)
T KOG2223|consen 355 SVELIKLDISRTFPSLSIFQK-GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKPCQ 432 (586)
T ss_pred chhheeechhccCcceeeecc-CCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccHHH
Confidence 457999999999999999995 678999999999999999999999999999999999999 489999999999999543
Q ss_pred --CCCCChHHHHHHHHHHHHHHH
Q 009915 499 --NFNRDQNGMHSQLFALSKVSL 519 (522)
Q Consensus 499 --~F~~d~~Gm~~ql~~L~~Llq 519 (522)
.|.-|++-|..-..++...++
T Consensus 433 ~Aff~~d~s~m~~yf~tfe~~le 455 (586)
T KOG2223|consen 433 QAFFRVDHSSMLSYFATFEVFLE 455 (586)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHH
Confidence 467788888888888776554
No 11
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.82 E-value=5.9e-20 Score=177.17 Aligned_cols=145 Identities=35% Similarity=0.603 Sum_probs=105.6
Q ss_pred chhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHhhhhhhhhhcccccccccccCCCCCCCCCC
Q 009915 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD 440 (522)
Q Consensus 361 ~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~ 440 (522)
+++|+.||+.|+|..+ .. ...|.....++...............+...+|++||.||+++...+.
T Consensus 1 ~~~R~~vW~~ll~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~-- 65 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP----NY---------SNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK-- 65 (214)
T ss_dssp -CCHHHHHHHHCTCSC----HH---------HHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--
T ss_pred CChHHHHHHHHHccch----hh---------hhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--
Confidence 4689999999999976 11 11111111111111111111111223445799999999999654454
Q ss_pred CchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHHHHH-HhhccCCCCChHHHHHHHHHHHHHHH
Q 009915 441 DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM-ERLGPNFNRDQNGMHSQLFALSKVSL 519 (522)
Q Consensus 441 ~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~~Lm-e~~~~~F~~d~~Gm~~ql~~L~~Llq 519 (522)
+..++..|.+||.+|+.++|++||||||++|++++++++.+|++|||||+++| ......|..+..|++..+..+..+++
T Consensus 66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 145 (214)
T PF00566_consen 66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLK 145 (214)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHH
Confidence 45688999999999999999999999999999999988889999999999999 44556678888999999999999987
Q ss_pred H
Q 009915 520 F 520 (522)
Q Consensus 520 ~ 520 (522)
.
T Consensus 146 ~ 146 (214)
T PF00566_consen 146 K 146 (214)
T ss_dssp H
T ss_pred h
Confidence 5
No 12
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=186.90 Aligned_cols=163 Identities=26% Similarity=0.459 Sum_probs=132.3
Q ss_pred HHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHhh
Q 009915 333 EWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARR 412 (522)
Q Consensus 333 ~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~~ 412 (522)
-|+-+. |-....++++..+-.||||+++|...|+.|.|... .++.....|+.+.++.......
T Consensus 148 ~w~hi~---~~~~ktdk~~~llkeggiphslr~~lw~rlsga~~----------kkk~ae~sy~~ilk~~andk~~---- 210 (848)
T KOG2222|consen 148 LWEHID---GMELKTDKFEELLKEGGIPHSLRAFLWMRLSGALA----------KKKDAETSYEDILKACANDKLM---- 210 (848)
T ss_pred hHHhhc---ccccchHHHHHHHHcCCCCcchhHHHHHHhhhhhh----------hhccccccHHHHHHHhcccccc----
Confidence 466654 44566788989888899999999999999999832 2233445788777765432211
Q ss_pred hhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHHHH
Q 009915 413 FTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVAL 492 (522)
Q Consensus 413 ~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~~L 492 (522)
.-.||+||+.|+.|++.-|..+++.+.+.|+|||.+.++.-|++||||||.-|+|.||+.|. |+.|||++..+
T Consensus 211 ------~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaai 283 (848)
T KOG2222|consen 211 ------IGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAI 283 (848)
T ss_pred ------hhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHH
Confidence 12489999999999999999999999999999999999999999999999999999999996 77999999999
Q ss_pred HHhhcc-CC-CCChHHHHHHHHHHHHHHH
Q 009915 493 MERLGP-NF-NRDQNGMHSQLFALSKVSL 519 (522)
Q Consensus 493 me~~~~-~F-~~d~~Gm~~ql~~L~~Llq 519 (522)
++.+.| || ....-|++.+-.+...|+.
