Query 009917
Match_columns 522
No_of_seqs 392 out of 3506
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 18:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 7.4E-79 1.6E-83 629.4 23.8 455 3-520 1-477 (531)
2 PLN02172 flavin-containing mon 100.0 3.5E-60 7.6E-65 484.8 37.7 365 3-498 10-405 (461)
3 KOG1399 Flavin-containing mono 100.0 7.2E-53 1.6E-57 421.8 28.1 392 1-520 4-410 (448)
4 COG2072 TrkA Predicted flavopr 100.0 1.2E-44 2.5E-49 369.1 32.4 391 2-445 7-414 (443)
5 PF13738 Pyr_redox_3: Pyridine 100.0 9.5E-33 2.1E-37 255.3 15.1 192 7-242 1-203 (203)
6 TIGR01292 TRX_reduct thioredox 100.0 1.8E-29 3.8E-34 248.2 26.9 285 4-442 1-297 (300)
7 PRK10262 thioredoxin reductase 100.0 1.3E-27 2.8E-32 236.8 26.5 270 3-423 6-290 (321)
8 PRK05249 soluble pyridine nucl 100.0 2.5E-27 5.4E-32 246.5 23.8 307 1-444 3-335 (461)
9 COG1252 Ndh NADH dehydrogenase 100.0 5.6E-28 1.2E-32 237.5 16.9 303 1-447 1-333 (405)
10 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.8E-27 6E-32 238.8 20.4 317 1-443 2-334 (454)
11 PRK15317 alkyl hydroperoxide r 100.0 1.5E-26 3.4E-31 242.6 25.8 175 3-240 211-385 (517)
12 PRK13512 coenzyme A disulfide 100.0 3.3E-27 7.2E-32 243.0 20.2 295 4-444 2-312 (438)
13 PRK06416 dihydrolipoamide dehy 100.0 7.9E-27 1.7E-31 242.6 23.1 305 3-445 4-335 (462)
14 TIGR01421 gluta_reduc_1 glutat 100.0 7.3E-27 1.6E-31 240.9 22.1 301 3-443 2-327 (450)
15 PLN02507 glutathione reductase 100.0 1.1E-26 2.4E-31 241.8 23.0 306 3-444 25-363 (499)
16 PRK06116 glutathione reductase 99.9 1.2E-26 2.7E-31 240.2 23.0 300 3-444 4-328 (450)
17 PRK08010 pyridine nucleotide-d 99.9 9.7E-27 2.1E-31 240.4 21.2 304 1-444 1-317 (441)
18 PF13434 K_oxygenase: L-lysine 99.9 2E-27 4.4E-32 234.0 14.1 226 3-268 2-251 (341)
19 TIGR01424 gluta_reduc_2 glutat 99.9 1.6E-26 3.4E-31 238.7 21.3 302 3-444 2-326 (446)
20 PRK14694 putative mercuric red 99.9 4.5E-26 9.7E-31 236.8 24.4 310 3-444 6-335 (468)
21 PTZ00318 NADH dehydrogenase-li 99.9 1.2E-26 2.5E-31 237.9 18.9 301 1-445 8-347 (424)
22 TIGR02053 MerA mercuric reduct 99.9 1.7E-26 3.8E-31 240.0 19.4 305 4-444 1-329 (463)
23 PRK07251 pyridine nucleotide-d 99.9 1E-25 2.2E-30 232.5 25.0 297 1-444 1-316 (438)
24 COG0492 TrxB Thioredoxin reduc 99.9 1.6E-25 3.6E-30 215.5 24.2 267 1-423 1-276 (305)
25 PRK06370 mercuric reductase; V 99.9 6.5E-26 1.4E-30 235.5 22.6 305 1-444 3-334 (463)
26 PRK07818 dihydrolipoamide dehy 99.9 9.3E-26 2E-30 234.4 23.5 318 1-444 2-336 (466)
27 TIGR03140 AhpF alkyl hydropero 99.9 1.2E-25 2.5E-30 235.7 23.9 175 3-240 212-386 (515)
28 PRK06467 dihydrolipoamide dehy 99.9 1.3E-25 2.8E-30 233.0 23.4 308 1-444 1-337 (471)
29 PRK09564 coenzyme A disulfide 99.9 1.4E-25 2.9E-30 232.5 22.8 300 4-445 1-318 (444)
30 PRK04965 NADH:flavorubredoxin 99.9 1.3E-25 2.8E-30 227.4 22.0 290 1-445 1-303 (377)
31 PRK06292 dihydrolipoamide dehy 99.9 9.5E-26 2.1E-30 234.5 21.5 311 1-444 1-331 (460)
32 PRK14727 putative mercuric red 99.9 1.2E-25 2.5E-30 234.0 20.3 313 3-444 16-346 (479)
33 PTZ00052 thioredoxin reductase 99.9 7.4E-26 1.6E-30 235.8 18.7 313 3-444 5-341 (499)
34 PRK06115 dihydrolipoamide dehy 99.9 2.9E-25 6.3E-30 230.2 22.9 308 1-445 1-339 (466)
35 PRK13748 putative mercuric red 99.9 3E-25 6.5E-30 236.4 23.1 310 3-444 98-428 (561)
36 TIGR03143 AhpF_homolog putativ 99.9 7.6E-25 1.7E-29 231.2 25.2 176 1-240 1-177 (555)
37 PRK05976 dihydrolipoamide dehy 99.9 5E-25 1.1E-29 229.3 23.0 315 1-444 1-343 (472)
38 TIGR01423 trypano_reduc trypan 99.9 1.4E-25 3.1E-30 231.9 18.7 321 3-444 3-351 (486)
39 PRK09754 phenylpropionate diox 99.9 1.5E-25 3.3E-30 228.0 18.1 294 1-445 1-310 (396)
40 PLN02546 glutathione reductase 99.9 7.9E-26 1.7E-30 236.3 15.6 301 3-444 79-413 (558)
41 PRK07846 mycothione reductase; 99.9 4.6E-25 1E-29 227.4 20.7 310 3-444 1-325 (451)
42 PRK14989 nitrite reductase sub 99.9 4.3E-25 9.2E-30 240.7 21.1 295 1-445 1-311 (847)
43 PTZ00058 glutathione reductase 99.9 3.7E-25 8E-30 231.1 19.5 315 3-444 48-432 (561)
44 TIGR01350 lipoamide_DH dihydro 99.9 1.3E-24 2.7E-29 226.3 23.3 306 3-445 1-333 (461)
45 PRK07845 flavoprotein disulfid 99.9 2.5E-24 5.4E-29 223.3 23.7 311 4-444 2-337 (466)
46 TIGR01438 TGR thioredoxin and 99.9 3.8E-24 8.3E-29 221.9 23.7 316 3-444 2-344 (484)
47 PRK09853 putative selenate red 99.9 2.3E-24 4.9E-29 233.3 22.2 298 3-446 539-842 (1019)
48 PRK06912 acoL dihydrolipoamide 99.9 4.9E-24 1.1E-28 220.9 22.7 309 5-444 2-330 (458)
49 TIGR02374 nitri_red_nirB nitri 99.9 2.1E-24 4.6E-29 235.8 20.4 289 6-445 1-302 (785)
50 PRK06327 dihydrolipoamide dehy 99.9 8.6E-24 1.9E-28 219.9 23.8 313 1-445 1-348 (475)
51 TIGR03169 Nterm_to_SelD pyridi 99.9 2.5E-24 5.3E-29 217.3 17.9 289 5-443 1-308 (364)
52 PTZ00153 lipoamide dehydrogena 99.9 4.6E-24 9.9E-29 225.7 18.5 319 3-444 116-495 (659)
53 PRK12831 putative oxidoreducta 99.9 9.2E-24 2E-28 217.9 19.4 169 3-240 140-315 (464)
54 TIGR03452 mycothione_red mycot 99.9 1.7E-23 3.8E-28 215.9 21.0 309 3-444 2-328 (452)
55 TIGR01316 gltA glutamate synth 99.9 1.4E-23 3E-28 216.3 19.9 166 3-240 133-306 (449)
56 PRK11749 dihydropyrimidine deh 99.9 3.9E-23 8.5E-28 214.1 20.2 170 3-243 140-311 (457)
57 TIGR03315 Se_ygfK putative sel 99.9 1.3E-22 2.8E-27 220.9 22.5 300 3-446 537-840 (1012)
58 KOG0405 Pyridine nucleotide-di 99.9 1.6E-22 3.4E-27 187.7 19.6 316 3-443 20-349 (478)
59 PRK12779 putative bifunctional 99.9 1.4E-22 3E-27 223.2 21.3 167 3-240 306-481 (944)
60 COG3486 IucD Lysine/ornithine 99.9 5.3E-22 1.2E-26 189.5 20.9 201 2-246 4-230 (436)
61 PRK12778 putative bifunctional 99.9 3.1E-22 6.6E-27 219.0 19.6 168 3-240 431-605 (752)
62 PRK12814 putative NADPH-depend 99.9 5.2E-22 1.1E-26 212.9 20.0 170 3-244 193-362 (652)
63 PRK12770 putative glutamate sy 99.9 3.7E-21 8.1E-26 192.7 21.1 180 4-240 19-207 (352)
64 PRK12775 putative trifunctiona 99.9 4.2E-21 9.1E-26 213.4 20.4 168 4-240 431-606 (1006)
65 KOG2495 NADH-dehydrogenase (ub 99.9 3.1E-21 6.7E-26 184.5 16.0 308 2-446 54-397 (491)
66 KOG1335 Dihydrolipoamide dehyd 99.9 4E-21 8.8E-26 180.6 15.5 320 3-445 39-378 (506)
67 COG4529 Uncharacterized protei 99.9 9.5E-20 2.1E-24 179.2 25.7 384 4-442 2-459 (474)
68 PRK12810 gltD glutamate syntha 99.9 1.4E-20 3.1E-25 195.3 21.0 163 4-237 144-313 (471)
69 TIGR03385 CoA_CoA_reduc CoA-di 99.9 9.8E-21 2.1E-25 195.0 19.6 284 17-444 1-304 (427)
70 PRK12769 putative oxidoreducta 99.9 2.4E-20 5.1E-25 201.1 22.6 171 3-244 327-507 (654)
71 TIGR01318 gltD_gamma_fam gluta 99.9 3.6E-20 7.8E-25 191.6 20.8 170 4-244 142-321 (467)
72 KOG1336 Monodehydroascorbate/f 99.8 2.1E-20 4.6E-25 182.3 17.0 269 3-423 74-351 (478)
73 TIGR01372 soxA sarcosine oxida 99.8 2.9E-19 6.2E-24 200.0 23.6 286 3-441 163-467 (985)
74 KOG0404 Thioredoxin reductase 99.8 4E-19 8.6E-24 155.3 18.9 183 4-240 9-191 (322)
75 PRK12809 putative oxidoreducta 99.8 3E-19 6.5E-24 191.7 20.1 167 3-240 310-486 (639)
76 PRK12771 putative glutamate sy 99.8 3.5E-19 7.5E-24 189.2 18.9 164 4-240 138-302 (564)
77 COG1251 NirB NAD(P)H-nitrite r 99.8 4.7E-19 1E-23 180.7 17.6 294 1-445 1-307 (793)
78 TIGR01317 GOGAT_sm_gam glutama 99.8 2.2E-18 4.8E-23 179.1 23.0 166 4-240 144-318 (485)
79 PRK09897 hypothetical protein; 99.8 9.9E-18 2.1E-22 173.5 27.4 195 4-240 2-246 (534)
80 PRK13984 putative oxidoreducta 99.8 8.6E-19 1.9E-23 187.9 19.3 165 3-236 283-454 (604)
81 PLN02852 ferredoxin-NADP+ redu 99.8 1.8E-17 3.9E-22 169.6 22.6 170 3-240 26-221 (491)
82 COG3634 AhpF Alkyl hydroperoxi 99.8 7.1E-17 1.5E-21 150.3 19.0 175 3-237 211-385 (520)
83 KOG4716 Thioredoxin reductase 99.8 1.7E-16 3.7E-21 147.2 21.2 198 3-239 19-231 (503)
84 KOG1800 Ferredoxin/adrenodoxin 99.6 3.7E-14 7.9E-19 134.2 16.9 170 3-240 20-215 (468)
85 PRK06567 putative bifunctional 99.6 1.4E-14 3.1E-19 155.6 13.6 38 3-40 383-420 (1028)
86 KOG0399 Glutamate synthase [Am 99.6 1.1E-13 2.3E-18 145.4 18.0 164 4-236 1786-1955(2142)
87 COG0493 GltD NADPH-dependent g 99.5 4.1E-14 9E-19 143.5 12.7 163 4-237 124-294 (457)
88 PTZ00188 adrenodoxin reductase 99.5 4.5E-14 9.7E-19 142.2 12.7 42 3-44 39-81 (506)
89 COG0446 HcaD Uncharacterized N 99.5 4.4E-13 9.5E-18 137.9 18.9 289 6-444 1-310 (415)
90 PF13454 NAD_binding_9: FAD-NA 99.4 3.5E-12 7.6E-17 111.9 13.2 127 7-160 1-155 (156)
91 COG2081 Predicted flavoprotein 99.4 1.7E-12 3.6E-17 125.3 11.2 137 1-167 1-171 (408)
92 COG1148 HdrA Heterodisulfide r 99.3 9.7E-11 2.1E-15 114.5 16.4 40 4-43 125-164 (622)
93 PF03486 HI0933_like: HI0933-l 99.2 3.1E-11 6.7E-16 121.7 10.3 134 4-166 1-169 (409)
94 PF07992 Pyr_redox_2: Pyridine 99.2 5.5E-12 1.2E-16 116.1 3.6 153 5-210 1-159 (201)
95 KOG1346 Programmed cell death 99.2 1.7E-10 3.6E-15 110.6 12.4 250 4-382 179-455 (659)
96 PRK06847 hypothetical protein; 99.1 7.7E-10 1.7E-14 112.3 15.4 132 1-162 1-163 (375)
97 KOG2755 Oxidoreductase [Genera 99.1 1.4E-09 3E-14 98.4 14.8 164 5-247 1-172 (334)
98 PRK04176 ribulose-1,5-biphosph 99.1 3.3E-10 7.2E-15 107.6 11.3 138 3-162 25-173 (257)
99 TIGR02032 GG-red-SF geranylger 99.1 6.4E-10 1.4E-14 108.7 13.7 130 4-162 1-148 (295)
100 COG3380 Predicted NAD/FAD-depe 99.1 2E-10 4.3E-15 104.5 9.1 123 5-159 3-157 (331)
101 TIGR00292 thiazole biosynthesi 99.1 3.7E-10 8.1E-15 106.9 10.7 138 3-161 21-169 (254)
102 PRK06834 hypothetical protein; 99.1 9.4E-10 2E-14 114.8 14.5 132 1-162 1-156 (488)
103 PF01494 FAD_binding_3: FAD bi 99.1 5.1E-10 1.1E-14 112.4 11.6 132 4-162 2-172 (356)
104 PRK08013 oxidoreductase; Provi 99.1 1E-09 2.2E-14 112.3 13.7 133 1-162 1-168 (400)
105 TIGR01790 carotene-cycl lycope 99.1 1.9E-09 4.2E-14 109.9 14.4 129 5-162 1-141 (388)
106 PRK07494 2-octaprenyl-6-methox 99.1 1.4E-09 3E-14 110.9 13.3 132 2-162 6-167 (388)
107 TIGR02023 BchP-ChlP geranylger 99.1 3E-09 6.4E-14 108.3 15.5 130 4-162 1-155 (388)
108 PRK08773 2-octaprenyl-3-methyl 99.1 1.8E-09 3.9E-14 110.2 13.7 132 2-162 5-169 (392)
109 PRK06183 mhpA 3-(3-hydroxyphen 99.1 3.5E-09 7.5E-14 112.5 16.2 134 3-162 10-174 (538)
110 PRK06184 hypothetical protein; 99.1 3.4E-09 7.4E-14 111.6 15.8 136 1-162 1-168 (502)
111 PRK08244 hypothetical protein; 99.0 3.2E-09 6.8E-14 111.7 14.8 133 4-162 3-159 (493)
112 COG0644 FixC Dehydrogenases (f 99.0 2.9E-09 6.2E-14 108.6 13.7 133 1-162 1-152 (396)
113 PRK07364 2-octaprenyl-6-methox 99.0 2.6E-09 5.7E-14 109.9 13.5 134 3-162 18-181 (415)
114 PRK09126 hypothetical protein; 99.0 4E-09 8.8E-14 107.7 14.1 133 1-162 1-167 (392)
115 PRK10157 putative oxidoreducta 99.0 3.8E-09 8.3E-14 108.6 13.8 131 3-162 5-164 (428)
116 PLN02463 lycopene beta cyclase 99.0 5.8E-09 1.3E-13 106.9 14.9 130 3-162 28-169 (447)
117 PRK06753 hypothetical protein; 99.0 3.4E-09 7.4E-14 107.4 13.1 127 4-162 1-152 (373)
118 COG1635 THI4 Ribulose 1,5-bisp 99.0 3.2E-09 6.8E-14 94.0 9.9 142 4-161 31-177 (262)
119 TIGR02028 ChlP geranylgeranyl 99.0 1.2E-08 2.6E-13 104.0 15.3 136 4-162 1-160 (398)
120 PRK07236 hypothetical protein; 99.0 4.1E-09 9E-14 107.3 11.7 131 1-162 4-154 (386)
121 PRK06126 hypothetical protein; 99.0 1.5E-08 3.3E-13 107.9 16.2 136 3-162 7-188 (545)
122 PRK08163 salicylate hydroxylas 99.0 4.7E-09 1E-13 107.3 11.9 131 3-162 4-166 (396)
123 PRK08849 2-octaprenyl-3-methyl 99.0 8.2E-09 1.8E-13 105.0 13.5 133 1-162 1-167 (384)
124 PRK10015 oxidoreductase; Provi 99.0 1.1E-08 2.4E-13 105.2 14.4 131 3-162 5-164 (429)
125 PRK05732 2-octaprenyl-6-methox 98.9 7.6E-09 1.6E-13 105.8 13.0 133 1-162 1-169 (395)
126 TIGR01988 Ubi-OHases Ubiquinon 98.9 7.2E-09 1.6E-13 105.5 12.8 129 5-162 1-163 (385)
127 PRK08243 4-hydroxybenzoate 3-m 98.9 1.6E-08 3.5E-13 103.2 15.1 132 3-162 2-163 (392)
128 PRK07190 hypothetical protein; 98.9 1.3E-08 2.8E-13 106.2 14.5 131 3-162 5-165 (487)
129 PRK08850 2-octaprenyl-6-methox 98.9 9.8E-09 2.1E-13 105.2 13.3 133 1-162 2-168 (405)
130 PRK07333 2-octaprenyl-6-methox 98.9 1E-08 2.2E-13 105.2 13.3 130 4-162 2-167 (403)
131 PRK08132 FAD-dependent oxidore 98.9 2.5E-08 5.3E-13 106.3 16.7 134 3-162 23-185 (547)
132 PRK05714 2-octaprenyl-3-methyl 98.9 9.9E-09 2.2E-13 105.2 13.0 130 4-162 3-168 (405)
133 PRK07588 hypothetical protein; 98.9 9.2E-09 2E-13 105.0 12.5 129 4-162 1-158 (391)
134 PRK07045 putative monooxygenas 98.9 2.3E-08 5E-13 101.9 14.8 133 3-162 5-165 (388)
135 PRK08020 ubiF 2-octaprenyl-3-m 98.9 1.3E-08 2.9E-13 103.8 12.7 131 3-162 5-169 (391)
136 PRK06185 hypothetical protein; 98.9 1.7E-08 3.7E-13 103.6 13.5 134 3-162 6-169 (407)
137 PRK07608 ubiquinone biosynthes 98.9 2.2E-08 4.9E-13 102.0 13.8 130 3-162 5-167 (388)
138 PRK07538 hypothetical protein; 98.9 3.2E-08 6.9E-13 101.7 15.0 135 4-162 1-165 (413)
139 PF13450 NAD_binding_8: NAD(P) 98.9 4.5E-09 9.7E-14 77.7 5.9 51 8-58 1-52 (68)
140 COG0654 UbiH 2-polyprenyl-6-me 98.9 2.5E-08 5.5E-13 101.4 13.5 131 3-162 2-162 (387)
141 PF00070 Pyr_redox: Pyridine n 98.9 4E-08 8.8E-13 75.5 11.5 70 5-109 1-70 (80)
142 PF05834 Lycopene_cycl: Lycope 98.9 3.8E-08 8.1E-13 99.5 14.0 144 5-185 1-159 (374)
143 PRK11445 putative oxidoreducta 98.8 3.9E-08 8.5E-13 98.6 13.9 130 4-162 2-157 (351)
144 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 5.1E-08 1.1E-12 99.2 14.7 134 4-162 3-163 (390)
145 TIGR01984 UbiH 2-polyprenyl-6- 98.8 2.4E-08 5.2E-13 101.6 12.3 129 5-162 1-162 (382)
146 PLN02697 lycopene epsilon cycl 98.8 3.2E-08 6.8E-13 103.2 13.0 128 3-162 108-248 (529)
147 TIGR00275 flavoprotein, HI0933 98.8 3.2E-08 7E-13 100.8 12.6 125 7-162 1-160 (400)
148 PLN00093 geranylgeranyl diphos 98.8 8.6E-08 1.9E-12 98.8 14.7 134 3-162 39-199 (450)
149 TIGR03219 salicylate_mono sali 98.8 4.4E-08 9.6E-13 100.7 12.5 128 4-162 1-159 (414)
150 PLN02661 Putative thiazole syn 98.8 3.4E-08 7.4E-13 96.2 10.9 140 3-161 92-243 (357)
151 TIGR01989 COQ6 Ubiquinone bios 98.8 6.6E-08 1.4E-12 100.0 13.2 135 4-162 1-183 (437)
152 PF01946 Thi4: Thi4 family; PD 98.8 8.6E-09 1.9E-13 92.0 5.5 105 3-109 17-126 (230)
153 PRK06617 2-octaprenyl-6-methox 98.8 6.8E-08 1.5E-12 97.8 13.0 126 4-162 2-160 (374)
154 PRK06475 salicylate hydroxylas 98.8 8.8E-08 1.9E-12 98.0 13.5 133 4-162 3-167 (400)
155 PF01266 DAO: FAD dependent ox 98.8 5.3E-08 1.1E-12 97.9 11.8 58 75-162 145-203 (358)
156 PRK05868 hypothetical protein; 98.7 1.8E-07 3.9E-12 94.6 14.8 35 4-38 2-36 (372)
157 TIGR01789 lycopene_cycl lycope 98.7 1.1E-07 2.3E-12 95.8 12.6 140 5-186 1-156 (370)
158 TIGR01813 flavo_cyto_c flavocy 98.7 3.7E-07 8.1E-12 94.6 16.5 134 5-162 1-192 (439)
159 PRK05192 tRNA uridine 5-carbox 98.7 9.3E-08 2E-12 99.9 11.8 40 1-40 2-42 (618)
160 PF12831 FAD_oxidored: FAD dep 98.7 1.4E-08 3.1E-13 104.4 5.3 132 5-161 1-149 (428)
161 PRK08294 phenol 2-monooxygenas 98.7 4.6E-07 1E-11 97.5 16.9 141 3-162 32-210 (634)
162 PRK12266 glpD glycerol-3-phosp 98.7 2.6E-07 5.6E-12 97.2 14.5 38 3-40 6-43 (508)
163 PRK06996 hypothetical protein; 98.7 2E-07 4.4E-12 95.2 13.3 130 3-160 11-172 (398)
164 COG1249 Lpd Pyruvate/2-oxoglut 98.7 3.3E-07 7.2E-12 93.5 14.4 105 3-170 173-277 (454)
165 KOG1335 Dihydrolipoamide dehyd 98.7 3.1E-07 6.7E-12 87.9 12.9 149 3-221 211-362 (506)
166 PRK05976 dihydrolipoamide dehy 98.7 8.7E-07 1.9E-11 92.6 17.3 104 4-168 181-284 (472)
167 PF00890 FAD_binding_2: FAD bi 98.7 4.4E-07 9.5E-12 93.5 14.7 135 5-162 1-203 (417)
168 PRK11259 solA N-methyltryptoph 98.6 3.6E-07 7.9E-12 92.7 13.8 37 1-37 1-37 (376)
169 PRK08274 tricarballylate dehyd 98.6 4.5E-07 9.7E-12 94.7 14.7 39 2-40 3-43 (466)
170 PRK11728 hydroxyglutarate oxid 98.6 2.1E-07 4.6E-12 95.0 11.5 38 1-39 1-40 (393)
171 TIGR01350 lipoamide_DH dihydro 98.6 1E-06 2.2E-11 92.0 16.3 102 4-168 171-272 (461)
172 PRK06481 fumarate reductase fl 98.6 8.9E-07 1.9E-11 93.1 15.5 39 3-41 61-99 (506)
173 PRK12409 D-amino acid dehydrog 98.6 7.2E-07 1.6E-11 91.6 14.6 35 4-38 2-36 (410)
174 COG0579 Predicted dehydrogenas 98.6 9.1E-07 2E-11 88.8 14.2 40 1-40 1-42 (429)
175 PRK06416 dihydrolipoamide dehy 98.6 2.2E-06 4.8E-11 89.4 17.7 103 4-168 173-275 (462)
176 PRK13369 glycerol-3-phosphate 98.6 8.7E-07 1.9E-11 93.2 14.5 38 3-40 6-43 (502)
177 TIGR01377 soxA_mon sarcosine o 98.6 7.8E-07 1.7E-11 90.4 13.8 34 4-37 1-34 (380)
178 PRK04965 NADH:flavorubredoxin 98.6 7.1E-07 1.5E-11 90.5 12.7 97 4-161 142-238 (377)
179 PRK11101 glpA sn-glycerol-3-ph 98.5 1.1E-06 2.3E-11 93.3 14.0 35 3-37 6-40 (546)
180 PRK01747 mnmC bifunctional tRN 98.5 1.5E-06 3.3E-11 94.6 15.4 35 4-38 261-295 (662)
181 PRK07121 hypothetical protein; 98.5 1.6E-06 3.4E-11 91.2 14.8 39 3-41 20-58 (492)
182 PRK06327 dihydrolipoamide dehy 98.5 3.7E-06 8E-11 87.9 17.4 104 4-168 184-287 (475)
183 PRK07818 dihydrolipoamide dehy 98.5 3.6E-06 7.9E-11 87.8 17.0 104 4-168 173-276 (466)
184 PRK06912 acoL dihydrolipoamide 98.5 3.2E-06 6.9E-11 88.0 16.3 101 4-168 171-271 (458)
185 PRK09754 phenylpropionate diox 98.5 1E-06 2.2E-11 90.0 12.1 96 4-161 145-240 (396)
186 TIGR02053 MerA mercuric reduct 98.5 1.9E-06 4.1E-11 89.9 14.4 103 4-168 167-269 (463)
187 PRK13977 myosin-cross-reactive 98.5 2.2E-06 4.8E-11 88.8 14.3 42 2-43 21-66 (576)
188 PF01134 GIDA: Glucose inhibit 98.5 6.4E-07 1.4E-11 88.8 9.9 126 5-161 1-151 (392)
189 PRK06115 dihydrolipoamide dehy 98.5 2.3E-06 4.9E-11 89.2 14.6 106 3-168 174-279 (466)
190 PRK07251 pyridine nucleotide-d 98.5 1.9E-06 4.1E-11 89.3 13.7 99 4-168 158-256 (438)
191 PRK07208 hypothetical protein; 98.5 3.5E-07 7.5E-12 96.0 8.3 44 1-44 2-45 (479)
192 KOG0029 Amine oxidase [Seconda 98.5 1.5E-07 3.3E-12 97.2 5.2 43 2-44 14-56 (501)
193 PRK05945 sdhA succinate dehydr 98.5 1.6E-06 3.5E-11 92.6 13.1 40 1-40 1-42 (575)
194 COG1252 Ndh NADH dehydrogenase 98.4 1.6E-06 3.4E-11 86.4 11.7 93 4-161 156-261 (405)
195 TIGR01812 sdhA_frdA_Gneg succi 98.4 3.1E-06 6.7E-11 90.5 14.8 36 5-40 1-36 (566)
196 PRK06370 mercuric reductase; V 98.4 6E-06 1.3E-10 86.2 16.5 103 4-168 172-274 (463)
197 PRK06116 glutathione reductase 98.4 2.6E-06 5.5E-11 88.6 13.6 102 3-168 167-268 (450)
198 PLN02927 antheraxanthin epoxid 98.4 2.1E-06 4.5E-11 91.4 13.0 34 3-36 81-114 (668)
199 COG1233 Phytoene dehydrogenase 98.4 2.9E-07 6.3E-12 96.1 6.5 55 1-55 1-56 (487)
200 PLN02985 squalene monooxygenas 98.4 5.1E-06 1.1E-10 87.2 15.8 34 3-36 43-76 (514)
201 COG0578 GlpA Glycerol-3-phosph 98.4 2.8E-06 6.2E-11 87.1 13.2 42 2-43 11-52 (532)
202 PRK07803 sdhA succinate dehydr 98.4 3.4E-06 7.4E-11 90.8 14.5 36 4-39 9-44 (626)
203 PRK05329 anaerobic glycerol-3- 98.4 1.9E-06 4.1E-11 87.6 11.7 35 1-36 1-35 (422)
204 PRK05249 soluble pyridine nucl 98.4 2.9E-06 6.2E-11 88.6 13.5 101 3-168 175-275 (461)
205 PRK08641 sdhA succinate dehydr 98.4 6.4E-06 1.4E-10 88.1 16.3 40 1-40 1-40 (589)
206 PF06039 Mqo: Malate:quinone o 98.4 2.8E-06 6.2E-11 84.5 12.3 50 90-162 195-244 (488)
207 PF00070 Pyr_redox: Pyridine n 98.4 1.9E-07 4E-12 71.8 3.3 38 205-246 1-38 (80)
208 PRK06452 sdhA succinate dehydr 98.4 3.6E-06 7.8E-11 89.6 14.1 38 3-40 5-42 (566)
209 TIGR01320 mal_quin_oxido malat 98.4 4.6E-06 1E-10 86.8 14.4 34 4-37 1-36 (483)
210 PRK07057 sdhA succinate dehydr 98.4 5.6E-06 1.2E-10 88.6 15.2 37 4-40 13-49 (591)
211 PRK07573 sdhA succinate dehydr 98.4 4.1E-06 8.8E-11 90.3 14.2 37 3-39 35-71 (640)
212 PRK13339 malate:quinone oxidor 98.4 5.1E-06 1.1E-10 86.1 14.3 37 3-39 6-44 (497)
213 PRK06263 sdhA succinate dehydr 98.4 4.3E-06 9.3E-11 88.8 14.0 134 4-161 8-196 (543)
214 TIGR01424 gluta_reduc_2 glutat 98.4 4.2E-06 9.1E-11 86.8 13.6 100 4-168 167-266 (446)
215 TIGR01421 gluta_reduc_1 glutat 98.4 4.9E-06 1.1E-10 86.3 13.9 102 4-168 167-268 (450)
216 PRK07804 L-aspartate oxidase; 98.4 7.2E-06 1.6E-10 86.9 15.3 38 3-40 16-53 (541)
217 TIGR00551 nadB L-aspartate oxi 98.4 2.8E-06 6.2E-11 89.0 12.1 37 3-40 2-38 (488)
218 PTZ00383 malate:quinone oxidor 98.4 3.9E-06 8.5E-11 87.2 12.9 36 3-38 45-82 (497)
219 TIGR03364 HpnW_proposed FAD de 98.4 4.7E-06 1E-10 84.2 13.2 34 4-37 1-34 (365)
220 PRK08275 putative oxidoreducta 98.4 2.4E-06 5.2E-11 90.9 11.3 133 4-161 10-199 (554)
221 TIGR00136 gidA glucose-inhibit 98.4 3.6E-06 7.9E-11 88.0 12.2 130 4-161 1-153 (617)
222 PTZ00139 Succinate dehydrogena 98.4 4.6E-06 1E-10 89.6 13.4 38 3-40 29-66 (617)
223 PRK06854 adenylylsulfate reduc 98.3 4E-06 8.7E-11 89.9 12.6 35 3-37 11-47 (608)
224 PLN02464 glycerol-3-phosphate 98.3 6.2E-06 1.3E-10 88.7 14.0 38 3-40 71-108 (627)
225 PRK05257 malate:quinone oxidor 98.3 6.8E-06 1.5E-10 85.7 13.7 37 2-38 4-42 (494)
226 PRK08401 L-aspartate oxidase; 98.3 5.6E-06 1.2E-10 86.2 13.1 34 4-37 2-35 (466)
227 PRK06467 dihydrolipoamide dehy 98.3 7.7E-06 1.7E-10 85.4 14.1 103 4-168 175-277 (471)
228 PLN00128 Succinate dehydrogena 98.3 6.5E-06 1.4E-10 88.5 13.7 37 4-40 51-87 (635)
229 TIGR03385 CoA_CoA_reduc CoA-di 98.3 5.3E-06 1.1E-10 85.7 12.7 95 4-161 138-232 (427)
230 PRK07846 mycothione reductase; 98.3 6.9E-06 1.5E-10 85.2 13.4 100 3-168 166-265 (451)
231 PRK07845 flavoprotein disulfid 98.3 7E-06 1.5E-10 85.6 13.5 100 4-168 178-277 (466)
232 KOG2404 Fumarate reductase, fl 98.3 4.6E-06 1E-10 78.2 10.7 41 4-44 10-50 (477)
233 PLN02507 glutathione reductase 98.3 7.1E-06 1.5E-10 86.1 13.5 100 4-168 204-303 (499)
234 PRK06175 L-aspartate oxidase; 98.3 8E-06 1.7E-10 84.1 13.6 37 3-40 4-40 (433)
235 PRK13512 coenzyme A disulfide 98.3 4E-06 8.6E-11 86.8 11.3 96 4-168 149-244 (438)
236 PRK08958 sdhA succinate dehydr 98.3 6.3E-06 1.4E-10 88.1 13.1 38 3-40 7-44 (588)
237 PRK09078 sdhA succinate dehydr 98.3 1.3E-05 2.8E-10 86.0 15.2 37 4-40 13-49 (598)
238 PRK12845 3-ketosteroid-delta-1 98.3 9.8E-06 2.1E-10 86.0 14.0 41 3-44 16-56 (564)
239 PRK00711 D-amino acid dehydrog 98.3 1.5E-05 3.2E-10 82.1 15.0 34 5-38 2-35 (416)
240 PRK06069 sdhA succinate dehydr 98.3 1.1E-05 2.4E-10 86.4 14.2 37 4-40 6-45 (577)
241 PRK08010 pyridine nucleotide-d 98.3 1.1E-05 2.4E-10 83.7 13.7 99 4-168 159-257 (441)
242 KOG2820 FAD-dependent oxidored 98.3 9.8E-06 2.1E-10 76.7 11.8 139 4-169 8-218 (399)
243 PRK08626 fumarate reductase fl 98.3 1.2E-05 2.7E-10 86.8 14.5 37 3-39 5-41 (657)
244 KOG3851 Sulfide:quinone oxidor 98.3 1.9E-05 4.1E-10 74.1 13.5 35 3-37 39-75 (446)
245 PRK09564 coenzyme A disulfide 98.3 7.5E-06 1.6E-10 85.1 12.5 96 4-161 150-245 (444)
246 PTZ00058 glutathione reductase 98.3 1.1E-05 2.4E-10 85.2 13.6 103 3-168 237-339 (561)
247 TIGR03329 Phn_aa_oxid putative 98.3 5.5E-06 1.2E-10 86.3 11.1 33 4-36 25-59 (460)
248 PRK12842 putative succinate de 98.3 1.6E-05 3.4E-10 85.1 14.7 39 3-41 9-47 (574)
249 PLN02815 L-aspartate oxidase 98.3 1.3E-05 2.8E-10 85.4 13.9 37 3-40 29-65 (594)
250 PRK08071 L-aspartate oxidase; 98.3 1.4E-05 3E-10 84.2 13.9 40 1-41 1-40 (510)
251 TIGR01811 sdhA_Bsu succinate d 98.2 1.7E-05 3.6E-10 85.1 14.6 34 6-39 1-34 (603)
252 PRK12835 3-ketosteroid-delta-1 98.2 1.8E-05 4E-10 84.5 14.8 39 3-41 11-49 (584)
253 TIGR03452 mycothione_red mycot 98.2 1.2E-05 2.7E-10 83.4 13.2 99 4-168 170-268 (452)
254 TIGR01423 trypano_reduc trypan 98.2 1.4E-05 3E-10 83.4 13.6 102 3-168 187-291 (486)
255 PRK14727 putative mercuric red 98.2 1.4E-05 3E-10 83.7 13.4 98 4-168 189-286 (479)
256 PRK06134 putative FAD-binding 98.2 1.4E-05 3E-10 85.5 13.6 41 3-43 12-52 (581)
257 PRK08255 salicylyl-CoA 5-hydro 98.2 3.8E-06 8.2E-11 92.7 9.0 99 4-105 1-123 (765)
258 PRK12839 hypothetical protein; 98.2 2.6E-05 5.6E-10 83.0 15.1 41 3-43 8-48 (572)
259 TIGR01438 TGR thioredoxin and 98.2 2.4E-05 5.1E-10 81.8 14.1 102 4-168 181-282 (484)
260 PRK08205 sdhA succinate dehydr 98.2 1.8E-05 3.9E-10 84.7 13.4 36 4-40 6-41 (583)
261 KOG2415 Electron transfer flav 98.2 1E-05 2.3E-10 78.4 10.3 105 3-109 76-213 (621)
262 PRK14694 putative mercuric red 98.2 2.2E-05 4.8E-10 82.0 13.7 99 3-168 178-276 (468)
263 PTZ00367 squalene epoxidase; P 98.2 1.2E-05 2.7E-10 84.9 11.8 34 3-36 33-66 (567)
264 KOG2614 Kynurenine 3-monooxyge 98.2 1.2E-05 2.7E-10 78.5 10.8 36 3-38 2-37 (420)
265 TIGR01373 soxB sarcosine oxida 98.2 2.2E-05 4.9E-10 80.5 13.5 34 3-36 30-65 (407)
266 PRK11883 protoporphyrinogen ox 98.2 1.9E-06 4.2E-11 89.7 5.5 41 4-44 1-43 (451)
267 COG0446 HcaD Uncharacterized N 98.2 1.6E-05 3.4E-10 81.7 12.1 97 4-161 137-236 (415)
268 PRK06292 dihydrolipoamide dehy 98.2 2.6E-05 5.6E-10 81.5 13.4 102 4-168 170-271 (460)
269 TIGR02374 nitri_red_nirB nitri 98.2 1.4E-05 3E-10 88.5 11.9 97 4-161 141-237 (785)
270 PRK07843 3-ketosteroid-delta-1 98.1 1.7E-05 3.7E-10 84.4 12.1 39 3-41 7-45 (557)
271 PRK14989 nitrite reductase sub 98.1 1.7E-05 3.7E-10 87.8 12.4 99 4-161 146-244 (847)
272 PRK12844 3-ketosteroid-delta-1 98.1 3.1E-05 6.8E-10 82.4 14.0 40 3-42 6-45 (557)
273 PRK13748 putative mercuric red 98.1 2.6E-05 5.6E-10 83.6 13.1 99 3-168 270-368 (561)
274 PRK09231 fumarate reductase fl 98.1 3.9E-05 8.5E-10 82.0 14.3 38 3-40 4-43 (582)
275 PRK12843 putative FAD-binding 98.1 4.8E-05 1E-09 81.4 14.7 41 3-43 16-56 (578)
276 KOG1298 Squalene monooxygenase 98.1 3.9E-05 8.5E-10 73.9 12.3 32 4-35 46-77 (509)
277 PTZ00318 NADH dehydrogenase-li 98.1 5.3E-05 1.1E-09 78.1 14.5 92 4-161 174-279 (424)
278 PRK12837 3-ketosteroid-delta-1 98.1 5.5E-05 1.2E-09 79.8 14.9 37 3-40 7-43 (513)
279 PRK07233 hypothetical protein; 98.1 4.2E-06 9.2E-11 86.6 6.4 40 5-44 1-40 (434)
280 PTZ00052 thioredoxin reductase 98.1 3.6E-05 7.8E-10 80.9 13.4 99 4-168 183-281 (499)
281 PTZ00153 lipoamide dehydrogena 98.1 4.1E-05 8.8E-10 82.3 13.9 108 4-169 313-431 (659)
282 TIGR03140 AhpF alkyl hydropero 98.1 3.2E-05 6.8E-10 81.7 12.6 100 4-168 353-453 (515)
283 PRK10262 thioredoxin reductase 98.1 4E-05 8.6E-10 76.0 12.6 100 4-161 147-247 (321)
284 TIGR01176 fum_red_Fp fumarate 98.1 6.9E-05 1.5E-09 80.0 15.1 38 3-40 3-42 (580)
285 PLN02268 probable polyamine ox 98.1 3.6E-06 7.7E-11 87.2 5.1 41 4-44 1-41 (435)
286 PRK07395 L-aspartate oxidase; 98.1 2.6E-05 5.7E-10 82.7 11.6 37 3-40 9-45 (553)
287 TIGR00562 proto_IX_ox protopor 98.1 5.5E-06 1.2E-10 86.6 6.1 42 3-44 2-47 (462)
288 TIGR02733 desat_CrtD C-3',4' d 98.1 6E-06 1.3E-10 87.0 6.4 52 4-55 2-54 (492)
289 PLN02546 glutathione reductase 98.0 5E-05 1.1E-09 80.3 13.2 101 4-168 253-353 (558)
290 PLN02568 polyamine oxidase 98.0 6.3E-06 1.4E-10 86.8 6.3 43 2-44 4-51 (539)
291 PF13434 K_oxygenase: L-lysine 98.0 1.8E-05 4E-10 78.4 9.2 134 3-160 190-339 (341)
292 PRK09077 L-aspartate oxidase; 98.0 8.2E-05 1.8E-09 78.9 14.6 37 3-40 8-44 (536)
293 PLN02676 polyamine oxidase 98.0 7.1E-06 1.5E-10 85.7 6.4 54 3-56 26-81 (487)
294 COG3349 Uncharacterized conser 98.0 4.6E-06 9.9E-11 84.2 4.8 41 4-44 1-41 (485)
295 PTZ00306 NADH-dependent fumara 98.0 9.6E-05 2.1E-09 85.2 15.6 39 3-41 409-447 (1167)
296 KOG0685 Flavin-containing amin 98.0 6.5E-06 1.4E-10 81.6 5.2 41 4-44 22-63 (498)
297 TIGR01292 TRX_reduct thioredox 98.0 5.4E-05 1.2E-09 74.1 11.7 95 4-161 142-237 (300)
298 COG2081 Predicted flavoprotein 98.0 1.9E-05 4.1E-10 77.1 8.0 155 204-376 4-167 (408)
299 COG0562 Glf UDP-galactopyranos 98.0 1.4E-05 3.1E-10 75.2 6.6 75 4-89 2-77 (374)
300 PLN02576 protoporphyrinogen ox 98.0 9.3E-06 2E-10 85.7 6.2 42 3-44 12-54 (496)
301 TIGR02485 CobZ_N-term precorri 98.0 7.9E-05 1.7E-09 77.0 12.8 33 8-40 1-35 (432)
302 TIGR02734 crtI_fam phytoene de 98.0 9E-06 1.9E-10 85.9 5.6 48 6-53 1-49 (502)
303 COG1232 HemY Protoporphyrinoge 97.9 1.1E-05 2.4E-10 81.6 5.7 41 4-44 1-43 (444)
304 PF04820 Trp_halogenase: Trypt 97.9 2.7E-05 5.9E-10 80.5 8.7 60 75-162 152-211 (454)
305 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.1E-05 2.4E-10 80.7 5.2 41 4-44 2-42 (377)
306 PRK12416 protoporphyrinogen ox 97.9 1.4E-05 3.1E-10 83.4 6.3 41 4-44 2-48 (463)
307 PRK15317 alkyl hydroperoxide r 97.9 8.6E-05 1.9E-09 78.5 12.1 96 4-161 352-448 (517)
308 TIGR02061 aprA adenosine phosp 97.9 8.3E-05 1.8E-09 79.4 11.9 33 5-37 1-37 (614)
309 TIGR02730 carot_isom carotene 97.9 1.5E-05 3.2E-10 83.9 5.7 51 4-54 1-52 (493)
310 PRK13800 putative oxidoreducta 97.9 0.00012 2.5E-09 82.5 13.0 35 3-37 13-47 (897)
311 PRK07512 L-aspartate oxidase; 97.9 8.3E-05 1.8E-09 78.4 10.9 33 3-37 9-41 (513)
312 TIGR02731 phytoene_desat phyto 97.8 1.9E-05 4.1E-10 82.3 5.1 40 5-44 1-40 (453)
313 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00027 5.8E-09 71.4 12.8 91 4-161 146-242 (364)
314 PF13454 NAD_binding_9: FAD-NA 97.8 0.00019 4.2E-09 62.8 10.1 34 207-240 1-36 (156)
315 PLN02529 lysine-specific histo 97.8 2.9E-05 6.4E-10 83.8 5.4 42 3-44 160-201 (738)
316 COG1231 Monoamine oxidase [Ami 97.8 3E-05 6.6E-10 77.0 5.0 43 2-44 6-48 (450)
317 COG1053 SdhA Succinate dehydro 97.8 0.00022 4.8E-09 75.1 11.7 37 3-39 6-42 (562)
318 PRK12770 putative glutamate sy 97.7 0.00018 3.9E-09 72.2 10.1 33 4-36 173-206 (352)
319 COG0445 GidA Flavin-dependent 97.7 0.00012 2.5E-09 74.2 8.2 35 2-36 3-37 (621)
320 PTZ00363 rab-GDP dissociation 97.7 4.1E-05 8.9E-10 78.5 4.8 43 2-44 3-45 (443)
321 KOG1336 Monodehydroascorbate/f 97.7 0.00037 8.1E-09 69.5 11.0 105 4-170 214-318 (478)
322 TIGR01316 gltA glutamate synth 97.6 0.00037 7.9E-09 72.3 11.4 33 4-36 273-305 (449)
323 TIGR02732 zeta_caro_desat caro 97.6 5.1E-05 1.1E-09 79.2 4.9 40 5-44 1-40 (474)
324 PLN02487 zeta-carotene desatur 97.6 6.5E-05 1.4E-09 79.4 5.1 41 4-44 76-116 (569)
325 PLN02328 lysine-specific histo 97.6 6.6E-05 1.4E-09 81.6 5.3 42 3-44 238-279 (808)
326 TIGR03143 AhpF_homolog putativ 97.6 0.00057 1.2E-08 72.9 11.8 34 4-37 144-177 (555)
327 PRK11749 dihydropyrimidine deh 97.6 0.00074 1.6E-08 70.4 12.2 33 4-36 274-307 (457)
328 COG2907 Predicted NAD/FAD-bind 97.6 0.00013 2.9E-09 69.5 5.8 41 3-44 8-48 (447)
329 COG0029 NadB Aspartate oxidase 97.5 0.00049 1.1E-08 69.1 9.9 32 5-37 9-40 (518)
330 PRK12831 putative oxidoreducta 97.5 0.0036 7.8E-08 65.2 16.6 33 4-36 282-314 (464)
331 PLN02612 phytoene desaturase 97.5 0.00012 2.6E-09 78.0 5.3 41 3-43 93-133 (567)
332 PLN03000 amine oxidase 97.5 0.00013 2.9E-09 79.5 5.4 42 3-44 184-225 (881)
333 PLN02976 amine oxidase 97.5 0.00017 3.6E-09 81.5 6.0 42 3-44 693-734 (1713)
334 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00015 3.2E-09 72.9 5.2 35 4-38 3-37 (436)
335 COG0665 DadA Glycine/D-amino a 97.4 0.00015 3.3E-09 73.8 5.2 38 2-39 3-40 (387)
336 COG2509 Uncharacterized FAD-de 97.4 0.0025 5.3E-08 63.5 12.6 57 77-161 173-229 (486)
337 PF01134 GIDA: Glucose inhibit 97.4 0.00017 3.6E-09 71.8 4.6 42 332-374 103-150 (392)
338 PLN02852 ferredoxin-NADP+ redu 97.3 0.00015 3.2E-09 75.1 3.8 39 201-240 24-62 (491)
339 KOG1276 Protoporphyrinogen oxi 97.3 0.00023 4.9E-09 69.9 4.6 40 4-43 12-53 (491)
340 PRK12834 putative FAD-binding 97.3 0.00025 5.3E-09 75.6 5.4 39 3-41 4-44 (549)
341 KOG2960 Protein involved in th 97.3 0.00034 7.4E-09 61.9 5.1 55 4-58 77-136 (328)
342 PRK06847 hypothetical protein; 97.3 0.00078 1.7E-08 68.3 8.6 35 203-240 4-38 (375)
343 TIGR02462 pyranose_ox pyranose 97.3 0.00025 5.4E-09 74.3 5.0 40 4-43 1-40 (544)
344 PRK01438 murD UDP-N-acetylmura 97.3 0.00043 9.3E-09 72.6 6.7 34 3-36 16-49 (480)
345 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00028 6.2E-09 71.4 4.9 36 4-39 1-36 (433)
346 PRK12778 putative bifunctional 97.3 0.0085 1.8E-07 66.5 16.9 33 4-36 571-604 (752)
347 PF06100 Strep_67kDa_ant: Stre 97.3 0.0052 1.1E-07 62.4 13.6 41 3-43 2-46 (500)
348 KOG2495 NADH-dehydrogenase (ub 97.3 0.00045 9.8E-09 67.8 5.8 101 5-168 220-334 (491)
349 KOG2853 Possible oxidoreductas 97.2 0.0048 1E-07 58.9 11.9 41 3-43 86-139 (509)
350 KOG0042 Glycerol-3-phosphate d 97.2 0.00052 1.1E-08 69.2 5.6 41 3-43 67-107 (680)
351 PF07992 Pyr_redox_2: Pyridine 97.1 8.5E-05 1.8E-09 68.0 -0.5 32 205-239 1-32 (201)
352 TIGR01318 gltD_gamma_fam gluta 97.1 0.014 3.1E-07 60.8 15.9 34 4-37 283-317 (467)
353 PLN02463 lycopene beta cyclase 97.1 0.00086 1.9E-08 69.1 6.5 34 204-240 29-62 (447)
354 KOG2852 Possible oxidoreductas 97.1 0.005 1.1E-07 57.5 10.4 38 3-40 10-53 (380)
355 PRK12769 putative oxidoreducta 97.1 0.0072 1.6E-07 65.9 13.3 34 4-37 469-503 (654)
356 COG3486 IucD Lysine/ornithine 97.1 0.0037 8E-08 61.4 9.6 51 95-169 294-344 (436)
357 PF00732 GMC_oxred_N: GMC oxid 97.0 0.00053 1.2E-08 67.0 3.9 34 4-37 1-35 (296)
358 PRK12810 gltD glutamate syntha 97.0 0.015 3.3E-07 60.7 14.9 33 4-36 282-315 (471)
359 PRK12814 putative NADPH-depend 97.0 0.019 4.1E-07 62.5 16.1 33 4-36 324-357 (652)
360 PLN02172 flavin-containing mon 97.0 0.0018 3.9E-08 67.2 7.8 33 4-36 205-237 (461)
361 COG4529 Uncharacterized protei 97.0 0.0048 1.1E-07 62.2 10.3 37 204-240 2-38 (474)
362 COG1206 Gid NAD(FAD)-utilizing 97.0 0.0034 7.3E-08 59.7 8.2 37 1-37 1-37 (439)
363 PRK12779 putative bifunctional 97.0 0.0087 1.9E-07 67.4 13.0 33 4-36 448-480 (944)
364 TIGR01789 lycopene_cycl lycope 96.9 0.0011 2.4E-08 66.8 5.5 32 344-376 107-138 (370)
365 KOG2665 Predicted FAD-dependen 96.9 0.0052 1.1E-07 58.1 9.2 37 3-39 48-86 (453)
366 PRK05868 hypothetical protein; 96.9 0.002 4.3E-08 65.2 6.7 34 204-240 2-35 (372)
367 KOG2844 Dimethylglycine dehydr 96.9 0.0044 9.5E-08 64.3 9.0 57 76-161 186-242 (856)
368 COG3075 GlpB Anaerobic glycero 96.8 0.0014 3.1E-08 62.2 4.6 35 1-36 1-35 (421)
369 COG3573 Predicted oxidoreducta 96.8 0.002 4.4E-08 61.2 5.5 48 2-49 4-53 (552)
370 KOG2311 NAD/FAD-utilizing prot 96.8 0.0042 9.2E-08 61.9 7.6 33 3-35 28-60 (679)
371 TIGR01372 soxA sarcosine oxida 96.8 0.012 2.5E-07 67.2 12.3 95 4-167 318-413 (985)
372 PRK09897 hypothetical protein; 96.8 0.0063 1.4E-07 64.0 9.4 36 204-240 2-37 (534)
373 PTZ00188 adrenodoxin reductase 96.8 0.0014 3.1E-08 67.1 4.4 38 201-240 37-74 (506)
374 PRK09853 putative selenate red 96.7 0.027 5.7E-07 63.1 14.3 33 4-36 669-703 (1019)
375 PF05834 Lycopene_cycl: Lycope 96.7 0.0025 5.3E-08 64.6 5.9 45 331-376 94-142 (374)
376 PRK05192 tRNA uridine 5-carbox 96.6 0.0063 1.4E-07 64.3 8.2 32 205-239 6-37 (618)
377 PRK12809 putative oxidoreducta 96.6 0.063 1.4E-06 58.4 16.1 34 4-37 452-486 (639)
378 KOG4716 Thioredoxin reductase 96.6 0.0057 1.2E-07 58.3 6.9 100 4-160 199-298 (503)
379 TIGR01317 GOGAT_sm_gam glutama 96.6 0.1 2.2E-06 54.8 17.1 34 4-37 284-318 (485)
380 PRK02106 choline dehydrogenase 96.6 0.0022 4.8E-08 68.7 4.7 34 3-36 5-39 (560)
381 PRK12771 putative glutamate sy 96.6 0.06 1.3E-06 57.7 15.7 34 3-36 267-301 (564)
382 KOG1346 Programmed cell death 96.6 0.0078 1.7E-07 59.0 7.6 101 2-167 346-451 (659)
383 PF03486 HI0933_like: HI0933-l 96.5 0.002 4.2E-08 65.5 3.7 48 328-376 113-166 (409)
384 KOG4254 Phytoene desaturase [C 96.5 0.0015 3.2E-08 64.7 2.6 47 3-49 14-62 (561)
385 TIGR03315 Se_ygfK putative sel 96.5 0.028 6.1E-07 63.1 12.7 33 4-36 667-701 (1012)
386 PRK07236 hypothetical protein; 96.4 0.0073 1.6E-07 61.5 7.3 36 202-240 5-40 (386)
387 PRK12775 putative trifunctiona 96.4 0.028 6.1E-07 64.0 12.3 33 4-36 572-605 (1006)
388 TIGR03862 flavo_PP4765 unchara 96.4 0.028 6.2E-07 56.3 10.8 62 70-161 76-140 (376)
389 PRK13984 putative oxidoreducta 96.4 0.094 2E-06 56.8 15.7 30 4-33 419-454 (604)
390 COG0492 TrxB Thioredoxin reduc 96.3 0.034 7.4E-07 54.1 10.8 94 4-161 144-237 (305)
391 TIGR01790 carotene-cycl lycope 96.3 0.006 1.3E-07 62.1 5.9 33 205-240 1-33 (388)
392 KOG0405 Pyridine nucleotide-di 96.3 0.018 4E-07 55.3 8.4 104 3-170 189-292 (478)
393 PRK08163 salicylate hydroxylas 96.3 0.01 2.2E-07 60.6 7.3 35 203-240 4-38 (396)
394 TIGR01470 cysG_Nterm siroheme 96.3 0.0048 1E-07 56.5 4.3 35 200-237 6-40 (205)
395 PLN02697 lycopene epsilon cycl 96.3 0.0065 1.4E-07 63.8 5.7 33 204-239 109-141 (529)
396 PRK07588 hypothetical protein; 96.3 0.012 2.5E-07 60.1 7.5 34 204-240 1-34 (391)
397 TIGR00136 gidA glucose-inhibit 96.2 0.013 2.9E-07 61.8 7.4 32 205-239 2-33 (617)
398 TIGR02032 GG-red-SF geranylger 96.1 0.0082 1.8E-07 58.3 5.5 33 205-240 2-34 (295)
399 TIGR03378 glycerol3P_GlpB glyc 96.1 0.0068 1.5E-07 61.2 4.7 33 4-36 1-33 (419)
400 TIGR01810 betA choline dehydro 96.1 0.0051 1.1E-07 65.4 4.0 33 5-37 1-34 (532)
401 PRK06753 hypothetical protein; 96.1 0.025 5.5E-07 57.2 8.8 33 205-240 2-34 (373)
402 KOG3851 Sulfide:quinone oxidor 96.0 0.0059 1.3E-07 57.8 3.6 35 203-238 39-73 (446)
403 PRK09126 hypothetical protein; 96.0 0.028 6.1E-07 57.3 8.9 34 204-240 4-37 (392)
404 PRK08773 2-octaprenyl-3-methyl 96.0 0.014 3E-07 59.6 6.5 34 204-240 7-40 (392)
405 PRK04176 ribulose-1,5-biphosph 96.0 0.02 4.3E-07 54.6 7.0 37 201-240 23-59 (257)
406 TIGR01984 UbiH 2-polyprenyl-6- 95.9 0.011 2.5E-07 59.9 5.6 33 205-240 1-34 (382)
407 PRK05714 2-octaprenyl-3-methyl 95.9 0.027 5.8E-07 57.7 8.3 48 329-377 117-169 (405)
408 KOG2755 Oxidoreductase [Genera 95.9 0.021 4.5E-07 52.8 6.3 33 206-239 2-34 (334)
409 COG0654 UbiH 2-polyprenyl-6-me 95.9 0.045 9.7E-07 55.7 9.6 48 328-376 108-162 (387)
410 PRK06567 putative bifunctional 95.8 0.0083 1.8E-07 66.3 4.2 36 201-239 381-416 (1028)
411 PRK07333 2-octaprenyl-6-methox 95.8 0.015 3.2E-07 59.5 5.8 35 205-240 3-37 (403)
412 PRK05329 anaerobic glycerol-3- 95.8 0.07 1.5E-06 54.5 10.4 94 7-161 219-317 (422)
413 PRK01438 murD UDP-N-acetylmura 95.7 0.012 2.7E-07 61.7 4.8 36 201-239 14-49 (480)
414 KOG1800 Ferredoxin/adrenodoxin 95.7 0.024 5.2E-07 55.2 6.1 36 204-240 21-56 (468)
415 PRK07045 putative monooxygenas 95.7 0.012 2.7E-07 59.8 4.6 34 204-240 6-39 (388)
416 COG2303 BetA Choline dehydroge 95.7 0.011 2.5E-07 62.6 4.4 34 3-36 7-40 (542)
417 COG2072 TrkA Predicted flavopr 95.6 0.048 1E-06 56.3 8.8 36 202-239 7-42 (443)
418 PRK06834 hypothetical protein; 95.6 0.028 6.2E-07 58.9 7.1 34 204-240 4-37 (488)
419 PRK06718 precorrin-2 dehydroge 95.6 0.021 4.6E-07 52.1 5.4 35 200-237 7-41 (202)
420 PRK10157 putative oxidoreducta 95.5 0.014 3E-07 60.3 4.4 34 204-240 6-39 (428)
421 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.015 3.3E-07 50.8 4.0 32 5-36 1-32 (157)
422 PF03721 UDPG_MGDP_dh_N: UDP-g 95.5 0.016 3.4E-07 52.2 3.9 34 4-37 1-34 (185)
423 PF00743 FMO-like: Flavin-bind 95.4 0.043 9.4E-07 57.9 7.5 33 3-35 183-215 (531)
424 PRK05562 precorrin-2 dehydroge 95.4 0.024 5.1E-07 52.2 4.8 35 200-237 22-56 (223)
425 PLN02785 Protein HOTHEAD 95.3 0.019 4.1E-07 61.5 4.7 34 3-37 55-88 (587)
426 PF04820 Trp_halogenase: Trypt 95.3 0.044 9.6E-07 56.8 7.3 36 205-240 1-36 (454)
427 PF13738 Pyr_redox_3: Pyridine 95.3 0.037 7.9E-07 50.6 6.0 31 207-239 1-31 (203)
428 TIGR03219 salicylate_mono sali 95.3 0.061 1.3E-06 55.3 8.2 34 205-240 2-35 (414)
429 PRK07494 2-octaprenyl-6-methox 95.3 0.042 9.1E-07 55.9 6.9 34 204-240 8-41 (388)
430 KOG2311 NAD/FAD-utilizing prot 95.2 0.12 2.5E-06 52.0 9.3 31 205-238 30-60 (679)
431 PRK08401 L-aspartate oxidase; 95.2 0.12 2.7E-06 53.9 10.2 33 204-239 2-34 (466)
432 PRK06184 hypothetical protein; 95.1 0.012 2.6E-07 62.2 2.4 34 204-240 4-37 (502)
433 PRK08849 2-octaprenyl-3-methyl 95.1 0.028 6.1E-07 57.1 5.0 32 205-239 5-36 (384)
434 COG0445 GidA Flavin-dependent 95.1 0.029 6.4E-07 57.3 4.9 33 204-239 5-37 (621)
435 PRK05732 2-octaprenyl-6-methox 95.0 0.049 1.1E-06 55.5 6.6 32 204-238 4-38 (395)
436 COG0569 TrkA K+ transport syst 95.0 0.029 6.2E-07 52.3 4.3 34 4-37 1-34 (225)
437 PRK08020 ubiF 2-octaprenyl-3-m 95.0 0.029 6.3E-07 57.1 4.7 33 204-239 6-38 (391)
438 KOG0399 Glutamate synthase [Am 94.9 0.079 1.7E-06 58.4 7.8 38 200-240 1782-1819(2142)
439 PRK07608 ubiquinone biosynthes 94.9 0.043 9.4E-07 55.8 5.8 33 205-240 7-39 (388)
440 COG1251 NirB NAD(P)H-nitrite r 94.9 0.069 1.5E-06 56.7 7.0 97 4-161 146-242 (793)
441 TIGR01988 Ubi-OHases Ubiquinon 94.9 0.045 9.9E-07 55.5 5.8 33 205-240 1-33 (385)
442 COG3634 AhpF Alkyl hydroperoxi 94.9 0.25 5.4E-06 47.8 10.0 97 3-161 354-451 (520)
443 PRK06475 salicylate hydroxylas 94.8 0.072 1.6E-06 54.5 7.2 34 204-240 3-36 (400)
444 PF13241 NAD_binding_7: Putati 94.8 0.029 6.3E-07 45.1 3.3 34 2-35 6-39 (103)
445 TIGR01470 cysG_Nterm siroheme 94.8 0.049 1.1E-06 49.9 5.1 34 2-35 8-41 (205)
446 PF01593 Amino_oxidase: Flavin 94.8 0.038 8.3E-07 56.7 5.0 41 13-53 1-44 (450)
447 COG1086 Predicted nucleoside-d 94.8 0.056 1.2E-06 55.7 5.9 40 199-240 246-286 (588)
448 PRK11064 wecC UDP-N-acetyl-D-m 94.7 0.035 7.5E-07 56.9 4.5 37 1-37 1-37 (415)
449 KOG3923 D-aspartate oxidase [A 94.7 0.097 2.1E-06 49.4 6.9 36 1-36 1-43 (342)
450 PF12831 FAD_oxidored: FAD dep 94.7 0.035 7.6E-07 57.3 4.5 33 205-240 1-33 (428)
451 PRK14106 murD UDP-N-acetylmura 94.7 0.042 9E-07 57.2 5.0 35 2-36 4-38 (450)
452 PRK01747 mnmC bifunctional tRN 94.7 0.088 1.9E-06 57.6 7.7 33 204-239 261-293 (662)
453 COG0493 GltD NADPH-dependent g 94.6 0.024 5.3E-07 58.3 3.1 38 200-240 120-157 (457)
454 PRK08244 hypothetical protein; 94.6 0.11 2.3E-06 54.8 7.9 34 204-240 3-36 (493)
455 COG1004 Ugd Predicted UDP-gluc 94.6 0.039 8.4E-07 54.4 4.1 33 4-36 1-33 (414)
456 TIGR02023 BchP-ChlP geranylger 94.5 0.062 1.3E-06 54.7 5.9 31 205-238 2-32 (388)
457 PF02737 3HCDH_N: 3-hydroxyacy 94.5 0.049 1.1E-06 48.8 4.4 33 5-37 1-33 (180)
458 PRK06719 precorrin-2 dehydroge 94.5 0.061 1.3E-06 46.9 4.8 33 2-34 12-44 (157)
459 PRK11445 putative oxidoreducta 94.5 0.087 1.9E-06 52.8 6.6 32 205-240 3-34 (351)
460 PRK07530 3-hydroxybutyryl-CoA 94.5 0.048 1E-06 53.2 4.6 36 1-36 2-37 (292)
461 PRK08293 3-hydroxybutyryl-CoA 94.4 0.053 1.1E-06 52.7 4.7 36 1-36 1-36 (287)
462 PRK02705 murD UDP-N-acetylmura 94.4 0.044 9.6E-07 57.2 4.5 34 5-38 2-35 (459)
463 PRK07190 hypothetical protein; 94.4 0.026 5.7E-07 59.2 2.7 34 204-240 6-39 (487)
464 PRK08013 oxidoreductase; Provi 94.3 0.099 2.1E-06 53.5 6.8 34 204-240 4-37 (400)
465 PRK10015 oxidoreductase; Provi 94.3 0.025 5.5E-07 58.3 2.5 33 205-240 7-39 (429)
466 PF13241 NAD_binding_7: Putati 94.2 0.027 5.9E-07 45.3 1.9 37 200-239 4-40 (103)
467 PRK08850 2-octaprenyl-6-methox 94.1 0.11 2.4E-06 53.2 6.7 32 204-238 5-36 (405)
468 PLN00093 geranylgeranyl diphos 94.1 0.14 3E-06 53.2 7.3 34 204-240 40-73 (450)
469 PF01262 AlaDh_PNT_C: Alanine 94.1 0.077 1.7E-06 46.9 4.6 34 3-36 20-53 (168)
470 PRK06718 precorrin-2 dehydroge 94.0 0.084 1.8E-06 48.2 4.9 34 2-35 9-42 (202)
471 PF00996 GDI: GDP dissociation 94.0 0.069 1.5E-06 54.5 4.8 42 3-44 4-45 (438)
472 PF01488 Shikimate_DH: Shikima 94.0 0.11 2.3E-06 44.2 5.1 33 3-35 12-45 (135)
473 PRK07538 hypothetical protein; 94.0 0.12 2.6E-06 53.1 6.6 33 205-240 2-34 (413)
474 PRK06481 fumarate reductase fl 93.9 0.37 8E-06 50.9 10.3 34 204-240 62-95 (506)
475 PRK06035 3-hydroxyacyl-CoA deh 93.9 0.072 1.6E-06 51.9 4.5 37 1-37 1-37 (291)
476 COG1148 HdrA Heterodisulfide r 93.8 0.099 2.1E-06 52.7 5.3 36 202-240 123-158 (622)
477 PRK06183 mhpA 3-(3-hydroxyphen 93.8 0.14 3.1E-06 54.5 7.1 34 204-240 11-44 (538)
478 PRK06249 2-dehydropantoate 2-r 93.8 0.087 1.9E-06 51.9 5.0 35 1-35 3-37 (313)
479 PRK04148 hypothetical protein; 93.7 0.07 1.5E-06 44.7 3.4 33 4-37 18-50 (134)
480 PRK05808 3-hydroxybutyryl-CoA 93.7 0.084 1.8E-06 51.1 4.5 37 1-37 1-37 (282)
481 PRK06126 hypothetical protein; 93.6 0.04 8.7E-07 58.9 2.3 35 203-240 7-41 (545)
482 PRK07066 3-hydroxybutyryl-CoA 93.5 0.097 2.1E-06 51.3 4.7 34 4-37 8-41 (321)
483 PRK07819 3-hydroxybutyryl-CoA 93.5 0.094 2E-06 50.8 4.4 34 4-37 6-39 (286)
484 PRK06129 3-hydroxyacyl-CoA deh 93.4 0.086 1.9E-06 51.8 4.2 34 4-37 3-36 (308)
485 KOG3855 Monooxygenase involved 93.4 0.084 1.8E-06 52.1 3.9 33 3-35 36-72 (481)
486 KOG2614 Kynurenine 3-monooxyge 93.2 0.21 4.6E-06 49.6 6.4 34 204-240 3-36 (420)
487 PRK06719 precorrin-2 dehydroge 93.2 0.089 1.9E-06 45.9 3.4 34 200-236 10-43 (157)
488 PRK09260 3-hydroxybutyryl-CoA 93.1 0.11 2.3E-06 50.6 4.2 34 4-37 2-35 (288)
489 PRK06996 hypothetical protein; 93.0 0.2 4.4E-06 51.1 6.4 37 203-239 11-48 (398)
490 TIGR00275 flavoprotein, HI0933 93.0 0.065 1.4E-06 54.8 2.7 31 207-240 1-31 (400)
491 PF01488 Shikimate_DH: Shikima 93.0 0.12 2.6E-06 43.9 3.8 39 200-240 9-47 (135)
492 PF13450 NAD_binding_8: NAD(P) 92.9 0.081 1.8E-06 38.8 2.4 30 208-240 1-30 (68)
493 KOG0404 Thioredoxin reductase 92.9 0.58 1.3E-05 42.4 8.0 96 4-161 158-254 (322)
494 TIGR00518 alaDH alanine dehydr 92.9 0.15 3.2E-06 51.4 5.0 34 3-36 167-200 (370)
495 KOG1238 Glucose dehydrogenase/ 92.8 0.12 2.5E-06 54.3 4.2 36 3-38 57-93 (623)
496 PF02558 ApbA: Ketopantoate re 92.8 0.16 3.5E-06 43.8 4.6 30 6-35 1-30 (151)
497 COG3380 Predicted NAD/FAD-depe 92.7 0.34 7.3E-06 45.4 6.5 33 205-240 3-35 (331)
498 PF02558 ApbA: Ketopantoate re 92.7 0.088 1.9E-06 45.5 2.7 31 206-239 1-31 (151)
499 PRK05335 tRNA (uracil-5-)-meth 92.7 0.11 2.3E-06 52.7 3.6 34 204-240 3-36 (436)
500 KOG4405 GDP dissociation inhib 92.6 0.13 2.8E-06 50.7 3.9 42 3-44 8-49 (547)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=7.4e-79 Score=629.37 Aligned_cols=455 Identities=34% Similarity=0.625 Sum_probs=264.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc----------cccceeecCCccceeecCCCCCCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK----------TVETTMLQTPKQLYQFSDYPWPDSVTTD 72 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (522)
+++|||||||+|||++|+.|++.|++++|||+++++||+|++ .|+++.+|+|+.+|+|+|+|+|++ .+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~-~p~ 79 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPED-YPD 79 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCC-CSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCC-CCC
Confidence 479999999999999999999999999999999999999984 489999999999999999999987 689
Q ss_pred CCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeC
Q 009917 73 FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (522)
Q Consensus 73 ~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d 152 (522)
|+++.++.+||+.||++|+|.++|+|||+|++|++.+ |. ...++|.|++++. |+.++..||
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~--d~---------------~~~~~W~V~~~~~--g~~~~~~fD 140 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDP--DF---------------SATGKWEVTTEND--GKEETEEFD 140 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEET--TT---------------T-ETEEEEEETTT--TEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeecc--cc---------------CCCceEEEEeecC--CeEEEEEeC
Confidence 9999999999999999999999999999999999875 10 0246799988653 666778899
Q ss_pred EEEEeecccCCCCCCCC--CCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCC
Q 009917 153 FVILCVGRFSDVPNIPE--FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN 230 (522)
Q Consensus 153 ~lvvAtG~~s~~p~~P~--~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~ 230 (522)
+||+|||++ +.|++|. +| |++.|+|+++||++|++ ++.++||||+|||+|+||+|||.+|+..+.
