Query 009916
Match_columns 522
No_of_seqs 399 out of 2596
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 3.7E-35 1.3E-39 276.8 21.6 177 3-189 11-188 (196)
2 2cjk_A Nuclear polyadenylated 100.0 9.3E-35 3.2E-39 267.2 14.0 167 3-185 1-167 (167)
3 4f02_A Polyadenylate-binding p 100.0 1E-33 3.5E-38 273.2 20.3 167 4-186 14-183 (213)
4 2qfj_A FBP-interacting repress 100.0 1.2E-33 4E-38 270.5 17.5 180 4-188 27-209 (216)
5 3md3_A Nuclear and cytoplasmic 100.0 9.2E-33 3.1E-37 252.6 20.8 163 6-183 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 1E-32 3.5E-37 253.5 20.0 162 4-181 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 2.1E-32 7.2E-37 250.5 21.7 161 5-181 2-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 1E-31 3.6E-36 248.0 20.1 164 3-182 1-175 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 4.3E-31 1.5E-35 249.3 21.7 178 3-186 2-196 (198)
10 2g4b_A Splicing factor U2AF 65 100.0 7.7E-31 2.6E-35 242.1 19.8 158 3-182 2-172 (172)
11 1fje_B Nucleolin RBD12, protei 100.0 2.3E-31 7.9E-36 246.9 13.0 163 3-185 11-175 (175)
12 3smz_A Protein raver-1, ribonu 100.0 2.1E-29 7.1E-34 252.2 21.6 170 3-186 93-266 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 4E-29 1.4E-33 249.9 21.5 172 3-182 7-281 (282)
14 3tyt_A Heterogeneous nuclear r 100.0 2.7E-29 9.4E-34 241.9 19.1 171 4-181 3-204 (205)
15 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-29 6E-34 253.7 17.9 171 4-185 116-292 (292)
16 2adc_A Polypyrimidine tract-bi 100.0 1E-28 3.5E-33 240.8 19.6 172 3-184 32-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 4.8E-29 1.6E-33 236.4 16.1 171 4-184 2-197 (198)
18 2ghp_A U4/U6 snRNA-associated 100.0 2.5E-28 8.6E-33 245.3 18.3 160 2-187 38-200 (292)
19 3smz_A Protein raver-1, ribonu 100.0 9.7E-28 3.3E-32 240.1 21.0 156 3-187 20-178 (284)
20 3sde_A Paraspeckle component 1 100.0 5.2E-28 1.8E-32 240.5 18.2 157 3-188 20-183 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.4E-22 4.9E-27 185.8 17.0 148 34-187 2-153 (158)
22 2i2y_A Fusion protein consists 99.8 4.5E-21 1.5E-25 174.7 12.6 136 44-185 10-149 (150)
23 4f25_A Polyadenylate-binding p 99.8 4.3E-21 1.5E-25 167.5 10.5 108 4-121 4-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.8 3.1E-19 1E-23 152.0 11.1 80 3-82 17-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.8 7.7E-20 2.6E-24 194.9 6.4 169 21-189 8-187 (437)
26 4fxv_A ELAV-like protein 1; RN 99.8 9.7E-19 3.3E-23 148.8 11.0 80 104-183 18-98 (99)
27 1u6f_A Tcubp1, RNA-binding pro 99.8 7E-18 2.4E-22 151.3 15.2 90 99-188 36-126 (139)
28 2lxi_A RNA-binding protein 10; 99.8 4.2E-19 1.4E-23 148.6 6.8 82 5-86 1-86 (91)
29 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.8E-18 9.6E-23 157.2 12.8 84 103-186 37-121 (156)
30 2lxi_A RNA-binding protein 10; 99.8 9.7E-19 3.3E-23 146.4 7.7 83 105-187 1-86 (91)
31 3s8s_A Histone-lysine N-methyl 99.8 2.9E-18 1E-22 148.8 10.5 83 3-85 4-88 (110)
32 2cqd_A RNA-binding region cont 99.7 1.4E-17 4.8E-22 144.8 14.1 88 100-187 12-99 (116)
33 2cpz_A CUG triplet repeat RNA- 99.7 9.8E-18 3.4E-22 145.6 13.0 87 102-188 22-109 (115)
34 2dgs_A DAZ-associated protein 99.7 6.3E-18 2.2E-22 142.8 11.5 85 2-86 7-92 (99)
35 2dgs_A DAZ-associated protein 99.7 9.4E-18 3.2E-22 141.7 12.5 87 102-188 7-93 (99)
36 2lea_A Serine/arginine-rich sp 99.7 1.6E-18 5.6E-23 155.7 8.0 123 49-188 6-131 (135)
37 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5E-18 1.7E-22 157.3 11.5 137 52-188 11-156 (165)
38 2dnz_A Probable RNA-binding pr 99.7 9.2E-18 3.1E-22 140.4 11.9 85 103-187 3-88 (95)
39 1x5u_A Splicing factor 3B subu 99.7 1E-17 3.5E-22 142.9 12.3 88 101-188 11-99 (105)
40 3s8s_A Histone-lysine N-methyl 99.7 7.2E-18 2.5E-22 146.3 11.5 83 103-185 4-87 (110)
41 1whw_A Hypothetical protein ri 99.7 7.3E-18 2.5E-22 142.3 11.2 85 2-86 5-91 (99)
42 2dgo_A Cytotoxic granule-assoc 99.7 1.5E-17 5.1E-22 144.3 13.3 85 3-87 13-99 (115)
43 2dnm_A SRP46 splicing factor; 99.7 6.9E-18 2.4E-22 143.6 10.9 88 101-188 9-97 (103)
44 1whw_A Hypothetical protein ri 99.7 1.3E-17 4.6E-22 140.6 12.4 85 103-187 6-91 (99)
45 1x5s_A Cold-inducible RNA-bind 99.7 4.4E-18 1.5E-22 144.4 9.5 86 1-86 8-95 (102)
46 2cq0_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 142.1 12.2 87 101-187 11-98 (103)
47 1x5s_A Cold-inducible RNA-bind 99.7 9.7E-18 3.3E-22 142.3 11.5 87 102-188 9-96 (102)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.8E-18 2.7E-22 142.8 10.6 87 103-189 10-97 (102)
49 2cqg_A TDP-43, TAR DNA-binding 99.7 1.3E-17 4.6E-22 141.8 12.0 85 3-87 13-97 (103)
50 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.5E-18 1.5E-22 144.3 8.9 87 1-87 8-96 (102)
51 3s7r_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 138.0 10.6 79 2-80 8-87 (87)
52 2lkz_A RNA-binding protein 5; 99.7 2.6E-18 8.9E-23 145.4 7.2 81 2-82 6-94 (95)
53 2dnz_A Probable RNA-binding pr 99.7 1.2E-17 4.1E-22 139.7 11.1 84 3-86 3-88 (95)
54 3ucg_A Polyadenylate-binding p 99.7 3.9E-18 1.3E-22 140.8 7.9 83 1-83 2-85 (89)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.5E-18 3.3E-22 137.3 10.1 81 1-81 3-85 (85)
56 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-17 3.9E-22 137.4 10.6 81 3-83 4-86 (87)
57 1x5t_A Splicing factor 3B subu 99.7 1.2E-17 4.1E-22 140.0 11.0 86 103-188 3-90 (96)
58 2dgo_A Cytotoxic granule-assoc 99.7 3.3E-17 1.1E-21 142.2 14.0 88 101-188 11-99 (115)
59 2cpz_A CUG triplet repeat RNA- 99.7 9E-18 3.1E-22 145.9 10.4 84 3-86 23-108 (115)
60 3md1_A Nuclear and cytoplasmic 99.7 1.6E-17 5.4E-22 135.4 11.1 80 5-84 1-82 (83)
61 2dh8_A DAZ-associated protein 99.7 1.3E-17 4.5E-22 142.3 10.8 88 101-188 12-99 (105)
62 2hvz_A Splicing factor, argini 99.7 9.4E-18 3.2E-22 142.2 9.6 98 6-114 1-100 (101)
63 2cq0_A Eukaryotic translation 99.7 1.1E-17 3.9E-22 142.2 10.2 84 3-86 13-98 (103)
64 2cqg_A TDP-43, TAR DNA-binding 99.7 4.5E-17 1.5E-21 138.5 13.8 87 102-189 12-98 (103)
65 2do4_A Squamous cell carcinoma 99.7 3.2E-17 1.1E-21 138.6 12.8 84 102-186 14-98 (100)
66 3md1_A Nuclear and cytoplasmic 99.7 2.1E-17 7.1E-22 134.6 11.1 81 105-185 1-82 (83)
67 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.8E-17 6.1E-22 136.2 10.8 82 103-184 4-86 (87)
68 2cph_A RNA binding motif prote 99.7 2.5E-17 8.5E-22 140.8 12.1 88 101-188 11-101 (107)
69 1x5u_A Splicing factor 3B subu 99.7 1.5E-17 5.1E-22 141.9 10.6 84 3-86 13-98 (105)
70 2dgp_A Bruno-like 4, RNA bindi 99.7 2.3E-17 7.7E-22 141.0 11.7 87 101-187 9-99 (106)
71 2cpf_A RNA binding motif prote 99.7 2.2E-17 7.6E-22 139.0 11.5 86 103-188 3-92 (98)
72 2dh8_A DAZ-associated protein 99.7 8.9E-18 3E-22 143.4 9.1 85 2-86 13-98 (105)
73 1x4h_A RNA-binding protein 28; 99.7 1.8E-17 6.3E-22 142.6 11.0 85 3-87 13-105 (111)
74 2do4_A Squamous cell carcinoma 99.7 2.2E-17 7.5E-22 139.7 11.2 82 3-85 15-98 (100)
75 2dng_A Eukaryotic translation 99.7 3.7E-17 1.3E-21 139.1 12.7 85 102-188 12-97 (103)
76 2cqd_A RNA-binding region cont 99.7 3.4E-17 1.2E-21 142.4 12.7 85 2-87 14-100 (116)
77 3s7r_A Heterogeneous nuclear r 99.7 2.4E-17 8.1E-22 135.8 11.0 80 102-181 8-87 (87)
78 1x5t_A Splicing factor 3B subu 99.7 1.2E-17 4.1E-22 140.0 9.3 84 3-86 3-89 (96)
79 2d9p_A Polyadenylate-binding p 99.7 3.3E-17 1.1E-21 139.4 12.1 86 102-189 12-98 (103)
80 1wi8_A EIF-4B, eukaryotic tran 99.7 2.6E-17 9E-22 140.3 11.4 84 103-188 13-98 (104)
81 1x4h_A RNA-binding protein 28; 99.7 3.4E-17 1.2E-21 140.9 12.1 88 101-188 11-105 (111)
82 2cpf_A RNA binding motif prote 99.7 1.7E-17 6E-22 139.7 10.0 84 3-86 3-91 (98)
83 2dnm_A SRP46 splicing factor; 99.7 1.4E-17 4.9E-22 141.6 9.2 83 3-85 11-95 (103)
84 2lkz_A RNA-binding protein 5; 99.7 9.1E-18 3.1E-22 142.0 7.9 81 103-183 7-94 (95)
85 2dng_A Eukaryotic translation 99.7 3E-17 1E-21 139.7 11.1 83 3-86 13-96 (103)
86 2cph_A RNA binding motif prote 99.7 2.3E-17 7.7E-22 141.1 10.2 85 2-86 12-100 (107)
87 1s79_A Lupus LA protein; RRM, 99.7 9.2E-18 3.1E-22 144.0 7.8 81 2-83 8-89 (103)
88 2cqc_A Arginine/serine-rich sp 99.7 4.2E-17 1.4E-21 136.3 11.6 83 101-183 11-94 (95)
89 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-17 4.9E-22 144.4 9.1 102 3-131 6-109 (115)
90 2cqc_A Arginine/serine-rich sp 99.7 2.8E-17 9.7E-22 137.3 10.5 80 3-82 13-94 (95)
91 2rs2_A Musashi-1, RNA-binding 99.7 2.2E-17 7.6E-22 142.6 10.1 85 2-86 22-107 (109)
92 1p27_B RNA-binding protein 8A; 99.7 3.1E-17 1.1E-21 140.1 10.9 82 3-84 21-104 (106)
93 1x4b_A Heterogeneous nuclear r 99.7 2.3E-17 7.7E-22 143.5 10.0 86 103-188 25-110 (116)
94 3p5t_L Cleavage and polyadenyl 99.7 8.5E-18 2.9E-22 139.9 7.0 80 6-85 2-85 (90)
95 2rs2_A Musashi-1, RNA-binding 99.7 2.8E-17 9.6E-22 142.0 10.4 86 102-187 22-107 (109)
96 2cq3_A RNA-binding protein 9; 99.7 8.5E-17 2.9E-21 136.8 13.2 87 101-189 11-98 (103)
97 2dnh_A Bruno-like 5, RNA bindi 99.7 6.8E-17 2.3E-21 137.7 12.6 85 103-188 13-101 (105)
98 2dgp_A Bruno-like 4, RNA bindi 99.7 2.1E-17 7E-22 141.2 9.3 85 2-86 10-99 (106)
99 2e5h_A Zinc finger CCHC-type a 99.7 2.5E-17 8.5E-22 137.5 9.6 79 3-81 14-94 (94)
100 1wi8_A EIF-4B, eukaryotic tran 99.7 3.1E-17 1.1E-21 139.9 10.3 83 3-86 13-97 (104)
101 3p5t_L Cleavage and polyadenyl 99.7 9.4E-18 3.2E-22 139.6 6.8 82 106-187 2-86 (90)
102 2cpe_A RNA-binding protein EWS 99.7 4.1E-17 1.4E-21 141.1 11.2 87 101-187 11-106 (113)
103 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-16 4.1E-21 135.9 13.8 86 101-188 11-97 (103)
104 1oo0_B CG8781-PA, drosophila Y 99.7 3.6E-17 1.2E-21 140.7 10.7 85 102-186 23-108 (110)
105 2db1_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 146.7 7.5 86 3-89 15-104 (118)
106 2fy1_A RNA-binding motif prote 99.7 6.8E-17 2.3E-21 141.2 12.5 85 103-188 5-90 (116)
107 2cpy_A RNA-binding protein 12; 99.7 9.9E-18 3.4E-22 145.8 7.1 85 2-87 12-98 (114)
108 1p27_B RNA-binding protein 8A; 99.7 4.4E-17 1.5E-21 139.1 11.0 84 103-186 21-105 (106)
109 2dhg_A TRNA selenocysteine ass 99.7 4.6E-17 1.6E-21 138.5 11.1 86 102-188 6-94 (104)
110 3q2s_C Cleavage and polyadenyl 99.7 3.7E-18 1.3E-22 166.9 4.8 82 104-185 67-151 (229)
111 2do0_A HnRNP M, heterogeneous 99.7 8.8E-17 3E-21 139.1 12.9 82 3-85 13-96 (114)
112 1wez_A HnRNP H', FTP-3, hetero 99.7 1.6E-17 5.5E-22 142.0 8.1 80 3-84 13-93 (102)
113 2x1f_A MRNA 3'-END-processing 99.7 4.4E-17 1.5E-21 136.9 10.6 83 5-87 2-86 (96)
114 1wg5_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 140.3 9.8 83 3-86 13-97 (104)
115 2dnh_A Bruno-like 5, RNA bindi 99.7 6E-17 2.1E-21 138.1 11.4 83 3-86 13-100 (105)
116 4f25_A Polyadenylate-binding p 99.7 4.4E-17 1.5E-21 142.0 10.7 82 104-187 4-86 (115)
117 2d9p_A Polyadenylate-binding p 99.7 4.6E-17 1.6E-21 138.4 10.6 83 3-87 13-97 (103)
118 3ns6_A Eukaryotic translation 99.7 8.6E-18 3E-22 142.9 5.9 83 3-85 4-95 (100)
119 2div_A TRNA selenocysteine ass 99.7 3.8E-17 1.3E-21 137.9 9.8 82 3-84 7-95 (99)
120 2div_A TRNA selenocysteine ass 99.7 5.9E-17 2E-21 136.6 10.9 85 102-186 6-96 (99)
121 2e5h_A Zinc finger CCHC-type a 99.7 5.7E-17 1.9E-21 135.3 10.7 81 102-182 13-94 (94)
122 2jrs_A RNA-binding protein 39; 99.7 5E-17 1.7E-21 140.3 10.6 82 3-84 24-107 (108)
123 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5E-17 1.7E-21 133.0 10.1 80 103-182 5-85 (85)
124 2ywk_A Putative RNA-binding pr 99.7 5.3E-17 1.8E-21 135.8 10.2 79 2-81 13-93 (95)
125 2fy1_A RNA-binding motif prote 99.7 8.6E-17 2.9E-21 140.6 11.8 84 3-87 5-90 (116)
126 2jrs_A RNA-binding protein 39; 99.7 7.4E-17 2.5E-21 139.2 11.2 85 101-185 22-107 (108)
127 2dis_A Unnamed protein product 99.7 7.2E-17 2.5E-21 138.5 11.1 84 3-86 6-95 (109)
128 2dhg_A TRNA selenocysteine ass 99.7 5.5E-17 1.9E-21 138.1 10.3 83 3-86 7-93 (104)
129 2cpe_A RNA-binding protein EWS 99.7 3.9E-17 1.3E-21 141.3 9.4 84 3-86 13-106 (113)
130 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.1E-17 3.1E-21 136.6 11.5 83 2-86 12-96 (103)
131 3ex7_B RNA-binding protein 8A; 99.7 4.7E-17 1.6E-21 143.5 10.0 87 102-188 19-106 (126)
132 1u6f_A Tcubp1, RNA-binding pro 99.7 6.1E-17 2.1E-21 145.2 10.9 84 3-86 40-125 (139)
133 2x1f_A MRNA 3'-END-processing 99.7 6.7E-17 2.3E-21 135.8 10.5 83 104-186 1-84 (96)
134 2mss_A Protein (musashi1); RNA 99.7 2.2E-17 7.7E-22 132.1 7.2 74 7-80 1-75 (75)
135 2cq3_A RNA-binding protein 9; 99.7 1.1E-16 3.8E-21 136.1 11.9 84 2-87 12-97 (103)
136 1oo0_B CG8781-PA, drosophila Y 99.7 5.4E-17 1.8E-21 139.7 10.1 82 3-84 24-107 (110)
137 1p1t_A Cleavage stimulation fa 99.7 1.5E-17 5.1E-22 141.5 6.3 86 2-87 5-92 (104)
138 2dgw_A Probable RNA-binding pr 99.7 7.9E-17 2.7E-21 133.9 10.4 80 3-84 8-88 (91)
139 2dnn_A RNA-binding protein 12; 99.7 1.9E-17 6.4E-22 143.6 6.7 80 3-84 14-94 (109)
140 2kxn_B Transformer-2 protein h 99.7 5.7E-17 1.9E-21 144.5 9.9 85 101-185 42-127 (129)
141 1x4b_A Heterogeneous nuclear r 99.7 6.7E-17 2.3E-21 140.5 10.2 83 4-86 26-109 (116)
142 1wez_A HnRNP H', FTP-3, hetero 99.7 4.6E-17 1.6E-21 139.2 8.9 83 102-186 12-94 (102)
143 1x4a_A Splicing factor, argini 99.7 1.6E-16 5.5E-21 136.6 12.4 84 101-187 18-102 (109)
144 2cqp_A RNA-binding protein 12; 99.7 6.6E-17 2.3E-21 136.1 9.7 84 102-185 12-96 (98)
145 2la6_A RNA-binding protein FUS 99.7 1.2E-16 4E-21 135.1 11.1 82 101-182 9-99 (99)
146 2kxn_B Transformer-2 protein h 99.7 5E-17 1.7E-21 144.9 9.2 82 3-84 44-127 (129)
147 1x4c_A Splicing factor, argini 99.7 2E-16 6.7E-21 136.2 12.7 84 102-192 12-101 (108)
148 4a8x_A RNA-binding protein wit 99.7 6.4E-17 2.2E-21 133.0 9.2 82 3-84 2-86 (88)
149 2cqp_A RNA-binding protein 12; 99.7 3.4E-17 1.2E-21 137.9 7.6 81 3-83 13-95 (98)
150 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-16 3.9E-21 132.9 10.7 82 2-85 5-88 (92)
151 2ek1_A RNA-binding protein 12; 99.7 2.8E-17 9.6E-22 137.4 6.9 79 3-81 13-93 (95)
152 2khc_A Testis-specific RNP-typ 99.7 1.2E-16 4.2E-21 139.1 11.3 82 101-182 36-118 (118)
153 2cq4_A RNA binding motif prote 99.7 1.4E-17 4.7E-22 144.5 5.1 83 3-85 23-106 (114)
154 3n9u_C Cleavage and polyadenyl 99.7 6.2E-17 2.1E-21 149.1 9.8 81 4-84 54-138 (156)
155 2la6_A RNA-binding protein FUS 99.7 1.1E-16 3.6E-21 135.3 10.4 79 3-81 11-99 (99)
156 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.3E-16 4.4E-21 146.0 11.8 83 3-85 37-121 (156)
157 1sjq_A Polypyrimidine tract-bi 99.7 7.6E-17 2.6E-21 138.8 9.5 80 2-87 13-96 (105)
158 3ns6_A Eukaryotic translation 99.7 1.6E-17 5.6E-22 141.2 5.3 84 103-186 4-95 (100)
159 2khc_A Testis-specific RNP-typ 99.7 4.3E-17 1.5E-21 142.1 8.0 79 3-81 38-118 (118)
160 3ex7_B RNA-binding protein 8A; 99.7 8.2E-17 2.8E-21 141.9 9.8 84 3-86 20-105 (126)
161 2dgx_A KIAA0430 protein; RRM d 99.7 1.9E-16 6.5E-21 133.3 11.5 81 103-186 7-92 (96)
162 3ucg_A Polyadenylate-binding p 99.7 1.8E-16 6.2E-21 130.7 11.1 80 104-184 5-85 (89)
163 2hgl_A HNRPF protein, heteroge 99.7 3.1E-17 1.1E-21 147.8 7.0 84 3-87 42-129 (136)
164 4a8x_A RNA-binding protein wit 99.7 9.2E-17 3.1E-21 132.1 9.1 82 104-185 3-86 (88)
165 1wg5_A Heterogeneous nuclear r 99.7 1.2E-16 4.2E-21 136.6 10.1 85 102-187 12-97 (104)
166 2ywk_A Putative RNA-binding pr 99.7 1.6E-16 5.4E-21 132.8 10.6 81 102-183 13-94 (95)
167 3ulh_A THO complex subunit 4; 99.7 1.6E-16 5.5E-21 135.9 10.8 78 3-81 27-106 (107)
168 2dgv_A HnRNP M, heterogeneous 99.7 2E-16 6.8E-21 131.4 11.0 83 103-187 6-89 (92)
169 2dgw_A Probable RNA-binding pr 99.7 2.5E-16 8.6E-21 130.8 11.6 82 102-186 7-89 (91)
170 2do0_A HnRNP M, heterogeneous 99.7 4.4E-16 1.5E-20 134.7 13.5 84 102-186 12-96 (114)
171 1x4e_A RNA binding motif, sing 99.7 3.9E-17 1.3E-21 133.9 6.3 78 3-80 3-82 (85)
172 2m2b_A RNA-binding protein 10; 99.7 7.3E-17 2.5E-21 143.7 8.5 85 102-187 20-111 (131)
173 2dgx_A KIAA0430 protein; RRM d 99.7 1.6E-16 5.4E-21 133.8 10.1 79 3-84 7-91 (96)
174 2dha_A FLJ20171 protein; RRM d 99.7 3.2E-17 1.1E-21 145.3 6.0 85 3-88 21-110 (123)
175 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.7E-17 1.3E-21 131.2 5.8 74 6-80 1-76 (77)
176 1sjq_A Polypyrimidine tract-bi 99.7 1.3E-16 4.4E-21 137.3 9.5 82 102-189 13-97 (105)
177 2m2b_A RNA-binding protein 10; 99.7 3.8E-17 1.3E-21 145.6 6.3 83 3-86 21-111 (131)
178 2fc8_A NCL protein; structure 99.7 2.8E-16 9.7E-21 133.2 11.4 84 101-187 11-95 (102)
179 2cq4_A RNA binding motif prote 99.7 3.9E-17 1.3E-21 141.6 6.1 83 103-186 23-106 (114)
180 2ek1_A RNA-binding protein 12; 99.7 7.1E-17 2.4E-21 135.0 7.4 81 103-183 13-94 (95)
181 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.3E-17 1.8E-21 137.8 6.6 81 3-84 17-99 (100)
182 1iqt_A AUF1, heterogeneous nuc 99.7 4.1E-17 1.4E-21 130.4 5.5 74 7-80 1-75 (75)
183 3ulh_A THO complex subunit 4; 99.7 3E-16 1E-20 134.2 11.3 81 101-182 25-106 (107)
184 2jwn_A Embryonic polyadenylate 99.7 1.1E-16 3.6E-21 140.8 8.4 81 4-84 35-116 (124)
185 1p1t_A Cleavage stimulation fa 99.7 9.9E-17 3.4E-21 136.3 8.0 85 103-187 6-91 (104)
186 2cpi_A CCR4-NOT transcription 99.7 2.1E-16 7.1E-21 136.8 10.1 85 102-186 12-103 (111)
187 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.5E-17 2.6E-21 129.4 6.8 76 106-181 1-76 (77)
188 2cpx_A Hypothetical protein FL 99.7 1.4E-16 4.9E-21 138.0 9.0 88 102-189 22-110 (115)
189 2cpy_A RNA-binding protein 12; 99.7 1.2E-16 4.3E-21 138.8 8.6 84 102-186 12-96 (114)
190 2dis_A Unnamed protein product 99.7 5.1E-16 1.7E-20 133.2 12.3 86 103-188 6-96 (109)
191 1x4a_A Splicing factor, argini 99.7 3.5E-16 1.2E-20 134.5 11.0 80 3-85 20-101 (109)
192 1wel_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 144.5 4.5 83 3-85 23-106 (124)
193 2lmi_A GRSF-1, G-rich sequence 99.7 3E-17 1E-21 141.2 4.0 84 3-87 9-96 (107)
194 3n9u_C Cleavage and polyadenyl 99.7 2.4E-16 8.2E-21 145.1 10.3 82 104-185 54-138 (156)
195 2kt5_A RNA and export factor-b 99.7 9.1E-16 3.1E-20 135.0 13.6 87 101-188 31-118 (124)
196 2hgl_A HNRPF protein, heteroge 99.7 1.1E-16 3.7E-21 144.3 7.7 84 101-186 40-127 (136)
197 2hgn_A Heterogeneous nuclear r 99.7 3E-17 1E-21 148.4 4.0 82 103-186 44-125 (139)
198 2kt5_A RNA and export factor-b 99.7 4.4E-16 1.5E-20 137.0 11.1 82 3-85 33-116 (124)
199 1s79_A Lupus LA protein; RRM, 99.7 1.8E-16 6E-21 136.0 8.2 80 103-183 9-88 (103)
200 2cq1_A PTB-like protein L; RRM 99.7 6.2E-16 2.1E-20 132.2 11.6 81 103-189 13-96 (101)
201 2lea_A Serine/arginine-rich sp 99.7 1.2E-16 4E-21 143.6 7.3 83 3-85 45-129 (135)
202 2mss_A Protein (musashi1); RNA 99.7 1.2E-16 4E-21 127.9 6.5 75 107-181 1-75 (75)
203 2dgu_A Heterogeneous nuclear r 99.6 1.2E-15 4.2E-20 129.8 13.2 80 102-189 8-88 (103)
204 2fc9_A NCL protein; structure 99.6 5.2E-16 1.8E-20 131.4 10.8 82 102-187 12-94 (101)
205 2hgm_A HNRPF protein, heteroge 99.6 8.9E-17 3.1E-21 142.9 6.3 80 3-84 40-122 (126)
206 2jwn_A Embryonic polyadenylate 99.6 6E-16 2E-20 136.0 11.4 82 104-186 35-117 (124)
207 2ki2_A SS-DNA binding protein 99.6 4.7E-17 1.6E-21 134.8 4.1 80 6-86 2-83 (90)
208 2dnq_A RNA-binding protein 4B; 99.6 6.9E-16 2.4E-20 128.0 11.1 79 102-188 5-84 (90)
209 2xs2_A Deleted in azoospermia- 99.6 1.2E-16 4.1E-21 135.6 6.5 82 3-85 7-88 (102)
210 2dnn_A RNA-binding protein 12; 99.6 1.8E-16 6.1E-21 137.5 7.7 81 103-185 14-94 (109)
211 1iqt_A AUF1, heterogeneous nuc 99.6 1.1E-16 3.7E-21 127.9 5.9 75 107-181 1-75 (75)
212 2kn4_A Immunoglobulin G-bindin 99.6 3.8E-16 1.3E-20 142.9 10.3 83 3-85 68-152 (158)
213 2cpi_A CCR4-NOT transcription 99.6 1.9E-16 6.4E-21 137.1 7.7 81 4-84 14-102 (111)
214 1x4c_A Splicing factor, argini 99.6 8.4E-16 2.9E-20 132.2 11.7 77 3-86 13-96 (108)
215 1x5o_A RNA binding motif, sing 99.6 5.4E-16 1.9E-20 134.2 10.3 80 3-83 23-112 (114)
216 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.5E-16 1.6E-20 139.1 10.0 78 3-80 61-140 (140)
217 1fj7_A Nucleolin RBD1, protein 99.6 1.1E-16 3.9E-21 135.5 5.6 84 103-188 15-99 (101)
218 1wex_A Hypothetical protein (r 99.6 1.1E-15 3.7E-20 131.4 11.8 79 103-187 13-94 (104)
219 3q2s_C Cleavage and polyadenyl 99.6 2.4E-16 8.3E-21 154.0 8.7 80 4-83 67-150 (229)
220 2fc9_A NCL protein; structure 99.6 4.4E-16 1.5E-20 131.9 9.1 80 2-85 12-93 (101)
221 2cq1_A PTB-like protein L; RRM 99.6 7E-16 2.4E-20 131.9 10.3 78 3-86 13-94 (101)
222 2ad9_A Polypyrimidine tract-bi 99.6 7.5E-16 2.5E-20 135.6 10.8 80 103-188 29-111 (119)
223 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.2E-16 4.2E-21 135.5 5.6 82 102-185 16-99 (100)
224 2ki2_A SS-DNA binding protein 99.6 1.3E-16 4.3E-21 132.2 5.5 81 106-187 2-83 (90)
225 1x4e_A RNA binding motif, sing 99.6 1E-16 3.5E-21 131.4 4.8 80 103-182 3-83 (85)
226 2ad9_A Polypyrimidine tract-bi 99.6 6.4E-16 2.2E-20 136.0 10.1 79 3-87 29-111 (119)
227 2db1_A Heterogeneous nuclear r 99.6 3.2E-16 1.1E-20 137.3 8.1 83 102-185 14-99 (118)
228 2err_A Ataxin-2-binding protei 99.6 5.8E-16 2E-20 133.6 9.6 83 101-185 25-108 (109)
229 2dnq_A RNA-binding protein 4B; 99.6 9.9E-16 3.4E-20 127.0 10.6 77 2-86 5-83 (90)
230 2hgn_A Heterogeneous nuclear r 99.6 8.7E-17 3E-21 145.4 4.5 81 3-85 44-125 (139)
231 1x5o_A RNA binding motif, sing 99.6 1.1E-15 3.8E-20 132.3 11.3 82 102-184 22-112 (114)
232 1wex_A Hypothetical protein (r 99.6 9.2E-16 3.2E-20 131.8 10.6 78 3-86 13-94 (104)
233 1fj7_A Nucleolin RBD1, protein 99.6 6.8E-17 2.3E-21 136.9 3.3 82 3-85 15-97 (101)
234 2err_A Ataxin-2-binding protei 99.6 4.7E-16 1.6E-20 134.2 8.5 80 2-83 26-107 (109)
235 2dgt_A RNA-binding protein 30; 99.6 1.9E-15 6.6E-20 125.8 11.9 78 102-187 7-85 (92)
236 1wel_A RNA-binding protein 12; 99.6 2.2E-16 7.6E-21 139.2 6.5 83 102-185 22-105 (124)
237 1x4d_A Matrin 3; structural ge 99.6 6.6E-16 2.3E-20 132.3 9.2 78 103-186 13-94 (102)
238 2fc8_A NCL protein; structure 99.6 6.2E-16 2.1E-20 131.1 8.9 81 3-86 13-95 (102)
239 1wf1_A RNA-binding protein RAL 99.6 1E-15 3.4E-20 131.9 10.3 76 103-186 25-102 (110)
240 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.6E-15 5.6E-20 135.4 11.8 81 101-181 59-140 (140)
241 3r27_A HnRNP L, heterogeneous 99.6 1.3E-15 4.6E-20 129.8 10.6 77 103-185 19-98 (100)
242 2dgu_A Heterogeneous nuclear r 99.6 1.7E-15 5.9E-20 128.9 11.1 78 3-88 9-88 (103)
243 2hgm_A HNRPF protein, heteroge 99.6 2.2E-16 7.6E-21 140.4 5.7 83 102-186 39-123 (126)
244 1why_A Hypothetical protein ri 99.6 1.1E-15 3.9E-20 128.5 9.7 79 102-186 14-95 (97)
245 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.2E-15 4E-20 141.3 10.7 84 3-86 70-155 (165)
246 3r27_A HnRNP L, heterogeneous 99.6 1.7E-15 5.7E-20 129.2 10.6 76 3-84 19-98 (100)
247 2wbr_A GW182, gawky, LD47780P; 99.6 8.3E-16 2.8E-20 127.6 8.4 72 4-81 6-79 (89)
248 2dnp_A RNA-binding protein 14; 99.6 2.3E-15 7.7E-20 124.9 11.1 78 102-187 6-84 (90)
249 2hvz_A Splicing factor, argini 99.6 1.2E-15 4.3E-20 129.1 9.6 77 106-187 1-78 (101)
250 2cpd_A Apobec-1 stimulating pr 99.6 3.5E-15 1.2E-19 126.0 12.3 78 102-187 12-92 (99)
251 1x4g_A Nucleolysin TIAR; struc 99.6 2.1E-15 7.2E-20 129.7 11.1 80 103-188 23-103 (109)
252 2cpj_A Non-POU domain-containi 99.6 2E-15 7E-20 127.4 10.8 79 102-186 12-91 (99)
253 2nlw_A Eukaryotic translation 99.6 8E-16 2.7E-20 131.7 8.3 79 4-84 14-101 (105)
254 1x4g_A Nucleolysin TIAR; struc 99.6 1.9E-15 6.6E-20 129.9 10.6 78 3-86 23-102 (109)
255 2lcw_A RNA-binding protein FUS 99.4 4.1E-17 1.4E-21 142.0 0.0 85 2-86 4-98 (116)
256 2lcw_A RNA-binding protein FUS 99.4 4.2E-17 1.4E-21 142.0 0.0 85 103-187 5-98 (116)
257 1why_A Hypothetical protein ri 99.6 1.5E-15 5.1E-20 127.8 9.5 76 3-84 15-94 (97)
258 2e5g_A U6 snRNA-specific termi 99.6 2.1E-15 7.3E-20 126.2 10.4 81 103-189 6-87 (94)
259 2e5j_A Methenyltetrahydrofolat 99.6 2.2E-15 7.4E-20 126.9 10.3 79 103-186 17-96 (97)
260 2xs2_A Deleted in azoospermia- 99.6 7.8E-16 2.7E-20 130.6 7.5 83 103-187 7-89 (102)
261 1x4d_A Matrin 3; structural ge 99.6 1.1E-15 3.7E-20 131.0 8.2 77 3-85 13-94 (102)
262 2krb_A Eukaryotic translation 99.6 7.7E-16 2.6E-20 125.3 6.9 71 5-77 1-80 (81)
263 3d2w_A TAR DNA-binding protein 99.6 1.4E-15 4.8E-20 126.6 8.7 78 3-85 9-86 (89)
264 2dha_A FLJ20171 protein; RRM d 99.6 4.6E-16 1.6E-20 137.7 6.0 83 103-186 21-107 (123)
265 2e5g_A U6 snRNA-specific termi 99.6 2.8E-15 9.5E-20 125.5 10.4 78 3-85 6-84 (94)
266 2dgt_A RNA-binding protein 30; 99.6 2.7E-15 9.1E-20 125.0 10.2 77 2-86 7-85 (92)
267 2nlw_A Eukaryotic translation 99.6 2E-15 6.7E-20 129.3 9.6 82 103-186 13-102 (105)
268 2la4_A Nuclear and cytoplasmic 99.6 1.5E-15 5E-20 128.6 8.4 75 3-83 25-101 (101)
269 2jvr_A Nucleolar protein 3; RN 99.6 1.7E-15 5.8E-20 131.7 8.8 79 103-185 26-106 (111)
270 2cpj_A Non-POU domain-containi 99.6 1.6E-15 5.6E-20 128.0 8.5 77 3-85 13-91 (99)
271 2cpx_A Hypothetical protein FL 99.6 4.1E-16 1.4E-20 135.1 4.8 84 3-86 23-108 (115)
272 1fjc_A Nucleolin RBD2, protein 99.6 2.1E-15 7.2E-20 126.3 9.0 80 103-187 14-94 (96)
273 2lmi_A GRSF-1, G-rich sequence 99.6 4.2E-16 1.4E-20 134.0 4.5 83 102-185 8-93 (107)
274 2jvo_A Nucleolar protein 3; nu 99.6 2.6E-15 8.8E-20 129.5 9.3 79 101-187 27-106 (108)
275 2ytc_A PRE-mRNA-splicing facto 99.6 5E-15 1.7E-19 121.1 10.6 75 102-182 9-85 (85)
276 2cqh_A IGF-II mRNA-binding pro 99.6 2.8E-15 9.4E-20 125.0 9.2 79 103-188 6-87 (93)
277 1wf0_A TDP-43, TAR DNA-binding 99.6 1.2E-15 4E-20 126.1 6.7 79 3-86 3-81 (88)
278 2e5j_A Methenyltetrahydrofolat 99.6 2.4E-15 8.2E-20 126.6 8.8 77 3-84 17-95 (97)
279 2dnl_A Cytoplasmic polyadenyla 99.6 2.6E-15 8.9E-20 130.4 9.1 80 3-83 6-88 (114)
280 3beg_B Splicing factor, argini 99.6 1.9E-15 6.5E-20 131.7 8.3 79 103-188 14-98 (115)
281 2ytc_A PRE-mRNA-splicing facto 99.6 3.4E-15 1.1E-19 122.1 9.3 74 2-81 9-85 (85)
282 2dnp_A RNA-binding protein 14; 99.6 3.6E-15 1.2E-19 123.6 9.5 76 2-85 6-83 (90)
283 2a3j_A U1 small nuclear ribonu 99.6 4.2E-15 1.5E-19 132.3 10.5 81 103-186 27-112 (127)
284 2e44_A Insulin-like growth fac 99.6 4.1E-15 1.4E-19 124.6 9.7 82 101-186 11-94 (96)
285 2wbr_A GW182, gawky, LD47780P; 99.6 3E-15 1E-19 124.2 8.5 72 105-182 7-79 (89)
286 2jvr_A Nucleolar protein 3; RN 99.6 1.9E-15 6.6E-20 131.4 7.8 77 3-83 26-105 (111)
287 1whx_A Hypothetical protein ri 99.6 1.4E-15 4.8E-20 131.8 6.5 77 2-84 7-85 (111)
288 1x4f_A Matrin 3; structural ge 99.6 2.2E-15 7.4E-20 131.2 7.7 78 3-86 23-105 (112)
289 2la4_A Nuclear and cytoplasmic 99.6 2.9E-15 9.9E-20 126.8 8.3 76 103-184 25-101 (101)
290 1x4f_A Matrin 3; structural ge 99.6 3.6E-15 1.2E-19 129.8 9.0 80 102-187 22-105 (112)
291 1fjc_A Nucleolin RBD2, protein 99.6 1.8E-15 6E-20 126.8 6.8 79 2-85 13-93 (96)
292 2jvo_A Nucleolar protein 3; nu 99.6 5E-15 1.7E-19 127.7 9.8 76 2-85 28-105 (108)
293 4f02_A Polyadenylate-binding p 99.6 6.1E-15 2.1E-19 141.6 11.4 83 103-185 13-96 (213)
294 2kvi_A Nuclear polyadenylated 99.6 2.5E-15 8.6E-20 126.3 7.6 77 103-187 8-86 (96)
295 2e44_A Insulin-like growth fac 99.6 3.1E-15 1.1E-19 125.3 8.1 77 4-84 14-93 (96)
296 2cpd_A Apobec-1 stimulating pr 99.6 1E-14 3.5E-19 123.0 11.3 75 3-85 13-91 (99)
297 1nu4_A U1A RNA binding domain; 99.6 2.4E-15 8.1E-20 126.1 7.3 80 3-85 6-91 (97)
298 2a3j_A U1 small nuclear ribonu 99.6 3.4E-15 1.2E-19 132.9 8.7 82 3-87 27-114 (127)
299 2cqh_A IGF-II mRNA-binding pro 99.6 2.5E-15 8.7E-20 125.2 7.4 77 3-86 6-86 (93)
300 1l3k_A Heterogeneous nuclear r 99.6 7.3E-15 2.5E-19 137.6 11.5 86 102-187 10-95 (196)
301 3d2w_A TAR DNA-binding protein 99.6 2.8E-15 9.7E-20 124.8 7.4 79 102-186 8-86 (89)
302 2f3j_A RNA and export factor b 99.6 3.9E-15 1.3E-19 139.8 9.2 81 4-85 87-169 (177)
303 1x5p_A Negative elongation fac 99.6 2.2E-14 7.4E-19 120.7 12.7 78 102-187 12-90 (97)
304 2xnq_A Nuclear polyadenylated 99.6 1.1E-14 3.6E-19 123.1 10.8 76 102-185 19-96 (97)
305 2f3j_A RNA and export factor b 99.6 9.6E-15 3.3E-19 137.1 11.4 85 101-186 84-169 (177)
306 1wg1_A KIAA1579 protein, homol 99.6 4.4E-15 1.5E-19 122.8 8.0 74 3-83 3-78 (88)
307 1wf0_A TDP-43, TAR DNA-binding 99.6 2.3E-15 8E-20 124.2 6.2 80 103-188 3-82 (88)
308 1nu4_A U1A RNA binding domain; 99.6 3.2E-15 1.1E-19 125.3 6.9 82 102-186 5-91 (97)