T Consensus 284 iedilp~nfysqtllgiqaderv~~~li~ 312 (848)
T KOG2222|consen 284 IEDILPANFYSQTLLGIQADERVMHHLIA 312 (848)
T ss_pred HHHhcCchhhhhhHhccchhHHHHHHHHH
Confidence 999875 66 4446688888777776654
No 13
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.73 E-value=1.5e-17 Score=178.28 Aligned_cols=165 Identities=23% Similarity=0.404 Sum_probs=140.1
Q ss_pred HHHHHhhhcCCCcCC---HHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChH
Q 009915 332 EEWTTFLDNEGRVMD---SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (522)
Q Consensus 332 ~~W~~~~~~~g~~~~---~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~ 408 (522)
..|+++|..+|+.++ ..++++.+ +.|+|.+.|++.|..+.|. .+-...+.++|.++......
T Consensus 174 k~W~~~f~~~G~~~~~~qt~~~~Klv-~~gipe~~rgeiW~l~sGa----------v~~~l~~~Geygkll~~~~G---- 238 (671)
T KOG4347|consen 174 KFWKKYFIKDGPNMNQIQTILLRKLL-YNGFPEDPRGEIWYLASGA----------VASLLLNPGEYGKLLHSVTG---- 238 (671)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHH-HHhcCCChHHHHHHhhhHH----------HHHhhcCcHHhhhhhhcccC----
Confidence 569999999998754 46788877 7999999999999999998 34556678999988776433
Q ss_pred HHhhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHH
Q 009915 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (522)
Q Consensus 409 q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~ 488 (522)
+.+.....|++|..|..|+++-|+.+. +...|+|||.+|++.||+|||||-||-+++.+|+++. |++|||+
T Consensus 239 ------~~~~a~eEIE~Dl~rsLpEhpA~Q~e~--gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~-EEeafwl 309 (671)
T KOG4347|consen 239 ------KRSVATEEIEPDLGRSLPEHPAFQSEP--GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCK-EEEAFWL 309 (671)
T ss_pred ------CcccccccccCCCCCCCCcchhhhCCC--chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhc-cchHHHH
Confidence 112233589999999999999999855 5699999999999999999999999999999999995 7899999
Q ss_pred HHHHHHhhccCC-CCChHHHHHHHHHHHHHHHH
Q 009915 489 FVALMERLGPNF-NRDQNGMHSQLFALSKVSLF 520 (522)
Q Consensus 489 F~~Lme~~~~~F-~~d~~Gm~~ql~~L~~Llq~ 520 (522)
++.+++++.+.| ..++.|...+..++..|++-
T Consensus 310 l~~lce~~ip~yys~~vvGtliDQ~vfe~lve~ 342 (671)
T KOG4347|consen 310 LSKLCEIYIPDYYSKTVVGTLIDQSVFEELVED 342 (671)
T ss_pred HHHHHHHhcccccchhhhhhHHHHHHHHHHHHH
Confidence 999999998875 56688998999999998863
No 14
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2e-17 Score=156.69 Aligned_cols=164 Identities=22% Similarity=0.394 Sum_probs=128.1
Q ss_pred HHHHHhhhcCCCc--CCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHH
Q 009915 332 EEWTTFLDNEGRV--MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (522)
Q Consensus 332 ~~W~~~~~~~g~~--~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q 409 (522)
.+|-.+++++... ...++|+.++ +.|||+++|+.+|.+|.|.+... ..++..|..+..+ +..
T Consensus 76 skwL~mldnw~~~m~kk~~~ir~rc-rkgippslr~Raw~ylsGa~~~~----------~~np~~~~~~~~~-----pG~ 139 (267)
T KOG2221|consen 76 SKWLHMLDNWHEEMRKKQKKIRPRC-RKGIPPSLRGRAWRYLSGAPSPP----------PKNPVVFDELGPA-----PGD 139 (267)
T ss_pred HHHHHHHHHHHHHHHhccccccchh-hcCCCcccchhHHHhhcCCCCCC----------CCCcchhhhccCC-----CCC
Confidence 6777777765433 3445777777 89999999999999999986532 1134444443222 111
Q ss_pred HhhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHH
Q 009915 410 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCF 489 (522)
Q Consensus 410 ~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F 489 (522)
. ++ .+-|.+|++|-||++.+|.....-+...|.|+|.+|..|+|+.||||+-.-|++.+|..|. +.+|||||
T Consensus 140 p----~t---~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~~~ 211 (267)
T KOG2221|consen 140 P----KT---AEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWCF 211 (267)
T ss_pred C----cc---hhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHHHH
Confidence 1 11 2479999999999999999876667899999999999999999999999999999999997 77999999
Q ss_pred HHHHHhhccCC-CCChHHHHHHHHHHHHHHH
Q 009915 490 VALMERLGPNF-NRDQNGMHSQLFALSKVSL 519 (522)
Q Consensus 490 ~~Lme~~~~~F-~~d~~Gm~~ql~~L~~Llq 519 (522)
+.+++++.+.| ......|+.+-..|..|++
T Consensus 212 vqicekylqgy~~sgleaiq~dg~il~~Llk 242 (267)
T KOG2221|consen 212 VQICEKYLQGYYSSGLEAIQNDGGILEGLLK 242 (267)
T ss_pred HHHHHHHcccccccchhhhhcccHHHHHHHH
Confidence 99999999875 5567777777777877775
No 15
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.62 E-value=4.9e-16 Score=169.10 Aligned_cols=168 Identities=24% Similarity=0.411 Sum_probs=134.4
Q ss_pred HHHHHhhhcCCCc---CCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChH
Q 009915 332 EEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (522)
Q Consensus 332 ~~W~~~~~~~g~~---~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~ 408 (522)
+.|++++.. ++. .+.+.+...+ ..|||.+-|+++|.||.-.+-.+.-.... ++-..-.|+.+.
