Query 009915
Match_columns 522
No_of_seqs 276 out of 1462
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:48:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 1E-31 3.5E-36 283.4 16.6 179 331-521 8-214 (396)
2 2qfz_A TBC1 domain family memb 100.0 9.3E-32 3.2E-36 278.6 14.1 179 330-521 25-227 (345)
3 2qq8_A TBC1 domain family memb 100.0 3.6E-31 1.2E-35 273.2 14.2 187 331-521 21-211 (334)
4 3qye_A TBC1 domain family memb 100.0 7.5E-32 2.6E-36 277.7 6.8 173 330-521 29-206 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.9E-30 1E-34 263.5 11.0 164 331-521 5-172 (310)
6 4hl4_A TBC1 domain family memb 99.9 1.2E-26 4.1E-31 235.0 6.3 162 331-521 20-186 (292)
7 3qwl_A TBC1 domain family memb 99.8 9.1E-19 3.1E-23 177.2 16.4 152 332-521 27-185 (294)
8 2cay_A VPS36 PH domain, vacuol 95.7 0.027 9.4E-07 50.5 8.0 102 44-161 30-136 (145)
9 2hth_B Vacuolar protein sortin 94.7 0.25 8.4E-06 44.0 10.8 95 44-155 18-126 (140)
10 1pfj_A TFIIH basal transcripti 88.4 1.4 4.7E-05 37.3 7.3 63 65-145 21-83 (108)
11 2kr0_A Proteasomal ubiquitin r 32.0 3E+02 0.01 28.4 11.1 118 26-158 6-133 (411)
12 2r2y_A Protein ADRM1; proteaso 31.5 2.4E+02 0.0083 25.0 9.1 61 61-133 43-104 (153)
13 1y5o_A TFB1, RNA polymerase II 25.7 2.3E+02 0.0077 24.0 7.3 55 63-131 11-65 (115)
14 1zbp_A Hypothetical protein VP 24.7 46 0.0016 32.5 3.4 30 106-135 168-201 (273)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.97 E-value=1e-31 Score=283.37 Aligned_cols=179 Identities=23% Similarity=0.432 Sum_probs=153.4
Q ss_pred HHHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHH
Q 009915 331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 410 (522)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~ 410 (522)
.++|++++..+. .++.++||+++ ++|||+.+|+.||++|||++|.+.+. |......++..|..++++|......
T Consensus 8 ~~kw~~lL~~~~-~~d~~~Lr~l~-~~GIP~~lR~~vW~~LLg~~~~~~~~--~~~~l~~~~~~Y~~l~~~~~~~~~~-- 81 (396)
T 1fkm_A 8 ISKFDNILKDKT-IINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKR--QEGFLQRKRKEYRDSLKHTFSDQHS-- 81 (396)
T ss_dssp HHHHHHHHSSCS-BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGGG--HHHHHHHHHHHHHHHHHHTSSSSCS--
T ss_pred HHHHHHHHcCCC-CCCHHHHHHHH-HcCCCHHHHHHHHHHHHCCCCCChhH--HHHHHHHHHHHHHHHHHHHhhccCc--
Confidence 489999998643 47899999977 68999999999999999999987654 4566777899999999987652110
Q ss_pred hhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcC----------
Q 009915 411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------- 480 (522)
Q Consensus 411 ~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~---------- 480 (522)
...+..++|++||.||+|++++|.. ..+++.|+|||.+|+.+||++||||||++||||||+|+.
T Consensus 82 ----~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~ 155 (396)
T 1fkm_A 82 ----RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID 155 (396)
T ss_dssp ----THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred ----ccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence 1123346899999999999999986 457899999999999999999999999999999999862
Q ss_pred --------C----------hHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHh
Q 009915 481 --------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 481 --------~----------E~~AFw~F~~Lme~~~~~F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
+ |++|||||++||+++..+|..++.|++.++..|..||+..