309 3md3_A Nuclear and cytoplasmic 99.6 1.2E-14 4.2E-19 131.9 11.1 80 3-82 85-166 (166)
310 2cjk_A Nuclear polyadenylated 99.6 3.7E-15 1.3E-19 136.1 7.6 81 4-84 86-167 (167)
311 2qfj_A FBP-interacting repress 99.6 1.4E-14 4.6E-19 137.9 11.7 83 3-85 123-207 (216)
312 2kvi_A Nuclear polyadenylated 99.6 5.9E-15 2E-19 124.0 8.1 76 3-86 8-86 (96)
313 1wf1_A RNA-binding protein RAL 99.6 8.3E-15 2.8E-19 126.1 9.1 73 4-84 26-101 (110)
314 2xnq_A Nuclear polyadenylated 99.6 1.5E-14 5E-19 122.2 10.4 73 3-83 20-95 (97)
315 2krb_A Eukaryotic translation 99.5 3.8E-15 1.3E-19 121.2 6.1 71 106-178 2-80 (81)
316 2dnl_A Cytoplasmic polyadenyla 99.5 5.5E-15 1.9E-19 128.4 7.5 81 103-185 6-89 (114)
317 3lqv_A PRE-mRNA branch site pr 99.5 9.6E-15 3.3E-19 126.5 8.9 81 103-186 6-87 (115)
318 1fxl_A Paraneoplastic encephal 99.5 2.1E-14 7.2E-19 130.5 11.3 82 105-186 2-84 (167)
319 3beg_B Splicing factor, argini 99.5 7E-15 2.4E-19 128.1 7.7 74 3-83 14-94 (115)
320 2i2y_A Fusion protein consists 99.5 9.9E-15 3.4E-19 132.6 9.0 77 3-84 71-149 (150)
321 1b7f_A Protein (SXL-lethal pro 99.5 1.8E-14 6.3E-19 131.4 10.5 84 104-187 2-86 (168)
322 2hzc_A Splicing factor U2AF 65 99.5 1.3E-14 4.6E-19 118.9 8.6 72 2-79 3-86 (87)
323 2yh0_A Splicing factor U2AF 65 99.5 2E-14 6.7E-19 134.9 10.4 83 3-85 112-196 (198)
324 2voo_A Lupus LA protein; RNA-b 99.5 2E-14 6.9E-19 136.7 10.2 81 104-185 108-188 (193)
325 1sjr_A Polypyrimidine tract-bi 99.5 3.6E-14 1.2E-18 131.3 11.5 81 102-186 43-126 (164)
326 1x5p_A Negative elongation fac 99.5 4.7E-14 1.6E-18 118.6 11.1 75 3-85 13-89 (97)
327 2g4b_A Splicing factor U2AF 65 99.5 2.3E-14 8E-19 131.4 9.7 78 4-81 93-172 (172)
328 1wg1_A KIAA1579 protein, homol 99.5 2E-14 6.8E-19 118.8 8.1 75 104-185 4-79 (88)
329 1sjr_A Polypyrimidine tract-bi 99.5 5.3E-14 1.8E-18 130.2 11.5 77 5-85 46-126 (164)
330 3egn_A RNA-binding protein 40; 99.5 4.8E-15 1.6E-19 133.6 4.3 83 3-85 43-132 (143)
331 1whx_A Hypothetical protein ri 99.5 2.6E-14 8.8E-19 123.8 8.6 77 104-186 9-86 (111)
332 3egn_A RNA-binding protein 40; 99.5 1E-14 3.5E-19 131.5 6.0 86 102-187 42-133 (143)
333 3pgw_S U1-70K; protein-RNA com 99.5 3.5E-14 1.2E-18 151.3 10.8 82 4-85 101-184 (437)
334 2cq2_A Hypothetical protein LO 99.5 4E-14 1.4E-18 123.5 8.9 79 103-187 23-109 (114)
335 2j8a_A Histone-lysine N-methyl 99.5 2.9E-14 1E-18 126.1 7.3 76 6-81 3-94 (136)
336 2bz2_A Negative elongation fac 99.5 5.3E-14 1.8E-18 123.9 9.0 77 102-186 36-113 (121)
337 2j8a_A Histone-lysine N-methyl 99.5 5E-14 1.7E-18 124.6 8.6 77 106-182 3-94 (136)
338 3zzy_A Polypyrimidine tract-bi 99.5 1.1E-13 3.6E-18 123.6 10.8 79 103-186 26-108 (130)
339 2cq2_A Hypothetical protein LO 99.5 4.8E-14 1.6E-18 123.0 8.0 76 3-84 23-107 (114)
340 2voo_A Lupus LA protein; RNA-b 99.5 9E-14 3.1E-18 132.2 10.6 80 4-84 108-188 (193)
341 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-13 5.1E-18 122.6 11.3 76 6-86 29-109 (130)
342 2e5i_A Heterogeneous nuclear r 99.5 2.2E-13 7.5E-18 120.7 11.9 78 103-186 23-104 (124)
343 2hzc_A Splicing factor U2AF 65 99.5 1.2E-13 4.2E-18 113.1 8.6 71 103-180 4-86 (87)
344 2pe8_A Splicing factor 45; RRM 99.5 1.9E-13 6.5E-18 117.5 10.0 82 2-83 5-94 (105)
345 2e5i_A Heterogeneous nuclear r 99.5 3.7E-13 1.3E-17 119.2 11.5 73 7-85 27-104 (124)
346 3nmr_A Cugbp ELAV-like family 99.4 2.1E-13 7E-18 125.0 9.8 83 104-186 2-90 (175)
347 2pe8_A Splicing factor 45; RRM 99.4 3.5E-13 1.2E-17 115.8 10.3 82 103-184 6-94 (105)
348 2diu_A KIAA0430 protein; struc 99.4 2E-13 6.8E-18 114.4 8.3 74 104-187 7-87 (96)
349 2bz2_A Negative elongation fac 99.4 2.3E-13 7.8E-18 119.8 8.9 76 3-86 37-114 (121)
350 1fje_B Nucleolin RBD12, protei 99.4 2.8E-13 9.7E-18 124.8 8.8 76 3-83 97-174 (175)
351 3tyt_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 128.9 9.9 78 104-186 3-82 (205)
352 2dit_A HIV TAT specific factor 99.4 1.3E-12 4.6E-17 112.9 12.2 84 101-188 11-106 (112)
353 2diu_A KIAA0430 protein; struc 99.4 8.5E-13 2.9E-17 110.6 9.6 74 4-87 7-88 (96)
354 3u1l_A PRE-mRNA-splicing facto 99.4 3.9E-13 1.3E-17 131.9 8.8 79 2-86 131-232 (240)
355 3pgw_A U1-A; protein-RNA compl 99.4 1.1E-12 3.7E-17 130.5 11.0 82 102-186 6-92 (282)
356 2dit_A HIV TAT specific factor 99.4 2.7E-12 9.2E-17 111.0 10.0 80 3-86 13-105 (112)
357 2adc_A Polypyrimidine tract-bi 99.3 1.6E-12 5.6E-17 126.0 9.4 79 103-186 32-112 (229)
358 3u1l_A PRE-mRNA-splicing facto 99.3 1.1E-12 3.8E-17 128.7 8.0 78 103-186 132-231 (240)
359 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.3E-11 4.5E-16 105.1 11.3 68 115-188 27-94 (100)
360 1qm9_A Polypyrimidine tract-bi 99.3 2.7E-12 9.1E-17 120.9 7.5 77 105-186 3-81 (198)
361 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.5E-11 5E-16 104.8 11.3 78 3-85 8-92 (100)
362 3sde_A Paraspeckle component 1 99.3 5.7E-12 2E-16 124.6 10.1 82 3-85 94-181 (261)
363 3v4m_A Splicing factor U2AF 65 99.3 3.9E-12 1.3E-16 109.2 7.6 82 103-184 3-97 (105)
364 3v4m_A Splicing factor U2AF 65 99.3 4.2E-12 1.4E-16 109.0 7.5 81 3-83 3-97 (105)
365 1jmt_A Splicing factor U2AF 35 99.2 2.8E-12 9.7E-17 109.9 4.0 70 10-80 20-103 (104)
366 3ue2_A Poly(U)-binding-splicin 99.2 1.6E-11 5.6E-16 107.7 8.7 79 4-82 19-108 (118)
367 1jmt_A Splicing factor U2AF 35 99.2 4.1E-12 1.4E-16 108.9 4.4 71 110-181 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.2 2.1E-11 7.3E-16 106.9 8.7 80 104-183 19-108 (118)
369 3tht_A Alkylated DNA repair pr 99.1 2.7E-10 9.1E-15 117.4 10.9 109 2-129 15-132 (345)
370 3tht_A Alkylated DNA repair pr 99.0 3.4E-10 1.2E-14 116.6 9.4 75 102-182 15-97 (345)
371 3s6e_A RNA-binding protein 39; 99.0 3.9E-10 1.3E-14 98.2 8.3 78 103-184 5-93 (114)
372 3s6e_A RNA-binding protein 39; 99.0 7.6E-10 2.6E-14 96.4 8.1 78 4-85 6-95 (114)
373 1owx_A Lupus LA protein, SS-B, 98.9 2.3E-09 7.9E-14 94.2 6.8 77 3-85 16-98 (121)
374 1owx_A Lupus LA protein, SS-B, 98.8 7.3E-09 2.5E-13 90.9 8.8 78 99-182 12-94 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.8 6.3E-09 2.2E-13 86.3 7.8 73 104-184 6-86 (91)
376 2dnr_A Synaptojanin-1; RRM dom 98.7 3.9E-08 1.3E-12 81.6 8.4 72 4-83 6-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.6 2.8E-08 9.7E-13 82.9 5.8 73 103-183 13-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.6 2.4E-07 8.2E-12 89.0 11.3 67 117-183 141-212 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.5 1.2E-07 4E-12 79.2 5.4 71 4-82 14-94 (95)
380 3dxb_A Thioredoxin N-terminall 98.5 2.3E-07 7.9E-12 89.1 8.3 66 17-82 141-212 (222)
381 2dhx_A Poly (ADP-ribose) polym 98.4 2.3E-06 7.8E-11 72.3 10.9 88 3-118 6-99 (104)
382 2l9w_A U4/U6 snRNA-associated- 98.2 5.2E-06 1.8E-10 70.8 9.4 71 104-180 20-96 (117)
383 2l9w_A U4/U6 snRNA-associated- 98.1 6.4E-06 2.2E-10 70.2 8.3 72 3-80 19-97 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.9 8.3E-05 2.8E-09 62.8 10.2 75 104-186 7-86 (104)
385 1uw4_A UPF3X; nonsense mediate 97.1 0.00091 3.1E-08 55.5 6.7 66 6-71 2-71 (91)
386 1wey_A Calcipressin 1; structu 97.1 0.0025 8.5E-08 53.9 9.0 76 104-185 4-85 (104)
387 1wey_A Calcipressin 1; structu 97.0 0.0018 6.1E-08 54.8 7.8 73 5-83 5-84 (104)
388 1wwh_A Nucleoporin 35, nucleop 97.0 0.0023 7.7E-08 55.6 8.0 73 4-83 23-97 (119)
389 1whv_A Poly(A)-specific ribonu 96.9 0.0021 7.3E-08 53.6 7.3 58 101-167 12-69 (100)
390 1whv_A Poly(A)-specific ribonu 96.8 0.002 6.8E-08 53.8 6.4 52 4-64 15-66 (100)
391 1wwh_A Nucleoporin 35, nucleop 96.6 0.0059 2E-07 53.0 8.1 73 103-182 22-95 (119)
392 1uw4_A UPF3X; nonsense mediate 96.3 0.012 4.1E-07 48.7 7.7 63 106-168 2-66 (91)
393 3ctr_A Poly(A)-specific ribonu 96.1 0.0057 2E-07 51.2 4.9 55 104-167 5-59 (101)
394 3ctr_A Poly(A)-specific ribonu 96.0 0.0063 2.2E-07 50.9 4.6 51 5-64 6-56 (101)
395 3p3d_A Nucleoporin 53; structu 95.9 0.0047 1.6E-07 54.4 3.6 81 2-83 4-99 (132)
396 2l08_A Regulator of nonsense t 95.7 0.0056 1.9E-07 51.2 3.0 67 4-70 8-78 (97)
397 3pq1_A Poly(A) RNA polymerase; 95.2 0.0078 2.7E-07 64.0 2.8 55 4-64 52-106 (464)
398 3pq1_A Poly(A) RNA polymerase; 94.5 0.017 5.8E-07 61.4 3.3 56 105-166 53-108 (464)
399 3p3d_A Nucleoporin 53; structu 93.8 0.066 2.3E-06 47.1 5.0 78 105-183 7-98 (132)
400 2l08_A Regulator of nonsense t 93.2 0.055 1.9E-06 45.1 3.3 65 104-168 8-74 (97)
401 3d45_A Poly(A)-specific ribonu 84.0 1.9 6.5E-05 46.2 7.5 51 5-64 440-490 (507)
402 3d45_A Poly(A)-specific ribonu 83.8 2.1 7.3E-05 45.8 7.9 58 102-168 437-494 (507)
403 4eyt_A Telomerase associated p 53.2 84 0.0029 25.5 8.7 73 104-184 11-91 (129)
404 4eyt_A Telomerase associated p 49.9 91 0.0031 25.3 8.4 54 3-64 10-63 (129)
405 2cu1_A Mitogen-activated prote 42.6 96 0.0033 25.6 7.6 65 112-184 23-88 (103)
406 2g0c_A ATP-dependent RNA helic 42.5 51 0.0017 25.0 5.9 66 7-81 2-75 (76)
407 2ew9_A Copper-transporting ATP 38.9 1.6E+02 0.0056 24.2 9.8 134 1-168 1-142 (149)
408 3fry_A Probable copper-exporti 34.6 81 0.0028 23.0 5.8 57 105-168 6-62 (73)
409 3lfj_A Manxb, phosphotransfera 33.1 62 0.0021 29.8 5.7 31 47-79 97-127 (187)
410 3lpe_A Putative transcription 31.8 1.9E+02 0.0067 22.9 8.5 42 18-64 21-67 (92)
411 4go7_X Aspartokinase; transfer 28.1 68 0.0023 29.7 5.1 141 3-175 33-182 (200)
412 2npt_B Mitogen-activated prote 27.4 1.1E+02 0.0038 25.0 5.5 59 112-178 35-94 (100)
413 4e8u_A Putative uncharacterize 26.7 79 0.0027 28.7 5.1 55 7-64 14-80 (172)
414 4e8u_A Putative uncharacterize 26.5 1E+02 0.0035 28.0 5.8 57 107-166 14-82 (172)
415 1i4w_A Mitochondrial replicati 25.1 2E+02 0.0067 29.0 8.3 22 7-28 144-165 (353)
416 3fut_A Dimethyladenosine trans 25.0 61 0.0021 31.3 4.4 42 6-64 111-152 (271)
417 2jrh_A Mitogen-activated prote 24.9 1.3E+02 0.0044 24.3 5.4 64 112-183 19-83 (94)
418 2qyc_A Ferredoxin-like protein 24.6 1.5E+02 0.0053 23.6 6.2 55 107-162 7-71 (103)
419 2c60_A Human mitogen-activated 23.5 1.1E+02 0.0036 25.5 4.7 60 112-179 46-106 (111)
420 3uzu_A Ribosomal RNA small sub 23.2 41 0.0014 32.7 2.7 43 6-64 115-157 (279)
421 1q4r_A Protein AT3G17210; cent 23.0 2.5E+02 0.0087 22.7 7.4 59 106-164 12-81 (112)
422 2exu_A Transcription initiatio 22.4 1.6E+02 0.0054 27.3 6.4 27 146-172 148-174 (200)
423 2hiy_A Hypothetical protein; C 22.2 2.1E+02 0.0072 25.9 7.2 127 6-155 7-144 (183)
424 3j21_T 50S ribosomal protein L 21.6 1.4E+02 0.0049 23.8 5.2 49 12-63 29-79 (86)
425 3ezj_A General secretion pathw 20.4 1.4E+02 0.0049 27.9 5.9 113 14-129 10-133 (241)
426 3lpe_A Putative transcription 20.3 1.8E+02 0.0062 23.1 5.7 23 146-168 49-71 (92)
427 3bgu_A Ferredoxin-like protein 20.2 2.1E+02 0.0073 23.6 6.4 56 106-162 23-88 (116)
428 1tr0_A Stable protein 1; plant 20.2 1.9E+02 0.0065 23.3 6.0 57 106-162 10-79 (108)
429 3j21_T 50S ribosomal protein L 20.1 2.9E+02 0.01 22.0 6.7 56 109-167 26-83 (86)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.7e-35 Score=276.80 Aligned_cols=177 Identities=38% Similarity=0.738 Sum_probs=153.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++.+.|+++.|.|+++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 56799999999999999999999999999999999999999999999999999999999999 88899999999999987
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009916 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
++...... ......++|||.|||.++|+++|+++|++||.|+.|.|+.++.+++++|||||+|.++++|+
T Consensus 91 ~~~~~~~~----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 91 SREDSQRP----------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp C---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccccccc----------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 65443211 12245689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccCCeEEEEEEcCCCCCCCC
Q 009916 162 RVLHKTFHELNGKMVEVKRAVPKEFSPG 189 (522)
Q Consensus 162 ~Al~~~~~~l~Gr~I~V~~a~pk~~~~~ 189 (522)
+||+++.+.|+|++|+|+++.+++....
T Consensus 161 ~A~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 161 KIVIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHCSCCEETTEECEEEECC-------
T ss_pred HHHHhCCcEECCEEEEEEecCChhHhcc
Confidence 9999877999999999999999887543
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=9.3e-35 Score=267.21 Aligned_cols=167 Identities=47% Similarity=0.960 Sum_probs=154.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHhcccccCCeEEEEeeccC
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~n~~~i~Gr~I~V~~a~~ 82 (522)
+++++|||+|||+++||++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+.+.+.++++.|.|.++.+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 47899999999999999999999999999999999999989999999999999999999999777899999999998876
Q ss_pred CccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHH
Q 009916 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (522)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~ 162 (522)
+... ...++|||+|||.++++++|+++|++||.|++|+|+.++.+++++|||||+|.++++|++
T Consensus 81 ~~~~----------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 81 RDEQ----------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp HHHH----------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred hhhc----------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 5432 235689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCeEEEEEEcCCCC
Q 009916 163 VLHKTFHELNGKMVEVKRAVPKE 185 (522)
Q Consensus 163 Al~~~~~~l~Gr~I~V~~a~pk~ 185 (522)
|+++....|+|++|+|+++.||+
T Consensus 145 A~~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 145 VCQNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHCSEECSSSSCEEEEECCCCC
T ss_pred HHhCCCEEeCCeEEEEeecCCCC
Confidence 99843389999999999999874
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1e-33 Score=273.19 Aligned_cols=167 Identities=28% Similarity=0.479 Sum_probs=152.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeecc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~ 81 (522)
..++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++...+.++.|.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 5689999999999999999999999999999999999999999999999999999999999 89999999999999886
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009916 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
....... ...++|||+|||+++|+++|+++|++||.|++|+|++|+. .+||||||+|.++++|+
T Consensus 94 ~~~~~~~--------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 94 RDPSLRK--------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAE 157 (213)
T ss_dssp CCTHHHH--------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHH
T ss_pred ccccccc--------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHH
Confidence 5543221 1346899999999999999999999999999999999864 47999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCCC
Q 009916 162 RVLHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
+||++++ .+|+|++|+|++++++.+
T Consensus 158 ~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 158 RAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHHHHTTCEETTEECEEEECCCHHH
T ss_pred HHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 9999888 899999999999998754
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.2e-33 Score=270.55 Aligned_cols=180 Identities=21% Similarity=0.475 Sum_probs=156.3
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeecc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~ 81 (522)
+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|.+++|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999999999988999999999999999999999 89999999999998877
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009916 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
............ .......++|||.|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|.++++|+
T Consensus 107 ~~~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 107 NIGQAQPIIDQL-----AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp CCGGGHHHHHHH-----HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccccchhhhhh-----hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 654322111000 001235679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCCCCC
Q 009916 162 RVLHKTF-HELNGKMVEVKRAVPKEFSP 188 (522)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~pk~~~~ 188 (522)
+|++.++ ..|+|++|+|++++++....
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999888 89999999999999876544
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-33 Score=252.61 Aligned_cols=163 Identities=23% Similarity=0.464 Sum_probs=150.7
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeeccCC
Q 009916 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~~~ 83 (522)
|+|||+|||+++|+++|+++|++||+|.+|+|++++. ++++|||||+|.++++|++|+ +++..+.+++|.|+++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999975 789999999999999999999 8999999999999998665
Q ss_pred ccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHH
Q 009916 84 DDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163 (522)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~A 163 (522)
... .....++|||.|||..+++++|+++|++||.|+++.+++++.+++++|+|||+|.++++|++|
T Consensus 80 ~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 80 QQS--------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp CCC--------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred CCC--------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 431 224678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-CccCCeEEEEEEcCC
Q 009916 164 LHKTF-HELNGKMVEVKRAVP 183 (522)
Q Consensus 164 l~~~~-~~l~Gr~I~V~~a~p 183 (522)
++.++ ..|+|++|+|++|++
T Consensus 146 ~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 146 MDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHTTCEETTEECEEEESCC
T ss_pred HHHhCCCccCCcEEEEEecCC
Confidence 99887 899999999999864
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1e-32 Score=253.49 Aligned_cols=162 Identities=23% Similarity=0.437 Sum_probs=151.6
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeecc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~ 81 (522)
..++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ +++..+.+++|.|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4789999999999999999999999999999999999989999999999999999999999 89999999999999987
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009916 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
++... ...++|||.|||..+++++|+++|++||.|+++.+++++.+++++|+|||+|.++++|+
T Consensus 82 ~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 82 PGGES----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CCSST----------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCccc----------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 65421 35679999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHhcC-CccCC--eEEEEEEc
Q 009916 162 RVLHKTF-HELNG--KMVEVKRA 181 (522)
Q Consensus 162 ~Al~~~~-~~l~G--r~I~V~~a 181 (522)
+|++.++ ..|.+ ++|+|++|
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 9999888 88988 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.1e-32 Score=250.46 Aligned_cols=161 Identities=27% Similarity=0.520 Sum_probs=149.7
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeeccC
Q 009916 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~~ 82 (522)
.++|||+|||+++||++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ +++..+.+++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 689999999999999999999999999999999999989999999999999999999999 899999999999999876
Q ss_pred CccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHH
Q 009916 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (522)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~ 162 (522)
.... ...++|||.|||..+++++|+++|++||.|++++++.++.+++++|+|||+|.++++|++
T Consensus 82 ~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 82 SSAS----------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCGG----------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccc----------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 5432 245789999999999999999999999999999999999899999999999999999999
Q ss_pred HHHhcC-CccCCeE--EEEEEc
Q 009916 163 VLHKTF-HELNGKM--VEVKRA 181 (522)
Q Consensus 163 Al~~~~-~~l~Gr~--I~V~~a 181 (522)
|++.++ ..|.|+. |+|++|
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 999888 8999975 888775
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=1e-31 Score=248.04 Aligned_cols=164 Identities=24% Similarity=0.432 Sum_probs=144.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCC--CcccEEEEEecCHHHHHHHH--hcccccC---CeEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATG--RARGFGFVVFADPAVAERVI--MDKHMID---GRTV 75 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg--~srG~aFVeF~~~e~A~kAl--~n~~~i~---Gr~I 75 (522)
++.++|||+|||+++||++|+++|++||+|.+|+|++++.++ +++|||||+|.++++|++|+ +++..+. .+.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 478999999999999999999999999999999999999876 89999999999999999999 7776665 5677
Q ss_pred EEeeccCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEec
Q 009916 76 EAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155 (522)
Q Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~ 155 (522)
.+.++.++... ....++|||+|||+++|+++|+++|++||.|++|+|++++. ++++|||||+|.
T Consensus 81 ~~~~~~~~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~ 144 (175)
T 3nmr_A 81 QMKPADSEKNN---------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFT 144 (175)
T ss_dssp EEEECGGGCCS---------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEES
T ss_pred EEccccccccc---------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEEC
Confidence 77766543321 13567899999999999999999999999999999999975 889999999999
Q ss_pred CHHHHHHHHHhcC-CccC---CeEEEEEEcC
Q 009916 156 SEEAVDRVLHKTF-HELN---GKMVEVKRAV 182 (522)
Q Consensus 156 s~e~A~~Al~~~~-~~l~---Gr~I~V~~a~ 182 (522)
++++|++|++.++ ..+. +++|+|++|.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999988 5565 4999999974
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=4.3e-31 Score=249.33 Aligned_cols=178 Identities=20% Similarity=0.416 Sum_probs=149.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhcc----C-------CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hccccc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRY----G-------EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMI 70 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~----G-------~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i 70 (522)
+.+++|||+|||+++||++|+++|++| + +|.++++ ++++|||||+|.++++|++|| ++++.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 468999999999999999999999999 5 5665555 345799999999999999999 999999
Q ss_pred CCeEEEEeeccCCcccccccccc----CCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCc
Q 009916 71 DGRTVEAKKAVPRDDQNMLNRNT----SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRP 146 (522)
Q Consensus 71 ~Gr~I~V~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~ 146 (522)
++++|.|+++.+........... ............++|||+|||..+++++|+++|++||.|++|.|++++.++++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 99999999987654332211111 01111223356789999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCC
Q 009916 147 RGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 147 rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
+|||||+|.++++|++|++.++ ..|+|++|+|++++++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999887 899999999999998764
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=7.7e-31 Score=242.15 Aligned_cols=158 Identities=21% Similarity=0.451 Sum_probs=143.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhcc----C-------CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hccccc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRY----G-------EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMI 70 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~----G-------~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i 70 (522)
++.++|||+|||+++||++|+++|++| | +|.++++.+ ++|||||+|.++++|++|+ ++++.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 478999999999999999999999999 6 777777754 4789999999999999999 999999
Q ss_pred CCeEEEEeeccCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEE
Q 009916 71 DGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFG 150 (522)
Q Consensus 71 ~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~a 150 (522)
++++|.|+++.+... ....++|||+|||.++|+++|+++|++||+|++|.|++++.+++++|||
T Consensus 76 ~g~~i~v~~~~~~~~----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 139 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 139 (172)
T ss_dssp TTEECEEECCSSCCC----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEE
T ss_pred cCceeeecCCcccCC----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEE
Confidence 999999988654322 1247899999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 151 FITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 151 FVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
||+|.++++|++|++.++ ..|+|++|+|++|.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999887 89999999999973
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.3e-31 Score=246.93 Aligned_cols=163 Identities=22% Similarity=0.350 Sum_probs=144.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++|+++|+++|++|++|.. .++++..+++++|||||+|.++++|++|| ++++.|.+++|.|+++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 57899999999999999999999999998766 44555567889999999999999999999 99999999999999987
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009916 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
++... .....++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|.++++|+
T Consensus 90 ~~~~~--------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 90 GRDSK--------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CSSCS--------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHH
T ss_pred Ccccc--------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHH
Confidence 65432 12357899999999999999999999999987655 566889999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCC
Q 009916 162 RVLHKTF-HELNGKMVEVKRAVPKE 185 (522)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~pk~ 185 (522)
+|++.++ ..|+|++|+|+++.||.
T Consensus 151 ~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 151 KNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHhCCCEECCeEEEEEecCCCC
Confidence 9999888 89999999999998863
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.1e-29 Score=252.24 Aligned_cols=170 Identities=14% Similarity=0.222 Sum_probs=156.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ +++..|++++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45789999999999999999999999999999999999989999999999999999999999 8999999999999998
Q ss_pred cCCccccccccccCCCCCCCCCCCcceeEecCCCCCC-CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHH
Q 009916 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTV-TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (522)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~v-teedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (522)
.++.... .....++|||.|||+++ ++++|+++|++||.|++|+|++++ +++++|+|||+|.++++
T Consensus 173 ~~~~~~~-------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 173 DAGQLTP-------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEM 238 (284)
T ss_dssp CGGGCCT-------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHH
T ss_pred CCCCCCc-------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHH
Confidence 7654321 22467899999999995 999999999999999999999987 58999999999999999
Q ss_pred HHHHHHhcC-CccCCeEEEEEEcCCCCC
Q 009916 160 VDRVLHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 160 A~~Al~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
|++|++.++ ..|.|++|+|+++.++..