T Consensus 550 ~~wek~~e~-~~~~~k~d~ed~~~~l-~~gvprsrrgeiwtflA~q~~~~~~l~~~---kr~~~~p~~~ll--------- 615 (948)
T KOG4436|consen 550 ETWEKILER-TRIKIKKDMEDLHSAL-RTGVPRSRRGEIWTFLAEQHSLNHALPDK---KRPPDFPYKELL--------- 615 (948)
T ss_pred HHHHHHHHH-hhhcccccHHHHHHHH-HccCchhhhHHHHHHHHHHHHHhccCCcc---cCCCCCChHHHH---------
Confidence 679999866 444 4677777766 89999999999999997543322111100 000112233333
Q ss_pred HHhhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHH
Q 009915 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (522)
Q Consensus 409 q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~ 488 (522)
..+.++.+.|-.|+-||||++++|...-++++..|.|+|.+|+..+|++|||||.+++|++||+.|. |+.||=+
T Consensus 616 -----kqLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~-e~~afel 689 (948)
T KOG4436|consen 616 -----KQLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS-EENAFEL 689 (948)
T ss_pred -----HHHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc-hhhHHHH
Confidence 3356677899999999999999999988999999999999999999999999999999999999995 8899999
Q ss_pred HHHHHHhh--ccCCCCChHHHHHHHHHHHHHHH
Q 009915 489 FVALMERL--GPNFNRDQNGMHSQLFALSKVSL 519 (522)
Q Consensus 489 F~~Lme~~--~~~F~~d~~Gm~~ql~~L~~Llq 519 (522)
+-.||-++ +..|.+||..++.||++|.+|+.
T Consensus 690 lk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~h 722 (948)
T KOG4436|consen 690 LKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLH 722 (948)
T ss_pred HHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHH
Confidence 99999764 45799999999999999999986
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.45 E-value=1.5e-13 Score=145.64 Aligned_cols=150 Identities=28% Similarity=0.447 Sum_probs=112.9
Q ss_pred CHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHhhhhhhhhhcccccc
Q 009915 346 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDK 425 (522)
Q Consensus 346 ~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~~~~~~~e~~~~Iek 425 (522)
...++...+ ..|||.++|+.+|..+++.-. .... ....+....++....+. ...+| +
T Consensus 134 ~~~~l~~~~-~~gip~~~r~~~W~l~~~~~~--------~~~~---~~~~~l~~~~~~~~~~~----------~~~~~-~ 190 (397)
T KOG1102|consen 134 RPLKLSRRV-LVGIPDELRGLVWQLLLYAVE--------ESLF---DSLDELYRLQLDEPEPH----------ESEII-R 190 (397)
T ss_pred cHHHHHHHh-hccccHHHHHHHHHHhcccHh--------hhhh---hhHHHHHHHhhccCCCc----------hhHHH-h
Confidence 445666666 799999999999999998610 0000 01111111111111111 11256 9
Q ss_pred cccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHHHHHHhhc-cCCCCCh
Q 009915 426 DVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLG-PNFNRDQ 504 (522)
Q Consensus 426 DV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~~Lme~~~-~~F~~d~ 504 (522)
|+.||+|.+..|....+..+..|.+||.+|+.|++++||||||..++++++.++. |++|||.++.+|.... ..|...+
T Consensus 191 d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~~~~~~~~~ 269 (397)
T KOG1102|consen 191 DLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYGLDLLSPGF 269 (397)
T ss_pred hccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccchhcccccC
Confidence 9999999999999877788999999999999999999999999999999999997 8899999999998764 4456667
Q ss_pred HHHHHHHHHHHHHHH
Q 009915 505 NGMHSQLFALSKVSL 519 (522)
Q Consensus 505 ~Gm~~ql~~L~~Llq 519 (522)
.|+..-+..++.+++
T Consensus 270 ~~l~~~~~~~~~l~~ 284 (397)
T KOG1102|consen 270 SGLQRSFRQLQRLLK 284 (397)
T ss_pred CchhhhHHHHHHHHH
Confidence 888888888888875
No 17
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=7.2e-12 Score=132.99 Aligned_cols=125 Identities=30% Similarity=0.446 Sum_probs=92.3
Q ss_pred hhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCC---------------------hHHHhhhhhhhhhc
Q 009915 362 KLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS---------------------PEQARRFTKFRERK 420 (522)
Q Consensus 362 ~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~---------------------~~q~~~~~~~~e~~ 420 (522)
..|+.+|+.+||+.|.+.+.+.- -....+..|..++....... .....+|....|..