T Consensus 156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~ 214 (396)
T 1fkm_A 156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRI 214 (396)
T ss_dssp GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Confidence 1 8999999999999999999999999999999999999864
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.97 E-value=9.3e-32 Score=278.57 Aligned_cols=179 Identities=20% Similarity=0.399 Sum_probs=150.1
Q ss_pred CHHHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHH
Q 009915 330 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (522)
Q Consensus 330 t~~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q 409 (522)
..++|.++++.+ .++.++||+++ ++|||+++|+.||++|||++|.+.+ +|......++.+|..++++|......+
T Consensus 25 r~~kw~~~l~~~--~~d~~~Lr~l~-~~GiP~~~R~~vW~~llg~~p~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~~ 99 (345)
T 2qfz_A 25 RLDKFKQLLAGP--NTDLEELRRLS-WSGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRKQKEYFAFIEHYYDSRNDE 99 (345)
T ss_dssp HHHHHHHHHHCS--BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTSSCSBGG--GHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHH-HCCCCHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 358999999854 47899999987 6999999999999999999987654 455666778999999999986532111
Q ss_pred HhhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcC---------
Q 009915 410 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--------- 480 (522)
Q Consensus 410 ~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~--------- 480 (522)
...+..++|++||.||+|+ ++|..+ ..++.|+|||.+|+.+||++|||||||+||||||+++.
T Consensus 100 -----~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~ 171 (345)
T 2qfz_A 100 -----VHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEV 171 (345)
T ss_dssp ------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC----
T ss_pred -----chHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccc
Confidence 1223456899999999999 999863 46789999999999999999999999999999999874
Q ss_pred ---------------ChHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHh
Q 009915 481 ---------------DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 481 ---------------~E~~AFw~F~~Lme~~~~~F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
+|++|||||++||+++.++|..++.|++.++.+|..||+..
T Consensus 172 ~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~ 227 (345)
T 2qfz_A 172 DTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRI 227 (345)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHH
Confidence 28999999999999999999999999999999999999864
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=273.20 Aligned_cols=187 Identities=22% Similarity=0.316 Sum_probs=140.5
Q ss_pred HHHHH-HhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHH
Q 009915 331 SEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (522)
Q Consensus 331 ~~~W~-~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q 409 (522)
..+|. .++.+++...+.++||+++ ++|||+++|+.||++|+|++ +..+.+.+.......+..|..+...+......+
T Consensus 21 ~~~W~~~il~~w~~~~~~~~lr~l~-~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d 98 (334)
T 2qq8_A 21 VLTWNNEILPNWETMWCSRKVRDLW-WQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVENED 98 (334)
T ss_dssp HHHHHHTTGGGCC--CCCHHHHHHH-HTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhHHhccChHHHHHHH-HCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence 48998 5888888888889999876 79999999999999999986 455666555555555566665544432211111
Q ss_pred Hh-hhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHH
Q 009915 410 AR-RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (522)
Q Consensus 410 ~~-~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~ 488 (522)
.. ......+...+|++||.||+|++++|.. .+++++.|++||.+|+.+||++|||||||+|||+||+++ +|++||||
T Consensus 99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~ 176 (334)
T 2qq8_A 99 AGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIA 176 (334)
T ss_dssp --------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHH
Confidence 00 0011133457999999999999999986 456889999999999999999999999999999999999 59999999
Q ss_pred HHHHHHhhc--cCCCCChHHHHHHHHHHHHHHHHh
Q 009915 489 FVALMERLG--PNFNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 489 F~~Lme~~~--~~F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
|++||+++. ..|..++.||+..+..|..||+..
T Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 211 (334)
T 2qq8_A 177 FSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEEN 211 (334)
T ss_dssp HHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 999999864 457788999999999999998754
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.97 E-value=7.5e-32 Score=277.68 Aligned_cols=173 Identities=24% Similarity=0.408 Sum_probs=145.9
Q ss_pred CHHHHHHhhhcCCC---cCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 009915 330 GSEEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 406 (522)
Q Consensus 330 t~~~W~~~~~~~g~---~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~ 406 (522)
+.++|+++++.+|+ ..+.++||+++ ++|||+++|+.||++|+|++++.++..++ ...++..|..+.+++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~~~-- 102 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQLTS-- 102 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSCCT--
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhcCC--
Confidence 56899999998887 35789999988 68999999999999999986643222111 12245678887765321
Q ss_pred hHHHhhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHH
Q 009915 407 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 486 (522)
Q Consensus 407 ~~q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AF 486 (522)
..++|++||.||+|++++|....+++++.|++||.+|+.+||++|||||||+|+|+||+++ +|++||
T Consensus 103 ------------~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF 169 (331)
T 3qye_A 103 ------------QQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAF 169 (331)
T ss_dssp ------------THHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHH
T ss_pred ------------chhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHH
Confidence 2258999999999999999988888999999999999999999999999999999999999 589999
Q ss_pred HHHHHHHHhh--ccCCCCChHHHHHHHHHHHHHHHHh
Q 009915 487 WCFVALMERL--GPNFNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 487 w~F~~Lme~~--~~~F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
|||++||+++ ..+|.+++.|++.++.+|..||+..