T Consensus 141 ~VvvatG~~-~~P~~P~~~~~---G~e~F~G~i~HS~~yr~------~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~--- 207 (531)
T PF00743_consen 141 AVVVATGHF-SKPNIPEPSFP---GLEKFKGEIIHSKDYRD------PEPFKGKRVLVVGGGNSGADIAVELSRVAK--- 207 (531)
T ss_dssp EEEEEE-SS-SCESB-----C---TGGGHCSEEEEGGG--T------GGGGTTSEEEEESSSHHHHHHHHHHTTTSC---
T ss_pred eEEEcCCCc-CCCCCChhhhh---hhhcCCeeEEccccCcC------hhhcCCCEEEEEeCCHhHHHHHHHHHHhcC---
Confidence 999999999 6999996 88 99999999999999998 467999999999999999999999998764
Q ss_pred ceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCC
Q 009917 231 PCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVP 310 (522)
Q Consensus 231 ~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 310 (522)
+|+++.|++.|++|+....|.|.+..+.+|+..++..... .++.+...++.++..+....++|.|
T Consensus 208 ~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp---------------~~~~~~~~~~~l~~~~~~~~~gl~p 272 (531)
T PF00743_consen 208 KVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLP---------------ESLSNWLLEKKLNKRFDHENYGLKP 272 (531)
T ss_dssp CEEEECC-------------------------------------------------------------------------
T ss_pred CeEEEEeccccccccccccccccccccccccccccccccc---------------ccccccccccccccccccccccccc
Confidence 5999999999999998767899988777765443322110 0111222233344444555677888
Q ss_pred CCcccccccccceeccCCcccccccCCcEEEeecCceeEecCcEEEcCCCceecccEEEEecCCCCCccccccccccccc
Q 009917 311 KHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQ 390 (522)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~gv~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~ 390 (522)
.+.+ .++.+++++++.+.+..|+|+++ ..|+++++++|+|+||++..++|+||+||||+.++++++
T Consensus 273 ~~~~-----~~~~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~-------- 338 (531)
T PF00743_consen 273 KHRF-----FSQHPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLD-------- 338 (531)
T ss_dssp -------------------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB---------
T ss_pred cccc-----ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc--------
Confidence 8765 45567899999999999999986 458999999999999997347999999999998865543
Q ss_pred ccccCCCCCCcccceeecCCCC--CceEEEcccCCc-chhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHh
Q 009917 391 DYLAGSPTEKLPLYREIIHPQI--PQLAIIGFSESI-SNLYTSEMRCRWLAELLDGAVKLPSIKEMEEDMRKWDEYMKRY 467 (522)
Q Consensus 391 ~~~~~~~~~~~~ly~~~~~~~~--pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~~~lp~~~~~~~~~~~~~~~~~~~ 467 (522)
+.+....++...||+++++|++ |+|+|||+++.. +.++++|+||||+|++++|+.+||+.++|.+++.++++++.+.
T Consensus 339 ~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~ 418 (531)
T PF00743_consen 339 ESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKR 418 (531)
T ss_dssp TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2222233455679999999965 899999998764 4678999999999999999999999999999998886665543
Q ss_pred cCCCCCCccceeeceecHHHHHHHcCCCCCCCchhhh-------hhhccCCCcCCCCCCC
Q 009917 468 SGKYYRRSCIGALHIWYNDQLCKDMGWNPKRKKGWFA-------ELFEPYGPVDYAPPST 520 (522)
Q Consensus 468 ~~~~~~~~~~~~~~~~y~d~l~~~~g~~~~~~~~~~~-------~~~~p~~~~~y~~~~~ 520 (522)
.. ...+++...++..|+|+||+++|+.|...+.|++ -+|+|+.|++||=..|
T Consensus 419 ~~-~~~~~~~~~d~~~y~deLA~~iG~~P~~~~l~~~dp~l~~~~~~gp~~p~~YRL~Gp 477 (531)
T PF00743_consen 419 FG-FSPRHTIQVDYIDYMDELAREIGCKPNFWKLFLTDPKLARKLYFGPCTPYQYRLFGP 477 (531)
T ss_dssp -S-HHHHHHHHHHHHHHHHTTS--------------------------------------
T ss_pred cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 32 1223455567889999999999999988765544 4899999999995443
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=3.5e-60 Score=484.77 Aligned_cols=365 Identities=26% Similarity=0.500 Sum_probs=292.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc---------------------cccceeecCCccceeec
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---------------------TVETTMLQTPKQLYQFS 61 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~---------------------~~~~~~~~~~~~~~~~~ 61 (522)
.++|||||||+|||+||+.|++.|++++|||+++.+||+|.+ .|+++++|+|+..|.|+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 589999999999999999999999999999999999999965 37888999999999999
Q ss_pred CCCCCCC------CCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEE
Q 009917 62 DYPWPDS------VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (522)
Q Consensus 62 ~~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (522)
++|+++. ..+.||++.++.+||++|++++++.++|+|+++|++|++.+ ++|.
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~----------------------~~w~ 147 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD----------------------GKWR 147 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC----------------------CeEE
Confidence 9998753 14679999999999999999999988899999999998854 5699
Q ss_pred EEEecCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCH
Q 009917 136 VAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSA 215 (522)
Q Consensus 136 v~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg 215 (522)
|++.++. +...+..||+||+|||++ ..|++|++| |++.|.|.++|++.|+.. +.++||+|+|||+|.||
T Consensus 148 V~~~~~~-~~~~~~~~d~VIvAtG~~-~~P~~P~ip---G~~~f~G~~iHs~~yr~~------~~~~gk~VvVVG~G~Sg 216 (461)
T PLN02172 148 VQSKNSG-GFSKDEIFDAVVVCNGHY-TEPNVAHIP---GIKSWPGKQIHSHNYRVP------DPFKNEVVVVIGNFASG 216 (461)
T ss_pred EEEEcCC-CceEEEEcCEEEEeccCC-CCCcCCCCC---CcccCCceEEEecccCCc------cccCCCEEEEECCCcCH
Confidence 9987642 334467899999999998 689999999 999999999999999973 56899999999999999
Q ss_pred HHHHHHHhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHH
Q 009917 216 LDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEA 295 (522)
Q Consensus 216 ~dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (522)
+|+|.+|+..+. +|++++|++... ...
T Consensus 217 ~diA~~L~~~a~---~V~l~~r~~~~~--~~~------------------------------------------------ 243 (461)
T PLN02172 217 ADISRDIAKVAK---EVHIASRASESD--TYE------------------------------------------------ 243 (461)
T ss_pred HHHHHHHHHhCC---eEEEEEeecccc--ccc------------------------------------------------
Confidence 999999999865 499999976310 000
Q ss_pred HHhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecCceeEe-cCcEEEcCCCceecccEEEEecCC
Q 009917 296 DIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFC-EDGIVVDGQTTPLKTDLVILATGF 374 (522)
Q Consensus 296 ~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~-~~gv~~~dG~~~~~~D~VI~aTG~ 374 (522)
.+ ..| ..++.+ ...|..+. +++|+|+||+. +++|.||+||||
T Consensus 244 ----~~------~~~-------------------------~~~v~~-~~~I~~~~~~g~V~f~DG~~-~~~D~Ii~~TGy 286 (461)
T PLN02172 244 ----KL------PVP-------------------------QNNLWM-HSEIDTAHEDGSIVFKNGKV-VYADTIVHCTGY 286 (461)
T ss_pred ----cC------cCC-------------------------CCceEE-CCcccceecCCeEEECCCCC-ccCCEEEECCcC
Confidence 00 000 011111 11233333 34599999998 999999999999
Q ss_pred CCCcccccccccccccccccCCCCCCcccceeecCCCC-CceEEEcccCCcchhhhHHHHHHHHHHHHcCCCCCCCHHHH
Q 009917 375 KGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQI-PQLAIIGFSESISNLYTSEMRCRWLAELLDGAVKLPSIKEM 453 (522)
Q Consensus 375 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~-pnl~~iG~~~~~~~~~~~e~qa~~ia~~l~g~~~lp~~~~~ 453 (522)
++++++++... .+..+++...+||++++++.+ |||+|+|++.....++++|+||+|+|++|+|+.+||+.++|
T Consensus 287 ~~~~pfL~~~~------~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m 360 (461)
T PLN02172 287 KYHFPFLETNG------YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKM 360 (461)
T ss_pred CccccccCccc------ceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 99987654211 111133445579999999985 99999999876778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCC--ccceeeceecHHHHHHHcCCCCCC
Q 009917 454 EEDMRKWDEYMKRYSGKYYRR--SCIGALHIWYNDQLCKDMGWNPKR 498 (522)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~y~d~l~~~~g~~~~~ 498 (522)
.++++++.+.++... ...+ |.+...+..|+|+|++++|++|..
T Consensus 361 ~~~~~~~~~~~~~~g--~~~r~~h~~~~~~~~y~~~la~~~g~~~~~ 405 (461)
T PLN02172 361 MEDINAWYASLEALG--IPKRYTHKLGKIQSEYLNWIAEECGCPLVE 405 (461)
T ss_pred HHHHHHHHHHHHhcC--CCCceeEEcCccHHHHHHHHHHHhCCCCCH
Confidence 999988866554432 1112 334445678999999999997654
No 3
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.2e-53 Score=421.77 Aligned_cols=392 Identities=30% Similarity=0.469 Sum_probs=297.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccccc----------ccceeecCCccceeecCCCCCCCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKT----------VETTMLQTPKQLYQFSDYPWPDSVT 70 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (522)
|..++|||||||+|||++|+.|+++|++++||||.+++||.|.+. |..+++|+|+..|+|+++|+++...
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 346899999999999999999999999999999999999999985 9999999999999999999998755
Q ss_pred CCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEE
Q 009917 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (522)
Q Consensus 71 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~ 150 (522)
..||++.++.+||++||++|+|.+.|+|+++|..++... +++|.|.+.+..+. +....
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~---------------------~gkW~V~~~~~~~~-~~~~i 141 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID---------------------KGKWRVTTKDNGTQ-IEEEI 141 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc---------------------CCceeEEEecCCcc-eeEEE
Confidence 666999999999999999999999999999999999864 26899999887433 56789
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCC
Q 009917 151 VDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN 230 (522)
Q Consensus 151 ~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~ 230 (522)
||.||||||++ ..|++|.+|+. +++.|+|+++||++|+. .+.+++|+|+|||+|+||+|++.+++..+.+
T Consensus 142 fd~VvVctGh~-~~P~~P~~~g~-~~~~f~G~~iHS~~Yk~------~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~-- 211 (448)
T KOG1399|consen 142 FDAVVVCTGHY-VEPRIPQIPGP-GIESFKGKIIHSHDYKS------PEKFRDKVVLVVGCGNSGMDISLDLLRVAKE-- 211 (448)
T ss_pred eeEEEEcccCc-CCCCCCcCCCC-chhhcCCcceehhhccC------cccccCceEEEECCCccHHHHHHHHHHhccC--
Confidence 99999999999 68999999822 27899999999999997 4679999999999999999999999988754
Q ss_pred ceEEEEcccc-eeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCC
Q 009917 231 PCTVLYRTEH-WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMV 309 (522)
Q Consensus 231 ~Vt~v~r~~~-~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (522)
|++..+++. ...+..
T Consensus 212 -v~~~~~~~~~~~~~~~--------------------------------------------------------------- 227 (448)
T KOG1399|consen 212 -VHLSVVSPKVHVEPPE--------------------------------------------------------------- 227 (448)
T ss_pred -cceeeecccccccccc---------------------------------------------------------------
Confidence 888766210 010100
Q ss_pred CCCcccccccccceeccCCcccccccCCcEEEeecCceeEecCcEEEcCCCceecccEEEEecCCCCCcccccccccccc
Q 009917 310 PKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTF 389 (522)
Q Consensus 310 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~gv~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l 389 (522)
....++..+.. |..++++++++.++.....+|.||+||||...+++++....
T Consensus 228 ------------------------~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~--- 279 (448)
T KOG1399|consen 228 ------------------------ILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGL--- 279 (448)
T ss_pred ------------------------eeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCc---
Confidence 00112223333 78888999666555443889999999999988665432110
Q ss_pred cccccCCCCCCcccceeecCCCC-CceEEEcccCCcchhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 009917 390 QDYLAGSPTEKLPLYREIIHPQI-PQLAIIGFSESISNLYTSEMRCRWLAELLDGAVKLPSIKEMEEDMRKWDEYMKRYS 468 (522)
Q Consensus 390 ~~~~~~~~~~~~~ly~~~~~~~~-pnl~~iG~~~~~~~~~~~e~qa~~ia~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~ 468 (522)
....++...++|++++++.+ |.+.++|.....+.++.+|.|++|++++++|+.++|+.++|..+.......+....
T Consensus 280 ---~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~ 356 (448)
T KOG1399|consen 280 ---GTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVG 356 (448)
T ss_pred ---eeeccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhc
Confidence 12245556789999999876 56677765543367899999999999999999999999999887766644333322
Q ss_pred CCCCCCcccee---eceecHHHHHHHcCCCCCCCchhhhhhhccCCCcCCCCCCC
Q 009917 469 GKYYRRSCIGA---LHIWYNDQLCKDMGWNPKRKKGWFAELFEPYGPVDYAPPST 520 (522)
Q Consensus 469 ~~~~~~~~~~~---~~~~y~d~l~~~~g~~~~~~~~~~~~~~~p~~~~~y~~~~~ 520 (522)
... .+++... ....|...++...|++-.-....+.-|++|+++..|+-..+
T Consensus 357 ~~~-~~~t~~~~~~~l~~y~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~ 410 (448)
T KOG1399|consen 357 LAT-GRHTHVPDYDELAEYINWFADLCGFPKTEPWLAKEGWKGPCGLYAYGLTGP 410 (448)
T ss_pred ccc-cccccccchHHHHHHhhhhhhhcCCCCcchHHhhhhccCccceeEeecccC
Confidence 110 1222111 13345555555556543322233346889999988876543
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=369.14 Aligned_cols=391 Identities=25% Similarity=0.376 Sum_probs=285.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCc-eEEEecCCCccccccc-cccceeecCCccceeecCCCCCCCCCCCCCChhHH
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIK-TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~-v~i~e~~~~~Gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (522)
++.+|+|||||+|||++|++|++.|.+ ++|||+++++||+|+. +||++++++|+..++|+++|++ +...|+...++
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~--~~~~~~~~~~~ 84 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR--WDEAFAPFAEI 84 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC--CcccCCCcccH
Confidence 468999999999999999999999998 9999999999999999 9999999999999999999998 25778888889
Q ss_pred HHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeec
Q 009917 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (522)
Q Consensus 80 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG 159 (522)
.+|+.+++++|++..++++++.|..++++. .++.|+|+++++.. .+ ++||+||+|||
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~--------------------~~~~w~V~~~~~~~--~~-~~a~~vV~ATG 141 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDE--------------------DTKRWTVTTSDGGT--GE-LTADFVVVATG 141 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecC--------------------CCCeEEEEEcCCCe--ee-EecCEEEEeec
Confidence 999999999999999999999999999876 24579999998742 22 78999999999
Q ss_pred ccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 160 ~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
.+ +.|++|+|+ |.+.|.|+++||++|++ ..+++||+|+|||+|+||+|+|.+|++.++ +||+++|++
T Consensus 142 ~~-~~P~iP~~~---G~~~f~g~~~HS~~~~~------~~~~~GKrV~VIG~GaSA~di~~~l~~~ga---~vt~~qRs~ 208 (443)
T COG2072 142 HL-SEPYIPDFA---GLDEFKGRILHSADWPN------PEDLRGKRVLVIGAGASAVDIAPELAEVGA---SVTLSQRSP 208 (443)
T ss_pred CC-CCCCCCCCC---CccCCCceEEchhcCCC------ccccCCCeEEEECCCccHHHHHHHHHhcCC---eeEEEecCC
Confidence 99 699999999 99999999999999998 468999999999999999999999999875 499999999
Q ss_pred ceeecCCCCCCCchhhHHHHHHHHHhhc--CCChhHHHHH-HH---h--hhhhhHHHHHHHHHHHHhhhc--cccccCCC
Q 009917 240 HWNIPDYFPWGFPLAYLYLNRFAELLVH--KPGEGFLLSL-LA---T--MLSPLRWAISKFVEADIKKKH--RLAKFGMV 309 (522)
Q Consensus 240 ~~~~p~~~~~g~p~~~~~~~r~~~~~~~--~~~~~~~~~~-~~---~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 309 (522)
.|++|..... .+... ...+...+.. ......+... .. . ................+.... ......+.
T Consensus 209 ~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (443)
T COG2072 209 PHILPKPLLG-EEVGG--RLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLG 285 (443)
T ss_pred Cceecccccc-cchHH--HHHHhhhCccceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcC
Confidence 9998876421 11110 0111100000 0000000000 00 0 000001111111111121111 11222334
Q ss_pred CCCcccccccccceeccCCcccccccCCcEEEeecCceeEecCcEEEcCCCceecccEEEEecCCCCC-ccccccccccc
Q 009917 310 PKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCEDGIVVDGQTTPLKTDLVILATGFKGD-VKLKNIFLSQT 388 (522)
Q Consensus 310 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~gv~~~dG~~~~~~D~VI~aTG~~~~-~~l~~~~~~~~ 388 (522)
|.+.. .|++...+..+++....+++.++...+..+.+.++..++|.+ ++.|+++.+||++.+ ....+.. .
T Consensus 286 p~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~e~d~i~~~tg~~~~~~~~~~~~---~ 356 (443)
T COG2072 286 PDYAP-----GDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGRE-EEADVIITATGLDANDLSGAAGG---Y 356 (443)
T ss_pred CCCCc-----cccccccccchhhhhhhcccceeeccccccCCcceecCCCcc-ccceEEEecCCCchhheeeeccc---c
Confidence 44333 566666677888999999999999999999999999888887 999999999999973 2221110 0
Q ss_pred ccccccCCCCCCcccceeecCCCCCceEEEcccCCcch----hhhHHHHHHHHHHHHcCCC
Q 009917 389 FQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESISN----LYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 389 l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~----~~~~e~qa~~ia~~l~g~~ 445 (522)
....+ .......|+++...+.||+++++....... ....|.+.++++..+....
T Consensus 357 ~~~~~---~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (443)
T COG2072 357 GGDPW---DKDAPLAYKGLALSGGPNLFLIGGPTKASGGLKAALRAELRITLLADAIAHGR 414 (443)
T ss_pred ccccc---cccccceeccccccCCCceEEecCccCCcccchhHHhhhhhhhHHHHHHHhcc
Confidence 00000 112234688999999999999975544332 3456778888887775433
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=100.00 E-value=9.5e-33 Score=255.28 Aligned_cols=192 Identities=38% Similarity=0.672 Sum_probs=137.8
Q ss_pred EEECCChhHHHHHHHHHhcCCc-eEEEecCCCccccccccccceeecCCccc---eeecCCCCCCC-------CCCCCCC
Q 009917 7 AIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIKTVETTMLQTPKQL---YQFSDYPWPDS-------VTTDFPD 75 (522)
Q Consensus 7 vIIGaG~aGl~~a~~l~~~g~~-v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~ 75 (522)
+|||||++||++|..|++.|++ ++|||+++.+||.|...++...+..|... +.+++++.... +...+++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 99999999999999985555555444432 22222211100 1356789
Q ss_pred hhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEE
Q 009917 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (522)
Q Consensus 76 ~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lv 155 (522)
++++.+|++.+++++++ .++++++|+++++.+ ++|.|+++++ +++.||+||
T Consensus 81 ~~~v~~yl~~~~~~~~l--~i~~~~~V~~v~~~~----------------------~~w~v~~~~~-----~~~~a~~VV 131 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGL--EIRFNTRVESVRRDG----------------------DGWTVTTRDG-----RTIRADRVV 131 (203)
T ss_dssp HHHHHHHHHHHHHHTTG--GEETS--EEEEEEET----------------------TTEEEEETTS------EEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCc--ccccCCEEEEEEEec----------------------cEEEEEEEec-----ceeeeeeEE
Confidence 99999999999999999 699999999999986 4499999886 688999999
Q ss_pred EeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEE
Q 009917 156 LCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (522)
Q Consensus 156 vAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v 235 (522)
+|||.+ +.|++|++| | ..+. ..+|+.++.+ ...+++|+|+|||+|.||+|+|..|++.+. +|+++
T Consensus 132 lAtG~~-~~p~~p~~~---g-~~~~-~~~h~~~~~~------~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~---~V~~~ 196 (203)
T PF13738_consen 132 LATGHY-SHPRIPDIP---G-SAFR-PIIHSADWRD------PEDFKGKRVVVVGGGNSAVDIAYALAKAGK---SVTLV 196 (203)
T ss_dssp E---SS-CSB---S-T---T-GGCS-EEEEGGG-ST------TGGCTTSEEEEE--SHHHHHHHHHHTTTCS---EEEEE
T ss_pred Eeeecc-CCCCccccc---c-cccc-ceEehhhcCC------hhhcCCCcEEEEcChHHHHHHHHHHHhhCC---EEEEE
Confidence 999998 589999998 7 2333 7899999976 356899999999999999999999999864 59999
Q ss_pred Eccccee
Q 009917 236 YRTEHWN 242 (522)
Q Consensus 236 ~r~~~~~ 242 (522)
+|+|.|+
T Consensus 197 ~R~~~~~ 203 (203)
T PF13738_consen 197 TRSPIWY 203 (203)
T ss_dssp ESS----
T ss_pred ecCCCCC
Confidence 9999884
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.97 E-value=1.8e-29 Score=248.15 Aligned_cols=285 Identities=18% Similarity=0.269 Sum_probs=194.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
+||+|||||++||++|..|++.|++|+|||+++ .||.|... .....++.+ +....+.++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~---------~~~~~~~~~-------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTT---------TEVENYPGF-------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeec---------ccccccCCC-------CCCCChHHHHHHH
Confidence 489999999999999999999999999999876 78766531 011111111 1123456889999
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
+++++++++ .+.+ ++|+++++.. +.|.|++.++ .++.||+||+|||.
T Consensus 64 ~~~~~~~gv--~~~~-~~v~~v~~~~----------------------~~~~v~~~~~-----~~~~~d~liiAtG~--- 110 (300)
T TIGR01292 64 KEQAVKFGA--EIIY-EEVIKVDLSD----------------------RPFKVKTGDG-----KEYTAKAVIIATGA--- 110 (300)
T ss_pred HHHHHHcCC--eEEE-EEEEEEEecC----------------------CeeEEEeCCC-----CEEEeCEEEECCCC---
Confidence 999999998 7777 8999998754 4588877654 57999999999994
Q ss_pred CCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccceee
Q 009917 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~~ 243 (522)
.|+.|.+| |.+.|.+..+|...+.. ....++++|+|||+|.+|+|+|..|++.+. +|+++.|.+.+.
T Consensus 111 ~~~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~---~V~~v~~~~~~~- 177 (300)
T TIGR01292 111 SARKLGIP---GEDEFLGRGVSYCATCD------GPFFKNKEVAVVGGGDSAIEEALYLTRIAK---KVTLVHRRDKFR- 177 (300)
T ss_pred CcccCCCC---ChhhcCCccEEEeeecC------hhhcCCCEEEEECCChHHHHHHHHHHhhcC---EEEEEEeCcccC-
Confidence 57778788 77777666666554433 234678999999999999999999998754 599999976521
Q ss_pred cCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccccce
Q 009917 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLT 323 (522)
Q Consensus 244 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 323 (522)
... .
T Consensus 178 ~~~-------------~--------------------------------------------------------------- 181 (300)
T TIGR01292 178 AEK-------------I--------------------------------------------------------------- 181 (300)
T ss_pred cCH-------------H---------------------------------------------------------------
Confidence 000 0
Q ss_pred eccCCcccccccC-CcEEEeecC-ceeEecCc----EEEc---CCC-ceecccEEEEecCCCCCcccccccccccccccc
Q 009917 324 ITVPEKFYDKVEE-GSIILKKSQ-DFSFCEDG----IVVD---GQT-TPLKTDLVILATGFKGDVKLKNIFLSQTFQDYL 393 (522)
Q Consensus 324 ~~~~~~~~~~l~~-g~v~v~~~~-i~~~~~~g----v~~~---dG~-~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~ 393 (522)
+.+.+++ .+|+++.+. +.++.+++ +++. +|+ ..+++|.||+|||++++..+++.. +.
T Consensus 182 ------~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~----~~--- 248 (300)
T TIGR01292 182 ------LLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL----LE--- 248 (300)
T ss_pred ------HHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh----he---
Confidence 0011112 245555443 45554332 4443 232 238999999999999987654322 10
Q ss_pred cCCCCCCcccceeecCCCCCceEEEcccCC--cchhhhHHHHHHHHHHHHc
Q 009917 394 AGSPTEKLPLYREIIHPQIPQLAIIGFSES--ISNLYTSEMRCRWLAELLD 442 (522)
Q Consensus 394 ~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~ia~~l~ 442 (522)
-++++.+..... +.+++||+|++|.... +.....+..|++.+|..+.
T Consensus 249 -~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 249 -LDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred -ecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 022333334443 4568999999997664 3345678888988887764
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=99.96 E-value=1.3e-27 Score=236.76 Aligned_cols=270 Identities=17% Similarity=0.316 Sum_probs=187.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||||||+||..|.+.|+++++||+. ..||.+.... . +.++|. .....+..++.++
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~---------~---~~~~~~----~~~~~~~~~~~~~ 68 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT---------E---VENWPG----DPNDLTGPLLMER 68 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc---------e---ECCCCC----CCCCCCHHHHHHH
Confidence 589999999999999999999999999999964 6787655311 1 111111 1223456788999
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.++++.++. .++++ +|..|+... +.|+++... ..+.||+||+|||.
T Consensus 69 ~~~~~~~~~~--~~~~~-~v~~v~~~~----------------------~~~~v~~~~------~~~~~d~vilAtG~-- 115 (321)
T PRK10262 69 MHEHATKFET--EIIFD-HINKVDLQN----------------------RPFRLTGDS------GEYTCDALIIATGA-- 115 (321)
T ss_pred HHHHHHHCCC--EEEee-EEEEEEecC----------------------CeEEEEecC------CEEEECEEEECCCC--
Confidence 9999999876 56664 577777643 457776432 25899999999994
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccccee
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~ 242 (522)
.|+.|++| |.+.|.+..+|...+.+ .....+|+|+|||+|.+|+|+|..|++.+. +||++.|++.+
T Consensus 116 -~~~~~~i~---g~~~~~~~~v~~~~~~~------~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~---~Vtlv~~~~~~- 181 (321)
T PRK10262 116 -SARYLGLP---SEEAFKGRGVSACATCD------GFFYRNQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGF- 181 (321)
T ss_pred -CCCCCCCC---CHHHcCCCcEEEeecCC------HHHcCCCEEEEECCCHHHHHHHHHHHhhCC---EEEEEEECCcc-
Confidence 57888888 87778888888777655 234689999999999999999999998764 49999997752
Q ss_pred ecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccccc
Q 009917 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (522)
Q Consensus 243 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 322 (522)
+... .
T Consensus 182 -~~~~--------~------------------------------------------------------------------ 186 (321)
T PRK10262 182 -RAEK--------I------------------------------------------------------------------ 186 (321)
T ss_pred -CCCH--------H------------------------------------------------------------------
Confidence 1100 0
Q ss_pred eeccCCcccccccCCcEEEeecC-ceeEecC-----cEEEcCCC-----ceecccEEEEecCCCCCcccccccccccccc
Q 009917 323 TITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQT-----TPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (522)
Q Consensus 323 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----gv~~~dG~-----~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~ 391 (522)
..+.+.+.+++.+|++..+. +.++.++ +|++.+++ +.+++|.||+|+|++|+..+.+. . +.
T Consensus 187 ---~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~---l~- 258 (321)
T PRK10262 187 ---LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-Q---LE- 258 (321)
T ss_pred ---HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-c---cc-
Confidence 00011234566778887765 7777655 36665431 23899999999999999775431 1 11
Q ss_pred cccCCCCCCcccce----eecCCCCCceEEEcccCC
Q 009917 392 YLAGSPTEKLPLYR----EIIHPQIPQLAIIGFSES 423 (522)
Q Consensus 392 ~~~~~~~~~~~ly~----~~~~~~~pnl~~iG~~~~ 423 (522)
...+.+..-. ..+.++.||+|++|.+..
T Consensus 259 ----~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~ 290 (321)
T PRK10262 259 ----LENGYIKVQSGIHGNATQTSIPGVFAAGDVMD 290 (321)
T ss_pred ----ccCCEEEECCCCcccccccCCCCEEECeeccC
Confidence 1111111111 125678999999997653
No 8
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.96 E-value=2.5e-27 Score=246.46 Aligned_cols=307 Identities=14% Similarity=0.138 Sum_probs=190.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccce-------eecCCCCCCCCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLY-------QFSDYPWPDSVTT 71 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 71 (522)
|.++||+|||||++|+++|..|.+.|.+|+|||+++.+||+|.+ +.|...+..+...+ .|..++.+
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~----- 77 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK----- 77 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc-----
Confidence 34589999999999999999999999999999998899999977 66765443322111 11111111
Q ss_pred CCCChhHHHHHH-----------HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEec
Q 009917 72 DFPDHNQVLDYI-----------QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (522)
Q Consensus 72 ~~~~~~~~~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (522)
...+..++.++. ....++.++ .+..+ ++..++. +.+.|...+
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~~~------------------------~~~~v~~~~ 130 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQG-RARFVDP------------------------HTVEVECPD 130 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEecC------------------------CEEEEEeCC
Confidence 112334444433 333344444 33333 3332221 235555433
Q ss_pred CCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHH
Q 009917 141 AKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (522)
Q Consensus 141 ~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~ 220 (522)
|+..++.||+||+||| +.|..|+++ +.+. ..++++.+.... ...+|+|+|||+|.+|+|+|.
T Consensus 131 ---g~~~~~~~d~lviATG---s~p~~p~~~---~~~~--~~v~~~~~~~~~-------~~~~~~v~IiGgG~~g~E~A~ 192 (461)
T PRK05249 131 ---GEVETLTADKIVIATG---SRPYRPPDV---DFDH--PRIYDSDSILSL-------DHLPRSLIIYGAGVIGCEYAS 192 (461)
T ss_pred ---CceEEEEcCEEEEcCC---CCCCCCCCC---CCCC--CeEEcHHHhhch-------hhcCCeEEEECCCHHHHHHHH
Confidence 3335799999999999 467777655 4321 124444443332 245799999999999999999
Q ss_pred HHhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 009917 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300 (522)
Q Consensus 221 ~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (522)
.++..+.+ ||++.|++. ++|..+ ..+ .
T Consensus 193 ~l~~~g~~---Vtli~~~~~-~l~~~d-------~~~--------------------------------~---------- 219 (461)
T PRK05249 193 IFAALGVK---VTLINTRDR-LLSFLD-------DEI--------------------------------S---------- 219 (461)
T ss_pred HHHHcCCe---EEEEecCCC-cCCcCC-------HHH--------------------------------H----------
Confidence 99988754 999999876 444322 000 0
Q ss_pred ccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEe--cCc--EEEcCCCceecccEEEEecCCC
Q 009917 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQTTPLKTDLVILATGFK 375 (522)
Q Consensus 301 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~g--v~~~dG~~~~~~D~VI~aTG~~ 375 (522)
+.+.+.+++.+|+++.+. +.++. +++ +++++|++ +++|.||+|+|++
T Consensus 220 ---------------------------~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~ 271 (461)
T PRK05249 220 ---------------------------DALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKK-IKADCLLYANGRT 271 (461)
T ss_pred ---------------------------HHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCE-EEeCEEEEeecCC
Confidence 001122333456666554 55554 233 44567877 9999999999999
Q ss_pred CCcccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 376 GDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 376 ~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
++..++..... .+ .-++.+.+... ..+.++.||+|++|.+.. +...+.+..|++.+|..+.|.
T Consensus 272 p~~~~l~l~~~-g~----~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 272 GNTDGLNLENA-GL----EADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred ccccCCCchhh-Cc----EecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 99764321000 00 00122223332 334567899999997654 334677999999999999875
No 9
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.95 E-value=5.6e-28 Score=237.48 Aligned_cols=303 Identities=17% Similarity=0.206 Sum_probs=201.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcC--CceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhH
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g--~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (522)
|.+++|||||||++|+.+|+.|.+.. .+++++|+++.. ...|+-......-.+..+
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h----------------------l~~plL~eva~g~l~~~~ 58 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH----------------------LFTPLLYEVATGTLSESE 58 (405)
T ss_pred CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc----------------------ccchhhhhhhcCCCChhh
Confidence 56789999999999999999999974 889999998752 111211111122223345
Q ss_pred HHHHHHHHHHhcCCccceEe-eeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEe
Q 009917 79 VLDYIQSYASHFDLRKHIKF-NRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (522)
Q Consensus 79 ~~~yl~~~~~~~~l~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvA 157 (522)
+.--++..+++.+ ++.| ..+|++|+.++ .+|++.+. ..+.||+||+|
T Consensus 59 i~~p~~~~~~~~~---~v~~~~~~V~~ID~~~------------------------k~V~~~~~-----~~i~YD~LVva 106 (405)
T COG1252 59 IAIPLRALLRKSG---NVQFVQGEVTDIDRDA------------------------KKVTLADL-----GEISYDYLVVA 106 (405)
T ss_pred eeccHHHHhcccC---ceEEEEEEEEEEcccC------------------------CEEEeCCC-----ccccccEEEEe
Confidence 5555566665443 3444 45899999876 57888874 57999999999
Q ss_pred ecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchH-----hhhhccCC----CEEEEEcCCCCHHHHHHHHhhhcCC
Q 009917 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE-----AAANLVKG----KRVTVVGLQKSALDIAMECTTANGL 228 (522)
Q Consensus 158 tG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~-----~~~~~~~g----k~VvVIG~G~sg~dia~~l~~~~~~ 228 (522)
+| +.++.+.+| |..++.-.+-...+-..+... ........ ..|+|||+|+||+|+|.+|++....
T Consensus 107 lG---s~~~~fgi~---G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~ 180 (405)
T COG1252 107 LG---SETNYFGIP---GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHR 180 (405)
T ss_pred cC---CcCCcCCCC---CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHH
Confidence 99 567787777 765542111110000000000 00010111 2699999999999999999975321
Q ss_pred ----------CCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 009917 229 ----------ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIK 298 (522)
Q Consensus 229 ----------~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (522)
.-+|+++.+.|. ++|.+. .++ +..
T Consensus 181 l~~~~~~~~~~~~V~LVea~p~-ILp~~~-----------~~l----------------------------~~~------ 214 (405)
T COG1252 181 LLKKFRVDPSELRVILVEAGPR-ILPMFP-----------PKL----------------------------SKY------ 214 (405)
T ss_pred HhhhhcCCccccEEEEEccCch-hccCCC-----------HHH----------------------------HHH------
Confidence 016999999998 777654 000 011
Q ss_pred hhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecCcEEEcCCCceecccEEEEecCCCCC
Q 009917 299 KKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGD 377 (522)
Q Consensus 299 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~gv~~~dG~~~~~~D~VI~aTG~~~~ 377 (522)
..+.+++-+|++..+. |+++++++|++++|.+.+++|.||||+|.+++
T Consensus 215 -------------------------------a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 215 -------------------------------AERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred -------------------------------HHHHHHHCCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC
Confidence 1134556678888887 99999999999998833999999999999998
Q ss_pred cccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-------cchhhhHHHHHHHHHHHHcCCCCC
Q 009917 378 VKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-------ISNLYTSEMRCRWLAELLDGAVKL 447 (522)
Q Consensus 378 ~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-------~~~~~~~e~qa~~ia~~l~g~~~l 447 (522)
..+.++.+ ...+..++..+-..+..+++||+|++|.+.. +...+.|++|++++++.|..+++-
T Consensus 264 ~~~~~l~~-------~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 264 PLLKDLSG-------LETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred hhhhhcCh-------hhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 54333201 1112345566677788899999999995432 334678999999999988655543
No 10
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.95 E-value=2.8e-27 Score=238.77 Aligned_cols=317 Identities=18% Similarity=0.207 Sum_probs=204.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeecC-----CCCCCCCCCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSD-----YPWPDSVTTDF 73 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 73 (522)
|..+|++|||+|++|..+|.++++.|.++.++|+...+||+|.+ |.|+..+...+..+.... +-+... ..-
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~--~~~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE--VPK 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecC--CCC
Confidence 34689999999999999999999999999999998889999999 899888766655542111 111100 001
Q ss_pred CChhHHHHHHHHHHHhcCCccceEeee-eEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeC
Q 009917 74 PDHNQVLDYIQSYASHFDLRKHIKFNR-KVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (522)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~l~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d 152 (522)
....++.+..+...+...-...-.+.. .|.-+.-.. .|. +..+|.+... ..+++++|
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a-----------------~f~--~~~~v~V~~~---~~~~~~a~ 137 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA-----------------RFV--DPHTVEVTGE---DKETITAD 137 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE-----------------EEC--CCCEEEEcCC---CceEEEeC
Confidence 123344444433333221100001111 222222111 000 1235665553 23689999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCce
Q 009917 153 FVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (522)
Q Consensus 153 ~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~V 232 (522)
++||||| +.|..|++| |++.- .++.+.+... ...-+|+++|||+|..|+|+|..++..+.+ |
T Consensus 138 ~iiIATG---S~p~~~~~~---~~~~~--~~~~s~~~l~-------~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~---V 199 (454)
T COG1249 138 NIIIATG---SRPRIPPGP---GIDGA--RILDSSDALF-------LLELPKSLVIVGGGYIGLEFASVFAALGSK---V 199 (454)
T ss_pred EEEEcCC---CCCcCCCCC---CCCCC--eEEechhhcc-------cccCCCEEEEECCCHHHHHHHHHHHHcCCc---E
Confidence 9999999 578888877 54432 2444444222 125689999999999999999999999875 9
Q ss_pred EEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCC
Q 009917 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (522)
Q Consensus 233 t~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 312 (522)
|++.|.+. ++|..+ ..
T Consensus 200 Tiie~~~~-iLp~~D---------------------------------------~e------------------------ 215 (454)
T COG1249 200 TVVERGDR-ILPGED---------------------------------------PE------------------------ 215 (454)
T ss_pred EEEecCCC-CCCcCC---------------------------------------HH------------------------
Confidence 99999998 777654 00
Q ss_pred cccccccccceeccCCcccccccCCcEEEeecC-ceeEecC----cEEEcCCCc-eecccEEEEecCCCCCccccccccc
Q 009917 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQTT-PLKTDLVILATGFKGDVKLKNIFLS 386 (522)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----gv~~~dG~~-~~~~D~VI~aTG~~~~~~l~~~~~~ 386 (522)
+++.+.+.++++.+++..+. +.++..+ .+.+++|.. .+++|.|++|||.+|+.+-+.
T Consensus 216 -------------i~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~Lg---- 278 (454)
T COG1249 216 -------------ISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLG---- 278 (454)
T ss_pred -------------HHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCC----
Confidence 11112233445567777665 5555433 267777762 288999999999999965221
Q ss_pred ccccccccC-CCCCCcccceeecCCCCCceEEEccc-CCcchhhhHHHHHHHHHHHHcC
Q 009917 387 QTFQDYLAG-SPTEKLPLYREIIHPQIPQLAIIGFS-ESISNLYTSEMRCRWLAELLDG 443 (522)
Q Consensus 387 ~~l~~~~~~-~~~~~~~ly~~~~~~~~pnl~~iG~~-~~~~~~~~~e~qa~~ia~~l~g 443 (522)
|++..+. ++.+.+... ..+.++.||+|++|.+ ..+...+.+..|++.++..+.|
T Consensus 279 --Le~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 279 --LENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred --hhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 2222221 223444555 6777889999999977 4555678999999999999886
No 11
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.95 E-value=1.5e-26 Score=242.64 Aligned_cols=175 Identities=22% Similarity=0.313 Sum_probs=138.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.+||+|||||++|+++|..|++.|++++||++ .+||.|...+. .-.+. ...+..+.++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~---------~~~~~--------~~~~~~~~~l~~~ 271 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMG---------IENFI--------SVPETEGPKLAAA 271 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCc---------ccccC--------CCCCCCHHHHHHH
Confidence 36999999999999999999999999999986 48998864210 00011 1123466789999
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+...++++++ .++++++|.+++..+ +.|.|++.++ .++.||.||+|||.
T Consensus 272 l~~~~~~~gv--~i~~~~~V~~I~~~~----------------------~~~~V~~~~g-----~~i~a~~vViAtG~-- 320 (517)
T PRK15317 272 LEEHVKEYDV--DIMNLQRASKLEPAA----------------------GLIEVELANG-----AVLKAKTVILATGA-- 320 (517)
T ss_pred HHHHHHHCCC--EEEcCCEEEEEEecC----------------------CeEEEEECCC-----CEEEcCEEEECCCC--
Confidence 9999999998 888899999998853 4588887665 46899999999995
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.|+.|.+| |.+.|.+..+|.....+ ...++||+|+|||+|.+|+|+|..|+..+. +||++.|.+.
T Consensus 321 -~~r~~~ip---G~~~~~~~~v~~~~~~~------~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~---~Vtlv~~~~~ 385 (517)
T PRK15317 321 -RWRNMNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVK---HVTVLEFAPE 385 (517)
T ss_pred -CcCCCCCC---CHHHhcCceEEEeeccC------chhcCCCEEEEECCCHHHHHHHHHHHhcCC---EEEEEEECcc
Confidence 46778888 87778877777654443 234689999999999999999999998764 5999998765
No 12
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.95 E-value=3.3e-27 Score=242.95 Aligned_cols=295 Identities=17% Similarity=0.180 Sum_probs=187.9
Q ss_pred CcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (522)
++|||||||++|+++|..|++. +.+|+|||+++.++ |.....|...........+...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--------------------~~~~~lp~~~~~~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--------------------FANCALPYYIGEVVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--------------------cccCCcchhhcCccCCHHHccc
Confidence 4899999999999999999986 57899999987643 1100001000011111222222
Q ss_pred H-HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecc
Q 009917 82 Y-IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (522)
Q Consensus 82 y-l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~ 160 (522)
+ .+.+.++.++ .++++++|++|+.++ ..|.+.++.+++..++.||+||+|||
T Consensus 62 ~~~~~~~~~~~i--~v~~~~~V~~Id~~~------------------------~~v~~~~~~~~~~~~~~yd~lviAtG- 114 (438)
T PRK13512 62 YTPEKFYDRKQI--TVKTYHEVIAINDER------------------------QTVTVLNRKTNEQFEESYDKLILSPG- 114 (438)
T ss_pred CCHHHHHHhCCC--EEEeCCEEEEEECCC------------------------CEEEEEECCCCcEEeeecCEEEECCC-
Confidence 2 2344566777 788889999998764 35766665434445689999999999
Q ss_pred cCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHh-hhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA-AANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 161 ~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~-~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
+.|+.|.++ +. .++...++.+..... ......+++|+|||+|.+|+|+|..|++.+. +||++.|++
T Consensus 115 --s~~~~~~~~---~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~ 181 (438)
T PRK13512 115 --ASANSLGFE---SD-----ITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGL---HPTLIHRSD 181 (438)
T ss_pred --CCCCCCCCC---CC-----CeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCC---cEEEEeccc
Confidence 456776544 21 133322222110000 0012357899999999999999999998765 499999987
Q ss_pred ceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCccccccc
Q 009917 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (522)
Q Consensus 240 ~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 319 (522)
. +++... ..
T Consensus 182 ~-l~~~~d-------~~--------------------------------------------------------------- 190 (438)
T PRK13512 182 K-INKLMD-------AD--------------------------------------------------------------- 190 (438)
T ss_pred c-cchhcC-------HH---------------------------------------------------------------
Confidence 6 344321 00
Q ss_pred ccceeccCCcccccccCCcEEEeecC-ceeEecCcEEEcCCCceecccEEEEecCCCCCcccccccccccccccccCCCC
Q 009917 320 SCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPT 398 (522)
Q Consensus 320 ~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~gv~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~~~~~ 398 (522)
+...+.+.+++.+|+++.+. +.++++..|++++|++ +++|.||+|+|++++.++++... +.-++.
T Consensus 191 ------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~-~~~D~vl~a~G~~pn~~~l~~~g-------l~~~~~ 256 (438)
T PRK13512 191 ------MNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKV-EHYDMIIEGVGTHPNSKFIESSN-------IKLDDK 256 (438)
T ss_pred ------HHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCE-EEeCEEEECcCCCcChHHHHhcC-------cccCCC
Confidence 00011223445567777665 7788777888988988 99999999999999976543211 101223
Q ss_pred CCcccceeecCCCCCceEEEcccCC-----------cchhhhHHHHHHHHHHHHcCC
Q 009917 399 EKLPLYREIIHPQIPQLAIIGFSES-----------ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 399 ~~~~ly~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~ia~~l~g~ 444 (522)
+.+..... +.++.||+|++|.+.. ....+.+..||+.++..+.|.
T Consensus 257 G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 257 GFIPVNDK-FETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred CcEEECCC-cccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 33444433 3468999999996542 112345788999999998874
No 13
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=7.9e-27 Score=242.63 Aligned_cols=305 Identities=16% Similarity=0.195 Sum_probs=187.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeecC----CCCCCCCCCCCCCh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSD----YPWPDSVTTDFPDH 76 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 76 (522)
.+||+||||||+|+++|..|++.|.+|+|+|+.. +||+|.+ ++|+..+......+.+.. +.+.. .......
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~--~~~~~~~ 80 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKA--ENVGIDF 80 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCccc--CCCccCH
Confidence 4799999999999999999999999999999976 9999987 788766554443332211 11110 0112344
Q ss_pred hHHHHHHHHHHH-----------hcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCc
Q 009917 77 NQVLDYIQSYAS-----------HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (522)
Q Consensus 77 ~~~~~yl~~~~~-----------~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~ 145 (522)
.++.+|...+++ +.++ .+..+ ++..++. ..+.|...++ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~~~~------------------------~~~~v~~~~~--~- 130 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIRG-EAKLVDP------------------------NTVRVMTEDG--E- 130 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC------------------------CEEEEecCCC--c-
Confidence 666667544433 3343 33333 3333321 2244433222 1
Q ss_pred eeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCce-EEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhh
Q 009917 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGK-VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (522)
Q Consensus 146 ~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~-~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~ 224 (522)
+++.||+||+|||+ .|..| | |.+. .+. ++++.+.... ...+|+|+|||+|.+|+|+|..+++
T Consensus 131 -~~~~~d~lViAtGs---~p~~~--p---g~~~-~~~~v~~~~~~~~~-------~~~~~~vvVvGgG~~g~E~A~~l~~ 193 (462)
T PRK06416 131 -QTYTAKNIILATGS---RPREL--P---GIEI-DGRVIWTSDEALNL-------DEVPKSLVVIGGGYIGVEFASAYAS 193 (462)
T ss_pred -EEEEeCEEEEeCCC---CCCCC--C---CCCC-CCCeEEcchHhhCc-------cccCCeEEEECCCHHHHHHHHHHHH
Confidence 57999999999995 45544 3 4432 233 3343333221 2356899999999999999999998
Q ss_pred hcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhcccc
Q 009917 225 ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLA 304 (522)
Q Consensus 225 ~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (522)
.+. +||++.|.+. ++|... .. ...
T Consensus 194 ~g~---~Vtli~~~~~-~l~~~~-------~~--------------------------------~~~------------- 217 (462)
T PRK06416 194 LGA---EVTIVEALPR-ILPGED-------KE--------------------------------ISK------------- 217 (462)
T ss_pred cCC---eEEEEEcCCC-cCCcCC-------HH--------------------------------HHH-------------
Confidence 765 4999999876 445422 00 000
Q ss_pred ccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecC--c--EEEcCC---CceecccEEEEecCCCC
Q 009917 305 KFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDGQ---TTPLKTDLVILATGFKG 376 (522)
Q Consensus 305 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--g--v~~~dG---~~~~~~D~VI~aTG~~~ 376 (522)
.+.+.+++.+|+++.+. +.++.++ + +.+++| ++ +++|.||+|||++|
T Consensus 218 ------------------------~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~-i~~D~vi~a~G~~p 272 (462)
T PRK06416 218 ------------------------LAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEET-LEADYVLVAVGRRP 272 (462)
T ss_pred ------------------------HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEE-EEeCEEEEeeCCcc
Confidence 01122334456666664 6666543 3 344555 55 89999999999999
Q ss_pred CcccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCCC
Q 009917 377 DVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 377 ~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~~ 445 (522)
+..++.. ++.......+.+.... .+.++.||+|++|.+.. +.....+..|++.+|..+.|..
T Consensus 273 ~~~~l~l------~~~gl~~~~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~ 335 (462)
T PRK06416 273 NTENLGL------EELGVKTDRGFIEVDE-QLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP 335 (462)
T ss_pred CCCCCCc------hhcCCeecCCEEeECC-CCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 8765321 1100101122222222 23478899999997654 3356788999999999998753
No 14
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.95 E-value=7.3e-27 Score=240.86 Aligned_cols=301 Identities=17% Similarity=0.202 Sum_probs=184.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceee----cCCCCCCCCCCCCCCh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDSVTTDFPDH 76 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 76 (522)
++||+||||||+|++||..+++.|.+|+|||+. .+||+|.+ |.|+..+..+...+.. ..+.++.. ...-...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQN-LENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccC-CcCccCH
Confidence 479999999999999999999999999999995 69999987 7777544333222111 11111100 0000122
Q ss_pred hHHHHH-----------HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCc
Q 009917 77 NQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (522)
Q Consensus 77 ~~~~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~ 145 (522)
.++.++ +....++.++ .+..++.+. .. ..+|++ ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~~----~~-----------------------~~~v~v-~~---- 125 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHARF----TK-----------------------DGTVEV-NG---- 125 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE----cc-----------------------CCEEEE-CC----
Confidence 333333 2233333444 455554321 11 124555 22
Q ss_pred eeEEEeCEEEEeecccCCCCCCC-CCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhh
Q 009917 146 TEVHQVDFVILCVGRFSDVPNIP-EFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (522)
Q Consensus 146 ~~~~~~d~lvvAtG~~s~~p~~P-~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~ 224 (522)
.++.||+||+||| +.|+.| .+| |.+. .+++.++..+ ...+++|+|||+|.+|+|+|..|+.
T Consensus 126 -~~~~~d~vIiAtG---s~p~~p~~i~---g~~~----~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~ 187 (450)
T TIGR01421 126 -RDYTAPHILIATG---GKPSFPENIP---GAEL----GTDSDGFFAL-------EELPKRVVIVGAGYIAVELAGVLHG 187 (450)
T ss_pred -EEEEeCEEEEecC---CCCCCCCCCC---CCce----eEcHHHhhCc-------cccCCeEEEECCCHHHHHHHHHHHH
Confidence 4689999999999 467888 787 6542 1233333221 1247899999999999999999998
Q ss_pred hcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhcccc
Q 009917 225 ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLA 304 (522)
Q Consensus 225 ~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (522)
.+.+ ||++.|.+. +++..+ ..+ ..
T Consensus 188 ~g~~---Vtli~~~~~-il~~~d-------~~~--------------------------------~~------------- 211 (450)
T TIGR01421 188 LGSE---THLVIRHER-VLRSFD-------SMI--------------------------------SE------------- 211 (450)
T ss_pred cCCc---EEEEecCCC-CCcccC-------HHH--------------------------------HH-------------
Confidence 7654 999999876 444332 000 00
Q ss_pred ccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecC-----cEEEcCCCceecccEEEEecCCCCCc
Q 009917 305 KFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED-----GIVVDGQTTPLKTDLVILATGFKGDV 378 (522)
Q Consensus 305 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~-----gv~~~dG~~~~~~D~VI~aTG~~~~~ 378 (522)
.+.+.+++.+|+++.+. ++++..+ .+++++|++.+++|.||+|+|++|+.
T Consensus 212 ------------------------~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 212 ------------------------TITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred ------------------------HHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 01122334456666554 5555432 25667783339999999999999997
Q ss_pred ccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcC
Q 009917 379 KLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDG 443 (522)
Q Consensus 379 ~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g 443 (522)
.++...... + .-+..+.+.... .+.++.||+|++|.+.. ....+.+..|++.++..+.+
T Consensus 268 ~~l~l~~~g-~----~~~~~G~i~vd~-~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 268 KGLGLENVG-I----KLNEKGQIIVDE-YQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred ccCCccccC-c----EECCCCcEEeCC-CCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 643210000 0 001222232322 34568999999997554 34567889999999998875
No 15
>PLN02507 glutathione reductase
Probab=99.95 E-value=1.1e-26 Score=241.80 Aligned_cols=306 Identities=17% Similarity=0.174 Sum_probs=188.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEec---------CCCccccccc--cccceeecCCcccee----ecCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA---------RSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPD 67 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~---------~~~~Gg~w~~--~~~~~~~~~~~~~~~----~~~~~~~~ 67 (522)
.+||+||||||+|+.+|..+.+.|.+|+|||+ ...+||+|.+ |+|...+..+...+. ...+.+..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 37899999999999999999999999999996 3579999988 888777644433211 01111110
Q ss_pred CCCCCCCChhHHHHHHHHHHHh-----------cCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEE
Q 009917 68 SVTTDFPDHNQVLDYIQSYASH-----------FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (522)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (522)
. ...-....++.++.....++ .++ .+. ..++..++. ..+.|
T Consensus 105 ~-~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~i-~g~a~~vd~------------------------~~v~V 156 (499)
T PLN02507 105 N-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGV--KLY-EGEGKIVGP------------------------NEVEV 156 (499)
T ss_pred C-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEE-EEEEEEecC------------------------CEEEE
Confidence 0 00011233444333333222 222 111 223333332 23666
Q ss_pred EEecCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHH
Q 009917 137 AVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (522)
Q Consensus 137 ~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~ 216 (522)
+..+ |+..++.||+||+||| +.|..|.+| |.+. ..++.+... ....+|+|+|||+|.+|+
T Consensus 157 ~~~~---g~~~~~~~d~LIIATG---s~p~~p~ip---G~~~----~~~~~~~~~-------l~~~~k~vvVIGgG~ig~ 216 (499)
T PLN02507 157 TQLD---GTKLRYTAKHILIATG---SRAQRPNIP---GKEL----AITSDEALS-------LEELPKRAVVLGGGYIAV 216 (499)
T ss_pred EeCC---CcEEEEEcCEEEEecC---CCCCCCCCC---Cccc----eechHHhhh-------hhhcCCeEEEECCcHHHH
Confidence 6544 3335689999999999 467788888 6542 223222222 113478999999999999
Q ss_pred HHHHHHhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHH
Q 009917 217 DIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEAD 296 (522)
Q Consensus 217 dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (522)
|+|..++..+. +||++.|.+. +++..+ .- +...
T Consensus 217 E~A~~l~~~G~---~Vtli~~~~~-~l~~~d-------~~--------------------------------~~~~---- 249 (499)
T PLN02507 217 EFASIWRGMGA---TVDLFFRKEL-PLRGFD-------DE--------------------------------MRAV---- 249 (499)
T ss_pred HHHHHHHHcCC---eEEEEEecCC-cCcccC-------HH--------------------------------HHHH----
Confidence 99999998765 4999999875 333321 00 0000
Q ss_pred HhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--Cc--EEEcCCCceecccEEEEe
Q 009917 297 IKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILA 371 (522)
Q Consensus 297 ~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~g--v~~~dG~~~~~~D~VI~a 371 (522)
+.+.+++.+|+++.+. +.++.. ++ +.+.+|++ +++|.||+|
T Consensus 250 ---------------------------------l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~-i~~D~vl~a 295 (499)
T PLN02507 250 ---------------------------------VARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEE-FVADVVLFA 295 (499)
T ss_pred ---------------------------------HHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcE-EEcCEEEEe
Confidence 1122334456666654 666643 23 55667877 999999999
Q ss_pred cCCCCCccccccccccccccccc-CCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 372 TGFKGDVKLKNIFLSQTFQDYLA-GSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 372 TG~~~~~~l~~~~~~~~l~~~~~-~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
+|++|+..++.. ++... -+..+.+....+ +.++.||+|++|.+.. ....+.+..|++.++..+.|.
T Consensus 296 ~G~~pn~~~l~l------~~~gl~~~~~G~I~Vd~~-~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 296 TGRAPNTKRLNL------EAVGVELDKAGAVKVDEY-SRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred ecCCCCCCCCCc------hhhCcEECCCCcEecCCC-CcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 999999764321 11000 012233333333 3468999999997654 334678999999999998764
No 16
>PRK06116 glutathione reductase; Validated
Probab=99.95 E-value=1.2e-26 Score=240.20 Aligned_cols=300 Identities=18% Similarity=0.228 Sum_probs=186.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceee-c----CCCCCCCCCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF-S----DYPWPDSVTTDFPD 75 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~ 75 (522)
++||+||||||+|+++|..|++.|.+|+|||+. .+||+|.+ |+|...+......... . .+.+... .. -..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~-~~~ 80 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-EN-KFD 80 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CC-CcC
Confidence 579999999999999999999999999999985 79999987 7777544332221110 0 0001000 00 011
Q ss_pred hhHHHHH-----------HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCC
Q 009917 76 HNQVLDY-----------IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH 144 (522)
Q Consensus 76 ~~~~~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g 144 (522)
...+.++ ++...++.++ .+..+ ++..++. .+|++ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~v~~--------------------------~~v~~-~g--- 127 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGV--DLIEG-FARFVDA--------------------------HTVEV-NG--- 127 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC--------------------------CEEEE-CC---
Confidence 1222222 2233333444 44433 3433321 34666 33
Q ss_pred ceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhh
Q 009917 145 STEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (522)
Q Consensus 145 ~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~ 224 (522)
+++.||+||+||| +.|+.|.+| |.+. ++++.++... ...+++|+|||+|.+|+|+|..+++
T Consensus 128 --~~~~~d~lViATG---s~p~~p~i~---g~~~----~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~l~~ 188 (450)
T PRK06116 128 --ERYTADHILIATG---GRPSIPDIP---GAEY----GITSDGFFAL-------EELPKRVAVVGAGYIAVEFAGVLNG 188 (450)
T ss_pred --EEEEeCEEEEecC---CCCCCCCCC---Ccce----eEchhHhhCc-------cccCCeEEEECCCHHHHHHHHHHHH
Confidence 5799999999999 467888888 6542 4444443321 2347899999999999999999998
Q ss_pred hcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhcccc
Q 009917 225 ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLA 304 (522)
Q Consensus 225 ~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (522)
.+. +||++.|++. +++... ..
T Consensus 189 ~g~---~Vtlv~~~~~-~l~~~~-------~~------------------------------------------------ 209 (450)
T PRK06116 189 LGS---ETHLFVRGDA-PLRGFD-------PD------------------------------------------------ 209 (450)
T ss_pred cCC---eEEEEecCCC-CccccC-------HH------------------------------------------------
Confidence 765 4999999875 333221 00
Q ss_pred ccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--Cc---EEEcCCCceecccEEEEecCCCCCc
Q 009917 305 KFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG---IVVDGQTTPLKTDLVILATGFKGDV 378 (522)
Q Consensus 305 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~g---v~~~dG~~~~~~D~VI~aTG~~~~~ 378 (522)
+...+.+.+++.+|+++.+. +.++.. ++ +.+.+|++ +++|.||+|||++|+.
T Consensus 210 ---------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~-i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 210 ---------------------IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGET-LTVDCLIWAIGREPNT 267 (450)
T ss_pred ---------------------HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcE-EEeCEEEEeeCCCcCC
Confidence 00011122344456666554 666643 22 56678887 9999999999999987
Q ss_pred ccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 379 KLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 379 ~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
..+..-.. . +.-+..+.+....+ +.++.||+|++|.+.. ....+.+..|++.+|..+.|.