T Consensus 239 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 239 AEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999888 899999999999998775
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=4e-29 Score=249.92 Aligned_cols=172 Identities=16% Similarity=0.297 Sum_probs=144.2
Q ss_pred CCCcEEEECCCCCCCCHHHHH----HHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLK----EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~----e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~ 76 (522)
+.+++|||+|||+++|+++|+ ++|++||+|++|+|++ ++++||||||+|.++++|++|| +++..|.+++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 578999999999999999977 8999999999999987 5789999999999999999999 899999999999
Q ss_pred EeeccCCccccccccccC--------------------------------------------------------------
Q 009916 77 AKKAVPRDDQNMLNRNTS-------------------------------------------------------------- 94 (522)
Q Consensus 77 V~~a~~~~~~~~~~~~~~-------------------------------------------------------------- 94 (522)
|+++..+...........
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999866543100000000
Q ss_pred ---------------------------------CCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Q 009916 95 ---------------------------------SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH 141 (522)
Q Consensus 95 ---------------------------------~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~ 141 (522)
...........++|||+|||..+++++|+++|++||.|++|+|+.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 00000122356889999999999999999999999999999999654
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHhcC-CccC-CeEEEEEEcC
Q 009916 142 NTQRPRGFGFITYDSEEAVDRVLHKTF-HELN-GKMVEVKRAV 182 (522)
Q Consensus 142 ~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~-Gr~I~V~~a~ 182 (522)
+|||||+|.++++|++||+.++ ..|. |++|+|++++
T Consensus 244 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 -----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5799999999999999999988 7898 9999999986
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2.7e-29 Score=241.86 Aligned_cols=171 Identities=18% Similarity=0.215 Sum_probs=139.8
Q ss_pred CCcEEEECCCC-CCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 4 DLGKLFIGGIS-WDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 4 d~r~LfVgnLP-~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
+.++|||+||| +++|+++|+++|++||+|.+|+|+++ .||||||+|.++++|++|| ++++.|.+++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 3699999999999999999 9999999999999988
Q ss_pred cCCcccccc----ccc--------cCCCC---------CCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCe--eEEEE
Q 009916 81 VPRDDQNML----NRN--------TSSIH---------SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTI--TDVVV 137 (522)
Q Consensus 81 ~~~~~~~~~----~~~--------~~~~~---------~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V--~~v~i 137 (522)
..+...... ... ....+ ......+.++|||.|||+++||++|+++|++||.| ++|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 644321100 000 00000 00112456789999999999999999999999999 89999
Q ss_pred EecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCe----EEEEEEc
Q 009916 138 MYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK----MVEVKRA 181 (522)
Q Consensus 138 ~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr----~I~V~~a 181 (522)
+.++ ++++|+|||+|+++++|++||+.++ .+|.++ ++.|+++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8775 4567999999999999999999998 788886 5777765
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.8e-29 Score=253.75 Aligned_cols=171 Identities=14% Similarity=0.266 Sum_probs=145.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
+.++|||+|||+++++++|+++|++|| +|.+|+|++++. +++++||||+|.++++|++|+ ++++.|.+++|.|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999876 789999999999999999999 8999999999999999
Q ss_pred cCCccccccccccCCCCCCCCCCCcceeEecCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCC-CCCcceEEEEEecCHH
Q 009916 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHN-TQRPRGFGFITYDSEE 158 (522)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~-vteedL~~~F~~fG~V~~v~i~~d~~-tg~~rG~aFVeF~s~e 158 (522)
.++...... .......++|||.|||.. +|+++|+++|++||.|+.|+|++++. |++++|||||+|.+++
T Consensus 195 ~~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 195 NPLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp CCC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CCCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 876543321 122346789999999999 99999999999999999999999887 6899999999999999
Q ss_pred HHHHHHHhcC-CccCCeEEEEEEcCCCC
Q 009916 159 AVDRVLHKTF-HELNGKMVEVKRAVPKE 185 (522)
Q Consensus 159 ~A~~Al~~~~-~~l~Gr~I~V~~a~pk~ 185 (522)
+|++|| .++ ..|.|++|+|+++++|+
T Consensus 266 ~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 999999 777 89999999999999874
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1e-28 Score=240.76 Aligned_cols=172 Identities=17% Similarity=0.243 Sum_probs=143.8
Q ss_pred CCCcEEEECCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
.++++|||+|||+ ++++++|+++|++||+|++|+|++++ ++||||+|.++++|++|| +++..|.+++|.|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4679999999999 99999999999999999999999875 689999999999999999 899999999999999
Q ss_pred ccCCcccccccccc----------CC---------CCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcC-CeeEEEEEe
Q 009916 80 AVPRDDQNMLNRNT----------SS---------IHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMY 139 (522)
Q Consensus 80 a~~~~~~~~~~~~~----------~~---------~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG-~V~~v~i~~ 139 (522)
+.++.......... .. ........+.++|||.|||..+++++|+++|++|| .|++|+|+.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 87553221110000 00 00011124578999999999999999999999999 999999975
Q ss_pred cCCCCCcceEEEEEecCHHHHHHHHHhcC-CccC-CeEEEEEEcCCC
Q 009916 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN-GKMVEVKRAVPK 184 (522)
Q Consensus 140 d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~-Gr~I~V~~a~pk 184 (522)
+ .+++|||+|.++++|++|++.++ ..|. +++|+|++++++
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3 36899999999999999999888 8999 999999999875
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=4.8e-29 Score=236.36 Aligned_cols=171 Identities=17% Similarity=0.242 Sum_probs=143.5
Q ss_pred CCcEEEECCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 4 DLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 4 d~r~LfVgnLP~-~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
++++|||+|||+ ++++++|+++|++||+|.+|+|++++ +|||||+|.++++|++|+ +++..|.+++|.|+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 579999999999 99999999999999999999998875 689999999999999999 8999999999999998
Q ss_pred cCCcccccccccc-------------------CCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcC-CeeEEEEEec
Q 009916 81 VPRDDQNMLNRNT-------------------SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYD 140 (522)
Q Consensus 81 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG-~V~~v~i~~d 140 (522)
.++.......... ..........+.++|||.|||..+++++|+++|++|| .|++|+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 7653221110000 0000011124578999999999999999999999999 9999999764
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHhcC-CccC-CeEEEEEEcCCC
Q 009916 141 HNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN-GKMVEVKRAVPK 184 (522)
Q Consensus 141 ~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~-Gr~I~V~~a~pk 184 (522)
.+|+|||+|.++++|++|++.++ ..|. +++|+|++++++
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 26899999999999999999888 8899 999999999875
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.5e-28 Score=245.34 Aligned_cols=160 Identities=13% Similarity=0.228 Sum_probs=138.4
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
+++.++|||+|||+++|+++|+++|++||+|.+|+|++++.+ +++||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 357899999999999999999999999999999999998753 5899999999999999999 9999999999999874
Q ss_pred cCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecCHHH
Q 009916 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (522)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (522)
..++|||+|||..+++++|+++|++|| .|.+|.|+.++. ++++|||||+|.++++
T Consensus 116 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 116 -----------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKED 171 (292)
T ss_dssp -----------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHH
T ss_pred -----------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHH
Confidence 357899999999999999999999999 999999999887 7789999999999999
Q ss_pred HHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 009916 160 VDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 160 A~~Al~~~~-~~l~Gr~I~V~~a~pk~~~ 187 (522)
|++|++.++ ..|.+++|.|+++.|+...
T Consensus 172 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 999999777 8999999999999887654
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=9.7e-28 Score=240.09 Aligned_cols=156 Identities=18% Similarity=0.395 Sum_probs=144.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++|| |.+|++ ++++|||||+|.++++|++|+ +++..|.+++|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3679999999999999999999999999 988888 356789999999999999999 7999999999999874
Q ss_pred cCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 009916 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
. ..++|||+|||+++|+++|+++|++||.|..+.|+.++.+++++|||||+|.++++|
T Consensus 93 ~----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 93 P----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp C----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred C----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 2 346899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 009916 161 DRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~pk~~~ 187 (522)
++|++.++ ..|.+++|.|.++.++...
T Consensus 151 ~~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 99998877 8999999999999887653
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=5.2e-28 Score=240.46 Aligned_cols=157 Identities=28% Similarity=0.460 Sum_probs=142.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|.+|+|+++ +|||||+|.++++|++|+ ++++.|.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 35689999999999999999999999999999999653 689999999999999999 8999999999999987
Q ss_pred cCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 009916 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
.+ .++|||+|||..+|+++|+++|++||.|++|.|+.| .+++++|||||+|.++++|
T Consensus 94 ~~----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 94 TH----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp CC----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHH
T ss_pred cc----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHH
Confidence 53 458999999999999999999999999999999999 5799999999999999999
Q ss_pred HHHHHhcC-C-ccC---CeEEEEEEcCCCCCCC
Q 009916 161 DRVLHKTF-H-ELN---GKMVEVKRAVPKEFSP 188 (522)
Q Consensus 161 ~~Al~~~~-~-~l~---Gr~I~V~~a~pk~~~~ 188 (522)
++||+.++ . .+. +++|.|+++.+.....
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQFDDED 183 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCEESSS
T ss_pred HHHHHHhcCCeEEecCCCceEEEeeccccCccC
Confidence 99999984 3 443 9999999998776543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.4e-22 Score=185.78 Aligned_cols=148 Identities=18% Similarity=0.269 Sum_probs=114.6
Q ss_pred EEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcc-cccCCeEEEEeeccCCccccccccccCCCCCCCCCCCcceeEe
Q 009916 34 EAVIMRDRATGRARGFGFVVFADPAVAERVI--MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFV 110 (522)
Q Consensus 34 ~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~-~~i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV 110 (522)
+++|+.+.. +++|||||+|.++++|++|+ ++. ..+++ .+.+........... ..............++|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTE---GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCC-EEEEETTTTEEEEEC---CCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCC-cccccCccccccccc---cccccccccCCCCCCEEEE
Confidence 567888764 69999999999999999999 343 33333 333332222111111 0111112223356789999
Q ss_pred cCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 009916 111 GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 111 gnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~~ 187 (522)
+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++||+.++ ..|.|++|+|++++++...
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999887 8999999999999987543
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=4.5e-21 Score=174.73 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=113.7
Q ss_pred CCcccEEEEEecCHHHHHHHH--h-cccccCCeEEEEeeccCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHH
Q 009916 44 GRARGFGFVVFADPAVAERVI--M-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120 (522)
Q Consensus 44 g~srG~aFVeF~~~e~A~kAl--~-n~~~i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vtee 120 (522)
.+.+|+++|+|.++++|++|+ + +...+++ +|.+.++..+......................++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467999999999999999999 7 8999999 99999887654332222222222233344577899999999999999
Q ss_pred HHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCC
Q 009916 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKE 185 (522)
Q Consensus 121 dL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~ 185 (522)
+|+++|++||.|++|+|+++ ++|||||+|.++++|++||+.++ ..|.|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999876 58899999999999999999877 89999999999998864
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=4.3e-21 Score=167.53 Aligned_cols=108 Identities=21% Similarity=0.437 Sum_probs=73.9
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeecc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~ 81 (522)
..++|||+|||+++||++|+++|++||+|++|+|++++ .++||||||+|.++++|++|| ++++.|++++|.|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999986 458999999999999999999 89999999999999988
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHH
Q 009916 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESD 121 (522)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteed 121 (522)
++........ .......+|||.|||+++|++.
T Consensus 82 ~~~~~~~~~~--------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELG--------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC------------------------------------
T ss_pred Cccccccccc--------cccCCCCceEeCCCCCCccccc
Confidence 7654332111 1123456799999999999874
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=151.96 Aligned_cols=80 Identities=28% Similarity=0.502 Sum_probs=76.7
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++||||||+|.++++|++|+ +++..|++++|.|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999 8999999999999998
Q ss_pred cC
Q 009916 81 VP 82 (522)
Q Consensus 81 ~~ 82 (522)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=7.7e-20 Score=194.95 Aligned_cols=169 Identities=18% Similarity=0.275 Sum_probs=113.4
Q ss_pred HHHHHHhccCCeEEEEEeec----C-CCCCcccEE--EEEecCHHHHHHHH--hcccccCCeEEEEeecc-CCccccccc
Q 009916 21 RLKEYFSRYGEVVEAVIMRD----R-ATGRARGFG--FVVFADPAVAERVI--MDKHMIDGRTVEAKKAV-PRDDQNMLN 90 (522)
Q Consensus 21 eL~e~F~~~G~V~~v~i~~d----~-~tg~srG~a--FVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~-~~~~~~~~~ 90 (522)
.|.++|.++++|..|..+.. + .+....+++ |++|.+++++..++ ++..++..+....+... .+.......
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 38899999999988743322 1 112223333 88887766665554 22211111100000000 000000000
Q ss_pred cccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-C
Q 009916 91 RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H 169 (522)
Q Consensus 91 ~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~ 169 (522)
.............+.++|||+|||+.||+++|+++|++||.|+.|.|+.++.+++++|||||+|.++++|++||++|+ .
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 111111112223467899999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred ccCCeEEEEEEcCCCCCCCC
Q 009916 170 ELNGKMVEVKRAVPKEFSPG 189 (522)
Q Consensus 170 ~l~Gr~I~V~~a~pk~~~~~ 189 (522)
+|.|++|.|+++.++....+
T Consensus 168 ~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred EECCEEEEEEEeCCCCCCCC
Confidence 99999999999998765443
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=9.7e-19 Score=148.83 Aligned_cols=80 Identities=20% Similarity=0.453 Sum_probs=76.8
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
+.++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++||+.++ ..|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999887 89999999999998
Q ss_pred C
Q 009916 183 P 183 (522)
Q Consensus 183 p 183 (522)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 27
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=7e-18 Score=151.32 Aligned_cols=90 Identities=23% Similarity=0.518 Sum_probs=83.2
Q ss_pred CCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEE
Q 009916 99 SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (522)
Q Consensus 99 ~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (522)
.+.....++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ ..|.+++|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3445677899999999999999999999999999999999999999999999999999999999999888 799999999
Q ss_pred EEEcCCCCCCC
Q 009916 178 VKRAVPKEFSP 188 (522)
Q Consensus 178 V~~a~pk~~~~ 188 (522)
|++++++..++
T Consensus 116 v~~a~~~~~~~ 126 (139)
T 1u6f_A 116 VALAASGHQRP 126 (139)
T ss_dssp EEESSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99999876654
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-19 Score=148.60 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=75.8
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--h-cccccCCeEEEEeec
Q 009916 5 LGKLFIGGISWDTDEERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M-DKHMIDGRTVEAKKA 80 (522)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~-n~~~i~Gr~I~V~~a 80 (522)
+++|||+|||+++||++|+++|++|| +|++|+|++++.++++||||||+|.++++|++|| + +...|++++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 8999999999999999999999999999999999 3 456899999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876544
No 29
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=2.8e-18 Score=157.19 Aligned_cols=84 Identities=18% Similarity=0.345 Sum_probs=79.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++ ++|++++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCCC
Q 009916 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
+++..
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87654
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=9.7e-19 Score=146.38 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=77.3
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC--CccCCeEEEEEEc
Q 009916 105 TKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF--HELNGKMVEVKRA 181 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~--~~l~Gr~I~V~~a 181 (522)
+++|||+|||+++||+||+++|++|| +|++|+|++|+.++++||||||+|.++++|++||+.+. ..|+|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999874 4799999999999
Q ss_pred CCCCCC
Q 009916 182 VPKEFS 187 (522)
Q Consensus 182 ~pk~~~ 187 (522)
.|+++.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987653
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=148.76 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=78.7
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||++++|++|+++|++||+|++|+|++++.|+++||||||+|.++++|++|| +|++.|++++|.|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 56789999999999999999999999999999999999999999999999999999999999 8999999999999998
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76544
No 32
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=144.84 Aligned_cols=88 Identities=32% Similarity=0.556 Sum_probs=81.7
Q ss_pred CCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEE
Q 009916 100 PGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (522)
Q Consensus 100 ~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~ 179 (522)
....+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++.+|++++|+|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 34457789999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred EcCCCCCC
Q 009916 180 RAVPKEFS 187 (522)
Q Consensus 180 ~a~pk~~~ 187 (522)
++.++...
T Consensus 92 ~a~~~~~~ 99 (116)
T 2cqd_A 92 LAYLGAKP 99 (116)
T ss_dssp ESTTTCCC
T ss_pred EcccCCCc
Confidence 99876543
No 33
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=9.8e-18 Score=145.61 Aligned_cols=87 Identities=21% Similarity=0.363 Sum_probs=81.3
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ .+|++++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3466899999999999999999999999999999999999999999999999999999999998887 899999999999
Q ss_pred cCCCCCCC
Q 009916 181 AVPKEFSP 188 (522)
Q Consensus 181 a~pk~~~~ 188 (522)
++++...+
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 99887644
No 34
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=142.77 Aligned_cols=85 Identities=41% Similarity=0.777 Sum_probs=80.1
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 357899999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876554
No 35
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-18 Score=141.72 Aligned_cols=87 Identities=46% Similarity=0.943 Sum_probs=80.6
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
..+.++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||++..+.|++++|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999999994448999999999999
Q ss_pred CCCCCCC
Q 009916 182 VPKEFSP 188 (522)
Q Consensus 182 ~pk~~~~ 188 (522)
+++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 9887654
No 36
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.6e-18 Score=155.71 Aligned_cols=123 Identities=16% Similarity=0.242 Sum_probs=82.0
Q ss_pred EEEEEecCHHHHHHHH--hcccccCCeEEEEeeccCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHH
Q 009916 49 FGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126 (522)
Q Consensus 49 ~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F 126 (522)
++|++|++...+.+|+ ++.....++.. +.. ....+...+.++|||+|||+++|+++|+++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~----------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY----------------GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp ------------------------------CCS----------------CCSCSSGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCc----------------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 5677777777777777 44443333221 111 1112233467899999999999999999999
Q ss_pred hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCCC
Q 009916 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFSP 188 (522)
Q Consensus 127 ~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~~~ 188 (522)
++||+|++|+|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|++++++...+
T Consensus 69 ~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 69 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 999999999999999999999999999999999999999888 89999999999999766543
No 37
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=5e-18 Score=157.28 Aligned_cols=137 Identities=13% Similarity=0.208 Sum_probs=79.9
Q ss_pred EEecCHHHHHHHH--hcccccC--CeEEEEeeccCCccccccc----cccCCCCCCCCCCCcceeEecCCCCCCCHHHHH
Q 009916 52 VVFADPAVAERVI--MDKHMID--GRTVEAKKAVPRDDQNMLN----RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123 (522)
Q Consensus 52 VeF~~~e~A~kAl--~n~~~i~--Gr~I~V~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~ 123 (522)
.+|.+.++|+.++ ++..... ++.+....+.......... .............+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999998 4444333 5555444332211000000 000011122234567899999999999999999
Q ss_pred HHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCCC
Q 009916 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFSP 188 (522)
Q Consensus 124 ~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~~~ 188 (522)
++|++||+|+.|.|+.++.+++++|||||+|.++++|++||+.++ ..|.|++|.|.++.++...+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999999999887 89999999999999876544
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.2e-18 Score=140.42 Aligned_cols=85 Identities=31% Similarity=0.578 Sum_probs=80.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999999877 8999999999999
Q ss_pred CCCCCC
Q 009916 182 VPKEFS 187 (522)
Q Consensus 182 ~pk~~~ 187 (522)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 987653
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=142.87 Aligned_cols=88 Identities=26% Similarity=0.403 Sum_probs=82.1
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcCCCCCCC
Q 009916 180 RAVPKEFSP 188 (522)
Q Consensus 180 ~a~pk~~~~ 188 (522)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 999877643
No 40
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=146.29 Aligned_cols=83 Identities=13% Similarity=0.299 Sum_probs=78.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.++ .+|+|++|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCC
Q 009916 182 VPKE 185 (522)
Q Consensus 182 ~pk~ 185 (522)
..++
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7554
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=142.26 Aligned_cols=85 Identities=29% Similarity=0.530 Sum_probs=80.2
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999999999989999999999999999999999 899999999999999
Q ss_pred ccCCccc
Q 009916 80 AVPRDDQ 86 (522)
Q Consensus 80 a~~~~~~ 86 (522)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 42
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=1.5e-17 Score=144.31 Aligned_cols=85 Identities=29% Similarity=0.539 Sum_probs=80.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 57899999999999999999999999999999999999889999999999999999999999 8999999999999999
Q ss_pred cCCcccc
Q 009916 81 VPRDDQN 87 (522)
Q Consensus 81 ~~~~~~~ 87 (522)
.++....
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8775543
No 43
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.9e-18 Score=143.58 Aligned_cols=88 Identities=19% Similarity=0.355 Sum_probs=81.6
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||.++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++||+.++ +.|++++|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999877 89999999999
Q ss_pred EcCCCCCCC
Q 009916 180 RAVPKEFSP 188 (522)
Q Consensus 180 ~a~pk~~~~ 188 (522)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 999776543
No 44
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=140.61 Aligned_cols=85 Identities=25% Similarity=0.467 Sum_probs=80.5
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 567899999999999999999999999999999999999999999999999999999999998888 8999999999999
Q ss_pred CCCCCC
Q 009916 182 VPKEFS 187 (522)
Q Consensus 182 ~pk~~~ 187 (522)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 988754
No 45
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=144.41 Aligned_cols=86 Identities=44% Similarity=0.828 Sum_probs=80.8
Q ss_pred CCCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEe
Q 009916 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~ 78 (522)
|..+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4578899999999999999999999999999999999999989999999999999999999999 89999999999999
Q ss_pred eccCCccc
Q 009916 79 KAVPRDDQ 86 (522)
Q Consensus 79 ~a~~~~~~ 86 (522)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 46
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=142.10 Aligned_cols=87 Identities=24% Similarity=0.437 Sum_probs=81.5
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||.++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcCCCCCC
Q 009916 180 RAVPKEFS 187 (522)
Q Consensus 180 ~a~pk~~~ 187 (522)
+++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99987654
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.7e-18 Score=142.27 Aligned_cols=87 Identities=30% Similarity=0.593 Sum_probs=81.3
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999998887 899999999999
Q ss_pred cCCCCCCC
Q 009916 181 AVPKEFSP 188 (522)
Q Consensus 181 a~pk~~~~ 188 (522)
++++...+
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99877644
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.8e-18 Score=142.84 Aligned_cols=87 Identities=29% Similarity=0.528 Sum_probs=81.5
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 467899999999999999999999999999999999999999999999999999999999999877 8999999999999
Q ss_pred CCCCCCCC
Q 009916 182 VPKEFSPG 189 (522)
Q Consensus 182 ~pk~~~~~ 189 (522)
+++..+..
T Consensus 90 ~~~~~~~~ 97 (102)
T 2cqb_A 90 KPMRIKES 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 49
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=141.80 Aligned_cols=85 Identities=38% Similarity=0.721 Sum_probs=79.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHhcccccCCeEEEEeeccC
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~n~~~i~Gr~I~V~~a~~ 82 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||.+.+.|++++|.|+++.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 56789999999999999999999999999999999999999999999999999999999999778899999999999988
Q ss_pred Ccccc
Q 009916 83 RDDQN 87 (522)
Q Consensus 83 ~~~~~ 87 (522)
+.+..
T Consensus 93 ~~~~~ 97 (103)
T 2cqg_A 93 KQSQD 97 (103)
T ss_dssp TCCCC
T ss_pred CCcCC
Confidence 76543
No 50
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-18 Score=144.34 Aligned_cols=87 Identities=29% Similarity=0.477 Sum_probs=81.2
Q ss_pred CCCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEe
Q 009916 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~ 78 (522)
|..+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4568899999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred eccCCcccc
Q 009916 79 KAVPRDDQN 87 (522)
Q Consensus 79 ~a~~~~~~~ 87 (522)
++.++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998765443
No 51
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1e-17 Score=138.00 Aligned_cols=79 Identities=52% Similarity=1.040 Sum_probs=75.2
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++++.|++++|+|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 467899999999999999999999999999999999999999999999999999999999999 8888999999999875
No 52
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=145.37 Aligned_cols=81 Identities=22% Similarity=0.400 Sum_probs=74.2
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCC--eEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hccc----ccCCe
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGE--VVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKH----MIDGR 73 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~--V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~----~i~Gr 73 (522)
+....+|||+|||+++||++|+++|++||+ |.+|+|++|+.|+++||||||+|.++++|++|| +++. .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 356789999999999999999999999995 679999999999999999999999999999999 6664 58999
Q ss_pred EEEEeeccC
Q 009916 74 TVEAKKAVP 82 (522)
Q Consensus 74 ~I~V~~a~~ 82 (522)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=139.69 Aligned_cols=84 Identities=29% Similarity=0.652 Sum_probs=79.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56899999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 54
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=3.9e-18 Score=140.80 Aligned_cols=83 Identities=23% Similarity=0.550 Sum_probs=78.4
Q ss_pred CCCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEee
Q 009916 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKK 79 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~ 79 (522)
||.+.++|||+|||+++++++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|+ ++++.|++++|+|++
T Consensus 2 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 2 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81 (89)
T ss_dssp HHHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999999989999999999999999999999 999999999999999
Q ss_pred ccCC
Q 009916 80 AVPR 83 (522)
Q Consensus 80 a~~~ 83 (522)
+.+.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8653
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=9.5e-18 Score=137.28 Aligned_cols=81 Identities=30% Similarity=0.495 Sum_probs=77.3
Q ss_pred CCCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEe
Q 009916 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~ 78 (522)
++.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++++.|++++|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4678899999999999999999999999999999999999889999999999999999999999 89999999999999
Q ss_pred ecc
Q 009916 79 KAV 81 (522)
Q Consensus 79 ~a~ 81 (522)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=137.43 Aligned_cols=81 Identities=27% Similarity=0.530 Sum_probs=75.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|+ ++++.|++++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999889999999999999999999999 8999999999999998
Q ss_pred cCC
Q 009916 81 VPR 83 (522)
Q Consensus 81 ~~~ 83 (522)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 57
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=139.96 Aligned_cols=86 Identities=26% Similarity=0.424 Sum_probs=80.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDV-VVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v-~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
.+.++|||+|||.++++++|+++|++||+|++| +|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 999999999999999999999999999999888 899999999999
Q ss_pred cCCCCCCC
Q 009916 181 AVPKEFSP 188 (522)
Q Consensus 181 a~pk~~~~ 188 (522)
+.++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99876543
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=3.3e-17 Score=142.15 Aligned_cols=88 Identities=26% Similarity=0.491 Sum_probs=82.0
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||..+++++|+++|++||.|++|+|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcCCCCCCC
Q 009916 180 RAVPKEFSP 188 (522)
Q Consensus 180 ~a~pk~~~~ 188 (522)
+++++...+
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 999876544
No 59
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=9e-18 Score=145.85 Aligned_cols=84 Identities=25% Similarity=0.466 Sum_probs=79.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 876543
No 60
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.6e-17 Score=135.36 Aligned_cols=80 Identities=28% Similarity=0.530 Sum_probs=76.3
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeeccC
Q 009916 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~~ 82 (522)
+.+|||+|||+++++++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|+ ++++.|++++|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999999999989999999999999999999999 899999999999999987
Q ss_pred Cc
Q 009916 83 RD 84 (522)
Q Consensus 83 ~~ 84 (522)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=142.32 Aligned_cols=88 Identities=35% Similarity=0.744 Sum_probs=81.6
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (522)
...+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+...+.|++++|+|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999933899999999999
Q ss_pred cCCCCCCC
Q 009916 181 AVPKEFSP 188 (522)
Q Consensus 181 a~pk~~~~ 188 (522)
++++...+
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 99887654
No 62
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=142.24 Aligned_cols=98 Identities=27% Similarity=0.446 Sum_probs=83.0
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeeccCC
Q 009916 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~~~ 83 (522)
++|||+|||+++|+++|+++|++||+|++|+|+++ +++||||+|.++++|++|+ ++++.|++++|.|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 6899999999999999999 7999999999999999887
Q ss_pred ccccccccccCCCCCCCCCCCcceeEecCCC
Q 009916 84 DDQNMLNRNTSSIHSSPGPGRTKKIFVGGLA 114 (522)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp 114 (522)
.......... .......+|||++|+
T Consensus 76 ~~~~~~~~~~------~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPP------ARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCC------CSCCCCSCCCSCCCC
T ss_pred CCcccCCCCC------ccccCCCceecCCCC
Confidence 6433221111 122346789999997
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=142.20 Aligned_cols=84 Identities=26% Similarity=0.457 Sum_probs=79.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 56899999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 64
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-17 Score=138.50 Aligned_cols=87 Identities=30% Similarity=0.499 Sum_probs=80.4
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
..+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+. .+.|+|++|+|+++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999984 47899999999999
Q ss_pred CCCCCCCC
Q 009916 182 VPKEFSPG 189 (522)
Q Consensus 182 ~pk~~~~~ 189 (522)
.++.....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cqg_A 91 NSKQSQDS 98 (103)
T ss_dssp CTTCCCCC
T ss_pred CCCCcCCC
Confidence 98876543
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-17 Score=138.64 Aligned_cols=84 Identities=17% Similarity=0.414 Sum_probs=78.9
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||.++|+++|+++|++||+|++|+|+.++ +++++|||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999998 79999999999999999999998887 899999999999
Q ss_pred cCCCCC
Q 009916 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998764
No 66
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=2.1e-17 Score=134.64 Aligned_cols=81 Identities=27% Similarity=0.547 Sum_probs=77.3
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 009916 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~p 183 (522)
+.+|||+|||.++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|++.++ ..|+|++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999999877 899999999999998
Q ss_pred CC
Q 009916 184 KE 185 (522)
Q Consensus 184 k~ 185 (522)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 67
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=136.23 Aligned_cols=82 Identities=26% Similarity=0.500 Sum_probs=75.7
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.++++|++|++.++ ..|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999999877 8999999999999
Q ss_pred CCC
Q 009916 182 VPK 184 (522)
Q Consensus 182 ~pk 184 (522)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=140.81 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=81.4
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCcceEEEEEecCHHHHHHHHHhc-C-CccCCeEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD-HNTQRPRGFGFITYDSEEAVDRVLHKT-F-HELNGKMVE 177 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d-~~tg~~rG~aFVeF~s~e~A~~Al~~~-~-~~l~Gr~I~ 177 (522)
.....++|||+|||.++++++|+++|++||+|++|+|+++ +.+++++|||||+|.++++|++||+.+ + ..|.+++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999999 788999999999999999999999998 6 899999999
Q ss_pred EEEcCCCCCCC
Q 009916 178 VKRAVPKEFSP 188 (522)
Q Consensus 178 V~~a~pk~~~~ 188 (522)
|++++++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99999876543
No 69
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=141.86 Aligned_cols=84 Identities=30% Similarity=0.519 Sum_probs=79.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 56799999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 876543
No 70
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=2.3e-17 Score=140.97 Aligned_cols=87 Identities=24% Similarity=0.410 Sum_probs=80.4
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc---CCeEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL---NGKMV 176 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l---~Gr~I 176 (522)
...+.++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ ..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 676 88999
Q ss_pred EEEEcCCCCCC
Q 009916 177 EVKRAVPKEFS 187 (522)
Q Consensus 177 ~V~~a~pk~~~ 187 (522)
+|++++++...
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999987654
No 71
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=139.01 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=79.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCC---CCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHN---TQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~---tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
.+.++|||+|||+++++++|+++|++||+|++|.|++++. |++++|||||+|.++++|++||+.++ ..|++++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999999887 66899999999999999999999888 8999999999
Q ss_pred EEcCCCCCCC
Q 009916 179 KRAVPKEFSP 188 (522)
Q Consensus 179 ~~a~pk~~~~ 188 (522)
++++++...+
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9999876543
No 72
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.9e-18 Score=143.39 Aligned_cols=85 Identities=48% Similarity=0.984 Sum_probs=79.9
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| .+.+.|++++|.|+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 367899999999999999999999999999999999999999999999999999999999999 8889999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 877654
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=142.56 Aligned_cols=85 Identities=25% Similarity=0.483 Sum_probs=79.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hc------ccccCCeE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD------KHMIDGRT 74 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n------~~~i~Gr~ 74 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++ .+.|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 46789999999999999999999999999999999999999999999999999999999999 77 89999999
Q ss_pred EEEeeccCCcccc
Q 009916 75 VEAKKAVPRDDQN 87 (522)
Q Consensus 75 I~V~~a~~~~~~~ 87 (522)
|.|+++.++....
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999998775543
No 74
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=139.68 Aligned_cols=82 Identities=22% Similarity=0.446 Sum_probs=77.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999998 7999999999999999999999 8999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87653
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.7e-17 Score=139.14 Aligned_cols=85 Identities=19% Similarity=0.351 Sum_probs=78.4
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||+++++++|+++|++|+ |++|+|++++.+++++|||||+|+++++|++|| .++ .+|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 35678999999999999999999999996 999999999999999999999999999999999 666 899999999999
Q ss_pred cCCCCCCC
Q 009916 181 AVPKEFSP 188 (522)
Q Consensus 181 a~pk~~~~ 188 (522)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 99876543
No 76
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=142.38 Aligned_cols=85 Identities=38% Similarity=0.764 Sum_probs=78.0
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++. .|++++|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999 565 89999999999
Q ss_pred ccCCcccc
Q 009916 80 AVPRDDQN 87 (522)
Q Consensus 80 a~~~~~~~ 87 (522)
+.++....
T Consensus 93 a~~~~~~~ 100 (116)
T 2cqd_A 93 AYLGAKPR 100 (116)
T ss_dssp STTTCCCC
T ss_pred cccCCCcc
Confidence 97654443
No 77
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=2.4e-17 Score=135.80 Aligned_cols=80 Identities=39% Similarity=0.780 Sum_probs=76.0
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
..+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||++++++|+|++|+|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999999999999999999999999999988778999999999986
No 78
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=139.99 Aligned_cols=84 Identities=30% Similarity=0.561 Sum_probs=79.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEE-EEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEA-VIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v-~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
.+.++|||+|||+++++++|+++|++||+|++| +|++++.++++++||||+|.++++|++|| ++++.|++++|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 578999999999999999999999999999999 99999889999999999999999999999 899999999999999
Q ss_pred ccCCccc
Q 009916 80 AVPRDDQ 86 (522)
Q Consensus 80 a~~~~~~ 86 (522)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 79
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=139.38 Aligned_cols=86 Identities=27% Similarity=0.427 Sum_probs=79.7
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||+++|+++|+++|++||+|++|+|+.+ ++++++||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 457889999999999999999999999999999999998 78999999999999999999999877 899999999999
Q ss_pred cCCCCCCCC
Q 009916 181 AVPKEFSPG 189 (522)
Q Consensus 181 a~pk~~~~~ 189 (522)
++++..++.