T Consensus 170 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 206 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDY 206 (331)
T ss_dssp HHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999984 5678999999999999999999754
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.9e-30 Score=263.55 Aligned_cols=164 Identities=25% Similarity=0.404 Sum_probs=139.6
Q ss_pred HHHHHHhhhcCCCc--CCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChH
Q 009915 331 SEEWTTFLDNEGRV--MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (522)
Q Consensus 331 ~~~W~~~~~~~g~~--~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~ 408 (522)
.++|.++++++++. .+.++||+++ ++|||+++|+.||+.|+|+.+. ......|..+..+..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l~-~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~----- 67 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTLV-KSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS----- 67 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHHH-HHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHH-HCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence 47899999887665 3668999988 7999999999999999999763 113457777654321
Q ss_pred HHhhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHH
Q 009915 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (522)
Q Consensus 409 q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~ 488 (522)
+..++|++||.||+|++++|....+++++.|++||.+|+.+||++|||||||+|||+||+++ +|++||||
T Consensus 68 ---------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~ 137 (310)
T 3hzj_A 68 ---------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCV 137 (310)
T ss_dssp ---------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred ---------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHH
Confidence 12358999999999999999988788999999999999999999999999999999999999 59999999
Q ss_pred HHHHHHh--hccCCCCChHHHHHHHHHHHHHHHHh
Q 009915 489 FVALMER--LGPNFNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 489 F~~Lme~--~~~~F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
|++||++ +...|.+++.|++.++.+|..||+..
T Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 172 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQ 172 (310)
T ss_dssp HHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHHHHHHh
Confidence 9999987 56778888999999999999998853
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.93 E-value=1.2e-26 Score=235.01 Aligned_cols=162 Identities=22% Similarity=0.179 Sum_probs=128.3
Q ss_pred HHHHHHhhhcCCCcCCHHHHHHHHHcC-C-CCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChH
Q 009915 331 SEEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (522)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~~Lk~~i~~~-G-Ip~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~ 408 (522)
.++++.++.. ..++.++||+.+..+ | +|+++|+.||+.|+|+.+...... |.... .
T Consensus 20 ~~~i~~~l~~--~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~--------~ 77 (292)
T 4hl4_A 20 VAEIHQALNS--DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNL--------R 77 (292)
T ss_dssp HHHHHHHHTS--SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTH--------H
T ss_pred HHHHHHHHcC--CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhh--------c
Confidence 3667777743 457899999988653 3 789999999999999988754321 11000 0
Q ss_pred HHhhhhhhhhhcccccccccccCCCCCCCCCC--CchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHH
Q 009915 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 486 (522)
Q Consensus 409 q~~~~~~~~e~~~~IekDV~RT~r~~~~f~~~--~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AF 486 (522)
...+..++|++||.||+|+++.|..+ .+..++.|+|||.+|+.+||++|||||||+|||+||+++ +|++||
T Consensus 78 ------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF 150 (292)
T 4hl4_A 78 ------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLAT 150 (292)
T ss_dssp ------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHH
T ss_pred ------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHH
Confidence 01223468999999999999988642 244678999999999999999999999999999999999 599999
Q ss_pred HHHHHHHHhhccC-CCCChHHHHHHHHHHHHHHHHh
Q 009915 487 WCFVALMERLGPN-FNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 487 w~F~~Lme~~~~~-F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
|||++||++..++ |.+++.|++.++..+..||+..
T Consensus 151 ~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~ 186 (292)
T 4hl4_A 151 SLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQV 186 (292)
T ss_dssp HHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999987665 5778899999999999998864
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=177.23 Aligned_cols=152 Identities=13% Similarity=0.178 Sum_probs=114.3
Q ss_pred HHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHh
Q 009915 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 411 (522)
Q Consensus 332 ~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~ 411 (522)
+..+.++. +..++.++||+++++||||+.+|+.||++|+|+.|.+++. |..+...++++|+.+.++...