T Consensus 268 ~~l~l~~~-g----~~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 268 DGLGLENA-G----VKLNEKGYIIVDEY-QNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred CCCCchhc-C----ceECCCCcEecCCC-CCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 63211000 0 00012233333333 3468999999997653 334678899999999998874
No 17
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.95 E-value=9.7e-27 Score=240.38 Aligned_cols=304 Identities=15% Similarity=0.153 Sum_probs=185.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCC-Cccccccc--cccceeecCCccceeecCCCCCCCCCCCCCChh
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGGAWIK--TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~-~~Gg~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (522)
|+++||+|||||++|+++|..|++.|.+|+|||+.+ .+||+|.. +.|...+-.+... ...+.......+
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~--------~~~~~~~~~~~~ 72 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ--------HTDFVRAIQRKN 72 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhcc--------CCCHHHHHHHHH
Confidence 788999999999999999999999999999999976 48999876 5554332111100 000000001112
Q ss_pred HHHHHHHH-----HHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeC
Q 009917 78 QVLDYIQS-----YASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (522)
Q Consensus 78 ~~~~yl~~-----~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d 152 (522)
++.++++. ..+..++ .+.. .++..++. +.+.|...++ ..++.||
T Consensus 73 ~~~~~~~~~~~~~~~~~~gv--~~~~-g~~~~i~~------------------------~~~~v~~~~g----~~~~~~d 121 (441)
T PRK08010 73 EVVNFLRNKNFHNLADMPNI--DVID-GQAEFINN------------------------HSLRVHRPEG----NLEIHGE 121 (441)
T ss_pred HHHHHHHHhHHHHHhhcCCc--EEEE-EEEEEecC------------------------CEEEEEeCCC----eEEEEeC
Confidence 23333322 1111132 2222 23433332 2355655443 1368999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCce
Q 009917 153 FVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (522)
Q Consensus 153 ~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~V 232 (522)
+||+||| +.|..|++| |.+.+.+ ++++.++... ...+++|+|||+|.+|+|+|..++..+. +|
T Consensus 122 ~lviATG---s~p~~p~i~---G~~~~~~-v~~~~~~~~~-------~~~~~~v~ViGgG~~g~E~A~~l~~~g~---~V 184 (441)
T PRK08010 122 KIFINTG---AQTVVPPIP---GITTTPG-VYDSTGLLNL-------KELPGHLGILGGGYIGVEFASMFANFGS---KV 184 (441)
T ss_pred EEEEcCC---CcCCCCCCC---CccCCCC-EEChhHhhcc-------cccCCeEEEECCCHHHHHHHHHHHHCCC---eE
Confidence 9999999 467888888 7765554 5554444331 2457899999999999999999998765 49
Q ss_pred EEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCC
Q 009917 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (522)
Q Consensus 233 t~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 312 (522)
|++.|++. ++|... ..+ .
T Consensus 185 tli~~~~~-~l~~~~-------~~~--------------------------------~---------------------- 202 (441)
T PRK08010 185 TILEAASL-FLPRED-------RDI--------------------------------A---------------------- 202 (441)
T ss_pred EEEecCCC-CCCCcC-------HHH--------------------------------H----------------------
Confidence 99999775 555432 000 0
Q ss_pred cccccccccceeccCCcccccccCCcEEEeecC-ceeEecC--cEEEc-CCCceecccEEEEecCCCCCccccccccccc
Q 009917 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIVVD-GQTTPLKTDLVILATGFKGDVKLKNIFLSQT 388 (522)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--gv~~~-dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~ 388 (522)
..+.+.+++.+|+++.+. +.+++.+ ++.+. ++.+ +++|.||+|+|.+|+..++......
T Consensus 203 ---------------~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~-i~~D~vl~a~G~~pn~~~l~~~~~g- 265 (441)
T PRK08010 203 ---------------DNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ-LAVDALLIASGRQPATASLHPENAG- 265 (441)
T ss_pred ---------------HHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCe-EEeCEEEEeecCCcCCCCcCchhcC-
Confidence 001123444456666554 6666532 34332 2334 8999999999999997542210000
Q ss_pred ccccccCCCCCCcccceeecCCCCCceEEEcccCCc-chhhhHHHHHHHHHHHHcCC
Q 009917 389 FQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-SNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 389 l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~ 444 (522)
+.-++.+.+..... +.++.||+|++|.+... ...+.+..|++.++..+.|.
T Consensus 266 ----l~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 266 ----IAVNERGAIVVDKY-LHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred ----cEECCCCcEEECCC-cccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 00012233333333 35679999999976553 44577888999999988773
No 18
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.95 E-value=2e-27 Score=234.00 Aligned_cols=226 Identities=21% Similarity=0.324 Sum_probs=140.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcC-CceEEEecCCCccccccc--cccceeecCCc-----------cceeecCCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK--TVETTMLQTPK-----------QLYQFSDYPWPDS 68 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g-~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~-----------~~~~~~~~~~~~~ 68 (522)
..|+++||.||++|+.|..|.+.+ .++.+||+.+.+ .|.. ..++.++++|. .-|+|..+-....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 368999999999999999999975 899999998765 5887 57888887753 1122211110000
Q ss_pred -------CCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecC
Q 009917 69 -------VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (522)
Q Consensus 69 -------~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (522)
....+|++.++.+|+++++++++. .++|+++|++|++....+ ...|.|++++
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~~------------------~~~~~V~~~~- 138 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDGD------------------EDLFRVTTRD- 138 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEETT------------------EEEEEEEEEE-
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCCC------------------ccEEEEEEee-
Confidence 035678999999999999999974 699999999999976100 1359999976
Q ss_pred CCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCcc--CceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHH
Q 009917 142 KNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAF--HGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIA 219 (522)
Q Consensus 142 ~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f--~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia 219 (522)
.+|...++.++.||+|+| ..|.+|+.. +.+ ...++||++|.... ....++++|+|||+|.||.|++
T Consensus 139 ~~g~~~~~~ar~vVla~G---~~P~iP~~~-----~~~~~~~~v~Hss~~~~~~----~~~~~~~~V~VVGgGQSAAEi~ 206 (341)
T PF13434_consen 139 SDGDGETYRARNVVLATG---GQPRIPEWF-----QDLPGSPRVFHSSEYLSRI----DQSLAGKRVAVVGGGQSAAEIF 206 (341)
T ss_dssp TTS-EEEEEESEEEE-------EE---GGG-----GGGTT-TTEEEGGGHHHHH----T-----EEEEEE-SSHHHHHHH
T ss_pred cCCCeeEEEeCeEEECcC---CCCCCCcch-----hhcCCCCCEEEehHhhhcc----ccccCCCeEEEECCcHhHHHHH
Confidence 446678999999999999 578998743 222 36799999996522 2357889999999999999999
Q ss_pred HHHhhhcCCCCceEEEEcccceeecCCCCCCCch-hhHHHHHHHHHhhcC
Q 009917 220 MECTTANGLENPCTVLYRTEHWNIPDYFPWGFPL-AYLYLNRFAELLVHK 268 (522)
Q Consensus 220 ~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~-~~~~~~r~~~~~~~~ 268 (522)
..|...+.. .+|+++.|++. +.|... .|+ ..++...+.+.+...
T Consensus 207 ~~L~~~~~~-~~V~~i~R~~~-~~~~d~---s~f~ne~f~P~~v~~f~~l 251 (341)
T PF13434_consen 207 LDLLRRGPE-AKVTWISRSPG-FFPMDD---SPFVNEIFSPEYVDYFYSL 251 (341)
T ss_dssp HHHHHH-TT-EEEEEEESSSS--EB-------CCHHGGGSHHHHHHHHTS
T ss_pred HHHHhCCCC-cEEEEEECCCc-cCCCcc---ccchhhhcCchhhhhhhcC
Confidence 999998653 56999999987 555543 333 233344444444433
No 19
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.95 E-value=1.6e-26 Score=238.71 Aligned_cols=302 Identities=17% Similarity=0.197 Sum_probs=186.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCcccee----ecCCCCCCCCCCCCCCh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDFPDH 76 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (522)
++||+||||||+|++||..+++.|.+|+|+|+ +.+||+|.+ |.|...+..++.... +..+..... ..-...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG--KARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC--CCCcCH
Confidence 47999999999999999999999999999998 479999987 788765533322211 111111100 000111
Q ss_pred -----------hHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCc
Q 009917 77 -----------NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (522)
Q Consensus 77 -----------~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~ 145 (522)
.++.++++...++.++ .+..+ ++..++... ..|. .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~v~~~~------------------------v~v~-~~g---- 126 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGV--ELLEG-RARLVGPNT------------------------VEVL-QDG---- 126 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEE-EEEEecCCE------------------------EEEe-cCC----
Confidence 1233445555555565 44433 555554321 2332 222
Q ss_pred eeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhh
Q 009917 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (522)
Q Consensus 146 ~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~ 225 (522)
.++.||+||+||| +.|..|++| |.+. .+.+.+... ....+|+|+|||+|.+|+|+|..++..
T Consensus 127 -~~~~~d~lIiATG---s~p~~p~i~---G~~~----~~~~~~~~~-------l~~~~~~vvVIGgG~~g~E~A~~l~~~ 188 (446)
T TIGR01424 127 -TTYTAKKILIAVG---GRPQKPNLP---GHEL----GITSNEAFH-------LPTLPKSILILGGGYIAVEFAGIWRGL 188 (446)
T ss_pred -eEEEcCEEEEecC---CcCCCCCCC---Cccc----eechHHhhc-------ccccCCeEEEECCcHHHHHHHHHHHHc
Confidence 4689999999999 567888888 6542 222222211 113478999999999999999999987
Q ss_pred cCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccc
Q 009917 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (522)
Q Consensus 226 ~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (522)
+. +|+++.+.+. ++|... .- +..
T Consensus 189 G~---~Vtli~~~~~-~l~~~d-------~~--------------------------------~~~-------------- 211 (446)
T TIGR01424 189 GV---QVTLIYRGEL-ILRGFD-------DD--------------------------------MRA-------------- 211 (446)
T ss_pred CC---eEEEEEeCCC-CCcccC-------HH--------------------------------HHH--------------
Confidence 65 4999998776 333321 00 000
Q ss_pred cCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--Cc--EEEcCCCceecccEEEEecCCCCCccc
Q 009917 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (522)
Q Consensus 306 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~g--v~~~dG~~~~~~D~VI~aTG~~~~~~l 380 (522)
.+.+.+++.+|+++.+. +.+++. ++ +.+.+|++ +++|.||+|||++|+...
T Consensus 212 -----------------------~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~viva~G~~pn~~~ 267 (446)
T TIGR01424 212 -----------------------LLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEE-IVADVVLFATGRSPNTKG 267 (446)
T ss_pred -----------------------HHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcE-eecCEEEEeeCCCcCCCc
Confidence 01122334456666554 556642 22 55667887 999999999999998653
Q ss_pred ccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 381 KNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
+...... ++ . +..+.+..... +.++.||+|++|.+.. ....+.+..|++.++..+.|.
T Consensus 268 l~l~~~g-~~---~-~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 268 LGLEAAG-VE---L-NDAGAIAVDEY-SRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred CCccccC-eE---E-CCCCcEEeCCC-CccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 2110000 00 0 12222333333 3568999999997654 334568899999999988763
No 20
>PRK14694 putative mercuric reductase; Provisional
Probab=99.95 E-value=4.5e-26 Score=236.76 Aligned_cols=310 Identities=17% Similarity=0.229 Sum_probs=188.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceee-cCCCCCCCCC--CCCCChh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF-SDYPWPDSVT--TDFPDHN 77 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~ 77 (522)
++||+|||||+||+++|..|++.|.+|+|||+. .+||+|.+ |.|...+......+.. ...++..... ..-.+..
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS 84 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence 479999999999999999999999999999986 79999987 5555443222222111 1111100000 0112345
Q ss_pred HHHHHHHHHHHhcC-------Ccc--ceEe-eeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCcee
Q 009917 78 QVLDYIQSYASHFD-------LRK--HIKF-NRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (522)
Q Consensus 78 ~~~~yl~~~~~~~~-------l~~--~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~ 147 (522)
++.++.++..+.+. +.+ .+.+ ..+|..++. ..|.|++.++ ...
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~------------------------~~~~V~~~~g---~~~ 137 (468)
T PRK14694 85 ALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE------------------------RTLTVTLNDG---GEQ 137 (468)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecC------------------------CEEEEEecCC---CeE
Confidence 55555555444321 111 2222 234444432 3488888664 235
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcC
Q 009917 148 VHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227 (522)
Q Consensus 148 ~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~ 227 (522)
+++||+||+||| +.|+.|++| |.+.+ ..+++.+... ....+++|+|||+|.+|+|+|..|++.+.
T Consensus 138 ~~~~d~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~~~-------l~~~~~~vvViG~G~~G~E~A~~l~~~g~ 202 (468)
T PRK14694 138 TVHFDRAFIGTG---ARPAEPPVP---GLAET--PYLTSTSALE-------LDHIPERLLVIGASVVALELAQAFARLGS 202 (468)
T ss_pred EEECCEEEEeCC---CCCCCCCCC---CCCCC--ceEcchhhhc-------hhcCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 799999999999 568888888 76653 2444433222 12347899999999999999999998765
Q ss_pred CCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccC
Q 009917 228 LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFG 307 (522)
Q Consensus 228 ~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (522)
+|+++.+.. ++|... ..+ ..
T Consensus 203 ---~Vtlv~~~~--~l~~~~-------~~~--------------------------------~~---------------- 222 (468)
T PRK14694 203 ---RVTVLARSR--VLSQED-------PAV--------------------------------GE---------------- 222 (468)
T ss_pred ---eEEEEECCC--CCCCCC-------HHH--------------------------------HH----------------
Confidence 499998742 344321 000 00
Q ss_pred CCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecC--cEEE-cCCCceecccEEEEecCCCCCcccccc
Q 009917 308 MVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GIVV-DGQTTPLKTDLVILATGFKGDVKLKNI 383 (522)
Q Consensus 308 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--gv~~-~dG~~~~~~D~VI~aTG~~~~~~l~~~ 383 (522)
.+.+.+++.+|+++.+. +.++..+ .+.+ .++.+ +++|.||+|+|.+|+..++..
T Consensus 223 ---------------------~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G~~pn~~~l~l 280 (468)
T PRK14694 223 ---------------------AIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGT-LRAEQLLVATGRTPNTENLNL 280 (468)
T ss_pred ---------------------HHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCE-EEeCEEEEccCCCCCcCCCCc
Confidence 01122334456666553 5555432 2222 23445 999999999999999765321
Q ss_pred cccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 384 FLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
.+.......+.+....+ +.++.||+|++|.+.. +...+.+..|++.++..+.|.
T Consensus 281 ------~~~g~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 281 ------ESIGVETERGAIRIDEH-LQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred ------hhcCcccCCCeEeeCCC-cccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 11011112222323222 4468999999997653 345677888999999998764
No 21
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.95 E-value=1.2e-26 Score=237.90 Aligned_cols=301 Identities=15% Similarity=0.166 Sum_probs=186.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHH
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (522)
|.+++|||||||+||+.+|+.|.+.+.+|+|||+++..- |. |..........+.+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~------~~----------------~~l~~~~~g~~~~~~~~ 65 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML------FT----------------PLLPQTTTGTLEFRSIC 65 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc------hh----------------hhHHHhcccCCChHHhH
Confidence 456899999999999999999987788999999876521 10 10000001111223444
Q ss_pred HHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEec--CC---CCceeEEEeCEEE
Q 009917 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED--AK---NHSTEVHQVDFVI 155 (522)
Q Consensus 81 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~---~g~~~~~~~d~lv 155 (522)
.-++..++.++. .....+|++|+..+ ..|++.. .. ++...++.||+||
T Consensus 66 ~~~~~~~~~~~~---~~i~~~V~~Id~~~------------------------~~v~~~~~~~~~~~~~~g~~i~yD~LV 118 (424)
T PTZ00318 66 EPVRPALAKLPN---RYLRAVVYDVDFEE------------------------KRVKCGVVSKSNNANVNTFSVPYDKLV 118 (424)
T ss_pred HHHHHHhccCCe---EEEEEEEEEEEcCC------------------------CEEEEecccccccccCCceEecCCEEE
Confidence 445555555554 23567999998764 2344411 10 0112579999999
Q ss_pred EeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCch--Hhh--------------hhccCCCEEEEEcCCCCHHHHH
Q 009917 156 LCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY--EAA--------------ANLVKGKRVTVVGLQKSALDIA 219 (522)
Q Consensus 156 vAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~--~~~--------------~~~~~gk~VvVIG~G~sg~dia 219 (522)
+|||+ .|..|.+| |.+.. .++...+.+... +.. ....+.++|+|||+|.+|+|+|
T Consensus 119 iAtGs---~~~~~~ip---G~~e~---~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A 189 (424)
T PTZ00318 119 VAHGA---RPNTFNIP---GVEER---AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFA 189 (424)
T ss_pred ECCCc---ccCCCCCC---CHHHc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHH
Confidence 99994 56777777 65431 111111111000 000 0012346999999999999999
Q ss_pred HHHhhhcC-----------CCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHH
Q 009917 220 MECTTANG-----------LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWA 288 (522)
Q Consensus 220 ~~l~~~~~-----------~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (522)
.+|+.... ...+|+++.+.+. ++|... ..
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~-ll~~~~-------~~-------------------------------- 229 (424)
T PTZ00318 190 AELADFFRDDVRNLNPELVEECKVTVLEAGSE-VLGSFD-------QA-------------------------------- 229 (424)
T ss_pred HHHHHHHHHHHHhhhhcccccCEEEEEcCCCc-ccccCC-------HH--------------------------------
Confidence 99986310 1246999998776 444321 00
Q ss_pred HHHHHHHHHhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecCcEEEcCCCceecccE
Q 009917 289 ISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDL 367 (522)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~gv~~~dG~~~~~~D~ 367 (522)
+++...+.+++.+|+++.+. |.++++++|+++||++ +++|.
T Consensus 230 -------------------------------------~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~-i~~d~ 271 (424)
T PTZ00318 230 -------------------------------------LRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEV-IPTGL 271 (424)
T ss_pred -------------------------------------HHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCE-EEccE
Confidence 00111233455678888665 8889888999999998 99999
Q ss_pred EEEecCCCCCcccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC------cchhhhHHHHHHHHHHHH
Q 009917 368 VILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES------ISNLYTSEMRCRWLAELL 441 (522)
Q Consensus 368 VI~aTG~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~------~~~~~~~e~qa~~ia~~l 441 (522)
||+|+|.+++. +.+.+. +. .++.+.+.....+..+++||+|++|.+.. +.....+..|++++|..|
T Consensus 272 vi~~~G~~~~~-~~~~~~---l~----~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni 343 (424)
T PTZ00318 272 VVWSTGVGPGP-LTKQLK---VD----KTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEF 343 (424)
T ss_pred EEEccCCCCcc-hhhhcC---Cc----ccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999999873 332221 10 12334555555555678999999996553 223456889999998877
Q ss_pred cCCC
Q 009917 442 DGAV 445 (522)
Q Consensus 442 ~g~~ 445 (522)
.+.+
T Consensus 344 ~~~l 347 (424)
T PTZ00318 344 NNEL 347 (424)
T ss_pred HHHh
Confidence 5443
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.94 E-value=1.7e-26 Score=239.99 Aligned_cols=305 Identities=18% Similarity=0.199 Sum_probs=184.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeecCCC-CCCCCCCCCCChh---
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSDYP-WPDSVTTDFPDHN--- 77 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 77 (522)
+||+||||||+|+++|..+++.|.+|+|||+.. +||+|.+ |+|...+......+++.... +........+...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 589999999999999999999999999999865 9999987 77776654433333322110 0000000011222
Q ss_pred ----HHHHHH-----HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeE
Q 009917 78 ----QVLDYI-----QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEV 148 (522)
Q Consensus 78 ----~~~~yl-----~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~ 148 (522)
++..++ ....+++++ .+..+ ++..++ ..+|++.++ ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~~~--------------------------~~~v~v~~g----~~~ 126 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGV--DYLRG-RARFKD--------------------------PKTVKVDLG----REV 126 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCc--EEEEE-EEEEcc--------------------------CCEEEEcCC----eEE
Confidence 232222 233444444 33332 222211 135666543 146
Q ss_pred EEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCC
Q 009917 149 HQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGL 228 (522)
Q Consensus 149 ~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~ 228 (522)
+.||+||+||| +.|..|++| |.+.+ .++++.+.... ...+++|+|||+|.+|+|+|..|+..+.+
T Consensus 127 ~~~~~lIiATG---s~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvIIGgG~~g~E~A~~l~~~g~~ 191 (463)
T TIGR02053 127 RGAKRFLIATG---ARPAIPPIP---GLKEA--GYLTSEEALAL-------DRIPESLAVIGGGAIGVELAQAFARLGSE 191 (463)
T ss_pred EEeCEEEEcCC---CCCCCCCCC---CcccC--ceECchhhhCc-------ccCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 89999999999 467888888 76654 24554443321 13468999999999999999999987654
Q ss_pred CCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCC
Q 009917 229 ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGM 308 (522)
Q Consensus 229 ~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (522)
||++.|.+. ++|... .- +...
T Consensus 192 ---Vtli~~~~~-~l~~~d-------~~--------------------------------~~~~---------------- 212 (463)
T TIGR02053 192 ---VTILQRSDR-LLPREE-------PE--------------------------------ISAA---------------- 212 (463)
T ss_pred ---EEEEEcCCc-CCCccC-------HH--------------------------------HHHH----------------
Confidence 999999876 445432 00 0000
Q ss_pred CCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecC--c--EEEc--CC-CceecccEEEEecCCCCCccc
Q 009917 309 VPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVD--GQ-TTPLKTDLVILATGFKGDVKL 380 (522)
Q Consensus 309 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--g--v~~~--dG-~~~~~~D~VI~aTG~~~~~~l 380 (522)
+.+.+++.+|+++.+. +.++..+ + +.+. ++ .+ +++|.||+|||++|+...
T Consensus 213 ---------------------l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~-i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 213 ---------------------VEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGE-VEADELLVATGRRPNTDG 270 (463)
T ss_pred ---------------------HHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceE-EEeCEEEEeECCCcCCCC
Confidence 1112333455666554 5555432 2 3333 23 35 999999999999998752
Q ss_pred ccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCCc-chhhhHHHHHHHHHHHHcCC
Q 009917 381 KNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-SNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~ 444 (522)
+. +....+ .-++.+.+.... .+.++.||+|++|.+... ...+.+..|++.+|..+.+.
T Consensus 271 l~-l~~~g~----~~~~~G~i~vd~-~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 271 LG-LEKAGV----KLDERGGILVDE-TLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CC-ccccCC----EECCCCcEeECC-CccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 11 000000 001223333333 345689999999976543 34578999999999998775
No 23
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.94 E-value=1e-25 Score=232.52 Aligned_cols=297 Identities=16% Similarity=0.178 Sum_probs=181.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC-ccccccc--cccceeecCCccceeecCCCCCCCCCCCCCChh
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD-IGGAWIK--TVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~-~Gg~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (522)
|+++||+||||||||+++|..|++.|.+|+|||+++. +||+|.. +.|...+...... . .+..
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~----~-----------~~~~ 65 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK----N-----------LSFE 65 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc----C-----------CCHH
Confidence 7779999999999999999999999999999999865 6998765 5554433222110 0 0112
Q ss_pred HHHHHHH-----------HHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCce
Q 009917 78 QVLDYIQ-----------SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (522)
Q Consensus 78 ~~~~yl~-----------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~ 146 (522)
++.++.. +...+.++ .+..+ ++..+ + ..+|.+..+ +..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~~~~~---~-----------------------~~~v~v~~~--~~~ 114 (438)
T PRK07251 66 QVMATKNTVTSRLRGKNYAMLAGSGV--DLYDA-EAHFV---S-----------------------NKVIEVQAG--DEK 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEc---c-----------------------CCEEEEeeC--CCc
Confidence 2222222 22223333 22222 12111 1 134555542 122
Q ss_pred eEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhc
Q 009917 147 EVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226 (522)
Q Consensus 147 ~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~ 226 (522)
.++.||+||+||| +.|+.|++| |.+.+.+ ++++.++... ...+|+|+|||+|.+|+|+|..+++.+
T Consensus 115 ~~~~~d~vViATG---s~~~~p~i~---G~~~~~~-v~~~~~~~~~-------~~~~~~vvIIGgG~~g~e~A~~l~~~g 180 (438)
T PRK07251 115 IELTAETIVINTG---AVSNVLPIP---GLADSKH-VYDSTGIQSL-------ETLPERLGIIGGGNIGLEFAGLYNKLG 180 (438)
T ss_pred EEEEcCEEEEeCC---CCCCCCCCC---CcCCCCc-EEchHHHhcc-------hhcCCeEEEECCCHHHHHHHHHHHHcC
Confidence 5799999999999 457888888 7654432 4555444332 235789999999999999999999876
Q ss_pred CCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhcccccc
Q 009917 227 GLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKF 306 (522)
Q Consensus 227 ~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (522)
. +|+++.|++. ++|... .. ....
T Consensus 181 ~---~Vtli~~~~~-~l~~~~-------~~--------------------------------~~~~-------------- 203 (438)
T PRK07251 181 S---KVTVLDAAST-ILPREE-------PS--------------------------------VAAL-------------- 203 (438)
T ss_pred C---eEEEEecCCc-cCCCCC-------HH--------------------------------HHHH--------------
Confidence 5 4999999876 444422 00 0000
Q ss_pred CCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecC--cE-EEcCCCceecccEEEEecCCCCCccccc
Q 009917 307 GMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--GI-VVDGQTTPLKTDLVILATGFKGDVKLKN 382 (522)
Q Consensus 307 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--gv-~~~dG~~~~~~D~VI~aTG~~~~~~l~~ 382 (522)
+.+.+++.+|+++.+. +.++..+ ++ +..+|++ +++|.||+|||++|+...+.
T Consensus 204 -----------------------~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~-i~~D~viva~G~~p~~~~l~ 259 (438)
T PRK07251 204 -----------------------AKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDET-YRFDALLYATGRKPNTEPLG 259 (438)
T ss_pred -----------------------HHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeE-EEcCEEEEeeCCCCCcccCC
Confidence 0112333345555553 5555432 33 3346677 99999999999999865432
Q ss_pred ccccccccccccCCCCCCcccceeecCCCCCceEEEcccCCc-chhhhHHHHHHHHHHHHcCC
Q 009917 383 IFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-SNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~ 444 (522)
.-. ..+. . ...+...... .+.++.||+|++|.+.+. ...+.+..|++.++..+.+.
T Consensus 260 l~~-~~~~---~-~~~g~i~vd~-~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 260 LEN-TDIE---L-TERGAIKVDD-YCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred chh-cCcE---E-CCCCcEEECC-CcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 100 0010 0 1222233333 345679999999976543 34567778888888887654
No 24
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-25 Score=215.46 Aligned_cols=267 Identities=21% Similarity=0.318 Sum_probs=187.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCc-eEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHH
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~-v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (522)
|..+||+||||||+||+||..+.+.+++ ++|+|+ ..+||.-.. . ...-.|+.+ +.-.++.++
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~-----~----~~venypg~-------~~~~~g~~L 63 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTK-----T----TDVENYPGF-------PGGILGPEL 63 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCcccc-----c----eeecCCCCC-------ccCCchHHH
Confidence 5678999999999999999999999998 666665 455643222 0 011112211 122256788
Q ss_pred HHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeec
Q 009917 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (522)
Q Consensus 80 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG 159 (522)
.+-+++.+..++. .+.. ..|.+++... +.+.|++.++ ++++++||+|||
T Consensus 64 ~~~~~~~a~~~~~--~~~~-~~v~~v~~~~----------------------~~F~v~t~~~------~~~ak~vIiAtG 112 (305)
T COG0492 64 MEQMKEQAEKFGV--EIVE-DEVEKVELEG----------------------GPFKVKTDKG------TYEAKAVIIATG 112 (305)
T ss_pred HHHHHHHHhhcCe--EEEE-EEEEEEeecC----------------------ceEEEEECCC------eEEEeEEEECcC
Confidence 8888889988887 4444 6777777653 1588888776 399999999999
Q ss_pred ccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 160 ~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
. .++.|.+| |.+.|.|+-+|.+..++ . .+++|+|+|||+|.||+|-|..|++.+.. ||+++|++
T Consensus 113 ~---~~~~~~~~---~e~e~~g~gv~yc~~cd------g-~~~~k~v~ViGgG~sAve~Al~L~~~a~~---Vtlv~r~~ 176 (305)
T COG0492 113 A---GARKLGVP---GEEEFEGKGVSYCATCD------G-FFKGKDVVVIGGGDSAVEEALYLSKIAKK---VTLVHRRD 176 (305)
T ss_pred C---cccCCCCC---cchhhcCCceEEeeecC------c-cccCCeEEEEcCCHHHHHHHHHHHHhcCe---EEEEecCc
Confidence 5 56777777 76689998888777776 3 58999999999999999999999998754 99999988
Q ss_pred ceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCccccccc
Q 009917 240 HWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELS 319 (522)
Q Consensus 240 ~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 319 (522)
.+ .+.. +
T Consensus 177 ~~-ra~~----------------------------------------~-------------------------------- 183 (305)
T COG0492 177 EF-RAEE----------------------------------------I-------------------------------- 183 (305)
T ss_pred cc-CcCH----------------------------------------H--------------------------------
Confidence 62 1110 0
Q ss_pred ccceeccCCccccccc-CCcEEEeecC-ceeEec---CcEEEcCC--C-ceecccEEEEecCCCCCcccccccccccccc
Q 009917 320 SCLTITVPEKFYDKVE-EGSIILKKSQ-DFSFCE---DGIVVDGQ--T-TPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (522)
Q Consensus 320 ~~~~~~~~~~~~~~l~-~g~v~v~~~~-i~~~~~---~gv~~~dG--~-~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~ 391 (522)
..+.++ ..+|.++.+. +.++.+ .+|++.+. + ..+.+|.|..+.|+.|+..+...+.
T Consensus 184 ----------~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~------ 247 (305)
T COG0492 184 ----------LVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLG------ 247 (305)
T ss_pred ----------HHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhcc------
Confidence 001111 2267777664 778776 46788763 2 2388999999999999976543221
Q ss_pred cccCCCCCCcccceeecCCCCCceEEEcccCC
Q 009917 392 YLAGSPTEKLPLYREIIHPQIPQLAIIGFSES 423 (522)
Q Consensus 392 ~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~ 423 (522)
.-++.+.+..-.. +.++.|++|++|.+..
T Consensus 248 --~~~~~g~I~v~~~-~~TsvpGifAaGDv~~ 276 (305)
T COG0492 248 --VLDENGYIVVDEE-METSVPGIFAAGDVAD 276 (305)
T ss_pred --ccCCCCcEEcCCC-cccCCCCEEEeEeecc
Confidence 1123333333333 7889999999996654
No 25
>PRK06370 mercuric reductase; Validated
Probab=99.94 E-value=6.5e-26 Score=235.54 Aligned_cols=305 Identities=15% Similarity=0.152 Sum_probs=184.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeec----CCCCCCCCCCCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFP 74 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 74 (522)
|.++||+||||||+|+++|..|++.|++|+|||+. .+||+|.+ |.|...+..++..+... .+.++.. .....
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~ 80 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVG-GPVSV 80 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccC-ccCcc
Confidence 45689999999999999999999999999999985 78999887 66654433222221100 1111100 00112
Q ss_pred ChhHHHHHHHHHH-----------Hhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCC
Q 009917 75 DHNQVLDYIQSYA-----------SHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (522)
Q Consensus 75 ~~~~~~~yl~~~~-----------~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (522)
...++.++.+..+ ++. ++ .+..++.+. .+ ..+|++. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~~----~~-----------------------~~~v~v~-~- 129 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHARF----ES-----------------------PNTVRVG-G- 129 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEEE----cc-----------------------CCEEEEC-c-
Confidence 3344444433333 222 44 444444321 11 1345552 2
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHH
Q 009917 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (522)
Q Consensus 143 ~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l 222 (522)
.++.||+||+||| +.|..|++| |.+.. .++++.+... ....+|+|+|||+|.+|+|+|..+
T Consensus 130 ----~~~~~d~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~~~-------~~~~~~~vvVIGgG~~g~E~A~~l 190 (463)
T PRK06370 130 ----ETLRAKRIFINTG---ARAAIPPIP---GLDEV--GYLTNETIFS-------LDELPEHLVIIGGGYIGLEFAQMF 190 (463)
T ss_pred ----EEEEeCEEEEcCC---CCCCCCCCC---CCCcC--ceEcchHhhC-------ccccCCEEEEECCCHHHHHHHHHH
Confidence 4689999999999 568888888 76542 2444443332 124579999999999999999999
Q ss_pred hhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhcc
Q 009917 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (522)
Q Consensus 223 ~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (522)
+..+. +|+++.|.+. ++|... .. +..
T Consensus 191 ~~~G~---~Vtli~~~~~-~l~~~~-------~~--------------------------------~~~----------- 216 (463)
T PRK06370 191 RRFGS---EVTVIERGPR-LLPRED-------ED--------------------------------VAA----------- 216 (463)
T ss_pred HHcCC---eEEEEEcCCC-CCcccC-------HH--------------------------------HHH-----------
Confidence 98765 4999999876 444321 00 000
Q ss_pred ccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecC--c--EEEc--CCCceecccEEEEecCCC
Q 009917 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVD--GQTTPLKTDLVILATGFK 375 (522)
Q Consensus 303 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--g--v~~~--dG~~~~~~D~VI~aTG~~ 375 (522)
.+.+.+++.+|+++.+. +.++.++ + +.+. ++...+++|.||+|||++
T Consensus 217 --------------------------~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 217 --------------------------AVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred --------------------------HHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 01122334456666554 5666532 2 3332 333239999999999999
Q ss_pred CCccccccccccccccc-ccCCCCCCcccceeecCCCCCceEEEcccCCc-chhhhHHHHHHHHHHHHcCC
Q 009917 376 GDVKLKNIFLSQTFQDY-LAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-SNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 376 ~~~~l~~~~~~~~l~~~-~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~ 444 (522)
|+...+. +.+. +.-++.+.+..... +.++.||+|++|.+... .....+..|++.++..+.+.
T Consensus 271 pn~~~l~------l~~~g~~~~~~G~i~vd~~-l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 271 PNTDDLG------LEAAGVETDARGYIKVDDQ-LRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred cCCCCcC------chhhCceECCCCcEeECcC-CcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 9875211 0100 00022233333333 45689999999976543 34567899999999998764
No 26
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.94 E-value=9.3e-26 Score=234.44 Aligned_cols=318 Identities=17% Similarity=0.204 Sum_probs=182.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceee-----cCCCCCCCCCCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF-----SDYPWPDSVTTDF 73 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 73 (522)
|.++||+|||||++|++||..|.+.|.+|+|||++ .+||+|.. +.|+..+......+.. ..+... ....
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~---~~~~ 77 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS---GEVT 77 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC---cCcc
Confidence 34589999999999999999999999999999985 78999987 6665443222211110 001010 0011
Q ss_pred CChhHHHHHHHHHHHhcCCccceEe-eeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeC
Q 009917 74 PDHNQVLDYIQSYASHFDLRKHIKF-NRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (522)
Q Consensus 74 ~~~~~~~~yl~~~~~~~~l~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d 152 (522)
.....+..+.+...++..-.-...+ ...|+.++... .|.+. .+|.+... +|+.+++.||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~-----------------~~~~~--~~v~v~~~-~g~~~~~~~d 137 (466)
T PRK07818 78 FDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYG-----------------TFTDA--NTLEVDLN-DGGTETVTFD 137 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-----------------EEcCC--CEEEEEec-CCCeeEEEcC
Confidence 1223333333333222100001111 11333333211 00001 23444322 1333579999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCce
Q 009917 153 FVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (522)
Q Consensus 153 ~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~V 232 (522)
+||+|||+ .|..| | |.+ +.+.++++.+... ....+++|+|||+|.+|+|+|..+++.+. +|
T Consensus 138 ~lViATGs---~p~~~--p---g~~-~~~~v~~~~~~~~-------~~~~~~~vvVIGgG~ig~E~A~~l~~~G~---~V 198 (466)
T PRK07818 138 NAIIATGS---STRLL--P---GTS-LSENVVTYEEQIL-------SRELPKSIVIAGAGAIGMEFAYVLKNYGV---DV 198 (466)
T ss_pred EEEEeCCC---CCCCC--C---CCC-CCCcEEchHHHhc-------cccCCCeEEEECCcHHHHHHHHHHHHcCC---eE
Confidence 99999995 45544 4 533 1233444332111 12357899999999999999999998765 49
Q ss_pred EEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCC
Q 009917 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (522)
Q Consensus 233 t~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 312 (522)
+++.+.+. ++|..+ .. ..
T Consensus 199 tlv~~~~~-~l~~~d-------~~--------------------------------~~---------------------- 216 (466)
T PRK07818 199 TIVEFLDR-ALPNED-------AE--------------------------------VS---------------------- 216 (466)
T ss_pred EEEecCCC-cCCccC-------HH--------------------------------HH----------------------
Confidence 99998876 555432 00 00
Q ss_pred cccccccccceeccCCcccccccCCcEEEeecC-ceeEecCc----EEEc--CCC-ceecccEEEEecCCCCCccccccc
Q 009917 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG----IVVD--GQT-TPLKTDLVILATGFKGDVKLKNIF 384 (522)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~g----v~~~--dG~-~~~~~D~VI~aTG~~~~~~l~~~~ 384 (522)
..+.+.+++.+|+++.+. +.++.+++ +++. +|+ ..+++|.||+|+|++|+..++...
T Consensus 217 ---------------~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~ 281 (466)
T PRK07818 217 ---------------KEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLE 281 (466)
T ss_pred ---------------HHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCch
Confidence 001122344456777664 66665432 3444 664 238999999999999997542110
Q ss_pred ccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 385 LSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 385 ~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
.. .+. . ...+.+..... +.++.||+|++|.+.. ....+.|..|++.+|..+.|.
T Consensus 282 ~~-g~~---~-~~~g~i~vd~~-~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 282 KT-GVA---L-TDRGAIAIDDY-MRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGA 336 (466)
T ss_pred hc-CcE---E-CCCCcEeeCCC-cccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 00 000 0 12222333333 4468999999996654 345678999999999999874
No 27
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.94 E-value=1.2e-25 Score=235.72 Aligned_cols=175 Identities=24% Similarity=0.340 Sum_probs=132.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.+||+||||||||++||..|++.|++|+||+. .+||++..... +..+.. ..+....++.++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~---------~~~~~~--------~~~~~~~~l~~~ 272 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG---------IENLIS--------VPYTTGSQLAAN 272 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC---------cccccc--------cCCCCHHHHHHH
Confidence 37999999999999999999999999999985 58888764100 001111 112355788899
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.++++++ .++++++|.+++... +.+.|++.++ ..+.||+||+|||.
T Consensus 273 l~~~l~~~gv--~i~~~~~V~~I~~~~----------------------~~~~v~~~~g-----~~i~~d~lIlAtGa-- 321 (515)
T TIGR03140 273 LEEHIKQYPI--DLMENQRAKKIETED----------------------GLIVVTLESG-----EVLKAKSVIVATGA-- 321 (515)
T ss_pred HHHHHHHhCC--eEEcCCEEEEEEecC----------------------CeEEEEECCC-----CEEEeCEEEECCCC--
Confidence 9999998988 888899999998753 3577877655 47999999999995
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.|+.|.+| |.+.+.+.-++.....+ .....+|+|+|||+|.+|+|+|..|+..+. +||++.+.+.
T Consensus 322 -~~~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~VvViGgG~~g~E~A~~L~~~g~---~Vtli~~~~~ 386 (515)
T TIGR03140 322 -RWRKLGVP---GEKEYIGKGVAYCPHCD------GPFFKGKDVAVIGGGNSGIEAAIDLAGIVR---HVTVLEFADE 386 (515)
T ss_pred -CcCCCCCC---CHHHcCCCeEEEeeccC------hhhcCCCEEEEECCcHHHHHHHHHHHhcCc---EEEEEEeCCc
Confidence 46777788 76556555555443332 123578999999999999999999988764 4999987664
No 28
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.94 E-value=1.3e-25 Score=232.98 Aligned_cols=308 Identities=18% Similarity=0.170 Sum_probs=181.1
Q ss_pred CC-CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCcccee----ecCCCCCCCCCCCC
Q 009917 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDF 73 (522)
Q Consensus 1 m~-~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 73 (522)
|+ ++||+|||||++|+++|..|++.|.+|+|+|+.+.+||+|.+ |+|+..+-..+..+. ...+-+.. ....
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~--~~~~ 78 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVF--GEPK 78 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCccc--CCCC
Confidence 44 689999999999999999999999999999998889999987 788765432222111 01111100 0111
Q ss_pred CChhHHHHHHHHHH-----------HhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCC
Q 009917 74 PDHNQVLDYIQSYA-----------SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (522)
Q Consensus 74 ~~~~~~~~yl~~~~-----------~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (522)
.....+.++.+... +..++ .+..+ ++..++. .+|.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~a~~~~~--------------------------~~v~v~~~- 128 (471)
T PRK06467 79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKV--TVVNG-LGKFTGG--------------------------NTLEVTGE- 128 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC--------------------------CEEEEecC-
Confidence 12344444443333 33344 33322 2222211 23444432
Q ss_pred CCceeEEEeCEEEEeecccCCCCC-CCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHH
Q 009917 143 NHSTEVHQVDFVILCVGRFSDVPN-IPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (522)
Q Consensus 143 ~g~~~~~~~d~lvvAtG~~s~~p~-~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~ 221 (522)
+|+..++.||+||+|||+ .|. .|.++ +... .++.+.+.... ...+++|+|||+|.+|+|+|..
T Consensus 129 ~g~~~~~~~d~lViATGs---~p~~~p~~~---~~~~---~v~~~~~~~~~-------~~~~~~vvIiGgG~iG~E~A~~ 192 (471)
T PRK06467 129 DGKTTVIEFDNAIIAAGS---RPIQLPFIP---HDDP---RIWDSTDALEL-------KEVPKRLLVMGGGIIGLEMGTV 192 (471)
T ss_pred CCceEEEEcCEEEEeCCC---CCCCCCCCC---CCCC---cEEChHHhhcc-------ccCCCeEEEECCCHHHHHHHHH
Confidence 133457999999999994 455 34444 3221 24444333321 1346899999999999999999
Q ss_pred HhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q 009917 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (522)
Q Consensus 222 l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (522)
++..+.+ ||++.+.+. ++|..+ .. +...+
T Consensus 193 l~~~G~~---Vtlv~~~~~-il~~~d-------~~--------------------------------~~~~~-------- 221 (471)
T PRK06467 193 YHRLGSE---VDVVEMFDQ-VIPAAD-------KD--------------------------------IVKVF-------- 221 (471)
T ss_pred HHHcCCC---EEEEecCCC-CCCcCC-------HH--------------------------------HHHHH--------
Confidence 9987754 999999886 555432 00 00000
Q ss_pred cccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEe--cCc--EEEcCC----CceecccEEEEec
Q 009917 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQ----TTPLKTDLVILAT 372 (522)
Q Consensus 302 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~g--v~~~dG----~~~~~~D~VI~aT 372 (522)
.+.+++. |+++.+. +.++. +++ +.++++ ++ +++|.||+|+
T Consensus 222 -----------------------------~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~-i~~D~vi~a~ 270 (471)
T PRK06467 222 -----------------------------TKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEP-QRYDAVLVAV 270 (471)
T ss_pred -----------------------------HHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceE-EEeCEEEEee
Confidence 1112222 4444443 44443 223 334432 24 8999999999
Q ss_pred CCCCCcccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 373 GFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 373 G~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
|++|+..++...... +.-++.+.+.... .+.++.||+|++|.+.. +...+.+..|++.++..+.|.
T Consensus 271 G~~pn~~~l~~~~~g-----l~~~~~G~I~Vd~-~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 271 GRVPNGKLLDAEKAG-----VEVDERGFIRVDK-QCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred cccccCCccChhhcC-----ceECCCCcEeeCC-CcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 999997643211000 0001222232322 34468999999996543 345678999999999999874
No 29
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.94 E-value=1.4e-25 Score=232.52 Aligned_cols=300 Identities=17% Similarity=0.167 Sum_probs=181.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcC--CceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g--~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (522)
++|+|||||++|+++|..|++.+ .+|+|||+++.++ |.. ...+......+....++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~ 60 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGA------------------CGLPYFVGGFFDDPNTMIA 60 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eec------------------CCCceEeccccCCHHHhhc
Confidence 37999999999999999999865 5899999987653 100 0000000111222334444
Q ss_pred HHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 82 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
+..+..+++++ ++.++++|++|+.+. ..|++.+..++....+.||+||+|||
T Consensus 61 ~~~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~~~~~~~~~~~~~yd~lviAtG-- 112 (444)
T PRK09564 61 RTPEEFIKSGI--DVKTEHEVVKVDAKN------------------------KTITVKNLKTGSIFNDTYDKLMIATG-- 112 (444)
T ss_pred CCHHHHHHCCC--eEEecCEEEEEECCC------------------------CEEEEEECCCCCEEEecCCEEEECCC--
Confidence 44555666787 788899999998764 34666542223333445999999999
Q ss_pred CCCCCCCCCCCCCCCCccCceEEeeccCCCCchH-hhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE-AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 162 s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~-~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+.|+.|.+| |.+. ..+++...+.+.... .......+++|+|||+|.+|+|+|..+...+. +|+++.+++.
T Consensus 113 -~~~~~~~i~---g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~---~Vtli~~~~~ 183 (444)
T PRK09564 113 -ARPIIPPIK---NINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGK---NVRIIQLEDR 183 (444)
T ss_pred -CCCCCCCCC---CcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCC---cEEEEeCCcc
Confidence 457778777 6542 124554443221100 00012467999999999999999999988764 4999998775
Q ss_pred eeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccc
Q 009917 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSS 320 (522)
Q Consensus 241 ~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 320 (522)
+++... +.- +...
T Consensus 184 -~l~~~~------~~~--------------------------------~~~~---------------------------- 196 (444)
T PRK09564 184 -ILPDSF------DKE--------------------------------ITDV---------------------------- 196 (444)
T ss_pred -cCchhc------CHH--------------------------------HHHH----------------------------
Confidence 333210 000 0000
Q ss_pred cceeccCCcccccccCCcEEEeecC-ceeEecCc---EEEcCCCceecccEEEEecCCCCCcccccccccccccccccCC
Q 009917 321 CLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG---IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGS 396 (522)
Q Consensus 321 ~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~g---v~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~~~ 396 (522)
+.+.+++.+|+++.+. +.++.+++ .+..++.+ +++|.||+|||++++.++++..... ..
T Consensus 197 ---------l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~-i~~d~vi~a~G~~p~~~~l~~~gl~-------~~ 259 (444)
T PRK09564 197 ---------MEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGE-YEADVVIVATGVKPNTEFLEDTGLK-------TL 259 (444)
T ss_pred ---------HHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCE-EEcCEEEECcCCCcCHHHHHhcCcc-------cc
Confidence 0112223345555443 55554332 22334556 9999999999999986654322110 01
Q ss_pred CCCCcccceeecCCCCCceEEEcccCC-----------cchhhhHHHHHHHHHHHHcCCC
Q 009917 397 PTEKLPLYREIIHPQIPQLAIIGFSES-----------ISNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 397 ~~~~~~ly~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~ia~~l~g~~ 445 (522)
..+.+..... +.++.||+|++|.+.. ....+.+..|++.+|..|.|..
T Consensus 260 ~~g~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 260 KNGAIIVDEY-GETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH 318 (444)
T ss_pred CCCCEEECCC-cccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence 2233333333 2357999999995543 1234678999999999988753
No 30
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.94 E-value=1.3e-25 Score=227.36 Aligned_cols=290 Identities=18% Similarity=0.216 Sum_probs=183.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhH
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (522)
|. ++|||||||+||+.+|..|++. +.+|+||++++..- |.... .+.. ........+
T Consensus 1 m~-~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~------y~~~~--------------l~~~-~~~~~~~~~ 58 (377)
T PRK04965 1 MS-NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE------YNKPD--------------LSHV-FSQGQRADD 58 (377)
T ss_pred CC-CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC------cCcCc--------------CcHH-HhCCCCHHH
Confidence 54 6899999999999999999985 46899999876421 10000 0000 001112234
Q ss_pred HHH-HHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEe
Q 009917 79 VLD-YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (522)
Q Consensus 79 ~~~-yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvA 157 (522)
+.. ....+++++++ .+.++++|++++... +.|++ ++ .++.||+||+|
T Consensus 59 ~~~~~~~~~~~~~gv--~~~~~~~V~~id~~~------------------------~~v~~-~~-----~~~~yd~LVlA 106 (377)
T PRK04965 59 LTRQSAGEFAEQFNL--RLFPHTWVTDIDAEA------------------------QVVKS-QG-----NQWQYDKLVLA 106 (377)
T ss_pred hhcCCHHHHHHhCCC--EEECCCEEEEEECCC------------------------CEEEE-CC-----eEEeCCEEEEC
Confidence 433 25567778888 788899999998754 45664 33 47899999999
Q ss_pred ecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEc
Q 009917 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (522)
Q Consensus 158 tG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r 237 (522)
|| +.|..|++| |.+. +++.....+.. ........+|+|+|||+|.+|+|+|..|+..+. +|+++.+
T Consensus 107 TG---~~~~~p~i~---G~~~----v~~~~~~~~~~-~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~ 172 (377)
T PRK04965 107 TG---ASAFVPPIP---GREL----MLTLNSQQEYR-AAETQLRDAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDN 172 (377)
T ss_pred CC---CCCCCCCCC---CCce----EEEECCHHHHH-HHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEec
Confidence 99 457788888 7543 33322222110 000122468999999999999999999998764 4999998
Q ss_pred ccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCccccc
Q 009917 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQE 317 (522)
Q Consensus 238 ~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 317 (522)
.+. +++... +- . ...
T Consensus 173 ~~~-~l~~~~----~~--~--------------------------------~~~-------------------------- 187 (377)
T PRK04965 173 AAS-LLASLM----PP--E--------------------------------VSS-------------------------- 187 (377)
T ss_pred CCc-ccchhC----CH--H--------------------------------HHH--------------------------
Confidence 876 333211 00 0 000
Q ss_pred ccccceeccCCcccccccCCcEEEeecC-ceeEecC----cEEEcCCCceecccEEEEecCCCCCccccccccccccccc
Q 009917 318 LSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (522)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----gv~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~ 392 (522)
.+.+.+++.+|++..+. +.++..+ .+.+.+|++ +++|.||+|+|++++..+.+....
T Consensus 188 -----------~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~-i~~D~vI~a~G~~p~~~l~~~~gl------ 249 (377)
T PRK04965 188 -----------RLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRS-IEVDAVIAAAGLRPNTALARRAGL------ 249 (377)
T ss_pred -----------HHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcE-EECCEEEECcCCCcchHHHHHCCC------
Confidence 01122333345555443 5666543 267788988 999999999999998765432211
Q ss_pred ccCCCCCCcccceeecCCCCCceEEEcccCCc-----chhhhHHHHHHHHHHHHcCCC
Q 009917 393 LAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-----SNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 393 ~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~ia~~l~g~~ 445 (522)
... +.+.... .+.++.||+|++|.+... ..+..+..|++++|+.+.|..
T Consensus 250 --~~~-~gi~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 250 --AVN-RGIVVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred --CcC-CCEEECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 011 1222222 344678999999965421 234457899999999998853
No 31
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.94 E-value=9.5e-26 Score=234.54 Aligned_cols=311 Identities=18% Similarity=0.201 Sum_probs=186.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCcccee----ecCCCCCCCCCCCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDFP 74 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 74 (522)
|..+||+|||||++|+++|..|.+.|.+|+|||+ +.+||+|.+ |+|...+..+...+. +..+.+.. .....
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~--~~~~~ 77 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHA--DGPKI 77 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCc--CCCcc
Confidence 7789999999999999999999999999999999 689999987 666654433222211 11222211 11345
Q ss_pred ChhHHHHHHHHHHHhcCCccce-E--ee-eeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEE
Q 009917 75 DHNQVLDYIQSYASHFDLRKHI-K--FN-RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (522)
Q Consensus 75 ~~~~~~~yl~~~~~~~~l~~~i-~--~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~ 150 (522)
+..++.++++...+++.. .+ . +. ..|.-+..... + .+.+.+.+ ++ +++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~g~~~-----------------~--~~~~~v~v-~~-----~~~~ 130 (460)
T PRK06292 78 DFKKVMARVRRERDRFVG--GVVEGLEKKPKIDKIKGTAR-----------------F--VDPNTVEV-NG-----ERIE 130 (460)
T ss_pred CHHHHHHHHHHHHHHHhc--chHHHHHhhCCCEEEEEEEE-----------------E--ccCCEEEE-Cc-----EEEE
Confidence 667888888877776532 11 0 00 11111111000 0 01134555 32 5799
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCccCc-eEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCC
Q 009917 151 VDFVILCVGRFSDVPNIPEFPPKKGPEAFHG-KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLE 229 (522)
Q Consensus 151 ~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g-~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~ 229 (522)
||+||+|||+ . .|.+| |.+.+.+ .++++.+... ....+|+|+|||+|.+|+|+|..|++.+.+
T Consensus 131 ~d~lIiATGs---~--~p~ip---g~~~~~~~~~~~~~~~~~-------~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~- 194 (460)
T PRK06292 131 AKNIVIATGS---R--VPPIP---GVWLILGDRLLTSDDAFE-------LDKLPKSLAVIGGGVIGLELGQALSRLGVK- 194 (460)
T ss_pred eCEEEEeCCC---C--CCCCC---CCcccCCCcEECchHHhC-------ccccCCeEEEECCCHHHHHHHHHHHHcCCc-
Confidence 9999999994 4 44455 5433222 2333333222 124679999999999999999999987654
Q ss_pred CceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCC
Q 009917 230 NPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMV 309 (522)
Q Consensus 230 ~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (522)
|+++.|.+. ++|..+ .- +...
T Consensus 195 --Vtli~~~~~-~l~~~d-------~~--------------------------------~~~~----------------- 215 (460)
T PRK06292 195 --VTVFERGDR-ILPLED-------PE--------------------------------VSKQ----------------- 215 (460)
T ss_pred --EEEEecCCC-cCcchh-------HH--------------------------------HHHH-----------------
Confidence 999999876 444321 00 0000
Q ss_pred CCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecC---cEEE--cCC--CceecccEEEEecCCCCCcccc
Q 009917 310 PKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED---GIVV--DGQ--TTPLKTDLVILATGFKGDVKLK 381 (522)
Q Consensus 310 p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~---gv~~--~dG--~~~~~~D~VI~aTG~~~~~~l~ 381 (522)
+.+.+++. |+++.+. +.+++.+ ++++ .+| ++ +++|.||+|+|++|+.+.+
T Consensus 216 --------------------~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~-i~~D~vi~a~G~~p~~~~l 273 (460)
T PRK06292 216 --------------------AQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTET-IEADYVLVATGRRPNTDGL 273 (460)
T ss_pred --------------------HHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEE-EEeCEEEEccCCccCCCCC
Confidence 11123333 4555443 5555432 2443 334 34 8999999999999997642
Q ss_pred cccccccccccccCCCCCCcccceeecCCCCCceEEEcccCCc-chhhhHHHHHHHHHHHHcCC
Q 009917 382 NIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-SNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~ 444 (522)
..-.. .+. . ++.+.+..... +.++.||+|++|.+... .....+..|++.+|..+.+.
T Consensus 274 ~l~~~-g~~---~-~~~g~i~vd~~-~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 274 GLENT-GIE---L-DERGRPVVDEH-TQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred CcHhh-CCE---e-cCCCcEeECCC-cccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 21000 000 0 12222323332 34589999999976543 34577999999999998873
No 32
>PRK14727 putative mercuric reductase; Provisional
Probab=99.94 E-value=1.2e-25 Score=234.00 Aligned_cols=313 Identities=17% Similarity=0.205 Sum_probs=182.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeec-CCCCCCCCCCCC--CChh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS-DYPWPDSVTTDF--PDHN 77 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~ 77 (522)
++||+|||||++|+++|..|.+.|.+|+|+|+.+.+||+|.+ |+|...+..++..+... ..++. ...... ....
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~-g~~~~~~~~~~~ 94 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFD-GVEAVAPSIDRG 94 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhcccc-CcccCCCccCHH
Confidence 479999999999999999999999999999998899999998 77776654443322111 11111 000001 1223
Q ss_pred HHHHHHHHHHHhcC---CccceEeeeeEEEE----EEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEE
Q 009917 78 QVLDYIQSYASHFD---LRKHIKFNRKVVGI----EFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (522)
Q Consensus 78 ~~~~yl~~~~~~~~---l~~~i~~~~~V~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~ 150 (522)
.+..+......+.. ....+..+..|.-+ ...+ .+.+.|...+ |+..++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~---------------------~~~v~v~~~~---g~~~~~~ 150 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD---------------------GNTLVVRLHD---GGERVLA 150 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec---------------------CCEEEEEeCC---CceEEEE
Confidence 33332222222110 00001111112111 1221 2346665544 3335799
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCC
Q 009917 151 VDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN 230 (522)
Q Consensus 151 ~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~ 230 (522)
||+||+||| +.|..|++| |.+.. ..+++.+... ....+|+|+|||+|.+|+|+|..++..+.
T Consensus 151 ~d~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~l~-------~~~~~k~vvVIGgG~iG~E~A~~l~~~G~--- 212 (479)
T PRK14727 151 ADRCLIATG---STPTIPPIP---GLMDT--PYWTSTEALF-------SDELPASLTVIGSSVVAAEIAQAYARLGS--- 212 (479)
T ss_pred eCEEEEecC---CCCCCCCCC---CcCcc--ceecchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHHcCC---
Confidence 999999999 568888888 75432 2233222111 12346999999999999999999998765
Q ss_pred ceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCC
Q 009917 231 PCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVP 310 (522)
Q Consensus 231 ~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 310 (522)
+||++.|. . +++..+ ... ...
T Consensus 213 ~Vtlv~~~-~-~l~~~d-------~~~--------------------------------~~~------------------ 233 (479)
T PRK14727 213 RVTILARS-T-LLFRED-------PLL--------------------------------GET------------------ 233 (479)
T ss_pred EEEEEEcC-C-CCCcch-------HHH--------------------------------HHH------------------
Confidence 49999874 3 344321 000 000
Q ss_pred CCcccccccccceeccCCcccccccCCcEEEeecC-ceeEe--cCcE--EEcCCCceecccEEEEecCCCCCcccccccc
Q 009917 311 KHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDGI--VVDGQTTPLKTDLVILATGFKGDVKLKNIFL 385 (522)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~gv--~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~ 385 (522)
+.+.+++.+|+++.+. +.++. ++++ .+.+| + +++|.||+|+|+.++..++..-.
T Consensus 234 -------------------l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~-i~aD~VlvA~G~~pn~~~l~l~~ 292 (479)
T PRK14727 234 -------------------LTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-E-LRAEKLLISTGRHANTHDLNLEA 292 (479)
T ss_pred -------------------HHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-e-EEeCEEEEccCCCCCccCCCchh
Confidence 1112333345555543 55553 2233 33343 5 89999999999999876422100
Q ss_pred cccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 386 SQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 386 ~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
.. +..+..+.+..... +.++.||+|++|.+.. +...+.+..|++.++..+.|.
T Consensus 293 ~g-----~~~~~~G~i~Vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 293 VG-----VTTDTSGAIVVNPA-METSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred hC-----ceecCCCCEEECCC-eecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 00 00012232333333 3468999999997654 345677888999999999875
No 33
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.94 E-value=7.4e-26 Score=235.84 Aligned_cols=313 Identities=18% Similarity=0.239 Sum_probs=189.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC--------Cccccccc--cccceeecCCccceee-----cCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--------DIGGAWIK--TVETTMLQTPKQLYQF-----SDYPWPD 67 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~--------~~Gg~w~~--~~~~~~~~~~~~~~~~-----~~~~~~~ 67 (522)
.+||+||||||+|++||..+.+.|.+|+|+|+.. .+||+|.+ |+|...+..++..+.. ..+.+..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 3799999999999999999999999999999632 48999877 8887554333222111 0111110
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCcee
Q 009917 68 SVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (522)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~ 147 (522)
..-....++.++++..++.++. .+....++..|+... ++ + .| .+.++|++.+. +...
T Consensus 85 ---~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~v~~i~--g~-----------a-~~--~~~~~v~v~~~--~~~~ 141 (499)
T PTZ00052 85 ---SSSFNWGKLVTTVQNHIRSLNF--SYRTGLRSSKVEYIN--GL-----------A-KL--KDEHTVSYGDN--SQEE 141 (499)
T ss_pred ---CCCcCHHHHHHHHHHHHHHhhH--HHHHHhhhcCcEEEE--EE-----------E-EE--ccCCEEEEeeC--CCce
Confidence 1123557788888888777643 232222222222211 00 0 00 12245666542 2235
Q ss_pred EEEeCEEEEeecccCCCCCCCC-CCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhc
Q 009917 148 VHQVDFVILCVGRFSDVPNIPE-FPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTAN 226 (522)
Q Consensus 148 ~~~~d~lvvAtG~~s~~p~~P~-~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~ 226 (522)
.++||+||+||| +.|..|. +| |.+.+ .+.+.+... ....+++|+|||+|.+|+|+|..|+..+
T Consensus 142 ~i~~d~lIIATG---s~p~~p~~i~---G~~~~---~~~~~~~~~-------~~~~~~~vvIIGgG~iG~E~A~~l~~~G 205 (499)
T PTZ00052 142 TITAKYILIATG---GRPSIPEDVP---GAKEY---SITSDDIFS-------LSKDPGKTLIVGASYIGLETAGFLNELG 205 (499)
T ss_pred EEECCEEEEecC---CCCCCCCCCC---Cccce---eecHHHHhh-------hhcCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 799999999999 4677774 77 65432 233332222 1134689999999999999999999887
Q ss_pred CCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhcccccc
Q 009917 227 GLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKF 306 (522)
Q Consensus 227 ~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (522)
.+ ||++.|+ . +++..+ ... ...
T Consensus 206 ~~---Vtli~~~-~-~l~~~d-------~~~--------------------------------~~~-------------- 227 (499)
T PTZ00052 206 FD---VTVAVRS-I-PLRGFD-------RQC--------------------------------SEK-------------- 227 (499)
T ss_pred Cc---EEEEEcC-c-ccccCC-------HHH--------------------------------HHH--------------
Confidence 54 9999874 3 334322 000 000
Q ss_pred CCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--C--cEEEcCCCceecccEEEEecCCCCCcccc
Q 009917 307 GMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D--GIVVDGQTTPLKTDLVILATGFKGDVKLK 381 (522)
Q Consensus 307 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~--gv~~~dG~~~~~~D~VI~aTG~~~~~~l~ 381 (522)
+.+.+++.+|+++.+. +.++.. + .+.+++|++ +++|.||+|+|++|+..++
T Consensus 228 -----------------------l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~-i~~D~vl~a~G~~pn~~~l 283 (499)
T PTZ00052 228 -----------------------VVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTT-ELFDTVLYATGRKPDIKGL 283 (499)
T ss_pred -----------------------HHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCE-EEcCEEEEeeCCCCCcccc
Confidence 1122333345555543 344432 1 256778887 9999999999999997654
Q ss_pred ccccccccccccc-CCCCCCcccceeecCCCCCceEEEcccCC--cchhhhHHHHHHHHHHHHcCC
Q 009917 382 NIFLSQTFQDYLA-GSPTEKLPLYREIIHPQIPQLAIIGFSES--ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 382 ~~~~~~~l~~~~~-~~~~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~ia~~l~g~ 444 (522)
.. ++... -++.+....... .++.||+|++|.+.. +...+.+..|++.++..|.|.
T Consensus 284 ~l------~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 284 NL------NAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred Cc------hhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 21 11000 012222222222 578899999997542 345678999999999988764
No 34
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.94 E-value=2.9e-25 Score=230.24 Aligned_cols=308 Identities=18% Similarity=0.203 Sum_probs=181.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceee------cCCCCCCCCCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF------SDYPWPDSVTTD 72 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 72 (522)
|.++||+||||||+|++||..+.+.|.+|+|+|+++.+||+|.+ |.|+..+......+.. ..+-... ..
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~--~~- 77 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV--KP- 77 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc--cC-
Confidence 77789999999999999999999999999999987889999877 7787765444433311 1110000 00
Q ss_pred CCChhHHHHHHHHHH-----------HhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecC
Q 009917 73 FPDHNQVLDYIQSYA-----------SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (522)
Q Consensus 73 ~~~~~~~~~yl~~~~-----------~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (522)
-....++.++..... ++.++ .+..+ +. +... ..+..|...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~a---~~~~---------------------~~~v~v~~~~- 129 (466)
T PRK06115 78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKV--DWIKG-WG---RLDG---------------------VGKVVVKAED- 129 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EE---EEcc---------------------CCEEEEEcCC-
Confidence 011222222222221 12222 11111 11 1111 1223343333
Q ss_pred CCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCc-eEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHH
Q 009917 142 KNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHG-KVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAM 220 (522)
Q Consensus 142 ~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g-~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~ 220 (522)
|+..++.||+||+|||+. |. .+| |.+ +.+ .++++.+.... ...+|+|+|||+|.+|+|+|.
T Consensus 130 --g~~~~~~~d~lVIATGs~---p~--~ip---g~~-~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~ig~E~A~ 191 (466)
T PRK06115 130 --GSETQLEAKDIVIATGSE---PT--PLP---GVT-IDNQRIIDSTGALSL-------PEVPKHLVVIGAGVIGLELGS 191 (466)
T ss_pred --CceEEEEeCEEEEeCCCC---CC--CCC---CCC-CCCCeEECHHHHhCC-------ccCCCeEEEECCCHHHHHHHH
Confidence 333579999999999954 43 244 543 222 24444333221 235799999999999999999
Q ss_pred HHhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 009917 221 ECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKK 300 (522)
Q Consensus 221 ~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (522)
.++..+. +||++.|.+. ++|... .. ...
T Consensus 192 ~l~~~G~---~Vtlie~~~~-il~~~d-------~~--------------------------------~~~--------- 219 (466)
T PRK06115 192 VWRRLGA---QVTVVEYLDR-ICPGTD-------TE--------------------------------TAK--------- 219 (466)
T ss_pred HHHHcCC---eEEEEeCCCC-CCCCCC-------HH--------------------------------HHH---------
Confidence 9998765 4999998876 555422 00 000
Q ss_pred ccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--CcE--EEc---CC--CceecccEEEE
Q 009917 301 HRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DGI--VVD---GQ--TTPLKTDLVIL 370 (522)
Q Consensus 301 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~gv--~~~---dG--~~~~~~D~VI~ 370 (522)
.+.+.+++.+|+++.+. +.++.+ +++ .+. +| ++ +++|.||+
T Consensus 220 ----------------------------~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~-i~~D~vi~ 270 (466)
T PRK06115 220 ----------------------------TLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAET-LQADYVLV 270 (466)
T ss_pred ----------------------------HHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeE-EEeCEEEE
Confidence 01122334456666654 666653 233 232 23 35 89999999
Q ss_pred ecCCCCCcccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCCC
Q 009917 371 ATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 371 aTG~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~~ 445 (522)
|+|++|+...+.. +........+..... ..+.++.||+|++|.+.. +...+.+..||+.++..+.|..