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998876543
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=140.34 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=78.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC-CCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT-QRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~t-g~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
.+.++|||+|||+++++++|+++|++|| |++|.|++++.+ ++++|||||+|.++++|++|| .++ ..|++++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999999988 899999999999999999999 666 899999999999
Q ss_pred cCCCCCCC
Q 009916 181 AVPKEFSP 188 (522)
Q Consensus 181 a~pk~~~~ 188 (522)
++++....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99887644
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=140.86 Aligned_cols=88 Identities=23% Similarity=0.413 Sum_probs=81.3
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-------CccCC
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-------HELNG 173 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-------~~l~G 173 (522)
...+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++||+.++ ..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999874 68999
Q ss_pred eEEEEEEcCCCCCCC
Q 009916 174 KMVEVKRAVPKEFSP 188 (522)
Q Consensus 174 r~I~V~~a~pk~~~~ 188 (522)
++|+|+++.++....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999999886654
No 82
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=139.65 Aligned_cols=84 Identities=29% Similarity=0.532 Sum_probs=78.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCC---CCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRA---TGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~---tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V 77 (522)
.+.++|||+|||++++|++|+++|++||+|++|+|++++. |+++++||||+|.++++|++|| ++++.|++++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5789999999999999999999999999999999999876 6689999999999999999999 7999999999999
Q ss_pred eeccCCccc
Q 009916 78 KKAVPRDDQ 86 (522)
Q Consensus 78 ~~a~~~~~~ 86 (522)
+++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 83
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=141.59 Aligned_cols=83 Identities=29% Similarity=0.458 Sum_probs=78.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 56799999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86543
No 84
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=9.1e-18 Score=142.01 Aligned_cols=81 Identities=19% Similarity=0.362 Sum_probs=75.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCC--eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-C----ccCCeE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGT--ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H----ELNGKM 175 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~--V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~----~l~Gr~ 175 (522)
....+|||+|||+++|+++|+++|++||. |++|+|++|+.|+++||||||+|.++++|++||+.++ . .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 46789999999999999999999999995 6799999999999999999999999999999999887 3 499999
Q ss_pred EEEEEcCC
Q 009916 176 VEVKRAVP 183 (522)
Q Consensus 176 I~V~~a~p 183 (522)
|.|++|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999974
No 85
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=3e-17 Score=139.74 Aligned_cols=83 Identities=17% Similarity=0.389 Sum_probs=78.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++++++|+++|++|+ |++|+|++++.+++++|||||+|.++++|++|| ++++.|++++|.|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 5679999999999999999999999996 999999999999999999999999999999999 99999999999999998
Q ss_pred CCccc
Q 009916 82 PRDDQ 86 (522)
Q Consensus 82 ~~~~~ 86 (522)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2dng_A 92 GRKQD 96 (103)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 86
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=141.08 Aligned_cols=85 Identities=24% Similarity=0.455 Sum_probs=79.3
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeec-CCCCCcccEEEEEecCHHHHHHHH--h-cccccCCeEEEE
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRD-RATGRARGFGFVVFADPAVAERVI--M-DKHMIDGRTVEA 77 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d-~~tg~srG~aFVeF~~~e~A~kAl--~-n~~~i~Gr~I~V 77 (522)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ +.++++++||||+|.++++|++|| + +++.|++++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 357899999999999999999999999999999999999 788999999999999999999999 7 899999999999
Q ss_pred eeccCCccc
Q 009916 78 KKAVPRDDQ 86 (522)
Q Consensus 78 ~~a~~~~~~ 86 (522)
+++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876544
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.2e-18 Score=143.98 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=76.3
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++. +++||||||+|.++++|++|| ++.+.|++++|.|+++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45679999999999999999999999999999999999987 999999999999999999999 8999999999999987
Q ss_pred cCC
Q 009916 81 VPR 83 (522)
Q Consensus 81 ~~~ 83 (522)
.+.
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 664
No 88
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=136.26 Aligned_cols=83 Identities=28% Similarity=0.556 Sum_probs=78.3
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
.+.+.++|||+|||.++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++||+.++ ..|++++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcCC
Q 009916 180 RAVP 183 (522)
Q Consensus 180 ~a~p 183 (522)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 89
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=1.4e-17 Score=144.42 Aligned_cols=102 Identities=16% Similarity=0.287 Sum_probs=91.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|.+|.|+++ ++++|||||+|.++++|++|+ +++..|+++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46789999999999999999999999999999999976 456999999999999999999 8999999999999998
Q ss_pred cCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCC
Q 009916 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGT 131 (522)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~ 131 (522)
.++... .+++...++++|+++|++||.
T Consensus 83 ~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 765432 356778899999999999985
No 90
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=137.27 Aligned_cols=80 Identities=30% Similarity=0.465 Sum_probs=76.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++++.|++++|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999988
Q ss_pred cC
Q 009916 81 VP 82 (522)
Q Consensus 81 ~~ 82 (522)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 91
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=2.2e-17 Score=142.61 Aligned_cols=85 Identities=48% Similarity=0.882 Sum_probs=76.3
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ..++.|++++|.|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999999 5569999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 92
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=140.13 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=77.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCc
Q 009916 81 VPRD 84 (522)
Q Consensus 81 ~~~~ 84 (522)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7654
No 93
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=143.54 Aligned_cols=86 Identities=42% Similarity=0.764 Sum_probs=80.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (522)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++||+.+.+.|+|++|+|++++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 35689999999999999999999999999999999999999999999999999999999999994489999999999999
Q ss_pred CCCCCC
Q 009916 183 PKEFSP 188 (522)
Q Consensus 183 pk~~~~ 188 (522)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 887644
No 94
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=8.5e-18 Score=139.85 Aligned_cols=80 Identities=24% Similarity=0.503 Sum_probs=70.8
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeecc
Q 009916 6 GKLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~F~~~G--~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~ 81 (522)
.+|||+|||+++||++|+++|++|| +|.+|+|++++.++++||||||+|.++++|++|| ++++.|++++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999999999999999999999999999999 99999999999999988
Q ss_pred CCcc
Q 009916 82 PRDD 85 (522)
Q Consensus 82 ~~~~ 85 (522)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=2.8e-17 Score=141.99 Aligned_cols=86 Identities=38% Similarity=0.717 Sum_probs=79.0
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
..+.++|||+|||.++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.+++.|+|++|+|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 35678999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred CCCCCC
Q 009916 182 VPKEFS 187 (522)
Q Consensus 182 ~pk~~~ 187 (522)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987654
No 96
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.5e-17 Score=136.79 Aligned_cols=87 Identities=25% Similarity=0.581 Sum_probs=79.0
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||.++++++|+++|++||+|++|+|++++.+ +++||||+|.++++|++||+.++ ..|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999998753 89999999999999999999877 89999999999
Q ss_pred EcCCCCCCCC
Q 009916 180 RAVPKEFSPG 189 (522)
Q Consensus 180 ~a~pk~~~~~ 189 (522)
+++++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9998876543
No 97
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=6.8e-17 Score=137.74 Aligned_cols=85 Identities=26% Similarity=0.426 Sum_probs=78.7
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCC---eEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG---KMVEV 178 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~G---r~I~V 178 (522)
.+.++|||+|||.++++++|+++|++||+|++|+|++++ +++++|||||+|.++++|++||+.++ ..|.+ ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467899999999999999999999999999999999998 68999999999999999999999888 78888 99999
Q ss_pred EEcCCCCCCC
Q 009916 179 KRAVPKEFSP 188 (522)
Q Consensus 179 ~~a~pk~~~~ 188 (522)
++++++..++
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999877643
No 98
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=2.1e-17 Score=141.22 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=79.1
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hccccc---CCeEEE
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI---DGRTVE 76 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i---~Gr~I~ 76 (522)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++|+||||+|.++++|++|| +++..+ .+++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 467899999999999999999999999999999999999999999999999999999999999 888887 899999
Q ss_pred EeeccCCccc
Q 009916 77 AKKAVPRDDQ 86 (522)
Q Consensus 77 V~~a~~~~~~ 86 (522)
|+++.++...
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999876543
No 99
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=137.49 Aligned_cols=79 Identities=25% Similarity=0.580 Sum_probs=75.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++++.|++++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999 8999999999999987
Q ss_pred c
Q 009916 81 V 81 (522)
Q Consensus 81 ~ 81 (522)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 100
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=139.89 Aligned_cols=83 Identities=22% Similarity=0.460 Sum_probs=78.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC-CCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT-GRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~t-g~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++++++|+++|++|| |++|+|++++.+ ++++|||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4679999999999999999999999999 999999999887 999999999999999999999 9999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876554
No 101
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=9.4e-18 Score=139.60 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=71.5
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 106 KKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG--~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
.+|||+|||+++|+++|+++|++|| .|++|+|++|+.+++++|||||+|.++++|++||+.++ .+|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999888 89999999999999
Q ss_pred CCCCC
Q 009916 183 PKEFS 187 (522)
Q Consensus 183 pk~~~ 187 (522)
|+...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87654
No 102
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=141.07 Aligned_cols=87 Identities=22% Similarity=0.383 Sum_probs=80.8
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL 171 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~--------~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l 171 (522)
...+.++|||+|||.++|+++|+++|++||.|+ +|+|+.++.+++++|||||+|.++++|++||+.++ +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 79999999999999999999999999999999877 899
Q ss_pred CCeEEEEEEcCCCCCC
Q 009916 172 NGKMVEVKRAVPKEFS 187 (522)
Q Consensus 172 ~Gr~I~V~~a~pk~~~ 187 (522)
.+++|+|++++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999987654
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=135.87 Aligned_cols=86 Identities=21% Similarity=0.367 Sum_probs=77.7
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
.....++|||+|||+++++++|+++|++||+|++|+|++++.+ ++|||||+|.++++|++||+.++ ..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456789999999999999999999999999999999998654 68999999999999999999777 89999999999
Q ss_pred EcCCCCCCC
Q 009916 180 RAVPKEFSP 188 (522)
Q Consensus 180 ~a~pk~~~~ 188 (522)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999876543
No 104
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=3.6e-17 Score=140.74 Aligned_cols=85 Identities=16% Similarity=0.313 Sum_probs=80.0
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||.++++++|+++|++||+|++|.|+.++.+++++|||||+|.++++|++||+.++ ..|+|++|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999877 899999999999
Q ss_pred cCCCCC
Q 009916 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
++++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 998764
No 105
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.1e-17 Score=146.66 Aligned_cols=86 Identities=19% Similarity=0.289 Sum_probs=78.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCC---eEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGE---VVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~---V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~ 78 (522)
.+.++|||+|||+++||++|+++|++||+ |++|+|++++. +++||||||+|.++++|++|| ++++.|++|.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 46789999999999999999999999999 89999999987 999999999999999999999 99999999999999
Q ss_pred eccCCcccccc
Q 009916 79 KAVPRDDQNML 89 (522)
Q Consensus 79 ~a~~~~~~~~~ 89 (522)
++.+++.+...
T Consensus 94 ~a~~~~~~~~~ 104 (118)
T 2db1_A 94 KSHRTEMDWVL 104 (118)
T ss_dssp EECHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 99776654433
No 106
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=6.8e-17 Score=141.18 Aligned_cols=85 Identities=29% Similarity=0.586 Sum_probs=79.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||.++|+++|+++|++||.|++|.|+.++ +++++|||||+|.++++|++||+.++ ..|++++|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999998 89999999999999999999999888 8999999999999
Q ss_pred CCCCCCC
Q 009916 182 VPKEFSP 188 (522)
Q Consensus 182 ~pk~~~~ 188 (522)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 9876543
No 107
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.9e-18 Score=145.82 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=79.0
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCe-EEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEV-VEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V-~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++||++|+++|++||.| .+|+|++++ ++++||||||+|.++++|++|| ++++.|++++|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4578999999999999999999999999999 889999998 8999999999999999999999 989999999999999
Q ss_pred ccCCcccc
Q 009916 80 AVPRDDQN 87 (522)
Q Consensus 80 a~~~~~~~ 87 (522)
+.+++...
T Consensus 91 a~~~~~~~ 98 (114)
T 2cpy_A 91 VTLEDMRE 98 (114)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHH
Confidence 98776444
No 108
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=139.15 Aligned_cols=84 Identities=19% Similarity=0.367 Sum_probs=79.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||.++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++||+.++ +.|+|++|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 467899999999999999999999999999999999999999999999999999999999999877 8999999999999
Q ss_pred CCCCC
Q 009916 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
+++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 88653
No 109
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=138.53 Aligned_cols=86 Identities=26% Similarity=0.447 Sum_probs=79.9
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Cc-cCCeEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HE-LNGKMVEV 178 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~-fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~-l~Gr~I~V 178 (522)
..+.++|||+|||+++|+++|+++|++ ||.|++|+|++++ +++++|||||+|.++++|++||+.++ .. |+|++|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 356789999999999999999999999 9999999999999 89999999999999999999999888 78 99999999
Q ss_pred EEcCCCCCCC
Q 009916 179 KRAVPKEFSP 188 (522)
Q Consensus 179 ~~a~pk~~~~ 188 (522)
+++.++....
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9998877654
No 110
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=3.7e-18 Score=166.89 Aligned_cols=82 Identities=17% Similarity=0.334 Sum_probs=76.9
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG--~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..++|||+|||+++||++|+++|++|| .|++|+|++|+.++++||||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999888 899999999999
Q ss_pred cCCCC
Q 009916 181 AVPKE 185 (522)
Q Consensus 181 a~pk~ 185 (522)
++++.
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 111
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=139.08 Aligned_cols=82 Identities=27% Similarity=0.411 Sum_probs=76.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 467899999999999999999999999999999999998 4999999999999999999999 8999999999999998
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76543
No 112
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=142.01 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=74.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++||+||+++|++||+| +|+|++++ ++++||||||+|.++++|++|| ++.+.|++|.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 467899999999999999999999999965 99999998 7999999999999999999999 99999999999999887
Q ss_pred CCc
Q 009916 82 PRD 84 (522)
Q Consensus 82 ~~~ 84 (522)
+.+
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 113
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=4.4e-17 Score=136.89 Aligned_cols=83 Identities=23% Similarity=0.454 Sum_probs=78.7
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeeccC
Q 009916 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~~ 82 (522)
+++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++|+ +++..|++++|.|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 689999999999999999999999999999999999989999999999999999999999 899999999999999988
Q ss_pred Ccccc
Q 009916 83 RDDQN 87 (522)
Q Consensus 83 ~~~~~ 87 (522)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 76543
No 114
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=140.32 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=76.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEE-EEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVE-AVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~-v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++||++|+++|++||+|.+ |+|+++ .+++++|||||+|.++++|++|| ++++.|.+|.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 46799999999999999999999999999988 888888 67999999999999999999999 8889999999999998
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.+++..
T Consensus 92 ~~~~~~ 97 (104)
T 1wg5_A 92 SRAEVR 97 (104)
T ss_dssp CTTTSC
T ss_pred CHHHHH
Confidence 765543
No 115
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=6e-17 Score=138.07 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=77.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCC---eEEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG---RTVEA 77 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~G---r~I~V 77 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| +++..|.+ ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999998 6999999999999999999999 89999998 99999
Q ss_pred eeccCCccc
Q 009916 78 KKAVPRDDQ 86 (522)
Q Consensus 78 ~~a~~~~~~ 86 (522)
+++.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876554
No 116
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=4.4e-17 Score=142.04 Aligned_cols=82 Identities=27% Similarity=0.500 Sum_probs=74.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
...+|||+|||+++||++|+++|++||+|++|+|++|+. .+||||||+|+++++|++||+.++ ++|+|++|+|++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 356899999999999999999999999999999999964 479999999999999999999887 89999999999998
Q ss_pred CCCCC
Q 009916 183 PKEFS 187 (522)
Q Consensus 183 pk~~~ 187 (522)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 87654
No 117
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=138.45 Aligned_cols=83 Identities=27% Similarity=0.596 Sum_probs=77.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ++++++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 57899999999999999999999999999999999998 7899999999999999999999 8999999999999999
Q ss_pred cCCcccc
Q 009916 81 VPRDDQN 87 (522)
Q Consensus 81 ~~~~~~~ 87 (522)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 8776543
No 118
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=8.6e-18 Score=142.88 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=78.3
Q ss_pred CCCcEEEECCCCC------CCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCC-e
Q 009916 3 SDLGKLFIGGISW------DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG-R 73 (522)
Q Consensus 3 ~d~r~LfVgnLP~------~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~G-r 73 (522)
...++|||+|||+ ++++++|+++|++||+|++|+|++++.|+++||||||+|.++++|++|| ++++.|++ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 9999999999999999999999999999999999999999999999999 99999999 9
Q ss_pred EEEEeeccCCcc
Q 009916 74 TVEAKKAVPRDD 85 (522)
Q Consensus 74 ~I~V~~a~~~~~ 85 (522)
+|.|+++.+++.
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999987543
No 119
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=137.86 Aligned_cols=82 Identities=30% Similarity=0.460 Sum_probs=77.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeE-EEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeE----E
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVV-EAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRT----V 75 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~-~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~----I 75 (522)
.+.++|||+|||++++|++|+++|++||+|+ +|+|++++.++++++||||+|.++++|++|+ ++++.|+++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 5689999999999999999999999999999 9999999999999999999999999999999 8999999999 9
Q ss_pred EEeeccCCc
Q 009916 76 EAKKAVPRD 84 (522)
Q Consensus 76 ~V~~a~~~~ 84 (522)
+|+++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999887653
No 120
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=136.64 Aligned_cols=85 Identities=20% Similarity=0.376 Sum_probs=79.4
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCee-EEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeE----
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTIT-DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM---- 175 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~-~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~---- 175 (522)
..+.++|||+|||+++++++|+++|++||+|+ +|+|++++.+++++|||||+|.++++|++||+.++ ..|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35678999999999999999999999999999 99999999999999999999999999999999888 8999999
Q ss_pred EEEEEcCCCCC
Q 009916 176 VEVKRAVPKEF 186 (522)
Q Consensus 176 I~V~~a~pk~~ 186 (522)
|+|+++++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987643
No 121
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=135.30 Aligned_cols=81 Identities=20% Similarity=0.491 Sum_probs=76.9
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|++.++ ..|++++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cC
Q 009916 181 AV 182 (522)
Q Consensus 181 a~ 182 (522)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 122
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=140.26 Aligned_cols=82 Identities=24% Similarity=0.623 Sum_probs=78.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ +++..|++++|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 56799999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCc
Q 009916 81 VPRD 84 (522)
Q Consensus 81 ~~~~ 84 (522)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 123
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=5e-17 Score=132.97 Aligned_cols=80 Identities=30% Similarity=0.542 Sum_probs=76.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|++.++ ..|+|++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999998877 8999999999998
Q ss_pred C
Q 009916 182 V 182 (522)
Q Consensus 182 ~ 182 (522)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 124
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=135.76 Aligned_cols=79 Identities=28% Similarity=0.515 Sum_probs=74.8
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++. +++++||||+|.++++|++|| ++++.|++++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 35679999999999999999999999999999999999986 899999999999999999999 899999999999998
Q ss_pred cc
Q 009916 80 AV 81 (522)
Q Consensus 80 a~ 81 (522)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 125
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=8.6e-17 Score=140.55 Aligned_cols=84 Identities=35% Similarity=0.687 Sum_probs=78.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.+.++|++|| +++..|++++|.|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467999999999999999999999999999999999998 8999999999999999999999 8999999999999999
Q ss_pred cCCcccc
Q 009916 81 VPRDDQN 87 (522)
Q Consensus 81 ~~~~~~~ 87 (522)
.++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8765443
No 126
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=139.17 Aligned_cols=85 Identities=29% Similarity=0.609 Sum_probs=80.0
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
.....++|||+|||..+++++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|++.++ ..|+|++|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999877 89999999999
Q ss_pred EcCCCC
Q 009916 180 RAVPKE 185 (522)
Q Consensus 180 ~a~pk~ 185 (522)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 127
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=138.52 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=77.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCC-eEEEEEe-ecCCCCCcccEEEEEecCHHHHHHHH--hc--ccccCCeEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGE-VVEAVIM-RDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~-V~~v~i~-~d~~tg~srG~aFVeF~~~e~A~kAl--~n--~~~i~Gr~I~ 76 (522)
.+.++|||+|||+++|+++|+++|++||+ |++|.|+ +++.++++||||||+|.++++|++|+ ++ .+.|++++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 56899999999999999999999999998 9999998 78888999999999999999999999 65 5899999999
Q ss_pred EeeccCCccc
Q 009916 77 AKKAVPRDDQ 86 (522)
Q Consensus 77 V~~a~~~~~~ 86 (522)
|+++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999877654
No 128
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=138.05 Aligned_cols=83 Identities=27% Similarity=0.533 Sum_probs=77.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhc-cCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccc-cCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSR-YGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHM-IDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~-~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~-i~Gr~I~V~ 78 (522)
...++|||+|||+++|+++|+++|++ ||+|++|+|++++ ++++++||||+|.++++|++|| ++++. |++++|.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 46799999999999999999999999 9999999999998 8999999999999999999999 88888 999999999
Q ss_pred eccCCccc
Q 009916 79 KAVPRDDQ 86 (522)
Q Consensus 79 ~a~~~~~~ 86 (522)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99776544
No 129
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-17 Score=141.26 Aligned_cols=84 Identities=23% Similarity=0.410 Sum_probs=78.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeE--------EEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCC
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVV--------EAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG 72 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~--------~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~G 72 (522)
.+.++|||+|||+++|+++|+++|++||+|+ .|+|++++.+++++|||||+|.++++|++|| ++++.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999999 6999999889999999999999999999999 89999999
Q ss_pred eEEEEeeccCCccc
Q 009916 73 RTVEAKKAVPRDDQ 86 (522)
Q Consensus 73 r~I~V~~a~~~~~~ 86 (522)
++|.|+++.++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999876543
No 130
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.1e-17 Score=136.59 Aligned_cols=83 Identities=22% Similarity=0.363 Sum_probs=76.0
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++. .+++||||+|.++++|++|| ++++.|++++|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35679999999999999999999999999999999999864 37999999999999999999 899999999999999
Q ss_pred ccCCccc
Q 009916 80 AVPRDDQ 86 (522)
Q Consensus 80 a~~~~~~ 86 (522)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876543
No 131
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=4.7e-17 Score=143.48 Aligned_cols=87 Identities=18% Similarity=0.355 Sum_probs=81.0
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999877 899999999999
Q ss_pred cCCCCCCC
Q 009916 181 AVPKEFSP 188 (522)
Q Consensus 181 a~pk~~~~ 188 (522)
+.++....
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 99876543
No 132
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=145.17 Aligned_cols=84 Identities=29% Similarity=0.490 Sum_probs=79.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++||||||+|.++++|++|| +++..|++++|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876544
No 133
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=6.7e-17 Score=135.78 Aligned_cols=83 Identities=16% Similarity=0.406 Sum_probs=78.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
++++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.++++|++|++.++ ..|+|++|+|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999999999999999999999999999999887 89999999999999
Q ss_pred CCCC
Q 009916 183 PKEF 186 (522)
Q Consensus 183 pk~~ 186 (522)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8764
No 134
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=2.2e-17 Score=132.11 Aligned_cols=74 Identities=45% Similarity=0.815 Sum_probs=71.5
Q ss_pred EEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
+|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ ++++.|++++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999999999989999999999999999999999 9999999999999875
No 135
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=136.07 Aligned_cols=84 Identities=26% Similarity=0.568 Sum_probs=77.0
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++. .+++||||+|.++++|++|| ++++.|++++|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999999999999999864 48999999999999999999 899999999999999
Q ss_pred ccCCcccc
Q 009916 80 AVPRDDQN 87 (522)
Q Consensus 80 a~~~~~~~ 87 (522)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 98775443
No 136
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=5.4e-17 Score=139.66 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=77.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCc
Q 009916 81 VPRD 84 (522)
Q Consensus 81 ~~~~ 84 (522)
.++.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7754
No 137
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-17 Score=141.45 Aligned_cols=86 Identities=29% Similarity=0.626 Sum_probs=80.4
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ ++++.|++++|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 456789999999999999999999999999999999999989999999999999999999999 899999999999999
Q ss_pred ccCCcccc
Q 009916 80 AVPRDDQN 87 (522)
Q Consensus 80 a~~~~~~~ 87 (522)
+.++....
T Consensus 85 a~~~~~~~ 92 (104)
T 1p1t_A 85 AASEKNKE 92 (104)
T ss_dssp TTCTTHHH
T ss_pred CCCccchh
Confidence 98876544
No 138
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=133.88 Aligned_cols=80 Identities=19% Similarity=0.401 Sum_probs=75.7
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++++++|+++|++| +|++|+|+++ .+++++|||||+|.++++|++|| ++++.|++++|+|+++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 567999999999999999999999999 9999999999 67999999999999999999999 99999999999999998
Q ss_pred CCc
Q 009916 82 PRD 84 (522)
Q Consensus 82 ~~~ 84 (522)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 139
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=143.62 Aligned_cols=80 Identities=23% Similarity=0.404 Sum_probs=74.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++||++|+++|++| .|++|+|++++. +++||||||+|.++++|++|| ++++.|.+|.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 356899999999999999999999999 899999999986 999999999999999999999 99999999999999887
Q ss_pred CCc
Q 009916 82 PRD 84 (522)
Q Consensus 82 ~~~ 84 (522)
+++
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 140
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=5.7e-17 Score=144.55 Aligned_cols=85 Identities=28% Similarity=0.568 Sum_probs=80.2
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
.+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|+++++|++||+.++ .+|+|++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999887 89999999999
Q ss_pred EcCCCC
Q 009916 180 RAVPKE 185 (522)
Q Consensus 180 ~a~pk~ 185 (522)
++++++
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998865
No 141
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.7e-17 Score=140.53 Aligned_cols=83 Identities=46% Similarity=0.885 Sum_probs=78.2
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeeccC
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~~ 82 (522)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| .+.+.|++++|.|+++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 4589999999999999999999999999999999999999999999999999999999999 888899999999999988
Q ss_pred Cccc
Q 009916 83 RDDQ 86 (522)
Q Consensus 83 ~~~~ 86 (522)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7653
No 142
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=139.21 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=75.2
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
+...++|||+|||+++||+||+++|++||+| +|+|++|+ ++++||||||+|+++++|++||+++.++|++|.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 3567899999999999999999999999954 99999998 799999999999999999999976448999999999998
Q ss_pred CCCCC
Q 009916 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
.+++.
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 143
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=136.59 Aligned_cols=84 Identities=15% Similarity=0.319 Sum_probs=75.5
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||.++|+++|+++|++||.|++|+|+.+ .++++||||+|+++++|++||+.++ .+|++++|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999654 4579999999999999999998887 89999999999
Q ss_pred EcCCCCCC
Q 009916 180 RAVPKEFS 187 (522)
Q Consensus 180 ~a~pk~~~ 187 (522)
+++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99887643
No 144
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=136.07 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=78.5
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
....++|||+|||+++++++|+++|++||+|++++++.++.+++++|||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cCCCC
Q 009916 181 AVPKE 185 (522)
Q Consensus 181 a~pk~ 185 (522)
+.++.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 98653
No 145
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=135.09 Aligned_cols=82 Identities=24% Similarity=0.403 Sum_probs=77.3
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL 171 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~--------v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l 171 (522)
.+...++|||+|||.++++++|+++|++||.|++ |+|++++.+++++|||||+|.++++|++||+.++ .+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4457789999999999999999999999999999 9999999999999999999999999999999877 899
Q ss_pred CCeEEEEEEcC
Q 009916 172 NGKMVEVKRAV 182 (522)
Q Consensus 172 ~Gr~I~V~~a~ 182 (522)
.|++|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 146
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=5e-17 Score=144.89 Aligned_cols=82 Identities=29% Similarity=0.475 Sum_probs=78.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| +++..|++++|.|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCc
Q 009916 81 VPRD 84 (522)
Q Consensus 81 ~~~~ 84 (522)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8754
No 147
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2e-16 Score=136.16 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=75.6
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCC-----eE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG-----KM 175 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~G-----r~ 175 (522)
....++|||+|||+++|+++|+++|++||+|++|+|+++ |||||+|+++++|++||+.++ ++|++ ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999876 799999999999999999888 79999 99
Q ss_pred EEEEEcCCCCCCCCCCC
Q 009916 176 VEVKRAVPKEFSPGPSR 192 (522)
Q Consensus 176 I~V~~a~pk~~~~~~~r 192 (522)
|+|++++++...+.+.+
T Consensus 85 i~V~~a~~~~~~~~rsr 101 (108)
T 1x4c_A 85 IRVKVDGPRSPSYGRSR 101 (108)
T ss_dssp EEEEESSCCSCCCCCSS
T ss_pred EEEEeCCCCCCCCCCCC
Confidence 99999999876554443
No 148
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=6.4e-17 Score=133.03 Aligned_cols=82 Identities=26% Similarity=0.488 Sum_probs=76.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCC-cccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGR-ARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~-srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
.+.++|||+|||+++|+++|+++|++||+|.+|+|++++.++. +++||||+|.++++|++|+ +++..|++++|.|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4678999999999999999999999999999999999987666 9999999999999999999 899999999999999
Q ss_pred ccCCc
Q 009916 80 AVPRD 84 (522)
Q Consensus 80 a~~~~ 84 (522)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87643
No 149
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-17 Score=137.86 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++++++|+++|++||+|+++++++++.++++++||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999 8999999999999998
Q ss_pred cCC
Q 009916 81 VPR 83 (522)
Q Consensus 81 ~~~ 83 (522)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 150
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=1.1e-16 Score=132.90 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=76.1
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++++++|+++|++||+|++|+|+++ ++++++||||+|.++++|++|+ ++++.|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999999984 6899999999999999999999 899999999999999
Q ss_pred ccCCcc
Q 009916 80 AVPRDD 85 (522)
Q Consensus 80 a~~~~~ 85 (522)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 977654
No 151
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=2.8e-17 Score=137.45 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=74.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|+++++++++.++++++||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999 8999999999999987
Q ss_pred c
Q 009916 81 V 81 (522)
Q Consensus 81 ~ 81 (522)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 152
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.2e-16 Score=139.13 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=76.8
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ .+|++++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcC
Q 009916 180 RAV 182 (522)
Q Consensus 180 ~a~ 182 (522)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 153
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-17 Score=144.48 Aligned_cols=83 Identities=19% Similarity=0.367 Sum_probs=78.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++++.|++++|.|+++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 34689999999999999999999999999999999999999999999999999999999999 99999999999999987
Q ss_pred CCcc
Q 009916 82 PRDD 85 (522)
Q Consensus 82 ~~~~ 85 (522)
++..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7544
No 154
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=6.2e-17 Score=149.10 Aligned_cols=81 Identities=23% Similarity=0.535 Sum_probs=76.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G--~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.++|||+|||+++||++|+++|++|| +|++|+|++|+.++++||||||+|.++++|++|| ++++.|++++|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999999999999999999999999999999 799999999999999
Q ss_pred ccCCc
Q 009916 80 AVPRD 84 (522)
Q Consensus 80 a~~~~ 84 (522)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97654
No 155
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=135.32 Aligned_cols=79 Identities=28% Similarity=0.492 Sum_probs=75.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEE--------EEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCC
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVE--------AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG 72 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~--------v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~G 72 (522)
...++|||+|||+++++++|+++|++||+|++ |+|++++.+++++|||||+|.++++|++|+ +++..|++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999999999999 999999999999999999999999999999 89999999
Q ss_pred eEEEEeecc
Q 009916 73 RTVEAKKAV 81 (522)
Q Consensus 73 r~I~V~~a~ 81 (522)
++|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 156
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=1.3e-16 Score=146.04 Aligned_cols=83 Identities=25% Similarity=0.432 Sum_probs=78.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 157
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.6e-17 Score=138.77 Aligned_cols=80 Identities=10% Similarity=0.219 Sum_probs=71.7
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hc--ccccCCeEEEE
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEA 77 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n--~~~i~Gr~I~V 77 (522)
+.+.++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|.++++|++|+ ++ ..+|++++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 357899999999999999999999999999999999875 689999999999999999 44 47899999999
Q ss_pred eeccCCcccc
Q 009916 78 KKAVPRDDQN 87 (522)
Q Consensus 78 ~~a~~~~~~~ 87 (522)
+++.++....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765544
No 158
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=1.6e-17 Score=141.17 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=78.9
Q ss_pred CCcceeEecCCCC------CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCC-e
Q 009916 103 GRTKKIFVGGLAS------TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG-K 174 (522)
Q Consensus 103 ~~~~~LfVgnLp~------~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~G-r 174 (522)
...++|||+|||. ++++++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++||+.++ ..|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999999999999999999999999999888 89999 9
Q ss_pred EEEEEEcCCCCC
Q 009916 175 MVEVKRAVPKEF 186 (522)
Q Consensus 175 ~I~V~~a~pk~~ 186 (522)
+|+|+++.|+++
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999987653
No 159
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=4.3e-17 Score=142.07 Aligned_cols=79 Identities=24% Similarity=0.431 Sum_probs=74.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| +++..|++++|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 46799999999999999999999999999999999999989999999999999999999999 8999999999999886
Q ss_pred c
Q 009916 81 V 81 (522)
Q Consensus 81 ~ 81 (522)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 3
No 160
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=8.2e-17 Score=141.90 Aligned_cols=84 Identities=21% Similarity=0.393 Sum_probs=79.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 46789999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876544
No 161
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=133.34 Aligned_cols=81 Identities=10% Similarity=0.149 Sum_probs=75.4
Q ss_pred CCcceeEecCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~----~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (522)
...++|||+|||+++++++|+ ++|++||+|++|+|++|+.+ |+||||+|.++++|++||+.++ .+|+|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 466899999999999999999 99999999999999999876 7899999999999999999888 899999999
Q ss_pred EEEcCCCCC
Q 009916 178 VKRAVPKEF 186 (522)
Q Consensus 178 V~~a~pk~~ 186 (522)
|++++++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 162
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.8e-16 Score=130.74 Aligned_cols=80 Identities=21% Similarity=0.468 Sum_probs=75.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
..++|||+|||.++++++|+++|++||+|++|+|+.++.+++++|||||+|.++++|++|+ .++ ..|+|++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999999999999999999999999999 666 89999999999998
Q ss_pred CC
Q 009916 183 PK 184 (522)
Q Consensus 183 pk 184 (522)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 163
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=3.1e-17 Score=147.82 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=77.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCC---eEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGE---VVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~---V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~ 78 (522)
.+.++|||+|||+++||++|+++|++||+ |++|+|++++. +++||||||+|.++++|++|| ++++.|++|+|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 56789999999999999999999999999 89999999987 999999999999999999999 99999999999999
Q ss_pred eccCCcccc
Q 009916 79 KAVPRDDQN 87 (522)
Q Consensus 79 ~a~~~~~~~ 87 (522)
++.+++.+.
T Consensus 121 ~a~~~e~~~ 129 (136)
T 2hgl_A 121 KSHRTEMDW 129 (136)
T ss_dssp ECCHHHHHH
T ss_pred ECChHHHHH
Confidence 987665443
No 164
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=9.2e-17 Score=132.10 Aligned_cols=82 Identities=13% Similarity=0.416 Sum_probs=76.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC-cceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR-PRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~-~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
..++|||+|||.++|+++|+++|++||.|++|.|+.++.+.. ++|||||+|.++++|++|++.++ ..|+|++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999988766 89999999999999999999877 8999999999999
Q ss_pred CCCC
Q 009916 182 VPKE 185 (522)
Q Consensus 182 ~pk~ 185 (522)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 165
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=136.61 Aligned_cols=85 Identities=15% Similarity=0.334 Sum_probs=77.4
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITD-VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~-v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (522)
....++|||+|||+++|+++|+++|++||.|++ |.|+.+ .+++++|||||+|+++++|++||+++.+.|++|+|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 356789999999999999999999999999988 888888 789999999999999999999999955899999999999
Q ss_pred cCCCCCC
Q 009916 181 AVPKEFS 187 (522)
Q Consensus 181 a~pk~~~ 187 (522)
+.+++..
T Consensus 91 ~~~~~~~ 97 (104)
T 1wg5_A 91 SSRAEVR 97 (104)
T ss_dssp ECTTTSC
T ss_pred CCHHHHH
Confidence 9877653
No 166
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=132.85 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=75.8
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||+.+++++|+++|++||+|++|+|++++. ++++|||||+|.++++|++||+.++ +.|++++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 35678999999999999999999999999999999999987 8999999999999999999999877 899999999999
Q ss_pred cCC
Q 009916 181 AVP 183 (522)
Q Consensus 181 a~p 183 (522)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 167
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=1.6e-16 Score=135.85 Aligned_cols=78 Identities=24% Similarity=0.459 Sum_probs=74.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.++++|++|| ++++.|++++|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999998 8999999999999999999999 8999999999999987
Q ss_pred c
Q 009916 81 V 81 (522)
Q Consensus 81 ~ 81 (522)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 168
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=2e-16 Score=131.44 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=76.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||.++++++|+++|++||+|++|+|+++ +++++|||||+|.++++|++|++.++ ..|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999984 68899999999999999999999887 8999999999999
Q ss_pred CCCCCC
Q 009916 182 VPKEFS 187 (522)
Q Consensus 182 ~pk~~~ 187 (522)
+++...