T Consensus 27 ~~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~~------- 95 (294)
T 3qwl_A 27 KSLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALKV------- 95 (294)
T ss_dssp HHHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhhh-------
Confidence 45666664 5789999999999877799999999999999999988765 677888899999999887321
Q ss_pred hhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHH-------HHhhcCCCCccccchhHhHHHHHHhcCChHH
Q 009915 412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILL-------TYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 484 (522)
Q Consensus 412 ~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~-------ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~ 484 (522)
.++|+.+.++ ...-+...+. +|. ++++ .++|||++|++++++++.+|++
T Consensus 96 --------~r~I~~~tP~--------------~~vfl~~~~~~~~~l~~~~~-~~~~-~~~~~~~~Iaa~ll~l~~~E~d 151 (294)
T 3qwl_A 96 --------VRFVSDATPQ--------------AEVYLRMYQLESGKLPRSPS-FPLE-PDDEVFLAIAKAMEEMVEDSVD 151 (294)
T ss_dssp --------TTSCCTTSCH--------------HHHHHHHHHHHHTCCCSSTT-SCCC-HHHHHHHHHHHHHHHHCCSHHH
T ss_pred --------hhhhhccCch--------------HHHHHHHHHccccccccccc-CCcc-cchhhHHHHHHHHHHHhCCHHH
Confidence 2355543321 1111111111 111 1233 2569999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHh
Q 009915 485 SFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFI 521 (522)
Q Consensus 485 AFw~F~~Lme~~~~~F~~d~~Gm~~ql~~L~~Llq~~ 521 (522)
|||||++||+++..+|..++.||+.++ ++||+.+
T Consensus 152 AFW~f~~Lm~~l~~~f~~~~~gl~~~l---~~LL~~~ 185 (294)
T 3qwl_A 152 CYWITRRFVNQLNTKYRDSLPQLPKAF---EQYLNLE 185 (294)
T ss_dssp HHHHHHHHHHHHHTTTTTTGGGHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCChhHHHHHH---HHHHHHH
Confidence 999999999999999999999998876 6666643
No 8
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=95.75 E-value=0.027 Score=50.54 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=75.8
Q ss_pred EEEEeeCCeEEccCCcc-cccCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCC
Q 009915 44 ELVYLKDNVTIHPTQFA-SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (522)
Q Consensus 44 ~llf~Ks~V~vhpt~~~-~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~I~sI~~~~p~~g 122 (522)
.+||..++|-++....+ ...-.|.|.|+ .--|-|+|... .. -..|++||+.|..+.+.+|..|
T Consensus 30 ~il~~~d~V~Ly~g~~k~~~~k~G~lyLT----shRIIyv~~~~-----------~~-~~SfslPL~~v~~~e~~~~~fg 93 (145)
T 2cay_A 30 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAK-----------PT-QNSLGLELDDLAYVNYSSGFLT 93 (145)
T ss_dssp CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSC-----------HH-HHCEEEEGGGEEEEEEECSSSS
T ss_pred EEEEEcCCcceecCCCCCcCCCccEEEEE----cCeEEEecCCC-----------Cc-ceEEEeEhHheeeeeEEcCccc
Confidence 68888889999887644 35567777776 34578887432 11 1248999999999999999887
Q ss_pred ceE-EEEEeC---CCCcCCceEeecCChHHHHHHHHhcccccc
Q 009915 123 WQY-IIVVLS---SGLAFPPLYFYTGGVREFLATIKQHVLLVR 161 (522)
Q Consensus 123 ~~~-~il~~~---dG~~lPpL~F~~GG~~~fL~~L~~~~~l~r 161 (522)
+.. |++..+ .|...--|-|..||..+|.+.|.+-+.-.+
T Consensus 94 ~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~~al~~~~ 136 (145)
T 2cay_A 94 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERALENIL 136 (145)
T ss_dssp SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHHHHHHHHH
Confidence 654 666775 356678899999999999999887554443
No 9
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=94.70 E-value=0.25 Score=43.98 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=71.9
Q ss_pred EEEEeeCCeEEccCCcccccCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCc
Q 009915 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW 123 (522)
Q Consensus 44 ~llf~Ks~V~vhpt~~~~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~I~sI~~~~p~~g~ 123 (522)