T Consensus 271 a~G~~pn~~~l~~------~~~g~~~~~~G~~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~ 339 (466)
T PRK06115 271 AIGRRPYTQGLGL------ETVGLETDKRGMLAN-DHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA 339 (466)
T ss_pred ccCCccccccCCc------ccccceeCCCCEEEC-CCeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 9999998753221 110000111112222 234578999999997654 3456789999999999988753
No 35
>PRK13748 putative mercuric reductase; Provisional
Probab=99.94 E-value=3e-25 Score=236.45 Aligned_cols=310 Identities=16% Similarity=0.216 Sum_probs=183.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceee-cCCCCCCCC--CCCCCChh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF-SDYPWPDSV--TTDFPDHN 77 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~ 77 (522)
++||+|||||++|+++|..|.+.|.+|+|||++ .+||+|.+ |+|...+..+...... ...++...+ ...-....
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 479999999999999999999999999999997 89999988 7777655333322111 111110000 01112334
Q ss_pred HHHHHHHHHHHhcC-------Ccc--ceEe-eeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCcee
Q 009917 78 QVLDYIQSYASHFD-------LRK--HIKF-NRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (522)
Q Consensus 78 ~~~~yl~~~~~~~~-------l~~--~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~ 147 (522)
.+.++.+...+++. +.+ .+.+ ..++..++ .+.+.|+..+ |+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~------------------------~~~~~v~~~~---g~~~ 229 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKD------------------------DQTLIVRLND---GGER 229 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEec------------------------CCEEEEEeCC---CceE
Confidence 45554443333221 000 1222 22333222 1335555433 3335
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcC
Q 009917 148 VHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227 (522)
Q Consensus 148 ~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~ 227 (522)
++.||+||+||| +.|.+|++| |.+.. ..+++.+.. .....+|+|+|||+|.+|+|+|..|+..+.
T Consensus 230 ~~~~d~lviAtG---s~p~~p~i~---g~~~~--~~~~~~~~~-------~~~~~~~~vvViGgG~ig~E~A~~l~~~g~ 294 (561)
T PRK13748 230 VVAFDRCLIATG---ASPAVPPIP---GLKET--PYWTSTEAL-------VSDTIPERLAVIGSSVVALELAQAFARLGS 294 (561)
T ss_pred EEEcCEEEEcCC---CCCCCCCCC---CCCcc--ceEccHHHh-------hcccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 799999999999 568888888 76542 122222111 122457999999999999999999998765
Q ss_pred CCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccC
Q 009917 228 LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFG 307 (522)
Q Consensus 228 ~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (522)
+|+++.|.+ +++..+ .-+ .+.
T Consensus 295 ---~Vtli~~~~--~l~~~d-------~~~--------------------------------~~~--------------- 315 (561)
T PRK13748 295 ---KVTILARST--LFFRED-------PAI--------------------------------GEA--------------- 315 (561)
T ss_pred ---EEEEEecCc--cccccC-------HHH--------------------------------HHH---------------
Confidence 499999853 334321 000 000
Q ss_pred CCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--CcEEEc-CCCceecccEEEEecCCCCCcccccc
Q 009917 308 MVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DGIVVD-GQTTPLKTDLVILATGFKGDVKLKNI 383 (522)
Q Consensus 308 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~gv~~~-dG~~~~~~D~VI~aTG~~~~~~l~~~ 383 (522)
+.+.+++.+|+++.+. +.++.. +.+.+. ++.+ +++|.||+|+|++|+..++..
T Consensus 316 ----------------------l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~-i~~D~vi~a~G~~pn~~~l~l 372 (561)
T PRK13748 316 ----------------------VTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGE-LRADKLLVATGRAPNTRSLAL 372 (561)
T ss_pred ----------------------HHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCe-EEeCEEEEccCCCcCCCCcCc
Confidence 1122333445555543 555532 223222 2335 899999999999999764321
Q ss_pred ccccccccccc-CCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 384 FLSQTFQDYLA-GSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 384 ~~~~~l~~~~~-~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
++... -++.+.+.... .+.++.||+|++|.+.. +...+.+..|++.++..+.|.
T Consensus 373 ------~~~g~~~~~~g~i~vd~-~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 373 ------DAAGVTVNAQGAIVIDQ-GMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred ------hhcCceECCCCCEeECC-CcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 11000 01222233322 24468999999997654 345677888999999998764
No 36
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.94 E-value=7.6e-25 Score=231.19 Aligned_cols=176 Identities=24% Similarity=0.374 Sum_probs=131.9
Q ss_pred CCC-CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHH
Q 009917 1 MEK-KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (522)
Q Consensus 1 m~~-~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (522)
|.+ +||+|||||||||+||..|++.|++|+|||++ .+||.+..... ...+| .....++.++
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~------------i~~~p-----g~~~~~~~~l 62 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSE------------VVNYP-----GILNTTGPEL 62 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccc------------cccCC-----CCcCCCHHHH
Confidence 544 79999999999999999999999999999995 68887653110 00111 1112355788
Q ss_pred HHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeec
Q 009917 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (522)
Q Consensus 80 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG 159 (522)
.+++++.++++++ .+ ++++|+.++..+ ..+.|.+.++ .+.+|+||+|||
T Consensus 63 ~~~l~~~~~~~gv--~~-~~~~V~~i~~~~----------------------~~~~V~~~~g------~~~a~~lVlATG 111 (555)
T TIGR03143 63 MQEMRQQAQDFGV--KF-LQAEVLDVDFDG----------------------DIKTIKTARG------DYKTLAVLIATG 111 (555)
T ss_pred HHHHHHHHHHcCC--EE-eccEEEEEEecC----------------------CEEEEEecCC------EEEEeEEEECCC
Confidence 8999999999987 44 477888888643 3366666443 478999999999
Q ss_pred ccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 160 RFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 160 ~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
+ .|+.|++| |.+.+.+..+|.....+ ...+.+++|+|||+|.+|+|+|..|+..+. +|+++.|.+
T Consensus 112 a---~p~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~---~Vtli~~~~ 176 (555)
T TIGR03143 112 A---SPRKLGFP---GEEEFTGRGVAYCATCD------GEFFTGMDVFVIGGGFAAAEEAVFLTRYAS---KVTVIVREP 176 (555)
T ss_pred C---ccCCCCCC---CHHHhCCceEEEEeecC------hhhcCCCEEEEECCCHHHHHHHHHHHccCC---EEEEEEeCC
Confidence 4 57888888 87667666666554433 234689999999999999999999987764 599999987
Q ss_pred c
Q 009917 240 H 240 (522)
Q Consensus 240 ~ 240 (522)
.
T Consensus 177 ~ 177 (555)
T TIGR03143 177 D 177 (555)
T ss_pred c
Confidence 5
No 37
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.93 E-value=5e-25 Score=229.35 Aligned_cols=315 Identities=15% Similarity=0.163 Sum_probs=186.4
Q ss_pred CC-CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeec----CCCCCCCCCCCC
Q 009917 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDF 73 (522)
Q Consensus 1 m~-~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 73 (522)
|+ .+||+||||||+|+++|..|++.|.+|+|+|+. .+||+|.. |.|...+...+..+... .+.+.. ....
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~--~~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISV--SGPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccC--CCCc
Confidence 55 589999999999999999999999999999995 79999988 77776654433332211 010100 0001
Q ss_pred CChhHHHH-------HHH----HHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCC
Q 009917 74 PDHNQVLD-------YIQ----SYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK 142 (522)
Q Consensus 74 ~~~~~~~~-------yl~----~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (522)
.....+.+ ++. ...++.++ .+..+ ++..++...-++ +++.+.|.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g-~a~~i~~~~~~~-----------------~~~~~~v~~~~-- 135 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKI--DVFHG-IGRILGPSIFSP-----------------MPGTVSVETET-- 135 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEeCCCCCcC-----------------CceEEEEEeCC--
Confidence 11122222 222 23333444 34333 555555431000 12345565544
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCce-EEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHH
Q 009917 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGK-VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (522)
Q Consensus 143 ~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~-~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~ 221 (522)
|+.+++.||+||+|||+ .|+.| | +.+ +.+. ++++.+.... ...+++|+|||+|.+|+|+|..
T Consensus 136 -g~~~~~~~d~lViATGs---~p~~~--p---~~~-~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~~G~E~A~~ 198 (472)
T PRK05976 136 -GENEMIIPENLLIATGS---RPVEL--P---GLP-FDGEYVISSDEALSL-------ETLPKSLVIVGGGVIGLEWASM 198 (472)
T ss_pred -CceEEEEcCEEEEeCCC---CCCCC--C---CCC-CCCceEEcchHhhCc-------cccCCEEEEECCCHHHHHHHHH
Confidence 33357999999999995 45443 2 222 1222 4444433221 1347899999999999999999
Q ss_pred HhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q 009917 222 CTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (522)
Q Consensus 222 l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (522)
|++.+. +||++.|.+. ++|... ..+ ..
T Consensus 199 l~~~g~---~Vtli~~~~~-il~~~~-------~~~--------------------------------~~---------- 225 (472)
T PRK05976 199 LADFGV---EVTVVEAADR-ILPTED-------AEL--------------------------------SK---------- 225 (472)
T ss_pred HHHcCC---eEEEEEecCc-cCCcCC-------HHH--------------------------------HH----------
Confidence 998765 4999999876 555432 000 00
Q ss_pred cccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEe---cCcE---EEcCCC-ceecccEEEEecC
Q 009917 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC---EDGI---VVDGQT-TPLKTDLVILATG 373 (522)
Q Consensus 302 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~---~~gv---~~~dG~-~~~~~D~VI~aTG 373 (522)
.+.+.+++.+|+++.+. +.++. ++++ .+.+|+ ..+++|.||+|||
T Consensus 226 ---------------------------~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G 278 (472)
T PRK05976 226 ---------------------------EVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVG 278 (472)
T ss_pred ---------------------------HHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeC
Confidence 01122334456666654 55664 3333 334664 2389999999999
Q ss_pred CCCCcccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 374 FKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 374 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
.+|+...+. ++........+.+.... .+.++.||+|++|.... +.....+..|++.++..+.|.
T Consensus 279 ~~p~~~~l~------l~~~~~~~~~g~i~Vd~-~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 279 RRPNTEGIG------LENTDIDVEGGFIQIDD-FCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGK 343 (472)
T ss_pred CccCCCCCC------chhcCceecCCEEEECC-CcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999865321 11100101122222222 23456899999997643 334678899999999988775
No 38
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.93 E-value=1.4e-25 Score=231.93 Aligned_cols=321 Identities=15% Similarity=0.151 Sum_probs=188.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhc-CCceEEEecC--------CCccccccc--cccceeecCCccceeec----CCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEAR--------SDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPD 67 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~-g~~v~i~e~~--------~~~Gg~w~~--~~~~~~~~~~~~~~~~~----~~~~~~ 67 (522)
++||+|||+|++|..+|..+++. |.+|+|+|+. ..+||+|.+ |.|...+..++..+... .+-+..
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~ 82 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF 82 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence 48999999999999999999996 8999999984 579999998 88887765544332211 111100
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcC--CccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCC---
Q 009917 68 SVTTDFPDHNQVLDYIQSYASHFD--LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK--- 142 (522)
Q Consensus 68 ~~~~~~~~~~~~~~yl~~~~~~~~--l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 142 (522)
.....-.....+.++.+.+.++.. ....+.-...|.-+.-.. .| .+..+|.+....
T Consensus 83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a-----------------~f--~~~~~v~V~~~~~~~ 143 (486)
T TIGR01423 83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWG-----------------AL--EDKNVVLVRESADPK 143 (486)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE-----------------EE--ccCCEEEEeeccCCC
Confidence 000001123344444444333310 000000001122221111 00 012356665321
Q ss_pred CCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHH
Q 009917 143 NHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (522)
Q Consensus 143 ~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l 222 (522)
++..+++.||+||+||| +.|..|++| |.+. ++.+.+... ....+++|+|||+|.+|+|+|..+
T Consensus 144 ~~~~~~~~~d~lIIATG---s~p~~p~i~---G~~~----~~~~~~~~~-------~~~~~~~vvIIGgG~iG~E~A~~~ 206 (486)
T TIGR01423 144 SAVKERLQAEHILLATG---SWPQMLGIP---GIEH----CISSNEAFY-------LDEPPRRVLTVGGGFISVEFAGIF 206 (486)
T ss_pred CCcceEEECCEEEEecC---CCCCCCCCC---Chhh----eechhhhhc-------cccCCCeEEEECCCHHHHHHHHHH
Confidence 11235799999999999 467888888 7543 222222211 113579999999999999999877
Q ss_pred hhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhcc
Q 009917 223 TTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHR 302 (522)
Q Consensus 223 ~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (522)
+.....+.+||++.|.+. ++|..+ ..+ .+
T Consensus 207 ~~l~~~G~~Vtli~~~~~-il~~~d-------~~~--------------------------------~~----------- 235 (486)
T TIGR01423 207 NAYKPRGGKVTLCYRNNM-ILRGFD-------STL--------------------------------RK----------- 235 (486)
T ss_pred HHhccCCCeEEEEecCCc-cccccC-------HHH--------------------------------HH-----------
Confidence 654221245999999887 445432 000 00
Q ss_pred ccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--C---cEEEcCCCceecccEEEEecCCCC
Q 009917 303 LAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D---GIVVDGQTTPLKTDLVILATGFKG 376 (522)
Q Consensus 303 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~---gv~~~dG~~~~~~D~VI~aTG~~~ 376 (522)
.+.+.+++.+|+++.+. +.++.. + .|.+++|++ +++|.||+|||++|
T Consensus 236 --------------------------~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~-i~~D~vl~a~G~~P 288 (486)
T TIGR01423 236 --------------------------ELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKT-LDVDVVMMAIGRVP 288 (486)
T ss_pred --------------------------HHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCE-EEcCEEEEeeCCCc
Confidence 01122334456666554 556642 2 266678887 99999999999999
Q ss_pred Cccccccccccccccccc-CCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 377 DVKLKNIFLSQTFQDYLA-GSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 377 ~~~l~~~~~~~~l~~~~~-~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
+..++.. +.... -++.+.+..... +.++.||+|++|.+.. +...+.+..|++.++..+.|.
T Consensus 289 n~~~l~l------~~~gl~~~~~G~I~Vd~~-l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 289 RTQTLQL------DKVGVELTKKGAIQVDEF-SRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred CcccCCc------hhhCceECCCCCEecCCC-CcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 9764321 10000 012233333333 3468999999997654 345678999999999988764
No 39
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=228.03 Aligned_cols=294 Identities=14% Similarity=0.149 Sum_probs=178.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCC--ceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhH
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQ 78 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~--~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (522)
|.+++|+|||||+||+++|..|++.|. +|+++++.+... |. +...++. +...+.. ...+..
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~------y~--r~~l~~~---~~~~~~~---~~~~~~--- 63 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP------YE--RPPLSKS---MLLEDSP---QLQQVL--- 63 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC------CC--CCCCCHH---HHCCCCc---cccccC---
Confidence 777899999999999999999999876 799999876532 10 0000000 0000000 000000
Q ss_pred HHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEee
Q 009917 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (522)
Q Consensus 79 ~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAt 158 (522)
-.++..+.++ .++.++.|..++... ..|++.++ .++.||+||+||
T Consensus 64 ----~~~~~~~~~i--~~~~g~~V~~id~~~------------------------~~v~~~~g-----~~~~yd~LViAT 108 (396)
T PRK09754 64 ----PANWWQENNV--HLHSGVTIKTLGRDT------------------------RELVLTNG-----ESWHWDQLFIAT 108 (396)
T ss_pred ----CHHHHHHCCC--EEEcCCEEEEEECCC------------------------CEEEECCC-----CEEEcCEEEEcc
Confidence 0122334566 777888899998754 45776665 479999999999
Q ss_pred cccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcc
Q 009917 159 GRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (522)
Q Consensus 159 G~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~ 238 (522)
|+ .|+.|+++ +.. ...++......+... .......+|+|+|||+|.+|+|+|..|++.+. +||++.+.
T Consensus 109 Gs---~~~~~p~~---~~~--~~~v~~~~~~~da~~-l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~ 176 (396)
T PRK09754 109 GA---AARPLPLL---DAL--GERCFTLRHAGDAAR-LREVLQPERSVVIVGAGTIGLELAASATQRRC---KVTVIELA 176 (396)
T ss_pred CC---CCCCCCCC---CcC--CCCEEecCCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecC
Confidence 95 45655544 321 112333222211100 00122468999999999999999999998764 49999987
Q ss_pred cceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccc
Q 009917 239 EHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQEL 318 (522)
Q Consensus 239 ~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 318 (522)
+. ++++.. .+ ....
T Consensus 177 ~~-~l~~~~---~~-----------------------------------~~~~--------------------------- 190 (396)
T PRK09754 177 AT-VMGRNA---PP-----------------------------------PVQR--------------------------- 190 (396)
T ss_pred Cc-chhhhc---CH-----------------------------------HHHH---------------------------
Confidence 76 333211 00 0000
Q ss_pred cccceeccCCcccccccCCcEEEeecC-ceeEecCc---EEEcCCCceecccEEEEecCCCCCccccccccccccccccc
Q 009917 319 SSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG---IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLA 394 (522)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~g---v~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~ 394 (522)
.+.+.+++.+|+++.+. +.++..++ +.+.+|++ +++|.||+|+|.+++..+..... +
T Consensus 191 ----------~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~-i~aD~Vv~a~G~~pn~~l~~~~g---l----- 251 (396)
T PRK09754 191 ----------YLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGET-LQADVVIYGIGISANDQLAREAN---L----- 251 (396)
T ss_pred ----------HHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCE-EECCEEEECCCCChhhHHHHhcC---C-----
Confidence 01112233456666554 66665432 56788988 99999999999999876533211 1
Q ss_pred CCCCCCcccceeecCCCCCceEEEcccCCc----------chhhhHHHHHHHHHHHHcCCC
Q 009917 395 GSPTEKLPLYREIIHPQIPQLAIIGFSESI----------SNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 395 ~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~----------~~~~~~e~qa~~ia~~l~g~~ 445 (522)
.. ++.+.... .+.++.||+|++|.+... ..+..+..|++.+|..+.|..
T Consensus 252 ~~-~~gi~vd~-~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 252 DT-ANGIVIDE-ACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred Cc-CCCEEECC-CCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 01 12232222 344678999999954321 124679999999999998753
No 40
>PLN02546 glutathione reductase
Probab=99.93 E-value=7.9e-26 Score=236.31 Aligned_cols=301 Identities=19% Similarity=0.236 Sum_probs=181.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEec---------CCCccccccc--cccceeecCCccceee----cCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA---------RSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPD 67 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~---------~~~~Gg~w~~--~~~~~~~~~~~~~~~~----~~~~~~~ 67 (522)
.+||+|||||++|+.+|..+++.|.+|+|+|+ ...+||+|.+ |.|...+...+..... ..+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 37999999999999999999999999999996 2468999998 8888776544333221 1111110
Q ss_pred CCCCCCCChhHHH-----------HHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEE
Q 009917 68 SVTTDFPDHNQVL-----------DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (522)
Q Consensus 68 ~~~~~~~~~~~~~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (522)
. ...-.....+. +++....++.++ .+.. .++..++. .+|
T Consensus 159 ~-~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~-G~a~~vd~--------------------------~~V 208 (558)
T PLN02546 159 E-TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIE-GRGKIVDP--------------------------HTV 208 (558)
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-eEEEEccC--------------------------CEE
Confidence 0 00001122222 233333333333 2222 13333322 135
Q ss_pred EEecCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHH
Q 009917 137 AVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSAL 216 (522)
Q Consensus 137 ~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~ 216 (522)
.+ ++ +++.||+||+||| +.|..|++| |.+. ++++.+... ....+++|+|||+|.+|+
T Consensus 209 ~v-~G-----~~~~~D~LVIATG---s~p~~P~Ip---G~~~----v~~~~~~l~-------~~~~~k~V~VIGgG~iGv 265 (558)
T PLN02546 209 DV-DG-----KLYTARNILIAVG---GRPFIPDIP---GIEH----AIDSDAALD-------LPSKPEKIAIVGGGYIAL 265 (558)
T ss_pred EE-CC-----EEEECCEEEEeCC---CCCCCCCCC---Chhh----ccCHHHHHh-------ccccCCeEEEECCCHHHH
Confidence 44 33 4689999999999 567888888 7542 333322221 124689999999999999
Q ss_pred HHHHHHhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHH
Q 009917 217 DIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEAD 296 (522)
Q Consensus 217 dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (522)
|+|..|+..+. +|+++.|.+. ++|... . .....
T Consensus 266 E~A~~L~~~g~---~Vtlv~~~~~-il~~~d-------~--------------------------------~~~~~---- 298 (558)
T PLN02546 266 EFAGIFNGLKS---DVHVFIRQKK-VLRGFD-------E--------------------------------EVRDF---- 298 (558)
T ss_pred HHHHHHHhcCC---eEEEEEeccc-cccccC-------H--------------------------------HHHHH----
Confidence 99999998764 4999998776 444322 0 00000
Q ss_pred HhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--Cc-E--EEcCCCceecccEEEE
Q 009917 297 IKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG-I--VVDGQTTPLKTDLVIL 370 (522)
Q Consensus 297 ~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~g-v--~~~dG~~~~~~D~VI~ 370 (522)
+.+.+++.+|+++.+. +.++.+ ++ + .+.+++. ..+|.||+
T Consensus 299 ---------------------------------l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~-~~~D~Viv 344 (558)
T PLN02546 299 ---------------------------------VAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTV-EGFSHVMF 344 (558)
T ss_pred ---------------------------------HHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEE-EecCEEEE
Confidence 1122334456666554 555542 22 3 3344443 56899999
Q ss_pred ecCCCCCcccccccccccccccccC-CCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 371 ATGFKGDVKLKNIFLSQTFQDYLAG-SPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 371 aTG~~~~~~l~~~~~~~~l~~~~~~-~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
|+|++++..++. +++.... +..+.+.... .+.++.||||++|.+.. ....+.+..|++.++..+.|.
T Consensus 345 a~G~~Pnt~~L~------le~~gl~~d~~G~I~VD~-~l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 345 ATGRKPNTKNLG------LEEVGVKMDKNGAIEVDE-YSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred eeccccCCCcCC------hhhcCCcCCCCCcEeECC-CceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999999976421 1111110 1223333322 23468999999996654 334678899999999998874
No 41
>PRK07846 mycothione reductase; Reviewed
Probab=99.93 E-value=4.6e-25 Score=227.37 Aligned_cols=310 Identities=14% Similarity=0.112 Sum_probs=185.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeec----CCCCCCCCCCCCCCh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFPDH 76 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (522)
++||+|||||++|.++|.. ..|.+|+|+|+ +.+||+|.+ |.|...+..++..+... .+-... ...-...
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~--~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDA--ELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccC--CCCcCCH
Confidence 3799999999999998876 45999999998 469999998 88887665444333211 111110 0011244
Q ss_pred hHHHHHHHHHHHhcCCc-cceE-ee-eeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCE
Q 009917 77 NQVLDYIQSYASHFDLR-KHIK-FN-RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDF 153 (522)
Q Consensus 77 ~~~~~yl~~~~~~~~l~-~~i~-~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~ 153 (522)
.++.++.....+++.-. .... +. ..|.-+.-.. . | .+..+|++.++ +++.||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a----------------~-~--~~~~~V~v~~g-----~~~~~d~ 131 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHA----------------R-F--IGPKTLRTGDG-----EEITADQ 131 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEE----------------E-E--ecCCEEEECCC-----CEEEeCE
Confidence 56666665555553110 0011 11 0111111100 0 0 01246777654 4789999
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceE
Q 009917 154 VILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233 (522)
Q Consensus 154 lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt 233 (522)
||+||| +.|..|++| |.+.. .+..+.+... ....+|+|+|||+|.+|+|+|..++..+. +||
T Consensus 132 lViATG---s~p~~p~i~---g~~~~--~~~~~~~~~~-------l~~~~~~vvIIGgG~iG~E~A~~l~~~G~---~Vt 193 (451)
T PRK07846 132 VVIAAG---SRPVIPPVI---ADSGV--RYHTSDTIMR-------LPELPESLVIVGGGFIAAEFAHVFSALGV---RVT 193 (451)
T ss_pred EEEcCC---CCCCCCCCC---CcCCc--cEEchHHHhh-------hhhcCCeEEEECCCHHHHHHHHHHHHcCC---eEE
Confidence 999999 568888888 64321 1222222221 12357999999999999999999998765 499
Q ss_pred EEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCc
Q 009917 234 VLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHS 313 (522)
Q Consensus 234 ~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 313 (522)
++.|++. ++|... .- +...+
T Consensus 194 li~~~~~-ll~~~d-------~~--------------------------------~~~~l-------------------- 213 (451)
T PRK07846 194 VVNRSGR-LLRHLD-------DD--------------------------------ISERF-------------------- 213 (451)
T ss_pred EEEcCCc-cccccC-------HH--------------------------------HHHHH--------------------
Confidence 9999876 334322 00 00000
Q ss_pred ccccccccceeccCCcccccccCCcEEEeecC-ceeEecC--c--EEEcCCCceecccEEEEecCCCCCccccccccccc
Q 009917 314 FLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQT 388 (522)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--g--v~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~ 388 (522)
.+.++ .+|+++.+. +.+++.+ + +.+.+|++ +++|.||+|||++|+.+++..-.. .
T Consensus 214 -----------------~~l~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~-i~~D~vl~a~G~~pn~~~l~~~~~-g 273 (451)
T PRK07846 214 -----------------TELAS-KRWDVRLGRNVVGVSQDGSGVTLRLDDGST-VEADVLLVATGRVPNGDLLDAAAA-G 273 (451)
T ss_pred -----------------HHHHh-cCeEEEeCCEEEEEEEcCCEEEEEECCCcE-eecCEEEEEECCccCccccCchhc-C
Confidence 01111 235555554 5566432 2 55668887 999999999999999765421000 0
Q ss_pred ccccccCCCCCCcccceeecCCCCCceEEEcccCCc-chhhhHHHHHHHHHHHHcCC
Q 009917 389 FQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-SNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 389 l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~ 444 (522)
++ . ++.+.+..... +.++.||+|++|.+... ...+.+..|++.++..+.+.
T Consensus 274 l~---~-~~~G~i~Vd~~-~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 274 VD---V-DEDGRVVVDEY-QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred ce---E-CCCCcEeECCC-cccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 00 0 12232333333 34789999999976543 34568899999999988764
No 42
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.93 E-value=4.3e-25 Score=240.72 Aligned_cols=295 Identities=18% Similarity=0.211 Sum_probs=190.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhc----CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCCh
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDH 76 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~----g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (522)
|.+++|||||+|++|+.+|..|++. +++|+||++.+.++ |..+.+ +.. |.. ...
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~------Y~r~~L--~~~---~~~-----------~~~ 58 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA------YDRVHL--SSY---FSH-----------HTA 58 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc------ccCCcc--hHh---HcC-----------CCH
Confidence 6677999999999999999999864 47899999987753 111111 000 000 012
Q ss_pred hHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEE
Q 009917 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (522)
Q Consensus 77 ~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvv 156 (522)
+++......+.++.++ .++.+++|+.++... ..|++.++ .++.||+||+
T Consensus 59 ~~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~~------------------------~~V~~~~G-----~~i~yD~LVI 107 (847)
T PRK14989 59 EELSLVREGFYEKHGI--KVLVGERAITINRQE------------------------KVIHSSAG-----RTVFYDKLIM 107 (847)
T ss_pred HHccCCCHHHHHhCCC--EEEcCCEEEEEeCCC------------------------cEEEECCC-----cEEECCEEEE
Confidence 3333334455566787 788888999998754 46776665 5799999999
Q ss_pred eecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEE
Q 009917 157 CVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLY 236 (522)
Q Consensus 157 AtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~ 236 (522)
||| +.|..|++| |.+.. .++......+... .......+++++|||+|.+|+|+|..|+..+.+ |+++.
T Consensus 108 ATG---s~p~~p~ip---G~~~~--~v~~~rt~~d~~~-l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~---VtvVe 175 (847)
T PRK14989 108 ATG---SYPWIPPIK---GSETQ--DCFVYRTIEDLNA-IEACARRSKRGAVVGGGLLGLEAAGALKNLGVE---THVIE 175 (847)
T ss_pred CCC---CCcCCCCCC---CCCCC--CeEEECCHHHHHH-HHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEe
Confidence 999 467888888 66532 1332222222110 001234689999999999999999999988754 99999
Q ss_pred cccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccc
Q 009917 237 RTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQ 316 (522)
Q Consensus 237 r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 316 (522)
+.+. ++|... +. .....
T Consensus 176 ~~~~-ll~~~l------d~--------------------------------~~~~~------------------------ 192 (847)
T PRK14989 176 FAPM-LMAEQL------DQ--------------------------------MGGEQ------------------------ 192 (847)
T ss_pred cccc-chhhhc------CH--------------------------------HHHHH------------------------
Confidence 9876 444221 00 00001
Q ss_pred cccccceeccCCcccccccCCcEEEeecC-ceeEecC------cEEEcCCCceecccEEEEecCCCCCcccccccccccc
Q 009917 317 ELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED------GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTF 389 (522)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~------gv~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l 389 (522)
+.+.+++.+|+++.+. ++++.++ .++++||++ +++|.||+|+|++|+..|.+...
T Consensus 193 -------------l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~-i~~D~Vv~A~G~rPn~~L~~~~G---- 254 (847)
T PRK14989 193 -------------LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSE-LEVDFIVFSTGIRPQDKLATQCG---- 254 (847)
T ss_pred -------------HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCE-EEcCEEEECCCcccCchHHhhcC----
Confidence 1122334456666654 5666432 377889998 99999999999999976543211
Q ss_pred cccccCCCCCCcccceeecCCCCCceEEEcccCCc-----chhhhHHHHHHHHHHHHcCCC
Q 009917 390 QDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-----SNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 390 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~ia~~l~g~~ 445 (522)
+.-++.+.+.+.. .+.++.||||++|-+... ..+..+..||+.+|..|.|..
T Consensus 255 ---l~~~~~G~I~VD~-~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 255 ---LAVAPRGGIVIND-SCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred ---ccCCCCCcEEECC-CCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 1012223343433 345679999999955421 234567889999999998863
No 43
>PTZ00058 glutathione reductase; Provisional
Probab=99.93 E-value=3.7e-25 Score=231.13 Aligned_cols=315 Identities=13% Similarity=0.164 Sum_probs=185.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeec----CCCCCCCCCCCCCCh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFPDH 76 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (522)
++||+|||||++|+++|..+.+.|.+|+|||++ .+||+|.+ |.|...+...+...... .+.+.. ..-...
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~---~~~~d~ 123 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT---QFSFNL 123 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc---cCccCH
Confidence 479999999999999999999999999999986 79999988 88887766554433211 111110 000111
Q ss_pred hHHHHHHH-----------HHHHhcCCccceEeee-eEEE-----EEEcCCCCcccccccccCCCCCCCCCCCcEEEE--
Q 009917 77 NQVLDYIQ-----------SYASHFDLRKHIKFNR-KVVG-----IEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA-- 137 (522)
Q Consensus 77 ~~~~~yl~-----------~~~~~~~l~~~i~~~~-~V~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 137 (522)
..+.++.. +..++.++ .+..++ ++.+ |.+... ..+... ..+++.-+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~G~a~f~~~~~v~v~~~~~----------~~~~~~-~~~~~~~~v~~~ 190 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNV--EYFEGKGSLLSENQVLIKKVSQ----------VDGEAD-ESDDDEVTIVSA 190 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCc--EEEEEEEEEecCCEEEeecccc----------cccccc-ccccccceeeec
Confidence 22222222 22333343 333322 1111 100000 000000 0011222332
Q ss_pred ----EecCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCC
Q 009917 138 ----VEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQK 213 (522)
Q Consensus 138 ----~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~ 213 (522)
..++ .+++||+||+||| +.|..|++| |.+ .++++.++..+ ..+++|+|||+|.
T Consensus 191 ~~~~~~~g-----~~i~ad~lVIATG---S~P~~P~Ip---G~~----~v~ts~~~~~l--------~~pk~VvIIGgG~ 247 (561)
T PTZ00058 191 GVSQLDDG-----QVIEGKNILIAVG---NKPIFPDVK---GKE----FTISSDDFFKI--------KEAKRIGIAGSGY 247 (561)
T ss_pred cceecCCC-----cEEECCEEEEecC---CCCCCCCCC---Cce----eEEEHHHHhhc--------cCCCEEEEECCcH
Confidence 1122 4699999999999 568888888 754 24555444331 2389999999999
Q ss_pred CHHHHHHHHhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHH
Q 009917 214 SALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFV 293 (522)
Q Consensus 214 sg~dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (522)
+|+|+|..++..+.+ ||++.|.+. ++|..+ ...
T Consensus 248 iGlE~A~~l~~~G~~---Vtli~~~~~-il~~~d-------~~i------------------------------------ 280 (561)
T PTZ00058 248 IAVELINVVNRLGAE---SYIFARGNR-LLRKFD-------ETI------------------------------------ 280 (561)
T ss_pred HHHHHHHHHHHcCCc---EEEEEeccc-ccccCC-------HHH------------------------------------
Confidence 999999999988754 999999876 445432 000
Q ss_pred HHHHhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecC---c--EEEcCCCceecccE
Q 009917 294 EADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED---G--IVVDGQTTPLKTDL 367 (522)
Q Consensus 294 ~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~---g--v~~~dG~~~~~~D~ 367 (522)
.+.+.+.+++.+|+++.+. +.+++++ + +.+.++.+.+++|.
T Consensus 281 ---------------------------------~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~ 327 (561)
T PTZ00058 281 ---------------------------------INELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDY 327 (561)
T ss_pred ---------------------------------HHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCE
Confidence 0001122334456666554 5556432 2 33445443399999
Q ss_pred EEEecCCCCCcccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC------------------------
Q 009917 368 VILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES------------------------ 423 (522)
Q Consensus 368 VI~aTG~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~------------------------ 423 (522)
||+|||++|+..++... ........+.+.... .+.++.||+|++|.+..
T Consensus 328 VlvA~Gr~Pn~~~L~l~------~~~~~~~~G~I~VDe-~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~ 400 (561)
T PTZ00058 328 VIYCVGRSPNTEDLNLK------ALNIKTPKGYIKVDD-NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKK 400 (561)
T ss_pred EEECcCCCCCccccCcc------ccceecCCCeEEECc-CCccCCCCEEEeEeccCcccccccccccccccccccccccc
Confidence 99999999997654321 100101223233322 34578999999996544
Q ss_pred -----------cchhhhHHHHHHHHHHHHcCC
Q 009917 424 -----------ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 424 -----------~~~~~~~e~qa~~ia~~l~g~ 444 (522)
....+.|..|++.++..+.|.
T Consensus 401 ~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 401 KENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 223567999999999998774
No 44
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.93 E-value=1.3e-24 Score=226.31 Aligned_cols=306 Identities=15% Similarity=0.165 Sum_probs=180.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceee----cCCCCCCCCCCCCCCh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDSVTTDFPDH 76 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 76 (522)
++||+|||||++|+++|..|.+.|.+|+|||+ +.+||+|.. ++|...+......+.. ..+.... .....+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~--~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEV--ENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCC--CCCcCCH
Confidence 37999999999999999999999999999999 889999987 7776554433332221 1111110 0111222
Q ss_pred hHHHHHHHHHH-----------HhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCc
Q 009917 77 NQVLDYIQSYA-----------SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (522)
Q Consensus 77 ~~~~~yl~~~~-----------~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~ 145 (522)
..+.++.+... ++.++ .+..+ ++..++ .+.+.|...++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~~------------------------~~~~~v~~~~g---- 126 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKV--TVIKG-EAKFLD------------------------PGTVLVTGENG---- 126 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc------------------------CCEEEEecCCC----
Confidence 33433333332 22333 22222 222221 12244443332
Q ss_pred eeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeec-cCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhh
Q 009917 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSM-DYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTT 224 (522)
Q Consensus 146 ~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~-~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~ 224 (522)
..++.||+||+|||. .|+.|++| . + +.+..+++. +... ....+++|+|||+|.+|+|+|..|++
T Consensus 127 ~~~~~~d~lVlAtG~---~p~~~~~~-~-~---~~~~~~~~~~~~~~-------~~~~~~~vvViGgG~~g~e~A~~l~~ 191 (461)
T TIGR01350 127 EETLTAKNIIIATGS---RPRSLPGP-F-D---FDGEVVITSTGALN-------LKEVPESLVIIGGGVIGIEFASIFAS 191 (461)
T ss_pred cEEEEeCEEEEcCCC---CCCCCCCC-C-C---CCCceEEcchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHH
Confidence 147899999999994 56666543 0 1 222223332 2221 12357899999999999999999998
Q ss_pred hcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhcccc
Q 009917 225 ANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLA 304 (522)
Q Consensus 225 ~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (522)
.+. +||++.|.+. ++|... ... ..
T Consensus 192 ~g~---~Vtli~~~~~-~l~~~~-------~~~--------------------------------~~------------- 215 (461)
T TIGR01350 192 LGS---KVTVIEMLDR-ILPGED-------AEV--------------------------------SK------------- 215 (461)
T ss_pred cCC---cEEEEEcCCC-CCCCCC-------HHH--------------------------------HH-------------
Confidence 765 4999999876 444321 000 00
Q ss_pred ccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEe--cCcE--EEcCC--CceecccEEEEecCCCCC
Q 009917 305 KFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDGI--VVDGQ--TTPLKTDLVILATGFKGD 377 (522)
Q Consensus 305 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~gv--~~~dG--~~~~~~D~VI~aTG~~~~ 377 (522)
.+.+.+++.+|+++.+. +.++. ++++ .+.+| ++ +++|.||+|||++|+
T Consensus 216 ------------------------~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~-i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 216 ------------------------VVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETET-LTGEKVLVAVGRKPN 270 (461)
T ss_pred ------------------------HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEE-EEeCEEEEecCCccc
Confidence 01122334456666654 55554 2333 34466 35 999999999999998
Q ss_pred ccccccccccccccccc-CCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCCC
Q 009917 378 VKLKNIFLSQTFQDYLA-GSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 378 ~~l~~~~~~~~l~~~~~-~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~~ 445 (522)
...+. +++... .+..+.+... ..+.++.||+|++|.... +.....+..|++.+|..+.++.
T Consensus 271 ~~~l~------~~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 271 TEGLG------LENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred CCCCC------cHhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 65210 111100 0122223232 233457899999997654 3346778999999999997753
No 45
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.93 E-value=2.5e-24 Score=223.28 Aligned_cols=311 Identities=15% Similarity=0.148 Sum_probs=185.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCcccee----ecCCCCCCC-CCCCCCCh
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDS-VTTDFPDH 76 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~ 76 (522)
++|+|||||++|+.+|..+.+.|.+|+++|++ .+||+|.+ |.|+..+......+. ...+.+... ........
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 48999999999999999999999999999986 58999987 777655432221111 001111000 00001122
Q ss_pred hHHHHHH-----------HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCc
Q 009917 77 NQVLDYI-----------QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (522)
Q Consensus 77 ~~~~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~ 145 (522)
..+.++. +..++++++ ++..+ ++..++... +.+...|+..+ |+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~~~~~~--------------------~~~~v~V~~~~---g~ 134 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGV--RVIAG-RGRLIDPGL--------------------GPHRVKVTTAD---GG 134 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEeeccc--------------------CCCEEEEEeCC---Cc
Confidence 2333333 333444454 44333 444433111 01224444333 33
Q ss_pred eeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhh
Q 009917 146 TEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (522)
Q Consensus 146 ~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~ 225 (522)
.+++.||+||+|||+ .|..|+.+ +.+. ..++++.+..+. ...+++|+|||+|.+|+|+|..|++.
T Consensus 135 ~~~~~~d~lViATGs---~p~~~p~~---~~~~--~~v~~~~~~~~~-------~~~~~~vvVIGgG~ig~E~A~~l~~~ 199 (466)
T PRK07845 135 EETLDADVVLIATGA---SPRILPTA---EPDG--ERILTWRQLYDL-------DELPEHLIVVGSGVTGAEFASAYTEL 199 (466)
T ss_pred eEEEecCEEEEcCCC---CCCCCCCC---CCCC--ceEEeehhhhcc-------cccCCeEEEECCCHHHHHHHHHHHHc
Confidence 347899999999994 56655443 2221 134554443321 13468999999999999999999987
Q ss_pred cCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccc
Q 009917 226 NGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAK 305 (522)
Q Consensus 226 ~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (522)
+. +||++.+.+. ++|... . . ...
T Consensus 200 g~---~Vtli~~~~~-~l~~~d---~----~--------------------------------~~~-------------- 222 (466)
T PRK07845 200 GV---KVTLVSSRDR-VLPGED---A----D--------------------------------AAE-------------- 222 (466)
T ss_pred CC---eEEEEEcCCc-CCCCCC---H----H--------------------------------HHH--------------
Confidence 65 4999998876 555432 0 0 000
Q ss_pred cCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEe--cCc--EEEcCCCceecccEEEEecCCCCCccc
Q 009917 306 FGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFC--EDG--IVVDGQTTPLKTDLVILATGFKGDVKL 380 (522)
Q Consensus 306 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~--~~g--v~~~dG~~~~~~D~VI~aTG~~~~~~l 380 (522)
.+.+.+++.+|+++.+. +.++. +++ +.+.+|++ +++|.||+|+|++|+..+
T Consensus 223 -----------------------~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~-l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 223 -----------------------VLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRT-VEGSHALMAVGSVPNTAG 278 (466)
T ss_pred -----------------------HHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcE-EEecEEEEeecCCcCCCC
Confidence 01122334456666554 66664 233 45678887 999999999999999764
Q ss_pred ccccccccccccccC-CCCCCcccceeecCCCCCceEEEcccCCc-chhhhHHHHHHHHHHHHcCC
Q 009917 381 KNIFLSQTFQDYLAG-SPTEKLPLYREIIHPQIPQLAIIGFSESI-SNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 381 ~~~~~~~~l~~~~~~-~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~ 444 (522)
+.. .+.... ++.+.+..... +.++.||+|++|.+... ...+.+..|++.++..+.|.
T Consensus 279 l~l------~~~gl~~~~~G~i~Vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 279 LGL------EEAGVELTPSGHITVDRV-SRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred CCc------hhhCceECCCCcEeECCC-cccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 211 111110 22233333333 35689999999976543 34678899999999988764
No 46
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.93 E-value=3.8e-24 Score=221.93 Aligned_cols=316 Identities=19% Similarity=0.227 Sum_probs=184.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC--------Cccccccc--cccceeecCCccceee----cCCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--------DIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDS 68 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~--------~~Gg~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~ 68 (522)
++||+|||||++|+.+|..+++.|.+|+|+|+.. .+||+|.+ |+|...+...+..+.- ..+-+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4799999999999999999999999999999731 58999988 8887765544332211 11111100
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCccceEee-eeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCcee
Q 009917 69 VTTDFPDHNQVLDYIQSYASHFDLRKHIKFN-RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (522)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~ 147 (522)
...-.....+.++..+..+++.-.-.-.+. ..|.-+.-.. .|.+.+ +|.+.+. ++...
T Consensus 82 -~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-----------------~f~~~~--~v~v~~~-~g~~~ 140 (484)
T TIGR01438 82 -ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-----------------EFVDKH--RIKATNK-KGKEK 140 (484)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-----------------EEcCCC--EEEEecc-CCCce
Confidence 001122344444444444332100000010 1111111110 000112 3444432 13335
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcC
Q 009917 148 VHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227 (522)
Q Consensus 148 ~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~ 227 (522)
++.||+||+||| +.|+.|++| |.+.+ .+++.+.... ...+++|+|||+|.+|+|+|..++..+.
T Consensus 141 ~~~~d~lVIATG---s~p~~p~ip---G~~~~---~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~~G~ 204 (484)
T TIGR01438 141 IYSAERFLIATG---ERPRYPGIP---GAKEL---CITSDDLFSL-------PYCPGKTLVVGASYVALECAGFLAGIGL 204 (484)
T ss_pred EEEeCEEEEecC---CCCCCCCCC---Cccce---eecHHHhhcc-------cccCCCEEEECCCHHHHHHHHHHHHhCC
Confidence 799999999999 567888888 76432 2333333221 1346789999999999999999998875
Q ss_pred CCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccC
Q 009917 228 LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFG 307 (522)
Q Consensus 228 ~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (522)
+ ||++.|. . ++|..+ ..+ ..
T Consensus 205 ~---Vtli~~~-~-~l~~~d-------~~~--------------------------------~~---------------- 224 (484)
T TIGR01438 205 D---VTVMVRS-I-LLRGFD-------QDC--------------------------------AN---------------- 224 (484)
T ss_pred c---EEEEEec-c-cccccC-------HHH--------------------------------HH----------------
Confidence 4 9999874 3 444432 000 00
Q ss_pred CCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--Cc--EEEcCCC---ceecccEEEEecCCCCCcc
Q 009917 308 MVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQT---TPLKTDLVILATGFKGDVK 379 (522)
Q Consensus 308 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~g--v~~~dG~---~~~~~D~VI~aTG~~~~~~ 379 (522)
.+.+.+++.+|+++.+. +.++.. ++ |++++|+ + +++|.||+|+|++|+..
T Consensus 225 ---------------------~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~-i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 225 ---------------------KVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIE-EEYDTVLLAIGRDACTR 282 (484)
T ss_pred ---------------------HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceE-EEeCEEEEEecCCcCCC
Confidence 01122334456666554 444432 22 5566653 5 99999999999999976
Q ss_pred cccccccccccccccC-CC-CCCcccceeecCCCCCceEEEcccCC--cchhhhHHHHHHHHHHHHcCC
Q 009917 380 LKNIFLSQTFQDYLAG-SP-TEKLPLYREIIHPQIPQLAIIGFSES--ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 380 l~~~~~~~~l~~~~~~-~~-~~~~~ly~~~~~~~~pnl~~iG~~~~--~~~~~~~e~qa~~ia~~l~g~ 444 (522)
++.. ++.... .. .+.+. ....+.++.||+|++|.+.. ....+.+..|++.+++.+.+.
T Consensus 283 ~l~l------~~~gv~~~~~~G~I~-Vd~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 283 KLNL------ENVGVKINKKTGKIP-ADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred cCCc------ccccceecCcCCeEe-cCCCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence 4321 110000 11 12222 23335578999999997643 334677899999999998763
No 47
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.93 E-value=2.3e-24 Score=233.25 Aligned_cols=298 Identities=19% Similarity=0.240 Sum_probs=177.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||||||++|..|++.|++|+|||+.+.+||.+.+..|+.+ ...++..+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~R------------------------lp~evL~~ 594 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFR------------------------IPAELIQH 594 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeeccccc------------------------ccHHHHHH
Confidence 378999999999999999999999999999999999998765333211 11344455
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.+.++++ ++++++.| .++.. +. ....||+||||||+.
T Consensus 595 die~l~~~GV--e~~~gt~V-di~le-------------------------------~L-----~~~gYDaVILATGA~- 634 (1019)
T PRK09853 595 DIEFVKAHGV--KFEFGCSP-DLTVE-------------------------------QL-----KNEGYDYVVVAIGAD- 634 (1019)
T ss_pred HHHHHHHcCC--EEEeCcee-EEEhh-------------------------------hh-----eeccCCEEEECcCCC-
Confidence 5566667788 78888766 22211 11 245699999999975
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccccee
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~ 242 (522)
.|..+.+| |.+. .++++.++.............||+|+|||+|.+|+|+|..+.+.++. ++|+++.|++.-.
T Consensus 635 -~~~~l~Ip---G~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGa-keVTLVyRr~~~~ 706 (1019)
T PRK09853 635 -KNGGLKLE---GGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGV-EKVTVVYRRTKQE 706 (1019)
T ss_pred -CCCCCCCC---CccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCC-ceEEEEEccCccc
Confidence 35555566 5431 24444333211000011234689999999999999999988876442 4699999986433
Q ss_pred ecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccccc
Q 009917 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (522)
Q Consensus 243 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 322 (522)
+|... +.+.. .+.... .+... +
T Consensus 707 MPA~~---------------------------------------eEle~----AleeGV-----e~~~~---------~- 728 (1019)
T PRK09853 707 MPAWR---------------------------------------EEYEE----ALEDGV-----EFKEL---------L- 728 (1019)
T ss_pred ccccH---------------------------------------HHHHH----HHHcCC-----EEEeC---------C-
Confidence 33321 00000 000000 00000 0
Q ss_pred eeccCCcccccc-cCCcEEEeecCceeEecCc----EEEcCCCceecccEEEEecCCCCCcccccccccccccccccCCC
Q 009917 323 TITVPEKFYDKV-EEGSIILKKSQDFSFCEDG----IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSP 397 (522)
Q Consensus 323 ~~~~~~~~~~~l-~~g~v~v~~~~i~~~~~~g----v~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~~~~ 397 (522)
. ...+ .+|++.+....+...+++| +...++.+ +++|.||+|+|++++..+++... +. . +.
T Consensus 729 ------~-p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~-I~aD~VIvAIG~~Pntelle~~G---L~---l-d~ 793 (1019)
T PRK09853 729 ------N-PESFDADGTLTCRVMKLGEPDESGRRRPVETGETVT-LEADTVITAIGEQVDTELLKANG---IP---L-DK 793 (1019)
T ss_pred ------c-eEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEE-EEeCEEEECCCCcCChhHHHhcC---cc---c-cC
Confidence 0 0011 1333333211111112222 22233445 99999999999999876543211 10 0 11
Q ss_pred CCCcccceeecCCCCCceEEEcccC-CcchhhhHHHHHHHHHHHHcCCCC
Q 009917 398 TEKLPLYREIIHPQIPQLAIIGFSE-SISNLYTSEMRCRWLAELLDGAVK 446 (522)
Q Consensus 398 ~~~~~ly~~~~~~~~pnl~~iG~~~-~~~~~~~~e~qa~~ia~~l~g~~~ 446 (522)
.+.+.. ...+.++.||+|++|... .+..+..|..|++.+|..+.+...
T Consensus 794 ~G~I~V-DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 794 KGWPVV-DANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCCEEe-CCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 222222 334456889999999765 345667889999999999877654
No 48
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=4.9e-24 Score=220.92 Aligned_cols=309 Identities=14% Similarity=0.149 Sum_probs=179.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceee----cCCCCCCCCCCCCCChhH
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF----SDYPWPDSVTTDFPDHNQ 78 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 78 (522)
+|+|||||++|+++|..+++.|.+|+|+|++ .+||+|.+ |.|...+..+...+.. ..+..+............
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 7999999999999999999999999999986 58999887 7776655333222111 111111000011123344
Q ss_pred HHHHHHHHHHhc--CC-----ccceEe-eeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEE
Q 009917 79 VLDYIQSYASHF--DL-----RKHIKF-NRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (522)
Q Consensus 79 ~~~yl~~~~~~~--~l-----~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~ 150 (522)
+.++..+..++. ++ ...+.+ ..++..++ .+...|+..++ .+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~------------------------~~~v~v~~~~~----~~~~~ 132 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET------------------------DHRVRVEYGDK----EEVVD 132 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcc------------------------CCEEEEeeCCC----cEEEE
Confidence 544444443331 11 001111 12222221 12234443222 24699
Q ss_pred eCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCC
Q 009917 151 VDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN 230 (522)
Q Consensus 151 ~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~ 230 (522)
||+||+|||+ .|..|+++ +.+. ..++++.+.... ...+++|+|||+|.+|+|+|..++..+.
T Consensus 133 ~d~lviATGs---~p~~~p~~---~~~~--~~v~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~~g~--- 194 (458)
T PRK06912 133 AEQFIIAAGS---EPTELPFA---PFDG--KWIINSKHAMSL-------PSIPSSLLIVGGGVIGCEFASIYSRLGT--- 194 (458)
T ss_pred CCEEEEeCCC---CCCCCCCC---CCCC--CeEEcchHHhCc-------cccCCcEEEECCCHHHHHHHHHHHHcCC---
Confidence 9999999994 56666555 4332 124554433321 2346899999999999999999988764
Q ss_pred ceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCC
Q 009917 231 PCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVP 310 (522)
Q Consensus 231 ~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 310 (522)
+||++.|.+. ++|... .- +..
T Consensus 195 ~Vtli~~~~~-ll~~~d-------~e--------------------------------~~~------------------- 215 (458)
T PRK06912 195 KVTIVEMAPQ-LLPGED-------ED--------------------------------IAH------------------- 215 (458)
T ss_pred eEEEEecCCC-cCcccc-------HH--------------------------------HHH-------------------
Confidence 4999999876 444321 00 000
Q ss_pred CCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecCc--EEEc-CCC-ceecccEEEEecCCCCCcccccccc
Q 009917 311 KHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG--IVVD-GQT-TPLKTDLVILATGFKGDVKLKNIFL 385 (522)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~g--v~~~-dG~-~~~~~D~VI~aTG~~~~~~l~~~~~ 385 (522)
.+.+.+++.+|+++.+. +.+++.++ +.+. +|+ ..+++|.||+|||++|+...+..
T Consensus 216 ------------------~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l-- 275 (458)
T PRK06912 216 ------------------ILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNL-- 275 (458)
T ss_pred ------------------HHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCc--
Confidence 01122334456666654 66665432 4443 443 23899999999999998653211
Q ss_pred cccccccccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCC
Q 009917 386 SQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 386 ~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
.........+.+..... +.++.||+|++|.+.. ....+.+..|++.++..+.|.
T Consensus 276 ----~~~gv~~~~~gi~Vd~~-~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 276 ----EKAGVQFSNKGISVNEH-MQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred ----hhcCceecCCCEEeCCC-eecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 10000011122333222 3357899999997654 345678899999999999874
No 49
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.92 E-value=2.1e-24 Score=235.75 Aligned_cols=289 Identities=15% Similarity=0.207 Sum_probs=184.3
Q ss_pred EEEECCChhHHHHHHHHHhc---CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 6 IAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 6 vvIIGaG~aGl~~a~~l~~~---g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
|||||+|+||+.+|.+|++. +++|+|||+.+.++ |.... .+. + .....+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~------y~r~~--L~~----~---------l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN------YNRIL--LSS----V---------LQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC------ccccc--ccH----H---------HCCCCCHHHccCC
Confidence 68999999999999999875 46899999988753 11100 000 0 0000122333333
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..++.++.++ +++++++|+.|+... +.|++.++ .++.||+||+|||
T Consensus 60 ~~~~~~~~gv--~~~~g~~V~~Id~~~------------------------k~V~~~~g-----~~~~yD~LVlATG--- 105 (785)
T TIGR02374 60 SKDWYEKHGI--TLYTGETVIQIDTDQ------------------------KQVITDAG-----RTLSYDKLILATG--- 105 (785)
T ss_pred CHHHHHHCCC--EEEcCCeEEEEECCC------------------------CEEEECCC-----cEeeCCEEEECCC---
Confidence 3445566787 888899999998754 56777665 5799999999999
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccccee
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~ 242 (522)
+.|+.|++| |.+. .+ +++.....+... .......+++|+|||+|.+|+|+|..|+..+. +|+++.+.+. +
T Consensus 106 s~p~~p~ip---G~~~-~~-v~~~rt~~d~~~-i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~---~Vtvv~~~~~-l 175 (785)
T TIGR02374 106 SYPFILPIP---GADK-KG-VYVFRTIEDLDA-IMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGM---DVSVIHHAPG-L 175 (785)
T ss_pred CCcCCCCCC---CCCC-CC-EEEeCCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEccCCc-h
Confidence 467888888 7553 22 333222211110 01122468999999999999999999998765 4999998876 3
Q ss_pred ecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccccc
Q 009917 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (522)
Q Consensus 243 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 322 (522)
+++.. +. .....
T Consensus 176 l~~~l------d~--------------------------------~~~~~------------------------------ 187 (785)
T TIGR02374 176 MAKQL------DQ--------------------------------TAGRL------------------------------ 187 (785)
T ss_pred hhhhc------CH--------------------------------HHHHH------------------------------
Confidence 33211 00 00000
Q ss_pred eeccCCcccccccCCcEEEeecC-ceeEecC----cEEEcCCCceecccEEEEecCCCCCcccccccccccccccccCCC
Q 009917 323 TITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSP 397 (522)
Q Consensus 323 ~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----gv~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~~~~ 397 (522)
+.+.+++.+|+++.+. +.++.++ +|+++||++ +++|.||+|+|++|+..+..... +. .
T Consensus 188 -------l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~-i~~D~Vi~a~G~~Pn~~la~~~g---l~-----~- 250 (785)
T TIGR02374 188 -------LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSS-LEADLIVMAAGIRPNDELAVSAG---IK-----V- 250 (785)
T ss_pred -------HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCE-EEcCEEEECCCCCcCcHHHHhcC---Cc-----c-
Confidence 1112333456666554 5555432 478899998 99999999999999976543211 10 1
Q ss_pred CCCcccceeecCCCCCceEEEcccCCc-----chhhhHHHHHHHHHHHHcCCC
Q 009917 398 TEKLPLYREIIHPQIPQLAIIGFSESI-----SNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 398 ~~~~~ly~~~~~~~~pnl~~iG~~~~~-----~~~~~~e~qa~~ia~~l~g~~ 445 (522)
++.+.... .+.++.||||++|.+... ..+..+..||+.+|..|.|..
T Consensus 251 ~ggI~Vd~-~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 251 NRGIIVND-SMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred CCCEEECC-CcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 12222222 245689999999955321 124457789999999998864
No 50
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=8.6e-24 Score=219.95 Aligned_cols=313 Identities=14% Similarity=0.149 Sum_probs=183.0
Q ss_pred CC-CCcEEEECCChhHHHHHHHHHhcCCceEEEec------CCCccccccc--cccceeecCCcccee-e----cCCCCC
Q 009917 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA------RSDIGGAWIK--TVETTMLQTPKQLYQ-F----SDYPWP 66 (522)
Q Consensus 1 m~-~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~------~~~~Gg~w~~--~~~~~~~~~~~~~~~-~----~~~~~~ 66 (522)
|+ .+||+|||||++|+++|..+++.|.+|+|+|+ ...+||+|.+ ++|...+......+. + ..+...
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 54 47999999999999999999999999999998 3679999987 666544322222111 0 111111
Q ss_pred CCCCCCCCChhHHHHHH-----------HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEE
Q 009917 67 DSVTTDFPDHNQVLDYI-----------QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT 135 (522)
Q Consensus 67 ~~~~~~~~~~~~~~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (522)
.. ..-....++.+.. ....+..++ .+. ..++..++... +.++
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~g~~~~~~~~~----------------------~~~~ 133 (475)
T PRK06327 81 VD--GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKI--TVL-KGRGSFVGKTD----------------------AGYE 133 (475)
T ss_pred CC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEecCCC----------------------CCCE
Confidence 00 0001122233222 222333333 222 33444444332 3477
Q ss_pred EEEecCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCH
Q 009917 136 VAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSA 215 (522)
Q Consensus 136 v~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg 215 (522)
|.+...+ + .+++||+||+|||+ .|+.| | +.. +.+..+++.+... .....+|+|+|||+|.+|
T Consensus 134 v~v~~~~-~--~~~~~d~lViATGs---~p~~~--p---~~~-~~~~~~~~~~~~~------~~~~~~~~vvVvGgG~~g 195 (475)
T PRK06327 134 IKVTGED-E--TVITAKHVIIATGS---EPRHL--P---GVP-FDNKIILDNTGAL------NFTEVPKKLAVIGAGVIG 195 (475)
T ss_pred EEEecCC-C--eEEEeCEEEEeCCC---CCCCC--C---CCC-CCCceEECcHHHh------cccccCCeEEEECCCHHH
Confidence 8775421 1 47999999999995 45433 2 222 2233334332211 112357999999999999
Q ss_pred HHHHHHHhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHH
Q 009917 216 LDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEA 295 (522)
Q Consensus 216 ~dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (522)
+|+|..+++.+. +||++.|++. ++|..+ ..+ .
T Consensus 196 ~E~A~~l~~~g~---~Vtli~~~~~-~l~~~d-------~~~--------------------------------~----- 227 (475)
T PRK06327 196 LELGSVWRRLGA---EVTILEALPA-FLAAAD-------EQV--------------------------------A----- 227 (475)
T ss_pred HHHHHHHHHcCC---eEEEEeCCCc-cCCcCC-------HHH--------------------------------H-----
Confidence 999999998765 4999999876 344321 000 0
Q ss_pred HHhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecC--c--EEEcC--CC-ceecccE
Q 009917 296 DIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDG--QT-TPLKTDL 367 (522)
Q Consensus 296 ~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~--g--v~~~d--G~-~~~~~D~ 367 (522)
+.+.+.+++.+|+++.+. +.++..+ + +.+.+ |+ ..+++|.
T Consensus 228 --------------------------------~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~ 275 (475)
T PRK06327 228 --------------------------------KEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDK 275 (475)
T ss_pred --------------------------------HHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCE
Confidence 001122333456666554 6666533 2 44444 32 2389999
Q ss_pred EEEecCCCCCccccccccccccccc-ccCCCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCCC
Q 009917 368 VILATGFKGDVKLKNIFLSQTFQDY-LAGSPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 368 VI~aTG~~~~~~l~~~~~~~~l~~~-~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~~ 445 (522)
||+|||++|+...+.. +.. +.-+..+.+..... +.++.||+|++|.+.. +.....+..|++.++..+.|..
T Consensus 276 vl~a~G~~p~~~~l~~------~~~g~~~~~~G~i~vd~~-~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 276 LIVSIGRVPNTDGLGL------EAVGLKLDERGFIPVDDH-CRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred EEEccCCccCCCCCCc------HhhCceeCCCCeEeECCC-CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 9999999999653211 000 00012233333333 3467899999996643 3456788999999999998753
No 51
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.92 E-value=2.5e-24 Score=217.30 Aligned_cols=289 Identities=15% Similarity=0.147 Sum_probs=177.8
Q ss_pred cEEEECCChhHHHHHHHHHhc---CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHH
Q 009917 5 QIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~---g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (522)
+|||||||+||+.+|.+|+++ +.+|+|||+++..- |... .+.. .....+.+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~------~~~~---------------~~~~-~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP------YSGM---------------LPGM-IAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc------ccch---------------hhHH-HheeCCHHHhcc
Confidence 589999999999999999753 68999999876520 0000 0000 001112345655
Q ss_pred HHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 82 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
.+.++++++++ ++.. .+|++++.+. ..|.+.++ +++.||+||+|||
T Consensus 59 ~~~~~~~~~gv--~~~~-~~v~~id~~~------------------------~~V~~~~g-----~~~~yD~LviAtG-- 104 (364)
T TIGR03169 59 DLRRLARQAGA--RFVI-AEATGIDPDR------------------------RKVLLANR-----PPLSYDVLSLDVG-- 104 (364)
T ss_pred cHHHHHHhcCC--EEEE-EEEEEEeccc------------------------CEEEECCC-----CcccccEEEEccC--
Confidence 66777777777 5544 5899998764 35777765 4689999999999
Q ss_pred CCCCCCCCCCCCCCCCccCceEEeeccCCCCch------HhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCC---CCce
Q 009917 162 SDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY------EAAANLVKGKRVTVVGLQKSALDIAMECTTANGL---ENPC 232 (522)
Q Consensus 162 s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~------~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~---~~~V 232 (522)
+.|..|.+| |.... ++......+... +.......+|+|+|||+|.+|+|+|..|+....+ ..+|
T Consensus 105 -~~~~~~~i~---g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V 177 (364)
T TIGR03169 105 -STTPLSGVE---GAADL---AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQV 177 (364)
T ss_pred -CCCCCCCCC---ccccc---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceE
Confidence 467788787 63321 111111110000 0000112468999999999999999999864211 1359
Q ss_pred EEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCC
Q 009917 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (522)
Q Consensus 233 t~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 312 (522)
+++ +.+. +++... . .
T Consensus 178 ~li-~~~~-~l~~~~---~----~-------------------------------------------------------- 192 (364)
T TIGR03169 178 TLI-AGAS-LLPGFP---A----K-------------------------------------------------------- 192 (364)
T ss_pred EEE-eCCc-ccccCC---H----H--------------------------------------------------------
Confidence 998 4433 333211 0 0
Q ss_pred cccccccccceeccCCcccccccCCcEEEeecC-ceeEecCcEEEcCCCceecccEEEEecCCCCCcccccccccccccc
Q 009917 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQD 391 (522)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~gv~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~ 391 (522)
+.+.+.+.+++.+|+++.+. +.++++++|++++|++ +++|.||+|+|.+++..+.. .. +
T Consensus 193 -------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~l~~-~g---l-- 252 (364)
T TIGR03169 193 -------------VRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRT-LPADAILWATGARAPPWLAE-SG---L-- 252 (364)
T ss_pred -------------HHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCE-EecCEEEEccCCChhhHHHH-cC---C--
Confidence 00011223445567777765 7788777899999988 99999999999998743221 10 1
Q ss_pred cccCCCCCCcccceeecCCCCCceEEEcccCCc------chhhhHHHHHHHHHHHHcC
Q 009917 392 YLAGSPTEKLPLYREIIHPQIPQLAIIGFSESI------SNLYTSEMRCRWLAELLDG 443 (522)
Q Consensus 392 ~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~------~~~~~~e~qa~~ia~~l~g 443 (522)
..+..+.+.+...+..+++||+|++|.+... -....|..||+.+|+.|..