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 987653
No 169
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=130.81 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=76.2
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
....++|||+|||+++++++|+++|++| .|++|+|+++ .+++++|||||+|.++++|++||+ ++ ..|++++|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999999 779999999999999999999999 77 899999999999
Q ss_pred cCCCCC
Q 009916 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
++++..
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 988754
No 170
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=134.67 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=77.3
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||+++++++|+++|++||+|++|+|++++. +++++||||+|.++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34678999999999999999999999999999999999984 8999999999999999999999877 899999999999
Q ss_pred cCCCCC
Q 009916 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
+++...
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 976543
No 171
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-17 Score=133.91 Aligned_cols=78 Identities=23% Similarity=0.510 Sum_probs=73.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ ++++.|+++.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 57899999999999999999999999999999999999999999999999999999999999 8999999998887654
No 172
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=7.3e-17 Score=143.74 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=78.9
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeE--EEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-C----ccCCe
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITD--VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H----ELNGK 174 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~--v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~----~l~Gr 174 (522)
....++|||+|||+++||++|+++|++||.|+. |+|++|+.++++||||||+|+++ +|++||+.++ . +|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999966 99999999999999999999999 9999999988 7 99999
Q ss_pred EEEEEEcCCCCCC
Q 009916 175 MVEVKRAVPKEFS 187 (522)
Q Consensus 175 ~I~V~~a~pk~~~ 187 (522)
+|+|++++++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999987543
No 173
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=133.82 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=73.9
Q ss_pred CCCcEEEECCCCCCCCHHHHH----HHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLK----EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~----e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~ 76 (522)
.+.++|||+|||+++++++|+ ++|++||+|++|+|++++.+ |+||||+|.++++|++|| +++..|++++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 467899999999999999999 99999999999999998865 899999999999999999 999999999999
Q ss_pred EeeccCCc
Q 009916 77 AKKAVPRD 84 (522)
Q Consensus 77 V~~a~~~~ 84 (522)
|+++.++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997654
No 174
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=145.27 Aligned_cols=85 Identities=18% Similarity=0.321 Sum_probs=76.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCe----EEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEV----VEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEA 77 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V----~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V 77 (522)
.+.++|||+|||+++||++|+++|++||+| ++|+|++++ ++++||||||+|.++++|++|| ++++.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 567899999999999999999999999985 689999985 7999999999999999999999 8889999999999
Q ss_pred eeccCCccccc
Q 009916 78 KKAVPRDDQNM 88 (522)
Q Consensus 78 ~~a~~~~~~~~ 88 (522)
..+.+++....
T Consensus 100 ~~a~~~e~~~~ 110 (123)
T 2dha_A 100 FRSTAAEVQQV 110 (123)
T ss_dssp EEECHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99877655444
No 175
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-17 Score=131.22 Aligned_cols=74 Identities=50% Similarity=0.942 Sum_probs=71.0
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ ++ +.|++++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999999999999999999999999999999989999999999999999999999 66 9999999999986
No 176
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=137.34 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=74.0
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC---CccCCeEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEV 178 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~---~~l~Gr~I~V 178 (522)
+.+.++|||+|||+++||+||+++|++||+|++|+|+++ ||||||+|+++++|++|++.++ .+|+|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999975 6899999999999999999654 5899999999
Q ss_pred EEcCCCCCCCC
Q 009916 179 KRAVPKEFSPG 189 (522)
Q Consensus 179 ~~a~pk~~~~~ 189 (522)
+++++++..+.
T Consensus 87 ~~A~~~~~~~~ 97 (105)
T 1sjq_A 87 QFSNHKELKTD 97 (105)
T ss_dssp CCCSSSSCCCT
T ss_pred EEcCCCCCCcc
Confidence 99998876543
No 177
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=145.61 Aligned_cols=83 Identities=16% Similarity=0.333 Sum_probs=77.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEE--EEEeecCCCCCcccEEEEEecCHHHHHHHH--hccc----ccCCeE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVE--AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKH----MIDGRT 74 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~--v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~----~i~Gr~ 74 (522)
...++|||+|||+++||++|+++|++||+|+. |+|++++.++++||||||+|.++ +|++|| ++++ .|++++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999977 99999999999999999999999 999999 8998 999999
Q ss_pred EEEeeccCCccc
Q 009916 75 VEAKKAVPRDDQ 86 (522)
Q Consensus 75 I~V~~a~~~~~~ 86 (522)
|.|+++.++...
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 178
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=133.16 Aligned_cols=84 Identities=30% Similarity=0.480 Sum_probs=76.5
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||+++++++|+++|++| .+|++++++.+++++|||||+|.++++|++||+.++ ++|++++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34577899999999999999999999977 478899999999999999999999999999999877 89999999999
Q ss_pred EcCCCCCC
Q 009916 180 RAVPKEFS 187 (522)
Q Consensus 180 ~a~pk~~~ 187 (522)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99987653
No 179
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-17 Score=141.58 Aligned_cols=83 Identities=19% Similarity=0.417 Sum_probs=77.5
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||.++++++|+++|++||.|++|+|+.++.+++++|||||+|.++++|++|| .++ +.|+|++|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999 655 8999999999999
Q ss_pred CCCCC
Q 009916 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87654
No 180
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=7.1e-17 Score=134.96 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=74.9
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||+++++++|+++|++||+|++++++.++.+++++|||||+|.++++|++||+.++ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999999877 8999999999987
Q ss_pred CC
Q 009916 182 VP 183 (522)
Q Consensus 182 ~p 183 (522)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 181
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=5.3e-17 Score=137.80 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=74.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecC-CCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDR-ATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~-~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++|| ++++.|++++|.|+++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 4679999999999999999999999999 9999999998 68999999999999999999999 9999999999999999
Q ss_pred cCCc
Q 009916 81 VPRD 84 (522)
Q Consensus 81 ~~~~ 84 (522)
.++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 7754
No 182
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=4.1e-17 Score=130.41 Aligned_cols=74 Identities=35% Similarity=0.635 Sum_probs=71.0
Q ss_pred EEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeec
Q 009916 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a 80 (522)
+|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ ++.+.|++++|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999999999999999999999999999999999 8889999999999875
No 183
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=3e-16 Score=134.17 Aligned_cols=81 Identities=21% Similarity=0.427 Sum_probs=76.4
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||+.+++++|+++|++||+|++|+|++++ +++++|||||+|.++++|++||+.++ ..|+|++|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34578899999999999999999999999999999999999 89999999999999999999999877 89999999999
Q ss_pred EcC
Q 009916 180 RAV 182 (522)
Q Consensus 180 ~a~ 182 (522)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 184
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=1.1e-16 Score=140.79 Aligned_cols=81 Identities=21% Similarity=0.520 Sum_probs=76.8
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeeccC
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~~ 82 (522)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++++.|++++|.|+++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 4689999999999999999999999999999999999989999999999999999999999 999999999999999875
Q ss_pred Cc
Q 009916 83 RD 84 (522)
Q Consensus 83 ~~ 84 (522)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 185
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.9e-17 Score=136.35 Aligned_cols=85 Identities=25% Similarity=0.562 Sum_probs=79.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||..+++++|+++|++||.|++|.|++++.+++++|||||+|.++++|++|++.++ ..|+|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 356799999999999999999999999999999999999999999999999999999999999888 8999999999999
Q ss_pred CCCCCC
Q 009916 182 VPKEFS 187 (522)
Q Consensus 182 ~pk~~~ 187 (522)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 987653
No 186
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=136.77 Aligned_cols=85 Identities=21% Similarity=0.377 Sum_probs=77.6
Q ss_pred CCCcceeEecCCCCCCCHHHHH---HHHhhcCCeeEEEEEecCCCC---CcceEEEEEecCHHHHHHHHHhcC-CccCCe
Q 009916 102 PGRTKKIFVGGLASTVTESDFK---KYFDQFGTITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDRVLHKTF-HELNGK 174 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~---~~F~~fG~V~~v~i~~d~~tg---~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr 174 (522)
..+.++|||+|||+++++++|+ ++|++||+|++|.|++++.++ +++|||||+|+++++|++||+.++ ++|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3467899999999999999999 999999999999999988754 566999999999999999999987 899999
Q ss_pred EEEEEEcCCCCC
Q 009916 175 MVEVKRAVPKEF 186 (522)
Q Consensus 175 ~I~V~~a~pk~~ 186 (522)
+|+|++++++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998864
No 187
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.5e-17 Score=129.40 Aligned_cols=76 Identities=42% Similarity=0.784 Sum_probs=73.6
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
++|||+|||.++++++|+++|++||+|++|.+++++.+++++|||||+|.++++|++|++.++..|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999987
No 188
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=137.98 Aligned_cols=88 Identities=25% Similarity=0.349 Sum_probs=76.1
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||.++|+++|+++|++||.|+.+.+..+..+++++|||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999555444443478899999999999999999999888 899999999999
Q ss_pred cCCCCCCCC
Q 009916 181 AVPKEFSPG 189 (522)
Q Consensus 181 a~pk~~~~~ 189 (522)
++++..+..
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998876543
No 189
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=138.82 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=77.8
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V-~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (522)
+.+.++|||+|||+++|+++|+++|++||.| ..|+|++|+ +++++|||||+|.++++|++||++..++|++++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3467899999999999999999999999999 899999999 89999999999999999999999944899999999999
Q ss_pred cCCCCC
Q 009916 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
+.+++.
T Consensus 91 a~~~~~ 96 (114)
T 2cpy_A 91 VTLEDM 96 (114)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 998763
No 190
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.1e-16 Score=133.19 Aligned_cols=86 Identities=22% Similarity=0.395 Sum_probs=79.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCC-eeEEEEE-ecCCCCCcceEEEEEecCHHHHHHHHHhcC---CccCCeEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGT-ITDVVVM-YDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVE 177 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~-V~~v~i~-~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~---~~l~Gr~I~ 177 (522)
.+.++|||+|||+++|+++|+++|++||. |++|.|+ .++.+++++|||||+|.++++|++||+.++ ..|+|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999999 888889999999999999999999999874 689999999
Q ss_pred EEEcCCCCCCC
Q 009916 178 VKRAVPKEFSP 188 (522)
Q Consensus 178 V~~a~pk~~~~ 188 (522)
|++++++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999877643
No 191
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=134.46 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=73.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++++||||+|.++++|++|| ++.+.|++++|.|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 56799999999999999999999999999999999664 468999999999999999999 8999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87644
No 192
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-17 Score=144.48 Aligned_cols=83 Identities=16% Similarity=0.360 Sum_probs=77.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++||++|+++|++||+|++++++.+..+++++|||||+|.++++|++|| ++++.|++++|+|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45689999999999999999999999999998777777778999999999999999999999 99999999999999998
Q ss_pred CCcc
Q 009916 82 PRDD 85 (522)
Q Consensus 82 ~~~~ 85 (522)
+++.
T Consensus 103 ~~~~ 106 (124)
T 1wel_A 103 KKGM 106 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 193
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=3e-17 Score=141.17 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=77.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCC---eEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGE---VVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~---V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~ 78 (522)
.+.++|||+|||+++|+++|+++|++||+ |.+|+|++++. ++++|||||+|.++++|++|| ++++.|.+|.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 56789999999999999999999999988 89999999987 999999999999999999999 99999999999999
Q ss_pred eccCCcccc
Q 009916 79 KAVPRDDQN 87 (522)
Q Consensus 79 ~a~~~~~~~ 87 (522)
++.+++...
T Consensus 88 ~a~~~~~~~ 96 (107)
T 2lmi_A 88 EINNEDVDA 96 (107)
T ss_dssp ECCHHHHHH
T ss_pred ECCHHHHHH
Confidence 988765443
No 194
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=145.14 Aligned_cols=82 Identities=20% Similarity=0.385 Sum_probs=77.1
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG--~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..++|||+|||+++||++|+++|++|| .|++|+|++|+.++++||||||+|.++++|++||+.++ .+|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999988 899999999999
Q ss_pred cCCCC
Q 009916 181 AVPKE 185 (522)
Q Consensus 181 a~pk~ 185 (522)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98754
No 195
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=9.1e-16 Score=135.02 Aligned_cols=87 Identities=20% Similarity=0.367 Sum_probs=80.2
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
.....++|||+|||..+++++|+++|++||+|++|+|++++ +++++|||||+|.++++|++|++.++ ..|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34577899999999999999999999999999999999998 89999999999999999999999877 89999999999
Q ss_pred EcCCCCCCC
Q 009916 180 RAVPKEFSP 188 (522)
Q Consensus 180 ~a~pk~~~~ 188 (522)
+|.++...+
T Consensus 110 ~a~~~~~~~ 118 (124)
T 2kt5_A 110 LVASQIDLE 118 (124)
T ss_dssp EECCTTCCC
T ss_pred EeCCCCCCC
Confidence 999876543
No 196
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.1e-16 Score=144.30 Aligned_cols=84 Identities=19% Similarity=0.317 Sum_probs=77.3
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGT---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMV 176 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~---V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I 176 (522)
.....++|||+|||+++||+||+++|++||+ |++|+|++|+. +++||||||+|+++++|++||+ ++ ++|++|+|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999998 9999999999999999999999 66 89999999
Q ss_pred EEEEcCCCCC
Q 009916 177 EVKRAVPKEF 186 (522)
Q Consensus 177 ~V~~a~pk~~ 186 (522)
+|.++.+++.
T Consensus 118 ~V~~a~~~e~ 127 (136)
T 2hgl_A 118 EVFKSHRTEM 127 (136)
T ss_dssp EEEECCHHHH
T ss_pred EEEECChHHH
Confidence 9999987653
No 197
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=3e-17 Score=148.44 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=74.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (522)
...++|||+|||+++||+||+++|++|| |++|+|++|++ +++||||||+|+++++|++||+++.++|++|.|+|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4567999999999999999999999999 67999999987 999999999999999999999544489999999999998
Q ss_pred CCCC
Q 009916 183 PKEF 186 (522)
Q Consensus 183 pk~~ 186 (522)
+++.
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7664
No 198
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=4.4e-16 Score=137.04 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=77.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|.++++|++|+ ++++.|++++|.|+++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999 8999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 77543
No 199
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=135.96 Aligned_cols=80 Identities=13% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (522)
...++|||+|||+++|+++|+++|++||+|++|.|++|+. +++||||||+|+++++|++||++..++|+|++|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4568999999999999999999999999999999999988 999999999999999999999954489999999999877
Q ss_pred C
Q 009916 183 P 183 (522)
Q Consensus 183 p 183 (522)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 200
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.2e-16 Score=132.19 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=73.0
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC---CccCCeEEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEVK 179 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~---~~l~Gr~I~V~ 179 (522)
.+.++|||+|||++++|++|+++|++||.|++|.|+++ ||||||+|+++++|++|++.++ .+|.|++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998865 7899999999999999999753 57999999999
Q ss_pred EcCCCCCCCC
Q 009916 180 RAVPKEFSPG 189 (522)
Q Consensus 180 ~a~pk~~~~~ 189 (522)
+++++.....
T Consensus 87 ~a~~~~~~~~ 96 (101)
T 2cq1_A 87 YSNHKELKTS 96 (101)
T ss_dssp ECSCSSCCCC
T ss_pred EcCcccCcCC
Confidence 9998876553
No 201
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=1.2e-16 Score=143.58 Aligned_cols=83 Identities=33% Similarity=0.546 Sum_probs=78.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87544
No 202
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.2e-16 Score=127.89 Aligned_cols=75 Identities=53% Similarity=0.977 Sum_probs=71.1
Q ss_pred eeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 107 ~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
+|||+|||+++++++|+++|++||+|++|.+++++.+++++|||||+|.++++|++|+++..+.|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999999999985448999999999875
No 203
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=1.2e-15 Score=129.81 Aligned_cols=80 Identities=29% Similarity=0.509 Sum_probs=72.6
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||+++|+++|+++|++||+|++|+|+ ++||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3567899999999999999999999999999999987 3499999999999999999877 899999999999
Q ss_pred cCCCCCCCC
Q 009916 181 AVPKEFSPG 189 (522)
Q Consensus 181 a~pk~~~~~ 189 (522)
++++.....
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 998876543
No 204
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=131.44 Aligned_cols=82 Identities=21% Similarity=0.426 Sum_probs=73.5
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||+++|+++|+++|++||.| +|+.+ .+++++|||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3567899999999999999999999999977 56666 678899999999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 009916 181 AVPKEFS 187 (522)
Q Consensus 181 a~pk~~~ 187 (522)
++++...
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9987543
No 205
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=8.9e-17 Score=142.94 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=73.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeE--EEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEee
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVV--EAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~--~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~ 79 (522)
.+.++|||+|||+++||++|+++|++| .|+ +|+|+++++ +++||||||+|.++++|++|| ++++.|++|.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 457899999999999999999999999 677 899999987 999999999999999999999 778999999999998
Q ss_pred ccCCc
Q 009916 80 AVPRD 84 (522)
Q Consensus 80 a~~~~ 84 (522)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86554
No 206
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=6e-16 Score=135.96 Aligned_cols=82 Identities=18% Similarity=0.435 Sum_probs=76.5
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
..++|||+|||.++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| .++ +.|+|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999999999999999999999999999 566 89999999999998
Q ss_pred CCCC
Q 009916 183 PKEF 186 (522)
Q Consensus 183 pk~~ 186 (522)
++..
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 207
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=4.7e-17 Score=134.83 Aligned_cols=80 Identities=29% Similarity=0.646 Sum_probs=72.0
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeeccCC
Q 009916 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~~~ 83 (522)
++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+++ |++|+ ++++.|++++|.|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 78999999999999999999999999999999999999999999999999999 99999 8999999999999999876
Q ss_pred ccc
Q 009916 84 DDQ 86 (522)
Q Consensus 84 ~~~ 86 (522)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 208
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=128.00 Aligned_cols=79 Identities=20% Similarity=0.507 Sum_probs=72.4
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||.++++++|+++|++||+|++|+|+ |+||||+|+++++|++|++.++ .+|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3567899999999999999999999999999999997 5699999999999999999888 799999999999
Q ss_pred cCCCCCCC
Q 009916 181 AVPKEFSP 188 (522)
Q Consensus 181 a~pk~~~~ 188 (522)
++++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 209
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.2e-16 Score=135.63 Aligned_cols=82 Identities=29% Similarity=0.632 Sum_probs=76.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHhcccccCCeEEEEeeccC
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~n~~~i~Gr~I~V~~a~~ 82 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|.++++|++|+.+++.|++++|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 457899999999999999999999999999999999998 8999999999999999999999888899999999999876
Q ss_pred Ccc
Q 009916 83 RDD 85 (522)
Q Consensus 83 ~~~ 85 (522)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 654
No 210
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=137.46 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=74.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (522)
....+|||+|||+++|++||+++|++| .|++|+|++|+. ++++|||||+|.++++|++||+++.++|++|.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 346799999999999999999999999 899999999987 899999999999999999999655589999999999997
Q ss_pred CCC
Q 009916 183 PKE 185 (522)
Q Consensus 183 pk~ 185 (522)
+++
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 211
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=1.1e-16 Score=127.94 Aligned_cols=75 Identities=37% Similarity=0.741 Sum_probs=72.0
Q ss_pred eeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 107 ~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
+|||+|||.++++++|+++|++||+|++|.+++++.+++++|||||+|.++++|++|++++++.|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999998778999999999875
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.65 E-value=3.8e-16 Score=142.88 Aligned_cols=83 Identities=33% Similarity=0.546 Sum_probs=78.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|| ++++.|.+++|.|+++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999989999999999999999999999 7999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87543
No 213
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=137.06 Aligned_cols=81 Identities=22% Similarity=0.424 Sum_probs=75.1
Q ss_pred CCcEEEECCCCCCCCHHHHH---HHHhccCCeEEEEEeecCCCC---CcccEEEEEecCHHHHHHHH--hcccccCCeEE
Q 009916 4 DLGKLFIGGISWDTDEERLK---EYFSRYGEVVEAVIMRDRATG---RARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~---e~F~~~G~V~~v~i~~d~~tg---~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I 75 (522)
..++|||+|||++++|++|+ ++|++||+|++|+|++++.++ +++|||||+|.++++|++|| ++++.|++++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 56899999999999999999 999999999999999987654 56699999999999999999 79999999999
Q ss_pred EEeeccCCc
Q 009916 76 EAKKAVPRD 84 (522)
Q Consensus 76 ~V~~a~~~~ 84 (522)
.|+++.++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998775
No 214
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.4e-16 Score=132.18 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=71.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCC-----eEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG-----RTV 75 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~G-----r~I 75 (522)
...++|||+|||+++|+++|+++|++||+|++|+|+++ +||||+|.++++|++|| +++++|++ ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 46789999999999999999999999999999999886 79999999999999999 89999999 999
Q ss_pred EEeeccCCccc
Q 009916 76 EAKKAVPRDDQ 86 (522)
Q Consensus 76 ~V~~a~~~~~~ 86 (522)
+|+++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999886543
No 215
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.4e-16 Score=134.21 Aligned_cols=80 Identities=28% Similarity=0.528 Sum_probs=73.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hccccc--------CC
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI--------DG 72 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i--------~G 72 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ +++++|||||+|.++++|++|| +++..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 567999999999999999999999999999999999998 8999999999999999999999 899988 46
Q ss_pred eEEEEeeccCC
Q 009916 73 RTVEAKKAVPR 83 (522)
Q Consensus 73 r~I~V~~a~~~ 83 (522)
++|.|+++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77888887654
No 216
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=139.05 Aligned_cols=78 Identities=29% Similarity=0.503 Sum_probs=74.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|| ++++.|++++|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 56899999999999999999999999999999999999989999999999999999999999 8999999999999875
No 217
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-16 Score=135.51 Aligned_cols=84 Identities=17% Similarity=0.364 Sum_probs=76.7
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|.++++|++||+ ++ ..|.+++|+|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999988 777888889999999999999999999999 66 8999999999999
Q ss_pred CCCCCCC
Q 009916 182 VPKEFSP 188 (522)
Q Consensus 182 ~pk~~~~ 188 (522)
+++...+
T Consensus 93 ~~~~~~~ 99 (101)
T 1fj7_A 93 KGRDGTR 99 (101)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 9876543
No 218
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=131.35 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=71.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC---CccCCeEEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEVK 179 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~---~~l~Gr~I~V~ 179 (522)
.+.++|||+|||++++|++|+++|++||.|++|.|+++ ||||||+|+++++|++|++.++ .+|+|++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999998854 6899999999999999999764 36999999999
Q ss_pred EcCCCCCC
Q 009916 180 RAVPKEFS 187 (522)
Q Consensus 180 ~a~pk~~~ 187 (522)
+++++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99987654
No 219
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=2.4e-16 Score=153.98 Aligned_cols=80 Identities=24% Similarity=0.494 Sum_probs=74.8
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G--~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.++|||+|||+++||++|+++|++|| +|++|+|++++.++++||||||+|.+.++|++|| +++++|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 9999999999999999999999999999999999 899999999999998
Q ss_pred ccCC
Q 009916 80 AVPR 83 (522)
Q Consensus 80 a~~~ 83 (522)
+.++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 220
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.4e-16 Score=131.86 Aligned_cols=80 Identities=24% Similarity=0.493 Sum_probs=72.6
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++|+++|+++|++||+| +|+++ .++++++||||+|.++++|++|| ++++.|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4578999999999999999999999999977 56666 57899999999999999999999 899999999999999
Q ss_pred ccCCcc
Q 009916 80 AVPRDD 85 (522)
Q Consensus 80 a~~~~~ 85 (522)
+.++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987654
No 221
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7e-16 Score=131.89 Aligned_cols=78 Identities=10% Similarity=0.172 Sum_probs=70.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--h--cccccCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M--DKHMIDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~--n~~~i~Gr~I~V~ 78 (522)
...++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ + +...|++++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998874 689999999999999999 3 4678999999999
Q ss_pred eccCCccc
Q 009916 79 KAVPRDDQ 86 (522)
Q Consensus 79 ~a~~~~~~ 86 (522)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99876544
No 222
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.5e-16 Score=135.59 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=73.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC---CccCCeEEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEVK 179 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~---~~l~Gr~I~V~ 179 (522)
.+.++|||+|||+++||++|+++|++||.|++|.|+++ ||||||+|+++++|++|++.++ .+|.|++|+|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 46789999999999999999999999999999999976 6899999999999999999775 47999999999
Q ss_pred EcCCCCCCC
Q 009916 180 RAVPKEFSP 188 (522)
Q Consensus 180 ~a~pk~~~~ 188 (522)
++++++..+
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 999887654
No 223
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=135.51 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=74.0
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH-NTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~-~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
....++|||+|||.++++++|+++|++|| |++|+|++++ .+++++|||||+|.++++|++|| .++ ..|+|++|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45678999999999999999999999999 9999999998 68999999999999999999999 566 89999999999
Q ss_pred EcCCCC
Q 009916 180 RAVPKE 185 (522)
Q Consensus 180 ~a~pk~ 185 (522)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 224
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=1.3e-16 Score=132.22 Aligned_cols=81 Identities=33% Similarity=0.673 Sum_probs=72.9
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 009916 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|++++ |++|++.++ ..|+|++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 999999988 8999999999999987
Q ss_pred CCC
Q 009916 185 EFS 187 (522)
Q Consensus 185 ~~~ 187 (522)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 225
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-16 Score=131.40 Aligned_cols=80 Identities=20% Similarity=0.461 Sum_probs=74.5
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.++++|++|++.++ ..|+++.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999999999999999999999999999999999888 8999999887665
Q ss_pred C
Q 009916 182 V 182 (522)
Q Consensus 182 ~ 182 (522)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 226
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.4e-16 Score=136.00 Aligned_cols=79 Identities=10% Similarity=0.225 Sum_probs=71.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hc--ccccCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n--~~~i~Gr~I~V~ 78 (522)
...++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|.++++|++|+ ++ ...|.+++|.|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999875 689999999999999999 44 468999999999
Q ss_pred eccCCcccc
Q 009916 79 KAVPRDDQN 87 (522)
Q Consensus 79 ~a~~~~~~~ 87 (522)
++.++....
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998766544
No 227
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=3.2e-16 Score=137.28 Aligned_cols=83 Identities=20% Similarity=0.361 Sum_probs=76.5
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGT---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~---V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V 178 (522)
....++|||+|||+++|+++|+++|++||. |+.|+|++++. ++++|||||+|.++++|++||++..++|++|.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 346789999999999999999999999999 89999999988 99999999999999999999995448999999999
Q ss_pred EEcCCCC
Q 009916 179 KRAVPKE 185 (522)
Q Consensus 179 ~~a~pk~ 185 (522)
.++.+++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998765
No 228
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.8e-16 Score=133.58 Aligned_cols=83 Identities=27% Similarity=0.605 Sum_probs=76.2
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
.....++|||+|||.++++++|+++|++||+|++|+|++++. .++|||||+|.++++|++|++.++ ..|+|++|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999864 489999999999999999999877 89999999999
Q ss_pred EcCCCC
Q 009916 180 RAVPKE 185 (522)
Q Consensus 180 ~a~pk~ 185 (522)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998864
No 229
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.9e-16 Score=127.04 Aligned_cols=77 Identities=27% Similarity=0.585 Sum_probs=71.1
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
..+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||+|.++++|++|+ +++..|++++|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3578999999999999999999999999999999997 479999999999999999 899999999999999
Q ss_pred ccCCccc
Q 009916 80 AVPRDDQ 86 (522)
Q Consensus 80 a~~~~~~ 86 (522)
+.++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 230
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=8.7e-17 Score=145.43 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=74.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++||+||+++|++|| |++|+|+++++ +++||||||+|.++++|++|| ++++.|++|.|+|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 66999999986 999999999999999999999 99999999999999887
Q ss_pred CCcc
Q 009916 82 PRDD 85 (522)
Q Consensus 82 ~~~~ 85 (522)
+++.
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6654
No 231
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=132.26 Aligned_cols=82 Identities=17% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc--------C
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL--------N 172 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l--------~ 172 (522)
..+.++|||+|||.++++++|+++|++||.|++|+|++++ +++++|||||+|.++++|++||+.++ ..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3467899999999999999999999999999999999998 89999999999999999999999887 777 5
Q ss_pred CeEEEEEEcCCC
Q 009916 173 GKMVEVKRAVPK 184 (522)
Q Consensus 173 Gr~I~V~~a~pk 184 (522)
+++|.|+++.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999865
No 232
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.2e-16 Score=131.80 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=69.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hc--ccccCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n--~~~i~Gr~I~V~ 78 (522)
..+++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ ++ ...|++++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999998864 689999999999999999 44 356999999999
Q ss_pred eccCCccc
Q 009916 79 KAVPRDDQ 86 (522)
Q Consensus 79 ~a~~~~~~ 86 (522)
++.++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876544
No 233
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=6.8e-17 Score=136.88 Aligned_cols=82 Identities=24% Similarity=0.334 Sum_probs=75.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||+|||+++|+++|+++|++||+|.. ++++++.++++||||||+|.++++|++|| ++++.|++++|.|+++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 36789999999999999999999999999988 77777778999999999999999999999 99999999999999998
Q ss_pred CCcc
Q 009916 82 PRDD 85 (522)
Q Consensus 82 ~~~~ 85 (522)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 234
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=134.17 Aligned_cols=80 Identities=26% Similarity=0.607 Sum_probs=74.6
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++ ++++|||||+|.++++|++|+ ++++.|++++|.|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3568999999999999999999999999999999999986 358999999999999999999 899999999999999
Q ss_pred ccCC
Q 009916 80 AVPR 83 (522)
Q Consensus 80 a~~~ 83 (522)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9765
No 235
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=125.80 Aligned_cols=78 Identities=18% Similarity=0.413 Sum_probs=71.6
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
....++|||+|||.++++++|+++|++||.|++|.|+++ ||||+|+++++|++|++.++ ++|++++|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 457789999999999999999999999999999999843 99999999999999999887 899999999999
Q ss_pred cCCCCCC
Q 009916 181 AVPKEFS 187 (522)
Q Consensus 181 a~pk~~~ 187 (522)
++++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9987654
No 236
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.2e-16 Score=139.16 Aligned_cols=83 Identities=13% Similarity=0.298 Sum_probs=76.7
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
....++|||+|||+++|+++|+++|++||.|+++.++.+..+++++|||||+|.++++|++||+ ++ +.|++++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3466899999999999999999999999999998888888899999999999999999999999 56 899999999999
Q ss_pred cCCCC
Q 009916 181 AVPKE 185 (522)
Q Consensus 181 a~pk~ 185 (522)
+.+++
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98765
No 237
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=132.31 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=70.4
Q ss_pred CCcceeEecCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC---CccCCeEEEE
Q 009916 103 GRTKKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEV 178 (522)
Q Consensus 103 ~~~~~LfVgnLp~-~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~---~~l~Gr~I~V 178 (522)
.+.++|||+|||+ ++||+||+++|++||.|++|.|+++ |+||||+|+++++|++||+.++ .+|.||+|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999865 4699999999999999999876 3599999999
Q ss_pred EEcCCCCC
Q 009916 179 KRAVPKEF 186 (522)
Q Consensus 179 ~~a~pk~~ 186 (522)
.+++++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 238
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=131.05 Aligned_cols=81 Identities=41% Similarity=0.578 Sum_probs=74.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++| .+|++++++.++++++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 567999999999999999999999977 47889999889999999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 876543
No 239
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=1e-15 Score=131.92 Aligned_cols=76 Identities=21% Similarity=0.481 Sum_probs=69.5
Q ss_pred CCcceeEecCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 103 GRTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 103 ~~~~~LfVgnLp~~-vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
...++|||+|||++ +++++|+++|++||+|++|.| +++||||+|+++++|++||+.++ .+|++++|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999998 47899999999999999998887 899999999999
Q ss_pred cCCCCC
Q 009916 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
++++..
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 986544
No 240
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=135.41 Aligned_cols=81 Identities=30% Similarity=0.546 Sum_probs=75.9
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
...+.++|||+|||..+++++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.++ ..|+|++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999998
Q ss_pred Ec
Q 009916 180 RA 181 (522)
Q Consensus 180 ~a 181 (522)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 241
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=129.82 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=70.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-C--ccCCeEEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H--ELNGKMVEVK 179 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~--~l~Gr~I~V~ 179 (522)
.++++|||+|||+++|+++|+++|++||.|++|++++ .||||||+|+++++|++|++.++ . .|.||+|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4678999999999999999999999999999999985 36899999999999999999887 4 4899999999
Q ss_pred EcCCCC
Q 009916 180 RAVPKE 185 (522)
Q Consensus 180 ~a~pk~ 185 (522)
++++++
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998875
No 242
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.7e-15 Score=128.89 Aligned_cols=78 Identities=22% Similarity=0.445 Sum_probs=71.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|++|+|++ +||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4578999999999999999999999999999999874 49999999999999999 8999999999999999
Q ss_pred cCCccccc
Q 009916 81 VPRDDQNM 88 (522)
Q Consensus 81 ~~~~~~~~ 88 (522)
.++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 88765543
No 243
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=2.2e-16 Score=140.40 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=75.8
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCee--EEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTIT--DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~--~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~ 179 (522)
..+.++|||+|||+++||++|+++|++| .|+ +|+|++|++ +++||||||+|+++++|++||++++.+|++|.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3467889999999999999999999999 676 899999988 999999999999999999999987799999999999
Q ss_pred EcCCCCC
Q 009916 180 RAVPKEF 186 (522)
Q Consensus 180 ~a~pk~~ 186 (522)
.+.+++.
T Consensus 117 ~a~~~e~ 123 (126)
T 2hgm_A 117 KSSQEEV 123 (126)
T ss_dssp EECHHHH
T ss_pred ECCHHHh
Confidence 9987653
No 244
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=128.47 Aligned_cols=79 Identities=24% Similarity=0.416 Sum_probs=72.1
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccC--CeEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN--GKMVEV 178 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~--Gr~I~V 178 (522)
..+.++|||+|||+++++++|+++|++||+|++|+++++ ++||||+|.++++|++|++.++ ..|+ +++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 346789999999999999999999999999999999754 6799999999999999999887 8999 999999
Q ss_pred EEcCCCCC
Q 009916 179 KRAVPKEF 186 (522)
Q Consensus 179 ~~a~pk~~ 186 (522)
++++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99998753
No 245
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.62 E-value=1.2e-15 Score=141.26 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=77.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|+.|.|++++.+++++|||||+|.++++|++|| ++++.|.+++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876543
No 246
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=129.23 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=68.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccc--cCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHM--IDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~--i~Gr~I~V~ 78 (522)
..+++|||+|||.++||++|+++|++||+|++|+|++ .|+||||+|.+.++|++|+ ++... |.+|+|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4678999999999999999999999999999999985 3689999999999999999 66554 889999999
Q ss_pred eccCCc
Q 009916 79 KAVPRD 84 (522)
Q Consensus 79 ~a~~~~ 84 (522)
++++++
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 997754
No 247
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=8.3e-16 Score=127.56 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=67.5
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeecc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~ 81 (522)
-+.-|||+||++++||++|+++|.+||+|++++|+. +||||||+|.++++|++|+ +|..++.+|+|+|+.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357899999999999999999999999999999965 6899999999999999999 99999999999999874
No 248
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=124.88 Aligned_cols=78 Identities=23% Similarity=0.471 Sum_probs=71.3
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999843 99999999999999999887 899999999999
Q ss_pred cCCCCCC
Q 009916 181 AVPKEFS 187 (522)
Q Consensus 181 a~pk~~~ 187 (522)
++++...