.+|+..++|-++....+...-.|.|.|+ .--|-|+.... . . ..+++||+.|.++...+|.+|-
T Consensus 18 ~il~~~~~V~Ly~g~~k~~~k~G~l~LT----shRli~~d~~~-~-----------~-~s~~lpl~~v~~~e~~~~~f~~ 80 (140)
T 2hth_B 18 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKN-H-----------E-CCMAILLSQIVFIEEQAAGIGK 80 (140)
T ss_dssp CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTC-C-----------S-CCEEEEGGGEEEEEEECCTTSS
T ss_pred eEEEEcCCEEEecCCCCCCCcCCEEEEe----cCEEEEecCCC-C-----------c-eEEEEEhHHeeeeeeecccccc
Confidence 5788889999987765556677888887 44678876432 1 1 2489999999999999997764
Q ss_pred -eEEEEEeCC-------------CCcCCceEeecCChHHHHHHHHh
Q 009915 124 -QYIIVVLSS-------------GLAFPPLYFYTGGVREFLATIKQ 155 (522)
Q Consensus 124 -~~~il~~~d-------------G~~lPpL~F~~GG~~~fL~~L~~ 155 (522)
.-|++.++. |...--|-|+.||..+|...|..
T Consensus 81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~ 126 (140)
T 2hth_B 81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE 126 (140)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH
T ss_pred CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHH
Confidence 356777764 33455799999999999999977
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=88.37 E-value=1.4 Score=37.34 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=48.5
Q ss_pred CceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCceEeecC
Q 009915 65 SGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTG 144 (522)
Q Consensus 65 ~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~I~sI~~~~p~~g~~~~il~~~dG~~lPpL~F~~G 144 (522)
.|.|.|... .|+|+|+.. +. ...++++++|...++.|++.--=-+-|++++|.++ .++|-++
T Consensus 21 dGtL~l~~d----~i~W~p~~~-~~------------~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~-~F~Ftn~ 82 (108)
T 1pfj_A 21 DGALYLMAE----RIAWAPEGK-DR------------FTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSNE 82 (108)
T ss_dssp BCEEEEETT----EEEEECSSS-SS------------CSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEE-EEECCCS
T ss_pred CceEEEEcc----eEEEccCCC-CC------------ceEEEehhhhhcceeCCCCCccEEEEEEEeCCCce-EEEEcCc
Confidence 399999866 899999544 21 12456899999999999976655678889988766 8889887
Q ss_pred C
Q 009915 145 G 145 (522)
Q Consensus 145 G 145 (522)
+
T Consensus 83 ~ 83 (108)
T 1pfj_A 83 S 83 (108)
T ss_dssp S
T ss_pred H
Confidence 5
No 11
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=31.97 E-value=3e+02 Score=28.40 Aligned_cols=118 Identities=10% Similarity=0.099 Sum_probs=62.1
Q ss_pred ccccCcccCCCC---CCCCCcEEEEeeCCeEEccCCcccccCCceEEEEee-CCceeEEeeecCCCCCCccccccccCcc
Q 009915 26 MMRSDSSKRSSS---SESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLY 101 (522)
Q Consensus 26 ~~~~~~~~~~~~---~~~~~~~llf~Ks~V~vhpt~~~~d~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~ 101 (522)
||+-..+.+.++ ..+++.-|=|--.|+-+-.+...-|.-+|+|.|.+. ++-+-++|.|-.... .+-
T Consensus 6 ~~~~~~F~~~~~~~~~s~~~~lveFkAGk~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~-------~Ed--- 75 (411)
T 2kr0_A 6 TTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGN-------VED--- 75 (411)
T ss_dssp CSCSCCCTTSCCCCCSSCCSCSEEECEEEEEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCC-------EEE---
T ss_pred ccccccccCCCCCcccCCCceeEEEeCceEEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCC-------ccc---
Confidence 346666555442 122333333433333333332334568999999984 567889999954221 011
Q ss_pred eeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCceEeecC------ChHHHHHHHHhccc
Q 009915 102 TIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTG------GVREFLATIKQHVL 158 (522)
Q Consensus 102 ~~~~v~ls~I~sI~~~~p~~g~~~~il~~~dG~~lPpL~F~~G------G~~~fL~~L~~~~~ 158 (522)
.+-|.=.|..-.++.+...|+=|+ |.-+++. .-||+|= .-.++.+.+..++.