T Consensus 253 --~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 253 --PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred --CcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 0122233334444444589999999965421 1234578888888876643
No 52
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.92 E-value=4.6e-24 Score=225.69 Aligned_cols=319 Identities=17% Similarity=0.196 Sum_probs=185.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecC-CCccccccc--cccceeecCCccceeecC-------C-----CCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SDIGGAWIK--TVETTMLQTPKQLYQFSD-------Y-----PWPD 67 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~-~~~Gg~w~~--~~~~~~~~~~~~~~~~~~-------~-----~~~~ 67 (522)
++||+|||+|++|+++|..+++.|.+|+|||+. ..+||+|.+ |.|...+...+..+.... + +++.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 479999999999999999999999999999974 469999998 888777544433322110 0 0000
Q ss_pred --C--------C-CCCCCChhHHHHHHHHHHHhcCC--cc-----ceEeeeeEEEEEEcCCCCcccccccccCCCCCCCC
Q 009917 68 --S--------V-TTDFPDHNQVLDYIQSYASHFDL--RK-----HIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (522)
Q Consensus 68 --~--------~-~~~~~~~~~~~~yl~~~~~~~~l--~~-----~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (522)
. . ...-.....+.++.+...+++.- .. .+..+++.+.+.... + .|
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~---------------a-~f- 258 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER---------------G-HI- 258 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE---------------E-EE-
Confidence 0 0 01112445666776666555311 00 011112223333221 0 00
Q ss_pred CCCcEEEEEecCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEE
Q 009917 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVV 209 (522)
Q Consensus 130 ~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVI 209 (522)
.+..+|.+... + +++.||+|||||| +.|.+|+++ +.+. ..++++.+...+ ...+++|+||
T Consensus 259 -~~~~~v~v~~~--g--~~i~ad~lIIATG---S~P~~P~~~---~~~~--~~V~ts~d~~~l-------~~lpk~VvIV 318 (659)
T PTZ00153 259 -VDKNTIKSEKS--G--KEFKVKNIIIATG---STPNIPDNI---EVDQ--KSVFTSDTAVKL-------EGLQNYMGIV 318 (659)
T ss_pred -ecCCeEEEccC--C--EEEECCEEEEcCC---CCCCCCCCC---CCCC--CcEEehHHhhhh-------hhcCCceEEE
Confidence 01123444321 2 4789999999999 567777655 3332 135554333321 2347899999
Q ss_pred cCCCCHHHHHHHHhhhcCCCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHH
Q 009917 210 GLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAI 289 (522)
Q Consensus 210 G~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (522)
|+|.+|+|+|..++..+. +||++.+.+. ++|..+ .- .
T Consensus 319 GgG~iGvE~A~~l~~~G~---eVTLIe~~~~-ll~~~d-------~e--------------------------------i 355 (659)
T PTZ00153 319 GMGIIGLEFMDIYTALGS---EVVSFEYSPQ-LLPLLD-------AD--------------------------------V 355 (659)
T ss_pred CCCHHHHHHHHHHHhCCC---eEEEEeccCc-ccccCC-------HH--------------------------------H
Confidence 999999999999988765 4999999887 555432 00 0
Q ss_pred HHHHHHHHhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecCc----EE--EcC----
Q 009917 290 SKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG----IV--VDG---- 358 (522)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~g----v~--~~d---- 358 (522)
.+...+. .+++.+|+++.+. +.+++++. +. +.+
T Consensus 356 s~~l~~~------------------------------------ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~ 399 (659)
T PTZ00153 356 AKYFERV------------------------------------FLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTG 399 (659)
T ss_pred HHHHHHH------------------------------------HhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccc
Confidence 0000000 0123345555554 55554321 32 221
Q ss_pred ---C--------CceecccEEEEecCCCCCcccccccccccccccccCCCCCCcccceeecCC-----CCCceEEEcccC
Q 009917 359 ---Q--------TTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHP-----QIPQLAIIGFSE 422 (522)
Q Consensus 359 ---G--------~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~-----~~pnl~~iG~~~ 422 (522)
+ ++ +++|.||+|||++|+...+.. +........+.+.+..++... ..||+|++|.+.
T Consensus 400 ~~~~~~~~~~~~~~-i~aD~VlvAtGr~Pnt~~L~l------~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~ 472 (659)
T PTZ00153 400 ESDGPKKNMNDIKE-TYVDSCLVATGRKPNTNNLGL------DKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDAN 472 (659)
T ss_pred cccccccccccceE-EEcCEEEEEECcccCCccCCc------hhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecC
Confidence 1 24 899999999999999764321 100000112323333332222 269999999765
Q ss_pred C-cchhhhHHHHHHHHHHHHcCC
Q 009917 423 S-ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 423 ~-~~~~~~~e~qa~~ia~~l~g~ 444 (522)
+ ....+.+..||+.++..|.|.
T Consensus 473 g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 473 GKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CCccCHHHHHHHHHHHHHHHcCC
Confidence 4 334678999999999999875
No 53
>PRK12831 putative oxidoreductase; Provisional
Probab=99.91 E-value=9.2e-24 Score=217.94 Aligned_cols=169 Identities=24% Similarity=0.367 Sum_probs=116.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+..| .+.+ +.+++..+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip--------------~~~l---------~~~~~~~~ 196 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIP--------------EFRL---------PKETVVKK 196 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCC--------------CccC---------CccHHHHH
Confidence 378999999999999999999999999999999999988754211 1111 12346666
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.++++++ .+++++.|. . .+++.+.. ..+.||+||+|||+.
T Consensus 197 ~~~~~~~~gv--~i~~~~~v~-----~-------------------------~v~~~~~~----~~~~~d~viiAtGa~- 239 (464)
T PRK12831 197 EIENIKKLGV--KIETNVVVG-----K-------------------------TVTIDELL----EEEGFDAVFIGSGAG- 239 (464)
T ss_pred HHHHHHHcCC--EEEcCCEEC-----C-------------------------cCCHHHHH----hccCCCEEEEeCCCC-
Confidence 6777788888 788877551 1 12222210 235699999999963
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCch-------HhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEE
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY-------EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~-------~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v 235 (522)
.|+.|++| |.+. .| ++++.++..... ........+|+|+|||+|.+|+|+|..+...+.+ ||++
T Consensus 240 -~~~~l~ip---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~---Vtlv 310 (464)
T PRK12831 240 -LPKFMGIP---GENL-NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE---VHIV 310 (464)
T ss_pred -CCCCCCCC---CcCC-cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE---EEEE
Confidence 57777788 6542 22 343333321000 0001235789999999999999999999988754 9999
Q ss_pred Ecccc
Q 009917 236 YRTEH 240 (522)
Q Consensus 236 ~r~~~ 240 (522)
.|+..
T Consensus 311 ~r~~~ 315 (464)
T PRK12831 311 YRRSE 315 (464)
T ss_pred eecCc
Confidence 98764
No 54
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.91 E-value=1.7e-23 Score=215.94 Aligned_cols=309 Identities=14% Similarity=0.112 Sum_probs=178.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeec----CCCCCCCCCCCCCCh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFS----DYPWPDSVTTDFPDH 76 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (522)
++||+|||+|++|..+|.. ..|.+|+++|+ +.+||+|.+ |.|...+...+..+... .+-+.. ...-...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~--~~~~~d~ 76 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDA--EIDSVRW 76 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeC--CCCccCH
Confidence 4799999999999998654 46999999998 479999998 88887765444332211 111110 0001233
Q ss_pred hHHHHHHHH-HHHhcCCc-cceEee---eeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEe
Q 009917 77 NQVLDYIQS-YASHFDLR-KHIKFN---RKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQV 151 (522)
Q Consensus 77 ~~~~~yl~~-~~~~~~l~-~~i~~~---~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~ 151 (522)
..+.++... ..+...-. ....+. ..|.-+.-.. .| .+.++|++.++ +++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-----------------~~--~~~~~V~~~~g-----~~~~~ 132 (452)
T TIGR03452 77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHA-----------------RF--VGPRTLRTGDG-----EEITG 132 (452)
T ss_pred HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEE-----------------EE--ecCCEEEECCC-----cEEEe
Confidence 455555443 22221000 001000 1111111110 00 12256777554 46899
Q ss_pred CEEEEeecccCCCCCCCCCCCCCCCCccCce-EEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCC
Q 009917 152 DFVILCVGRFSDVPNIPEFPPKKGPEAFHGK-VIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLEN 230 (522)
Q Consensus 152 d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~-~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~ 230 (522)
|+||+||| +.|..|+++ +.. +. +..+.+... ....+|+|+|||+|.+|+|+|..|+..+.
T Consensus 133 d~lIiATG---s~p~~p~~~---~~~---~~~~~~~~~~~~-------l~~~~k~vvVIGgG~ig~E~A~~l~~~G~--- 193 (452)
T TIGR03452 133 DQIVIAAG---SRPYIPPAI---ADS---GVRYHTNEDIMR-------LPELPESLVIVGGGYIAAEFAHVFSALGT--- 193 (452)
T ss_pred CEEEEEEC---CCCCCCCCC---CCC---CCEEEcHHHHHh-------hhhcCCcEEEECCCHHHHHHHHHHHhCCC---
Confidence 99999999 457777533 211 21 222222211 11247999999999999999999998765
Q ss_pred ceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCC
Q 009917 231 PCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVP 310 (522)
Q Consensus 231 ~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 310 (522)
+||++.+.+. ++|... .-+ ...+.
T Consensus 194 ~Vtli~~~~~-ll~~~d-------~~~--------------------------------~~~l~---------------- 217 (452)
T TIGR03452 194 RVTIVNRSTK-LLRHLD-------EDI--------------------------------SDRFT---------------- 217 (452)
T ss_pred cEEEEEccCc-cccccC-------HHH--------------------------------HHHHH----------------
Confidence 4999999876 344321 000 00000
Q ss_pred CCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--Cc--EEEcCCCceecccEEEEecCCCCCcccccccc
Q 009917 311 KHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKGDVKLKNIFL 385 (522)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~g--v~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~ 385 (522)
+.++. +|+++.+. +.++.. ++ +.+.+|++ +++|.||+|+|++|+..++..-.
T Consensus 218 ---------------------~~~~~-gI~i~~~~~V~~i~~~~~~v~v~~~~g~~-i~~D~vl~a~G~~pn~~~l~~~~ 274 (452)
T TIGR03452 218 ---------------------EIAKK-KWDIRLGRNVTAVEQDGDGVTLTLDDGST-VTADVLLVATGRVPNGDLLDAEA 274 (452)
T ss_pred ---------------------HHHhc-CCEEEeCCEEEEEEEcCCeEEEEEcCCCE-EEcCEEEEeeccCcCCCCcCchh
Confidence 01111 24555443 555542 23 45567877 99999999999999976533100
Q ss_pred cccccccccCCCCCCcccceeecCCCCCceEEEcccCCc-chhhhHHHHHHHHHHHHcCC
Q 009917 386 SQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-SNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 386 ~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~ 444 (522)
. .+ .-++.+.+..... +.++.||+|++|.+... ...+.+..|++.++..+.+.
T Consensus 275 ~-gl----~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 275 A-GV----EVDEDGRIKVDEY-GRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred c-Ce----eECCCCcEeeCCC-cccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 0 00 0012233333333 34789999999976543 34567999999999998764
No 55
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.91 E-value=1.4e-23 Score=216.31 Aligned_cols=166 Identities=27% Similarity=0.358 Sum_probs=113.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+..|. +....++.+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~------------------------~~~~~~~~~~ 188 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPE------------------------FRLPKEIVVT 188 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCC------------------------ccCCHHHHHH
Confidence 4789999999999999999999999999999999899876531111 1111355555
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+..+++++ .+++++.| . ..|++.+. ...||+||+|||+.
T Consensus 189 ~~~~l~~~gv--~~~~~~~v------~------------------------~~v~~~~~------~~~yd~viiAtGa~- 229 (449)
T TIGR01316 189 EIKTLKKLGV--TFRMNFLV------G------------------------KTATLEEL------FSQYDAVFIGTGAG- 229 (449)
T ss_pred HHHHHHhCCc--EEEeCCcc------C------------------------CcCCHHHH------HhhCCEEEEeCCCC-
Confidence 5555666777 66666533 1 12333322 24699999999963
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchH--------hhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEE
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE--------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~--------~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~ 234 (522)
.|+.|.+| |.+. .| ++++.++...... .......||+|+|||+|.+|+|+|..++..+.+ ||+
T Consensus 230 -~p~~~~ip---G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~---Vtl 300 (449)
T TIGR01316 230 -LPKLMNIP---GEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE---VHC 300 (449)
T ss_pred -CCCcCCCC---CCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE---EEE
Confidence 57888888 6542 22 4444433210000 001135789999999999999999999988754 999
Q ss_pred EEcccc
Q 009917 235 LYRTEH 240 (522)
Q Consensus 235 v~r~~~ 240 (522)
+.|++.
T Consensus 301 v~~~~~ 306 (449)
T TIGR01316 301 LYRRTR 306 (449)
T ss_pred EeecCc
Confidence 998764
No 56
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.91 E-value=3.9e-23 Score=214.12 Aligned_cols=170 Identities=26% Similarity=0.409 Sum_probs=116.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+..|. +....++..+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~------------------------~~~~~~~~~~ 195 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPE------------------------FRLPKDIVDR 195 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCC------------------------ccCCHHHHHH
Confidence 3789999999999999999999999999999999998875431111 1112466677
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.++++++ .+++++.|.. .+++.+. .+.||+||+|||+.
T Consensus 196 ~~~~l~~~gv--~~~~~~~v~~------------------------------~v~~~~~------~~~~d~vvlAtGa~- 236 (457)
T PRK11749 196 EVERLLKLGV--EIRTNTEVGR------------------------------DITLDEL------RAGYDAVFIGTGAG- 236 (457)
T ss_pred HHHHHHHcCC--EEEeCCEECC------------------------------ccCHHHH------HhhCCEEEEccCCC-
Confidence 7777777887 6777765411 1222221 26799999999964
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHh--hhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA--AANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~--~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.|+.+.+| |.+. .| +++..++....... ......+++|+|||+|.+|+|+|..++..+. ++|+++.|++.
T Consensus 237 -~~~~~~i~---G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~--~~Vtlv~~~~~ 308 (457)
T PRK11749 237 -LPRFLGIP---GENL-GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGA--ESVTIVYRRGR 308 (457)
T ss_pred -CCCCCCCC---CccC-CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCC--CeEEEeeecCc
Confidence 46666677 6542 22 45544432211000 0112368999999999999999999988764 35999998765
Q ss_pred eee
Q 009917 241 WNI 243 (522)
Q Consensus 241 ~~~ 243 (522)
..+
T Consensus 309 ~~~ 311 (457)
T PRK11749 309 EEM 311 (457)
T ss_pred ccC
Confidence 333
No 57
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.90 E-value=1.3e-22 Score=220.87 Aligned_cols=300 Identities=19% Similarity=0.205 Sum_probs=171.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||||||+||..|++.|++|+|||+.+.+||...+.+|..+ .+ .+..++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~r-----------------------lp-~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFR-----------------------IS-AESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccC-----------------------CC-HHHHHH
Confidence 368999999999999999999999999999999999987654322211 01 244455
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.+..+++ .+++++.. . +++.+. ....||+||+|||+.
T Consensus 593 ~ie~l~~~GV--e~~~g~~~------d--------------------------~~ve~l-----~~~gYDaVIIATGA~- 632 (1012)
T TIGR03315 593 DIELVKFHGV--EFKYGCSP------D--------------------------LTVAEL-----KNQGYKYVILAIGAW- 632 (1012)
T ss_pred HHHHHHhcCc--EEEEeccc------c--------------------------eEhhhh-----hcccccEEEECCCCC-
Confidence 4555566676 66665310 0 111121 245699999999975
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccccee
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~ 242 (522)
.++.+.+| |... .++.+.++.............||+|+|||+|.+|+|+|..+.+..+. ++|+++.|+..-.
T Consensus 633 -~~~~l~I~---G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga-~kVtLVyRr~~~~ 704 (1012)
T TIGR03315 633 -KHGPLRLE---GGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGV-EKVTVVYRRTKRY 704 (1012)
T ss_pred -CCCCCCcC---CCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCC-ceEEEEEccCccc
Confidence 34555566 5321 23333332210000001235699999999999999999988775221 4699999876423
Q ss_pred ecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccccc
Q 009917 243 IPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCL 322 (522)
Q Consensus 243 ~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 322 (522)
+|... +.... .+.. ++ .
T Consensus 705 Mpa~~---------------------------------------eEl~~----alee-------GV-------------e 721 (1012)
T TIGR03315 705 MPASR---------------------------------------EELEE----ALED-------GV-------------D 721 (1012)
T ss_pred cccCH---------------------------------------HHHHH----HHHc-------CC-------------E
Confidence 33221 00000 0000 00 0
Q ss_pred eeccCCcccccccCCcEEEeecCceeEecCc--EEEcCCCc-eecccEEEEecCCCCCcccccccccccccccccCCCCC
Q 009917 323 TITVPEKFYDKVEEGSIILKKSQDFSFCEDG--IVVDGQTT-PLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTE 399 (522)
Q Consensus 323 ~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~g--v~~~dG~~-~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~~~~~~ 399 (522)
... ..-...+..+++++....+...+.++ ....+|+. .+++|.||+|+|++++..+++....+ . +..+
T Consensus 722 ~~~--~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~------l-d~~G 792 (1012)
T TIGR03315 722 FKE--LLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIP------L-DEYG 792 (1012)
T ss_pred EEe--CCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcc------c-CCCC
Confidence 000 00001122334433211111111122 22234442 38999999999999987654322110 0 1222
Q ss_pred CcccceeecCCCCCceEEEcccC-CcchhhhHHHHHHHHHHHHcCCCC
Q 009917 400 KLPLYREIIHPQIPQLAIIGFSE-SISNLYTSEMRCRWLAELLDGAVK 446 (522)
Q Consensus 400 ~~~ly~~~~~~~~pnl~~iG~~~-~~~~~~~~e~qa~~ia~~l~g~~~ 446 (522)
.+........++.||+|++|... ++..+..|..|++.+|..+.++..
T Consensus 793 ~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 793 WPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 23333333567889999999765 455677899999999999876544
No 58
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.6e-22 Score=187.69 Aligned_cols=316 Identities=21% Similarity=0.256 Sum_probs=197.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCcccee----ecCCCCCCCCCCCCCCh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQ----FSDYPWPDSVTTDFPDH 76 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (522)
.+|..|||||.+|+++|+..++.|.++.++|..-.+||+|.. |.|...+-..+.+-. -.++.|+......| ..
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f-dW 98 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF-DW 98 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC-cH
Confidence 378999999999999999999999999999997799999998 777655533322111 11233332111222 23
Q ss_pred hHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEE
Q 009917 77 NQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (522)
Q Consensus 77 ~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lv 155 (522)
..+.+--..|..++ +++++..-+..|.-++-.. .|..++.-.|...++ ....+++++++
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a-----------------~f~~~~~v~V~~~d~---~~~~Ytak~iL 158 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA-----------------RFVSPGEVEVEVNDG---TKIVYTAKHIL 158 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeE-----------------EEcCCCceEEEecCC---eeEEEecceEE
Confidence 34444334444443 2333444445555554322 122234455665554 33568999999
Q ss_pred EeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEE
Q 009917 156 LCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (522)
Q Consensus 156 vAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v 235 (522)
|||| +.|.+|+|| |.+. -+.|..+.++ ...+||++|||+|+.|+|+|.-++..+.. ++++
T Consensus 159 IAtG---g~p~~PnIp---G~E~----gidSDgff~L-------ee~Pkr~vvvGaGYIavE~Agi~~gLgse---thlf 218 (478)
T KOG0405|consen 159 IATG---GRPIIPNIP---GAEL----GIDSDGFFDL-------EEQPKRVVVVGAGYIAVEFAGIFAGLGSE---THLF 218 (478)
T ss_pred EEeC---CccCCCCCC---chhh----ccccccccch-------hhcCceEEEEccceEEEEhhhHHhhcCCe---eEEE
Confidence 9999 678888888 7652 3455555553 35789999999999999999999998875 9999
Q ss_pred EcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCccc
Q 009917 236 YRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFL 315 (522)
Q Consensus 236 ~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 315 (522)
.|... ++..++ ..
T Consensus 219 iR~~k-vLR~FD-------~~----------------------------------------------------------- 231 (478)
T KOG0405|consen 219 IRQEK-VLRGFD-------EM----------------------------------------------------------- 231 (478)
T ss_pred Eecch-hhcchh-------HH-----------------------------------------------------------
Confidence 99775 333322 11
Q ss_pred ccccccceeccCCcccccccCCcEEEeecC-ceeEec--Cc---EEEcCCCceecccEEEEecCCCCCcccccccccccc
Q 009917 316 QELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG---IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTF 389 (522)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~g---v~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l 389 (522)
+++...+.+...+|.+++.. +..+.. ++ +..+.|+. ..+|.++||||.+|+..-+. |
T Consensus 232 ----------i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i-~~vd~llwAiGR~Pntk~L~------l 294 (478)
T KOG0405|consen 232 ----------ISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTI-EDVDTLLWAIGRKPNTKGLN------L 294 (478)
T ss_pred ----------HHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecccc-ccccEEEEEecCCCCccccc------c
Confidence 11111223334446666554 444432 22 44456665 67999999999999864322 2
Q ss_pred cccccCCCCCCcccceeecCCCCCceEEEcccCCc-chhhhHHHHHHHHHHHHcC
Q 009917 390 QDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESI-SNLYTSEMRCRWLAELLDG 443 (522)
Q Consensus 390 ~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~-~~~~~~e~qa~~ia~~l~g 443 (522)
++.....+............++.|+|+.+|...+- ...+++-+.+|-+|.-|-|
T Consensus 295 e~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 295 ENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred hhcceeeCCCCCEEEeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 22222222222333444567789999999976543 3456777778888776644
No 59
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.90 E-value=1.4e-22 Score=223.16 Aligned_cols=167 Identities=29% Similarity=0.362 Sum_probs=118.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||||||+||..|++.|++|+|||+.+.+||...+-.|. |--..++.+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~------------------------~rlp~~vi~~ 361 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPE------------------------FRLPNQLIDD 361 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCC------------------------CcChHHHHHH
Confidence 3799999999999999999999999999999999999986652222 1122456666
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.++.+|+ .++.|+.|- ..+++.+. ....||+||+|||+.
T Consensus 362 ~i~~l~~~Gv--~f~~n~~vG------------------------------~dit~~~l-----~~~~yDAV~LAtGA~- 403 (944)
T PRK12779 362 VVEKIKLLGG--RFVKNFVVG------------------------------KTATLEDL-----KAAGFWKIFVGTGAG- 403 (944)
T ss_pred HHHHHHhhcC--eEEEeEEec------------------------------cEEeHHHh-----ccccCCEEEEeCCCC-
Confidence 6667777887 777776541 12444443 345799999999974
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHh---------hhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceE
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA---------AANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~---------~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt 233 (522)
.|+.+++| |.+. .| ++...+|....... ......||+|+|||+|.+|+|+|..+.+.+.+ ||
T Consensus 404 -~pr~l~Ip---G~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~---Vt 474 (944)
T PRK12779 404 -LPTFMNVP---GEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN---VT 474 (944)
T ss_pred -CCCcCCCC---CCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE---EE
Confidence 57888888 6442 33 33333332110000 00124789999999999999999999988753 99
Q ss_pred EEEcccc
Q 009917 234 VLYRTEH 240 (522)
Q Consensus 234 ~v~r~~~ 240 (522)
++.|++.
T Consensus 475 lv~rr~~ 481 (944)
T PRK12779 475 IVYRRTK 481 (944)
T ss_pred EEEecCc
Confidence 9998754
No 60
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=5.3e-22 Score=189.48 Aligned_cols=201 Identities=23% Similarity=0.317 Sum_probs=145.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcC-CceEEEecCCCccccccc--cccceeecCC-----------ccceeecCCCCCC
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK--TVETTMLQTP-----------KQLYQFSDYPWPD 67 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g-~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~-----------~~~~~~~~~~~~~ 67 (522)
...|++.||.||+.|+.|..|.+.+ .+.+.+||.+.+ .|.. ..|+..+++| ...|+|-.+-...
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 3589999999999999999999965 789999998876 4776 6777777764 3444443321111
Q ss_pred C-------CCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEE--EEE
Q 009917 68 S-------VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT--VAV 138 (522)
Q Consensus 68 ~-------~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~ 138 (522)
+ ....++++.|+.+|+++.+.++. .++|+++|+.|.... . +.... +.+
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~---~~rfg~~V~~i~~~~-~-------------------d~~~~~~~~t 138 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQLP---SLRFGEEVTDISSLD-G-------------------DAVVRLFVVT 138 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhCC---ccccCCeeccccccC-C-------------------cceeEEEEEc
Confidence 1 14667899999999999999983 799999999774332 0 12223 222
Q ss_pred ecCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccC-ceEEeeccCCCCchHhhhhccCCCE-EEEEcCCCCHH
Q 009917 139 EDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFH-GKVIHSMDYSDMDYEAAANLVKGKR-VTVVGLQKSAL 216 (522)
Q Consensus 139 ~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~-g~~~hs~~~~~~~~~~~~~~~~gk~-VvVIG~G~sg~ 216 (522)
.++ ..++|+.|||++| ..|.+|+. ...+. ++++||++|.... .+..+|+ |+|||+|.||.
T Consensus 139 ~~~-----~~y~ar~lVlg~G---~~P~IP~~-----f~~l~~~~vfHss~~~~~~-----~~~~~~~~V~ViG~GQSAA 200 (436)
T COG3486 139 ANG-----TVYRARNLVLGVG---TQPYIPPC-----FRSLIGERVFHSSEYLERH-----PELLQKRSVTVIGSGQSAA 200 (436)
T ss_pred CCC-----cEEEeeeEEEccC---CCcCCChH-----HhCcCccceeehHHHHHhh-----HHhhcCceEEEEcCCccHH
Confidence 332 4899999999999 67899952 22233 3799999998643 3355555 99999999999
Q ss_pred HHHHHHhhhcCC-CCceEEEEcccceeecCC
Q 009917 217 DIAMECTTANGL-ENPCTVLYRTEHWNIPDY 246 (522)
Q Consensus 217 dia~~l~~~~~~-~~~Vt~v~r~~~~~~p~~ 246 (522)
|+...|...... ..++.|+.|++. +.|..
T Consensus 201 Ei~~~Ll~~~~~~~~~l~witR~~g-f~p~d 230 (436)
T COG3486 201 EIFLDLLNSQPPQDYQLNWITRSSG-FLPMD 230 (436)
T ss_pred HHHHHHHhCCCCcCccceeeeccCC-CCccc
Confidence 999999875432 234889999988 44543
No 61
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.89 E-value=3.1e-22 Score=219.04 Aligned_cols=168 Identities=26% Similarity=0.427 Sum_probs=114.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||+|||++|..|++.|++|+|||+.+.+||.+.+..|. +.+| .++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~--------------~rlp----------~~~~~~ 486 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPE--------------FRLP----------KKIVDV 486 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCC--------------CCCC----------HHHHHH
Confidence 3689999999999999999999999999999998899876542121 1111 234555
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.++++++ .+++++.| + ..|++.+. ....||+||+|||+.
T Consensus 487 ~~~~l~~~gv--~~~~~~~v------~------------------------~~v~~~~l-----~~~~ydavvlAtGa~- 528 (752)
T PRK12778 487 EIENLKKLGV--KFETDVIV------G------------------------KTITIEEL-----EEEGFKGIFIASGAG- 528 (752)
T ss_pred HHHHHHHCCC--EEECCCEE------C------------------------CcCCHHHH-----hhcCCCEEEEeCCCC-
Confidence 5555667777 67776543 1 11333332 345699999999963
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchH-------hhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEE
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE-------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~-------~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v 235 (522)
.|+.|.+| |.+. .| ++++.+|...... .......||+|+|||+|.+|+|+|..+...+. ++||++
T Consensus 529 -~~~~l~ip---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga--~~Vtlv 600 (752)
T PRK12778 529 -LPNFMNIP---GENS-NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGA--ERVTIV 600 (752)
T ss_pred -CCCCCCCC---CCCC-CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Confidence 47777788 6542 22 4444433211000 00113578999999999999999999988764 359999
Q ss_pred Ecccc
Q 009917 236 YRTEH 240 (522)
Q Consensus 236 ~r~~~ 240 (522)
.|++.
T Consensus 601 ~r~~~ 605 (752)
T PRK12778 601 YRRSE 605 (752)
T ss_pred eecCc
Confidence 98764
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.89 E-value=5.2e-22 Score=212.94 Aligned_cols=170 Identities=30% Similarity=0.451 Sum_probs=113.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+..|. |....++.++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~------------------------~~~~~~~~~~ 248 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPR------------------------FRLPESVIDA 248 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCC------------------------CCCCHHHHHH
Confidence 3689999999999999999999999999999999999987642111 1111345555
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.+.++++ .+++++.+ .+ .+++.+. ...||+||+|||+.
T Consensus 249 ~~~~l~~~Gv--~i~~~~~v-~~-----------------------------dv~~~~~------~~~~DaVilAtGa~- 289 (652)
T PRK12814 249 DIAPLRAMGA--EFRFNTVF-GR-----------------------------DITLEEL------QKEFDAVLLAVGAQ- 289 (652)
T ss_pred HHHHHHHcCC--EEEeCCcc-cC-----------------------------ccCHHHH------HhhcCEEEEEcCCC-
Confidence 5566677777 67776543 11 0111121 23599999999964
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccccee
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWN 242 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~ 242 (522)
.++.+.+| |.+. .| +++..++..... .......||+|+|||+|.+|+|+|..+...+. ++||++.|++...
T Consensus 290 -~~~~~~ip---G~~~-~g-v~~~~~~l~~~~-~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga--~~Vtlv~r~~~~~ 360 (652)
T PRK12814 290 -KASKMGIP---GEEL-PG-VISGIDFLRNVA-LGTALHPGKKVVVIGGGNTAIDAARTALRLGA--ESVTILYRRTREE 360 (652)
T ss_pred -CCCCCCCC---CcCc-CC-cEeHHHHHHHhh-cCCcccCCCeEEEECCCHHHHHHHHHHHHcCC--CeEEEeeecCccc
Confidence 34556677 6442 23 333333321000 00124679999999999999999999888764 3699999876433
Q ss_pred ec
Q 009917 243 IP 244 (522)
Q Consensus 243 ~p 244 (522)
+|
T Consensus 361 mp 362 (652)
T PRK12814 361 MP 362 (652)
T ss_pred CC
Confidence 33
No 63
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.88 E-value=3.7e-21 Score=192.70 Aligned_cols=180 Identities=23% Similarity=0.321 Sum_probs=112.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||||++|+++|..|++.|.+|++||+.+.+||.+...++. . ..+.+.+...+
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~----------------------~-~~~~~~~~~~~ 75 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPE----------------------F-RIPIERVREGV 75 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcc----------------------c-ccCHHHHHHHH
Confidence 689999999999999999999999999999999988765431110 0 01234455555
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
+.+.++ ++ .+++++.|..++.... + ..+.+....... +...+.||+||+|||+.
T Consensus 76 ~~l~~~-~i--~~~~~~~v~~~~~~~~-~-----------------~~~~~~~~~~~~---~~~~~~~d~lviAtGs~-- 129 (352)
T PRK12770 76 KELEEA-GV--VFHTRTKVCCGEPLHE-E-----------------EGDEFVERIVSL---EELVKKYDAVLIATGTW-- 129 (352)
T ss_pred HHHHhC-Ce--EEecCcEEeecccccc-c-----------------cccccccccCCH---HHHHhhCCEEEEEeCCC--
Confidence 655544 76 6777877765543100 0 011122211111 11246899999999963
Q ss_pred CCCCCCCCCCCCCCccCceEEeeccC---------CCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEE
Q 009917 164 VPNIPEFPPKKGPEAFHGKVIHSMDY---------SDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~f~g~~~hs~~~---------~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~ 234 (522)
.|..|++| |.+. .+ ++++.++ .... .......++++|+|||+|.+|+|+|..|+..+. ++|++
T Consensus 130 ~~~~~~ip---g~~~-~~-v~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~--~~Vtv 201 (352)
T PRK12770 130 KSRKLGIP---GEDL-PG-VYSALEYLFRIRAAKLGYLP-WEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGA--EKVYL 201 (352)
T ss_pred CCCcCCCC---Cccc-cC-ceeHHHHHHHhhhccccccc-cccccccCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEE
Confidence 46777787 6442 11 2222111 0000 000012458999999999999999999987653 24999
Q ss_pred EEcccc
Q 009917 235 LYRTEH 240 (522)
Q Consensus 235 v~r~~~ 240 (522)
+.|++.
T Consensus 202 i~~~~~ 207 (352)
T PRK12770 202 AYRRTI 207 (352)
T ss_pred Eeecch
Confidence 998654
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.87 E-value=4.2e-21 Score=213.35 Aligned_cols=168 Identities=24% Similarity=0.317 Sum_probs=113.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||||||||++|..|++.|++|+|||+.+.+||...+..| .|....++.+..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip------------------------~~rl~~e~~~~~ 486 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIP------------------------SFRLPRDIIDRE 486 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCC------------------------ccCCCHHHHHHH
Confidence 68999999999999999999999999999999999876443111 111224566666
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..+++|+ .+++++.| .. .+++.+.. ....||+||+|||+.
T Consensus 487 ~~~l~~~Gv--~~~~~~~v-g~-----------------------------~~~~~~l~----~~~~yDaViIATGa~-- 528 (1006)
T PRK12775 487 VQRLVDIGV--KIETNKVI-GK-----------------------------TFTVPQLM----NDKGFDAVFLGVGAG-- 528 (1006)
T ss_pred HHHHHHCCC--EEEeCCcc-CC-----------------------------ccCHHHHh----hccCCCEEEEecCCC--
Confidence 667777888 77777543 10 02221210 124699999999973
Q ss_pred CCCCCCCCCCCCCCccCceEEeeccCCCCchH--------hhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEE
Q 009917 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE--------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~--------~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v 235 (522)
.|+.|++| |.+. . .+++..+|...... .......||+|+|||+|.+|+|+|..+...+. +.|+++
T Consensus 529 ~pr~l~Ip---G~~l-~-gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa--~~Vtiv 601 (1006)
T PRK12775 529 APTFLGIP---GEFA-G-QVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGA--PTVRCV 601 (1006)
T ss_pred CCCCCCCC---CcCC-C-CcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCC--CEEEEE
Confidence 47778888 6432 2 24554433211000 00123579999999999999999988888764 358988
Q ss_pred Ecccc
Q 009917 236 YRTEH 240 (522)
Q Consensus 236 ~r~~~ 240 (522)
.|+..
T Consensus 602 ~rr~~ 606 (1006)
T PRK12775 602 YRRSE 606 (1006)
T ss_pred eecCc
Confidence 87654
No 65
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.87 E-value=3.1e-21 Score=184.50 Aligned_cols=308 Identities=17% Similarity=0.165 Sum_probs=188.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHH
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (522)
.+++|||+|+|++|.+.++.|...-++|+|++.++.+ -+-|.-+...-.-.....+.+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF----------------------lFTPLLpS~~vGTve~rSIvE 111 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF----------------------LFTPLLPSTTVGTVELRSIVE 111 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccce----------------------EEeeccCCccccceeehhhhh
Confidence 3689999999999999999999988999999987653 222222111112223355666
Q ss_pred HHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEec--CCC-CceeEEEeCEEEEee
Q 009917 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED--AKN-HSTEVHQVDFVILCV 158 (522)
Q Consensus 82 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-g~~~~~~~d~lvvAt 158 (522)
-++..+.+... ..-.+..+...++.+. ..|+++. .++ ..+..+.||+||+|+
T Consensus 112 PIr~i~r~k~~-~~~y~eAec~~iDp~~------------------------k~V~~~s~t~~~~~~e~~i~YDyLViA~ 166 (491)
T KOG2495|consen 112 PIRAIARKKNG-EVKYLEAECTKIDPDN------------------------KKVHCRSLTADSSDKEFVIGYDYLVIAV 166 (491)
T ss_pred hHHHHhhccCC-CceEEecccEeecccc------------------------cEEEEeeeccCCCcceeeecccEEEEec
Confidence 66666666543 1233455667776654 3454443 221 455789999999999
Q ss_pred cccCCCCCCCCCCCCCCCCc---cCceEEeeccCCCCchH----------hhhhccCCCEEEEEcCCCCHHHHHHHHhhh
Q 009917 159 GRFSDVPNIPEFPPKKGPEA---FHGKVIHSMDYSDMDYE----------AAANLVKGKRVTVVGLQKSALDIAMECTTA 225 (522)
Q Consensus 159 G~~s~~p~~P~~p~~~g~~~---f~g~~~hs~~~~~~~~~----------~~~~~~~gk~VvVIG~G~sg~dia~~l~~~ 225 (522)
|+ .++.+.+| |..+ |-.++-|..+.+...-+ ..++..+=-++||||||++|+|.|.+|++.
T Consensus 167 GA---~~~TFgip---GV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Df 240 (491)
T KOG2495|consen 167 GA---EPNTFGIP---GVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADF 240 (491)
T ss_pred cC---CCCCCCCC---chhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHH
Confidence 95 46666666 5543 33333333332110000 001122234799999999999999999964
Q ss_pred cCC-----------CCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHH
Q 009917 226 NGL-----------ENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVE 294 (522)
Q Consensus 226 ~~~-----------~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (522)
-.+ .-+||++...|+ +++.++ +.+.
T Consensus 241 i~~Dl~k~yp~l~~~i~vtLiEA~d~-iL~mFd-------------------------------------------krl~ 276 (491)
T KOG2495|consen 241 IPEDLRKIYPELKKDIKVTLIEAADH-ILNMFD-------------------------------------------KRLV 276 (491)
T ss_pred HHHHHHHhhhcchhheEEEeeccchh-HHHHHH-------------------------------------------HHHH
Confidence 211 123566655444 333221 1111
Q ss_pred HHHhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecCcEEEcCC----CceecccEEE
Q 009917 295 ADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDGIVVDGQ----TTPLKTDLVI 369 (522)
Q Consensus 295 ~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~gv~~~dG----~~~~~~D~VI 369 (522)
.+. .+.+.+.+|++..+. +..+++..|+...+ ++ +++-.+|
T Consensus 277 ~ya---------------------------------e~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~-iPYG~lV 322 (491)
T KOG2495|consen 277 EYA---------------------------------ENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEE-IPYGLLV 322 (491)
T ss_pred HHH---------------------------------HHHhhhccceeecccEEEeecCcEEEEEcCCCceee-ecceEEE
Confidence 111 123556678888875 77888888777654 45 8999999
Q ss_pred EecCCCCCcccccccccccccccccCCCCCCcccceeecCCCCCceEEEcccCC----cchhhhHHHHHHHHHHHHcCCC
Q 009917 370 LATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSES----ISNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 370 ~aTG~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~----~~~~~~~e~qa~~ia~~l~g~~ 445 (522)
||||-.+..-..+++ .. +.....++.....-+..++.+|+|+||.+.. ..+.++|++|+.|+|+.+.-..
T Consensus 323 WatG~~~rp~~k~lm-----~~-i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~ 396 (491)
T KOG2495|consen 323 WATGNGPRPVIKDLM-----KQ-IDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMG 396 (491)
T ss_pred ecCCCCCchhhhhHh-----hc-CCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHh
Confidence 999999864322211 11 1111122344566677889999999997652 2245689999999999986443
Q ss_pred C
Q 009917 446 K 446 (522)
Q Consensus 446 ~ 446 (522)
+
T Consensus 397 k 397 (491)
T KOG2495|consen 397 K 397 (491)
T ss_pred c
Confidence 3
No 66
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.86 E-value=4e-21 Score=180.63 Aligned_cols=320 Identities=16% Similarity=0.184 Sum_probs=189.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccceeecCCccceeecCC-CCCCC---CCCCCCCh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQFSDY-PWPDS---VTTDFPDH 76 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 76 (522)
.+||+|||+||+|..||.+..+.|++.+|+|++..+||+|.. +.|+..+-..+++|..... .+... ..+.-...
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 379999999999999999999999999999999999999999 8898887776666643321 11000 01111123
Q ss_pred hHHHHHHHHHHHhcC--CccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEE
Q 009917 77 NQVLDYIQSYASHFD--LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (522)
Q Consensus 77 ~~~~~yl~~~~~~~~--l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~l 154 (522)
+.+.......++++. + ++..-..+|+-+.-.+ .|.+. -+|.+...+ |+...+.++.+
T Consensus 119 ~~~~~~k~~~vk~Lt~gi-~~lfkknkV~~~kG~g-----------------sf~~p--~~V~v~k~d-g~~~ii~aKnI 177 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGI-ENLFKKNKVTYVKGFG-----------------SFLDP--NKVSVKKID-GEDQIIKAKNI 177 (506)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHhhhcCeEEEeeeE-----------------eecCC--ceEEEeccC-CCceEEeeeeE
Confidence 344444333333331 1 0111112344333221 01111 235444332 56688999999
Q ss_pred EEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEE
Q 009917 155 ILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (522)
Q Consensus 155 vvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~ 234 (522)
|+|||+- ++.+| |++--...++.|..-..+ ..-+|+.+|||+|..|+|+..-..+.+.+ ||+
T Consensus 178 iiATGSe-----V~~~P---GI~IDekkIVSStgALsL-------~~vPk~~~viG~G~IGLE~gsV~~rLGse---VT~ 239 (506)
T KOG1335|consen 178 IIATGSE-----VTPFP---GITIDEKKIVSSTGALSL-------KEVPKKLTVIGAGYIGLEMGSVWSRLGSE---VTV 239 (506)
T ss_pred EEEeCCc-----cCCCC---CeEecCceEEecCCccch-------hhCcceEEEEcCceeeeehhhHHHhcCCe---EEE
Confidence 9999953 33455 544322344544443332 35689999999999999999999999876 999
Q ss_pred EEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcc
Q 009917 235 LYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSF 314 (522)
Q Consensus 235 v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 314 (522)
+.--+. +.+..+ . .+++...+.
T Consensus 240 VEf~~~-i~~~mD-------~--------------------------------Eisk~~qr~------------------ 261 (506)
T KOG1335|consen 240 VEFLDQ-IGGVMD-------G--------------------------------EISKAFQRV------------------ 261 (506)
T ss_pred EEehhh-hccccC-------H--------------------------------HHHHHHHHH------------------
Confidence 986554 333322 1 111222222
Q ss_pred cccccccceeccCCcccccccCCcEEEeecC-ceeEec--C-c--EEEc---CCC-ceecccEEEEecCCCCCccccccc
Q 009917 315 LQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--D-G--IVVD---GQT-TPLKTDLVILATGFKGDVKLKNIF 384 (522)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~-g--v~~~---dG~-~~~~~D~VI~aTG~~~~~~l~~~~ 384 (522)
|...+++++.++ +...+. + . |.+. +|+ +.++||+++.|+|.+|-..-+.
T Consensus 262 -------------------L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLg-- 320 (506)
T KOG1335|consen 262 -------------------LQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLG-- 320 (506)
T ss_pred -------------------HHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCC--
Confidence 222233333332 323222 1 1 2222 222 2389999999999998533211
Q ss_pred ccccccccccC-CCCCCcccceeecCCCCCceEEEcccCC-cchhhhHHHHHHHHHHHHcCCC
Q 009917 385 LSQTFQDYLAG-SPTEKLPLYREIIHPQIPQLAIIGFSES-ISNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 385 ~~~~l~~~~~~-~~~~~~~ly~~~~~~~~pnl~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~~ 445 (522)
+++..+. +..+++ ....-+.+.+||||.||.... +...+-+|.|+..+...++|..
T Consensus 321 ----le~iGi~~D~r~rv-~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~ 378 (506)
T KOG1335|consen 321 ----LEKIGIELDKRGRV-IVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH 378 (506)
T ss_pred ----hhhcccccccccce-eccccccccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence 2222221 222222 233446678999999997654 4456789999999999998763
No 67
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.86 E-value=9.5e-20 Score=179.19 Aligned_cols=384 Identities=17% Similarity=0.203 Sum_probs=219.8
Q ss_pred CcEEEECCChhHHHHHHHHHhc---CCceEEEecCCCccccccc--cccceeecCCccceee--cCCC---------C--
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIK--TVETTMLQTPKQLYQF--SDYP---------W-- 65 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~---g~~v~i~e~~~~~Gg~w~~--~~~~~~~~~~~~~~~~--~~~~---------~-- 65 (522)
++|+|||+|++|+++|.+|++. ...+.|||+.+.+|+.-.+ .-|...+|+|+..|+. ++.| .
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 6899999999999999999984 2239999999999887666 5667788888776653 3311 0
Q ss_pred ----CC---CCCCCCCChhHHHHHHHHHHHhcCCccc---eE-eeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcE
Q 009917 66 ----PD---SVTTDFPDHNQVLDYIQSYASHFDLRKH---IK-FNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (522)
Q Consensus 66 ----~~---~~~~~~~~~~~~~~yl~~~~~~~~l~~~---i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (522)
++ .+...|+++..+.+|+.+..+.+-.... ++ ..++++++.+.+ ..+.|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~--------------------n~~~~ 141 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT--------------------NAGGY 141 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc--------------------CCceE
Confidence 00 1257789999999998887665522111 33 355677776653 12568
Q ss_pred EEEEecCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceE-EeeccCCCCchHhhhhccCCCEEEEEcCCC
Q 009917 135 TVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKV-IHSMDYSDMDYEAAANLVKGKRVTVVGLQK 213 (522)
Q Consensus 135 ~v~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~-~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~ 213 (522)
.++..++ ....||.+|+|||+. .|..+. -..+|+|.. +++..|.... ......+.+|+|+|+|.
T Consensus 142 ~~~~~~g-----~~~~ad~~Vlatgh~--~~~~~~-----~~~~~~~~~~~ia~~~~~~~---ld~v~~~drVli~GsgL 206 (474)
T COG4529 142 LVTTADG-----PSEIADIIVLATGHS--APPADP-----AARDLKGSPRLIADPYPANA---LDGVDADDRVLIVGSGL 206 (474)
T ss_pred EEecCCC-----CeeeeeEEEEeccCC--CCCcch-----hhhccCCCcceeccccCCcc---cccccCCCceEEecCCc
Confidence 8888887 578999999999974 233322 112333322 3444443211 12345667799999999
Q ss_pred CHHHHHHHHhhhcCCCCceEEEEcccceeecCCCCCC--CchhhHHH----------HHHHHHhhcC--------CChhH
Q 009917 214 SALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWG--FPLAYLYL----------NRFAELLVHK--------PGEGF 273 (522)
Q Consensus 214 sg~dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g--~p~~~~~~----------~r~~~~~~~~--------~~~~~ 273 (522)
+.+|+...|...+.. .+||+++|+. +.|...... .|+..... .-++..+... ...+.
T Consensus 207 t~~D~v~~l~~~gh~-g~It~iSRrG--l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~ 283 (474)
T COG4529 207 TSIDQVLVLRRRGHK-GPITAISRRG--LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDG 283 (474)
T ss_pred hhHHHHHHHhccCCc-cceEEEeccc--cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 999999999997654 6799999998 445443222 22111111 1111111100 00111
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecCceeEecC-
Q 009917 274 LLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQDFSFCED- 352 (522)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~i~~~~~~- 352 (522)
++.....++..+....+..+.++........++++.|. +.....+.+.+|.++++.+.+.+++..
T Consensus 284 lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~R~a~~--------------v~~~~~~~~a~G~~~l~ag~~~~i~~~~ 349 (474)
T COG4529 284 LRPQGQWIWQNLPAVERRRFERHLRPIWDVHRFRLAPA--------------VQAAVPQLLAEGLLELVAGRVVSIDREG 349 (474)
T ss_pred hhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHhhhhHH--------------HHhhhhHHhhcchhheecCceeeccccc
Confidence 22222222222222223333344433333444444332 333444567788888888876655432
Q ss_pred -c--EEE----cCCCceecccEEEEecCCCCCcccccccccccccccccCCCCCCcccceeecC---------C--CCCc
Q 009917 353 -G--IVV----DGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREIIH---------P--QIPQ 414 (522)
Q Consensus 353 -g--v~~----~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~~~---------~--~~pn 414 (522)
+ |.+ ++.++.+++|+||.|||......+.. .++|.+.....-..+.+...++.+ + ..+|
T Consensus 350 eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s---~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~ 426 (474)
T COG4529 350 EGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSS---DPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTG 426 (474)
T ss_pred CCceEEeeccccCccceeeeeEEEEcCCcCcCCCccc---hHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccC
Confidence 2 444 24455589999999999987654321 122322211100001111122111 1 2479
Q ss_pred eEEEcccCCcch-----hhhHHHHHHHHHHHHc
Q 009917 415 LAIIGFSESISN-----LYTSEMRCRWLAELLD 442 (522)
Q Consensus 415 l~~iG~~~~~~~-----~~~~e~qa~~ia~~l~ 442 (522)
+|++|......+ ++..-.|+..+|+.+.
T Consensus 427 ~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 427 LFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred ceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 999996544332 3556677777777665
No 68
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.86 E-value=1.4e-20 Score=195.31 Aligned_cols=163 Identities=25% Similarity=0.324 Sum_probs=107.1
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+..|. |....++.+..
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~------------------------~~~~~~~~~~~ 199 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPD------------------------FKLEKEVIDRR 199 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCc------------------------ccCCHHHHHHH
Confidence 689999999999999999999999999999999999876542111 11113455555
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+.+.++++ .+.+++.|.. +. +... ....||+||+|||+.
T Consensus 200 ~~~~~~~gv--~~~~~~~v~~-~~-----------------------------~~~~------~~~~~d~vvlAtGa~-- 239 (471)
T PRK12810 200 IELMEAEGI--EFRTNVEVGK-DI-----------------------------TAEE------LLAEYDAVFLGTGAY-- 239 (471)
T ss_pred HHHHHhCCc--EEEeCCEECC-cC-----------------------------CHHH------HHhhCCEEEEecCCC--
Confidence 566777787 7777765521 10 0001 135799999999964
Q ss_pred CCCCCCCCCCCCCCccCceEEeeccCCCC-----chH--hhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEE
Q 009917 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDM-----DYE--AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLY 236 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~f~g~~~hs~~~~~~-----~~~--~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~ 236 (522)
.|+.+.+| |.+. .| +++..+|... ... .......+|+|+|||+|.+|+|+|..+...+. ++|+++.
T Consensus 240 ~~~~l~ip---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga--~~Vt~~~ 312 (471)
T PRK12810 240 KPRDLGIP---GRDL-DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGA--KSVTQRD 312 (471)
T ss_pred CCCcCCCC---CccC-CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC--CeEEEcc
Confidence 36667777 6442 22 3332222100 000 00123578999999999999999988887664 3588554
Q ss_pred c
Q 009917 237 R 237 (522)
Q Consensus 237 r 237 (522)
+
T Consensus 313 ~ 313 (471)
T PRK12810 313 I 313 (471)
T ss_pred c
Confidence 3
No 69
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.86 E-value=9.8e-21 Score=195.04 Aligned_cols=284 Identities=20% Similarity=0.222 Sum_probs=171.1
Q ss_pred HHHHHHHhc--CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH-HHHHHHhcCCc
Q 009917 17 LACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY-IQSYASHFDLR 93 (522)
Q Consensus 17 ~~a~~l~~~--g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~~~l~ 93 (522)
+||.+|++. +.+|+|||+++.++- .....+.-.........++..| .+.+.+++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~--------------------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv- 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSF--------------------ANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGI- 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeE--------------------EcCCCCeEeccccCCHHHcccCCHHHHHHhcCC-
Confidence 478888875 478999999875421 1000010001111112233333 3455677888
Q ss_pred cceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEE--eCEEEEeecccCCCCCCCCCC
Q 009917 94 KHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ--VDFVILCVGRFSDVPNIPEFP 171 (522)
Q Consensus 94 ~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~--~d~lvvAtG~~s~~p~~P~~p 171 (522)
+++++++|+.++..+ +.|.+.+..++ .++. ||+||+||| +.|+.|.+|
T Consensus 60 -~~~~~~~V~~id~~~------------------------~~v~~~~~~~~--~~~~~~yd~lIiATG---~~p~~~~i~ 109 (427)
T TIGR03385 60 -DVKTNHEVIEVNDER------------------------QTVVVRNNKTN--ETYEESYDYLILSPG---ASPIVPNIE 109 (427)
T ss_pred -eEEecCEEEEEECCC------------------------CEEEEEECCCC--CEEecCCCEEEECCC---CCCCCCCCC
Confidence 788899999998754 45665543222 3456 999999999 467888888
Q ss_pred CCCCCCccCceEEeeccCCCCchHh-hhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccceeecCCCCCC
Q 009917 172 PKKGPEAFHGKVIHSMDYSDMDYEA-AANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWG 250 (522)
Q Consensus 172 ~~~g~~~f~g~~~hs~~~~~~~~~~-~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g 250 (522)
|.+. ..+++.....+..... ......+++|+|||+|.+|+|+|..|++.+. +|+++.|++..+.+...
T Consensus 110 ---G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~~~~~~--- 178 (427)
T TIGR03385 110 ---GINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERILNKLFD--- 178 (427)
T ss_pred ---CcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccCccccC---
Confidence 6542 1233332221110000 0012468999999999999999999998764 49999988763222211
Q ss_pred CchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccccceeccCCcc
Q 009917 251 FPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKF 330 (522)
Q Consensus 251 ~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~ 330 (522)
.- ... .+
T Consensus 179 ----~~--------------------------------~~~-------------------------------------~~ 185 (427)
T TIGR03385 179 ----EE--------------------------------MNQ-------------------------------------IV 185 (427)
T ss_pred ----HH--------------------------------HHH-------------------------------------HH
Confidence 00 000 01
Q ss_pred cccccCCcEEEeecC-ceeEecCc--EEEcCCCceecccEEEEecCCCCCcccccccccccccccccCCCCCCcccceee
Q 009917 331 YDKVEEGSIILKKSQ-DFSFCEDG--IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAGSPTEKLPLYREI 407 (522)
Q Consensus 331 ~~~l~~g~v~v~~~~-i~~~~~~g--v~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ly~~~ 407 (522)
.+.+++.+|+++.+. +.++.+++ +++.+|++ +++|.||+|||++++..+++..... -+..+.+.....
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~l~~~gl~-------~~~~G~i~vd~~- 256 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEGEERVKVFTSGGV-YQADMVILATGIKPNSELAKDSGLK-------LGETGAIWVNEK- 256 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCE-EEeCEEEECCCccCCHHHHHhcCcc-------cCCCCCEEECCC-
Confidence 122334456666554 66666544 36778888 9999999999999987654322110 012233333333
Q ss_pred cCCCCCceEEEcccCC-----------cchhhhHHHHHHHHHHHHcCC
Q 009917 408 IHPQIPQLAIIGFSES-----------ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 408 ~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~ia~~l~g~ 444 (522)
+.++.||+|++|.+.. ......+..|++++|..|.|.
T Consensus 257 ~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 257 FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 3457999999995532 123567899999999999875
No 70
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.86 E-value=2.4e-20 Score=201.12 Aligned_cols=171 Identities=22% Similarity=0.348 Sum_probs=112.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||+|||++|..|++.|++|+|||+.+.+||.+.+.+|.. .-..++.++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~------------------------~l~~~~~~~ 382 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAF------------------------KLDKSLLAR 382 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCc------------------------cCCHHHHHH
Confidence 36899999999999999999999999999999999999866532221 111345555
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.++++|+ .+++++.|.. . +++.+ ....||+||+|||+.
T Consensus 383 ~~~~~~~~Gv--~~~~~~~v~~----~--------------------------i~~~~------~~~~~DavilAtGa~- 423 (654)
T PRK12769 383 RREIFSAMGI--EFELNCEVGK----D--------------------------ISLES------LLEDYDAVFVGVGTY- 423 (654)
T ss_pred HHHHHHHCCe--EEECCCEeCC----c--------------------------CCHHH------HHhcCCEEEEeCCCC-
Confidence 5666777887 7777776521 0 11111 124699999999975
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCC--------CCchH--hhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCce
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYS--------DMDYE--AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~--------~~~~~--~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~V 232 (522)
.+..+.+| |.+. .| +++..+|. ..... .......||+|+|||+|.+|+|+|..+.+.+. ++|
T Consensus 424 -~~~~l~i~---g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga--~~V 495 (654)
T PRK12769 424 -RSMKAGLP---NEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGA--SNV 495 (654)
T ss_pred -CCCCCCCC---CCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC--CeE
Confidence 34445566 5432 23 22211110 00000 00012578999999999999999998887764 359
Q ss_pred EEEEcccceeec
Q 009917 233 TVLYRTEHWNIP 244 (522)
Q Consensus 233 t~v~r~~~~~~p 244 (522)
|++.|+....+|
T Consensus 496 t~i~~~~~~~~~ 507 (654)
T PRK12769 496 TCAYRRDEANMP 507 (654)
T ss_pred EEeEecCCCCCC
Confidence 999987653333
No 71
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.85 E-value=3.6e-20 Score=191.64 Aligned_cols=170 Identities=26% Similarity=0.428 Sum_probs=113.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+.+|. |....++.++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~------------------------~~~~~~~~~~~ 197 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPS------------------------FKLDKAVLSRR 197 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCcc------------------------ccCCHHHHHHH
Confidence 689999999999999999999999999999999999876542221 11124566777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+.++++|+ .++++++|... +++.+ ....||.||+|||+.
T Consensus 198 ~~~~~~~Gv--~~~~~~~v~~~------------------------------~~~~~------~~~~~D~vilAtGa~-- 237 (467)
T TIGR01318 198 REIFTAMGI--EFHLNCEVGRD------------------------------ISLDD------LLEDYDAVFLGVGTY-- 237 (467)
T ss_pred HHHHHHCCC--EEECCCEeCCc------------------------------cCHHH------HHhcCCEEEEEeCCC--
Confidence 777888888 78888766210 11111 124699999999975
Q ss_pred CCCCCCCCCCCCCCccCceEEeeccCCC--------Cc--hHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceE
Q 009917 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSD--------MD--YEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCT 233 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~f~g~~~hs~~~~~--------~~--~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt 233 (522)
.+..+.+| |.+. .| +++..+|.. .. .........+|+|+|||+|.+|+|+|..+...+. ++||
T Consensus 238 ~~~~~~i~---g~~~-~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga--~~Vt 310 (467)
T TIGR01318 238 RSMRGGLP---GEDA-PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGA--ASVT 310 (467)
T ss_pred CCCcCCCC---CcCC-CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCC--CeEE
Confidence 23334566 5442 22 333221110 00 0000012468999999999999999999887764 3599
Q ss_pred EEEcccceeec
Q 009917 234 VLYRTEHWNIP 244 (522)
Q Consensus 234 ~v~r~~~~~~p 244 (522)
++.|++...+|
T Consensus 311 vv~r~~~~~~~ 321 (467)
T TIGR01318 311 CAYRRDEANMP 321 (467)
T ss_pred EEEecCcccCC
Confidence 99997754444
No 72
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.85 E-value=2.1e-20 Score=182.31 Aligned_cols=269 Identities=16% Similarity=0.240 Sum_probs=178.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCC--ceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~--~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (522)
.+.++|||+|++|..|+.++++.|. +++++-+...+ .|...+ .+.+... ....+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~------pydr~~---------Ls~~~~~--------~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL------PYDRAR---------LSKFLLT--------VGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC------cccchh---------cccceee--------cccccc
Confidence 3679999999999999999999876 57776654332 111111 0111101 112222
Q ss_pred HHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecc
Q 009917 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (522)
Q Consensus 81 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~ 160 (522)
....++.+.+++ .+.+++.|+.++... .+|.+.++ +++.|++|++|||+
T Consensus 131 ~r~~e~Yke~gI--e~~~~t~v~~~D~~~------------------------K~l~~~~G-----e~~kys~LilATGs 179 (478)
T KOG1336|consen 131 KRTPEFYKEKGI--ELILGTSVVKADLAS------------------------KTLVLGNG-----ETLKYSKLIIATGS 179 (478)
T ss_pred ccChhhHhhcCc--eEEEcceeEEeeccc------------------------cEEEeCCC-----ceeecceEEEeecC
Confidence 223345667788 899999999999865 57888887 79999999999994
Q ss_pred cCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 161 ~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.|+.|++| |.+.. .+....+..+.. ......-.+++|+|+|+|..|+|++.+|...+ ++||++.+.+.
T Consensus 180 ---~~~~l~~p---G~~~~--nv~~ireieda~-~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~---~~VT~V~~e~~ 247 (478)
T KOG1336|consen 180 ---SAKTLDIP---GVELK--NVFYLREIEDAN-RLVAAIQLGGKVVCVGGGFIGMEVAAALVSKA---KSVTVVFPEPW 247 (478)
T ss_pred ---ccccCCCC---Ccccc--ceeeeccHHHHH-HHHHHhccCceEEEECchHHHHHHHHHHHhcC---ceEEEEccCcc
Confidence 57888888 76521 122222222111 01123345788999999999999999999875 45999998774
Q ss_pred eeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccc
Q 009917 241 WNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSS 320 (522)
Q Consensus 241 ~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 320 (522)
++|+.. .
T Consensus 248 -~~~~lf----------~-------------------------------------------------------------- 254 (478)
T KOG1336|consen 248 -LLPRLF----------G-------------------------------------------------------------- 254 (478)
T ss_pred -chhhhh----------h--------------------------------------------------------------
Confidence 555421 0
Q ss_pred cceeccCCcccccccCCcEEEeecC-ceeEecCc------EEEcCCCceecccEEEEecCCCCCcccccccccccccccc
Q 009917 321 CLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG------IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYL 393 (522)
Q Consensus 321 ~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~g------v~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~ 393 (522)
+.+...+.+.+++.+|++..+. +.++.++. |.+.||++ +++|.||+++|-+|+.++.+. . .
T Consensus 255 ---~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~-l~adlvv~GiG~~p~t~~~~~-g-------~ 322 (478)
T KOG1336|consen 255 ---PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT-LEADLVVVGIGIKPNTSFLEK-G-------I 322 (478)
T ss_pred ---HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCE-eccCeEEEeeccccccccccc-c-------c
Confidence 0011223344566678887776 66665442 88899999 999999999999999876543 1 1
Q ss_pred cCCCCCCcccceeecCCCCCceEEEcccCC
Q 009917 394 AGSPTEKLPLYREIIHPQIPQLAIIGFSES 423 (522)
Q Consensus 394 ~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~ 423 (522)
..+..+.+.++.. +.+++||+|++|...+
T Consensus 323 ~~~~~G~i~V~~~-f~t~~~~VyAiGDva~ 351 (478)
T KOG1336|consen 323 LLDSKGGIKVDEF-FQTSVPNVYAIGDVAT 351 (478)
T ss_pred eecccCCEeehhc-eeeccCCcccccceee
Confidence 1134455556554 4566999999996543
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.83 E-value=2.9e-19 Score=200.03 Aligned_cols=286 Identities=14% Similarity=0.127 Sum_probs=168.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.+||+|||||||||+||..|++.|++|+|||+.+.+||.+..... . ... .+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~--------------~-------~~g-~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE--------------T-------IDG-KPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc--------------c-------cCC-ccHHHHHHH
Confidence 368999999999999999999999999999999999997754110 0 000 112333222
Q ss_pred HHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEE-Ee-------cCC-CCceeEEEeC
Q 009917 83 IQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA-VE-------DAK-NHSTEVHQVD 152 (522)
Q Consensus 83 l~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------~~~-~g~~~~~~~d 152 (522)
+.+-++.+ ++ .+..+++|..+.... ....+. .. ++. .+...++.||
T Consensus 221 ~~~~l~~~~~v--~v~~~t~V~~i~~~~----------------------~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~ 276 (985)
T TIGR01372 221 TVAELTAMPEV--TLLPRTTAFGYYDHN----------------------TVGALERVTDHLDAPPKGVPRERLWRIRAK 276 (985)
T ss_pred HHHHHhcCCCc--EEEcCCEEEEEecCC----------------------eEEEEEEeeeccccccCCccccceEEEEcC
Confidence 33333334 35 677788888775421 000010 00 000 0112368999
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCce
Q 009917 153 FVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (522)
Q Consensus 153 ~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~V 232 (522)
.||+|||+ .++.|.+| |.+. .| ++......... .......+++|+|||+|.+|+|+|..|+..+.. .|
T Consensus 277 ~VILATGa---~~r~~pip---G~~~-pg-V~~~~~~~~~l--~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~--vV 344 (985)
T TIGR01372 277 RVVLATGA---HERPLVFA---NNDR-PG-VMLAGAARTYL--NRYGVAPGKRIVVATNNDSAYRAAADLLAAGIA--VV 344 (985)
T ss_pred EEEEcCCC---CCcCCCCC---CCCC-CC-cEEchHHHHHH--HhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCc--eE
Confidence 99999995 56777777 6432 22 22221111100 001234789999999999999999999987642 47
Q ss_pred EEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCC
Q 009917 233 TVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKH 312 (522)
Q Consensus 233 t~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 312 (522)
+++.+.+. +.+.
T Consensus 345 ~vv~~~~~-~~~~------------------------------------------------------------------- 356 (985)
T TIGR01372 345 AIIDARAD-VSPE------------------------------------------------------------------- 356 (985)
T ss_pred EEEccCcc-hhHH-------------------------------------------------------------------
Confidence 77766542 1000
Q ss_pred cccccccccceeccCCcccccccCCcEEEeecC-ceeEecC----cEEEc----CCCceecccEEEEecCCCCCcccccc
Q 009917 313 SFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCED----GIVVD----GQTTPLKTDLVILATGFKGDVKLKNI 383 (522)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~----gv~~~----dG~~~~~~D~VI~aTG~~~~~~l~~~ 383 (522)
+.+.+++.+|+++.+. +.++.++ +|++. ++++ +++|.|++++|++|+..|...
T Consensus 357 -----------------l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~-i~~D~V~va~G~~Pnt~L~~~ 418 (985)
T TIGR01372 357 -----------------ARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQR-LEADALAVSGGWTPVVHLFSQ 418 (985)
T ss_pred -----------------HHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEE-EECCEEEEcCCcCchhHHHHh
Confidence 0112233345555544 4455433 34554 3455 999999999999999876543
Q ss_pred cccccccccccCCCCCCcccceeecCCCCCceEEEcccCCcchhhhHHHHHHHHHHHH
Q 009917 384 FLSQTFQDYLAGSPTEKLPLYREIIHPQIPQLAIIGFSESISNLYTSEMRCRWLAELL 441 (522)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~~~~~~~~~e~qa~~ia~~l 441 (522)
.... +. + +.. ...+ +-.++.|++|++|.......+..+..+++.++..+
T Consensus 419 lg~~-~~--~--~~~--~~~~--~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 419 RGGK-LA--W--DAA--IAAF--LPGDAVQGCILAGAANGLFGLAAALADGAAAGAAA 467 (985)
T ss_pred cCCC-ee--e--ccc--cCce--ecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHH
Confidence 2211 00 0 000 0011 11255899999997766555556777777666554
No 74
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4e-19 Score=155.35 Aligned_cols=183 Identities=20% Similarity=0.330 Sum_probs=130.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
.+|+|||+||++..+|..+.+..++.++||-.- .|| .-|+-.+.+....-.|+.||-. ..+.++.+.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~~----i~pGGQLtTTT~veNfPGFPdg-------i~G~~l~d~m 76 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-ANG----IAPGGQLTTTTDVENFPGFPDG-------ITGPELMDKM 76 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeee-ccC----cCCCceeeeeeccccCCCCCcc-------cccHHHHHHH
Confidence 489999999999999999999999999999532 111 2223333333333344444322 2568899999
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
++.+.+||. .| +...|.+++... .-+.|.++. +.+.+|.||+|||..