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9987543
No 249
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=129.06 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=71.8
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 009916 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
++|||+|||+++|+++|+++|++||+|++|.|+++ +++||||+|.++++|++|++.++ .+|+|++|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999977 68899999999999999999877 8999999999999987
Q ss_pred CCC
Q 009916 185 EFS 187 (522)
Q Consensus 185 ~~~ 187 (522)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 250
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-15 Score=125.96 Aligned_cols=78 Identities=22% Similarity=0.390 Sum_probs=70.7
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~f--G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
..+.++|||+|||+++|+++|+++|++| |.|++|+++ ++||||+|.++++|++||+.++ ..|++++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999988875 5699999999999999999877 8999999999
Q ss_pred EEcCCCCCC
Q 009916 179 KRAVPKEFS 187 (522)
Q Consensus 179 ~~a~pk~~~ 187 (522)
++++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999987653
No 251
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=129.67 Aligned_cols=80 Identities=19% Similarity=0.446 Sum_probs=73.5
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||..+++++|+++|++||.|++|+|+++ ++||||+|.++++|++||+.++ ..|+|++|+|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 46789999999999999999999999999999999876 6799999999999999998877 8999999999999
Q ss_pred CCCCCCC
Q 009916 182 VPKEFSP 188 (522)
Q Consensus 182 ~pk~~~~ 188 (522)
+++....
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 9876543
No 252
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=127.39 Aligned_cols=79 Identities=27% Similarity=0.504 Sum_probs=72.5
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|||.++++++|+++|++||+|++|+|+++ |+||||+|.++++|++|++.++ .+|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 356789999999999999999999999999999999854 6799999999999999999888 899999999999
Q ss_pred cCCCCC
Q 009916 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 998664
No 253
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=8e-16 Score=131.72 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=72.7
Q ss_pred CCcEEEECCCCCCC------CHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCe-E
Q 009916 4 DLGKLFIGGISWDT------DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGR-T 74 (522)
Q Consensus 4 d~r~LfVgnLP~~~------teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr-~ 74 (522)
..++|||+|||+++ |+++|+++|++||+|++|+|+ +.+++++|||||+|.++++|++|| ++++.|+++ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 357899999999999999999999 899999998 9
Q ss_pred EEEeeccCCc
Q 009916 75 VEAKKAVPRD 84 (522)
Q Consensus 75 I~V~~a~~~~ 84 (522)
|.|+++.+.+
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987654
No 254
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=129.91 Aligned_cols=78 Identities=22% Similarity=0.469 Sum_probs=72.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++++++|+++|++||+|++|+|+++ ++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 46789999999999999999999999999999999886 689999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876543
No 255
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=4.1e-17 Score=141.98 Aligned_cols=85 Identities=28% Similarity=0.483 Sum_probs=79.8
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEE--------EEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccC
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVE--------AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID 71 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~--------v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~ 71 (522)
+.+.++|||+|||+++++++|+++|++||+|.+ |+|++++.+++++|||||+|.++++|++|| +++..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 567899999999999999999999999999999 899999889999999999999999999999 8999999
Q ss_pred CeEEEEeeccCCccc
Q 009916 72 GRTVEAKKAVPRDDQ 86 (522)
Q Consensus 72 Gr~I~V~~a~~~~~~ 86 (522)
+++|.|+++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876554
No 256
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=4.2e-17 Score=141.95 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=79.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCC
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITD--------VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG 173 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~--------v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~G 173 (522)
.+.++|||+|||.++++++|+++|++||.|+. |.|+.++.+++++|||||+|.++++|++||+.++ ..|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999998 9999999999999999999999999999999888 89999
Q ss_pred eEEEEEEcCCCCCC
Q 009916 174 KMVEVKRAVPKEFS 187 (522)
Q Consensus 174 r~I~V~~a~pk~~~ 187 (522)
++|+|++++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987653
No 257
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=127.76 Aligned_cols=76 Identities=17% Similarity=0.335 Sum_probs=70.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccC--CeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID--GRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~--Gr~I~V~ 78 (522)
...++|||+|||+++||++|+++|++||+|++|+|+++ ++||||+|.++++|++|+ ++++.|+ +++|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45789999999999999999999999999999999764 679999999999999999 8999999 9999999
Q ss_pred eccCCc
Q 009916 79 KAVPRD 84 (522)
Q Consensus 79 ~a~~~~ 84 (522)
++.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998764
No 258
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=126.16 Aligned_cols=81 Identities=26% Similarity=0.490 Sum_probs=71.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||+++|+++|+++|++||+|++| +.++.+++ ||||+|.++++|++||+ ++ +.|+|++|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356799999999999999999999999999987 66666655 99999999999999999 66 8999999999999
Q ss_pred CCCCCCCC
Q 009916 182 VPKEFSPG 189 (522)
Q Consensus 182 ~pk~~~~~ 189 (522)
.++.....
T Consensus 80 ~~~~~~~~ 87 (94)
T 2e5g_A 80 EQKEFQSP 87 (94)
T ss_dssp CCSCCCCC
T ss_pred CcCCCCCC
Confidence 87765543
No 259
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=126.86 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||+++++++|+++|++||.|+ ++++.+ +++|||||+|.++++|++||+.++ ..|+|++|+|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4578999999999999999999999999997 677754 568999999999999999999888 8999999999999
Q ss_pred CCCCC
Q 009916 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88753
No 260
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=7.8e-16 Score=130.57 Aligned_cols=83 Identities=22% Similarity=0.579 Sum_probs=76.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (522)
...++|||+|||+++++++|+++|++||.|++|+|++++ +++++|||||+|+++++|++||+ ..+.|+|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 356899999999999999999999999999999999998 89999999999999999999998 5589999999999998
Q ss_pred CCCCC
Q 009916 183 PKEFS 187 (522)
Q Consensus 183 pk~~~ 187 (522)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 77653
No 261
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=131.00 Aligned_cols=77 Identities=12% Similarity=0.167 Sum_probs=68.8
Q ss_pred CCCcEEEECCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcc--cccCCeEEEE
Q 009916 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDK--HMIDGRTVEA 77 (522)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~--~~i~Gr~I~V 77 (522)
.++++|||+|||+ ++||+||+++|++||+|++|+|+++ |+||||+|.++++|++|| ++. ..|++++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999875 379999999999999999 554 4699999999
Q ss_pred eeccCCcc
Q 009916 78 KKAVPRDD 85 (522)
Q Consensus 78 ~~a~~~~~ 85 (522)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 262
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=7.7e-16 Score=125.30 Aligned_cols=71 Identities=18% Similarity=0.378 Sum_probs=65.7
Q ss_pred CcEEEECCCCCCC------CHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCe-EE
Q 009916 5 LGKLFIGGISWDT------DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGR-TV 75 (522)
Q Consensus 5 ~r~LfVgnLP~~~------teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr-~I 75 (522)
+++|||+|||+++ ++++|+++|++||+|++|+|+ +.+++++|||||+|.++++|++|+ +++..|+++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 357899999999999999999999 899999999 88
Q ss_pred EE
Q 009916 76 EA 77 (522)
Q Consensus 76 ~V 77 (522)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 263
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.4e-15 Score=126.60 Aligned_cols=78 Identities=35% Similarity=0.611 Sum_probs=65.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHhcccccCCeEEEEeeccC
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~n~~~i~Gr~I~V~~a~~ 82 (522)
...++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|.++++|+++....+.+++++|.|+++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 46789999999999999999999999999999999874 7899999999999999765545667899999999987
Q ss_pred Ccc
Q 009916 83 RDD 85 (522)
Q Consensus 83 ~~~ 85 (522)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 264
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.6e-16 Score=137.74 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=75.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCe----eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTI----TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V----~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V 178 (522)
....+|||+|||+++|++||+++|++||+| ++|+|++|+ +++++|||||+|+++++|++||+++.+.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 356799999999999999999999999875 689999985 799999999999999999999998558999999999
Q ss_pred EEcCCCCC
Q 009916 179 KRAVPKEF 186 (522)
Q Consensus 179 ~~a~pk~~ 186 (522)
..+.+++.
T Consensus 100 ~~a~~~e~ 107 (123)
T 2dha_A 100 FRSTAAEV 107 (123)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99987653
No 265
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=125.46 Aligned_cols=78 Identities=26% Similarity=0.511 Sum_probs=69.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeecc
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~ 81 (522)
+..++|||+|||+++|+++|+++|++||+|.+| +.++.+++ ||||+|.++++|++|| ++++.|++++|.|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 567899999999999999999999999999986 66665555 9999999999999999 99999999999999887
Q ss_pred CCcc
Q 009916 82 PRDD 85 (522)
Q Consensus 82 ~~~~ 85 (522)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6544
No 266
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=124.95 Aligned_cols=77 Identities=26% Similarity=0.441 Sum_probs=70.7
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|.++++|++|+ ++++.|++++|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 357899999999999999999999999999999999753 9999999999999999 899999999999999
Q ss_pred ccCCccc
Q 009916 80 AVPRDDQ 86 (522)
Q Consensus 80 a~~~~~~ 86 (522)
+.++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876543
No 267
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=129.30 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=74.8
Q ss_pred CCcceeEecCCCCCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCe-
Q 009916 103 GRTKKIFVGGLASTV------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK- 174 (522)
Q Consensus 103 ~~~~~LfVgnLp~~v------teedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr- 174 (522)
...++|||+|||+.+ |+++|+++|++||+|++|.|+ +.+++++|||||+|.++++|++||+.++ ..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346799999999999 789999999999999999988 4678999999999999999999999988 899998
Q ss_pred EEEEEEcCCCCC
Q 009916 175 MVEVKRAVPKEF 186 (522)
Q Consensus 175 ~I~V~~a~pk~~ 186 (522)
+|+|+++.+.++
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999987654
No 268
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.5e-15 Score=128.62 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=69.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|+ ++++||||+|.+.++|++|+ ++++.|++++|.|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 357899999999999999999999999999999998 35789999999999999999 8999999999999998
Q ss_pred cCC
Q 009916 81 VPR 83 (522)
Q Consensus 81 ~~~ 83 (522)
.++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 269
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.7e-15 Score=131.72 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=70.5
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
....+|||+|||+++++++|+++|++|| +|+.+.|+.+ +++|||||+|+++++|++||++++ .+|+|++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999 8999988643 478999999999999999999888 899999999999
Q ss_pred cCCCC
Q 009916 181 AVPKE 185 (522)
Q Consensus 181 a~pk~ 185 (522)
++.+.
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 97543
No 270
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=127.97 Aligned_cols=77 Identities=27% Similarity=0.575 Sum_probs=71.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|+++ |+||||+|.++++|++|+ ++++.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999864 689999999999999999 8999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87654
No 271
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.1e-16 Score=135.08 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=72.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|..+.+..+..++++++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35689999999999999999999999999854433333336889999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 876543
No 272
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=126.33 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=72.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||..+++++|+++|++||.|..+ ..+++++|||||+|.++++|++||+.++ ..|+|++|+|+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 467899999999999999999999999988766 3457889999999999999999999888 8999999999999
Q ss_pred CCCCCC
Q 009916 182 VPKEFS 187 (522)
Q Consensus 182 ~pk~~~ 187 (522)
.++...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 887653
No 273
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=4.2e-16 Score=133.97 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=76.6
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGT---ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~---V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V 178 (522)
....++|||+|||+++|+++|+++|++||. |++|+|++++. ++++|||||+|.++++|++||++..+.|++|.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 356789999999999999999999999998 89999999988 99999999999999999999994448999999999
Q ss_pred EEcCCCC
Q 009916 179 KRAVPKE 185 (522)
Q Consensus 179 ~~a~pk~ 185 (522)
.++.+++
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9998765
No 274
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=2.6e-15 Score=129.55 Aligned_cols=79 Identities=20% Similarity=0.459 Sum_probs=71.3
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
.....++|||+|||.++++++|+++|++||.|++|.|+ +|||||+|.++++|++|++.++ ..|+|++|+|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34577899999999999999999999999999999998 6799999999999999999877 89999999999
Q ss_pred EcCCCCCC
Q 009916 180 RAVPKEFS 187 (522)
Q Consensus 180 ~a~pk~~~ 187 (522)
+++++..+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99987643
No 275
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=121.07 Aligned_cols=75 Identities=29% Similarity=0.521 Sum_probs=69.2
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhc-C-CccCCeEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT-F-HELNGKMVEVK 179 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~-~-~~l~Gr~I~V~ 179 (522)
..+.++|||+|||.++++++|+++|++||+|++|+++++ ++||||+|.++++|++|++.+ + ..|+|++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999999864 689999999999999999987 6 79999999999
Q ss_pred EcC
Q 009916 180 RAV 182 (522)
Q Consensus 180 ~a~ 182 (522)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 276
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=125.00 Aligned_cols=79 Identities=25% Similarity=0.519 Sum_probs=69.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCC-eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC--CccCCeEEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGT-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF--HELNGKMVEVK 179 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~-V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~--~~l~Gr~I~V~ 179 (522)
...++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.++++|++||+.++ .+|+|++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 5555553 47899999999999999999766 68999999999
Q ss_pred EcCCCCCCC
Q 009916 180 RAVPKEFSP 188 (522)
Q Consensus 180 ~a~pk~~~~ 188 (522)
+++++..+.
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 999876543
No 277
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=126.09 Aligned_cols=79 Identities=33% Similarity=0.627 Sum_probs=70.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHhcccccCCeEEEEeeccC
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~n~~~i~Gr~I~V~~a~~ 82 (522)
.+.++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|.++++|++|+...+.+.+++|+|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 56899999999999999999999999999999999864 6899999999999999877556778999999999987
Q ss_pred Cccc
Q 009916 83 RDDQ 86 (522)
Q Consensus 83 ~~~~ 86 (522)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 278
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=126.58 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=70.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++++++|+++|++||+|. ++++.+ ++++||||+|.++++|++|+ ++++.|++++|.|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3478999999999999999999999999997 677654 57899999999999999999 8999999999999999
Q ss_pred cCCc
Q 009916 81 VPRD 84 (522)
Q Consensus 81 ~~~~ 84 (522)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 279
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=130.44 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=70.7
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC---CCcccEEEEEecCHHHHHHHHhcccccCCeEEEEee
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT---GRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~t---g~srG~aFVeF~~~e~A~kAl~n~~~i~Gr~I~V~~ 79 (522)
++.++|||+|||+++||++|+++|++||+|+ ++++.++.+ +++||||||+|.++++|++||..-+.++++.|.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 5789999999999999999999999999999 888888777 799999999999999999999444568999888876
Q ss_pred ccCC
Q 009916 80 AVPR 83 (522)
Q Consensus 80 a~~~ 83 (522)
+.+.
T Consensus 85 ~~~~ 88 (114)
T 2dnl_A 85 SPTI 88 (114)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 6544
No 280
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.9e-15 Score=131.69 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=66.9
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeE-----E
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM-----V 176 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~-----I 176 (522)
...++|||+|||+++++++|+++|++||+|++|.|+.+ |||||+|+++++|++||++|+ .+|+|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999866 799999999999999999888 8999998 8
Q ss_pred EEEEcCCCCCCC
Q 009916 177 EVKRAVPKEFSP 188 (522)
Q Consensus 177 ~V~~a~pk~~~~ 188 (522)
+|+.+.++...+
T Consensus 87 ~v~~~~~~~~~~ 98 (115)
T 3beg_B 87 RVKVDGPRSPSY 98 (115)
T ss_dssp EEEECC----CC
T ss_pred EeccCCCCCCCC
Confidence 888887765544
No 281
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=122.12 Aligned_cols=74 Identities=23% Similarity=0.481 Sum_probs=68.4
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--h-cccccCCeEEEEe
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M-DKHMIDGRTVEAK 78 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~-n~~~i~Gr~I~V~ 78 (522)
+.+.++|||+|||+++++++|+++|++||+|.+|+|+++ |+||||+|.++++|++|+ + +++.|++++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356789999999999999999999999999999999874 689999999999999999 5 8899999999999
Q ss_pred ecc
Q 009916 79 KAV 81 (522)
Q Consensus 79 ~a~ 81 (522)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 282
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=123.64 Aligned_cols=76 Identities=22% Similarity=0.479 Sum_probs=70.0
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|.++++|++|+ ++++.|++++|.|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999999853 9999999999999999 899999999999999
Q ss_pred ccCCcc
Q 009916 80 AVPRDD 85 (522)
Q Consensus 80 a~~~~~ 85 (522)
+.++..
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 283
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=132.25 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=72.8
Q ss_pred CCcceeEecCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~----~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (522)
.+.++|||+|||+.+++++|+ ++|++||+|++|.+.+ ++++||||||+|.++++|++||+.++ ..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 6999999999988753 57889999999999999999999988 899999999
Q ss_pred EEEcCCCCC
Q 009916 178 VKRAVPKEF 186 (522)
Q Consensus 178 V~~a~pk~~ 186 (522)
|++++++..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987654
No 284
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=124.56 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=73.3
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDV-VVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v-~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
.....++|||+|||+++++++|+++|++||+|++| .|+.++.++ .|||+|.++++|++||+.++ ..|+|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34467899999999999999999999999999999 588877654 39999999999999999887 8999999999
Q ss_pred EEcCCCCC
Q 009916 179 KRAVPKEF 186 (522)
Q Consensus 179 ~~a~pk~~ 186 (522)
+++.+++.
T Consensus 87 ~~a~~~~~ 94 (96)
T 2e44_A 87 AYIPDEMA 94 (96)
T ss_dssp EECCCCCS
T ss_pred EEcCcccc
Confidence 99998853
No 285
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=3e-15 Score=124.23 Aligned_cols=72 Identities=10% Similarity=0.199 Sum_probs=68.0
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
+.-|+|+||++.+||++|+++|.+||+|++++++. +||||||+|.++++|++|++.|+ .+|.+|+|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56799999999999999999999999999999975 58999999999999999999999 89999999999985
No 286
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=1.9e-15 Score=131.35 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=69.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
...++|||+|||+++++++|+++|++|| +|+.++|+.+ +++|||||+|.++++|++|| +++.+|++++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999 8999988643 47899999999999999999 899999999999998
Q ss_pred ccCC
Q 009916 80 AVPR 83 (522)
Q Consensus 80 a~~~ 83 (522)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8643
No 287
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=131.79 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=70.2
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+++.++|||+|||+++++++|+++|++||+|++|.|++ +++||||+|.++++|++|| +++..|++++|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999998874 5689999999999999999 899999999999999
Q ss_pred ccCCc
Q 009916 80 AVPRD 84 (522)
Q Consensus 80 a~~~~ 84 (522)
+....
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 86543
No 288
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=131.23 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCCcEEEECCCCCC-CCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hc--ccccCCeEEEE
Q 009916 3 SDLGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEA 77 (522)
Q Consensus 3 ~d~r~LfVgnLP~~-~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n--~~~i~Gr~I~V 77 (522)
..+++|||+|||++ +||++|+++|++||+|++|+|++ +|+||||+|.++++|++|+ ++ ...|++|+|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 46789999999998 99999999999999999999975 4689999999999999999 44 46799999999
Q ss_pred eeccCCccc
Q 009916 78 KKAVPRDDQ 86 (522)
Q Consensus 78 ~~a~~~~~~ 86 (522)
.++.++...
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999766543
No 289
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.9e-15 Score=126.78 Aligned_cols=76 Identities=22% Similarity=0.403 Sum_probs=70.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||.++++++|+++|++||.|++|+|+ +++|||||+|.+.++|++|++.++ ..|+|++|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 456899999999999999999999999999999998 357899999999999999999887 8999999999999
Q ss_pred CCC
Q 009916 182 VPK 184 (522)
Q Consensus 182 ~pk 184 (522)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 290
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=129.80 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=71.4
Q ss_pred CCCcceeEecCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC---CccCCeEEE
Q 009916 102 PGRTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVE 177 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~-vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~---~~l~Gr~I~ 177 (522)
..+.++|||+|||++ ++++||+++|++||.|++|.|++ .||||||+|+++++|++|++.++ .+|.||+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346789999999998 99999999999999999999974 37899999999999999999764 469999999
Q ss_pred EEEcCCCCCC
Q 009916 178 VKRAVPKEFS 187 (522)
Q Consensus 178 V~~a~pk~~~ 187 (522)
|.+++++...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876654
No 291
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=126.82 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=70.5
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+++.++|||+|||+++++++|+++|++||+|..+ ..+++++|||||+|.++++|++|+ ++++.|++++|.|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999999999887655 336889999999999999999999 899999999999999
Q ss_pred ccCCcc
Q 009916 80 AVPRDD 85 (522)
Q Consensus 80 a~~~~~ 85 (522)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 977643
No 292
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=5e-15 Score=127.70 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=70.2
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+ +|||||+|.+.++|++|+ +++..|++++|.|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3578999999999999999999999999999999998 689999999999999999 899999999999999
Q ss_pred ccCCcc
Q 009916 80 AVPRDD 85 (522)
Q Consensus 80 a~~~~~ 85 (522)
+.++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987543
No 293
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=6.1e-15 Score=141.63 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=77.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++||+.++ ..+.++.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999988 8999999999998
Q ss_pred CCCC
Q 009916 182 VPKE 185 (522)
Q Consensus 182 ~pk~ 185 (522)
.+..
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 294
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.5e-15 Score=126.31 Aligned_cols=77 Identities=21% Similarity=0.427 Sum_probs=69.9
Q ss_pred CCcceeEecCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 103 GRTKKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 103 ~~~~~LfVgnLp~-~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
.+.++|||+|||+ ++++++|+++|++||+|++|.|. +|||||+|.++++|++||+.++ ..|.|++|+|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5688999999998 99999999999999999999984 6799999999999999999877 899999999999
Q ss_pred cCCCCCC
Q 009916 181 AVPKEFS 187 (522)
Q Consensus 181 a~pk~~~ 187 (522)
++++...
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876543
No 295
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=125.29 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEE-EEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEA-VIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v-~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
..++|||+|||+++++++|+++|++||+|++| .|++++.+++ |||+|.++++|++|+ ++++.|++++|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47899999999999999999999999999999 5888766543 999999999999999 9999999999999999
Q ss_pred cCCc
Q 009916 81 VPRD 84 (522)
Q Consensus 81 ~~~~ 84 (522)
.+++
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8874
No 296
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=123.02 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=68.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhcc--CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRY--GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~--G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~ 78 (522)
.+.++|||+|||+++|+++|+++|++| |+|++|+++ ++||||+|.++++|++|| ++++.|++++|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 467899999999999999999999999 999988875 469999999999999999 89999999999999
Q ss_pred eccCCcc
Q 009916 79 KAVPRDD 85 (522)
Q Consensus 79 ~a~~~~~ 85 (522)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 297
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=2.4e-15 Score=126.14 Aligned_cols=80 Identities=21% Similarity=0.436 Sum_probs=73.8
Q ss_pred CCCcEEEECCCCCCCCHHHHH----HHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLK----EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~----e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~ 76 (522)
...++|||+|||+++++++|+ ++|++||+|.+|+|++ ++++++||||+|.++++|++|+ +++..|++++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 568999999999999999999 9999999999999874 4678999999999999999999 899999999999
Q ss_pred EeeccCCcc
Q 009916 77 AKKAVPRDD 85 (522)
Q Consensus 77 V~~a~~~~~ 85 (522)
|+++.++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999987654
No 298
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=132.90 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=73.1
Q ss_pred CCCcEEEECCCCCCCCHHHHH----HHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLK----EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~----e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~ 76 (522)
...++|||+|||+++++++|+ ++|++||+|++|.|++ ++++||||||+|.+.++|++|+ +++..|.+++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 357899999999999999876 6999999999988864 5789999999999999999999 899999999999
Q ss_pred EeeccCCcccc
Q 009916 77 AKKAVPRDDQN 87 (522)
Q Consensus 77 V~~a~~~~~~~ 87 (522)
|+++.++....
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99998765443
No 299
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=125.22 Aligned_cols=77 Identities=25% Similarity=0.454 Sum_probs=68.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCC-eEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcc-cccCCeEEEEe
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGE-VVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDK-HMIDGRTVEAK 78 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~-V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~-~~i~Gr~I~V~ 78 (522)
.+.++|||+|||+++||++|+++|++||+ |..+.++ +++||||+|.++++|++|+ +++ +.|++++|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 56789999999999999999999999999 6555553 4689999999999999999 888 99999999999
Q ss_pred eccCCccc
Q 009916 79 KAVPRDDQ 86 (522)
Q Consensus 79 ~a~~~~~~ 86 (522)
++.++...
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876543
No 300
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=7.3e-15 Score=137.64 Aligned_cols=86 Identities=47% Similarity=0.819 Sum_probs=78.2
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
+...++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+.+++.|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 35678999999999999999999999999999999999999999999999999999999999999779999999999999
Q ss_pred CCCCCC
Q 009916 182 VPKEFS 187 (522)
Q Consensus 182 ~pk~~~ 187 (522)
.++...
T Consensus 90 ~~~~~~ 95 (196)
T 1l3k_A 90 VSREDS 95 (196)
T ss_dssp CC----
T ss_pred cCcccc
Confidence 876543
No 301
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=2.8e-15 Score=124.76 Aligned_cols=79 Identities=24% Similarity=0.454 Sum_probs=64.1
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
..+..+|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|+++++|+++. .....+.+++|.|+++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEc
Confidence 356789999999999999999999999999999999874 7899999999999998533 2234678999999999
Q ss_pred CCCCC
Q 009916 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
.|+..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 98765
No 302
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=3.9e-15 Score=139.78 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeecc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~ 81 (522)
..++|||+|||+++++++|+++|++||+|++|.|++++ +++++|||||+|.++++|++|| +++..|++++|.|+++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46899999999999999999999999999999999998 8999999999999999999999 89999999999999987
Q ss_pred CCcc
Q 009916 82 PRDD 85 (522)
Q Consensus 82 ~~~~ 85 (522)
+...
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6543
No 303
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.2e-14 Score=120.69 Aligned_cols=78 Identities=23% Similarity=0.429 Sum_probs=70.3
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|| ++|+++|+++|++||+|++|.|. +++|||||+|+++++|++||+.++ ..|++++|+|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 89999999999999999999984 457899999999999999999888 899999999999
Q ss_pred cCCCCCC
Q 009916 181 AVPKEFS 187 (522)
Q Consensus 181 a~pk~~~ 187 (522)
++++...
T Consensus 84 a~~~~~~ 90 (97)
T 1x5p_A 84 ARKQPML 90 (97)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 304
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=1.1e-14 Score=123.07 Aligned_cols=76 Identities=21% Similarity=0.453 Sum_probs=69.9
Q ss_pred CCCcceeEecCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 102 PGRTKKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 102 ~~~~~~LfVgnLp~-~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
..+.++|||+|||. ++++++|+++|++||.|++|+|. +|||||+|+++++|++|++.++ ..|+|++|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35678999999998 99999999999999999999983 7899999999999999999887 89999999999
Q ss_pred EcCCCC
Q 009916 180 RAVPKE 185 (522)
Q Consensus 180 ~a~pk~ 185 (522)
+++++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998754
No 305
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=9.6e-15 Score=137.14 Aligned_cols=85 Identities=20% Similarity=0.386 Sum_probs=78.8
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
.....++|||.|||+.+++++|+++|++||+|++|.|+.++ +++++|||||+|.++++|++||+.++ ..|+|++|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999888 89999999999
Q ss_pred EcCCCCC
Q 009916 180 RAVPKEF 186 (522)
Q Consensus 180 ~a~pk~~ 186 (522)
++.+...
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9987654
No 306
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=4.4e-15 Score=122.78 Aligned_cols=74 Identities=12% Similarity=0.265 Sum_probs=68.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
+..++|||+|||++++|++|+++|++| +|++|+|. ++||||||+|.++++|++|+ +++.++++++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 567899999999999999999999999 99999884 57899999999999999999 9999999999999998
Q ss_pred cCC
Q 009916 81 VPR 83 (522)
Q Consensus 81 ~~~ 83 (522)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 307
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-15 Score=124.24 Aligned_cols=80 Identities=25% Similarity=0.488 Sum_probs=69.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (522)
.+.++|||+|||+++++++|+++|++||+|++|+|+++ +||||||+|+++++|++|+.. ...+.+++|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 35689999999999999999999999999999999864 689999999999999876443 357799999999999
Q ss_pred CCCCCC
Q 009916 183 PKEFSP 188 (522)
Q Consensus 183 pk~~~~ 188 (522)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 308
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=3.2e-15 Score=125.33 Aligned_cols=82 Identities=18% Similarity=0.375 Sum_probs=74.0
Q ss_pred CCCcceeEecCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMV 176 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~----~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I 176 (522)
..+.++|||+|||.++++++|+ ++|++||.|++|.|++ +++++|||||+|.++++|++|++.++ ..|.|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3567899999999999999999 9999999999999874 46778999999999999999999877 89999999
Q ss_pred EEEEcCCCCC
Q 009916 177 EVKRAVPKEF 186 (522)
Q Consensus 177 ~V~~a~pk~~ 186 (522)
+|++++++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999998754
No 309
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.2e-14 Score=131.88 Aligned_cols=80 Identities=29% Similarity=0.549 Sum_probs=76.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++|+++|+++|++||+|.+++|++++.+++++|+|||+|.++++|++|+ +++..|++++|.|+++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45789999999999999999999999999999999999989999999999999999999999 8999999999999998
Q ss_pred cC
Q 009916 81 VP 82 (522)
Q Consensus 81 ~~ 82 (522)
.+
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 310
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.56 E-value=3.7e-15 Score=136.12 Aligned_cols=81 Identities=37% Similarity=0.734 Sum_probs=76.8
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeeccC
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~~ 82 (522)
..++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++|+ ++.+.|++++|+|+++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 3579999999999999999999999999999999999889999999999999999999999 889999999999999987
Q ss_pred Cc
Q 009916 83 RD 84 (522)
Q Consensus 83 ~~ 84 (522)
++
T Consensus 166 k~ 167 (167)
T 2cjk_A 166 RH 167 (167)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 311
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=1.4e-14 Score=137.89 Aligned_cols=83 Identities=20% Similarity=0.532 Sum_probs=78.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|+ +++..|++++|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 312
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.9e-15 Score=124.05 Aligned_cols=76 Identities=25% Similarity=0.478 Sum_probs=69.0
Q ss_pred CCCcEEEECCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
.+.++|||+|||+ ++++++|+++|++||+|++|+|. ++||||+|.++++|++|+ +++..+.+++|.|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5789999999998 99999999999999999999984 689999999999999999 899999999999999
Q ss_pred ccCCccc
Q 009916 80 AVPRDDQ 86 (522)
Q Consensus 80 a~~~~~~ 86 (522)
+.++...
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9776543
No 313
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=8.3e-15 Score=126.11 Aligned_cols=73 Identities=21% Similarity=0.463 Sum_probs=67.7
Q ss_pred CCcEEEECCCCCC-CCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 4 DLGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 4 d~r~LfVgnLP~~-~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
..++|||+|||++ +++++|+++|++||+|++|+| +++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3489999999999 999999999999999999998 4689999999999999999 8999999999999999
Q ss_pred cCCc
Q 009916 81 VPRD 84 (522)
Q Consensus 81 ~~~~ 84 (522)
.+..
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 314
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=1.5e-14 Score=122.19 Aligned_cols=73 Identities=26% Similarity=0.488 Sum_probs=68.3
Q ss_pred CCCcEEEECCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEee
Q 009916 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~ 79 (522)
.+.++|||+|||+ ++++++|+++|++||+|.+|+|. +|||||+|.+.++|++|+ +++..+++++|.|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5789999999998 99999999999999999999983 689999999999999999 899999999999999
Q ss_pred ccCC
Q 009916 80 AVPR 83 (522)
Q Consensus 80 a~~~ 83 (522)
+.++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 315
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=3.8e-15 Score=121.16 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=65.9
Q ss_pred ceeEecCCCCCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCe-EEE
Q 009916 106 KKIFVGGLASTV------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK-MVE 177 (522)
Q Consensus 106 ~~LfVgnLp~~v------teedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr-~I~ 177 (522)
++|||+|||..+ ++++|+++|++||+|++|.|+ +.+++++|||||+|.++++|++|++.++ ..|+|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 4678999999999999999999999888 899999 887
Q ss_pred E
Q 009916 178 V 178 (522)
Q Consensus 178 V 178 (522)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 316
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.5e-15 Score=128.36 Aligned_cols=81 Identities=23% Similarity=0.494 Sum_probs=71.9
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT---QRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~t---g~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~ 179 (522)
...++|||+|||+++|+++|+++|++||+|+ +.++.++.+ +++||||||+|+++++|++||+.+ +.|+|+.|.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 4578999999999999999999999999999 888888877 699999999999999999999988 46888888887
Q ss_pred EcCCCC
Q 009916 180 RAVPKE 185 (522)
Q Consensus 180 ~a~pk~ 185 (522)
.+.+..
T Consensus 84 ~~~~~~ 89 (114)
T 2dnl_A 84 SSPTIK 89 (114)
T ss_dssp CCSSSC
T ss_pred cCCCcC
Confidence 665443
No 317
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=9.6e-15 Score=126.49 Aligned_cols=81 Identities=12% Similarity=0.270 Sum_probs=74.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||..+++++|+++|++||.|++|.|+++. +++|||||+|.++++|++|++.++ ..|+|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 467899999999999999999999999999999999764 458999999999999999999877 8999999999999
Q ss_pred CCCCC
Q 009916 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 87654
No 318
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.54 E-value=2.1e-14 Score=130.49 Aligned_cols=82 Identities=22% Similarity=0.435 Sum_probs=77.6
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 009916 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~p 183 (522)
.++|||+|||.++++++|+++|++||+|.+|.+++++.+++++|||||+|.++++|++|++.++ ..|.+++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999999899999999999999999999999877 899999999999987
Q ss_pred CCC
Q 009916 184 KEF 186 (522)
Q Consensus 184 k~~ 186 (522)
+..