T Consensus 76 -dlii~P~d~~f~~V~~c~tGRVyv-LkF~ss~---~r~fFWmQe~~~~~D~~~~~~vN~ll~ 133 (411)
T 2kr0_A 76 -DLIIFPDDCEFKRVPQCPSGRVYV-LKFKAGS---KRLFFWMQEPKTDQDEEHCRKVNEYLN 133 (411)
T ss_dssp -EEEECTTSEEEEECTTCSSSCEEE-EEETTTC---CEEEEEECCSCGGGHHHHHHHHHHHHH
T ss_pred -ceEEcCCceEEEECCCCCCCeEEE-EEecCCC---ceeEEEecCCCcccHHHHHHHHHHHHh
Confidence 122322566666665656775554 3334422 3345441 22478888877666
No 12
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=31.48 E-value=2.4e+02 Score=24.98 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=35.4
Q ss_pred cccCCceEEEEee-CCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCC
Q 009915 61 SERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSG 133 (522)
Q Consensus 61 ~d~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~I~sI~~~~p~~g~~~~il~~~dG 133 (522)
-|.-+|+|.|.+. ++.+-+.|.|-+.... +- .+-|.=.|..-.++.+...|.=|+ |.-+++
T Consensus 43 Pd~rKG~l~l~~~ed~l~hf~W~~R~t~~v-------Ed----DlIi~P~d~~F~kV~~c~tGRVyv-LkF~ss 104 (153)
T 2r2y_A 43 PDKRKGLVYIQQTDDSLIHFCWKDRTSGTV-------ED----DLIIFPDDCEFKRVPQCPSGRVYV-LKFKAG 104 (153)
T ss_dssp ECCSCEEEEEEECTTSCEEEEEEETTTCCE-------EE----EEECCTTSEEEEECTTCTTSCEEE-EEETTT
T ss_pred ECCCCEEEEEEECCCCcEEEEEecCCCCCc-------cc----eEEEcCCCeEEEECCCCCCCeEEE-EEecCC
Confidence 3557999999984 5678899999643210 10 122222555555555556775554 333443
No 13
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=25.65 E-value=2.3e+02 Score=23.97 Aligned_cols=55 Identities=13% Similarity=0.294 Sum_probs=40.7
Q ss_pred cCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeC
Q 009915 63 RISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLS 131 (522)
Q Consensus 63 ~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~I~sI~~~~p~~g~~~~il~~~ 131 (522)
-..|.|.|.+...=..|.|+|-.+ + . ..+|+|+.|..++--|.+..-=-+-|+-+
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g-~---------~----~isI~l~~It~LQqTp~ts~KvmLKI~~k 65 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDG-D---------K----VHTVVLSTIDKLQATPASSEKMMLRLIGK 65 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSS-S---------C----EEEEESTTCSEEEECCTTCSSEEEEEEEC
T ss_pred ecccEEEEccCCCcceEEEEECCC-C---------c----cEEEEhhhhhhhhcCCCCCCceEEEEEEe
Confidence 477999999888888999999544 1 1 36799999999877666655445555555
No 14
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=24.75 E-value=46 Score=32.54 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=25.9
Q ss_pred eeCCCeeEEEEeCCCC----CceEEEEEeCCCCc
Q 009915 106 VPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA 135 (522)
Q Consensus 106 v~ls~I~sI~~~~p~~----g~~~~il~~~dG~~ 135 (522)
||+++|.+|.+.+|.. =|.-..|.+.||..
T Consensus 168 lPf~~I~~l~~~~P~~l~DlvWrpa~l~l~dG~~ 201 (273)
T 1zbp_A 168 VPIASINTLEIKSATSLLESVWRPVEFDIDGLGE 201 (273)
T ss_dssp EEGGGEEEEEECCCCSSGGGTEEEEEEEETTTEE
T ss_pred eeHHHhhcccccCCCcHHHhhccccEEEEecCCe
Confidence 9999999999999944 36668999999876
Done!