T Consensus 77 rkqs~r~Gt--~i-~tEtVskv~~ss----------------------kpF~l~td~------~~v~~~avI~atGAs-- 123 (322)
T KOG0404|consen 77 RKQSERFGT--EI-ITETVSKVDLSS----------------------KPFKLWTDA------RPVTADAVILATGAS-- 123 (322)
T ss_pred HHHHHhhcc--ee-eeeehhhccccC----------------------CCeEEEecC------CceeeeeEEEecccc--
Confidence 999999997 44 344677777654 336666544 478999999999964
Q ss_pred CCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+...+|+. |...|-.+-+.++..++-. ...|++|-.+|||+|.||+|=|..|.+.+. +|.+++|+.+
T Consensus 124 -AkRl~~pg~-ge~~fWqrGiSaCAVCDGa----apifrnk~laVIGGGDsA~EEA~fLtkyas---kVyii~Rrd~ 191 (322)
T KOG0404|consen 124 -AKRLHLPGE-GEGEFWQRGISACAVCDGA----APIFRNKPLAVIGGGDSAMEEALFLTKYAS---KVYIIHRRDH 191 (322)
T ss_pred -eeeeecCCC-CcchHHhcccchhhcccCc----chhhcCCeeEEEcCcHHHHHHHHHHHhhcc---EEEEEEEhhh
Confidence 344456622 3334665556666666522 346999999999999999999999999875 4999999876
No 75
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.82 E-value=3e-19 Score=191.69 Aligned_cols=167 Identities=24% Similarity=0.379 Sum_probs=112.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||||++||++|..|++.|++|+|||+.+.+||.|.+..|..+ .+ .++.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~-----------------------l~-~~~~~~ 365 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFK-----------------------LD-KTVLSQ 365 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCccc-----------------------CC-HHHHHH
Confidence 478999999999999999999999999999999999998776322211 11 355566
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.++.+|+ .++++++|.. + +++.+ ....||.||+|||+.
T Consensus 366 ~~~~~~~~Gv--~~~~~~~v~~---~---------------------------~~~~~------l~~~~DaV~latGa~- 406 (639)
T PRK12809 366 RREIFTAMGI--DFHLNCEIGR---D---------------------------ITFSD------LTSEYDAVFIGVGTY- 406 (639)
T ss_pred HHHHHHHCCe--EEEcCCccCC---c---------------------------CCHHH------HHhcCCEEEEeCCCC-
Confidence 6667777887 7777766521 0 11111 134699999999975
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCC--------CCch--HhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCce
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYS--------DMDY--EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPC 232 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~--------~~~~--~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~V 232 (522)
.+..+.+| |.+. .| +++..+|. .... ........+|+|+|||+|.+|+|+|..+...+. ++|
T Consensus 407 -~~~~~~i~---g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga--~~V 478 (639)
T PRK12809 407 -GMMRADLP---HEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA--ASV 478 (639)
T ss_pred -CCCCCCCC---CCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC--CeE
Confidence 34555566 5432 23 23221110 0000 000123578999999999999999998877664 359
Q ss_pred EEEEcccc
Q 009917 233 TVLYRTEH 240 (522)
Q Consensus 233 t~v~r~~~ 240 (522)
|++.|+..
T Consensus 479 t~v~rr~~ 486 (639)
T PRK12809 479 TCAYRRDE 486 (639)
T ss_pred EEeeecCc
Confidence 99998764
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.82 E-value=3.5e-19 Score=189.15 Aligned_cols=164 Identities=24% Similarity=0.368 Sum_probs=106.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+..|.. .+ + .++.+.-
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~--------------~~---------~-~~~~~~~ 193 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAY--------------RL---------P-REVLDAE 193 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCc--------------cC---------C-HHHHHHH
Confidence 6899999999999999999999999999999999998765422211 11 1 3444444
Q ss_pred HHHHHhcCCccceEeeeeE-EEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 84 QSYASHFDLRKHIKFNRKV-VGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.+.+.++++ .+.+++.+ .++... . ....||+||+|||..
T Consensus 194 l~~~~~~Gv--~~~~~~~~~~~~~~~-------------------------------~------~~~~~D~Vi~AtG~~- 233 (564)
T PRK12771 194 IQRILDLGV--EVRLGVRVGEDITLE-------------------------------Q------LEGEFDAVFVAIGAQ- 233 (564)
T ss_pred HHHHHHCCC--EEEeCCEECCcCCHH-------------------------------H------HHhhCCEEEEeeCCC-
Confidence 555667777 67776554 221111 0 112589999999975
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+..+.++ |.+ ..| +++...+..... .......+|+|+|||+|.+|+|.+..+.+.+. +.|+++.|.+.
T Consensus 234 -~~~~~~i~---g~~-~~g-v~~~~~~l~~~~-~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga--~~v~ii~r~~~ 302 (564)
T PRK12771 234 -LGKRLPIP---GED-AAG-VLDAVDFLRAVG-EGEPPFLGKRVVVIGGGNTAMDAARTARRLGA--EEVTIVYRRTR 302 (564)
T ss_pred -CCCcCCCC---CCc-cCC-cEEHHHHHHHhh-ccCCcCCCCCEEEECChHHHHHHHHHHHHcCC--CEEEEEEecCc
Confidence 23334455 533 223 333222211000 00123568999999999999999988877663 35999998764
No 77
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.81 E-value=4.7e-19 Score=180.73 Aligned_cols=294 Identities=17% Similarity=0.192 Sum_probs=188.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhc---CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChh
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~---g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (522)
|.+.+++|||.|.+|..+...+++. -+++++|-..+++. |...++ +.. ...--+.+
T Consensus 1 m~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n------Y~Ri~L---------s~v------l~~~~~~e 59 (793)
T COG1251 1 MKKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN------YNRILL---------SSV------LAGEKTAE 59 (793)
T ss_pred CCceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc------ccceee---------ccc------cCCCccHH
Confidence 6678999999999999999999993 46899998776642 222222 100 01111345
Q ss_pred HHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEe
Q 009917 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (522)
Q Consensus 78 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvA 157 (522)
++.-.-.+++++.++ +++.+.+|+.|++.. ..|+.+.+ .++.||.||+|
T Consensus 60 di~l~~~dwy~~~~i--~L~~~~~v~~idr~~------------------------k~V~t~~g-----~~~~YDkLilA 108 (793)
T COG1251 60 DISLNRNDWYEENGI--TLYTGEKVIQIDRAN------------------------KVVTTDAG-----RTVSYDKLIIA 108 (793)
T ss_pred HHhccchhhHHHcCc--EEEcCCeeEEeccCc------------------------ceEEccCC-----cEeecceeEEe
Confidence 666566777888898 899999999999876 57888777 78999999999
Q ss_pred ecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEc
Q 009917 158 VGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (522)
Q Consensus 158 tG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r 237 (522)
|| +.|.+|++| |.+.+ .++--..+.+..... ......++-+|||+|.-|+|.|..|.+.+-. |++++-
T Consensus 109 TG---S~pfi~PiP---G~~~~--~v~~~R~i~D~~am~-~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~---~~Vvh~ 176 (793)
T COG1251 109 TG---SYPFILPIP---GSDLP--GVFVYRTIDDVEAML-DCARNKKKAVVIGGGLLGLEAARGLKDLGME---VTVVHI 176 (793)
T ss_pred cC---ccccccCCC---CCCCC--CeeEEecHHHHHHHH-HHHhccCCcEEEccchhhhHHHHHHHhCCCc---eEEEee
Confidence 99 568888899 77654 233333333322111 1234456679999999999999999998765 888886
Q ss_pred ccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCccccc
Q 009917 238 TEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQE 317 (522)
Q Consensus 238 ~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 317 (522)
.+. ++-+.. ......+++.
T Consensus 177 ~~~-lMerQL--------------------------------------D~~ag~lL~~---------------------- 195 (793)
T COG1251 177 APT-LMERQL--------------------------------------DRTAGRLLRR---------------------- 195 (793)
T ss_pred cch-HHHHhh--------------------------------------hhHHHHHHHH----------------------
Confidence 554 221110 0000111111
Q ss_pred ccccceeccCCcccccccCCcEEEeecC-ceeE----ecCcEEEcCCCceecccEEEEecCCCCCccccccccccccccc
Q 009917 318 LSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSF----CEDGIVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDY 392 (522)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~----~~~gv~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~ 392 (522)
.+.+.+++++.+. .+.+ ...+|.|+||+. +++|.||+|+|++|+..+...-.
T Consensus 196 ---------------~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~-i~ad~VV~a~GIrPn~ela~~aG------- 252 (793)
T COG1251 196 ---------------KLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTE-IPADLVVMAVGIRPNDELAKEAG------- 252 (793)
T ss_pred ---------------HHHhhcceeecccchhhhhcCcceeeEeecCCCc-ccceeEEEecccccccHhHHhcC-------
Confidence 1122223333222 1111 224689999999 99999999999999976543211
Q ss_pred ccCCCCCCcccceeecCCCCCceEEEcccC-----CcchhhhHHHHHHHHHHHHcCCC
Q 009917 393 LAGSPTEKLPLYREIIHPQIPQLAIIGFSE-----SISNLYTSEMRCRWLAELLDGAV 445 (522)
Q Consensus 393 ~~~~~~~~~~ly~~~~~~~~pnl~~iG~~~-----~~~~~~~~e~qa~~ia~~l~g~~ 445 (522)
+.. +.++.. ...+.++.|++|++|=+. ..+....+--|++.+|..+.+..
T Consensus 253 -lav-nrGIvv-nd~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~ 307 (793)
T COG1251 253 -LAV-NRGIVV-NDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGE 307 (793)
T ss_pred -cCc-CCCeee-cccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCc
Confidence 101 112333 334567899999999221 12233445568999999887763
No 78
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.81 E-value=2.2e-18 Score=179.05 Aligned_cols=166 Identities=22% Similarity=0.331 Sum_probs=109.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||||++|+++|..|++.|++|+|||+.+.+||...+..| .|....++..+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip------------------------~~~~~~~~~~~~ 199 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIP------------------------NMKLDKAIVDRR 199 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCC------------------------CccCCHHHHHHH
Confidence 68999999999999999999999999999999988876443111 111113455555
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+.++.+++ .+++++.|. .+ ++.+. ....||.||+|||..
T Consensus 200 ~~~~~~~Gv--~~~~~~~v~-~~-----------------------------~~~~~------~~~~~d~VilAtGa~-- 239 (485)
T TIGR01317 200 IDLLSAEGI--DFVTNTEIG-VD-----------------------------ISADE------LKEQFDAVVLAGGAT-- 239 (485)
T ss_pred HHHHHhCCC--EEECCCEeC-Cc-----------------------------cCHHH------HHhhCCEEEEccCCC--
Confidence 566677787 777776663 11 10000 235799999999964
Q ss_pred CCCCCCCCCCCCCCccCceEEeeccCC--------CCch-HhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEE
Q 009917 164 VPNIPEFPPKKGPEAFHGKVIHSMDYS--------DMDY-EAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTV 234 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~f~g~~~hs~~~~--------~~~~-~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~ 234 (522)
.|..|.+| |.+ ..| +....++. .... ........+|+|+|||+|.+|+|+|..+...+. +.|++
T Consensus 240 ~~~~l~i~---G~~-~~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga--~~V~v 312 (485)
T TIGR01317 240 KPRDLPIP---GRE-LKG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGA--ASVHQ 312 (485)
T ss_pred CCCcCCCC---CcC-CCC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC--CEEEE
Confidence 36777788 643 222 22211110 0000 000112578999999999999999888777654 35999
Q ss_pred EEcccc
Q 009917 235 LYRTEH 240 (522)
Q Consensus 235 v~r~~~ 240 (522)
+.+.+.
T Consensus 313 v~~~~~ 318 (485)
T TIGR01317 313 FEIMPK 318 (485)
T ss_pred EEecCC
Confidence 987664
No 79
>PRK09897 hypothetical protein; Provisional
Probab=99.81 E-value=9.9e-18 Score=173.52 Aligned_cols=195 Identities=18% Similarity=0.248 Sum_probs=123.5
Q ss_pred CcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCccccc--cccccceeecCCccceeecCCC-----CCC-------
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAW--IKTVETTMLQTPKQLYQFSDYP-----WPD------- 67 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg~w--~~~~~~~~~~~~~~~~~~~~~~-----~~~------- 67 (522)
++|+|||||++|+++|.+|.+. .++|+|||++..+|..+ ...-++..++++...++.+..+ |..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 5899999999999999999885 36899999998888443 3222222222222112211110 000
Q ss_pred ---------CCCCCCCChhHHHHHHHHHHHhc-------CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 009917 68 ---------SVTTDFPDHNQVLDYIQSYASHF-------DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (522)
Q Consensus 68 ---------~~~~~~~~~~~~~~yl~~~~~~~-------~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
.....|+++..+.+|+++..+.+ +..-.++.+++|++++..+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---------------------- 139 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN---------------------- 139 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC----------------------
Confidence 00246888888888888765553 2111455677999998754
Q ss_pred CcEEEEEecCCCCceeEEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcC
Q 009917 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGL 211 (522)
Q Consensus 132 ~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~ 211 (522)
+.|.|++.++. ..+.+|+||+|||+. .|..+. +... +....|.... .....+.+|+|+|.
T Consensus 140 ~g~~V~t~~gg----~~i~aD~VVLAtGh~--~p~~~~-----~~~~-----yi~~pw~~~~----~~~i~~~~V~I~Gt 199 (534)
T PRK09897 140 AGVMLATNQDL----PSETFDLAVIATGHV--WPDEEE-----ATRT-----YFPSPWSGLM----EAKVDACNVGIMGT 199 (534)
T ss_pred CEEEEEECCCC----eEEEcCEEEECCCCC--CCCCCh-----hhcc-----ccCCCCcchh----hcCCCCCeEEEECC
Confidence 45888775532 568999999999975 343321 2111 1123333211 12234799999999
Q ss_pred CCCHHHHHHHHhhhc------------------CCCCceEEEEcccc
Q 009917 212 QKSALDIAMECTTAN------------------GLENPCTVLYRTEH 240 (522)
Q Consensus 212 G~sg~dia~~l~~~~------------------~~~~~Vt~v~r~~~ 240 (522)
|.|++|++..|...+ ++..+|++++|+..
T Consensus 200 GLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 200 SLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred CHHHHHHHHHHHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 999999999998552 12356999999874
No 80
>PRK13984 putative oxidoreductase; Provisional
Probab=99.81 E-value=8.6e-19 Score=187.95 Aligned_cols=165 Identities=23% Similarity=0.314 Sum_probs=106.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+..|. +....++..+
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~------------------------~~~~~~~~~~ 338 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPS------------------------YRLPDEALDK 338 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCc------------------------ccCCHHHHHH
Confidence 3689999999999999999999999999999999998865532111 1111344455
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.++++++ .+++++.|.. . ++... ....||+||+|||+.
T Consensus 339 ~~~~~~~~gv--~~~~~~~v~~----~--------------------------~~~~~------~~~~yD~vilAtGa~- 379 (604)
T PRK13984 339 DIAFIEALGV--KIHLNTRVGK----D--------------------------IPLEE------LREKHDAVFLSTGFT- 379 (604)
T ss_pred HHHHHHHCCc--EEECCCEeCC----c--------------------------CCHHH------HHhcCCEEEEEcCcC-
Confidence 4556677887 7777776621 0 11111 134799999999964
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHh----hhhccCCCEEEEEcCCCCHHHHHHHHhhhcC---CCCceEEE
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEA----AANLVKGKRVTVVGLQKSALDIAMECTTANG---LENPCTVL 235 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~----~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~---~~~~Vt~v 235 (522)
.|+.+++| |.+. .+ ++++.++....... ......+|+|+|||+|.+|+|+|..+++.+. ...+|+++
T Consensus 380 -~~r~l~i~---G~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~ 453 (604)
T PRK13984 380 -LGRSTRIP---GTDH-PD-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT 453 (604)
T ss_pred -CCccCCCC---CcCC-cC-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence 46777787 6542 12 33333321100000 0011347999999999999999999987642 11347776
Q ss_pred E
Q 009917 236 Y 236 (522)
Q Consensus 236 ~ 236 (522)
.
T Consensus 454 ~ 454 (604)
T PRK13984 454 S 454 (604)
T ss_pred c
Confidence 4
No 81
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.78 E-value=1.8e-17 Score=169.63 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=110.6
Q ss_pred CCcEEEECCChhHHHHHHHHHh--cCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLL--KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~--~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (522)
.++|+|||||||||+||..|++ .|++|+|||+.+.+||...+-. .+.++....+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv-----------------------aP~~~~~k~v~ 82 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV-----------------------APDHPETKNVT 82 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc-----------------------CCCcchhHHHH
Confidence 4789999999999999999987 7999999999999998765410 12233334566
Q ss_pred HHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecc
Q 009917 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (522)
Q Consensus 81 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~ 160 (522)
.++..+.+..++ .++.|.+| + ..+++.+. ...||.||+|||+
T Consensus 83 ~~~~~~~~~~~v--~~~~nv~v------g------------------------~dvtl~~L------~~~yDaVIlAtGa 124 (491)
T PLN02852 83 NQFSRVATDDRV--SFFGNVTL------G------------------------RDVSLSEL------RDLYHVVVLAYGA 124 (491)
T ss_pred HHHHHHHHHCCe--EEEcCEEE------C------------------------ccccHHHH------hhhCCEEEEecCC
Confidence 666776666555 44444433 1 11333332 2479999999996
Q ss_pred cCCCCCCCCCCCCCCCCccCceEEeeccCCCCch------HhhhhccCCCEEEEEcCCCCHHHHHHHHhhh---------
Q 009917 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY------EAAANLVKGKRVTVVGLQKSALDIAMECTTA--------- 225 (522)
Q Consensus 161 ~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~------~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~--------- 225 (522)
. .++.+.+| |.+. .| ++...+|..... ........+++|+|||+|++|+|+|..|++.
T Consensus 125 ~--~~~~l~Ip---G~d~-~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi 197 (491)
T PLN02852 125 E--SDRRLGIP---GEDL-PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDI 197 (491)
T ss_pred C--CCCCCCCC---CCCC-CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccc
Confidence 4 24566677 6442 22 444333311000 0001124689999999999999999998764
Q ss_pred ---------cCCCCceEEEEcccc
Q 009917 226 ---------NGLENPCTVLYRTEH 240 (522)
Q Consensus 226 ---------~~~~~~Vt~v~r~~~ 240 (522)
....++|+++.|+..
T Consensus 198 ~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 198 AEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred cHHHHHHHhhCCCCEEEEEEcCCh
Confidence 111357999999864
No 82
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.1e-17 Score=150.27 Aligned_cols=175 Identities=21% Similarity=0.299 Sum_probs=127.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.+||+|||+||+|-+||...+++|++.-++- +++||+-..... +-.|- .-.+..+.++..-
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~---------IENfI--------sv~~teGpkl~~a 271 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMG---------IENFI--------SVPETEGPKLAAA 271 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccc---------hhhee--------ccccccchHHHHH
Confidence 4799999999999999999999999866553 347876443100 00111 2233456788899
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
|+.-.++|++ .+.--.+++++++.. . ..+...|++.++ -.+.++.||++||...
T Consensus 272 le~Hv~~Y~v--Dimn~qra~~l~~a~--~-----------------~~~l~ev~l~nG-----avLkaktvIlstGArW 325 (520)
T COG3634 272 LEAHVKQYDV--DVMNLQRASKLEPAA--V-----------------EGGLIEVELANG-----AVLKARTVILATGARW 325 (520)
T ss_pred HHHHHhhcCc--hhhhhhhhhcceecC--C-----------------CCccEEEEecCC-----ceeccceEEEecCcch
Confidence 9999999987 555555677777653 0 134578999888 5799999999999753
Q ss_pred CCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEc
Q 009917 163 DVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (522)
Q Consensus 163 ~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r 237 (522)
+--++| |.+.|+.+-+.-+..++ ...|+||+|+|||+|+||+|.|-.|+-...+ ||++.=
T Consensus 326 ---Rn~nvP---GE~e~rnKGVayCPHCD------GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~h---VtllEF 385 (520)
T COG3634 326 ---RNMNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEF 385 (520)
T ss_pred ---hcCCCC---chHHHhhCCeeeCCCCC------CcccCCceEEEECCCcchHHHHHhHHhhhhe---eeeeec
Confidence 444566 88888655444344444 3569999999999999999999999987655 998873
No 83
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.7e-16 Score=147.23 Aligned_cols=198 Identities=19% Similarity=0.266 Sum_probs=124.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEec---CC-----Cccccccc--cccceeecCCccc----eeecCCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA---RS-----DIGGAWIK--TVETTMLQTPKQL----YQFSDYPWPDS 68 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~---~~-----~~Gg~w~~--~~~~~~~~~~~~~----~~~~~~~~~~~ 68 (522)
.+|++|||||.+||++|+..+..|.+|.++|- .+ .+||+|.+ +.|...++..+-+ ..-..+.|.-.
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~~ 98 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNVD 98 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 37899999999999999999999999999982 22 35677666 5555443332211 11111223211
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCccceEeee-eEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCcee
Q 009917 69 VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNR-KVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (522)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~ 147 (522)
....-+....+.+-.+.-.+..+---++.++. +|.-++.-+ .|. +..++...+.. |+.+
T Consensus 99 e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~Nsyg-----------------eFv--~~h~I~at~~~-gk~~ 158 (503)
T KOG4716|consen 99 EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYG-----------------EFV--DPHKIKATNKK-GKER 158 (503)
T ss_pred cccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecce-----------------eec--ccceEEEecCC-CceE
Confidence 11223344555555555555544322334432 233333221 011 12334433332 5678
Q ss_pred EEEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcC
Q 009917 148 VHQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANG 227 (522)
Q Consensus 148 ~~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~ 227 (522)
.+.++.+||||| ..|++|+|| |..++ -+.|.+.-.+ ...+.+-+|||+|..|+|+|.-|+..+-
T Consensus 159 ~~ta~~fvIatG---~RPrYp~Ip---G~~Ey---~ITSDDlFsl-------~~~PGkTLvVGa~YVaLECAgFL~gfg~ 222 (503)
T KOG4716|consen 159 FLTAENFVIATG---LRPRYPDIP---GAKEY---GITSDDLFSL-------PYEPGKTLVVGAGYVALECAGFLKGFGY 222 (503)
T ss_pred EeecceEEEEec---CCCCCCCCC---Cceee---eecccccccc-------cCCCCceEEEccceeeeehhhhHhhcCC
Confidence 899999999999 679999999 86654 4666665543 3556678899999999999999998876
Q ss_pred CCCceEEEEccc
Q 009917 228 LENPCTVLYRTE 239 (522)
Q Consensus 228 ~~~~Vt~v~r~~ 239 (522)
. ||++.|+=
T Consensus 223 ~---vtVmVRSI 231 (503)
T KOG4716|consen 223 D---VTVMVRSI 231 (503)
T ss_pred C---cEEEEEEe
Confidence 5 99999863
No 84
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.60 E-value=3.7e-14 Score=134.16 Aligned_cols=170 Identities=24% Similarity=0.302 Sum_probs=109.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL 80 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (522)
+.+|+|||+||||+.+|..|+++ +++|+|+|+.+.++|.-++ .= .++.|.-..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy----------------GV-------APDHpEvKnvi 76 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY----------------GV-------APDHPEVKNVI 76 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee----------------cc-------CCCCcchhhHH
Confidence 46899999999999999999994 6899999999988776554 11 23333334455
Q ss_pred HHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecc
Q 009917 81 DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (522)
Q Consensus 81 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~ 160 (522)
.-+...+++... .+.-|.+| + -.|++.. -+-.||.||+|.|+
T Consensus 77 ntFt~~aE~~rf--sf~gNv~v------G------------------------~dvsl~e------L~~~ydavvLaYGa 118 (468)
T KOG1800|consen 77 NTFTKTAEHERF--SFFGNVKV------G------------------------RDVSLKE------LTDNYDAVVLAYGA 118 (468)
T ss_pred HHHHHHhhccce--EEEeccee------c------------------------ccccHHH------HhhcccEEEEEecC
Confidence 556666665322 12222222 0 0122222 24579999999998
Q ss_pred cCCCCCCCCCCCCCCCCccCceEEeeccCCCCch-----HhhhhccCCCEEEEEcCCCCHHHHHHHHhhhc---------
Q 009917 161 FSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDY-----EAAANLVKGKRVTVVGLQKSALDIAMECTTAN--------- 226 (522)
Q Consensus 161 ~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~-----~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~--------- 226 (522)
. .++..+|| |.+ ..| ++-+..+..+.. +....++.+.+|+|||.|+.|+|+|.-|....
T Consensus 119 ~--~dR~L~IP---Ge~-l~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi 191 (468)
T KOG1800|consen 119 D--GDRRLDIP---GEE-LSG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDI 191 (468)
T ss_pred C--CCcccCCC---Ccc-ccc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCC
Confidence 5 57778888 655 222 333333322211 11234577999999999999999999877432
Q ss_pred ----------CCCCceEEEEcccc
Q 009917 227 ----------GLENPCTVLYRTEH 240 (522)
Q Consensus 227 ----------~~~~~Vt~v~r~~~ 240 (522)
+..+.|+++.|+..
T Consensus 192 ~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 192 PKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred cHHHHhhhhcCCcceEEEEeccCc
Confidence 11456888887653
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.58 E-value=1.4e-14 Score=155.58 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=34.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
.++|+|||||||||++|..|++.|++|+|||+.+..|+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 37999999999999999999999999999999765444
No 86
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.56 E-value=1.1e-13 Score=145.45 Aligned_cols=164 Identities=21% Similarity=0.282 Sum_probs=106.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+||+||+||.+|-+.|+.|+|+||.+++||...+-.|...+ . ..+.+.-
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkl-----------------------d-k~vv~rr 1841 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKL-----------------------D-KFVVQRR 1841 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccch-----------------------h-HHHHHHH
Confidence 789999999999999999999999999999999999987664444332 1 2344544
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.++..+-|+ ++..|+++-. +|.... -.-+.|.||+|+|+.
T Consensus 1842 v~ll~~egi--~f~tn~eigk------------------------------~vs~d~------l~~~~daiv~a~gst-- 1881 (2142)
T KOG0399|consen 1842 VDLLEQEGI--RFVTNTEIGK------------------------------HVSLDE------LKKENDAIVLATGST-- 1881 (2142)
T ss_pred HHHHHhhCc--eEEeeccccc------------------------------cccHHH------HhhccCeEEEEeCCC--
Confidence 555555666 5555544411 122211 245789999999974
Q ss_pred CCCCCCCCCCCCCCc----cCceEEeeccC--CCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEE
Q 009917 164 VPNIPEFPPKKGPEA----FHGKVIHSMDY--SDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLY 236 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~----f~g~~~hs~~~--~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~ 236 (522)
.|+-.++| |.+. |.-+.+|...- .+...+......+||+|+|||||.+|-|+...-.+++. ++|.-+.
T Consensus 1882 ~prdlpv~---grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~--~sv~n~e 1955 (2142)
T KOG0399|consen 1882 TPRDLPVP---GRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGC--KSVGNFE 1955 (2142)
T ss_pred CCcCCCCC---CccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhcc--ceeccee
Confidence 67776777 6442 22222332210 00000011234789999999999999998877666654 3454444
No 87
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.54 E-value=4.1e-14 Score=143.54 Aligned_cols=163 Identities=29% Similarity=0.413 Sum_probs=112.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+||||||+||++|..|.+.|++|+|||+.+.+||.-.+-.| .|--..++.+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP------------------------~~kl~k~i~d~~ 179 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIP------------------------DFKLPKDILDRR 179 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCc------------------------hhhccchHHHHH
Confidence 78999999999999999999999999999999999987655222 222235677777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.++.++.|+ .++.+++|-. .++.+. -..+||+|++|+|..
T Consensus 180 i~~l~~~Gv--~~~~~~~vG~------------------------------~it~~~------L~~e~Dav~l~~G~~-- 219 (457)
T COG0493 180 LELLERSGV--EFKLNVRVGR------------------------------DITLEE------LLKEYDAVFLATGAG-- 219 (457)
T ss_pred HHHHHHcCe--EEEEcceECC------------------------------cCCHHH------HHHhhCEEEEecccc--
Confidence 777788886 7777766531 122222 234569999999984
Q ss_pred CCCCCCCCCCCCCCccCceEEeeccCCCCchH--------hhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEE
Q 009917 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYE--------AAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVL 235 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~--------~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v 235 (522)
.|+.-++| |.+. .| +....+|...... ......+||+|+|||+|.||+|++......+. ++|+.+
T Consensus 220 ~~~~l~i~---g~d~-~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga--~~v~~~ 292 (457)
T COG0493 220 KPRPLDIP---GEDA-KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGA--KSVTCF 292 (457)
T ss_pred CCCCCCCC---CcCC-Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCC--eEEEEe
Confidence 67777777 5542 12 3333333211000 00122456999999999999999988777765 468888
Q ss_pred Ec
Q 009917 236 YR 237 (522)
Q Consensus 236 ~r 237 (522)
.|
T Consensus 293 ~~ 294 (457)
T COG0493 293 YR 294 (457)
T ss_pred cc
Confidence 63
No 88
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.54 E-value=4.5e-14 Score=142.24 Aligned_cols=42 Identities=31% Similarity=0.393 Sum_probs=38.2
Q ss_pred CCcEEEECCChhHHHHHHHHH-hcCCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLL-LKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~-~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
.++|+||||||||+++|..|+ +.|++|+|||+.+.+||.+++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 468999999999999999876 569999999999999998876
No 89
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.52 E-value=4.4e-13 Score=137.86 Aligned_cols=289 Identities=18% Similarity=0.158 Sum_probs=164.4
Q ss_pred EEEECCChhHHHHHHHHHhc--CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 6 IAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 6 vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|||+|++|+++|..|++. +.+++++.+..... |...+.+............+....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 60 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS--------------------YYRCPLSLYVGGGIASLEDLRYPP 60 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC--------------------CCCCccchHHhcccCCHHHhcccc
Confidence 58999999999999999885 45788887765432 111111111001111111111111
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
. +..+.++ .+..+++|..++... ..|.+.++ .+.||+||+|||.
T Consensus 61 ~-~~~~~~i--~~~~~~~v~~id~~~------------------------~~v~~~~g------~~~yd~LvlatGa--- 104 (415)
T COG0446 61 R-FNRATGI--DVRTGTEVTSIDPEN------------------------KVVLLDDG------EIEYDYLVLATGA--- 104 (415)
T ss_pred h-hHHhhCC--EEeeCCEEEEecCCC------------------------CEEEECCC------cccccEEEEcCCC---
Confidence 1 2234556 788888999998765 35666554 6899999999995
Q ss_pred CCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccceee
Q 009917 164 VPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNI 243 (522)
Q Consensus 164 ~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~~ 243 (522)
.|..+. . .+...+++...+....... ......++|+|||+|..|+++|..++..+. +|+++.+.+. +.
T Consensus 105 ~~~~~~-~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~-~~ 172 (415)
T COG0446 105 RPRPPP-I------SDWEGVVTLRLREDAEALK-GGAEPPKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADR-LG 172 (415)
T ss_pred cccCCC-c------cccCceEEECCHHHHHHHH-HHHhccCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccc-cc
Confidence 455553 1 0111122222222211000 111124899999999999999999999875 4999998876 32
Q ss_pred cCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccccce
Q 009917 244 PDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLT 323 (522)
Q Consensus 244 p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 323 (522)
+.... ..+...+
T Consensus 173 ~~~~~--------------------------------------~~~~~~~------------------------------ 184 (415)
T COG0446 173 GQLLD--------------------------------------PEVAEEL------------------------------ 184 (415)
T ss_pred hhhhh--------------------------------------HHHHHHH------------------------------
Confidence 32100 0000111
Q ss_pred eccCCcccccccCCcEEEeecC-ceeEecCc-------EEEcCCCceecccEEEEecCCCCCcccccccccccccccccC
Q 009917 324 ITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG-------IVVDGQTTPLKTDLVILATGFKGDVKLKNIFLSQTFQDYLAG 395 (522)
Q Consensus 324 ~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~g-------v~~~dG~~~~~~D~VI~aTG~~~~~~l~~~~~~~~l~~~~~~ 395 (522)
.+.++..+|+++.+. +.++..+. +...++.. +++|.+++++|.+++..+.+.... ...
T Consensus 185 -------~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~g~~p~~~l~~~~~~------~~~ 250 (415)
T COG0446 185 -------AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEE-IKADLVIIGPGERPNVVLANDALP------GLA 250 (415)
T ss_pred -------HHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcE-EEeeEEEEeecccccHHHHhhCcc------cee
Confidence 112222234454443 45554432 57778888 999999999999998544332100 011
Q ss_pred CCCCCcccceeecCCCCCceEEEcccCC-----------cchhhhHHHHHHHHHHHHcCC
Q 009917 396 SPTEKLPLYREIIHPQIPQLAIIGFSES-----------ISNLYTSEMRCRWLAELLDGA 444 (522)
Q Consensus 396 ~~~~~~~ly~~~~~~~~pnl~~iG~~~~-----------~~~~~~~e~qa~~ia~~l~g~ 444 (522)
...+...+...+.....+++|.+|.... ...+..+..|++.++..+.+.
T Consensus 251 ~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 251 LAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred ccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 2222344444443335899999994221 112356788888888888764
No 90
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.41 E-value=3.5e-12 Score=111.91 Aligned_cols=127 Identities=25% Similarity=0.390 Sum_probs=95.3
Q ss_pred EEECCChhHHHHHHHHHhc-----CCceEEEecCCCc-ccccccc-ccceeecCCccceeecC-CC---CC---------
Q 009917 7 AIVGAGVSGLLACKYLLLK-----GFHPIVFEARSDI-GGAWIKT-VETTMLQTPKQLYQFSD-YP---WP--------- 66 (522)
Q Consensus 7 vIIGaG~aGl~~a~~l~~~-----g~~v~i~e~~~~~-Gg~w~~~-~~~~~~~~~~~~~~~~~-~~---~~--------- 66 (522)
+|||+|++|++++.+|.+. ..+|+|||+++.- |+.|... .+...+|+|...|+... .| |.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999987 4589999996652 4678774 78889999988776532 22 00
Q ss_pred ---CCCCCCCCChhHHHHHHHHHHHhcC--Cccc--e-EeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEE
Q 009917 67 ---DSVTTDFPDHNQVLDYIQSYASHFD--LRKH--I-KFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAV 138 (522)
Q Consensus 67 ---~~~~~~~~~~~~~~~yl~~~~~~~~--l~~~--i-~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 138 (522)
......|+++..+.+||+++.+.+- +... + ..+.+|++|+..+ +.|.|.+
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~----------------------~~~~v~~ 138 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD----------------------DGYRVVT 138 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC----------------------CcEEEEE
Confidence 0114679999999999998877752 1112 2 3456888888865 4588888
Q ss_pred ecCCCCceeEEEeCEEEEeecc
Q 009917 139 EDAKNHSTEVHQVDFVILCVGR 160 (522)
Q Consensus 139 ~~~~~g~~~~~~~d~lvvAtG~ 160 (522)
.++ ..+.||.||+|||+
T Consensus 139 ~~g-----~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 139 ADG-----QSIRADAVVLATGH 155 (156)
T ss_pred CCC-----CEEEeCEEEECCCC
Confidence 877 57899999999995
No 91
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=125.28 Aligned_cols=137 Identities=20% Similarity=0.369 Sum_probs=99.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc--------ccccc----cccceeecCC---ccce----eec
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--------GAWIK----TVETTMLQTP---KQLY----QFS 61 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G--------g~w~~----~~~~~~~~~~---~~~~----~~~ 61 (522)
|+.++|+|||||||||.||..+.+.|.+|+|||+.+.+| |.|+. .+.....+.| ..++ .|.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 788999999999999999999999999999999999875 34443 1222233334 1111 111
Q ss_pred C-----------CCCC-CCCCCCCCC---hhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCC
Q 009917 62 D-----------YPWP-DSVTTDFPD---HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (522)
Q Consensus 62 ~-----------~~~~-~~~~~~~~~---~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 126 (522)
. .++. ......||. ...+.+-|..-+++.++ .++.+++|.+++.++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~~----------------- 141 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKDD----------------- 141 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEecC-----------------
Confidence 1 0110 011355664 56788888888899999 999999999999874
Q ss_pred CCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCCCCCC
Q 009917 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNI 167 (522)
Q Consensus 127 ~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~ 167 (522)
..+.|++.++ +++.||.||+|||..| .|++
T Consensus 142 -----~~f~l~t~~g-----~~i~~d~lilAtGG~S-~P~l 171 (408)
T COG2081 142 -----SGFRLDTSSG-----ETVKCDSLILATGGKS-WPKL 171 (408)
T ss_pred -----ceEEEEcCCC-----CEEEccEEEEecCCcC-CCCC
Confidence 3588888876 5899999999999874 5543
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.29 E-value=9.7e-11 Score=114.54 Aligned_cols=40 Identities=33% Similarity=0.552 Sum_probs=37.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~ 43 (522)
++++|||||+|||+||..|++.|++|.++|+++.+||.-.
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 6899999999999999999999999999999999999744
No 93
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.24 E-value=3.1e-11 Score=121.75 Aligned_cols=134 Identities=28% Similarity=0.413 Sum_probs=75.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc--------cccccc-----ccceeec---CCccce----eec--
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--------GAWIKT-----VETTMLQ---TPKQLY----QFS-- 61 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G--------g~w~~~-----~~~~~~~---~~~~~~----~~~-- 61 (522)
+||+|||||+|||.||..+++.|.+|+|+|+++.+| |.|+.. ....... .+..+. .|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 589999999999999999999999999999999875 333320 0111111 010000 000
Q ss_pred -------C--CCCC-CCCCCCCC---ChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCC
Q 009917 62 -------D--YPWP-DSVTTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (522)
Q Consensus 62 -------~--~~~~-~~~~~~~~---~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (522)
. .+.. +.....|| ...++.+-|...+++.++ .++++++|.++...+
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~~------------------- 139 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKKE------------------- 139 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEET-------------------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeecC-------------------
Confidence 0 0110 00123344 356777888888899998 999999999999865
Q ss_pred CCCCcEEEEEecCCCCceeEEEeCEEEEeecccCCCCC
Q 009917 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPN 166 (522)
Q Consensus 129 ~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~ 166 (522)
++.+.|.+++. .++.+|.||+|||..| .|.
T Consensus 140 --~~~f~v~~~~~-----~~~~a~~vILAtGG~S-~p~ 169 (409)
T PF03486_consen 140 --DGVFGVKTKNG-----GEYEADAVILATGGKS-YPK 169 (409)
T ss_dssp --TEEEEEEETTT-----EEEEESEEEE----SS-SGG
T ss_pred --CceeEeeccCc-----ccccCCEEEEecCCCC-ccc
Confidence 24488888443 6899999999999873 443
No 94
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.22 E-value=5.5e-12 Score=116.06 Aligned_cols=153 Identities=24% Similarity=0.355 Sum_probs=86.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHH--H-
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVL--D- 81 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 81 (522)
||+|||||+||+++|..|++.+.+++|+|+.+..+.. ..+.+...+. ........+. +
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~~~~~~~~~------------------~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SGCIPSPLLV------------------EIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HSHHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-cccccccccc------------------cccccccccccccc
Confidence 6999999999999999999999999999887643321 0000000000 0000000111 0
Q ss_pred -HHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecc
Q 009917 82 -YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (522)
Q Consensus 82 -yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~ 160 (522)
.+.+..+..++ .+.++++|.+++..... + ......+..... +...++.||+||+|||.
T Consensus 62 ~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~----------------~-~~~~~~~~~~~~--~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 62 FKLVDQLKNRGV--EIRLNAKVVSIDPESKR----------------V-VCPAVTIQVVET--GDGREIKYDYLVIATGS 120 (201)
T ss_dssp GHHHHHHHHHTH--EEEHHHTEEEEEESTTE----------------E-EETCEEEEEEET--TTEEEEEEEEEEEESTE
T ss_pred cccccccccceE--EEeeccccccccccccc----------------c-ccCcccceeecc--CCceEecCCeeeecCcc
Confidence 12222244555 67778999999876500 0 001123322221 34478999999999994
Q ss_pred cCCCCCCCCCCCCCCCCc--cCceEEeeccCCCCchHhhhhccCCCEEEEEc
Q 009917 161 FSDVPNIPEFPPKKGPEA--FHGKVIHSMDYSDMDYEAAANLVKGKRVTVVG 210 (522)
Q Consensus 161 ~s~~p~~P~~p~~~g~~~--f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG 210 (522)
.|+.|.+| |.+. +...+.++..+.. .....++|+|||
T Consensus 121 ---~~~~~~i~---g~~~~~~~~~~~~~~~~~~-------~~~~~~~v~VvG 159 (201)
T PF07992_consen 121 ---RPRTPNIP---GEEVAYFLRGVDDAQRFLE-------LLESPKRVAVVG 159 (201)
T ss_dssp ---EEEEESST---TTTTECBTTSEEHHHHHHT-------HSSTTSEEEEES
T ss_pred ---ccceeecC---CCccccccccccccccccc-------cccccccccccc
Confidence 57777777 6521 2122344443332 223456999999
No 95
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.20 E-value=1.7e-10 Score=110.59 Aligned_cols=250 Identities=15% Similarity=0.237 Sum_probs=140.5
Q ss_pred CcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCcc--------ccccccccceeecCCccceeecCCCCCCCC----
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG--------GAWIKTVETTMLQTPKQLYQFSDYPWPDSV---- 69 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~G--------g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 69 (522)
...+|||+|.+..+++...... +.++.+|...+..- ..|.+.-|+ +...+.|. +|.-..
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn-----~~k~lrfk--qwsGkeRsif 251 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPN-----SAKKLRFK--QWSGKERSIF 251 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCC-----hhhheeec--ccCCccceeE
Confidence 3579999999999988887764 56788776554421 123321111 11111221 111000
Q ss_pred ---CCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCce
Q 009917 70 ---TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (522)
Q Consensus 70 ---~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~ 146 (522)
...|.+.+++-. +.+=|+ -+..+.+|+.|+... ..|+++|+
T Consensus 252 fepd~FfvspeDLp~-----~~nGGv--Avl~G~kvvkid~~d------------------------~~V~LnDG----- 295 (659)
T KOG1346|consen 252 FEPDGFFVSPEDLPK-----AVNGGV--AVLRGRKVVKIDEED------------------------KKVILNDG----- 295 (659)
T ss_pred ecCCcceeChhHCcc-----cccCce--EEEeccceEEeeccc------------------------CeEEecCC-----
Confidence 122333222211 112233 344566777776543 56889998
Q ss_pred eEEEeCEEEEeecccCCCCCC-CCCCCCCCCCccCc--eEEee-ccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHH
Q 009917 147 EVHQVDFVILCVGRFSDVPNI-PEFPPKKGPEAFHG--KVIHS-MDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMEC 222 (522)
Q Consensus 147 ~~~~~d~lvvAtG~~s~~p~~-P~~p~~~g~~~f~g--~~~hs-~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l 222 (522)
.++.||.++||||.. |+. +-|... +.+ .+. .++|. .+|+.+. .-...-+.|.|||+|..|.|+|..|
T Consensus 296 ~~I~YdkcLIATG~~---Pk~l~~~~~A-~~e-vk~kit~fr~p~DF~rle----k~~aek~siTIiGnGflgSELacsl 366 (659)
T KOG1346|consen 296 TTIGYDKCLIATGVR---PKKLQVFEEA-SEE-VKQKITYFRYPADFKRLE----KGLAEKQSITIIGNGFLGSELACSL 366 (659)
T ss_pred cEeehhheeeecCcC---cccchhhhhc-CHH-hhhheeEEecchHHHHHH----HhhhhcceEEEEcCcchhhhHHHHH
Confidence 789999999999954 443 323211 111 111 23332 2343322 1112337899999999999999999
Q ss_pred hhhcC-CCCceEEEEcccceeecCCCCCCCchhhHHHHHHHHHhhcCCChhHHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q 009917 223 TTANG-LENPCTVLYRTEHWNIPDYFPWGFPLAYLYLNRFAELLVHKPGEGFLLSLLATMLSPLRWAISKFVEADIKKKH 301 (522)
Q Consensus 223 ~~~~~-~~~~Vt~v~r~~~~~~p~~~~~g~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (522)
.+... ...+|+.+..... |+..++.+ |+
T Consensus 367 ~rk~r~~g~eV~QvF~Ek~-----------nm~kiLPe------------------------------------yl---- 395 (659)
T KOG1346|consen 367 KRKYRNEGVEVHQVFEEKY-----------NMEKILPE------------------------------------YL---- 395 (659)
T ss_pred HHhhhccCcEEEEeecccC-----------ChhhhhHH------------------------------------HH----
Confidence 97643 2234555443211 11111100 00
Q ss_pred cccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEec--Cc--EEEcCCCceecccEEEEecCCCC
Q 009917 302 RLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCE--DG--IVVDGQTTPLKTDLVILATGFKG 376 (522)
Q Consensus 302 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~--~g--v~~~dG~~~~~~D~VI~aTG~~~ 376 (522)
+.--.+.+++++|.|+.+. |.++.. .. +.|+||.+ +..|+||.|+|-.|
T Consensus 396 -------------------------s~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~-l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 396 -------------------------SQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSE-LRTDLVVVAVGEEP 449 (659)
T ss_pred -------------------------HHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCe-eeeeeEEEEecCCC
Confidence 0111356778888888776 555532 33 56789999 99999999999999
Q ss_pred Cccccc
Q 009917 377 DVKLKN 382 (522)
Q Consensus 377 ~~~l~~ 382 (522)
|.+|..
T Consensus 450 N~ela~ 455 (659)
T KOG1346|consen 450 NSELAE 455 (659)
T ss_pred chhhcc
Confidence 987654
No 96
>PRK06847 hypothetical protein; Provisional
Probab=99.15 E-value=7.7e-10 Score=112.28 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=86.5
Q ss_pred CC-CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc----cc---------------c------cccceeecCC
Q 009917 1 ME-KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA----WI---------------K------TVETTMLQTP 54 (522)
Q Consensus 1 m~-~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~----w~---------------~------~~~~~~~~~~ 54 (522)
|. .++|+|||||++|+++|..|.+.|++|+|+|+++.+... .. . ......+..+
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 54 368999999999999999999999999999998753210 00 0 0000011111
Q ss_pred ccceeecCCCCCCCC-----CCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCC
Q 009917 55 KQLYQFSDYPWPDSV-----TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (522)
Q Consensus 55 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (522)
.... +..++.+... ......+.++.+++.+.+.+.++ .+.++++|++++..+
T Consensus 81 ~g~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~-------------------- 137 (375)
T PRK06847 81 DGTL-LAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQDD-------------------- 137 (375)
T ss_pred CCCE-EEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEcC--------------------
Confidence 1000 0011111000 11233567888999998888887 899999999998754
Q ss_pred CCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 130 ~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.++ +++.+|.||+|+|..|
T Consensus 138 --~~~~v~~~~g-----~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 138 --DGVTVTFSDG-----TTGRYDLVVGADGLYS 163 (375)
T ss_pred --CEEEEEEcCC-----CEEEcCEEEECcCCCc
Confidence 3477777665 4789999999999875
No 97
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.14 E-value=1.4e-09 Score=98.39 Aligned_cols=164 Identities=19% Similarity=0.295 Sum_probs=100.4
Q ss_pred cEEEECCChhHHHHHHHHHhc--CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 5 QIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
+.+|||||.||.++|.+|+.. ..+++++..++-+-. ...-..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks--------------------------------vtn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS--------------------------------VTNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH--------------------------------HhhHHHHHHH
Confidence 368999999999999999984 457888887654310 0112445555
Q ss_pred HHHHHHhcCCccc------eEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEE
Q 009917 83 IQSYASHFDLRKH------IKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (522)
Q Consensus 83 l~~~~~~~~l~~~------i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvv 156 (522)
+++| ++++. -.|.+-+.++.... +.+..+.++++ .++.|++|++
T Consensus 49 lekf----dv~eq~~~elg~~f~~~~~~v~~~~---------------------s~ehci~t~~g-----~~~ky~kKOG 98 (334)
T KOG2755|consen 49 LEKF----DVKEQNCHELGPDFRRFLNDVVTWD---------------------SSEHCIHTQNG-----EKLKYFKLCL 98 (334)
T ss_pred HHhc----CccccchhhhcccHHHHHHhhhhhc---------------------cccceEEecCC-----ceeeEEEEEE
Confidence 5544 33211 11211122222111 12356778887 6899999999
Q ss_pred eecccCCCCCCCCCCCCCCCCccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEE
Q 009917 157 CVGRFSDVPNIPEFPPKKGPEAFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLY 236 (522)
Q Consensus 157 AtG~~s~~p~~P~~p~~~g~~~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~ 236 (522)
||| ..|+... . |.+ ..++--.+-+... .......+.|+|+|+|.|-+|+|.+.++.... |+|..
T Consensus 99 ~tg---~kPklq~-E---~~n---~~Iv~irDtDsaQ-llq~kl~kaK~VlilgnGgia~El~yElk~~n-----v~w~i 162 (334)
T KOG2755|consen 99 CTG---YKPKLQV-E---GIN---PKIVGIRDTDSAQ-LLQCKLVKAKIVLILGNGGIAMELTYELKILN-----VTWKI 162 (334)
T ss_pred ecC---CCcceee-c---CCC---ceEEEEecCcHHH-HHHHHHhhcceEEEEecCchhHHHHHHhhcce-----eEEEe
Confidence 999 4565531 1 212 2344433333211 01124568899999999999999999998643 88988
Q ss_pred cccceeecCCC
Q 009917 237 RTEHWNIPDYF 247 (522)
Q Consensus 237 r~~~~~~p~~~ 247 (522)
..+ |+...+.
T Consensus 163 kd~-~IsaTFf 172 (334)
T KOG2755|consen 163 KDE-GISATFF 172 (334)
T ss_pred cch-hhhhccc
Confidence 755 4666554
No 98
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.13 E-value=3.3e-10 Score=107.59 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=86.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc-cccc--cccceeecCCc-cceeecCCCCCCCCCC-CCCChh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIK--TVETTMLQTPK-QLYQFSDYPWPDSVTT-DFPDHN 77 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg-~w~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 77 (522)
..||+|||||+||+++|..|.+.|++|+|+|++..+|| .|.. .++...++.+. ..+.-...++...... ......
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 47999999999999999999999999999999988876 3432 22222221110 0111111122111011 123456
Q ss_pred HHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEe------cCCCCceeEEEe
Q 009917 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE------DAKNHSTEVHQV 151 (522)
Q Consensus 78 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~g~~~~~~~ 151 (522)
++...|...+.+.++ .+.++++|+++...+ + ....-|.+. .+......++.+
T Consensus 105 ~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~~~--~------------------g~V~Gvv~~~~~v~~~g~~~~~~~i~A 162 (257)
T PRK04176 105 EAAAKLAAAAIDAGA--KIFNGVSVEDVILRE--D------------------PRVAGVVINWTPVEMAGLHVDPLTIEA 162 (257)
T ss_pred HHHHHHHHHHHHcCC--EEEcCceeceeeEeC--C------------------CcEEEEEEccccccccCCCCCcEEEEc
Confidence 777888888888888 899999999987654 0 011222221 111112367999
Q ss_pred CEEEEeecccC
Q 009917 152 DFVILCVGRFS 162 (522)
Q Consensus 152 d~lvvAtG~~s 162 (522)
+.||+|||+.+
T Consensus 163 k~VI~ATG~~a 173 (257)
T PRK04176 163 KAVVDATGHDA 173 (257)
T ss_pred CEEEEEeCCCc
Confidence 99999999864
No 99
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.13 E-value=6.4e-10 Score=108.74 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=85.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-----------cccceee-cCCccceeec------CCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------TVETTML-QTPKQLYQFS------DYPW 65 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-----------~~~~~~~-~~~~~~~~~~------~~~~ 65 (522)
+||+|||||++|+++|..|++.|++|+|+|+.+..+..+.. ..++... ........+. ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 48999999999999999999999999999999876543321 0001000 0000000000 1111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCc
Q 009917 66 PDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHS 145 (522)
Q Consensus 66 ~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~ 145 (522)
+.. .....++.++.+.+.+.+.+.++ .+.++++|+++...+ +.+.+.+.++
T Consensus 81 ~~~-~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~~----------------------~~~~~~~~~~---- 131 (295)
T TIGR02032 81 ETE-LAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIHD----------------------DRVVVIVRGG---- 131 (295)
T ss_pred CCC-cEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEeC----------------------CEEEEEEcCc----
Confidence 110 11224677888899998888887 899999999998764 2345555442
Q ss_pred eeEEEeCEEEEeecccC
Q 009917 146 TEVHQVDFVILCVGRFS 162 (522)
Q Consensus 146 ~~~~~~d~lvvAtG~~s 162 (522)
..++++|+||+|+|..+
T Consensus 132 ~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 132 EGTVTAKIVIGADGSRS 148 (295)
T ss_pred cEEEEeCEEEECCCcch
Confidence 15789999999999874
No 100
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.13 E-value=2e-10 Score=104.52 Aligned_cols=123 Identities=25% Similarity=0.409 Sum_probs=83.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-cccceeecCCc----------------------------
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPK---------------------------- 55 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-~~~~~~~~~~~---------------------------- 55 (522)
+|+|||+|++|++||..|++.|.+|+||||+..+||.-.. +.++...+.-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 7999999999999999999999999999999999997665 44444433222
Q ss_pred cceeecCC---CCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 009917 56 QLYQFSDY---PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (522)
Q Consensus 56 ~~~~~~~~---~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
.++.|.+- |.++. ..|....-|..--+..+. ++ +++++++|+.+.+.+ +
T Consensus 83 ~~~~~~~~~~~~~~d~--~pyvg~pgmsalak~LAt--dL--~V~~~~rVt~v~~~~----------------------~ 134 (331)
T COG3380 83 AVWTFTGDGSPPRGDE--DPYVGEPGMSALAKFLAT--DL--TVVLETRVTEVARTD----------------------N 134 (331)
T ss_pred cccccccCCCCCCCCC--CccccCcchHHHHHHHhc--cc--hhhhhhhhhhheecC----------------------C
Confidence 23333322 11111 113332233322222222 44 789999999999864 5
Q ss_pred cEEEEEecCCCCceeEEEeCEEEEeec
Q 009917 133 KWTVAVEDAKNHSTEVHQVDFVILCVG 159 (522)
Q Consensus 133 ~~~v~~~~~~~g~~~~~~~d~lvvAtG 159 (522)
.|+++++++. ....+|.||+|.=
T Consensus 135 ~W~l~~~~g~----~~~~~d~vvla~P 157 (331)
T COG3380 135 DWTLHTDDGT----RHTQFDDVVLAIP 157 (331)
T ss_pred eeEEEecCCC----cccccceEEEecC
Confidence 6999997764 5689999999964
No 101
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.12 E-value=3.7e-10 Score=106.90 Aligned_cols=138 Identities=20% Similarity=0.247 Sum_probs=87.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc-ccccc--cccceeecCCcc-ceeecCCCCCCCCC-CCCCChh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG-GAWIK--TVETTMLQTPKQ-LYQFSDYPWPDSVT-TDFPDHN 77 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G-g~w~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 77 (522)
..||+|||||++||++|..|++.|++|+|+||+..+| |.|.. .++...++.+.. .+.-...++..... .......
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 4799999999999999999999999999999999886 45544 233332222211 11111222221101 1122456
Q ss_pred HHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEec------CCCCceeEEEe
Q 009917 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED------AKNHSTEVHQV 151 (522)
Q Consensus 78 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~g~~~~~~~ 151 (522)
++.+.|.+.+.+.++ .+.++++|.++...+ +. ....-|.++. +...+..++.+
T Consensus 101 el~~~L~~~a~e~GV--~I~~~t~V~dli~~~--~~-----------------~~V~GVv~~~~~v~~~g~~~d~~~i~A 159 (254)
T TIGR00292 101 EFISTLASKALQAGA--KIFNGTSVEDLITRD--DT-----------------VGVAGVVINWSAIELAGLHVDPLTQRS 159 (254)
T ss_pred HHHHHHHHHHHHcCC--EEECCcEEEEEEEeC--CC-----------------CceEEEEeCCccccccCCCCCCEEEEc
Confidence 788888888888887 899999999998754 00 0001122211 10112357999
Q ss_pred CEEEEeeccc
Q 009917 152 DFVILCVGRF 161 (522)
Q Consensus 152 d~lvvAtG~~ 161 (522)
+.||.|||+.
T Consensus 160 k~VVdATG~~ 169 (254)
T TIGR00292 160 RVVVDATGHD 169 (254)
T ss_pred CEEEEeecCC
Confidence 9999999975
No 102
>PRK06834 hypothetical protein; Provisional
Probab=99.11 E-value=9.4e-10 Score=114.78 Aligned_cols=132 Identities=21% Similarity=0.338 Sum_probs=86.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc---c----cccccc---------ccce-----eecCCc---c
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI---G----GAWIKT---------VETT-----MLQTPK---Q 56 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~---G----g~w~~~---------~~~~-----~~~~~~---~ 56 (522)
|...+|+||||||+|+++|..|.+.|++|+|+|+.+.. + +.+... ++.+ ...... .
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 77899999999999999999999999999999998642 1 111110 0000 000000 0
Q ss_pred ceeecCCCCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEE
Q 009917 57 LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (522)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (522)
.+.+...+.... .........+.+.|.+.++++++ .++++++|++++.++ +.+.|
T Consensus 81 ~~~~~~~~~~~~-~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~~----------------------~~v~v 135 (488)
T PRK06834 81 RLDISDFPTRHN-YGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQDD----------------------TGVDV 135 (488)
T ss_pred ecccccCCCCCC-ccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcC----------------------CeEEE
Confidence 011111111100 11123456777888888888887 899999999998764 34677
Q ss_pred EEecCCCCceeEEEeCEEEEeecccC
Q 009917 137 AVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 137 ~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
++.++ .++.+|+||.|.|..|
T Consensus 136 ~~~~g-----~~i~a~~vVgADG~~S 156 (488)
T PRK06834 136 ELSDG-----RTLRAQYLVGCDGGRS 156 (488)
T ss_pred EECCC-----CEEEeCEEEEecCCCC
Confidence 66543 4789999999999885
No 103
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.10 E-value=5.1e-10 Score=112.41 Aligned_cols=132 Identities=25% Similarity=0.290 Sum_probs=86.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc----ccc---------------c----ccc----ceeecCC--
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG----AWI---------------K----TVE----TTMLQTP-- 54 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg----~w~---------------~----~~~----~~~~~~~-- 54 (522)
++|+|||||++|+++|..|++.|++|+|||+++.... ... . ..+ .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 6899999999999999999999999999999875421 110 0 000 0000000
Q ss_pred ---------ccceeec-CCCCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCC
Q 009917 55 ---------KQLYQFS-DYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGN 124 (522)
Q Consensus 55 ---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 124 (522)
.....+. ..+.+ ......+.++.+.|.+.+++.++ .++++++|++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d~--------------- 141 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGP---YGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQDD--------------- 141 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSS---CEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEET---------------
T ss_pred CccceeeecccceeeeccccCC---cchhhhHHHHHHhhhhhhhhhhh--hheeeeecccccccc---------------
Confidence 0000000 00011 11223567888999999999887 899999999998765
Q ss_pred CCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 125 GQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+...+.+.+..+|+.+++++|.||.|.|..|
T Consensus 142 -------~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 142 -------DGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp -------TEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred -------cccccccccccCCceeEEEEeeeecccCccc
Confidence 3456677776667778899999999999885
No 104
>PRK08013 oxidoreductase; Provisional
Probab=99.10 E-value=1e-09 Score=112.30 Aligned_cols=133 Identities=15% Similarity=0.164 Sum_probs=84.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc---cc---------ccc---------cccceee--cCCccc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GA---------WIK---------TVETTML--QTPKQL 57 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G---g~---------w~~---------~~~~~~~--~~~~~~ 57 (522)
|+.+||+|||||++|+++|..|++.|++|+|+|+.+... |. +.. ..+.+.- ..+...
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 777899999999999999999999999999999987522 10 000 0001000 001111
Q ss_pred eeecC------CCCCCC-C-CC---CCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCC
Q 009917 58 YQFSD------YPWPDS-V-TT---DFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNG 125 (522)
Q Consensus 58 ~~~~~------~~~~~~-~-~~---~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 125 (522)
+.+.+ ..+... . .+ ....+..+.+.|.+-+... ++ .++++++|++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~---------------- 142 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI--TLLAPAELQQVAWGE---------------- 142 (400)
T ss_pred EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecC----------------
Confidence 11110 000000 0 11 1234566777777767665 56 788999999998754
Q ss_pred CCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 126 QPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 126 ~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+...|++.++ +++++|.||-|.|..|
T Consensus 143 ------~~v~v~~~~g-----~~i~a~lvVgADG~~S 168 (400)
T PRK08013 143 ------NEAFLTLKDG-----SMLTARLVVGADGANS 168 (400)
T ss_pred ------CeEEEEEcCC-----CEEEeeEEEEeCCCCc
Confidence 3367777665 5799999999999886
No 105
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.07 E-value=1.9e-09 Score=109.86 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=84.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-----cccceee-----cCCccceeecCCCCCCCCCCCC-
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----TVETTML-----QTPKQLYQFSDYPWPDSVTTDF- 73 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~- 73 (522)
||+|||||+||+++|..|.+.|++|+|+|+++.+|+.+.. ..+.+.+ +.-...+.+.+..........|
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 6999999999999999999999999999999888764322 1111111 0001111111100000001111
Q ss_pred -CChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeC
Q 009917 74 -PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVD 152 (522)
Q Consensus 74 -~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d 152 (522)
..+..+.+++.+.+.+.++ .+ +.++|+.+.... ++.|.|++.++ .++++|
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv--~~-~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~~~a~ 131 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGV--LW-LERKAIHAEADG---------------------VALSTVYCAGG-----QRIQAR 131 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCc--EE-EccEEEEEEecC---------------------CceeEEEeCCC-----CEEEeC
Confidence 4567888888888887776 45 466888887653 24588887665 579999
Q ss_pred EEEEeecccC
Q 009917 153 FVILCVGRFS 162 (522)
Q Consensus 153 ~lvvAtG~~s 162 (522)
.||.|+|..|
T Consensus 132 ~VI~A~G~~s 141 (388)
T TIGR01790 132 LVIDARGFGP 141 (388)
T ss_pred EEEECCCCch
Confidence 9999999763
No 106
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.07 E-value=1.4e-09 Score=110.91 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=82.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc------------------ccccc------ccceeecCCcc-
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG------------------AWIKT------VETTMLQTPKQ- 56 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg------------------~w~~~------~~~~~~~~~~~- 56 (522)
..+||+|||||++|+++|..|.+.|++|+|||+.+..+. .|... +....+..+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 346999999999999999999999999999999865321 11110 00111100100
Q ss_pred c-----eeecCCCCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 009917 57 L-----YQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (522)
Q Consensus 57 ~-----~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
. ..|..............+...+.+.+.+.+.+++. ..+++++|++++..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~--~~~~~~~v~~i~~~~---------------------- 141 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPN--ITRFGDEAESVRPRE---------------------- 141 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCC--cEEECCeeEEEEEcC----------------------
Confidence 0 01110000000001113456677777777776653 247899999998754
Q ss_pred CcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 132 ~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.|.|++.++ +++++|.||.|+|..|
T Consensus 142 ~~~~v~~~~g-----~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 142 DEVTVTLADG-----TTLSARLVVGADGRNS 167 (388)
T ss_pred CeEEEEECCC-----CEEEEeEEEEecCCCc
Confidence 4588887665 5799999999999875
No 107
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.06 E-value=3e-09 Score=108.35 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=84.3
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecC-CC---ccccccc---------------cccceeecCCccceeecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SD---IGGAWIK---------------TVETTMLQTPKQLYQFSDYP 64 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~-~~---~Gg~w~~---------------~~~~~~~~~~~~~~~~~~~~ 64 (522)
+||+||||||||+++|..|++.|++|+|+|+. +. .||.... .+.+..+..|...... ..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIK--VT 78 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceee--ec
Confidence 58999999999999999999999999999997 22 1221111 0111122222211000 11
Q ss_pred CCCCCCCCC---CChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecC
Q 009917 65 WPDSVTTDF---PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (522)
Q Consensus 65 ~~~~~~~~~---~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (522)
.+. ...| ..+..+.++|.+.+.+.+. .+.. ++|+++...+ +.+.|++.++
T Consensus 79 ~~~--~~~~~~~~~r~~fd~~L~~~a~~~G~--~v~~-~~v~~v~~~~----------------------~~~~v~~~~~ 131 (388)
T TIGR02023 79 IPS--EDGYVGMVRREVFDSYLRERAQKAGA--ELIH-GLFLKLERDR----------------------DGVTLTYRTP 131 (388)
T ss_pred cCC--CCCceEeeeHHHHHHHHHHHHHhCCC--EEEe-eEEEEEEEcC----------------------CeEEEEEEec
Confidence 111 1223 5778888999999888887 6654 4688887654 4577877652
Q ss_pred ---CCCceeEEEeCEEEEeecccC
Q 009917 142 ---KNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 142 ---~~g~~~~~~~d~lvvAtG~~s 162 (522)
.+++..++.+|.||.|+|..|
T Consensus 132 ~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 132 KKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred cccCCCcceEEEeCEEEECCCCCc
Confidence 123446799999999999875
No 108
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.06 E-value=1.8e-09 Score=110.22 Aligned_cols=132 Identities=15% Similarity=0.173 Sum_probs=83.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc----c-------cccc---------cccceee--cCCcc---
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG----G-------AWIK---------TVETTML--QTPKQ--- 56 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G----g-------~w~~---------~~~~~~~--~~~~~--- 56 (522)
+..||+|||||++|+++|..|.+.|++|+|+|+.+... + .+.. .++.+.- ..+..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 35799999999999999999999999999999976431 1 0000 0010000 00110
Q ss_pred --------ceeecCCCCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCC
Q 009917 57 --------LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (522)
Q Consensus 57 --------~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (522)
...|..................+.+.|.+.+++.++ .+.++++|++++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~~------------------- 143 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQDA------------------- 143 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEecC-------------------
Confidence 011111000000001112456677777777777787 889999999998754
Q ss_pred CCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 129 ~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.++ .++.+|.||.|+|..|
T Consensus 144 ---~~v~v~~~~g-----~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 144 ---DRVRLRLDDG-----RRLEAALAIAADGAAS 169 (392)
T ss_pred ---CeEEEEECCC-----CEEEeCEEEEecCCCc
Confidence 3477777654 4789999999999874
No 109
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.05 E-value=3.5e-09 Score=112.46 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=88.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-------------------------cccceeecCCc--
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-------------------------TVETTMLQTPK-- 55 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-------------------------~~~~~~~~~~~-- 55 (522)
.++|+|||||++|+++|..|.+.|++|+|||+.+.+...... ...+.....+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 579999999999999999999999999999999765422110 01111111111
Q ss_pred cceeecCCCCC--CCC-CCCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 009917 56 QLYQFSDYPWP--DSV-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (522)
Q Consensus 56 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
....+.. +.. ..+ ......+.++.++|.+.+.++ ++ .++++++|++++.++
T Consensus 90 ~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~---------------------- 144 (538)
T PRK06183 90 CLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDD---------------------- 144 (538)
T ss_pred EEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcC----------------------
Confidence 1111211 100 000 011224556777888777765 66 899999999998764
Q ss_pred CcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 132 ~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.++|++++. +|+.+++++|+||.|.|..|
T Consensus 145 ~~v~v~~~~~-~G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 145 DGVTVTLTDA-DGQRETVRARYVVGCDGANS 174 (538)
T ss_pred CeEEEEEEcC-CCCEEEEEEEEEEecCCCch
Confidence 3477877653 35557899999999999986
No 110
>PRK06184 hypothetical protein; Provisional
Probab=99.05 E-value=3.4e-09 Score=111.65 Aligned_cols=136 Identities=16% Similarity=0.166 Sum_probs=85.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc------cccc-------------------cccceeecCCc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG------AWIK-------------------TVETTMLQTPK 55 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg------~w~~-------------------~~~~~~~~~~~ 55 (522)
|+..+|+||||||+||++|..|.+.|++|+|||+.+.+.. .+.. .++......+.