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 319
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=7e-15 Score=128.07 Aligned_cols=74 Identities=22% Similarity=0.341 Sum_probs=64.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeE-----E
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRT-----V 75 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~-----I 75 (522)
...++|||+|||+++||++|+++|++||+|++|+|+++ +||||+|.++++|++|| +++++|++++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999875 79999999999999999 8999999998 6
Q ss_pred EEeeccCC
Q 009916 76 EAKKAVPR 83 (522)
Q Consensus 76 ~V~~a~~~ 83 (522)
+|+.+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66655543
No 320
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.54 E-value=9.9e-15 Score=132.58 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=71.7
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|++|+|+++ ++|||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45689999999999999999999999999999999886 5799999999999999999 8999999999999999
Q ss_pred cCCc
Q 009916 81 VPRD 84 (522)
Q Consensus 81 ~~~~ 84 (522)
.++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
No 321
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.54 E-value=1.8e-14 Score=131.38 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=78.7
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
+.++|||+|||.++++++|+++|++||+|++|++++++.+++++|||||+|.++++|++|++.++ ..|.+++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999777 89999999999998
Q ss_pred CCCCC
Q 009916 183 PKEFS 187 (522)
Q Consensus 183 pk~~~ 187 (522)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 77643
No 322
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.3e-14 Score=118.89 Aligned_cols=72 Identities=21% Similarity=0.529 Sum_probs=66.7
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhcc----C-------CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccc
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRY----G-------EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHM 69 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~----G-------~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~ 69 (522)
+++.++|||+|||+++++++|+++|++| | +|.+++++++ |+||||+|.++++|++|+ ++++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 3578999999999999999999999999 8 9999998764 689999999999999999 99999
Q ss_pred cCCeEEEEee
Q 009916 70 IDGRTVEAKK 79 (522)
Q Consensus 70 i~Gr~I~V~~ 79 (522)
|++++|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 323
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=2e-14 Score=134.93 Aligned_cols=83 Identities=23% Similarity=0.498 Sum_probs=78.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ +++..|++++|.|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45699999999999999999999999999999999999989999999999999999999999 8999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 324
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2e-14 Score=136.73 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=75.1
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~p 183 (522)
..++|||+|||+++|+++|+++|++||+|+.|+|++++. ++++|||||+|+++++|++||+.++.+|+|++|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 457999999999999999999999999999999999875 8899999999999999999999888999999999999876
Q ss_pred CC
Q 009916 184 KE 185 (522)
Q Consensus 184 k~ 185 (522)
-.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 325
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=3.6e-14 Score=131.31 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=72.4
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCC--eEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG--KMVEV 178 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~G--r~I~V 178 (522)
+....+|||+||++.+|+++|+++|++||+|++|+|+.+ ++++||||+|+++++|++|++.|+ .+|.+ ++|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 345678999999999999999999999999999999754 257899999999999999999999 88865 99999
Q ss_pred EEcCCCCC
Q 009916 179 KRAVPKEF 186 (522)
Q Consensus 179 ~~a~pk~~ 186 (522)
++++++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99998754
No 326
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.7e-14 Score=118.59 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=68.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|| ++|+++|+++|++||+|++|+|. ++++||||+|.++++|++|| ++++.|++++|.|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 99999999999999999999984 46789999999999999999 8999999999999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 327
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=2.3e-14 Score=131.36 Aligned_cols=78 Identities=24% Similarity=0.537 Sum_probs=74.5
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeecc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~ 81 (522)
+.++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++|+ ++++.|++++|.|++|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 3589999999999999999999999999999999999889999999999999999999999 89999999999999873
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=2e-14 Score=118.81 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=68.9
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
..++|||+|||+++++++|+++|++| .|++|+|. +++|||||+|.++++|++|++.++ .+|+|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999884 578999999999999999999888 89999999999987
Q ss_pred CCC
Q 009916 183 PKE 185 (522)
Q Consensus 183 pk~ 185 (522)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 544
No 329
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=5.3e-14 Score=130.15 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=69.4
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCC--eEEEEeec
Q 009916 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG--RTVEAKKA 80 (522)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~G--r~I~V~~a 80 (522)
..+|||+|||+++||++|+++|++||+|++|+|+.+ ++++||||+|.+.++|++|+ +++.+|.+ ++|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 457899999999999999999999999999999754 25789999999999999999 99999966 99999999
Q ss_pred cCCcc
Q 009916 81 VPRDD 85 (522)
Q Consensus 81 ~~~~~ 85 (522)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 88753
No 330
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=4.8e-15 Score=133.60 Aligned_cols=83 Identities=18% Similarity=0.331 Sum_probs=71.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEE--E---eecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAV--I---MRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~--i---~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I 75 (522)
...++|||+|||+++|+++|+++|++||+|..|. + ++...+++++|||||+|.++++|++|| +++..|++++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4678999999999999999999999999987741 1 111236889999999999999999999 89999999999
Q ss_pred EEeeccCCcc
Q 009916 76 EAKKAVPRDD 85 (522)
Q Consensus 76 ~V~~a~~~~~ 85 (522)
.|+++.+...
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 331
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.6e-14 Score=123.77 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=70.1
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
..++|||+|||+.+++++|+++|++||.|++|.|++ .++||||+|.++++|++||+.++ ..|.+++|.|+++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998874 46799999999999999999888 89999999999998
Q ss_pred CCCC
Q 009916 183 PKEF 186 (522)
Q Consensus 183 pk~~ 186 (522)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6544
No 332
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=131.46 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=72.6
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEE--E---EecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVV--V---MYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM 175 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~--i---~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~ 175 (522)
..+.++|||+|||+++|+++|+++|++||.|+.+. + ++...+++++|||||+|.+.++|++||+.++ ..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34678999999999999999999999999987741 1 1112468899999999999999999999887 8999999
Q ss_pred EEEEEcCCCCCC
Q 009916 176 VEVKRAVPKEFS 187 (522)
Q Consensus 176 I~V~~a~pk~~~ 187 (522)
|.|++++++..+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 333
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.50 E-value=3.5e-14 Score=151.26 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.5
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeecc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~ 81 (522)
..++|||+|||++||+++|+++|++||+|+.|+|+.++.+++++|||||+|.++++|++|| ++++.|++++|.|+++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 4589999999999999999999999999999999999989999999999999999999999 89999999999999998
Q ss_pred CCcc
Q 009916 82 PRDD 85 (522)
Q Consensus 82 ~~~~ 85 (522)
++..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7543
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=123.54 Aligned_cols=79 Identities=16% Similarity=0.305 Sum_probs=69.8
Q ss_pred CCcceeEe--cCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc-----CCe
Q 009916 103 GRTKKIFV--GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL-----NGK 174 (522)
Q Consensus 103 ~~~~~LfV--gnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l-----~Gr 174 (522)
.++++||| +||+++++|++|+++|++||+|++|.|+.+ ||||||+|+++++|++|++.|+ ++| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 46789999 779999999999999999999999988642 7899999999999999999988 777 789
Q ss_pred EEEEEEcCCCCCC
Q 009916 175 MVEVKRAVPKEFS 187 (522)
Q Consensus 175 ~I~V~~a~pk~~~ 187 (522)
+|.|.+++..+..
T Consensus 97 ~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 97 TLYLNFVEKVQWS 109 (114)
T ss_dssp ECEEEEESCCCCS
T ss_pred EEEEEecccCccc
Confidence 9999999865543
No 335
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.9e-14 Score=126.11 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=68.3
Q ss_pred cEEEECCC----CCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecC----HHH----HHHHH----hcccc
Q 009916 6 GKLFIGGI----SWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD----PAV----AERVI----MDKHM 69 (522)
Q Consensus 6 r~LfVgnL----P~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~----~e~----A~kAl----~n~~~ 69 (522)
++|||+|| |++++|++|+++|++||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|+ ++...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 78887 48899
Q ss_pred cCCeEEEEeecc
Q 009916 70 IDGRTVEAKKAV 81 (522)
Q Consensus 70 i~Gr~I~V~~a~ 81 (522)
|+|++|+|+.-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998653
No 336
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=5.3e-14 Score=123.91 Aligned_cols=77 Identities=23% Similarity=0.443 Sum_probs=69.8
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+.++|||+|| ++|+++|+++|++||+|++|.|+ +++|||||+|+++++|++||+.++ .+|++++|+|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 69999999999999999999996 467899999999999999998887 899999999999
Q ss_pred cCCCCC
Q 009916 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
++++..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 998754
No 337
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5e-14 Score=124.63 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=69.3
Q ss_pred ceeEecCC----CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC----HHH----HHHHHH--hcC-Cc
Q 009916 106 KKIFVGGL----ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS----EEA----VDRVLH--KTF-HE 170 (522)
Q Consensus 106 ~~LfVgnL----p~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s----~e~----A~~Al~--~~~-~~ 170 (522)
++|||+|| |+.++|++|+++|++||+|.+|.++.|++|++++|||||+|.+ +++ |.+|++ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 556 79
Q ss_pred cCCeEEEEEEcC
Q 009916 171 LNGKMVEVKRAV 182 (522)
Q Consensus 171 l~Gr~I~V~~a~ 182 (522)
|+|++|+|.+.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 338
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=1.1e-13 Score=123.56 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=71.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceE-EEEEecCHHHHHHHHHhcC-CccCC--eEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF-GFITYDSEEAVDRVLHKTF-HELNG--KMVEV 178 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~-aFVeF~s~e~A~~Al~~~~-~~l~G--r~I~V 178 (522)
.+..+|||+||++.+|+++|+++|++||+|++|+|+.+ .++| |||+|+++++|++|++.|+ .+|.+ ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 45678899999999999999999999999999988864 2677 9999999999999999999 89988 99999
Q ss_pred EEcCCCCC
Q 009916 179 KRAVPKEF 186 (522)
Q Consensus 179 ~~a~pk~~ 186 (522)
++++++..
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99998754
No 339
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.8e-14 Score=123.02 Aligned_cols=76 Identities=12% Similarity=0.202 Sum_probs=66.6
Q ss_pred CCCcEEEE--CCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hccccc-----CCe
Q 009916 3 SDLGKLFI--GGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI-----DGR 73 (522)
Q Consensus 3 ~d~r~LfV--gnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i-----~Gr 73 (522)
...++||| +|||+++||++|+++|++||+|++|+|++ .|+||||+|.++++|++|+ +|+++| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45789999 77999999999999999999999988864 3689999999999999999 899888 688
Q ss_pred EEEEeeccCCc
Q 009916 74 TVEAKKAVPRD 84 (522)
Q Consensus 74 ~I~V~~a~~~~ 84 (522)
+|.|.++....
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 88888876543
No 340
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.48 E-value=9e-14 Score=132.21 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEEEeeccC
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~V~~a~~ 82 (522)
+.++|||+|||+++|+++|+++|++||+|.+|+|++++. ++++|||||+|.++++|++|| +.++.|+|++|.|+++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 358999999999999999999999999999999999874 899999999999999999999 556799999999998765
Q ss_pred Cc
Q 009916 83 RD 84 (522)
Q Consensus 83 ~~ 84 (522)
..
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.5e-13 Score=122.59 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=68.4
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccE-EEEEecCHHHHHHHH--hcccccCC--eEEEEeec
Q 009916 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGF-GFVVFADPAVAERVI--MDKHMIDG--RTVEAKKA 80 (522)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~-aFVeF~~~e~A~kAl--~n~~~i~G--r~I~V~~a 80 (522)
-+|||+|||+.+||++|+++|++||+|.+|+|+++ .+++ |||+|.++++|++|+ +++..|.+ ++|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46789999999999999999999999999998864 2578 999999999999999 99999998 99999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
+++...
T Consensus 104 k~~~l~ 109 (130)
T 3zzy_A 104 KLTSLN 109 (130)
T ss_dssp SCSSCC
T ss_pred CCCcee
Confidence 876543
No 342
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=2.2e-13 Score=120.65 Aligned_cols=78 Identities=9% Similarity=0.204 Sum_probs=69.0
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceE-EEEEecCHHHHHHHHHhcC-CccCC--eEEEE
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF-GFITYDSEEAVDRVLHKTF-HELNG--KMVEV 178 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~-aFVeF~s~e~A~~Al~~~~-~~l~G--r~I~V 178 (522)
.....|||+||++.+|+++|+++|++||.|++|+|+.. +|| |||+|+++++|++|++.|+ .+|.+ ++|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 44556789999999999999999999999999999752 276 9999999999999999988 88987 69999
Q ss_pred EEcCCCCC
Q 009916 179 KRAVPKEF 186 (522)
Q Consensus 179 ~~a~pk~~ 186 (522)
++|+++..
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99998764
No 343
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=1.2e-13 Score=113.08 Aligned_cols=71 Identities=20% Similarity=0.511 Sum_probs=64.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Cc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQF----G-------TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HE 170 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~f----G-------~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~ 170 (522)
.+.++|||+|||+++++++|+++|++| | +|.++.++++ +|||||+|.++++|++|+ .++ ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999998754 789999999999999999 777 89
Q ss_pred cCCeEEEEEE
Q 009916 171 LNGKMVEVKR 180 (522)
Q Consensus 171 l~Gr~I~V~~ 180 (522)
|+|++|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 344
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.46 E-value=1.9e-13 Score=117.51 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=72.8
Q ss_pred CCCCcEEEECCCCC-----CCCHHHHHHHHhccCCeEEEEEeecCCC-CCcccEEEEEecCHHHHHHHH--hcccccCCe
Q 009916 2 ESDLGKLFIGGISW-----DTDEERLKEYFSRYGEVVEAVIMRDRAT-GRARGFGFVVFADPAVAERVI--MDKHMIDGR 73 (522)
Q Consensus 2 e~d~r~LfVgnLP~-----~~teeeL~e~F~~~G~V~~v~i~~d~~t-g~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr 73 (522)
...+++|+|+||.. +.++++|+++|++||+|++|+|++++.+ ++++|||||+|.++++|++|+ +|++.+++|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45789999999973 2478999999999999999999998754 689999999999999999999 999999999
Q ss_pred EEEEeeccCC
Q 009916 74 TVEAKKAVPR 83 (522)
Q Consensus 74 ~I~V~~a~~~ 83 (522)
+|.|.++.+.
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998653
No 345
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=3.7e-13 Score=119.16 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=65.8
Q ss_pred EEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccE-EEEEecCHHHHHHHH--hcccccCC--eEEEEeecc
Q 009916 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGF-GFVVFADPAVAERVI--MDKHMIDG--RTVEAKKAV 81 (522)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~-aFVeF~~~e~A~kAl--~n~~~i~G--r~I~V~~a~ 81 (522)
.|||+|||+.+|+++|+++|++||+|++|+|++. +|| |||+|.+.++|++|+ +++.+|.+ ++|+|++++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999999752 276 999999999999999 99999987 699999998
Q ss_pred CCcc
Q 009916 82 PRDD 85 (522)
Q Consensus 82 ~~~~ 85 (522)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7753
No 346
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=2.1e-13 Score=125.03 Aligned_cols=83 Identities=22% Similarity=0.422 Sum_probs=74.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC--CcceEEEEEecCHHHHHHHHHhcC-CccC---CeEEE
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQ--RPRGFGFITYDSEEAVDRVLHKTF-HELN---GKMVE 177 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg--~~rG~aFVeF~s~e~A~~Al~~~~-~~l~---Gr~I~ 177 (522)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.++ +++|||||+|.++++|++|++.++ ..+. .+.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999999887 899999999999999999999887 5554 68888
Q ss_pred EEEcCCCCC
Q 009916 178 VKRAVPKEF 186 (522)
Q Consensus 178 V~~a~pk~~ 186 (522)
|.++.++..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888876654
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=3.5e-13 Score=115.80 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCcceeEecCCCC-----CCCHHHHHHHHhhcCCeeEEEEEecCCC-CCcceEEEEEecCHHHHHHHHHhcC-CccCCeE
Q 009916 103 GRTKKIFVGGLAS-----TVTESDFKKYFDQFGTITDVVVMYDHNT-QRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM 175 (522)
Q Consensus 103 ~~~~~LfVgnLp~-----~vteedL~~~F~~fG~V~~v~i~~d~~t-g~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~ 175 (522)
.++++|+|.||.. +.++++|+++|++||+|++|.|++++.+ ++++||+||+|.++++|++|++.|+ ..|+||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2378999999999999999999998764 6889999999999999999999988 8999999
Q ss_pred EEEEEcCCC
Q 009916 176 VEVKRAVPK 184 (522)
Q Consensus 176 I~V~~a~pk 184 (522)
|.|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999763
No 348
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=114.44 Aligned_cols=74 Identities=11% Similarity=0.214 Sum_probs=65.4
Q ss_pred Ccce-eEecCCCCCCCHHH----HHHHHhhc-CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEE
Q 009916 104 RTKK-IFVGGLASTVTESD----FKKYFDQF-GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMV 176 (522)
Q Consensus 104 ~~~~-LfVgnLp~~vteed----L~~~F~~f-G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I 176 (522)
++.+ |||.|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|+ .+|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4555 99999999999988 55899999 599888 22 899999999999999999888 89999999
Q ss_pred EEEEcCCCCCC
Q 009916 177 EVKRAVPKEFS 187 (522)
Q Consensus 177 ~V~~a~pk~~~ 187 (522)
+|++|+++.+.
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999987754
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=2.3e-13 Score=119.81 Aligned_cols=76 Identities=16% Similarity=0.316 Sum_probs=68.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|| ++|+++|+++|++||+|++|+|+ ++++||||+|.+.++|++|| +++..|++++|.|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999995 79999999999999999999986 46789999999999999999 8999999999999999
Q ss_pred cCCccc
Q 009916 81 VPRDDQ 86 (522)
Q Consensus 81 ~~~~~~ 86 (522)
.++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 876543
No 350
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=2.8e-13 Score=124.76 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=69.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeec
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++|+++|+++|++||+|..+ ..+++++|||||+|.++++|++|+ ++++.|++++|.|+++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356899999999999999999999999987654 456899999999999999999999 8999999999999999
Q ss_pred cCC
Q 009916 81 VPR 83 (522)
Q Consensus 81 ~~~ 83 (522)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 351
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.42 E-value=3.9e-13 Score=128.89 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=71.3
Q ss_pred CcceeEecCCC-CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009916 104 RTKKIFVGGLA-STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 104 ~~~~LfVgnLp-~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
+.++|||+||| +.+|+++|+++|++||.|.+|+|+++ .||||||+|.++++|++||+.|+ .+|.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56799999999 89999999999999999999999865 37899999999999999999888 8999999999999
Q ss_pred CCCCC
Q 009916 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
+.+..
T Consensus 78 ~~~~~ 82 (205)
T 3tyt_A 78 KQPAI 82 (205)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 76543
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.3e-12 Score=112.93 Aligned_cols=84 Identities=12% Similarity=0.275 Sum_probs=71.2
Q ss_pred CCCCcceeEecCCCCCCC-----------HHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-
Q 009916 101 GPGRTKKIFVGGLASTVT-----------ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF- 168 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vt-----------eedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~- 168 (522)
.+.++++|+|.||..... +++|+++|++||+|++|.| .++ .++|||||+|.++++|++|++.++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345788999999944332 6899999999999999966 554 379999999999999999999988
Q ss_pred CccCCeEEEEEEcCCCCCCC
Q 009916 169 HELNGKMVEVKRAVPKEFSP 188 (522)
Q Consensus 169 ~~l~Gr~I~V~~a~pk~~~~ 188 (522)
..|++|+|+|+++.++....
T Consensus 87 ~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp CEETTEECEEEECCSCCCSS
T ss_pred CEECCcEEEEEEeCCCCCcc
Confidence 89999999999999876543
No 353
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.5e-13 Score=110.61 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=64.6
Q ss_pred CCcE-EEECCCCCCCCHHH----HHHHHhcc-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEE
Q 009916 4 DLGK-LFIGGISWDTDEER----LKEYFSRY-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (522)
Q Consensus 4 d~r~-LfVgnLP~~~teee----L~e~F~~~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I 75 (522)
++.+ |||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|+ |++..+.+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 599887 23 99999999999999999 99999999999
Q ss_pred EEeeccCCcccc
Q 009916 76 EAKKAVPRDDQN 87 (522)
Q Consensus 76 ~V~~a~~~~~~~ 87 (522)
+|.+|+.+.+..
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999998776543
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=3.9e-13 Score=131.90 Aligned_cols=79 Identities=28% Similarity=0.386 Sum_probs=68.9
Q ss_pred CCCCcEEEECCCCCCC---------CHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hccccc
Q 009916 2 ESDLGKLFIGGISWDT---------DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI 70 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~---------teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i 70 (522)
+.+.++|||+|||.++ +|++|+++|++||+|++|+|++ +||||||+|.+.++|++|+ |+++.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3568999999999998 7999999999999999999986 4789999999999999999 999999
Q ss_pred ------------CCeEEEEeeccCCccc
Q 009916 71 ------------DGRTVEAKKAVPRDDQ 86 (522)
Q Consensus 71 ------------~Gr~I~V~~a~~~~~~ 86 (522)
+++.|.|++|.+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999866443
No 355
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.38 E-value=1.1e-12 Score=130.50 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=74.4
Q ss_pred CCCcceeEecCCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEE
Q 009916 102 PGRTKKIFVGGLASTVTESDFK----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMV 176 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~----~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I 176 (522)
..+.++|||+|||+++|+++|+ ++|++||.|++|+|++ ++++||||||+|.++++|++||+.++ ..|.+++|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3568899999999999999977 8999999999999886 57789999999999999999998888 89999999
Q ss_pred EEEEcCCCCC
Q 009916 177 EVKRAVPKEF 186 (522)
Q Consensus 177 ~V~~a~pk~~ 186 (522)
+|++++++..
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 9999976653
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.7e-12 Score=111.00 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=68.5
Q ss_pred CCCcEEEECCCCCCCC-----------HHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccc
Q 009916 3 SDLGKLFIGGISWDTD-----------EERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHM 69 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~t-----------eeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~ 69 (522)
..+++|+|+||....+ +++|+++|++||+|++|.| .++ .++|||||+|.++++|++|+ ++++.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4689999999944332 6899999999999999966 554 37999999999999999999 99999
Q ss_pred cCCeEEEEeeccCCccc
Q 009916 70 IDGRTVEAKKAVPRDDQ 86 (522)
Q Consensus 70 i~Gr~I~V~~a~~~~~~ 86 (522)
|++++|.|+++.++...
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999876543
No 357
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.35 E-value=1.6e-12 Score=126.01 Aligned_cols=79 Identities=14% Similarity=0.325 Sum_probs=72.6
Q ss_pred CCcceeEecCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009916 103 GRTKKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 103 ~~~~~LfVgnLp~-~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
.+.++|||+|||. ++++++|+++|++||.|++|+|++++ +|||||+|.++++|++||+.++ ..|.+++|+|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4678999999999 99999999999999999999999875 7899999999999999999777 899999999999
Q ss_pred cCCCCC
Q 009916 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
++++..
T Consensus 107 a~~~~~ 112 (229)
T 2adc_A 107 SKHQNV 112 (229)
T ss_dssp CSCCCC
T ss_pred ecCccc
Confidence 987643
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.34 E-value=1.1e-12 Score=128.66 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=68.8
Q ss_pred CCcceeEecCCCCCC---------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc-
Q 009916 103 GRTKKIFVGGLASTV---------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL- 171 (522)
Q Consensus 103 ~~~~~LfVgnLp~~v---------teedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l- 171 (522)
...++|||+|||..+ +|++|+++|++||+|++|+|+.+ ||||||+|.++++|++|++.|+ ..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 467899999999998 79999999999999999999853 7899999999999999999988 777
Q ss_pred -----------CCeEEEEEEcCCCCC
Q 009916 172 -----------NGKMVEVKRAVPKEF 186 (522)
Q Consensus 172 -----------~Gr~I~V~~a~pk~~ 186 (522)
.++.|.|+||+++..
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 359
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=105.10 Aligned_cols=68 Identities=7% Similarity=0.223 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCCCCCCC
Q 009916 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188 (522)
Q Consensus 115 ~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~pk~~~~ 188 (522)
..+++++|+++|++||+|++|.|+ .++||||||+|+++++|++||+.+ ..+.+++|+|++++++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCCCCCC
Confidence 568999999999999999999998 367999999999999999999984 45789999999998776543
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.30 E-value=2.7e-12 Score=120.88 Aligned_cols=77 Identities=14% Similarity=0.336 Sum_probs=71.1
Q ss_pred cceeEecCCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009916 105 TKKIFVGGLAS-TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 105 ~~~LfVgnLp~-~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
.++|||+|||. ++++++|+++|++||.|++|+|++++ +|||||+|.++++|++|++.++ ..|.+++|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999999775 6799999999999999999777 89999999999998
Q ss_pred CCCC
Q 009916 183 PKEF 186 (522)
Q Consensus 183 pk~~ 186 (522)
++..
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7653
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-11 Score=104.83 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=66.0
Q ss_pred CCCcEEEECCCC-------CCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHhcccccCCeEE
Q 009916 3 SDLGKLFIGGIS-------WDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTV 75 (522)
Q Consensus 3 ~d~r~LfVgnLP-------~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~n~~~i~Gr~I 75 (522)
...++|-|.-.+ .+++|++|+++|++||+|++|+|+ +++||||||+|.++++|++||.....+.+++|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l 82 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPL 82 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBC
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeE
Confidence 346778777665 348999999999999999999998 36789999999999999999955667889999
Q ss_pred EEeeccCCcc
Q 009916 76 EAKKAVPRDD 85 (522)
Q Consensus 76 ~V~~a~~~~~ 85 (522)
.|+++.++..
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999876643
No 362
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.30 E-value=5.7e-12 Score=124.63 Aligned_cols=82 Identities=32% Similarity=0.413 Sum_probs=72.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--h-cccccC---CeEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M-DKHMID---GRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~-n~~~i~---Gr~I~ 76 (522)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ +++++|||||+|.++++|++|| + ++..+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 356899999999999999999999999999999999994 7999999999999999999999 5 444444 99999
Q ss_pred EeeccCCcc
Q 009916 77 AKKAVPRDD 85 (522)
Q Consensus 77 V~~a~~~~~ 85 (522)
|+++.+...
T Consensus 173 v~~~~~~~~ 181 (261)
T 3sde_A 173 VEPMEQFDD 181 (261)
T ss_dssp EEECCCEES
T ss_pred EeeccccCc
Confidence 999877543
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=3.9e-12 Score=109.24 Aligned_cols=82 Identities=11% Similarity=0.186 Sum_probs=71.1
Q ss_pred CCcceeEecCC--CCCCC--------HHHHHHHHhhcCCeeEEEEEecCCC--CCcceEEEEEecCHHHHHHHHHhcC-C
Q 009916 103 GRTKKIFVGGL--ASTVT--------ESDFKKYFDQFGTITDVVVMYDHNT--QRPRGFGFITYDSEEAVDRVLHKTF-H 169 (522)
Q Consensus 103 ~~~~~LfVgnL--p~~vt--------eedL~~~F~~fG~V~~v~i~~d~~t--g~~rG~aFVeF~s~e~A~~Al~~~~-~ 169 (522)
.+++.|.|.|+ |..+. ++||+++|++||+|++|+|++++.+ .+++|++||+|.++++|++|++.|+ .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36778999998 44443 3799999999999999999998765 4689999999999999999999999 8
Q ss_pred ccCCeEEEEEEcCCC
Q 009916 170 ELNGKMVEVKRAVPK 184 (522)
Q Consensus 170 ~l~Gr~I~V~~a~pk 184 (522)
.++||+|+|.++.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998654
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=4.2e-12 Score=109.01 Aligned_cols=81 Identities=20% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCCcEEEECCC--CCCCC--------HHHHHHHHhccCCeEEEEEeecCCC--CCcccEEEEEecCHHHHHHHH--hccc
Q 009916 3 SDLGKLFIGGI--SWDTD--------EERLKEYFSRYGEVVEAVIMRDRAT--GRARGFGFVVFADPAVAERVI--MDKH 68 (522)
Q Consensus 3 ~d~r~LfVgnL--P~~~t--------eeeL~e~F~~~G~V~~v~i~~d~~t--g~srG~aFVeF~~~e~A~kAl--~n~~ 68 (522)
..++.|.|.|+ |.++. ++||+++|++||+|++|+|++++.+ .+++|++||+|.++++|++|+ ||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 44443 4799999999999999999998764 468999999999999999999 9999
Q ss_pred ccCCeEEEEeeccCC
Q 009916 69 MIDGRTVEAKKAVPR 83 (522)
Q Consensus 69 ~i~Gr~I~V~~a~~~ 83 (522)
.+++|+|.|.++.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987654
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.24 E-value=2.8e-12 Score=109.86 Aligned_cols=70 Identities=20% Similarity=0.405 Sum_probs=60.8
Q ss_pred ECCCCCCCCHHHHHHHH------------hccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEE
Q 009916 10 IGGISWDTDEERLKEYF------------SRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (522)
Q Consensus 10 VgnLP~~~teeeL~e~F------------~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I 75 (522)
+.+||+++++++|+++| ++||+|++|+|++++. +++||||||+|.++++|++|+ +|++.+++|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566667777777666 9999999999998875 789999999999999999999 99999999999
Q ss_pred EEeec
Q 009916 76 EAKKA 80 (522)
Q Consensus 76 ~V~~a 80 (522)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.24 E-value=1.6e-11 Score=107.66 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=69.8
Q ss_pred CCcEEEECCCCC--C---CCHHHHHHHHhccCCeEEEEEeecCC----CCCcccEEEEEecCHHHHHHHH--hcccccCC
Q 009916 4 DLGKLFIGGISW--D---TDEERLKEYFSRYGEVVEAVIMRDRA----TGRARGFGFVVFADPAVAERVI--MDKHMIDG 72 (522)
Q Consensus 4 d~r~LfVgnLP~--~---~teeeL~e~F~~~G~V~~v~i~~d~~----tg~srG~aFVeF~~~e~A~kAl--~n~~~i~G 72 (522)
.++.|+|+|+-. + -.++||++.|++||+|++|+|++++. +++++|++||+|.++++|++|+ +|+..+++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 688999999942 2 24789999999999999999999864 4678999999999999999999 99999999
Q ss_pred eEEEEeeccC
Q 009916 73 RTVEAKKAVP 82 (522)
Q Consensus 73 r~I~V~~a~~ 82 (522)
|+|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.23 E-value=4.1e-12 Score=108.88 Aligned_cols=71 Identities=15% Similarity=0.381 Sum_probs=62.5
Q ss_pred ecCCCCCCCHHHHHHHH------------hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEE
Q 009916 110 VGGLASTVTESDFKKYF------------DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMV 176 (522)
Q Consensus 110 VgnLp~~vteedL~~~F------------~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I 176 (522)
+.+||..+++++|+++| ++||+|++|.|++++. ++++|||||+|.++++|++|++.++ ..|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677778887777666 9999999999998875 6899999999999999999999888 89999999
Q ss_pred EEEEc
Q 009916 177 EVKRA 181 (522)
Q Consensus 177 ~V~~a 181 (522)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=2.1e-11 Score=106.90 Aligned_cols=80 Identities=9% Similarity=0.196 Sum_probs=69.7
Q ss_pred CcceeEecCCCC--CC---CHHHHHHHHhhcCCeeEEEEEecCC----CCCcceEEEEEecCHHHHHHHHHhcC-CccCC
Q 009916 104 RTKKIFVGGLAS--TV---TESDFKKYFDQFGTITDVVVMYDHN----TQRPRGFGFITYDSEEAVDRVLHKTF-HELNG 173 (522)
Q Consensus 104 ~~~~LfVgnLp~--~v---teedL~~~F~~fG~V~~v~i~~d~~----tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~G 173 (522)
++++|+|.|+-. ++ .++||++.|++||+|++|+|++++. +.+++|++||+|.++++|++|++.|+ ..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 577889998832 22 3689999999999999999999875 45778999999999999999999999 89999
Q ss_pred eEEEEEEcCC
Q 009916 174 KMVEVKRAVP 183 (522)
Q Consensus 174 r~I~V~~a~p 183 (522)
|+|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=2.7e-10 Score=117.41 Aligned_cols=109 Identities=9% Similarity=0.126 Sum_probs=76.1
Q ss_pred CCCCcEEEECC--CCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccC---Ce-
Q 009916 2 ESDLGKLFIGG--ISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID---GR- 73 (522)
Q Consensus 2 e~d~r~LfVgn--LP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~---Gr- 73 (522)
+..+++|||+| |++++||++|+++|++||+|++|+|.+ +||||||+|.+.++|++|+ +|++++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 35789999999 578999999999999999999887743 4789999999999999999 8888773 45
Q ss_pred -EEEEeeccCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhc
Q 009916 74 -TVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF 129 (522)
Q Consensus 74 -~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~f 129 (522)
.|.|..+.... ..... .. ..+....+ +|.-+++++-.++.+..
T Consensus 89 ~~ly~~~~~~~~--~~~~~----~~----~lp~Gl~~---~p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 89 ITLYLNFVEKVQ--WKELR----PQ----ALPPGLMV---VEEIISSEEEKMLLESV 132 (345)
T ss_dssp EECEEEECSSEE--EEEEE----CC----SCCTTEEE---ETTCSCHHHHHHHHTTC
T ss_pred eEEEEEEeeccc--ccccc----cc----cCCCceEE---EcCcCCHHHHHHHHHhc
Confidence 45555553211 11100 00 01112333 36668877766776654
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.05 E-value=3.4e-10 Score=116.60 Aligned_cols=75 Identities=15% Similarity=0.265 Sum_probs=63.5
Q ss_pred CCCcceeEecC--CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc---CCe-
Q 009916 102 PGRTKKIFVGG--LASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL---NGK- 174 (522)
Q Consensus 102 ~~~~~~LfVgn--Lp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l---~Gr- 174 (522)
..++++|||+| |++.+||++|+++|++||+|++|.+.. .||||||+|++.++|++||+.|+ +++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 35788999999 588999999999999999999887753 47899999999999999999999 655 345
Q ss_pred -EEEEEEcC
Q 009916 175 -MVEVKRAV 182 (522)
Q Consensus 175 -~I~V~~a~ 182 (522)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 56777764
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.04 E-value=3.9e-10 Score=98.22 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=65.2
Q ss_pred CCcceeEecCCCCCC----------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc
Q 009916 103 GRTKKIFVGGLASTV----------TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL 171 (522)
Q Consensus 103 ~~~~~LfVgnLp~~v----------teedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l 171 (522)
.++++|.|.|+=... .++||+++|++||.|++|.|.++. ++|++||+|.++++|++|++.|+ ..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457788888873221 246899999999999999997653 58999999999999999999998 899
Q ss_pred CCeEEEEEEcCCC
Q 009916 172 NGKMVEVKRAVPK 184 (522)
Q Consensus 172 ~Gr~I~V~~a~pk 184 (522)
+||+|.|.++...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999998643
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.99 E-value=7.6e-10 Score=96.40 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=65.1
Q ss_pred CCcEEEECCCCCCC----------CHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccC
Q 009916 4 DLGKLFIGGISWDT----------DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID 71 (522)
Q Consensus 4 d~r~LfVgnLP~~~----------teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~ 71 (522)
.++.|.|.|+=... .++||+++|++||+|++|+|.++. .+|++||+|.++++|++|+ ||+..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46778888874322 245889999999999999997653 5899999999999999999 9999999
Q ss_pred CeEEEEeeccCCcc
Q 009916 72 GRTVEAKKAVPRDD 85 (522)
Q Consensus 72 Gr~I~V~~a~~~~~ 85 (522)
||+|.|+++.....
T Consensus 82 GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 82 GKMITAAYVPLPTY 95 (114)
T ss_dssp TEECEEEEECHHHH
T ss_pred CEEEEEEEEcHHHH
Confidence 99999999865443
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=2.3e-09 Score=94.16 Aligned_cols=77 Identities=19% Similarity=0.097 Sum_probs=66.6
Q ss_pred CCCcEEEECCCCCC-CCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecC-HHHHHHHH--h--cccccCCeEEE
Q 009916 3 SDLGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD-PAVAERVI--M--DKHMIDGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~-~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~-~e~A~kAl--~--n~~~i~Gr~I~ 76 (522)
...+.|+|+||+++ +++++|+++|++||+|..|.++++.. .|||+|.+ +++|++|+ + .+.+|++..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35688999999999 99999999999999999999999876 59999999 78999888 4 47889999888
Q ss_pred EeeccCCcc
Q 009916 77 AKKAVPRDD 85 (522)
Q Consensus 77 V~~a~~~~~ 85 (522)
++...-.++
T Consensus 90 ~evL~GeeE 98 (121)
T 1owx_A 90 WEVLEGEVE 98 (121)
T ss_dssp EEECCHHHH
T ss_pred EEECCCHHH
Confidence 877654443
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=7.3e-09 Score=90.94 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=68.7
Q ss_pred CCCCCCcceeEecCCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC-HHHHHHHHHhcC---CccCC
Q 009916 99 SPGPGRTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLHKTF---HELNG 173 (522)
Q Consensus 99 ~~~~~~~~~LfVgnLp~~-vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s-~e~A~~Al~~~~---~~l~G 173 (522)
+....+...|+|+||+.. +++++|+++|++||+|+.|.++++.. .|||+|.+ +++|++|+++++ .+|++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 334567789999999999 99999999999999999999998876 59999999 899999999884 58999
Q ss_pred eEEEEEEcC
Q 009916 174 KMVEVKRAV 182 (522)
Q Consensus 174 r~I~V~~a~ 182 (522)
..++|+...