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~ss~id--~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL~ 105 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENSSWID--NLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAELE 105 (625)
T ss_pred hhhhHHHHHhheecCCCchhHHH--HHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHHH
Confidence 57999999999999987554421 22334556666544332111 12223344445677
Q ss_pred ccccccccccCCCC-CCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHH
Q 009915 421 GLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFV 490 (522)
Q Consensus 421 ~~IekDV~RT~r~~-~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~ 490 (522)
..|++||.||||.+ .||+.+. .+.+|++||..||.-||.+||-|||+.|+||+++|+.-..++|--+.
T Consensus 106 ~~i~qDvsRtfPe~~~fFqs~~--~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~s 174 (625)
T KOG1091|consen 106 KTIDQDVSRTFPEHSLFFQSPE--VQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVS 174 (625)
T ss_pred HhhcchhhccCcchhhhhcCch--hhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHH
Confidence 89999999999999 7888654 56899999999999999999999999999999999976666655443
No 18
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=98.99 E-value=1.7e-09 Score=115.34 Aligned_cols=150 Identities=21% Similarity=0.319 Sum_probs=108.8
Q ss_pred CCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHhhhhhhhhhcc
Q 009915 342 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 421 (522)
Q Consensus 342 g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~~~~~~~e~~~ 421 (522)
|-......+.+.. ++|+|+-.|+-+|..||+.... ....|..+ ....+. ....
T Consensus 340 g~~~k~~qI~r~a-~vdvpp~~R~~iW~aLL~l~e~-------------~~a~y~~I-Dk~Ts~------------~tdr 392 (725)
T KOG1093|consen 340 GYPKKRLQILREA-YVDVPPLYRGFIWAALLQLEEN-------------HTAFYTLI-DKGTSH------------STDR 392 (725)
T ss_pred cchHHHHHHHHHh-ccCCChhHhHHHHHHHhcCccc-------------cchhhhhh-hcCCCC------------cchh
Confidence 3343444444444 7999999999999999987321 22233322 221211 1225
Q ss_pred cccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhc-CChHHHHHHHHHHHHhhccCC
Q 009915 422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM-EDESQSFWCFVALMERLGPNF 500 (522)
Q Consensus 422 ~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~-~~E~~AFw~F~~Lme~~~~~F 500 (522)
|||.|++||..-....+.+. ++++|+|+|.+++..++..-|.||.-.|++|+++.. .+|..||-||..|.-++..+|
T Consensus 393 qievdiprchQyd~~lsSp~--~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~f 470 (725)
T KOG1093|consen 393 QIEVDIPRCHQYDELLSSPK--GHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHF 470 (725)
T ss_pred hhhcccchhhhcccccCCHH--HHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999987766666544 779999999999999999999999999999988765 679999999999999998875
Q ss_pred -CCChH-HHHHHHHHHHHHHHH
Q 009915 501 -NRDQN-GMHSQLFALSKVSLF 520 (522)
Q Consensus 501 -~~d~~-Gm~~ql~~L~~Llq~ 520 (522)
..|.+ =++.-+..+..|+.+
T Consensus 471 flkdns~vikeyLs~f~~l~Af 492 (725)
T KOG1093|consen 471 FLKDNSNVIKEYLSMFSQLLAF 492 (725)
T ss_pred HhhcCchhHHHHHHHHHHHHHh
Confidence 55443 455556666666543
No 19
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=98.98 E-value=9.4e-10 Score=111.04 Aligned_cols=149 Identities=21% Similarity=0.142 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHc-CC-CCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHhhhhhhhhhccc
Q 009915 345 MDSNALRKRIFY-GG-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (522)
Q Consensus 345 ~~~~~Lk~~i~~-~G-Ip~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~~~~~~~e~~~~ 422 (522)
.+++.|++.-.. +| +.+++|+.||+.|+|..-..-.+. .|.+..+. ....+|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~~~-----------~~~~~~q~---------------hkd~nQ 99 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLDAT-----------STLTPVQK---------------HKDYNQ 99 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCccc-----------ccCChhhh---------------Ccccce