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 7889999999999999999999999999999999875421 1110 01111110000
Q ss_pred cce-e--ecCC--CCCCC-C-CCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCC
Q 009917 56 QLY-Q--FSDY--PWPDS-V-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (522)
Q Consensus 56 ~~~-~--~~~~--~~~~~-~-~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (522)
... . +... +.+.. . .....++..+.+.|.+.+.+.++ .++++++|++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~------------------- 139 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDA------------------- 139 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcC-------------------
Confidence 000 0 0000 00000 0 01122345566777777777787 899999999998754
Q ss_pred CCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 129 ~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+++++.+.. ..+++++|+||.|+|..|
T Consensus 140 ---~~v~v~~~~~~--~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 140 ---DGVTARVAGPA--GEETVRARYLVGADGGRS 168 (502)
T ss_pred ---CcEEEEEEeCC--CeEEEEeCEEEECCCCch
Confidence 34667664322 125799999999999885
No 111
>PRK08244 hypothetical protein; Provisional
Probab=99.04 E-value=3.2e-09 Score=111.67 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=84.3
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc--c----cccc---cccceee-------cCCccceeecC----C
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--G----AWIK---TVETTML-------QTPKQLYQFSD----Y 63 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G--g----~w~~---~~~~~~~-------~~~~~~~~~~~----~ 63 (522)
++|+||||||+||++|..|.+.|++|+|+|+.+... + .+.. ....+.+ ..+.....+.. .
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 799999999999999999999999999999986531 1 0000 0000000 00000011111 1
Q ss_pred CCCCC-C---CCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEe
Q 009917 64 PWPDS-V---TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE 139 (522)
Q Consensus 64 ~~~~~-~---~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 139 (522)
.+... . .....+...+.+.|.+.+++.++ .++++++|++++..+ +...|++.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~~----------------------~~v~v~~~ 138 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQDG----------------------DGVEVVVR 138 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEcC----------------------CeEEEEEE
Confidence 11100 0 11123556778888888888887 799999999998754 34667666
Q ss_pred cCCCCceeEEEeCEEEEeecccC
Q 009917 140 DAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 140 ~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+ | .+++++|+||.|.|..|
T Consensus 139 ~~~-g-~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 139 GPD-G-LRTLTSSYVVGADGAGS 159 (493)
T ss_pred eCC-c-cEEEEeCEEEECCCCCh
Confidence 432 2 35789999999999875
No 112
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.03 E-value=2.9e-09 Score=108.59 Aligned_cols=133 Identities=20% Similarity=0.196 Sum_probs=89.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-----------ccccee--ecCC--ccceeecCC--
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----------TVETTM--LQTP--KQLYQFSDY-- 63 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-----------~~~~~~--~~~~--~~~~~~~~~-- 63 (522)
|+.+||+||||||||++||..|++.|++|+|+|+.+.+|..-.. ..+... +... ...+.+...
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~ 80 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKV 80 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence 56699999999999999999999999999999999887752111 011111 0000 000111100
Q ss_pred --CCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecC
Q 009917 64 --PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDA 141 (522)
Q Consensus 64 --~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 141 (522)
..+.. ......+..+-++|...+.+.|. .+..+++|..+..++ +.+.+.+..+
T Consensus 81 ~~~~~~~-~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~~----------------------~~~~~~~~~~ 135 (396)
T COG0644 81 AIEVPVG-EGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIRED----------------------DGVVVGVRAG 135 (396)
T ss_pred EEecCCC-ceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEeC----------------------CcEEEEEEcC
Confidence 00000 11122467778889999999998 899999999999875 3355555554
Q ss_pred CCCceeEEEeCEEEEeecccC
Q 009917 142 KNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 142 ~~g~~~~~~~d~lvvAtG~~s 162 (522)
+ .++.+++||.|+|..+
T Consensus 136 ~----~e~~a~~vI~AdG~~s 152 (396)
T COG0644 136 D----DEVRAKVVIDADGVNS 152 (396)
T ss_pred C----EEEEcCEEEECCCcch
Confidence 3 6899999999999764
No 113
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.03 E-value=2.6e-09 Score=109.93 Aligned_cols=134 Identities=21% Similarity=0.271 Sum_probs=81.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc-----cccc---cc---c------cccee-ecCCcc--------
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-----GGAW---IK---T------VETTM-LQTPKQ-------- 56 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~-----Gg~w---~~---~------~~~~~-~~~~~~-------- 56 (522)
.+||+|||||++|+++|..|++.|++|+|+|+++.. |... .. . .+.+. ...+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 479999999999999999999999999999998754 2111 10 0 00000 000111
Q ss_pred ---ceeecCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 009917 57 ---LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (522)
Q Consensus 57 ---~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
...|...............+..+.+.|.+.+... ++ .++++++|++++.++ +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~v~~~~----------------------~ 153 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI--TWLCPAEVVSVEYQQ----------------------D 153 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecC----------------------C
Confidence 1111111111000001122345666666666655 45 688899999997654 3
Q ss_pred cEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 133 ~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.+.|++.++ +...++++|.||.|.|..|
T Consensus 154 ~~~v~~~~~--~~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 154 AATVTLEIE--GKQQTLQSKLVVAADGARS 181 (415)
T ss_pred eeEEEEccC--CcceEEeeeEEEEeCCCCc
Confidence 477777653 3335799999999999885
No 114
>PRK09126 hypothetical protein; Provisional
Probab=99.01 E-value=4e-09 Score=107.67 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=80.3
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc--------ccc---ccc---c------ccceee--cCCccc-
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI--------GGA---WIK---T------VETTML--QTPKQL- 57 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~--------Gg~---w~~---~------~~~~~~--~~~~~~- 57 (522)
|.+.+|+|||||++|+++|..|++.|++|+|+|+.+.. |.. +.. . ++.+.. ..+...
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA 80 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence 66799999999999999999999999999999998642 211 111 0 000000 001000
Q ss_pred ----------eeecCCCCCCCCCCCCCChhHHHHHHHHHH-HhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCC
Q 009917 58 ----------YQFSDYPWPDSVTTDFPDHNQVLDYIQSYA-SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (522)
Q Consensus 58 ----------~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~-~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 126 (522)
+.|..............+...+.+.+.+.+ +..++ .++++++|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~~----------------- 141 (392)
T PRK09126 81 KVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTDD----------------- 141 (392)
T ss_pred EEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEcC-----------------
Confidence 111110000000001123344554444443 33466 799999999998654
Q ss_pred CCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 127 ~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.++ +++.+|.||.|.|..|
T Consensus 142 -----~~~~v~~~~g-----~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 142 -----DGAQVTLANG-----RRLTARLLVAADSRFS 167 (392)
T ss_pred -----CeEEEEEcCC-----CEEEeCEEEEeCCCCc
Confidence 3477777665 4799999999999875
No 115
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.01 E-value=3.8e-09 Score=108.65 Aligned_cols=131 Identities=19% Similarity=0.190 Sum_probs=83.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc------cc-c----cccceeecCCc------cceee-----
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA------WI-K----TVETTMLQTPK------QLYQF----- 60 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~------w~-~----~~~~~~~~~~~------~~~~~----- 60 (522)
++||+||||||||+++|..|++.|++|+|+||.+.+|.. .. . ..|......|- ..+.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 489999999999999999999999999999998765431 11 1 12211111110 00111
Q ss_pred ------cCCCCCCCCCCCC-CChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 009917 61 ------SDYPWPDSVTTDF-PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (522)
Q Consensus 61 ------~~~~~~~~~~~~~-~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
............| ..+.++.++|.+.+++.++ .+..+++|+++...+ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------g~ 140 (428)
T PRK10157 85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQRD----------------------GK 140 (428)
T ss_pred ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEeC----------------------CE
Confidence 1000000001112 3567778889888988888 888999999987653 22
Q ss_pred EEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 134 ~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+...++ .++.+|.||+|+|..+
T Consensus 141 v~~v~~~g-----~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 141 VVGVEADG-----DVIEAKTVILADGVNS 164 (428)
T ss_pred EEEEEcCC-----cEEECCEEEEEeCCCH
Confidence 33322232 4689999999999763
No 116
>PLN02463 lycopene beta cyclase
Probab=99.01 E-value=5.8e-09 Score=106.93 Aligned_cols=130 Identities=16% Similarity=0.166 Sum_probs=83.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc-----cccccccccceee------cCCccceeecCC-CCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-----GGAWIKTVETTML------QTPKQLYQFSDY-PWPDSVT 70 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~-----Gg~w~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~ 70 (522)
.+||+|||||+||+++|..|.+.|++|+|+|+++.. .|.|......+.+ ..+.....+.+. .......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~ 107 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP 107 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence 469999999999999999999999999999997532 3444421111100 111111111110 0000000
Q ss_pred CCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEE
Q 009917 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (522)
Q Consensus 71 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~ 150 (522)
-....+.++.+++.+.+...++ ++. .++|++++..+ +.+.|+++++ .++.
T Consensus 108 y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~~----------------------~~~~V~~~dG-----~~i~ 157 (447)
T PLN02463 108 YGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHEE----------------------SKSLVVCDDG-----VKIQ 157 (447)
T ss_pred ceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEcC----------------------CeEEEEECCC-----CEEE
Confidence 1123677888888888877776 453 57899988754 4477888775 5799
Q ss_pred eCEEEEeecccC
Q 009917 151 VDFVILCVGRFS 162 (522)
Q Consensus 151 ~d~lvvAtG~~s 162 (522)
+|.||.|+|..+
T Consensus 158 A~lVI~AdG~~s 169 (447)
T PLN02463 158 ASLVLDATGFSR 169 (447)
T ss_pred cCEEEECcCCCc
Confidence 999999999864
No 117
>PRK06753 hypothetical protein; Provisional
Probab=99.00 E-value=3.4e-09 Score=107.45 Aligned_cols=127 Identities=27% Similarity=0.299 Sum_probs=79.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccc------c-----c--------------ccceeecCCccce
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI------K-----T--------------VETTMLQTPKQLY 58 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~------~-----~--------------~~~~~~~~~~~~~ 58 (522)
++|+|||||++|+++|..|++.|++|+|+|+++.+..... . . .+...+..+...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~- 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT- 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-
Confidence 3799999999999999999999999999999876431100 0 0 001111111000
Q ss_pred eecCCCCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEE
Q 009917 59 QFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAV 138 (522)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 138 (522)
.+...++.......-.++..+.+.|.+.++. . .++++++|++++..+ +.+.|++
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~----------------------~~v~v~~ 133 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENET----------------------DKVTIHF 133 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecC----------------------CcEEEEE
Confidence 0011111110011123556666777665542 2 689999999998653 4578887
Q ss_pred ecCCCCceeEEEeCEEEEeecccC
Q 009917 139 EDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 139 ~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.++ .++.+|.||.|.|..|
T Consensus 134 ~~g-----~~~~~~~vigadG~~S 152 (373)
T PRK06753 134 ADG-----ESEAFDLCIGADGIHS 152 (373)
T ss_pred CCC-----CEEecCEEEECCCcch
Confidence 665 5689999999999875
No 118
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.98 E-value=3.2e-09 Score=93.97 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=85.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc-cccc--cccceeecCCccce-eecCCCCCCCCCCCCC-ChhH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQLY-QFSDYPWPDSVTTDFP-DHNQ 78 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg-~w~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 78 (522)
.||+|+|||||||+||+.|++.|++|+||||+-.+|| .|.- .++...++.|.... .=-..|+.+.....|. ...+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 6999999999999999999999999999999988865 6765 66776666665432 1111122211111221 3445
Q ss_pred HHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEee
Q 009917 79 VLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCV 158 (522)
Q Consensus 79 ~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAt 158 (522)
+..-+..-+-+.+. +|.-.+.|+++-..+ +...++.. -.|+-....+--=.--++++++||-||
T Consensus 111 ~~skl~~~a~~aGa--ki~n~~~veDvi~r~--~~rVaGvV------------vNWt~V~~~~lhvDPl~i~a~~VvDaT 174 (262)
T COG1635 111 FASKLAARALDAGA--KIFNGVSVEDVIVRD--DPRVAGVV------------VNWTPVQMAGLHVDPLTIRAKAVVDAT 174 (262)
T ss_pred HHHHHHHHHHhcCc--eeeecceEEEEEEec--CCceEEEE------------EecchhhhcccccCcceeeEEEEEeCC
Confidence 55555555555565 777778888876654 00000000 013322211100011478999999999
Q ss_pred ccc
Q 009917 159 GRF 161 (522)
Q Consensus 159 G~~ 161 (522)
|+-
T Consensus 175 GHd 177 (262)
T COG1635 175 GHD 177 (262)
T ss_pred CCc
Confidence 974
No 119
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.96 E-value=1.2e-08 Score=103.95 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=84.2
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccccc-------------------ccceeecCCccce-eecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKT-------------------VETTMLQTPKQLY-QFSDY 63 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~-------------------~~~~~~~~~~~~~-~~~~~ 63 (522)
+||+||||||+|+++|..|++.|++|+|+|+....+..|... ..+..+..|.... .+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~- 79 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGR- 79 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEecc-
Confidence 489999999999999999999999999999986543322210 1111222222110 1110
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCC-
Q 009917 64 PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK- 142 (522)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 142 (522)
..+....-....+..+.++|.+.+.+.|. .+..+ ++++++.... .++.+.|++...+
T Consensus 80 ~~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~-~~~~i~~~~~-------------------~~~~~~v~~~~~~~ 137 (398)
T TIGR02028 80 TLKEHEYIGMLRREVLDSFLRRRAADAGA--TLING-LVTKLSLPAD-------------------ADDPYTLHYISSDS 137 (398)
T ss_pred CCCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcc-eEEEEEeccC-------------------CCceEEEEEeeccc
Confidence 11110001125778888899999998887 67555 4767654320 1244777654321
Q ss_pred ---CCceeEEEeCEEEEeecccC
Q 009917 143 ---NHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 143 ---~g~~~~~~~d~lvvAtG~~s 162 (522)
+|+..++++|.||.|+|..|
T Consensus 138 ~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 138 GGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred cccCCCccEEEeCEEEECCCcch
Confidence 13446799999999999875
No 120
>PRK07236 hypothetical protein; Provisional
Probab=98.96 E-value=4.1e-09 Score=107.27 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=77.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc----ccc---ccc---c------ccceeecCCccceeecC--
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GGA---WIK---T------VETTMLQTPKQLYQFSD-- 62 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~----Gg~---w~~---~------~~~~~~~~~~~~~~~~~-- 62 (522)
|+.++|+|||||++||++|..|.+.|++|+|||+.+.. |+. +.. . .+......+.....+.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 56789999999999999999999999999999998632 211 110 0 00000011111111111
Q ss_pred -CCCCCCC-CCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEec
Q 009917 63 -YPWPDSV-TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (522)
Q Consensus 63 -~~~~~~~-~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (522)
....... .........+.+.|. +.+. ...++++++|++++..+ +.++|++.+
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~---~~~~-~~~i~~~~~v~~i~~~~----------------------~~v~v~~~~ 137 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALR---AAFP-AERYHLGETLVGFEQDG----------------------DRVTARFAD 137 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHH---HhCC-CcEEEcCCEEEEEEecC----------------------CeEEEEECC
Confidence 0000000 001123333333333 3332 12589999999998754 347788877
Q ss_pred CCCCceeEEEeCEEEEeecccC
Q 009917 141 AKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 141 ~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+ +++.+|.||.|.|..|
T Consensus 138 g-----~~~~ad~vIgADG~~S 154 (386)
T PRK07236 138 G-----RRETADLLVGADGGRS 154 (386)
T ss_pred C-----CEEEeCEEEECCCCCc
Confidence 6 5789999999999885
No 121
>PRK06126 hypothetical protein; Provisional
Probab=98.95 E-value=1.5e-08 Score=107.95 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=86.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc--c----cc---cccce-----------eecCCc-------
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--W----IK---TVETT-----------MLQTPK------- 55 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~--w----~~---~~~~~-----------~~~~~~------- 55 (522)
.++|+|||||++||++|..|.+.|++|+|||+.+.+... . .. .+..+ ....+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 479999999999999999999999999999998643210 0 00 00000 000000
Q ss_pred ----cceeecCCCC--------------CCCCCCCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccc
Q 009917 56 ----QLYQFSDYPW--------------PDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEK 116 (522)
Q Consensus 56 ----~~~~~~~~~~--------------~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~ 116 (522)
.+..+..... .........+...+.+.|.+.+.+. ++ .++++++|++++.++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~------- 157 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQDA------- 157 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEECC-------
Confidence 0001100000 0000011234556777788777665 56 899999999998764
Q ss_pred cccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 117 SWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+..++++.+..+|+..++.+|+||.|+|..|
T Consensus 158 ---------------~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 158 ---------------DGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred ---------------CeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 3466777665556667899999999999885
No 122
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.95 E-value=4.7e-09 Score=107.34 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=81.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc------ccc---------ccccee-ecCCccceeecC----
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA------WIK---------TVETTM-LQTPKQLYQFSD---- 62 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~------w~~---------~~~~~~-~~~~~~~~~~~~---- 62 (522)
..+|+|||||++|+++|..|.+.|++|+|||+.+.++.. +.. ..+.+. ...+...+.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 479999999999999999999999999999998765321 110 000000 000011111110
Q ss_pred -----CCCCCC----C-CC-CCCChhHHHHHHHHHHHhcC-CccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCC
Q 009917 63 -----YPWPDS----V-TT-DFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (522)
Q Consensus 63 -----~~~~~~----~-~~-~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (522)
.+.... . .+ ....+.++.+.|.+.+.+.+ + .++++++|++++..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~--------------------- 140 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLV--EFRTSTHVVGIEQDG--------------------- 140 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCc--EEEeCCEEEEEecCC---------------------
Confidence 011100 0 00 11355667777777666554 5 688899999998643
Q ss_pred CCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 131 ~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.++ .++.+|.||.|.|..|
T Consensus 141 -~~v~v~~~~g-----~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 141 -DGVTVFDQQG-----NRWTGDALIGCDGVKS 166 (396)
T ss_pred -CceEEEEcCC-----CEEecCEEEECCCcCh
Confidence 3477776665 4789999999999875
No 123
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.95 E-value=8.2e-09 Score=105.00 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=79.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC-----cc--c-----cccc---------cccceee--cCCccc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD-----IG--G-----AWIK---------TVETTML--QTPKQL 57 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~-----~G--g-----~w~~---------~~~~~~~--~~~~~~ 57 (522)
|+.+||+|||||++|+++|..|.+.|++|+|||+.+. .| | .+.. .++.+.- ..|...
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKR 80 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccce
Confidence 7778999999999999999999999999999998741 11 1 1111 1111110 001100
Q ss_pred e----------eecCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCC
Q 009917 58 Y----------QFSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (522)
Q Consensus 58 ~----------~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 126 (522)
+ .|...............+..+..-|.+-++.. ++ .++++++|++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i--~i~~~~~v~~~~~~~----------------- 141 (384)
T PRK08849 81 LETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNL--TLMCPEKLADLEFSA----------------- 141 (384)
T ss_pred EEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCe--EEECCCceeEEEEcC-----------------
Confidence 0 01100000000001112334444444444443 45 688899999998764
Q ss_pred CCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 127 ~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+..+|+++++ .++++|.||.|+|..|
T Consensus 142 -----~~~~v~~~~g-----~~~~~~lvIgADG~~S 167 (384)
T PRK08849 142 -----EGNRVTLESG-----AEIEAKWVIGADGANS 167 (384)
T ss_pred -----CeEEEEECCC-----CEEEeeEEEEecCCCc
Confidence 3467888765 5899999999999885
No 124
>PRK10015 oxidoreductase; Provisional
Probab=98.95 E-value=1.1e-08 Score=105.17 Aligned_cols=131 Identities=20% Similarity=0.246 Sum_probs=82.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc------ccc-c----cccceeecCC------ccceeecC---
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG------AWI-K----TVETTMLQTP------KQLYQFSD--- 62 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg------~w~-~----~~~~~~~~~~------~~~~~~~~--- 62 (522)
++||+||||||||++||..|++.|++|+|+|+.+.+|. ... . ..|++....| ...+.+..
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES 84 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence 47999999999999999999999999999999876542 111 1 1222211111 11111110
Q ss_pred ---CCCCCC-----CCCCC-CChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 009917 63 ---YPWPDS-----VTTDF-PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (522)
Q Consensus 63 ---~~~~~~-----~~~~~-~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
..+... ....| ..+..+.++|.+.+++.+. .+..+++|+.+...+ ++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv--~i~~~~~V~~i~~~~----------------------~~ 140 (429)
T PRK10015 85 AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA--QFIPGVRVDALVREG----------------------NK 140 (429)
T ss_pred ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCC--EEECCcEEEEEEEeC----------------------CE
Confidence 001100 01122 2456777788888888888 788899999987653 23
Q ss_pred EEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 134 ~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+...++ .++.+|.||+|+|..|
T Consensus 141 v~~v~~~~-----~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 141 VTGVQAGD-----DILEANVVILADGVNS 164 (429)
T ss_pred EEEEEeCC-----eEEECCEEEEccCcch
Confidence 43222222 4799999999999764
No 125
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.94 E-value=7.6e-09 Score=105.77 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=79.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhc---CCceEEEecCCCc-----c------ccccc---------cccceee-cCCcc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLK---GFHPIVFEARSDI-----G------GAWIK---------TVETTML-QTPKQ 56 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~---g~~v~i~e~~~~~-----G------g~w~~---------~~~~~~~-~~~~~ 56 (522)
|.+.+|+|||||++|+++|..|++. |++|+|||+.... + +.+.. .++.+.- -.+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 7889999999999999999999998 9999999995211 1 01110 0110000 00000
Q ss_pred ceeecC------CCCC--C-CC-C-CCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCC
Q 009917 57 LYQFSD------YPWP--D-SV-T-TDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGN 124 (522)
Q Consensus 57 ~~~~~~------~~~~--~-~~-~-~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 124 (522)
.+.+.+ ..+. + .. . ........+.+.+.+.+... ++ .++++++|+++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~~--------------- 143 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERTQ--------------- 143 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEcC---------------
Confidence 001100 0000 0 00 0 01123445556666655443 45 788899999997654
Q ss_pred CCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 125 GQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.|.|++.++ .++.+|.||.|.|..|
T Consensus 144 -------~~~~v~~~~g-----~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 144 -------GSVRVTLDDG-----ETLTGRLLVAADGSHS 169 (395)
T ss_pred -------CeEEEEECCC-----CEEEeCEEEEecCCCh
Confidence 4578877665 4689999999999874
No 126
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.94 E-value=7.2e-09 Score=105.55 Aligned_cols=129 Identities=13% Similarity=0.157 Sum_probs=81.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc--------ccccc------------ccccee--ecCCccceee-c
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG--------GAWIK------------TVETTM--LQTPKQLYQF-S 61 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G--------g~w~~------------~~~~~~--~~~~~~~~~~-~ 61 (522)
||+|||||++|+++|..|++.|++|+|||+.+.++ ..... ..+.+. ...+...+.+ .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 69999999999999999999999999999997542 11100 000100 0001000000 0
Q ss_pred C-------CCCCC---CCCCCCCChhHHHHHHHHHHHhcC-CccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCC
Q 009917 62 D-------YPWPD---SVTTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (522)
Q Consensus 62 ~-------~~~~~---~~~~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (522)
. ++... .......++.++.+.|.+.+.+.+ + .++++++|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~~--------------------- 137 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRHS--------------------- 137 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEecC---------------------
Confidence 0 01000 000112355677777777777776 6 789999999998754
Q ss_pred CCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 131 ~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.++ +++.+|.||.|.|..|
T Consensus 138 -~~~~v~~~~g-----~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 138 -DHVELTLDDG-----QQLRARLLVGADGANS 163 (385)
T ss_pred -CeeEEEECCC-----CEEEeeEEEEeCCCCC
Confidence 4577777665 4689999999999875
No 127
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.94 E-value=1.6e-08 Score=103.17 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=78.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc------cc---------------cccc------cccceeecCCc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI------GG---------------AWIK------TVETTMLQTPK 55 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~------Gg---------------~w~~------~~~~~~~~~~~ 55 (522)
+.+|+|||||++|+++|..|++.|++|+|+|+.+.. +. .|.. ...+..+....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 479999999999999999999999999999998741 11 1100 00111110001
Q ss_pred cceeecCCCCCCCCCC---CCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 009917 56 QLYQFSDYPWPDSVTT---DFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (522)
Q Consensus 56 ~~~~~~~~~~~~~~~~---~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
.... .+++..... ...+..++.+.|.+.+...++ .++++++|++++..+ .+
T Consensus 82 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv--~v~~~~~v~~i~~~~---------------------~~ 135 (392)
T PRK08243 82 RRHR---IDLTELTGGRAVTVYGQTEVTRDLMAARLAAGG--PIRFEASDVALHDFD---------------------SD 135 (392)
T ss_pred EEEE---eccccccCCceEEEeCcHHHHHHHHHHHHhCCC--eEEEeeeEEEEEecC---------------------CC
Confidence 1111 111110000 111234555555555556666 799999999987622 12
Q ss_pred cEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 133 ~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.-.|++.. +|+..++++|.||.|.|..|
T Consensus 136 ~~~V~~~~--~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 136 RPYVTYEK--DGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred ceEEEEEc--CCeEEEEEeCEEEECCCCCC
Confidence 23466532 24556899999999999986
No 128
>PRK07190 hypothetical protein; Provisional
Probab=98.94 E-value=1.3e-08 Score=106.22 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=83.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--ccc------------------ceeecC-----Cccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVE------------------TTMLQT-----PKQL 57 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~------------------~~~~~~-----~~~~ 57 (522)
..+|+||||||+||++|..|++.|++|+|+|+.+.+...-.. ..+ +..+.. ....
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 479999999999999999999999999999998754311000 000 000000 0000
Q ss_pred ee--ecCCC-CCCCCC--CCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 009917 58 YQ--FSDYP-WPDSVT--TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (522)
Q Consensus 58 ~~--~~~~~-~~~~~~--~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
.. +..+. .+.... ....+...+.+.|.+.+++.++ .++++++|++++.++ +
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv--~v~~~~~v~~l~~~~----------------------~ 140 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA--AVKRNTSVVNIELNQ----------------------A 140 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcC----------------------C
Confidence 00 00000 000000 0112455677778887888888 899999999998765 3
Q ss_pred cEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 133 ~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.+.+++.++ +++.+++||.|+|..|
T Consensus 141 ~v~v~~~~g-----~~v~a~~vVgADG~~S 165 (487)
T PRK07190 141 GCLTTLSNG-----ERIQSRYVIGADGSRS 165 (487)
T ss_pred eeEEEECCC-----cEEEeCEEEECCCCCH
Confidence 356666543 4799999999999875
No 129
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.93 E-value=9.8e-09 Score=105.24 Aligned_cols=133 Identities=12% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecC-CC--ccc--------cccc---------cccceee--cCCccce
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR-SD--IGG--------AWIK---------TVETTML--QTPKQLY 58 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~-~~--~Gg--------~w~~---------~~~~~~~--~~~~~~~ 58 (522)
|..+||+|||||++|+++|..|.+.|++|+|+|+. +. ++. .... .++.+.- ..|...+
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM 81 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence 55689999999999999999999999999999986 21 111 0000 0111100 0111111
Q ss_pred e-----------ecCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCC
Q 009917 59 Q-----------FSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQ 126 (522)
Q Consensus 59 ~-----------~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 126 (522)
. |..................+.+.|.+-+... ++ .+.++++|++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v--~v~~~~~v~~i~~~~----------------- 142 (405)
T PRK08850 82 EVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNV--TLLMPARCQSIAVGE----------------- 142 (405)
T ss_pred EEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCe--EEEcCCeeEEEEeeC-----------------
Confidence 1 1110000000000112344555555555443 45 688899999998754
Q ss_pred CCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 127 PFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 127 ~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.++ +++++|.||.|.|..|
T Consensus 143 -----~~~~v~~~~g-----~~~~a~lvIgADG~~S 168 (405)
T PRK08850 143 -----SEAWLTLDNG-----QALTAKLVVGADGANS 168 (405)
T ss_pred -----CeEEEEECCC-----CEEEeCEEEEeCCCCC
Confidence 3467777665 5799999999999875
No 130
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.93 E-value=1e-08 Score=105.20 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=83.2
Q ss_pred CcEEEECCChhHHHHHHHHHhcC--CceEEEecCCCcc------c--cccc---cccceee-------cCCccc------
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIG------G--AWIK---TVETTML-------QTPKQL------ 57 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g--~~v~i~e~~~~~G------g--~w~~---~~~~~~~-------~~~~~~------ 57 (522)
+||+|||||++|+++|..|++.| ++|+|||+.+... | .+.. ....+.+ -.+...
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 68999999999999999999985 9999999986421 0 0000 0000000 000001
Q ss_pred ----------eeecCCCCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCC
Q 009917 58 ----------YQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQP 127 (522)
Q Consensus 58 ----------~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (522)
+.|...............+..+.+.|.+.+.+.++ .++++++|++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~------------------ 141 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETRD------------------ 141 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcC------------------
Confidence 11110000000001124567888888888888887 899999999998754
Q ss_pred CCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 128 FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 128 ~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.++ .++.+|.||.|+|..|
T Consensus 142 ----~~v~v~~~~g-----~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 142 ----EGVTVTLSDG-----SVLEARLLVAADGARS 167 (403)
T ss_pred ----CEEEEEECCC-----CEEEeCEEEEcCCCCh
Confidence 3477777654 4789999999999774
No 131
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.93 E-value=2.5e-08 Score=106.28 Aligned_cols=134 Identities=22% Similarity=0.359 Sum_probs=84.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc---------------ccc-----ceee------cCCcc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK---------------TVE-----TTML------QTPKQ 56 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~---------------~~~-----~~~~------~~~~~ 56 (522)
..+|+|||||++||++|..|.+.|++|+|||+.+.+...... ..+ +... .....
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 368999999999999999999999999999999865322110 000 0000 00011
Q ss_pred ceeecCCCCCCCCCCCC--CChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 009917 57 LYQFSDYPWPDSVTTDF--PDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (522)
Q Consensus 57 ~~~~~~~~~~~~~~~~~--~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
...+...+......+.+ .+...+.++|.+.+.++ ++ .++++++|++++.++ +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v--~v~~~~~v~~i~~~~----------------------~~ 158 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI--DLRWKNKVTGLEQHD----------------------DG 158 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEEcC----------------------CE
Confidence 11111111000000111 34566778888877776 45 799999999998764 34
Q ss_pred EEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 134 ~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+++.+.+ + .+++.+|+||.|.|..|
T Consensus 159 v~v~~~~~~-g-~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 159 VTLTVETPD-G-PYTLEADWVIACDGARS 185 (547)
T ss_pred EEEEEECCC-C-cEEEEeCEEEECCCCCc
Confidence 677766432 2 24789999999999875
No 132
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.92 E-value=9.9e-09 Score=105.24 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=80.1
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc-------------ccc-ccc---------cccceee--cCCccce
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-------------GGA-WIK---------TVETTML--QTPKQLY 58 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~-------------Gg~-w~~---------~~~~~~~--~~~~~~~ 58 (522)
+||+|||||++|+++|..|.+.|++|+|||+.+.. +.. +.. .++.+.- ..|...+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 79999999999999999999999999999997621 110 000 0111100 0111111
Q ss_pred -----------eecCCCCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCC
Q 009917 59 -----------QFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQP 127 (522)
Q Consensus 59 -----------~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (522)
.|..................+.+-|.+.+++.++ .++++++|++++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~------------------ 142 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRSG------------------ 142 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEcC------------------
Confidence 1111000000001112344555556565666666 788899999998754
Q ss_pred CCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 128 FGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 128 ~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.|.|++.++ +++.+|.||.|.|..|
T Consensus 143 ----~~v~v~~~~g-----~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 143 ----DDWLLTLADG-----RQLRAPLVVAADGANS 168 (405)
T ss_pred ----CeEEEEECCC-----CEEEeCEEEEecCCCc
Confidence 3478887665 5799999999999875
No 133
>PRK07588 hypothetical protein; Provisional
Probab=98.92 E-value=9.2e-09 Score=104.96 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=78.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc---ccccc---cc-------------------ccceeecCCcc--
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI---GGAWI---KT-------------------VETTMLQTPKQ-- 56 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~---Gg~w~---~~-------------------~~~~~~~~~~~-- 56 (522)
++|+|||||++|+++|..|++.|++|+|+|+.+.. |..|. .. .....+.....
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 47999999999999999999999999999988754 21111 10 00111100100
Q ss_pred ceeecCCCCCCCCCCC--CCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcE
Q 009917 57 LYQFSDYPWPDSVTTD--FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (522)
Q Consensus 57 ~~~~~~~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (522)
...+............ ..++.++.+.|.+.+.. ++ .++++++|++++..+ +.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v--~i~~~~~v~~i~~~~----------------------~~v 135 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QV--ETIFDDSIATIDEHR----------------------DGV 135 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-Ce--EEEeCCEEeEEEECC----------------------CeE
Confidence 1111110011000001 12455566555543322 44 799999999998754 457
Q ss_pred EEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 135 TVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 135 ~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+|+++++ +++.+|.||.|.|..|
T Consensus 136 ~v~~~~g-----~~~~~d~vIgADG~~S 158 (391)
T PRK07588 136 RVTFERG-----TPRDFDLVIGADGLHS 158 (391)
T ss_pred EEEECCC-----CEEEeCEEEECCCCCc
Confidence 8887765 4679999999999875
No 134
>PRK07045 putative monooxygenase; Reviewed
Probab=98.90 E-value=2.3e-08 Score=101.91 Aligned_cols=133 Identities=14% Similarity=0.219 Sum_probs=81.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc---cc---cccc---c------ccceeec--CCcc-ceeecC--
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI---GG---AWIK---T------VETTMLQ--TPKQ-LYQFSD-- 62 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~---Gg---~w~~---~------~~~~~~~--~~~~-~~~~~~-- 62 (522)
+++|+|||||++|+++|..|++.|++|+|+|+.+.. ++ .+.. . .+.+.-. .+.. ...+.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 579999999999999999999999999999998754 12 1111 0 0000000 0000 001110
Q ss_pred ----CCCCCCCCCC---CCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcE
Q 009917 63 ----YPWPDSVTTD---FPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKW 134 (522)
Q Consensus 63 ----~~~~~~~~~~---~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (522)
++++...... ..++.++.+.|.+.++.. ++ .++++++|++++..+ + ...+
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~--~------------------~~~~ 142 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDA--D------------------GTVT 142 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECC--C------------------CcEE
Confidence 1111100011 134566777676665443 45 799999999998764 1 1125
Q ss_pred EEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 135 TVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 135 ~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.|++.++ +++.+|.||.|.|..|
T Consensus 143 ~v~~~~g-----~~~~~~~vIgADG~~S 165 (388)
T PRK07045 143 SVTLSDG-----ERVAPTVLVGADGARS 165 (388)
T ss_pred EEEeCCC-----CEEECCEEEECCCCCh
Confidence 6766554 4789999999999885
No 135
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.90 E-value=1.3e-08 Score=103.82 Aligned_cols=131 Identities=17% Similarity=0.186 Sum_probs=81.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc----cc---------------------ccccc-----cc--cee
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI----GG---------------------AWIKT-----VE--TTM 50 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~----Gg---------------------~w~~~-----~~--~~~ 50 (522)
.+||+|||||++|+++|..|.+.|++|+|+|+.+.. ++ .|... .+ ...
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 479999999999999999999999999999987521 11 11110 00 000
Q ss_pred e-cCCccceeecCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCC
Q 009917 51 L-QTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPF 128 (522)
Q Consensus 51 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (522)
. ........|..............++..+.+.|.+.++.. ++ .+.++++|++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~------------------- 143 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNV--TLRCPASLQALQRDD------------------- 143 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCc--EEEcCCeeEEEEEcC-------------------
Confidence 0 000011111110010000001134566667777766665 66 688899999987654
Q ss_pred CCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 129 GSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 129 ~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.|.|++.++ .++++|.||.|.|..|
T Consensus 144 ---~~~~v~~~~g-----~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 144 ---DGWELTLADG-----EEIQAKLVIGADGANS 169 (391)
T ss_pred ---CeEEEEECCC-----CEEEeCEEEEeCCCCc
Confidence 3478877664 4789999999999875
No 136
>PRK06185 hypothetical protein; Provisional
Probab=98.89 E-value=1.7e-08 Score=103.62 Aligned_cols=134 Identities=23% Similarity=0.327 Sum_probs=82.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc-----cccccc----------cccc-----------eeecCCcc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-----GGAWIK----------TVET-----------TMLQTPKQ 56 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~-----Gg~w~~----------~~~~-----------~~~~~~~~ 56 (522)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. |..+.. ..+. +.+.....
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 489999999999999999999999999999997542 212111 0000 00100000
Q ss_pred ---ceeecCCCCCCCCCCCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 009917 57 ---LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (522)
Q Consensus 57 ---~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
...|...+.+.. ...+.+...+.++|.+.+.+. ++ .+.++++|+++...+ +.
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~---------------------~~ 141 (407)
T PRK06185 86 TVTLADFSRLPTPYP-YIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG---------------------GR 141 (407)
T ss_pred EEEecchhhcCCCCC-cEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC---------------------CE
Confidence 011111111100 112345677888888877665 56 788899999998754 11
Q ss_pred cEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 133 ~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
...|++...+ + ..++.+|.||.|+|..|
T Consensus 142 v~~v~~~~~~-g-~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 142 VTGVRARTPD-G-PGEIRADLVVGADGRHS 169 (407)
T ss_pred EEEEEEEcCC-C-cEEEEeCEEEECCCCch
Confidence 1234544321 2 24789999999999875
No 137
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.88 E-value=2.2e-08 Score=102.04 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=80.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc---cccccc-----------c--ccee--e----cCCccceee
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GAWIKT-----------V--ETTM--L----QTPKQLYQF 60 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G---g~w~~~-----------~--~~~~--~----~~~~~~~~~ 60 (522)
+.+|+|||||++|+++|..|.+.|++|+|+|+.+... ..|..+ . -++. + ..+...+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 3799999999999999999999999999999987642 222210 0 0000 0 001111111
Q ss_pred cC-----CCCCCC--CCC---CCCChhHHHHHHHHHHHhcC-CccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCC
Q 009917 61 SD-----YPWPDS--VTT---DFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFG 129 (522)
Q Consensus 61 ~~-----~~~~~~--~~~---~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (522)
.. ..+... ..+ .......+.+.|.+.+.+.+ + .+. +++|++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~~~-~~~v~~i~~~~-------------------- 141 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNL--TWF-PARAQGLEVDP-------------------- 141 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCc--EEE-cceeEEEEecC--------------------
Confidence 10 000000 000 01235667777777777765 4 455 88899987654
Q ss_pred CCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 130 SRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 130 ~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.++ .++.+|.||.|+|..|
T Consensus 142 --~~~~v~~~~g-----~~~~a~~vI~adG~~S 167 (388)
T PRK07608 142 --DAATLTLADG-----QVLRADLVVGADGAHS 167 (388)
T ss_pred --CeEEEEECCC-----CEEEeeEEEEeCCCCc
Confidence 3477777665 4799999999999875
No 138
>PRK07538 hypothetical protein; Provisional
Probab=98.88 E-value=3.2e-08 Score=101.70 Aligned_cols=135 Identities=17% Similarity=0.187 Sum_probs=83.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc---ccccccccc-------ee-------ecCCccceeecC----
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG---GAWIKTVET-------TM-------LQTPKQLYQFSD---- 62 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G---g~w~~~~~~-------~~-------~~~~~~~~~~~~---- 62 (522)
++|+|||||++|+++|..|.+.|++|+|||+.+.+. .... ..|+ +. ...+...+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~-l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGIN-LLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCccee-eCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCC
Confidence 479999999999999999999999999999987542 1110 0010 00 001111111110
Q ss_pred ----CCCCCCCCCC----CCChhHHHHHHHHHHHh-cCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 009917 63 ----YPWPDSVTTD----FPDHNQVLDYIQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (522)
Q Consensus 63 ----~~~~~~~~~~----~~~~~~~~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
.+........ ...+.++.+.|.+.+.+ .+. ..++++++|++++..+ +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~----------------------~~ 136 (413)
T PRK07538 80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA----------------------DV 136 (413)
T ss_pred EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC----------------------Cc
Confidence 0111000001 13566777777665543 442 2599999999998754 22
Q ss_pred EEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 134 WTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 134 ~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+.+.++.+|+.+++++|.||.|.|..|
T Consensus 137 ~~~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 137 TVVFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred eEEEEeccCCCccceEEeeEEEECCCCCH
Confidence 55666665445567899999999999885
No 139
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.87 E-value=4.5e-09 Score=77.65 Aligned_cols=51 Identities=31% Similarity=0.546 Sum_probs=43.8
Q ss_pred EECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-cccceeecCCccce
Q 009917 8 IVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPKQLY 58 (522)
Q Consensus 8 IIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-~~~~~~~~~~~~~~ 58 (522)
|||||++||++|..|++.|.+|+|||+++.+||.+.. .+++..++...+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~ 52 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYF 52 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEE
Confidence 8999999999999999999999999999999999987 66777777665544
No 140
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.87 E-value=2.5e-08 Score=101.44 Aligned_cols=131 Identities=24% Similarity=0.295 Sum_probs=85.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC-C---cc--ccccc----cccceee-------cC-Ccc--------
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-D---IG--GAWIK----TVETTML-------QT-PKQ-------- 56 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~-~---~G--g~w~~----~~~~~~~-------~~-~~~-------- 56 (522)
.++|+|||||++|+++|..|++.|++|+|||+.+ . .| ..... ....+.+ .. +..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999982 2 11 00000 0111111 00 111
Q ss_pred --ceeecCCCCCCCCCCCCCChhHHHHHHHHHHHhcC-CccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCc
Q 009917 57 --LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGK 133 (522)
Q Consensus 57 --~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (522)
...|............-.+..++.+-|.+.+...+ + .+.++++|+.++.++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~~----------------------~~ 137 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQDG----------------------DG 137 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEcC----------------------Cc
Confidence 11222111111101222366788888888887765 6 789999999999875 33
Q ss_pred EEEEEe-cCCCCceeEEEeCEEEEeecccC
Q 009917 134 WTVAVE-DAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 134 ~~v~~~-~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
..+++. ++ +++.||.||-|.|.+|
T Consensus 138 v~v~l~~dG-----~~~~a~llVgADG~~S 162 (387)
T COG0654 138 VTVTLSFDG-----ETLDADLLVGADGANS 162 (387)
T ss_pred eEEEEcCCC-----cEEecCEEEECCCCch
Confidence 667777 54 4899999999999886
No 141
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.87 E-value=4e-08 Score=75.54 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=60.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHHH
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYIQ 84 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~ 84 (522)
+|+|||||+.|+.+|..|.+.|.+|+++++++.+. +. -.+++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-------------------------------~~--~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-------------------------------PG--FDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-------------------------------TT--SSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-------------------------------hh--cCHHHHHHHH
Confidence 58999999999999999999999999999987642 01 1267888888
Q ss_pred HHHHhcCCccceEeeeeEEEEEEcC
Q 009917 85 SYASHFDLRKHIKFNRKVVGIEFEG 109 (522)
Q Consensus 85 ~~~~~~~l~~~i~~~~~V~~v~~~~ 109 (522)
+..++.++ ++.+++.|.+++.++
T Consensus 48 ~~l~~~gV--~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 48 EYLRKRGV--EVHTNTKVKEIEKDG 70 (80)
T ss_dssp HHHHHTTE--EEEESEEEEEEEEET
T ss_pred HHHHHCCC--EEEeCCEEEEEEEeC
Confidence 88988999 999999999999876
No 142
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.85 E-value=3.8e-08 Score=99.50 Aligned_cols=144 Identities=19% Similarity=0.211 Sum_probs=89.2
Q ss_pred cEEEECCChhHHHHHHHH--HhcCCceEEEecCCCc--cc--ccccccccee------ec-CCccceeecCCCCCCCCCC
Q 009917 5 QIAIVGAGVSGLLACKYL--LLKGFHPIVFEARSDI--GG--AWIKTVETTM------LQ-TPKQLYQFSDYPWPDSVTT 71 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l--~~~g~~v~i~e~~~~~--Gg--~w~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~ 71 (522)
||+|||||+||+++|..| .+.|.+|+|+|+++.. .. +|..--+... .. .+.....+.+...... ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~-~~ 79 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILI-DY 79 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEc-cc
Confidence 799999999999999999 6679999999988766 22 3333111100 00 0011111111110000 11
Q ss_pred CC--CChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEE
Q 009917 72 DF--PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVH 149 (522)
Q Consensus 72 ~~--~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~ 149 (522)
.| .....+.+++.+.+...+ .+.++++|.+|+... ..+.|++.++ .++
T Consensus 80 ~Y~~i~~~~f~~~l~~~~~~~~---~~~~~~~V~~i~~~~----------------------~~~~v~~~~g-----~~i 129 (374)
T PF05834_consen 80 PYCMIDRADFYEFLLERAAAGG---VIRLNARVTSIEETG----------------------DGVLVVLADG-----RTI 129 (374)
T ss_pred ceEEEEHHHHHHHHHHHhhhCC---eEEEccEEEEEEecC----------------------ceEEEEECCC-----CEE
Confidence 22 467788888887777333 478899999999865 3477888777 589
Q ss_pred EeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEe
Q 009917 150 QVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIH 185 (522)
Q Consensus 150 ~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~h 185 (522)
+++.||-|+|..+ . ...-. +...|.|-.+.
T Consensus 130 ~a~~VvDa~g~~~-~--~~~~~---~~Q~f~G~~v~ 159 (374)
T PF05834_consen 130 RARVVVDARGPSS-P--KARPL---GLQHFYGWEVE 159 (374)
T ss_pred EeeEEEECCCccc-c--ccccc---ccceeEEEEEe
Confidence 9999999999542 2 11112 55566665443
No 143
>PRK11445 putative oxidoreductase; Provisional
Probab=98.85 E-value=3.9e-08 Score=98.64 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=79.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc---------ccccc-c---cc-------cceeecCCc----ccee
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI---------GGAWI-K---TV-------ETTMLQTPK----QLYQ 59 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~---------Gg~w~-~---~~-------~~~~~~~~~----~~~~ 59 (522)
+||+||||||||+++|..|++. ++|+|+|+.+.. |+.-. . .. +...+..+. ....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 6999999999999999999999 999999988743 22111 1 00 111111110 0001
Q ss_pred ecCCCCCCCCCCC--CCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEE
Q 009917 60 FSDYPWPDSVTTD--FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVA 137 (522)
Q Consensus 60 ~~~~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 137 (522)
+.. +....+... -..+.++.+.+.+.+ ..++ .+++++.|.+++..+ +.|.|+
T Consensus 81 ~~~-~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~~----------------------~~~~v~ 134 (351)
T PRK11445 81 LAN-SLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWRED----------------------DGYHVI 134 (351)
T ss_pred ccc-cchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEcC----------------------CEEEEE
Confidence 110 000000111 245667777777643 3455 788999999998754 458887
Q ss_pred EecCCCCceeEEEeCEEEEeecccC
Q 009917 138 VEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 138 ~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+... |+..++++|.||.|+|..|
T Consensus 135 ~~~~--g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 135 FRAD--GWEQHITARYLVGADGANS 157 (351)
T ss_pred EecC--CcEEEEEeCEEEECCCCCc
Confidence 6432 3334789999999999875
No 144
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.84 E-value=5.1e-08 Score=99.24 Aligned_cols=134 Identities=18% Similarity=0.139 Sum_probs=77.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc------cc--cccc---c------cccee-ecCCccceeec----
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI------GG--AWIK---T------VETTM-LQTPKQLYQFS---- 61 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~------Gg--~w~~---~------~~~~~-~~~~~~~~~~~---- 61 (522)
.+|+|||||++|+++|..|++.|++|+|||+.+.. |. .+.. . .+.+. ...+...+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 79999999999999999999999999999998741 11 1111 0 00000 00011111111
Q ss_pred --CCCCCCCCC-CC--CCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEE
Q 009917 62 --DYPWPDSVT-TD--FPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV 136 (522)
Q Consensus 62 --~~~~~~~~~-~~--~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 136 (522)
..++..... .. ......+.+-|.+.+...+. .++++++++.+.... .....|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~~~~~~~~v~~~~~~---------------------~~~~~V 139 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGL--TTVYDADDVRLHDLA---------------------GDRPYV 139 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCC--eEEEeeeeEEEEecC---------------------CCccEE
Confidence 011111000 00 11234455556555666666 788888887775432 123457
Q ss_pred EEecCCCCceeEEEeCEEEEeecccC
Q 009917 137 AVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 137 ~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
++... |+..++++|.||-|.|..|
T Consensus 140 ~~~~~--g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 140 TFERD--GERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred EEEEC--CeEEEEEeCEEEECCCCch
Confidence 76521 3345789999999999986
No 145
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.84 E-value=2.4e-08 Score=101.60 Aligned_cols=129 Identities=17% Similarity=0.151 Sum_probs=80.7
Q ss_pred cEEEECCChhHHHHHHHHHhcC-CceEEEecCCCc----c------ccccc---------ccccee-ecCCccceeecCC
Q 009917 5 QIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDI----G------GAWIK---------TVETTM-LQTPKQLYQFSDY 63 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g-~~v~i~e~~~~~----G------g~w~~---------~~~~~~-~~~~~~~~~~~~~ 63 (522)
||+|||||++|+++|..|.+.| ++|+|+|+.+.. | +.+.. ..+.+. ...+.....+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 6999999999999999999999 999999998643 1 00100 000000 0001111111100
Q ss_pred ------CCC--CCC--CCCC-CChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 009917 64 ------PWP--DSV--TTDF-PDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (522)
Q Consensus 64 ------~~~--~~~--~~~~-~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
.+. +.. ...| ..+.++.+.|.+.+... ++ +++++++|+++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~~---------------------- 136 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRNQ---------------------- 136 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEcC----------------------
Confidence 000 000 0011 34567777777777763 67 788899999998754
Q ss_pred CcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 132 ~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.++|++.++ .++.+|.||.|.|..|
T Consensus 137 ~~~~v~~~~g-----~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 137 DYVRVTLDNG-----QQLRAKLLIAADGANS 162 (382)
T ss_pred CeEEEEECCC-----CEEEeeEEEEecCCCh
Confidence 3477877654 4789999999999875
No 146
>PLN02697 lycopene epsilon cyclase
Probab=98.83 E-value=3.2e-08 Score=103.20 Aligned_cols=128 Identities=15% Similarity=0.172 Sum_probs=81.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc---cccccccccceeec------CCccceeecCC-CCCCCCCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI---GGAWIKTVETTMLQ------TPKQLYQFSDY-PWPDSVTTD 72 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~---Gg~w~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~ 72 (522)
.+||+|||||+||+++|..|.+.|++|+++|+.... .|.|......+.+. .+.....+.+. +... ...
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~--~~~ 185 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI--GRA 185 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec--cCc
Confidence 379999999999999999999999999999986433 35665311111110 01111111110 0000 112
Q ss_pred C--CChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEE-EEecCCCCceeEE
Q 009917 73 F--PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTV-AVEDAKNHSTEVH 149 (522)
Q Consensus 73 ~--~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~g~~~~~ 149 (522)
| ..+..+.+.+.+.+.+.++ .+ ++++|+.++... +.+.+ ++.++ .++
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~~----------------------~~~~vv~~~dG-----~~i 235 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGV--SY-LSSKVDRITEAS----------------------DGLRLVACEDG-----RVI 235 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEcC----------------------CcEEEEEEcCC-----cEE
Confidence 2 4667788888888877776 45 788999988654 23443 33443 579
Q ss_pred EeCEEEEeecccC
Q 009917 150 QVDFVILCVGRFS 162 (522)
Q Consensus 150 ~~d~lvvAtG~~s 162 (522)
.++.||+|+|..|
T Consensus 236 ~A~lVI~AdG~~S 248 (529)
T PLN02697 236 PCRLATVASGAAS 248 (529)
T ss_pred ECCEEEECCCcCh
Confidence 9999999999874
No 147
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.83 E-value=3.2e-08 Score=100.81 Aligned_cols=125 Identities=24% Similarity=0.317 Sum_probs=83.2
Q ss_pred EEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecC-----Ccc-----------c----eeec-----
Q 009917 7 AIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQT-----PKQ-----------L----YQFS----- 61 (522)
Q Consensus 7 vIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~-----~~~-----------~----~~~~----- 61 (522)
+|||||+|||++|..|++.|.+|+|+|+++.+|+.+...- +-+|+. ... . ..|.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG-~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISG-GGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccC-CceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 6999999999999999999999999999998887543210 111110 000 0 0000
Q ss_pred ------CCCCCC-CCCCCCC---ChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 009917 62 ------DYPWPD-SVTTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (522)
Q Consensus 62 ------~~~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
..++.. .....|| ...++.+.+.+.+++.++ .+.++++|++++..+
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~~---------------------- 135 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKDD---------------------- 135 (400)
T ss_pred HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEecC----------------------
Confidence 000000 0012333 346788888888888888 899999999997643
Q ss_pred CcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 132 ~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.|.|++. + .++.+|.||+|+|..+
T Consensus 136 ~~~~v~~~-~-----~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 136 NGFGVETS-G-----GEYEADKVILATGGLS 160 (400)
T ss_pred CeEEEEEC-C-----cEEEcCEEEECCCCcc
Confidence 34777662 2 3689999999999873
No 148
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.80 E-value=8.6e-08 Score=98.85 Aligned_cols=134 Identities=18% Similarity=0.252 Sum_probs=83.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC----ccccccc-c--------------ccceeecCCccc-eeecC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD----IGGAWIK-T--------------VETTMLQTPKQL-YQFSD 62 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~----~Gg~w~~-~--------------~~~~~~~~~~~~-~~~~~ 62 (522)
++||+||||||||+++|..|++.|++|+|+|+... .||.-.. . ..+.++..|... ..+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 37999999999999999999999999999998753 2221110 0 111111122111 11111
Q ss_pred CCCCCCCCCCC---CChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEe
Q 009917 63 YPWPDSVTTDF---PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE 139 (522)
Q Consensus 63 ~~~~~~~~~~~---~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 139 (522)
. .. ...| ..+..+.++|.+.+.+.|. .++. .++++++.... .++.+.|++.
T Consensus 119 ~-~~---~~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~-~~v~~i~~~~~-------------------~~~~~~v~~~ 172 (450)
T PLN00093 119 T-LK---PHEYIGMVRREVLDSFLRERAQSNGA--TLIN-GLFTRIDVPKD-------------------PNGPYVIHYT 172 (450)
T ss_pred c-CC---CCCeEEEecHHHHHHHHHHHHHHCCC--EEEe-ceEEEEEeccC-------------------CCCcEEEEEE
Confidence 0 00 1122 4778888999999988887 6654 45777765320 0234677765
Q ss_pred cCC----CCceeEEEeCEEEEeecccC
Q 009917 140 DAK----NHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 140 ~~~----~g~~~~~~~d~lvvAtG~~s 162 (522)
+.. +|+..++++|.||.|+|..|
T Consensus 173 ~~~~~~~~g~~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 173 SYDSGSGAGTPKTLEVDAVIGADGANS 199 (450)
T ss_pred eccccccCCCccEEEeCEEEEcCCcch
Confidence 421 13346799999999999875
No 149
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.79 E-value=4.4e-08 Score=100.72 Aligned_cols=128 Identities=20% Similarity=0.247 Sum_probs=77.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcC-CceEEEecCCCcccc------ccc---cccceee-----------cCCcc--ceee
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGA------WIK---TVETTML-----------QTPKQ--LYQF 60 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g-~~v~i~e~~~~~Gg~------w~~---~~~~~~~-----------~~~~~--~~~~ 60 (522)
.+|+|||||++||++|..|.+.| ++|+|||+.+.++.. +.. ....+.+ ..+.. .+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 699999998875421 111 0000000 00000 0111
Q ss_pred cCC--------CCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCC
Q 009917 61 SDY--------PWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRG 132 (522)
Q Consensus 61 ~~~--------~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (522)
.+. .........-..+.++.+.|.+.+.. ..++++++|++++..+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~----------------------~ 134 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQA----------------------E 134 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecC----------------------C
Confidence 110 00000000112345555555544322 2478999999998754 4
Q ss_pred cEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 133 KWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 133 ~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.|.|++.++ .++++|.||.|.|..|
T Consensus 135 ~~~v~~~~g-----~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 135 EVQVLFTDG-----TEYRCDLLIGADGIKS 159 (414)
T ss_pred cEEEEEcCC-----CEEEeeEEEECCCccH
Confidence 588888776 4689999999999885
No 150
>PLN02661 Putative thiazole synthesis
Probab=98.79 E-value=3.4e-08 Score=96.18 Aligned_cols=140 Identities=16% Similarity=0.300 Sum_probs=78.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhc-CCceEEEecCCCccc-cccc--cccceeecCCccc-eeecCCCCCCCCCCCCC---
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQL-YQFSDYPWPDSVTTDFP--- 74 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~-g~~v~i~e~~~~~Gg-~w~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 74 (522)
..||+|||||++|+++|..|++. |++|+|+|++..+|| .|.. .+....+..+... +.--..++.. ...|.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~--~dgy~vv~ 169 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDE--QENYVVIK 169 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCccc--CCCeeEec
Confidence 36999999999999999999975 899999999988866 5543 1222222222111 1111222221 11122
Q ss_pred ChhHHHHHHHHHH-HhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCC---ceeEEE
Q 009917 75 DHNQVLDYIQSYA-SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNH---STEVHQ 150 (522)
Q Consensus 75 ~~~~~~~yl~~~~-~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g---~~~~~~ 150 (522)
+..++.+.|...+ ++.++ .+..++.|+++..++ +... + .--.|.....++.++ +...+.
T Consensus 170 ha~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~--grVa-G------------VVvnw~~v~~~~~~~s~~dp~~I~ 232 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG--DRVG-G------------VVTNWALVAQNHDTQSCMDPNVME 232 (357)
T ss_pred chHHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecC--CEEE-E------------EEeecchhhhccCCCCccceeEEE
Confidence 2234444455433 33566 777788888887653 0000 0 000133322232211 224689
Q ss_pred eCEEEEeeccc
Q 009917 151 VDFVILCVGRF 161 (522)
Q Consensus 151 ~d~lvvAtG~~ 161 (522)
+++||+|||+.
T Consensus 233 AkaVVlATGh~ 243 (357)
T PLN02661 233 AKVVVSSCGHD 243 (357)
T ss_pred CCEEEEcCCCC
Confidence 99999999965
No 151
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.78 E-value=6.6e-08 Score=100.01 Aligned_cols=135 Identities=14% Similarity=0.221 Sum_probs=81.0
Q ss_pred CcEEEECCChhHHHHHHHHHh----cCCceEEEecCC--Cc--------ccccc--------c---------cccceee-
Q 009917 4 KQIAIVGAGVSGLLACKYLLL----KGFHPIVFEARS--DI--------GGAWI--------K---------TVETTML- 51 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~----~g~~v~i~e~~~--~~--------Gg~w~--------~---------~~~~~~~- 51 (522)
+||+|||||++|+++|..|++ .|++|+|||+++ .. .|.+. . .++.+.-
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 489999999999999999998 799999999943 21 11000 0 0011100
Q ss_pred -cCCcc-----------ceeecCCCCCCCCCCCCCChhHHHHHHHHHHHhcC---CccceEeeeeEEEEEEcCCC-Cccc
Q 009917 52 -QTPKQ-----------LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFD---LRKHIKFNRKVVGIEFEGLS-GEDE 115 (522)
Q Consensus 52 -~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~---l~~~i~~~~~V~~v~~~~~~-~~~~ 115 (522)
..+.. ...|...+.... .....+...+.+.|.+.+.+.+ + .++++++|++++....+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~L~~~~~~~~~~~v--~i~~~~~v~~i~~~~~~~~~-- 155 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKED-MACIIENDNIQNSLYNRLQEYNGDNV--KILNPARLISVTIPSKYPND-- 155 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCc-eEEEEEHHHHHHHHHHHHHhCCCCCe--EEecCCeeEEEEeccccccC--
Confidence 00100 112221110000 0111355677777777777664 5 78899999999863100 00
Q ss_pred ccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 116 KSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.....+|++.++ +++++|.||.|.|..|
T Consensus 156 --------------~~~~v~v~~~~g-----~~i~a~llVgADG~~S 183 (437)
T TIGR01989 156 --------------NSNWVHITLSDG-----QVLYTKLLIGADGSNS 183 (437)
T ss_pred --------------CCCceEEEEcCC-----CEEEeeEEEEecCCCC
Confidence 123467777665 5799999999999886
No 152
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.77 E-value=8.6e-09 Score=91.97 Aligned_cols=105 Identities=23% Similarity=0.263 Sum_probs=63.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc-cccc--cccceeecCCccce-eecCCCCCCCCCCCCC-Chh
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG-AWIK--TVETTMLQTPKQLY-QFSDYPWPDSVTTDFP-DHN 77 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg-~w~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~ 77 (522)
..||+||||||+||+||+.|++.|++|+|||++..+|| .|.- .++...++.|...+ .=-..++.+.....|. +..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 37999999999999999999999999999999998886 5765 66777777665432 1001111111011222 455
Q ss_pred HHHHHHHHHHHhcCCccceEeeeeEEEEEEcC
Q 009917 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEG 109 (522)
Q Consensus 78 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~ 109 (522)
++...|..-+-+-|. ++.-.+.|+++-..+
T Consensus 97 ~~~s~L~s~a~~aGa--kifn~~~vEDvi~r~ 126 (230)
T PF01946_consen 97 EFTSTLASKAIDAGA--KIFNLTSVEDVIVRE 126 (230)
T ss_dssp HHHHHHHHHHHTTTE--EEEETEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCC--EEEeeeeeeeeEEEc
Confidence 666666665555666 666677888876543
No 153
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.77 E-value=6.8e-08 Score=97.85 Aligned_cols=126 Identities=16% Similarity=0.273 Sum_probs=79.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc-------cc----------------cccc------cccceeecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI-------GG----------------AWIK------TVETTMLQTP 54 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~-------Gg----------------~w~~------~~~~~~~~~~ 54 (522)
.||+|||||++|+++|..|.+.|++|+|+|+.+.. +. .|.. .+....+..+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 58999999999999999999999999999986311 11 1110 0011111001
Q ss_pred c--cceeecCCCCCCCC-CCCCCChhHHHHHHHHHHHhcC-CccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCC
Q 009917 55 K--QLYQFSDYPWPDSV-TTDFPDHNQVLDYIQSYASHFD-LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (522)
Q Consensus 55 ~--~~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (522)
. ....+.. .... ......+.++.+.|.+-+...+ + .++++++|+++...+
T Consensus 82 ~g~~~~~~~~---~~~~~~g~~v~r~~L~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~--------------------- 135 (374)
T PRK06617 82 KASEILDLRN---DADAVLGYVVKNSDFKKILLSKITNNPLI--TLIDNNQYQEVISHN--------------------- 135 (374)
T ss_pred CCceEEEecC---CCCCCcEEEEEHHHHHHHHHHHHhcCCCc--EEECCCeEEEEEEcC---------------------
Confidence 0 0111111 0000 0112356778888887777765 4 677899999998754
Q ss_pred CCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 131 ~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.+ .++++|.||.|.|..|
T Consensus 136 -~~v~v~~~~------~~~~adlvIgADG~~S 160 (374)
T PRK06617 136 -DYSIIKFDD------KQIKCNLLIICDGANS 160 (374)
T ss_pred -CeEEEEEcC------CEEeeCEEEEeCCCCc
Confidence 346777643 2799999999999886
No 154
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.76 E-value=8.8e-08 Score=97.99 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=81.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc---ccccc---c---------ccccee-ecCCccceeecCC----
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI---GGAWI---K---------TVETTM-LQTPKQLYQFSDY---- 63 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~---Gg~w~---~---------~~~~~~-~~~~~~~~~~~~~---- 63 (522)
.+|+|||||++||++|..|++.|++|+|+|+.+.+ |.... . .++.+. ...+...+.+.+-
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 78999999999999999999999999999998753 21111 0 000000 0000011111110
Q ss_pred -----CC---C-CCCCCCC--CChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCC
Q 009917 64 -----PW---P-DSVTTDF--PDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSR 131 (522)
Q Consensus 64 -----~~---~-~~~~~~~--~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (522)
.+ . ..+...| .++.++.+-|.+.+... ++ .++++++|++++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~~---------------------- 138 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQTG---------------------- 138 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecCC----------------------
Confidence 00 0 0001112 24567777777666543 45 689999999998653
Q ss_pred CcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 132 GKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 132 ~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+.|++.++.+ .+++.+|.||.|.|..|
T Consensus 139 ~~v~v~~~~~~~--~~~~~adlvIgADG~~S 167 (400)
T PRK06475 139 NSITATIIRTNS--VETVSAAYLIACDGVWS 167 (400)
T ss_pred CceEEEEEeCCC--CcEEecCEEEECCCccH
Confidence 347777754321 24689999999999986
No 155
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.76 E-value=5.3e-08 Score=97.86 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEE-EEEecCCCCceeEEEeCE
Q 009917 75 DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT-VAVEDAKNHSTEVHQVDF 153 (522)
Q Consensus 75 ~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~g~~~~~~~d~ 153 (522)
....+.+.+.+.+.+.|+ .++.+++|++++.++ +.|+ |.+.++ + +.+|+
T Consensus 145 ~~~~l~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~----------------------~~v~gv~~~~g-----~-i~ad~ 194 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGV--EIRTGTEVTSIDVDG----------------------GRVTGVRTSDG-----E-IRADR 194 (358)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEESEEEEEEEEET----------------------TEEEEEEETTE-----E-EEECE
T ss_pred cccchhhhhHHHHHHhhh--hccccccccchhhcc----------------------ccccccccccc-----c-cccce
Confidence 356788888888888898 899999999999875 4577 887775 4 99999
Q ss_pred EEEeecccC
Q 009917 154 VILCVGRFS 162 (522)
Q Consensus 154 lvvAtG~~s 162 (522)
||+|+|..+
T Consensus 195 vV~a~G~~s 203 (358)
T PF01266_consen 195 VVLAAGAWS 203 (358)
T ss_dssp EEE--GGGH
T ss_pred eEecccccc
Confidence 999999863
No 156
>PRK05868 hypothetical protein; Validated
Probab=98.74 E-value=1.8e-07 Score=94.59 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=32.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~ 38 (522)
++|+|||||++|+++|..|.+.|++|+|||+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 48999999999999999999999999999998754
No 157
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.73 E-value=1.1e-07 Score=95.80 Aligned_cols=140 Identities=22% Similarity=0.267 Sum_probs=81.3
Q ss_pred cEEEECCChhHHHHHHHHHhc--CCceEEEecCCCccc--cccc---cccc---------eeecCCccceeecCCCCCCC
Q 009917 5 QIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG--AWIK---TVET---------TMLQTPKQLYQFSDYPWPDS 68 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg--~w~~---~~~~---------~~~~~~~~~~~~~~~~~~~~ 68 (522)
||+|||||+||+++|..|.+. |++|+++|+.+.+|| +|.. .... +....+.....+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 699999999999999999986 999999999988777 4443 1110 00000111111111100000
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeE
Q 009917 69 VTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEV 148 (522)
Q Consensus 69 ~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~ 148 (522)
....-....++.+++.+ +.+. .+.++++|++++.+ . |++.++ .+
T Consensus 81 ~~Y~~I~r~~f~~~l~~---~l~~--~i~~~~~V~~v~~~------------------------~--v~l~dg-----~~ 124 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQ---AFPE--GVILGRKAVGLDAD------------------------G--VDLAPG-----TR 124 (370)
T ss_pred CCceEEEHHHHHHHHHH---hhcc--cEEecCEEEEEeCC------------------------E--EEECCC-----CE
Confidence 00011234555555543 3333 37778899988321 1 555555 57
Q ss_pred EEeCEEEEeecccCCCCCCCCCCCCCCCCccCceEEee
Q 009917 149 HQVDFVILCVGRFSDVPNIPEFPPKKGPEAFHGKVIHS 186 (522)
Q Consensus 149 ~~~d~lvvAtG~~s~~p~~P~~p~~~g~~~f~g~~~hs 186 (522)
+.+|.||.|.|..+ . .+... |...|.|..+..