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 999988654
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=6.3e-09 Score=86.35 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=60.8
Q ss_pred CcceeEecCCC----CCCCH----HHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeE
Q 009916 104 RTKKIFVGGLA----STVTE----SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKM 175 (522)
Q Consensus 104 ~~~~LfVgnLp----~~vte----edL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~ 175 (522)
+..+|+|.-++ .+..+ .+|.+.|.+||+|..++|+.|+ +||+|++.++|.+||++...++.||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 45677777766 23333 6799999999999999999874 89999999999999994449999999
Q ss_pred EEEEEcCCC
Q 009916 176 VEVKRAVPK 184 (522)
Q Consensus 176 I~V~~a~pk 184 (522)
|+|++++|.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999875
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=3.9e-08 Score=81.62 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=61.4
Q ss_pred CCcEEEECCCCC----CCCH----HHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeE
Q 009916 4 DLGKLFIGGISW----DTDE----ERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRT 74 (522)
Q Consensus 4 d~r~LfVgnLP~----~~te----eeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~ 74 (522)
...||+|.-+|. ++.+ .+|++.|++||+|..++|+.++ +||+|.+.++|.+|| |++.++.+|.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 456788877762 3333 5789999999999999999874 899999999999999 9999999999
Q ss_pred EEEeeccCC
Q 009916 75 VEAKKAVPR 83 (522)
Q Consensus 75 I~V~~a~~~ 83 (522)
|+|+.+.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999988764
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=2.8e-08 Score=82.88 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=60.8
Q ss_pred CCcceeEecCCCCC-----CCH----HHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCC
Q 009916 103 GRTKKIFVGGLAST-----VTE----SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNG 173 (522)
Q Consensus 103 ~~~~~LfVgnLp~~-----vte----edL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~G 173 (522)
++..+|+|.-++.. ..+ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+||++...++.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 45678888887643 222 5799999999999999999874 999999999999999944499999
Q ss_pred eEEEEEEcCC
Q 009916 174 KMVEVKRAVP 183 (522)
Q Consensus 174 r~I~V~~a~p 183 (522)
|.|+|++..|
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998764
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=2.4e-07 Score=88.96 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=60.1
Q ss_pred CCHHHHHHHHhhcCCeeEEEEEecCC----CCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 009916 117 VTESDFKKYFDQFGTITDVVVMYDHN----TQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (522)
Q Consensus 117 vteedL~~~F~~fG~V~~v~i~~d~~----tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~p 183 (522)
-.+++|++.|++||.|+++.|+++.. +++++|++||+|.++++|++|++.++ ..++||+|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45789999999999999999996654 44899999999999999999999999 899999999999764
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.2e-07 Score=79.16 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=60.4
Q ss_pred CCcEEEECCCCCC-----CCH----HHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCe
Q 009916 4 DLGKLFIGGISWD-----TDE----ERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGR 73 (522)
Q Consensus 4 d~r~LfVgnLP~~-----~te----eeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr 73 (522)
...||+|.-++.+ +.+ .+|++.|++||+|..++|+.++ +||+|.+.++|.+|| ++..++.+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4568899888743 222 5689999999999999999874 999999999999999 999999999
Q ss_pred EEEEeeccC
Q 009916 74 TVEAKKAVP 82 (522)
Q Consensus 74 ~I~V~~a~~ 82 (522)
.|+|+...+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999987643
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.48 E-value=2.3e-07 Score=89.08 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=59.2
Q ss_pred CCHHHHHHHHhccCCeEEEEEeecCC----CCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEeeccC
Q 009916 17 TDEERLKEYFSRYGEVVEAVIMRDRA----TGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 17 ~teeeL~e~F~~~G~V~~v~i~~d~~----tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~~a~~ 82 (522)
-.+++|++.|++||+|.+++|+++.. +++++|++||+|.+.++|++|+ +++..++||+|.+.....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 46789999999999999999986544 4589999999999999999999 999999999999998754
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.3e-06 Score=72.30 Aligned_cols=88 Identities=26% Similarity=0.397 Sum_probs=72.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhcc-----CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCCeEEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRY-----GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~-----G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~Gr~I~ 76 (522)
.-.++|.|.|||.+++++.|+-+|++- |+|++++... .-|+|+|.++++|+++| ...|.|++.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 346789999999999999999999983 6888887755 26999999999999999 449999999999
Q ss_pred EeeccCCccccccccccCCCCCCCCCCCcceeEecCCCCCCC
Q 009916 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVT 118 (522)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vt 118 (522)
|....++ ...+|++.+|++.++
T Consensus 78 V~P~~~~--------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR--------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC--------------------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC--------------------CcceEeeecCCCCCC
Confidence 9775443 345788888887764
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=5.2e-06 Score=70.78 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=63.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhc-----CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEE
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQF-----GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~f-----G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (522)
..++|-|-+||.+++++.|+.+.+++ +.|++|.++.|.. =|+|+|.++.+|-+|.-.++ .+|++|+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46789999999999999999999999 9999999998876 69999999888888776666 899999999
Q ss_pred EEE
Q 009916 178 VKR 180 (522)
Q Consensus 178 V~~ 180 (522)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=6.4e-06 Score=70.22 Aligned_cols=72 Identities=8% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhcc-----CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEE
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRY-----GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTV 75 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~-----G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I 75 (522)
++.++|-|-+||-.+++..|+.+++++ ++++.+.++.|.. =|+|+|+|...|-||. +++.+|++|+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 457899999999999999999999999 9999999999864 6999999999999987 99999999999
Q ss_pred EEeec
Q 009916 76 EAKKA 80 (522)
Q Consensus 76 ~V~~a 80 (522)
++-..
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98644
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=8.3e-05 Score=62.78 Aligned_cols=75 Identities=24% Similarity=0.365 Sum_probs=65.0
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhc-----CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEE
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQF-----GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~f-----G~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V 178 (522)
..++|.|.|||..+.++.|+-+|+.- |+|++++... .-|+|+|.+.+.|+++|++..|.|++.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 45789999999999999999999872 6788887753 2699999999999999999889999999999
Q ss_pred EEcCCCCC
Q 009916 179 KRAVPKEF 186 (522)
Q Consensus 179 ~~a~pk~~ 186 (522)
....++..
T Consensus 79 ~P~~~~~~ 86 (104)
T 2dhx_A 79 RPAPPRAP 86 (104)
T ss_dssp EECCCCCC
T ss_pred EcCCCCCc
Confidence 88766554
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.11 E-value=0.00091 Score=55.46 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=52.6
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCC--cccEEEEEecCHHHHHHHH--hcccccC
Q 009916 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGR--ARGFGFVVFADPAVAERVI--MDKHMID 71 (522)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~--srG~aFVeF~~~e~A~kAl--~n~~~i~ 71 (522)
++|.|++||+.+||+++.+.+....++.....+..+.+.+ .-.-|||.|++.|++.... .+++.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 6899999999999999999999998887777766554322 2345999999999998888 6666553
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.0025 Score=53.92 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=63.0
Q ss_pred CcceeEecCCCCCCC-----HHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEE
Q 009916 104 RTKKIFVGGLASTVT-----ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (522)
Q Consensus 104 ~~~~LfVgnLp~~vt-----eedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (522)
-.++|+|.||+.++- .++++++|..|.++......+.-. -..|.|.++++|.+|..+++ ..+.|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 456899999988662 257899999999988877775422 47899999999999999999 799999999
Q ss_pred EEEcCCCC
Q 009916 178 VKRAVPKE 185 (522)
Q Consensus 178 V~~a~pk~ 185 (522)
|-++.+-.
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99998544
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.03 E-value=0.0018 Score=54.83 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=61.0
Q ss_pred CcEEEECCCCCCC-C----HHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEE
Q 009916 5 LGKLFIGGISWDT-D----EERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (522)
Q Consensus 5 ~r~LfVgnLP~~~-t----eeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V 77 (522)
-++|+|.||+.++ + .++++++|..|.++.....++.= .-..|.|.++++|.+|- +++..+.|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999875 2 25778999999999888777642 24689999999999997 9999999999999
Q ss_pred eeccCC
Q 009916 78 KKAVPR 83 (522)
Q Consensus 78 ~~a~~~ 83 (522)
..+++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998844
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0023 Score=55.58 Aligned_cols=73 Identities=12% Similarity=0.248 Sum_probs=58.8
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-hcccccCC-eEEEEeecc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDG-RTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~n~~~i~G-r~I~V~~a~ 81 (522)
+.+-|.|-+.|.+. ...|.+.|++||+|++...... .-+-.|.|.++.+|++|| +|+..|.+ ..|-|++..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 46778899999884 6788899999999988776222 349999999999999999 88888874 777787754
Q ss_pred CC
Q 009916 82 PR 83 (522)
Q Consensus 82 ~~ 83 (522)
.+
T Consensus 96 d~ 97 (119)
T 1wwh_A 96 DK 97 (119)
T ss_dssp CH
T ss_pred CH
Confidence 33
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.93 E-value=0.0021 Score=53.60 Aligned_cols=58 Identities=22% Similarity=0.412 Sum_probs=48.5
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhc
Q 009916 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~ 167 (522)
.+...+.++| .+|.++...||.++|+.||.| .|+.+.|. .|||.|.+++.|+.|+.++
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455667777 999999999999999999854 57777663 7999999999999999865
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.84 E-value=0.002 Score=53.78 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=44.7
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
..+.++| .+|+++..+||.++|++||.| .|+.+-|- -|||.|.+++.|..|+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al 66 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAV 66 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 3566777 999999999999999999965 47777663 7999999999999998
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.63 E-value=0.0059 Score=52.96 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=59.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCC-eEEEEEEc
Q 009916 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNG-KMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~G-r~I~V~~a 181 (522)
...+.|.|-+.|... .+.|-+.|++||+|.+...... .-...|+|+++.+|++||.++...|.+ -+|-|+..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 356778899999885 5678888999999998876222 238999999999999999998888874 78888885
Q ss_pred C
Q 009916 182 V 182 (522)
Q Consensus 182 ~ 182 (522)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.30 E-value=0.012 Score=48.65 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=50.9
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC--cceEEEEEecCHHHHHHHHHhcC
Q 009916 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR--PRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~--~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
.+|.|++||..+||+++.+.+.....+.....+..+.+.+ .-.-|+|.|.+.|++..-.+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 5899999999999999999999887776666665543332 23569999999999999888776
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.15 E-value=0.0057 Score=51.18 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=46.0
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhc
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~ 167 (522)
+.+.++| .+|.++...||.++|+.||. ..|+.+-|. .|||.|.+++.|+.|+..+
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455666 99999999999999999984 467777653 7999999999999999865
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.01 E-value=0.0063 Score=50.92 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=43.6
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009916 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
.+.++| .+|+++..+||.++|++||.| .|+.+-|- -|||.|.+++.|..|+
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al 56 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAV 56 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHH
Confidence 355667 999999999999999999854 57777763 7999999999999998
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.91 E-value=0.0047 Score=54.35 Aligned_cols=81 Identities=11% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeec---------CCCC-----CcccEEEEEecCHHHHHHHH-hc
Q 009916 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRD---------RATG-----RARGFGFVVFADPAVAERVI-MD 66 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d---------~~tg-----~srG~aFVeF~~~e~A~kAl-~n 66 (522)
+.....|.|-+.|++ ....|.+.|++||.|.+-.-+.+ ++.. ....+-.|+|.++.+|++|| .|
T Consensus 4 ~~~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 4 SNGELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp ----CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred ccCceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 456677888899876 45578889999999876321111 0001 13468899999999999999 99
Q ss_pred ccccCCeEEEEeeccCC
Q 009916 67 KHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 67 ~~~i~Gr~I~V~~a~~~ 83 (522)
++.|.+..|-|++..+.
T Consensus 83 G~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp TCEETTEECEEEECCHH
T ss_pred CeEeCcEEEEEEECCHH
Confidence 99999998888877543
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.70 E-value=0.0056 Score=51.19 Aligned_cols=67 Identities=10% Similarity=0.027 Sum_probs=47.0
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCC--cccEEEEEecCHHHHHHHH--hccccc
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGR--ARGFGFVVFADPAVAERVI--MDKHMI 70 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~--srG~aFVeF~~~e~A~kAl--~n~~~i 70 (522)
.+-+|.|+.||+.+||+++.+.+..+=++.....+..+.+-+ .-.-|||.|++.|++.... .+++.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 456899999999999999998888765554333333322221 1235999999999998887 455444
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.19 E-value=0.0078 Score=63.98 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=42.9
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009916 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
..|.|+|. .|.++++++|.++|++||+|.++.+-+++. -||.|||.+++++.+++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHH
Confidence 46899997 899999999999999999999988876542 69999999999999887
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.54 E-value=0.017 Score=61.39 Aligned_cols=56 Identities=16% Similarity=0.427 Sum_probs=42.6
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHh
Q 009916 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~ 166 (522)
.+.|+|. .|..+++++|.++|++||+|.++.+.+++. -||+|||.++++++++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 4689997 799999999999999999999988876532 4999999999999988754
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.80 E-value=0.066 Score=47.06 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=55.5
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeE-EEEEec--------CCCCC-----cceEEEEEecCHHHHHHHHHhcCCc
Q 009916 105 TKKIFVGGLASTVTESDFKKYFDQFGTITD-VVVMYD--------HNTQR-----PRGFGFITYDSEEAVDRVLHKTFHE 170 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~V~~-v~i~~d--------~~tg~-----~rG~aFVeF~s~e~A~~Al~~~~~~ 170 (522)
...|.|-+.|++.+. .+-+.|++||.|.+ +.+.++ +...+ ......|+|+++.+|++||+++...
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 446778888776554 56678899999866 222110 00011 1347799999999999999999999
Q ss_pred cCCeEEEEEEcCC
Q 009916 171 LNGKMVEVKRAVP 183 (522)
Q Consensus 171 l~Gr~I~V~~a~p 183 (522)
|.|.+|-|+...+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999999988764
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.19 E-value=0.055 Score=45.14 Aligned_cols=65 Identities=6% Similarity=0.109 Sum_probs=45.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCc--ceEEEEEecCHHHHHHHHHhcC
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRP--RGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~--rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
.+-+|.|+.||+.+||+++.+.+...-++.....+.-+.+.++ -.-|+|.|.+.|++..-.+..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 4568999999999999998888776544432222222222211 1358999999999999988776
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.95 E-value=1.9 Score=46.24 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=42.1
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009916 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
.+.|+|+ +|..+...+|.++|+.|+.| +|+.+.+ ..|||.|.+++.|+.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAV 490 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHH
Confidence 4567776 99999999999999999965 4555444 27999999999999988
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.80 E-value=2.1 Score=45.84 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=45.9
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC
Q 009916 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
+.+.+.++|. +|..+...+|.++|+.|+. .+|+.+.|. .|||.|.+.++|..+++.+.
T Consensus 437 ~~R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 437 PKRDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CCGGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CCcCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3455666665 8999999999999999995 356555432 69999999999999998764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=53.19 E-value=84 Score=25.50 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=55.0
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-C-------ccCCeE
Q 009916 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H-------ELNGKM 175 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~-------~l~Gr~ 175 (522)
..+-|.|-|+|..+-..++.-.....|---.|..+ .|.|.|.|.+.++..-|++++- + +|.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 45677888999999998887777777766566655 2469999999999999998752 2 677877
Q ss_pred EEEEEcCCC
Q 009916 176 VEVKRAVPK 184 (522)
Q Consensus 176 I~V~~a~pk 184 (522)
+.|-...|.
T Consensus 83 cdvistipe 91 (129)
T 4eyt_A 83 CDVISTIPE 91 (129)
T ss_dssp EEEECCCCH
T ss_pred eeeeecCCc
Confidence 777655543
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=49.87 E-value=91 Score=25.30 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=42.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009916 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
+..|-|-|-|||..+-..|+.-.....|---.|..+. |.|.|.|.+.++.+.|+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlai 63 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAI 63 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHH
Confidence 3567788999999999999887777777544454433 47999999999999998
No 405
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=42.63 E-value=96 Score=25.63 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCCC
Q 009916 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184 (522)
Q Consensus 112 nLp~~vteedL~~~F-~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~pk 184 (522)
.++..+.-+||.... +.||.-.++..+ +. ...|-..+.+|.++||+.++..-.-+.|+|-...|+
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 457778888877666 568987777666 22 367899999999999999884333344444444443
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=42.48 E-value=51 Score=25.03 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=39.4
Q ss_pred EEEECCCCCC-CCHHHHHHHHhccC-----CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--hcccccCCeEEEEe
Q 009916 7 KLFIGGISWD-TDEERLKEYFSRYG-----EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 7 ~LfVgnLP~~-~teeeL~e~F~~~G-----~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~n~~~i~Gr~I~V~ 78 (522)
+|+|.-=-.+ ++..+|..++..-+ +|-.|.|..+ |.||+-.... |++++ ++...++++++.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 5677433333 77788888887543 3556666443 7898886654 44444 77788899999887
Q ss_pred ecc
Q 009916 79 KAV 81 (522)
Q Consensus 79 ~a~ 81 (522)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 407
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=38.94 E-value=1.6e+02 Score=24.18 Aligned_cols=134 Identities=12% Similarity=0.181 Sum_probs=81.0
Q ss_pred CCCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecC----HHHHHHHHhcccccCCeEEE
Q 009916 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD----PAVAERVIMDKHMIDGRTVE 76 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~----~e~A~kAl~n~~~i~Gr~I~ 76 (522)
|.....+|.|.++.-.--...|++.+++.-.|..+.+-... .-+-|+|.. .+...+++.+ .|....
T Consensus 1 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~----~G~~~~ 70 (149)
T 2ew9_A 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMA------GKAEIKYDPEVIQPLEIAQFIQD----LGFEAA 70 (149)
T ss_dssp CCCEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHH----HTCEEE
T ss_pred CCcEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEEcCCCCCHHHHHHHHhc----CCCceE
Confidence 44555678888888776677899999887667666654322 246677743 3344444411 121222
Q ss_pred EeeccCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC
Q 009916 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156 (522)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s 156 (522)
+.. ... ......++.|.++.-..-...|++.+.+.-.|.++.+-... ..+.|+|+.
T Consensus 71 ~~~--~~~----------------~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~ 126 (149)
T 2ew9_A 71 VME--DYA----------------GSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALAT------SKALVKFDP 126 (149)
T ss_dssp ECS--CSC----------------CSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTT------TEEEEECCT
T ss_pred eec--ccc----------------cccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCC------CEEEEEECC
Confidence 110 000 00123467888887655667889999888778887775432 268889863
Q ss_pred ----HHHHHHHHHhcC
Q 009916 157 ----EEAVDRVLHKTF 168 (522)
Q Consensus 157 ----~e~A~~Al~~~~ 168 (522)
.++..++|+...
T Consensus 127 ~~~~~~~i~~~i~~~G 142 (149)
T 2ew9_A 127 EIIGPRDIIKIIEEIG 142 (149)
T ss_dssp TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhCC
Confidence 566777777654
No 408
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=34.62 E-value=81 Score=23.04 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=43.7
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC
Q 009916 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
..++.|.++.=..-...|++.+.+ -.|..+.+-.. .+-+.|+|++.++..++|+...
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 456888888777778899999999 77887777433 3467888887778888887765
No 409
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=33.08 E-value=62 Score=29.80 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=23.5
Q ss_pred ccEEEEEecCHHHHHHHHhcccccCCeEEEEee
Q 009916 47 RGFGFVVFADPAVAERVIMDKHMIDGRTVEAKK 79 (522)
Q Consensus 47 rG~aFVeF~~~e~A~kAl~n~~~i~Gr~I~V~~ 79 (522)
+--.||.|+++++|.+++..+..|. +|.|--
T Consensus 97 ~~~v~il~k~p~d~~~lve~Gv~i~--~vNvG~ 127 (187)
T 3lfj_A 97 EEKVFLLFKNIDTCKRVMDGGLPIT--TLNIGG 127 (187)
T ss_dssp CEEEEEEESSHHHHHHHHHTTCCCS--EEEEEE
T ss_pred CceEEEEECCHHHHHHHHHcCCCCC--EEEECC
Confidence 3468999999999999997666664 555543
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.76 E-value=1.9e+02 Score=22.95 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=28.2
Q ss_pred CHHHHHHHHhc----cC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009916 18 DEERLKEYFSR----YG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 18 teeeL~e~F~~----~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
.|+++++.+++ .+ +|.++.+.. ...||-||++...++...++
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I 67 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELI 67 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHH
Confidence 45666665543 22 355554433 37899999999999888887
No 411
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=28.09 E-value=68 Score=29.72 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=66.1
Q ss_pred CCCcEEEECCCCCCC-CHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEe----cCHHHHHHHH-hcccccCCeEEE
Q 009916 3 SDLGKLFIGGISWDT-DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVF----ADPAVAERVI-MDKHMIDGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~-teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF----~~~e~A~kAl-~n~~~i~Gr~I~ 76 (522)
++..+|.|.++|... ...+|.+.|++.+.- +.++....+..+.+...+.| .+.+.+.+++ .-..++.-..|.
T Consensus 33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~In--VDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~ 110 (200)
T 4go7_X 33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVN--IDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL 110 (200)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCC--CCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEE
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHhCcc--eEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEE
Confidence 566778888888663 345677777888743 34443221122223444444 2344555555 333344455555
Q ss_pred EeeccCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCcceEEEEEec
Q 009916 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYD 155 (522)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~V-~~v~i~~d~~tg~~rG~aFVeF~ 155 (522)
++. ...+|-|-+.-..-+.--..++|+....- ..|.++...+. +=.+.|
T Consensus 111 ~~~------------------------~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi---~IS~vV--- 160 (200)
T 4go7_X 111 YDD------------------------HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEI---RISVLC--- 160 (200)
T ss_dssp EEC------------------------CEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSS---EEEEEE---
T ss_pred Eec------------------------CeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCC---EEEEEE---
Confidence 532 12234333333344444455566544220 23444433332 213444
Q ss_pred CHHHHHHHHHhcCC--ccCCeE
Q 009916 156 SEEAVDRVLHKTFH--ELNGKM 175 (522)
Q Consensus 156 s~e~A~~Al~~~~~--~l~Gr~ 175 (522)
+++++++|++.++. .|...+
T Consensus 161 ~~~d~~~Av~aLH~~F~L~~~~ 182 (200)
T 4go7_X 161 RDTELDKAVVALHEAFGLGGDE 182 (200)
T ss_dssp EGGGHHHHHHHHHHHHTC----
T ss_pred eHHHHHHHHHHHHHHhCCCCCc
Confidence 46666677766663 444443
No 412
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=27.41 E-value=1.1e+02 Score=25.03 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEE
Q 009916 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178 (522)
Q Consensus 112 nLp~~vteedL~~~F-~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V 178 (522)
-++..+.-+||+... ..||.-.++..+.+ .-.|-..+.++.++|++.++....=|.|+|
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~~kSLrI 94 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKI 94 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccCccccceEE
Confidence 457778888887776 46998888877733 257888999999999999874333333333
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.72 E-value=79 Score=28.74 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=38.4
Q ss_pred EEEECCCCCC---------CCHHHHHHHH--hccCCeEEEEEeecCCCCCcccEEEEEecCHH-HHHHHH
Q 009916 7 KLFIGGISWD---------TDEERLKEYF--SRYGEVVEAVIMRDRATGRARGFGFVVFADPA-VAERVI 64 (522)
Q Consensus 7 ~LfVgnLP~~---------~teeeL~e~F--~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e-~A~kAl 64 (522)
.+.|-|+|.+ ...++|++.| ..|.++. |+.+..+. -.+|++.|+|...- --..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 4578899872 3457999977 9999875 66666543 48899999996633 333444
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.54 E-value=1e+02 Score=27.97 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=37.1
Q ss_pred eeEecCCCC-C--------CCHHHHHHHH--hhcCCeeEEEEEecCCCCCcceEEEEEecC-HHHHHHHHHh
Q 009916 107 KIFVGGLAS-T--------VTESDFKKYF--DQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLHK 166 (522)
Q Consensus 107 ~LfVgnLp~-~--------vteedL~~~F--~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s-~e~A~~Al~~ 166 (522)
++.|-|+|. . ...++|++.| ..|.+++ |+.+..+. -.+|+++|+|.. -.-.+.|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHHH
Confidence 455666665 1 3447899977 8898865 65555543 467899999965 4444444443
No 415
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.07 E-value=2e+02 Score=28.99 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.2
Q ss_pred EEEECCCCCCCCHHHHHHHHhc
Q 009916 7 KLFIGGISWDTDEERLKEYFSR 28 (522)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~F~~ 28 (522)
-+.|.|||+.++..-|.++++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888874
No 416
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.04 E-value=61 Score=31.34 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=33.7
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009916 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
.-+.|.|||+.++..-|.++++. ..+..+.+|.. +|.|++.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q----------------kEva~Rl~ 152 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ----------------KEVAERMT 152 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE----------------HHHHHHHT
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee----------------eeeeeecc
Confidence 45789999999999999999987 66666666554 58888887
No 417
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=24.86 E-value=1.3e+02 Score=24.32 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 009916 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (522)
Q Consensus 112 nLp~~vteedL~~~F-~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~p 183 (522)
-++..+.-+||+... ..||.-.++..+.+ .-.|-..+.++.++|++.++....=|.|+|-...+
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~ 83 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQ 83 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEEEEEcC
Confidence 346778888887766 46898888777633 24688899999999999988444444445444443
No 418
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=24.64 E-value=1.5e+02 Score=23.65 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=34.9
Q ss_pred eeEecCCCCCCCHHHHHHHHh-------hcCCeeEEEEEecCCCCCcce---EEEEEecCHHHHHH
Q 009916 107 KIFVGGLASTVTESDFKKYFD-------QFGTITDVVVMYDHNTQRPRG---FGFITYDSEEAVDR 162 (522)
Q Consensus 107 ~LfVgnLp~~vteedL~~~F~-------~fG~V~~v~i~~d~~tg~~rG---~aFVeF~s~e~A~~ 162 (522)
.|.+-.|...+++++++++.+ +...|+.+.+-++.. ...++ .-.++|+++++.++
T Consensus 7 HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 7 HVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 344556778888776655553 356677887777654 33333 34678888887754
No 419
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=23.48 E-value=1.1e+02 Score=25.47 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEE
Q 009916 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179 (522)
Q Consensus 112 nLp~~vteedL~~~F-~~fG~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~ 179 (522)
-++..+.-+||++.. ..||.-.++..+.+ .-.|-..+.++.++|++.++....=|.|+|-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs~~mkSLRIl 106 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRIL 106 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccCccccceEEE
Confidence 457778888887766 46898888877733 2468889999999999998843333444443
No 420
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=23.25 E-value=41 Score=32.72 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=34.4
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009916 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
..+.|.|||+.++..-|.++++....+..+.+|.. +|.|++.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q----------------kEva~Rl~ 157 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ----------------NEVVERMV 157 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE----------------HHHHHHHT
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee----------------HHHHHHHh
Confidence 45789999999999999999987656666666654 57888887
No 421
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=23.04 E-value=2.5e+02 Score=22.75 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=37.3
Q ss_pred ceeEecCCCCCCCHHHHHHHHhh-------cCCeeEEEEEecCCC-CCcce---EEEEEecCHHHHHHHH
Q 009916 106 KKIFVGGLASTVTESDFKKYFDQ-------FGTITDVVVMYDHNT-QRPRG---FGFITYDSEEAVDRVL 164 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~-------fG~V~~v~i~~d~~t-g~~rG---~aFVeF~s~e~A~~Al 164 (522)
+.|.+-.|...+++++++++.+. .-.|+.+.+-++... ...++ .-.++|++.++.++-+
T Consensus 12 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 34555678888888876666543 455777777665442 22233 3567899988876533
No 422
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=22.37 E-value=1.6e+02 Score=27.34 Aligned_cols=27 Identities=7% Similarity=0.028 Sum_probs=23.2
Q ss_pred cceEEEEEecCHHHHHHHHHhcCCccC
Q 009916 146 PRGFGFITYDSEEAVDRVLHKTFHELN 172 (522)
Q Consensus 146 ~rG~aFVeF~s~e~A~~Al~~~~~~l~ 172 (522)
.|||.|||=.++.++++||+.+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 689999999999999999988875433
No 423
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=22.19 E-value=2.1e+02 Score=25.91 Aligned_cols=127 Identities=9% Similarity=-0.051 Sum_probs=62.8
Q ss_pred cEEEECCC----CCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEec-CHHHHHHHH----hcccccCCeEEE
Q 009916 6 GKLFIGGI----SWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-DPAVAERVI----MDKHMIDGRTVE 76 (522)
Q Consensus 6 r~LfVgnL----P~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~-~~e~A~kAl----~n~~~i~Gr~I~ 76 (522)
..+++++| ...+.-.||+++|+..| ..+|+-.-. + |-.+.+-. ++++.++.| .+..-++ ..+.
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~--S----GNvvF~s~~~~~~l~~~ie~~l~~~fg~~-v~v~ 78 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYIN--S----GNIFFTSIDSKAQLVEKLETFFAVHYPFI-QSFS 78 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETT--T----TEEEEEECSCHHHHHHHHHHHHHHHCTTC-CCCE
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEe--c----CCEEEecCCCHHHHHHHHHHHHHHhcCCC-CCEE
Confidence 34677777 44588999999999987 345554332 2 33333222 323333333 1212122 1233
Q ss_pred EeeccCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEE-Ee
Q 009916 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFI-TY 154 (522)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG-~V~~v~i~~d~~tg~~rG~aFV-eF 154 (522)
|... .+-.......+.... .+..+++|-=|+..++.++|.+.+.... ..+.+.+.. ...|+ .|
T Consensus 79 vrs~--~el~~i~~~~Pf~~~-----~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~~--------~~iy~~~~ 143 (183)
T 2hiy_A 79 LLSL--EDFEAELENLPAWWS-----RDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGK--------LGIFWGKF 143 (183)
T ss_dssp EEEH--HHHHHHHTTCCGGGG-----SCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEECS--------SEEEEEEC
T ss_pred EecH--HHHHHHHHhCCCCcc-----CCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEEC--------CEEEEEEe
Confidence 3222 111111111111111 1345677777788888888777665443 345555542 25677 77
Q ss_pred c
Q 009916 155 D 155 (522)
Q Consensus 155 ~ 155 (522)
.
T Consensus 144 ~ 144 (183)
T 2hiy_A 144 S 144 (183)
T ss_dssp C
T ss_pred C
Confidence 4
No 424
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.64 E-value=1.4e+02 Score=23.81 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHhc-cC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q 009916 12 GISWDTDEERLKEYFSR-YG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63 (522)
Q Consensus 12 nLP~~~teeeL~e~F~~-~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kA 63 (522)
-+..+++..+|++.+++ |+ +|..|..+..+. + .=-|+|.+....+|...
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dv 79 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEV 79 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHH
Confidence 46789999999999988 55 577777666432 1 22599999877766654
No 425
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=20.40 E-value=1.4e+02 Score=27.91 Aligned_cols=113 Identities=10% Similarity=0.075 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEec---CHHHHHHHH-----hccccc---CCeEEEEeeccC
Q 009916 14 SWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA---DPAVAERVI-----MDKHMI---DGRTVEAKKAVP 82 (522)
Q Consensus 14 P~~~teeeL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~---~~e~A~kAl-----~n~~~i---~Gr~I~V~~a~~ 82 (522)
..+..+.+|+++|+.++++....++.++. -+|-.=+.+. +.+++..++ .++..+ ++..+.|..+..
T Consensus 10 sl~f~~~~i~~vl~~la~~~g~n~vvd~~---V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~ 86 (241)
T 3ezj_A 10 TANFKDTDLKSFIETVGANLNKTIIMGPG---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSA 86 (241)
T ss_dssp CCEEEEEEHHHHHHHHHHHHTCEEEC------CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC--
T ss_pred EEEeCCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHH
Confidence 34455666777777777766677776653 3455445553 566666654 444432 577777766543
Q ss_pred CccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhc
Q 009916 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF 129 (522)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~f 129 (522)
...................+..+..+.+.+....--...|+.++..-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~t~vi~L~~~~a~~l~~~L~~l~~~~ 133 (241)
T 3ezj_A 87 AKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSA 133 (241)
T ss_dssp -----------------CCCEEEEEEECCSSCGGGTHHHHHHHHHHH
T ss_pred hhhcCCccccCCCCCCCCCceEEEEEEecccCHHHHHHHHHHHhCcC
Confidence 22111100000000001111233445555555444455677777665
No 426
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=20.27 E-value=1.8e+02 Score=23.14 Aligned_cols=23 Identities=9% Similarity=0.322 Sum_probs=20.1
Q ss_pred cceEEEEEecCHHHHHHHHHhcC
Q 009916 146 PRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 146 ~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
.+||.||+++..++...+++...
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCT
T ss_pred cCCEEEEEEecchhHHHHHHCCC
Confidence 78999999999999988886665
No 427
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=20.22 E-value=2.1e+02 Score=23.60 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=35.9
Q ss_pred ceeEecCCCCCCCHHHHHHHHhh-------cCCeeEEEEEecCCCCCcce---EEEEEecCHHHHHH
Q 009916 106 KKIFVGGLASTVTESDFKKYFDQ-------FGTITDVVVMYDHNTQRPRG---FGFITYDSEEAVDR 162 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~-------fG~V~~v~i~~d~~tg~~rG---~aFVeF~s~e~A~~ 162 (522)
+.|.+-.|...+++++++++.+. ...|+.+.+-++.. .+.++ .-.++|+++++.++
T Consensus 23 ~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 23 RHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 44566678889988877766654 34466666666544 33333 34678888887764
No 428
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=20.22 E-value=1.9e+02 Score=23.30 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=36.1
Q ss_pred ceeEecCCCCCCCHHHHHHHHh-------hcCCeeEEEEEecCCC---CCcce---EEEEEecCHHHHHH
Q 009916 106 KKIFVGGLASTVTESDFKKYFD-------QFGTITDVVVMYDHNT---QRPRG---FGFITYDSEEAVDR 162 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~-------~fG~V~~v~i~~d~~t---g~~rG---~aFVeF~s~e~A~~ 162 (522)
+.|.+-.|...+++++++++.+ +...|+.+.+-++... .+.++ .-.++|++.++.++
T Consensus 10 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (108)
T 1tr0_A 10 KHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQE 79 (108)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHH
Confidence 3455567888888887655554 3456777777666432 22333 34678899887763
No 429
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.12 E-value=2.9e+02 Score=21.95 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=38.5
Q ss_pred EecCCCCCCCHHHHHHHHhh-cC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhc
Q 009916 109 FVGGLASTVTESDFKKYFDQ-FG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (522)
Q Consensus 109 fVgnLp~~vteedL~~~F~~-fG-~V~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~ 167 (522)
++-..+..++..+|++.+++ |+ .|..|..+..+. +. --|+|++...++|.....++
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~--KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GE--KKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SC--EEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cc--eEEEEEcCCCCcHHHHHHhh
Confidence 34456788999999999987 55 367776665543 21 25999998877776655443
Done!