Confidence 567788765432 23 578999999999999743322111 11111111 112369
Q ss_pred ccccccccCCCCCCCCC--CCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHHHHHHhhccCC
Q 009915 423 IDKDVVRTDRSVTFFDG--DDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNF 500 (522)
Q Consensus 423 IekDV~RT~r~~~~f~~--~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~~Lme~~~~~F 500 (522)
+..||+|++...+---. -....++.|..++......+|.+.|.||.+|||..+|+|+. |.+|+-....|-....++|
T Consensus 100 V~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~~lrdf 178 (395)
T KOG2595|consen 100 VILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTLHLRDF 178 (395)
T ss_pred EEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHHHHHHH
Confidence 99999999876542110 01125567788888888899999999999999999999996 8999999888887777887
Q ss_pred -CCChHHHHHHHHHHHHHHHH
Q 009915 501 -NRDQNGMHSQLFALSKVSLF 520 (522)
Q Consensus 501 -~~d~~Gm~~ql~~L~~Llq~ 520 (522)
.+.+.+..+|+..+..+++.
T Consensus 179 M~~Tld~t~~qL~~i~~iIk~ 199 (395)
T KOG2595|consen 179 MLPTLDFTVRQLRLISPIIKE 199 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 67788999999988877753
No 20
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=98.54 E-value=2.3e-07 Score=102.38 Aligned_cols=160 Identities=19% Similarity=0.276 Sum_probs=120.9
Q ss_pred HHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHh
Q 009915 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 411 (522)
Q Consensus 332 ~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~ 411 (522)
+.|+..- .....+|+.+| .+|+|+..|-.+|..|+..- +.. . ..-.+.|..++.. ...+++
T Consensus 164 ~~~E~~r-----~~s~~~l~e~V-e~~~p~~frli~~qlLssat--d~~-----q--~~I~e~~sdl~~~----s~~~Ek 224 (948)
T KOG4436|consen 164 DLWERCR-----KKSLHKLKELV-EGGIPMHFRLIRWQLLSSAT--DRE-----Q--ALIFEDYSDLAPC----SSQQEK 224 (948)
T ss_pred hhhhhhh-----hhchhhhHHHH-hcCCchHHHHHHHHHhcccc--cch-----h--hHHHHHHHHHhhh----cchhhh
Confidence 4666543 34567888988 89999999999999998872 111 1 1134566666543 222222
Q ss_pred hhhhhhhhcccccccccccCCCCCCCCCCCch-------hHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHH
Q 009915 412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 484 (522)
Q Consensus 412 ~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~-------~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~ 484 (522)
. ....-|..|+.||.+.+.+|++...- .+..|+|+..+|.....+.|||||-+.+++.++..+. ++.
T Consensus 225 ~-----~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~-~E~ 298 (948)
T KOG4436|consen 225 E-----LHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP-VEE 298 (948)
T ss_pred h-----HHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc-HHH
Confidence 1 12347999999999999999975543 5899999999999999999999999999999999996 779
Q ss_pred HHHHHHHHHHhh--ccCCCCChHHHHHHHHHHHH
Q 009915 485 SFWCFVALMERL--GPNFNRDQNGMHSQLFALSK 516 (522)
Q Consensus 485 AFw~F~~Lme~~--~~~F~~d~~Gm~~ql~~L~~ 516 (522)
||-.++.+|..+ ...|.+.|.-+-..+.++..
T Consensus 299 assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~ 332 (948)
T KOG4436|consen 299 ASSVKVQLMILYRLRELSKPEMEPLGLCMFQLEC 332 (948)
T ss_pred HHHHHHHHHHhhcccccCCcccchhHHHHHhhcc
Confidence 999999999865 46688877766666655543
No 21
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=1.3e-05 Score=87.29 Aligned_cols=84 Identities=36% Similarity=0.648 Sum_probs=74.8
Q ss_pred CCCCCCCHHHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhh
Q 009915 324 PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (522)
Q Consensus 324 ~r~~plt~~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~ 403 (522)
.+..+++.++|+..|+.+|+..+..++.+++..+||++++|++||.+|+|.|..+++.++|..+....+..|..|..+..
T Consensus 43 ~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~ 122 (488)
T KOG2197|consen 43 KPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQ 122 (488)
T ss_pred ccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcc
Confidence 55667788999999999999976777777888999999999999999999999999999999999999999999998876
Q ss_pred cCCh
Q 009915 404 SISP 407 (522)
Q Consensus 404 ~~~~ 407 (522)
.+.+
T Consensus 123 ~~~~ 126 (488)
T KOG2197|consen 123 MMKS 126 (488)
T ss_pred hhhh
Confidence 6543
No 22
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=97.43 E-value=7.1e-05 Score=77.98 Aligned_cols=34 Identities=59% Similarity=1.096 Sum_probs=31.8
Q ss_pred CccccchhHhHHHHHHhcCChHHHHHHHHHHHHh
Q 009915 462 LGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 495 (522)
Q Consensus 462 lGYvQGMsdL~apLL~v~~~E~~AFw~F~~Lme~ 495 (522)
+|..|||+||+||||.-+-+|.++||||++||..
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 6889999999999999888999999999999984
No 23
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=2.2 Score=43.25 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=73.2
Q ss_pred CHHHHHHHHHcCCC---CchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHhhhhhhhhhccc
Q 009915 346 DSNALRKRIFYGGV---DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (522)
Q Consensus 346 ~~~~Lk~~i~~~GI---p~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~~~~~~~e~~~~ 422 (522)
..++||++. +.|- .+.+|+.|++.|..-.|...-.. ....|..+......-.....- -
T Consensus 31 elqelkqla-rqgywaqshalrgkvyqrlirdipcrtvtp--------dasvysdivgkivgkhssscl----------p 91 (559)
T KOG2801|consen 31 ELQELKQLA-RQGYWAQSHALRGKVYQRLIRDIPCRTVTP--------DASVYSDIVGKIVGKHSSSCL----------P 91 (559)
T ss_pred hHHHHHHHH-hcchHHhhhhhhhHHHHHHHhcCCccccCC--------chhHHHHHHHHHhccCCcccc----------c
Confidence 456787766 6665 67899999999987766533211 123455443322110000000 0
Q ss_pred cccccccc-CCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHHHH
Q 009915 423 IDKDVVRT-DRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVAL 492 (522)
Q Consensus 423 IekDV~RT-~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~~L 492 (522)
+..=|..| -|...+- ..+....+.||++.+..-|+|.+|..+.-+++.||-+.-+|+++|---+++
T Consensus 92 lpefvdntqvpsycln----argegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacri 158 (559)
T KOG2801|consen 92 LPEFVDNTQVPSYCLN----ARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRI 158 (559)
T ss_pred chhhcccCcCchhhhc----CcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhhee
Confidence 00000011 1211111 123357899999999999999999999999999998887888877544444
No 24
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=64.64 E-value=46 Score=27.35 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=42.6
Q ss_pred CCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCC--cCCceEe
Q 009915 64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGL--AFPPLYF 141 (522)
Q Consensus 64 I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~I~sI~~~~p~~g~~~~il~~~dG~--~lPpL~F 141 (522)
.+|.|.|.+.. -.|.|+|+.... .. ..+|++.+|..+++.|++..---+-|+.+++. .--.++|
T Consensus 12 ~~G~L~l~~d~--~~~~W~~~~~~~----------~~--~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 12 KDGTLTLTEDR--KPLEWTPKASDG----------PS--TVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp EEEEEEEETTC--SSEEEEECCSSS----------SS--EEEEETTTEEEEEE--TTSSTEEEEEEETTSC---CCCEEE
T ss_pred CCcEEEEecCC--ceEEEeecCCCC----------Cc--eEEEEHHHhhhhccCCCCCcceEEEEEEecCCcccceEEEE
Confidence 56999997542 237888864332 11 36799999999999999766566788888773 4556666
Q ss_pred e
Q 009915 142 Y 142 (522)
Q Consensus 142 ~ 142 (522)
+
T Consensus 78 ~ 78 (79)
T PF08567_consen 78 T 78 (79)
T ss_dssp -
T ss_pred e
Confidence 5
No 25
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=60.51 E-value=8.9 Score=32.52 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=27.8
Q ss_pred eeeeCCCeeEEEEeCCC-CCceEEEEEeCCCC
Q 009915 104 RAVPFTEVRSIRRHTPA-FGWQYIIVVLSSGL 134 (522)
Q Consensus 104 ~~v~ls~I~sI~~~~p~-~g~~~~il~~~dG~ 134 (522)
..|||++|-.|..++|. .+.+||.|++++|.
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECCcC
Confidence 57999999999999996 77899999999865
No 26
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=40.21 E-value=58 Score=30.08 Aligned_cols=31 Identities=32% Similarity=0.642 Sum_probs=20.8
Q ss_pred CeeEEEEeCCCCCceEEEEE---eCCCCcCCceEe
Q 009915 110 EVRSIRRHTPAFGWQYIIVV---LSSGLAFPPLYF 141 (522)
Q Consensus 110 ~I~sI~~~~p~~g~~~~il~---~~dG~~lPpL~F 141 (522)
-+..|-++.| .|.+-+|.. +.||..+|+||+
T Consensus 20 gvl~I~~rcp-~g~P~VV~t~p~l~dg~PfPTly~ 53 (167)
T COG1507 20 GVLKIAYRCP-YGEPGVVKTAPKLDDGTPFPTLYY 53 (167)
T ss_pred CceEEEEECC-CCCceEEeecCCCCCCCcCCceee
Confidence 4456767777 344444443 359999999999
No 27
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=35.46 E-value=83 Score=34.27 Aligned_cols=56 Identities=25% Similarity=0.409 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhhcCCCCccccc--hhHhHHHHHHhcCChHHHHHHHHHHHHhhccC
Q 009915 443 PNVHLLRDILLTYSFYNFDLGYCQG--MSDLLSPILFVMEDESQSFWCFVALMERLGPN 499 (522)
Q Consensus 443 ~~~~~L~~IL~ay~~~n~~lGYvQG--MsdL~apLL~v~~~E~~AFw~F~~Lme~~~~~ 499 (522)
+.+..|..++.-||. +.++-|.-. -..|+-||+..--+-++.|=||-++|+++.|.
T Consensus 90 ~vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPk 147 (669)
T KOG3636|consen 90 PVVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPK 147 (669)
T ss_pred chhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCC
Confidence 345577888888875 334555443 34577787776666789999999999998764
No 28
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=30.81 E-value=2.9e+02 Score=22.93 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=29.6
Q ss_pred ccCCceEEEEee-CCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEE
Q 009915 62 ERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYI 126 (522)
Q Consensus 62 d~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~I~sI~~~~p~~g~~~~ 126 (522)
+.-+|+|.|.+. ++.+-+.|.|-+..+. .-..+-|.-.|..-.++.+...|.=|+
T Consensus 13 d~~KG~l~l~~~~d~l~~f~W~~r~~~~~----------~e~d~il~pg~~~f~~V~~c~tGRVy~ 68 (85)
T PF04683_consen 13 DPRKGLLYLYKSEDGLLHFCWKPRDTTGE----------VEDDLILFPGDATFKKVPQCKTGRVYV 68 (85)
T ss_dssp -SS-EEEEEEETTTS-EEEEEEETST-------------EEEEEEE-TTTEEEEE-TTSSTS-EEE
T ss_pred CCCCEEEEEEECCCCeEEEEEEEcCcCCC----------cccceecCCCCeEEEECCcCCCCeEEE
Confidence 447899999985 5789999999665310 011233444555555554445665555
No 29
>PF07024 ImpE: ImpE protein; InterPro: IPR009211 This entry contains proteins of unknown function that occur in bacteria that interact with and manipulate eukaryotic cells []. Salmonella enterica protein SciE is encoded in the centisome 7 genomic island (SCI) []. Deletion of the entire island affects the ability of bacteria to enter eukaryotic cells []. Therefore, SciE and other SCI proteins may be involved in virulence. Interestingly, another member of this family, Rhizobium leguminosarum protein ImpE, has been reported to be encoded by an avirulence locus involved in temperature-dependent protein secretion []. It is believed that the imp locus is involved in the secretion to the environment of proteins, including periplasmic RbsB protein, that cause blocking of R. leguminosarum infection in plants [].; PDB: 1ZBP_A.
Probab=25.09 E-value=74 Score=28.55 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=22.0
Q ss_pred eeCCCeeEEEEeCCCC----CceEEEEEeCCCCc
Q 009915 106 VPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA 135 (522)
Q Consensus 106 v~ls~I~sI~~~~p~~----g~~~~il~~~dG~~ 135 (522)
||+++|.||++.+|.. =|.-..|.++||..
T Consensus 30 vPf~~I~~l~~~~p~~l~DlvWrpa~i~l~dG~~ 63 (123)
T PF07024_consen 30 VPFSRIASLEFEPPASLRDLVWRPAEITLRDGGE 63 (123)
T ss_dssp EEGGGEEEEEE----SSGGGTEEEEEEEETTTEE
T ss_pred EEHHHccceecCCCCCHHHhcccceEEEEeCCCe
Confidence 9999999999999943 36668899999865
No 30
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=24.98 E-value=72 Score=27.14 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=49.3
Q ss_pred EEEeeCCeEEccCCcccccCCceEEEEeeCCceeEEeeecCCCCCCcccccc---ccCcceeeeeeCCCeeEEEEeCCCC
Q 009915 45 LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEK---DRNLYTIRAVPFTEVRSIRRHTPAF 121 (522)
Q Consensus 45 llf~Ks~V~vhpt~~~~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~---d~~~~~~~~v~ls~I~sI~~~~p~~ 121 (522)
++|.-+-..|.|. +.++|.|.|.+. .|-++|+............ ..........|+++|..|+.|.--+
T Consensus 2 i~~s~~c~~I~~~----~~~~G~l~i~~~----~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyll 73 (106)
T PF14844_consen 2 ILLSVPCELITPL----DSIPGTLIITKS----SIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLL 73 (106)
T ss_dssp -SEEEEEEEEETT----EEEEEEEEE-SS----EEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETT
T ss_pred EEEEEEEEEEEee----eeEEEEEEEeCC----EEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcC
Confidence 4455555556553 459999999855 4667777111110000000 0111113568999999999987755
Q ss_pred CceEEEEEeCCCCcCCceEeecCCh
Q 009915 122 GWQYIIVVLSSGLAFPPLYFYTGGV 146 (522)
Q Consensus 122 g~~~~il~~~dG~~lPpL~F~~GG~ 146 (522)
---=+.|...||.++= |-|.+.+.
T Consensus 74 r~~AlEiF~~dg~s~f-~~F~~~~~ 97 (106)
T PF14844_consen 74 RDTALEIFFSDGRSYF-FNFESKKE 97 (106)
T ss_dssp EEEEEEEEETTS-EEE-EE-SSHHH
T ss_pred cceEEEEEEcCCcEEE-EEcCCHHH
Confidence 4344688889998632 44444444
No 31
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=23.86 E-value=51 Score=21.44 Aligned_cols=15 Identities=47% Similarity=0.798 Sum_probs=11.4
Q ss_pred CccccchhHhHHHHH
Q 009915 462 LGYCQGMSDLLSPIL 476 (522)
Q Consensus 462 lGYvQGMsdL~apLL 476 (522)
.||.||+.|.+--.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 489999998775544
No 32
>PRK09039 hypothetical protein; Validated
Probab=23.28 E-value=80 Score=33.26 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=33.9
Q ss_pred ccccchhHhHHHHHHhcCChHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 009915 463 GYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSL 519 (522)
Q Consensus 463 GYvQGMsdL~apLL~v~~~E~~AFw~F~~Lme~~~~~F~~d~~Gm~~ql~~L~~Llq 519 (522)
|||-.|+-|+.++.+|+ ..|-.-..|+..-...+......+..++..|.++|.
T Consensus 18 g~vd~~~~ll~~~~f~l----~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~ 70 (343)
T PRK09039 18 GFVDALSTLLLVIMFLL----TVFVVAQFFLSREISGKDSALDRLNSQIAELADLLS 70 (343)
T ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777666665 456666666666555555555566666666666554
No 33
>PRK03636 hypothetical protein; Provisional
Probab=20.78 E-value=97 Score=29.63 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred eeEEEEeCCCCCceEEEEEeCCCCcCCceEeecCChHHHHHHHHhcccccccCCCCceEEEeCC
Q 009915 111 VRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDF 174 (522)
Q Consensus 111 I~sI~~~~p~~g~~~~il~~~dG~~lPpL~F~~GG~~~fL~~L~~~~~l~rS~~d~~~~lv~~~ 174 (522)
+-.||+..-..+..++++++-.|..-+|+-|+.+|. .+.++-+-|-++. -+-+.++|+.=.+
T Consensus 40 L~~VHFVe~~~~~~r~l~iS~~~~~~~pF~F~k~~~-~~~d~e~aFhdir-lN~~~~iYIql~F 101 (179)
T PRK03636 40 MEKVHFVENAEYCPRGLVMSAHGVDDVPFRFFKGNV-MTTDAEKSFHDIR-LNRDEDIYIQLNF 101 (179)
T ss_pred HhheeeeccccCCCceEEEEeeccCCCceEEEeCCc-eecCHHHHHHHHH-cCCCCCeEEEEec
Confidence 346788888888899999999999999999999998 7777777777765 3456669997544
Done!