T Consensus 125 ~~A~~VI~A~G~~s-~--~~~~~---~~Q~f~G~~~r~ 156 (370)
T TIGR01789 125 INARSVIDCRGFKP-S--AHLKG---GFQVFLGREMRL 156 (370)
T ss_pred EEeeEEEECCCCCC-C--ccccc---eeeEEEEEEEEE
Confidence 99999999999763 1 11113 666677765554
No 158
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.71 E-value=3.7e-07 Score=94.61 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=84.6
Q ss_pred cEEEECCChhHHHHHHHHHhcC-CceEEEecCCCccccccc-----ccccee------e-cC-----------------C
Q 009917 5 QIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSDIGGAWIK-----TVETTM------L-QT-----------------P 54 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g-~~v~i~e~~~~~Gg~w~~-----~~~~~~------~-~~-----------------~ 54 (522)
||||||+|.+|++||.++++.| .+|+|+|+.+..||.-.. ...+.. + +. +
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999999877664221 000000 0 00 0
Q ss_pred ----------c---cceeecCCCCCC-------C--C-C-----CCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEE
Q 009917 55 ----------K---QLYQFSDYPWPD-------S--V-T-----TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIE 106 (522)
Q Consensus 55 ----------~---~~~~~~~~~~~~-------~--~-~-----~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~ 106 (522)
. ..+. ...++.. . . . .....+.++.+.+.+.+++.++ .++++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv--~i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI--DTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC--EEEeCCEeeEeE
Confidence 0 0000 0111100 0 0 0 0112446788888888999998 899999999998
Q ss_pred EcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 107 FEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.++ +...+-|.+.+. +++...+.+|.||+|||.++
T Consensus 158 ~~~--------------------~g~v~Gv~~~~~-~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 158 QDD--------------------QGTVVGVVVKGK-GKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred ECC--------------------CCcEEEEEEEeC-CCeEEEEecceEEEecCCCC
Confidence 754 012233444442 24445678999999999874
No 159
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.71 E-value=9.3e-08 Score=99.87 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=35.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCC-Cccc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS-DIGG 40 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~-~~Gg 40 (522)
|.++||+|||||+||++||..+++.|.+|+++|++. .+|+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 345899999999999999999999999999999983 5654
No 160
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.70 E-value=1.4e-08 Score=104.38 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=35.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc----cccceeec--C--------CccceeecCCCCC--CC
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK----TVETTMLQ--T--------PKQLYQFSDYPWP--DS 68 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~----~~~~~~~~--~--------~~~~~~~~~~~~~--~~ 68 (522)
||||||||++|++||..+++.|.+|+|+|+.+.+||.... ...+.... . ...+......+.+ ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 7999999999999999999999999999999999997765 11111100 0 0001110000100 00
Q ss_pred CC-CCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCcee
Q 009917 69 VT-TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTE 147 (522)
Q Consensus 69 ~~-~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~ 147 (522)
+. ........+...+.+.+.+.++ .+.+++.|.++..++ +.-+.|++.+.. | ..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~---------------------~~i~~V~~~~~~-g-~~ 135 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDG---------------------GRITGVIVETKS-G-RK 135 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccc---------------------cccccccccccc-c-cc
Confidence 00 1122334555677777777888 899999999998865 234566666532 3 47
Q ss_pred EEEeCEEEEeeccc
Q 009917 148 VHQVDFVILCVGRF 161 (522)
Q Consensus 148 ~~~~d~lvvAtG~~ 161 (522)
++.++.+|-|||--
T Consensus 136 ~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 136 EIRAKVFIDATGDG 149 (428)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 89999999999953
No 161
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.69 E-value=4.6e-07 Score=97.49 Aligned_cols=141 Identities=20% Similarity=0.249 Sum_probs=84.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhc-CCceEEEecCCCc---c---ccccc---cc----------------cceeecCC--
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDI---G---GAWIK---TV----------------ETTMLQTP-- 54 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~-g~~v~i~e~~~~~---G---g~w~~---~~----------------~~~~~~~~-- 54 (522)
+.+|+||||||+||++|..|++. |++|+|||+.+.. | |.+.. .. .......+
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 47999999999999999999995 9999999998643 1 11111 00 00000000
Q ss_pred ---cccee---ecCCCCCCCCCC-CCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCC
Q 009917 55 ---KQLYQ---FSDYPWPDSVTT-DFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQP 127 (522)
Q Consensus 55 ---~~~~~---~~~~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 127 (522)
..+.. +.+.+......+ ...++..+.+.|.+.+.+.+..-.++++++|++++.+. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~--~--------------- 174 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDE--E--------------- 174 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECC--C---------------
Confidence 00000 000000000001 12245567777887777765322578899999998754 1
Q ss_pred CCCCCcEEEEEecCC---CCceeEEEeCEEEEeecccC
Q 009917 128 FGSRGKWTVAVEDAK---NHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 128 ~~~~~~~~v~~~~~~---~g~~~~~~~d~lvvAtG~~s 162 (522)
.....+|++++.+ +|+++++++|+||-|.|..|
T Consensus 175 --~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 175 --GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS 210 (634)
T ss_pred --CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch
Confidence 0134677776532 35557899999999999986
No 162
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.69 E-value=2.6e-07 Score=97.15 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=34.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
.+||+|||||..|+++|..|++.|++|+|+|+++-.+|
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 58999999999999999999999999999999854333
No 163
>PRK06996 hypothetical protein; Provisional
Probab=98.68 E-value=2e-07 Score=95.23 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=81.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhcC----CceEEEecCCCcc---c------------------cccc-ccc--ceeecC-
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKG----FHPIVFEARSDIG---G------------------AWIK-TVE--TTMLQT- 53 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g----~~v~i~e~~~~~G---g------------------~w~~-~~~--~~~~~~- 53 (522)
.++|+|||||++|+++|..|++.| ++|+|+|+.+... . .|.. ..+ ...+..
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 379999999999999999999986 4799999975321 0 1111 000 111100
Q ss_pred -Ccc--ceeecCCCCCCCCCCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCC
Q 009917 54 -PKQ--LYQFSDYPWPDSVTTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGS 130 (522)
Q Consensus 54 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (522)
... .+.+.++..+. .....+...+.+.|.+.+...++ .+.++++|++++...
T Consensus 91 ~~~g~~~~~~~~~~~~~--~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~~--------------------- 145 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPA--LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQDA--------------------- 145 (398)
T ss_pred CCCceEEecccccCCCc--CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeecC---------------------
Confidence 000 01111111110 01123556788888888887776 788899999987654
Q ss_pred CCcEEEEEecCCCCceeEEEeCEEEEeecc
Q 009917 131 RGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (522)
Q Consensus 131 ~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~ 160 (522)
+.+++++.+++ | .+++++|.||.|.|.
T Consensus 146 -~~v~v~~~~~~-g-~~~i~a~lvIgADG~ 172 (398)
T PRK06996 146 -DGVTLALGTPQ-G-ARTLRARIAVQAEGG 172 (398)
T ss_pred -CeEEEEECCCC-c-ceEEeeeEEEECCCC
Confidence 34778776542 2 257999999999995
No 164
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.68 E-value=3.3e-07 Score=93.45 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=84.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
+++++|||||+.|+..|..+.+.|.+|+|+|+.+.+- |. ..+++.+.
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL--------------------------p~-------~D~ei~~~ 219 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL--------------------------PG-------EDPEISKE 219 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------Cc-------CCHHHHHH
Confidence 3689999999999999999999999999999988742 11 12688999
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+..++.++ .++++++|+.++..+ +.-.++++++.+ .++++|.|++|+|
T Consensus 220 ~~~~l~~~gv--~i~~~~~v~~~~~~~----------------------~~v~v~~~~g~~---~~~~ad~vLvAiG--- 269 (454)
T COG1249 220 LTKQLEKGGV--KILLNTKVTAVEKKD----------------------DGVLVTLEDGEG---GTIEADAVLVAIG--- 269 (454)
T ss_pred HHHHHHhCCe--EEEccceEEEEEecC----------------------CeEEEEEecCCC---CEEEeeEEEEccC---
Confidence 9988888667 899999999998764 225677766532 2788999999999
Q ss_pred CCCCCCCC
Q 009917 163 DVPNIPEF 170 (522)
Q Consensus 163 ~~p~~P~~ 170 (522)
..|+...+
T Consensus 270 R~Pn~~~L 277 (454)
T COG1249 270 RKPNTDGL 277 (454)
T ss_pred CccCCCCC
Confidence 57887754
No 165
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.67 E-value=3.1e-07 Score=87.90 Aligned_cols=149 Identities=23% Similarity=0.312 Sum_probs=108.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
+++.+|||||..||..+.-..+.|.+||++|-.+.+|+.. ..|+..-
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m---------------------------------D~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM---------------------------------DGEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc---------------------------------CHHHHHH
Confidence 3689999999999999999999999999999988887531 1478888
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
++++..+.++ .+.++|+|+.++++. ++.-.|++.+..+++.++++||.|++|+|
T Consensus 258 ~qr~L~kQgi--kF~l~tkv~~a~~~~---------------------dg~v~i~ve~ak~~k~~tle~DvlLVsiG--- 311 (506)
T KOG1335|consen 258 FQRVLQKQGI--KFKLGTKVTSATRNG---------------------DGPVEIEVENAKTGKKETLECDVLLVSIG--- 311 (506)
T ss_pred HHHHHHhcCc--eeEeccEEEEeeccC---------------------CCceEEEEEecCCCceeEEEeeEEEEEcc---
Confidence 8888888888 899999999999876 34678889988888899999999999999
Q ss_pred CCCCCCCC--CCCCCCC-ccCceEEeeccCCCCchHhhhhccCCCEEEEEcCCCCHHHHHHH
Q 009917 163 DVPNIPEF--PPKKGPE-AFHGKVIHSMDYSDMDYEAAANLVKGKRVTVVGLQKSALDIAME 221 (522)
Q Consensus 163 ~~p~~P~~--p~~~g~~-~f~g~~~hs~~~~~~~~~~~~~~~~gk~VvVIG~G~sg~dia~~ 221 (522)
..|..-.+ ..+ |++ ++.|++.--.+|.. +--+|-+||--.-|-=+|..
T Consensus 312 RrP~t~GLgle~i-Gi~~D~r~rv~v~~~f~t----------~vP~i~~IGDv~~gpMLAhk 362 (506)
T KOG1335|consen 312 RRPFTEGLGLEKI-GIELDKRGRVIVNTRFQT----------KVPHIYAIGDVTLGPMLAHK 362 (506)
T ss_pred CcccccCCChhhc-ccccccccceeccccccc----------cCCceEEecccCCcchhhhh
Confidence 45655432 111 221 34455444333332 22356677755544444433
No 166
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.66 E-value=8.7e-07 Score=92.64 Aligned_cols=104 Identities=26% Similarity=0.338 Sum_probs=76.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|++|+.+|..|.+.|.+|+++|+.+.+. +.+ ..++.+++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~~--~~~~~~~l 227 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PTE--DAELSKEV 227 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------CcC--CHHHHHHH
Confidence 689999999999999999999999999999976531 111 24677777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ .+.++++|.+++... + ++...+...+ |+.+++.||.||+|+|.
T Consensus 228 ~~~l~~~gI--~i~~~~~v~~i~~~~--~------------------~~~~~~~~~~---g~~~~i~~D~vi~a~G~--- 279 (472)
T PRK05976 228 ARLLKKLGV--RVVTGAKVLGLTLKK--D------------------GGVLIVAEHN---GEEKTLEADKVLVSVGR--- 279 (472)
T ss_pred HHHHHhcCC--EEEeCcEEEEEEEec--C------------------CCEEEEEEeC---CceEEEEeCEEEEeeCC---
Confidence 777788888 899999999997521 0 1112222223 34457999999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+.+
T Consensus 280 ~p~~~ 284 (472)
T PRK05976 280 RPNTE 284 (472)
T ss_pred ccCCC
Confidence 56654
No 167
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.65 E-value=4.4e-07 Score=93.50 Aligned_cols=135 Identities=19% Similarity=0.281 Sum_probs=82.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-----cccceee-------cCCc-----------------
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-----TVETTML-------QTPK----------------- 55 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-----~~~~~~~-------~~~~----------------- 55 (522)
||+|||+|.|||+||..+++.|.+|+|+|+.+..||.-.. ..++... +++.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 7999999999999999999999999999999988874332 1111000 0000
Q ss_pred ------------------cceeecC--------CCCCCCC-C------------CCCCChhHHHHHHHHHHHhcCCccce
Q 009917 56 ------------------QLYQFSD--------YPWPDSV-T------------TDFPDHNQVLDYIQSYASHFDLRKHI 96 (522)
Q Consensus 56 ------------------~~~~~~~--------~~~~~~~-~------------~~~~~~~~~~~yl~~~~~~~~l~~~i 96 (522)
.-..|.. .+..... . .....+..+...+.+.+++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv--~i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGV--DI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTE--EE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCe--ee
Confidence 0000111 0000000 0 0112467788888888999997 89
Q ss_pred EeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 97 KFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 97 ~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+++++|+++..++ ..---|...+..+++...+.++.||+|||.+.
T Consensus 159 ~~~~~~~~Li~e~---------------------g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 159 RFNTRVTDLITED---------------------GRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp EESEEEEEEEEET---------------------TEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred eccceeeeEEEeC---------------------CceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 9999999999865 11123445543457778899999999999873
No 168
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.65 E-value=3.6e-07 Score=92.72 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
|.++||+|||||+.|+++|.+|++.|.+|+|+|++..
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 5668999999999999999999999999999999754
No 169
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.65 E-value=4.5e-07 Score=94.75 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=35.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC--ccc
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD--IGG 40 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~--~Gg 40 (522)
...||+|||+|.+|+++|..+++.|.+|+|+||.+. .||
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG 43 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG 43 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc
Confidence 358999999999999999999999999999999873 455
No 170
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.63 E-value=2.1e-07 Score=94.97 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCcc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~G 39 (522)
|. .||+|||||.+|+++|.+|++. |.+|+|+|+.+.+|
T Consensus 1 ~~-~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 1 AM-YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CC-ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 54 7999999999999999999998 99999999987554
No 171
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.61 E-value=1e-06 Score=91.96 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=77.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|++|+.+|..|.+.|.+|+++|+.+.+. + . ...++.+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------~-----~--~~~~~~~~~ 217 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL--------------------------P-----G--EDAEVSKVV 217 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--------------------------C-----C--CCHHHHHHH
Confidence 689999999999999999999999999999986531 1 0 114566777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.++++|.+++..+ +...+...+ |...++.+|.||+|+|.
T Consensus 218 ~~~l~~~gi--~i~~~~~v~~i~~~~----------------------~~v~v~~~~---g~~~~i~~D~vi~a~G~--- 267 (461)
T TIGR01350 218 AKALKKKGV--KILTNTKVTAVEKND----------------------DQVVYENKG---GETETLTGEKVLVAVGR--- 267 (461)
T ss_pred HHHHHHcCC--EEEeCCEEEEEEEeC----------------------CEEEEEEeC---CcEEEEEeCEEEEecCC---
Confidence 777888888 899999999998653 234454433 33357999999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 268 ~p~~~ 272 (461)
T TIGR01350 268 KPNTE 272 (461)
T ss_pred cccCC
Confidence 46655
No 172
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.60 E-value=8.9e-07 Score=93.12 Aligned_cols=39 Identities=36% Similarity=0.521 Sum_probs=36.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~ 41 (522)
..||||||+|.+|++||..+++.|.+|+|+|+.+.+||.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN 99 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence 469999999999999999999999999999999887773
No 173
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.60 E-value=7.2e-07 Score=91.64 Aligned_cols=35 Identities=29% Similarity=0.588 Sum_probs=32.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~ 38 (522)
+||+|||||..|+++|.+|++.|.+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 59999999999999999999999999999998643
No 174
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.58 E-value=9.1e-07 Score=88.79 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=37.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcC--CceEEEecCCCccc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGG 40 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g--~~v~i~e~~~~~Gg 40 (522)
|..+||+|||||..|+++|..|.+.+ .+|+|+||.+.+|.
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 66789999999999999999999987 99999999998874
No 175
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=2.2e-06 Score=89.44 Aligned_cols=103 Identities=24% Similarity=0.330 Sum_probs=79.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .+ ..++.+.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------~-----~~--~~~~~~~l 219 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL--------------------------P-----GE--DKEISKLA 219 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--------------------------C-----cC--CHHHHHHH
Confidence 689999999999999999999999999999976531 1 11 14677777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.++++|++++..+ +...+.+.++ ++.+++.||.||+|+|.
T Consensus 220 ~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g--g~~~~i~~D~vi~a~G~--- 270 (462)
T PRK06416 220 ERALKKRGI--KIKTGAKAKKVEQTD----------------------DGVTVTLEDG--GKEETLEADYVLVAVGR--- 270 (462)
T ss_pred HHHHHHcCC--EEEeCCEEEEEEEeC----------------------CEEEEEEEeC--CeeEEEEeCEEEEeeCC---
Confidence 888888888 899999999998654 2355655543 44467999999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 271 ~p~~~ 275 (462)
T PRK06416 271 RPNTE 275 (462)
T ss_pred ccCCC
Confidence 45554
No 176
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.57 E-value=8.7e-07 Score=93.21 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=34.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
.+||+|||||+.|+++|..|.++|++|+|+|+.+-.+|
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 47999999999999999999999999999999864333
No 177
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.57 E-value=7.8e-07 Score=90.41 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=31.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
+||+|||||.+|+++|.+|++.|.+|+|+|+.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 4899999999999999999999999999999653
No 178
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.55 E-value=7.1e-07 Score=90.53 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=76.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+. ..++..++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-------------------------------~~~~-~~~~~~~l 189 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-------------------------------ASLM-PPEVSSRL 189 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-------------------------------chhC-CHHHHHHH
Confidence 689999999999999999999999999999876532 0000 13566777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
.+..++.++ .+.++++|.+++... +.+.|++.++ +++.+|.||+|+|..
T Consensus 190 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 190 QHRLTEMGV--HLLLKSQLQGLEKTD----------------------SGIRATLDSG-----RSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHhCCC--EEEECCeEEEEEccC----------------------CEEEEEEcCC-----cEEECCEEEECcCCC
Confidence 777888888 888999999998643 3477777665 579999999999954
No 179
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.53 E-value=1.1e-06 Score=93.31 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=32.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
.+||+|||||..|+++|..|++.|++|+|+|+++-
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 47999999999999999999999999999999753
No 180
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.53 E-value=1.5e-06 Score=94.63 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=32.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~ 38 (522)
.+|+|||||.+|+++|.+|++.|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 58999999999999999999999999999998544
No 181
>PRK07121 hypothetical protein; Validated
Probab=98.52 E-value=1.6e-06 Score=91.21 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=35.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~ 41 (522)
..||+|||+|.+|++||.++++.|.+|+|+||.+..||.
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 379999999999999999999999999999999877763
No 182
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.52 E-value=3.7e-06 Score=87.95 Aligned_cols=104 Identities=28% Similarity=0.332 Sum_probs=79.1
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~~ 230 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AA--ADEQVAKEA 230 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999976531 11 124666777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ .+.++++|++++..+ +...+.+.++ +|+.+++.+|.||+|+| .
T Consensus 231 ~~~l~~~gi--~i~~~~~v~~i~~~~----------------------~~v~v~~~~~-~g~~~~i~~D~vl~a~G---~ 282 (475)
T PRK06327 231 AKAFTKQGL--DIHLGVKIGEIKTGG----------------------KGVSVAYTDA-DGEAQTLEVDKLIVSIG---R 282 (475)
T ss_pred HHHHHHcCc--EEEeCcEEEEEEEcC----------------------CEEEEEEEeC-CCceeEEEcCEEEEccC---C
Confidence 777777888 899999999998653 2244555443 24456799999999999 4
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+.+
T Consensus 283 ~p~~~ 287 (475)
T PRK06327 283 VPNTD 287 (475)
T ss_pred ccCCC
Confidence 56655
No 183
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.51 E-value=3.6e-06 Score=87.85 Aligned_cols=104 Identities=26% Similarity=0.297 Sum_probs=79.1
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|++.|.+|+|+|+.+.+. + .+ ..++.+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------~-----~~--d~~~~~~l 219 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL--------------------------P-----NE--DAEVSKEI 219 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------C-----cc--CHHHHHHH
Confidence 689999999999999999999999999999876531 1 11 24667778
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ .+.++++|++++..+ +...+++.. .+|..+++.+|.||+|+|.
T Consensus 220 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~-~~g~~~~i~~D~vi~a~G~--- 271 (466)
T PRK07818 220 AKQYKKLGV--KILTGTKVESIDDNG----------------------SKVTVTVSK-KDGKAQELEADKVLQAIGF--- 271 (466)
T ss_pred HHHHHHCCC--EEEECCEEEEEEEeC----------------------CeEEEEEEe-cCCCeEEEEeCEEEECcCc---
Confidence 888888898 899999999997643 234555542 1244457999999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 272 ~pn~~ 276 (466)
T PRK07818 272 APRVE 276 (466)
T ss_pred ccCCC
Confidence 56654
No 184
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.50 E-value=3.2e-06 Score=88.04 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=76.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + . ...++.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll--------------------------~-----~--~d~e~~~~l 217 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL--------------------------P-----G--EDEDIAHIL 217 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------c-----c--ccHHHHHHH
Confidence 689999999999999999999999999999876531 1 1 125677788
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ +++++++|.+++... . .+.+.+. ++..++.||.||+|+|.
T Consensus 218 ~~~L~~~GI--~i~~~~~V~~i~~~~----------------------~--~v~~~~~--g~~~~i~~D~vivA~G~--- 266 (458)
T PRK06912 218 REKLENDGV--KIFTGAALKGLNSYK----------------------K--QALFEYE--GSIQEVNAEFVLVSVGR--- 266 (458)
T ss_pred HHHHHHCCC--EEEECCEEEEEEEcC----------------------C--EEEEEEC--CceEEEEeCEEEEecCC---
Confidence 888888888 899999999997643 2 2333322 33357899999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 267 ~p~~~ 271 (458)
T PRK06912 267 KPRVQ 271 (458)
T ss_pred ccCCC
Confidence 56654
No 185
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.49 E-value=1e-06 Score=89.99 Aligned_cols=96 Identities=23% Similarity=0.300 Sum_probs=75.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.+. . ...++.+++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~--~~~~~~~~l 192 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR------------------------------N--APPPVQRYL 192 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh------------------------------h--cCHHHHHHH
Confidence 68999999999999999999999999999997654210 0 114667788
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
.+..++.++ ++.++++|++++. + +...+++.++ +++.+|.||+|+|..
T Consensus 193 ~~~l~~~GV--~i~~~~~V~~i~~-~----------------------~~~~v~l~~g-----~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 193 LQRHQQAGV--RILLNNAIEHVVD-G----------------------EKVELTLQSG-----ETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHCCC--EEEeCCeeEEEEc-C----------------------CEEEEEECCC-----CEEECCEEEECCCCC
Confidence 888888888 8999999999875 2 2245666555 479999999999953
No 186
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.49 E-value=1.9e-06 Score=89.93 Aligned_cols=103 Identities=16% Similarity=0.305 Sum_probs=78.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + . ...++..++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------~-----~--~d~~~~~~l 213 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL--------------------------P-----R--EEPEISAAV 213 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--------------------------C-----c--cCHHHHHHH
Confidence 689999999999999999999999999999976531 1 1 124667778
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.++++|.+++.++ +...+++... +..+++.+|.||+|+|.
T Consensus 214 ~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~--~~~~~i~~D~ViiA~G~--- 264 (463)
T TIGR02053 214 EEALAEEGI--EVVTSAQVKAVSVRG----------------------GGKIITVEKP--GGQGEVEADELLVATGR--- 264 (463)
T ss_pred HHHHHHcCC--EEEcCcEEEEEEEcC----------------------CEEEEEEEeC--CCceEEEeCEEEEeECC---
Confidence 888888888 899999999998653 2345555432 22257999999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 265 ~p~~~ 269 (463)
T TIGR02053 265 RPNTD 269 (463)
T ss_pred CcCCC
Confidence 56654
No 187
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.48 E-value=2.2e-06 Score=88.82 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=37.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhc----CCceEEEecCCCcccccc
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~----g~~v~i~e~~~~~Gg~w~ 43 (522)
++++|+|||||.|||+||..|.+. |.+|+|+|+++.+||...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 357999999999999999999995 689999999999999654
No 188
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.48 E-value=6.4e-07 Score=88.78 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=73.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEE-ecCCCccccccccccceeecCC-----------cc--------ceeecCC-
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVF-EARSDIGGAWIKTVETTMLQTP-----------KQ--------LYQFSDY- 63 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~-e~~~~~Gg~w~~~~~~~~~~~~-----------~~--------~~~~~~~- 63 (522)
||+|||||.||+.||..+++.|.+|+++ .+.+.+|..- |.|++.-.-. .. ..+|...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~--Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS--CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S--SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc--chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 7999999999999999999999999999 4444454321 2222221100 00 0001100
Q ss_pred -C-CCCCC-CCCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEe
Q 009917 64 -P-WPDSV-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVE 139 (522)
Q Consensus 64 -~-~~~~~-~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 139 (522)
. -|..+ ...-..+..+.+++++.++.. ++ .+ ++++|+++..++ +..+-|.+.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl--~i-~~~~V~~l~~e~---------------------~~v~GV~~~ 134 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNL--TI-IQGEVTDLIVEN---------------------GKVKGVVTK 134 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTE--EE-EES-EEEEEECT---------------------TEEEEEEET
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCe--EE-EEcccceEEecC---------------------CeEEEEEeC
Confidence 0 01010 111346678888888888774 44 34 577999998765 233556666
Q ss_pred cCCCCceeEEEeCEEEEeeccc
Q 009917 140 DAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 140 ~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
++ +.+.+|.||+|||.+
T Consensus 135 ~g-----~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 135 DG-----EEIEADAVVLATGTF 151 (392)
T ss_dssp TS-----EEEEECEEEE-TTTG
T ss_pred CC-----CEEecCEEEEecccc
Confidence 65 689999999999964
No 189
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.48 E-value=2.3e-06 Score=89.25 Aligned_cols=106 Identities=24% Similarity=0.323 Sum_probs=79.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. +.+ ..++.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~~--d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PGT--DTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CCC--CHHHHHH
Confidence 3789999999999999999999999999999876541 111 1456677
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+..++.++ ++.++++|.+++..+ +...+++.+..++..+++.+|.||+|+|.
T Consensus 221 l~~~l~~~gV--~i~~~~~V~~i~~~~----------------------~~v~v~~~~~~~g~~~~i~~D~vi~a~G~-- 274 (466)
T PRK06115 221 LQKALTKQGM--KFKLGSKVTGATAGA----------------------DGVSLTLEPAAGGAAETLQADYVLVAIGR-- 274 (466)
T ss_pred HHHHHHhcCC--EEEECcEEEEEEEcC----------------------CeEEEEEEEcCCCceeEEEeCEEEEccCC--
Confidence 7777788888 899999999998643 23455554322244467999999999994
Q ss_pred CCCCCC
Q 009917 163 DVPNIP 168 (522)
Q Consensus 163 ~~p~~P 168 (522)
.|+..
T Consensus 275 -~pn~~ 279 (466)
T PRK06115 275 -RPYTQ 279 (466)
T ss_pred -ccccc
Confidence 45543
No 190
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.47 E-value=1.9e-06 Score=89.25 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=75.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + . ...++.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------~-----~--~~~~~~~~~ 204 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL--------------------------P-----R--EEPSVAALA 204 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC--------------------------C-----C--CCHHHHHHH
Confidence 689999999999999999999999999999976531 0 0 124667777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.++++|++++..+ +...++ .++ .++.||.||+|+|.
T Consensus 205 ~~~l~~~GI--~i~~~~~V~~i~~~~----------------------~~v~v~-~~g-----~~i~~D~viva~G~--- 251 (438)
T PRK07251 205 KQYMEEDGI--TFLLNAHTTEVKNDG----------------------DQVLVV-TED-----ETYRFDALLYATGR--- 251 (438)
T ss_pred HHHHHHcCC--EEEcCCEEEEEEecC----------------------CEEEEE-ECC-----eEEEcCEEEEeeCC---
Confidence 788888888 899999999998643 223333 222 47899999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 252 ~p~~~ 256 (438)
T PRK07251 252 KPNTE 256 (438)
T ss_pred CCCcc
Confidence 56654
No 191
>PRK07208 hypothetical protein; Provisional
Probab=98.47 E-value=3.5e-07 Score=96.03 Aligned_cols=44 Identities=39% Similarity=0.567 Sum_probs=41.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
|++++|+|||||++||++|..|.+.|++|+|+|+++.+||.+..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 55689999999999999999999999999999999999998765
No 192
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=1.5e-07 Score=97.22 Aligned_cols=43 Identities=40% Similarity=0.684 Sum_probs=39.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
.+++|+|||||.|||+||++|.+.|++|+|+|.++.+||.-+.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEE
Confidence 4679999999999999999999999999999999999996554
No 193
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=1.6e-06 Score=92.64 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=35.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCccc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG 40 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg 40 (522)
|...||+|||||.|||+||..+++. |.+|+|+||....||
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 6668999999999999999999986 489999999876554
No 194
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.45 E-value=1.6e-06 Score=86.42 Aligned_cols=93 Identities=24% Similarity=0.348 Sum_probs=77.2
Q ss_pred CcEEEECCChhHHHHHHHHHhc-------------CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK-------------GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVT 70 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~-------------g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (522)
.+|+|||||+.|+.+|..|.+. .++|+++|+.+.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 3699999999999999999873 13899999988752
Q ss_pred CCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEE
Q 009917 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (522)
Q Consensus 71 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~ 150 (522)
+.|+ +++.+|.++..++.|+ .+++++.|++|+.+. |++.+++ +++.
T Consensus 205 p~~~--~~l~~~a~~~L~~~GV--~v~l~~~Vt~v~~~~--------------------------v~~~~g~----~~I~ 250 (405)
T COG1252 205 PMFP--PKLSKYAERALEKLGV--EVLLGTPVTEVTPDG--------------------------VTLKDGE----EEIP 250 (405)
T ss_pred cCCC--HHHHHHHHHHHHHCCC--EEEcCCceEEECCCc--------------------------EEEccCC----eeEe
Confidence 2232 5788999999999999 999999999999875 7777763 2699
Q ss_pred eCEEEEeeccc
Q 009917 151 VDFVILCVGRF 161 (522)
Q Consensus 151 ~d~lvvAtG~~ 161 (522)
++.+|-|+|..
T Consensus 251 ~~tvvWaaGv~ 261 (405)
T COG1252 251 ADTVVWAAGVR 261 (405)
T ss_pred cCEEEEcCCCc
Confidence 99999999976
No 195
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.44 E-value=3.1e-06 Score=90.54 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=32.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
||+|||+|.||++||..+++.|.+|+|+|+....||
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999999999999999875443
No 196
>PRK06370 mercuric reductase; Validated
Probab=98.44 E-value=6e-06 Score=86.17 Aligned_cols=103 Identities=18% Similarity=0.316 Sum_probs=78.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+++
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 218 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------------------PR--EDEDVAAAV 218 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999976542 00 124667778
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.++++|.+++..+ +...|.+... +...++.+|.||+|+|.
T Consensus 219 ~~~l~~~GV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~~--~~~~~i~~D~Vi~A~G~--- 269 (463)
T PRK06370 219 REILEREGI--DVRLNAECIRVERDG----------------------DGIAVGLDCN--GGAPEITGSHILVAVGR--- 269 (463)
T ss_pred HHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEEEeC--CCceEEEeCEEEECcCC---
Confidence 888888888 899999999998653 2244554322 12257899999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 270 ~pn~~ 274 (463)
T PRK06370 270 VPNTD 274 (463)
T ss_pred CcCCC
Confidence 55654
No 197
>PRK06116 glutathione reductase; Validated
Probab=98.44 E-value=2.6e-06 Score=88.64 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=79.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. -..++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~~--~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------RG--FDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999876431 01 11467777
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+..++.++ ++.++++|.+++..+ ++...|.+.++ +++.+|.||+|+|.
T Consensus 214 l~~~L~~~GV--~i~~~~~V~~i~~~~---------------------~g~~~v~~~~g-----~~i~~D~Vv~a~G~-- 263 (450)
T PRK06116 214 LVEEMEKKGI--RLHTNAVPKAVEKNA---------------------DGSLTLTLEDG-----ETLTVDCLIWAIGR-- 263 (450)
T ss_pred HHHHHHHCCc--EEECCCEEEEEEEcC---------------------CceEEEEEcCC-----cEEEeCEEEEeeCC--
Confidence 8888888888 899999999998753 22355666554 46899999999994
Q ss_pred CCCCCC
Q 009917 163 DVPNIP 168 (522)
Q Consensus 163 ~~p~~P 168 (522)
.|+..
T Consensus 264 -~p~~~ 268 (450)
T PRK06116 264 -EPNTD 268 (450)
T ss_pred -CcCCC
Confidence 56654
No 198
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.44 E-value=2.1e-06 Score=91.42 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
+.+|+|||||++||++|..|++.|++|+|||+.+
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3689999999999999999999999999999975
No 199
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.44 E-value=2.9e-07 Score=96.15 Aligned_cols=55 Identities=25% Similarity=0.421 Sum_probs=47.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-cccceeecCCc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPK 55 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-~~~~~~~~~~~ 55 (522)
|..+||||||||++||++|..|+++|++|+|+||++.+||..+. .+.+.+.++-.
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~ 56 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGP 56 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCc
Confidence 66789999999999999999999999999999999999996665 45566655543
No 200
>PLN02985 squalene monooxygenase
Probab=98.43 E-value=5.1e-06 Score=87.23 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
..||+|||||++|+++|..|.+.|++|+|+|+..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3689999999999999999999999999999875
No 201
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.43 E-value=2.8e-06 Score=87.08 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=37.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccc
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~ 43 (522)
+..||+|||||..|+.+|..++.+|++|+++|+++--.|+-.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 458999999999999999999999999999999987666544
No 202
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.42 E-value=3.4e-06 Score=90.77 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=33.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G 39 (522)
.||+|||+|.|||+||..+++.|.+|+|+|+....|
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 699999999999999999999999999999987544
No 203
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.42 E-value=1.9e-06 Score=87.56 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=32.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
|+ +||+|||+|.+|+++|..|.+.|.+|+|||+..
T Consensus 1 ~~-~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MK-FDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CC-CCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 44 799999999999999999999999999999864
No 204
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.42 E-value=2.9e-06 Score=88.60 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. -..++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------------------SF--LDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999976542 00 12567777
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+..++.++ ++.++++|++++..+ +.+.+++.++ .++.+|.||+|+|.
T Consensus 222 l~~~l~~~gI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~vi~a~G~-- 270 (461)
T PRK05249 222 LSYHLRDSGV--TIRHNEEVEKVEGGD----------------------DGVIVHLKSG-----KKIKADCLLYANGR-- 270 (461)
T ss_pred HHHHHHHcCC--EEEECCEEEEEEEeC----------------------CeEEEEECCC-----CEEEeCEEEEeecC--
Confidence 8777888888 889999999998653 2356665544 46899999999994
Q ss_pred CCCCCC
Q 009917 163 DVPNIP 168 (522)
Q Consensus 163 ~~p~~P 168 (522)
.|+..
T Consensus 271 -~p~~~ 275 (461)
T PRK05249 271 -TGNTD 275 (461)
T ss_pred -Ccccc
Confidence 45543
No 205
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.42 E-value=6.4e-06 Score=88.14 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=36.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
|.+.||+|||+|.|||+||..+++.|.+|+|+|+.+..||
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 7788999999999999999999999999999998876543
No 206
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.41 E-value=2.8e-06 Score=84.45 Aligned_cols=50 Identities=26% Similarity=0.477 Sum_probs=43.6
Q ss_pred cCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 90 FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 90 ~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
.+. .+.++++|+++++.. ++.|.|++.+..+++..++.+++|+|+.|..+
T Consensus 195 ~~~--~~~~~~eV~~i~r~~---------------------dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 195 KGF--ELHLNHEVTDIKRNG---------------------DGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred CCc--EEEecCEeCeeEECC---------------------CCCEEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 366 899999999999976 56799999987778888999999999999874
No 207
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.41 E-value=1.9e-07 Score=71.82 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=32.4
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccceeecCC
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDY 246 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~ 246 (522)
||+|||+|.+|+|+|..|+..+. +||++.|++... |..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~-~~~ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL-PGF 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS-TTS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh-hhc
Confidence 69999999999999999999775 599999998733 443
No 208
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.41 E-value=3.6e-06 Score=89.65 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=34.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.|||+||..+.+.|.+|+|+||.+..+|
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 37999999999999999999999999999999865444
No 209
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.40 E-value=4.6e-06 Score=86.83 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=31.2
Q ss_pred CcEEEECCChhHHHHHHHHHhc--CCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~ 37 (522)
.||+|||||.+|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 4899999999999999999996 899999999653
No 210
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=5.6e-06 Score=88.61 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=33.3
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
.||+|||+|.|||+||..+++.|.+|+|+|+....+|
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 6999999999999999999999999999999754443
No 211
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=4.1e-06 Score=90.28 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G 39 (522)
..||+|||||.|||+||..+++.|.+|+|+|+...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3699999999999999999999999999999876554
No 212
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.39 E-value=5.1e-06 Score=86.07 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=32.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCcc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~G 39 (522)
..||+|||||.+|+++|..|++. +.+|+|+||.+.+|
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 36999999999999999999997 89999999944443
No 213
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.38 E-value=4.3e-06 Score=88.84 Aligned_cols=134 Identities=11% Similarity=0.048 Sum_probs=80.3
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC-cccccccccccee-----ecCCc----------------------
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD-IGGAWIKTVETTM-----LQTPK---------------------- 55 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~-~Gg~w~~~~~~~~-----~~~~~---------------------- 55 (522)
.||+|||+|.|||+||..+ +.|.+|+|+|+... .||.-...-.+.. -+++.
T Consensus 8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~~ 86 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEIL 86 (543)
T ss_pred cCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6999999999999999999 89999999999764 4442111000000 00000
Q ss_pred --------cceeecCCCCCCCC----------CCCC--------CChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcC
Q 009917 56 --------QLYQFSDYPWPDSV----------TTDF--------PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEG 109 (522)
Q Consensus 56 --------~~~~~~~~~~~~~~----------~~~~--------~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~ 109 (522)
..+.--..++.... ...+ .++.++...|.+.+.+.++ .+.+++.|+++..++
T Consensus 87 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~t~v~~Li~~~ 164 (543)
T PRK06263 87 VKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERI--KILEEVMAIKLIVDE 164 (543)
T ss_pred HHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCC--EEEeCeEeeeeEEeC
Confidence 00000011121000 0001 1356777888887877788 899999999987653
Q ss_pred CCCcccccccccCCCCCCCCCCC-cEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 110 LSGEDEKSWSFWNGNGQPFGSRG-KWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
++ ..-|...+..+++...+.++.||+|||.+
T Consensus 165 ---------------------~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 165 ---------------------NREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred ---------------------CcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 11 12233333223555678999999999987
No 214
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.38 E-value=4.2e-06 Score=86.83 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=77.3
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++.+.+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~~--d~~~~~~l 213 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RGF--DDDMRALL 213 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------ccc--CHHHHHHH
Confidence 689999999999999999999999999999876531 111 14677777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.++++|.+++..+ +...|++.++ .++.+|.||+|+|.
T Consensus 214 ~~~l~~~gV--~i~~~~~v~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~viva~G~--- 261 (446)
T TIGR01424 214 ARNMEGRGI--RIHPQTSLTSITKTD----------------------DGLKVTLSHG-----EEIVADVVLFATGR--- 261 (446)
T ss_pred HHHHHHCCC--EEEeCCEEEEEEEcC----------------------CeEEEEEcCC-----cEeecCEEEEeeCC---
Confidence 777888888 899999999998643 2255665544 47999999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 262 ~pn~~ 266 (446)
T TIGR01424 262 SPNTK 266 (446)
T ss_pred CcCCC
Confidence 45543
No 215
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.38 E-value=4.9e-06 Score=86.31 Aligned_cols=102 Identities=24% Similarity=0.292 Sum_probs=77.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~~--d~~~~~~~ 213 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RSF--DSMISETI 213 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------ccc--CHHHHHHH
Confidence 689999999999999999999999999999986542 111 14567777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.++++|++++... ++...+.+.++ .+.+.+|.||+|+|.
T Consensus 214 ~~~l~~~gI--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g----~~~i~~D~vi~a~G~--- 263 (450)
T TIGR01421 214 TEEYEKEGI--NVHKLSKPVKVEKTV---------------------EGKLVIHFEDG----KSIDDVDELIWAIGR--- 263 (450)
T ss_pred HHHHHHcCC--EEEcCCEEEEEEEeC---------------------CceEEEEECCC----cEEEEcCEEEEeeCC---
Confidence 777788888 899999999998643 12234555443 146899999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 264 ~pn~~ 268 (450)
T TIGR01421 264 KPNTK 268 (450)
T ss_pred CcCcc
Confidence 56654
No 216
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.37 E-value=7.2e-06 Score=86.94 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=34.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.|||+||..+++.|.+|+|+|+....||
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 47999999999999999999999999999999876544
No 217
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.37 E-value=2.8e-06 Score=89.02 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=33.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.|||+||..+.+.|. |+|+||.+..||
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g 38 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG 38 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC
Confidence 3699999999999999999999997 999999876554
No 218
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.37 E-value=3.9e-06 Score=87.18 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=31.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhc-C-CceEEEecCCCc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK-G-FHPIVFEARSDI 38 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~-g-~~v~i~e~~~~~ 38 (522)
..||+|||||..|+++|..|++. + .+|+|+|+.+.+
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~ 82 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDF 82 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcch
Confidence 37999999999999999999996 4 699999998643
No 219
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.37 E-value=4.7e-06 Score=84.23 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=31.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
+||+|||||.+|+++|.+|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999999999999999753
No 220
>PRK08275 putative oxidoreductase; Provisional
Probab=98.36 E-value=2.4e-06 Score=90.93 Aligned_cols=133 Identities=16% Similarity=0.189 Sum_probs=80.8
Q ss_pred CcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCc-cccccc--------cccceeecCCccce--------------
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI-GGAWIK--------TVETTMLQTPKQLY-------------- 58 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~-Gg~w~~--------~~~~~~~~~~~~~~-------------- 58 (522)
.||+|||+|.||++||..+++. |.+|+|+||.+.. ||.... ..++ .+++...+
T Consensus 10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~--~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPG--HATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccC--CCCHHHHHHHHHHhcCCCccHH
Confidence 6999999999999999999986 6899999998753 222111 0010 01110000
Q ss_pred ----------------eecCCCCCCCC-----------CC----CCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEE
Q 009917 59 ----------------QFSDYPWPDSV-----------TT----DFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEF 107 (522)
Q Consensus 59 ----------------~~~~~~~~~~~-----------~~----~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~ 107 (522)
.--..++.... .. ...++..+.+.|.+.+++.++ .+.+++.|+++..
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~~~v~~Li~ 165 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARV--LITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCC--EEEcceEEEEEEE
Confidence 00001111000 00 012456788888888888888 8999999999976
Q ss_pred cCCCCcccccccccCCCCCCCCCCCc-EEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 108 EGLSGEDEKSWSFWNGNGQPFGSRGK-WTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
++ +++ .-|...+..+|+...+.++.||+|||.+
T Consensus 166 ~~---------------------~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 166 DA---------------------DGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred cC---------------------CCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 52 111 1123223223555678999999999976
No 221
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.36 E-value=3.6e-06 Score=87.98 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=75.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc--ccccc----ccee---ecCCcc---------ceeecCCC-
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA--WIKTV----ETTM---LQTPKQ---------LYQFSDYP- 64 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~--w~~~~----~~~~---~~~~~~---------~~~~~~~~- 64 (522)
+||+|||||++|+.+|..+++.|.+|+++|++...+|. |.... .+.. ++..-. ..+|....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 48999999999999999999999999999987543332 11100 1100 000000 00111110
Q ss_pred --CCCCC-CCCCCChhHHHHHHHHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEec
Q 009917 65 --WPDSV-TTDFPDHNQVLDYIQSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVED 140 (522)
Q Consensus 65 --~~~~~-~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 140 (522)
-|..+ ...-.....+...+++.+++. ++ .+ +..+|+.+.... ++....|.+.+
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV--~I-le~~Vv~li~e~--------------------~g~V~GV~t~~ 137 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNL--SL-FQGEVEDLILED--------------------NDEIKGVVTQD 137 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCc--EE-EEeEEEEEEEec--------------------CCcEEEEEECC
Confidence 01000 111234556667777777776 44 33 456787776542 01234566655
Q ss_pred CCCCceeEEEeCEEEEeeccc
Q 009917 141 AKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 141 ~~~g~~~~~~~d~lvvAtG~~ 161 (522)
+ ..+.+|.||+|||.+
T Consensus 138 G-----~~I~Ad~VILATGtf 153 (617)
T TIGR00136 138 G-----LKFRAKAVIITTGTF 153 (617)
T ss_pred C-----CEEECCEEEEccCcc
Confidence 4 479999999999976
No 222
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.35 E-value=4.6e-06 Score=89.56 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=34.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.|||+||..+++.|.+|+|+||....+|
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 36999999999999999999999999999999876555
No 223
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.34 E-value=4e-06 Score=89.93 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=32.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSD 37 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~ 37 (522)
..||+|||+|.|||+||..+++. |.+|+|+||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 36999999999999999999998 999999999864
No 224
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.34 E-value=6.2e-06 Score=88.68 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
.+||+|||||..|.++|..|.+.|++|+|+|+++-.+|
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 37999999999999999999999999999999854333
No 225
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.33 E-value=6.8e-06 Score=85.69 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=32.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCc
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI 38 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~ 38 (522)
.+.||+|||||+.|+++|..|.+. |.+|+|+||.+.+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 357999999999999999999984 7899999998654
No 226
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.33 E-value=5.6e-06 Score=86.24 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=32.1
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
+||+|||||.|||+||..+++.|.+|+|+|+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999764
No 227
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.33 E-value=7.7e-06 Score=85.37 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=75.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. +.+ ..++.+++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~~--d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PAA--DKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------CcC--CHHHHHHH
Confidence 689999999999999999999999999999987542 111 14566666
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++. + .+.++++|..++..+ +...+++.++. ++.+++.+|.||+|+|.
T Consensus 222 ~~~l~~~-v--~i~~~~~v~~i~~~~----------------------~~~~v~~~~~~-~~~~~i~~D~vi~a~G~--- 272 (471)
T PRK06467 222 TKRIKKQ-F--NIMLETKVTAVEAKE----------------------DGIYVTMEGKK-APAEPQRYDAVLVAVGR--- 272 (471)
T ss_pred HHHHhhc-e--EEEcCCEEEEEEEcC----------------------CEEEEEEEeCC-CcceEEEeCEEEEeecc---
Confidence 6666555 6 788899999988643 23455554432 33357999999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 273 ~pn~~ 277 (471)
T PRK06467 273 VPNGK 277 (471)
T ss_pred cccCC
Confidence 56654
No 228
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.33 E-value=6.5e-06 Score=88.46 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=34.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
.||+|||+|.|||+||..+++.|.+|+|+||....+|
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 6999999999999999999999999999999875554
No 229
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.33 E-value=5.3e-06 Score=85.72 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=73.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|++|+.+|..|++.|.+|+++++.+.+. .+.+ ..++.+++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~------------------------------~~~~--~~~~~~~~ 185 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL------------------------------NKLF--DEEMNQIV 185 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC------------------------------cccc--CHHHHHHH
Confidence 689999999999999999999999999999876531 0111 14667788
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
.+..++.++ ++.++++|.+++.++ .. +.+.++ +++.||.||+|+|..
T Consensus 186 ~~~l~~~gV--~v~~~~~v~~i~~~~-----------------------~~-v~~~~g-----~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 186 EEELKKHEI--NLRLNEEVDSIEGEE-----------------------RV-KVFTSG-----GVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHcCC--EEEeCCEEEEEecCC-----------------------CE-EEEcCC-----CEEEeCEEEECCCcc
Confidence 888888898 899999999997543 12 344444 469999999999953
No 230
>PRK07846 mycothione reductase; Reviewed
Probab=98.32 E-value=6.9e-06 Score=85.17 Aligned_cols=100 Identities=21% Similarity=0.349 Sum_probs=73.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999976531 00 11455666
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+..+ .++ +++++++|.+++..+ +...|++.++ +++.+|.||+|+|.
T Consensus 213 l~~l~~-~~v--~i~~~~~v~~i~~~~----------------------~~v~v~~~~g-----~~i~~D~vl~a~G~-- 260 (451)
T PRK07846 213 FTELAS-KRW--DVRLGRNVVGVSQDG----------------------SGVTLRLDDG-----STVEADVLLVATGR-- 260 (451)
T ss_pred HHHHHh-cCe--EEEeCCEEEEEEEcC----------------------CEEEEEECCC-----cEeecCEEEEEECC--
Confidence 665443 456 788899999997643 2344555443 47999999999994
Q ss_pred CCCCCC
Q 009917 163 DVPNIP 168 (522)
Q Consensus 163 ~~p~~P 168 (522)
.|+.+
T Consensus 261 -~pn~~ 265 (451)
T PRK07846 261 -VPNGD 265 (451)
T ss_pred -ccCcc
Confidence 56654
No 231
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.32 E-value=7e-06 Score=85.62 Aligned_cols=100 Identities=16% Similarity=0.264 Sum_probs=77.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++.+++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PGE--DADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CCC--CHHHHHHH
Confidence 589999999999999999999999999999876532 111 24567788
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.++++|.+++..+ +...|.+.++ +++.+|.||+|+|.
T Consensus 225 ~~~L~~~gV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~g-----~~l~~D~vl~a~G~--- 272 (466)
T PRK07845 225 EEVFARRGM--TVLKRSRAESVERTG----------------------DGVVVTLTDG-----RTVEGSHALMAVGS--- 272 (466)
T ss_pred HHHHHHCCc--EEEcCCEEEEEEEeC----------------------CEEEEEECCC-----cEEEecEEEEeecC---
Confidence 888888888 899999999997643 2355655444 46899999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 273 ~pn~~ 277 (466)
T PRK07845 273 VPNTA 277 (466)
T ss_pred CcCCC
Confidence 45654
No 232
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.32 E-value=4.6e-06 Score=78.17 Aligned_cols=41 Identities=34% Similarity=0.571 Sum_probs=36.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
..|+|||+|.|||+++..+...|-.|+++|+...+||.-..
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 46999999999999999999987779999999999996543
No 233
>PLN02507 glutathione reductase
Probab=98.31 E-value=7.1e-06 Score=86.06 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=77.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+|+++.+.+- +. -..++.+++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 250 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAVV 250 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876421 11 125677888
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.++++|.+++..+ +...|...++ +++.+|.|++|+|.
T Consensus 251 ~~~l~~~GI--~i~~~~~V~~i~~~~----------------------~~~~v~~~~g-----~~i~~D~vl~a~G~--- 298 (499)
T PLN02507 251 ARNLEGRGI--NLHPRTNLTQLTKTE----------------------GGIKVITDHG-----EEFVADVVLFATGR--- 298 (499)
T ss_pred HHHHHhCCC--EEEeCCEEEEEEEeC----------------------CeEEEEECCC-----cEEEcCEEEEeecC---
Confidence 888888888 899999999998643 2345554443 46999999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 299 ~pn~~ 303 (499)
T PLN02507 299 APNTK 303 (499)
T ss_pred CCCCC
Confidence 45554
No 234
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.31 E-value=8e-06 Score=84.15 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=33.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.|||+||..+. .|.+|+|+||.+..||
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 379999999999999999984 6999999999887665
No 235
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.31 E-value=4e-06 Score=86.76 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=74.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . -..++.+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------------------~--~d~~~~~~l 195 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-------------------------------L--MDADMNQPI 195 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-------------------------------h--cCHHHHHHH
Confidence 6899999999999999999999999999999765421 0 114677777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ .++++++|.+++.. .|++.++ +++.+|.|++|+|.
T Consensus 196 ~~~l~~~gI--~i~~~~~v~~i~~~--------------------------~v~~~~g-----~~~~~D~vl~a~G~--- 239 (438)
T PRK13512 196 LDELDKREI--PYRLNEEIDAINGN--------------------------EVTFKSG-----KVEHYDMIIEGVGT--- 239 (438)
T ss_pred HHHHHhcCC--EEEECCeEEEEeCC--------------------------EEEECCC-----CEEEeCEEEECcCC---
Confidence 888888888 89999999988632 3555554 46899999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+.+
T Consensus 240 ~pn~~ 244 (438)
T PRK13512 240 HPNSK 244 (438)
T ss_pred CcChH
Confidence 45543
No 236
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.31 E-value=6.3e-06 Score=88.08 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.|||+||..+++.|.+|+|+|+....+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 36999999999999999999999999999999865544
No 237
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.30 E-value=1.3e-05 Score=86.01 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=33.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
.||+|||||.|||+||..+++.|.+|+|+||....+|
T Consensus 13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 6999999999999999999999999999999865443
No 238
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.29 E-value=9.8e-06 Score=86.02 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=37.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
..||||||+| +|++||..+++.|.+|+|+|+.+.+||+...
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 4799999999 8999999999999999999999999986553
No 239
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.29 E-value=1.5e-05 Score=82.15 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCc
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~ 38 (522)
+|+|||||.+|+++|.+|++.|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 7999999999999999999999999999997544
No 240
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.28 E-value=1.1e-05 Score=86.38 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=33.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcC---CceEEEecCCCccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKG---FHPIVFEARSDIGG 40 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g---~~v~i~e~~~~~Gg 40 (522)
.||+|||+|.|||+||..+++.| .+|+|+||....||
T Consensus 6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 69999999999999999999998 89999999876554
No 241
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.27 E-value=1.1e-05 Score=83.68 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=75.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++++.+. +.+ ..++.+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~~l 205 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PRE--DRDIADNI 205 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CCc--CHHHHHHH
Confidence 689999999999999999999999999999976531 111 24667778
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ .+.++++|.+++..+ +...+...+ .++.+|.||+|+|.
T Consensus 206 ~~~l~~~gV--~v~~~~~v~~i~~~~----------------------~~v~v~~~~------g~i~~D~vl~a~G~--- 252 (441)
T PRK08010 206 ATILRDQGV--DIILNAHVERISHHE----------------------NQVQVHSEH------AQLAVDALLIASGR--- 252 (441)
T ss_pred HHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEEcC------CeEEeCEEEEeecC---
Confidence 888888888 899999999998653 224444322 24789999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 253 ~pn~~ 257 (441)
T PRK08010 253 QPATA 257 (441)
T ss_pred CcCCC
Confidence 45543
No 242
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.27 E-value=9.8e-06 Score=76.73 Aligned_cols=139 Identities=23% Similarity=0.317 Sum_probs=92.1
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc--cc---------------------------cccc--cccceeec
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI--GG---------------------------AWIK--TVETTMLQ 52 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~--Gg---------------------------~w~~--~~~~~~~~ 52 (522)
.+|+|||||.-|+++|.+|+++|.+++++|+-+-+ -| .|+. ...+..+.
T Consensus 8 ~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~~~ 87 (399)
T KOG2820|consen 8 RDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKLH 87 (399)
T ss_pred eeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhceeec
Confidence 68999999999999999999999999999986522 11 1111 00000000
Q ss_pred CCc--------------------------c--------ceeec-CCCCCCCC------CCCCCChhHHHHHHHHHHHhcC
Q 009917 53 TPK--------------------------Q--------LYQFS-DYPWPDSV------TTDFPDHNQVLDYIQSYASHFD 91 (522)
Q Consensus 53 ~~~--------------------------~--------~~~~~-~~~~~~~~------~~~~~~~~~~~~yl~~~~~~~~ 91 (522)
.+. + --.|+ ..++++.| ...+........-++.++++.|
T Consensus 88 ~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G 167 (399)
T KOG2820|consen 88 CGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARELG 167 (399)
T ss_pred ccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHHcC
Confidence 000 0 00233 44555544 3445556777788899999999
Q ss_pred CccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCCCCCCCC
Q 009917 92 LRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPE 169 (522)
Q Consensus 92 l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~ 169 (522)
. -++.+.+|..+...+ ++ +....|.+.++ ..+.++.+|+++|++ ....+|.
T Consensus 168 ~--i~~dg~~v~~~~~~~--e~-----------------~~~v~V~Tt~g-----s~Y~akkiI~t~GaW-i~klL~~ 218 (399)
T KOG2820|consen 168 V--IFRDGEKVKFIKFVD--EE-----------------GNHVSVQTTDG-----SIYHAKKIIFTVGAW-INKLLPT 218 (399)
T ss_pred e--EEecCcceeeEeecc--CC-----------------CceeEEEeccC-----CeeecceEEEEecHH-HHhhcCc
Confidence 8 789999999998765 11 22355666665 468999999999998 4555553
No 243
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.27 E-value=1.2e-05 Score=86.77 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=33.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G 39 (522)
..||+|||+|.|||+||..+++.|.+|+|+|+.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 3799999999999999999999999999999876543
No 244
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.27 E-value=1.9e-05 Score=74.13 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=30.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhc-CC-ceEEEecCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK-GF-HPIVFEARSD 37 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~-g~-~v~i~e~~~~ 37 (522)
+++|+|||||.+|+++|..+.++ |. +|.|+|..++
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 46899999999999999999884 54 6999998765
No 245
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.27 E-value=7.5e-06 Score=85.05 Aligned_cols=96 Identities=23% Similarity=0.271 Sum_probs=73.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + ..+ ..++.+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------~----~~~--~~~~~~~l 197 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL--------------------------P----DSF--DKEITDVM 197 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC--------------------------c----hhc--CHHHHHHH
Confidence 689999999999999999999999999999876431 0 011 25778888
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
.+.+++.++ +++++++|.+++.++ ....+...+ .++.||.||+|+|..
T Consensus 198 ~~~l~~~gI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~------~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 198 EEELRENGV--ELHLNEFVKSLIGED----------------------KVEGVVTDK------GEYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHCCC--EEEcCCEEEEEecCC----------------------cEEEEEeCC------CEEEcCEEEECcCCC
Confidence 888889998 899999999996432 223343322 358999999999943
No 246
>PTZ00058 glutathione reductase; Provisional
Probab=98.26 E-value=1.1e-05 Score=85.18 Aligned_cols=103 Identities=22% Similarity=0.372 Sum_probs=77.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ .+++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RKF--DETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------ccC--CHHHHHH
Confidence 3689999999999999999999999999999876531 111 1467777
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+..++.++ ++.+++.|.+++..+ .+...+...++ .+++.+|.|++|+|.
T Consensus 284 l~~~L~~~GV--~i~~~~~V~~I~~~~---------------------~~~v~v~~~~~----~~~i~aD~VlvA~Gr-- 334 (561)
T PTZ00058 284 LENDMKKNNI--NIITHANVEEIEKVK---------------------EKNLTIYLSDG----RKYEHFDYVIYCVGR-- 334 (561)
T ss_pred HHHHHHHCCC--EEEeCCEEEEEEecC---------------------CCcEEEEECCC----CEEEECCEEEECcCC--
Confidence 7877888888 899999999998643 12233433332 156899999999994
Q ss_pred CCCCCC
Q 009917 163 DVPNIP 168 (522)
Q Consensus 163 ~~p~~P 168 (522)
.|+..
T Consensus 335 -~Pn~~ 339 (561)
T PTZ00058 335 -SPNTE 339 (561)
T ss_pred -CCCcc
Confidence 46644
No 247
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.26 E-value=5.5e-06 Score=86.31 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHhc--CCceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~ 36 (522)
.||+|||||++|+++|.+|++. |.+|+|+|++.
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 6899999999999999999997 89999999865
No 248
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.26 E-value=1.6e-05 Score=85.11 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=36.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~ 41 (522)
..||+|||+|.+|+++|..+++.|.+|+|+||....||.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 479999999999999999999999999999999887764
No 249
>PLN02815 L-aspartate oxidase
Probab=98.25 E-value=1.3e-05 Score=85.40 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.|||+||..+++.| +|+|+|+.+..||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 369999999999999999999999 9999999887665
No 250
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.25 E-value=1.4e-05 Score=84.15 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=34.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~ 41 (522)
|...||+|||+|.|||+||..+.+ |.+|+|+|+.+..||.
T Consensus 1 ~~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 1 MPSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred CCccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 456899999999999999999976 8999999998865553
No 251
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.25 E-value=1.7e-05 Score=85.09 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.3
Q ss_pred EEEECCChhHHHHHHHHHhcCCceEEEecCCCcc
Q 009917 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (522)
Q Consensus 6 vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G 39 (522)
|+|||+|.|||+||..+++.|.+|+|+||.+.++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 7999999999999999999999999999987443
No 252
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.24 E-value=1.8e-05 Score=84.46 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=36.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~ 41 (522)
..||+|||+|.+||+||..+++.|.+|+|+|+.+..||.
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 479999999999999999999999999999999887774
No 253
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.24 E-value=1.2e-05 Score=83.38 Aligned_cols=99 Identities=20% Similarity=0.323 Sum_probs=72.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~l 216 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-------------------------------RH--LDEDISDRF 216 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876531 00 114555666
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.++.+ .++ .++++++|.+++..+ +...|++.++ +++.+|.|++|+|.
T Consensus 217 ~~~~~-~gI--~i~~~~~V~~i~~~~----------------------~~v~v~~~~g-----~~i~~D~vl~a~G~--- 263 (452)
T TIGR03452 217 TEIAK-KKW--DIRLGRNVTAVEQDG----------------------DGVTLTLDDG-----STVTADVLLVATGR--- 263 (452)
T ss_pred HHHHh-cCC--EEEeCCEEEEEEEcC----------------------CeEEEEEcCC-----CEEEcCEEEEeecc---
Confidence 55443 456 788899999998643 2355655443 47999999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 264 ~pn~~ 268 (452)
T TIGR03452 264 VPNGD 268 (452)
T ss_pred CcCCC
Confidence 45554
No 254
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.24 E-value=1.4e-05 Score=83.44 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=76.2
Q ss_pred CCcEEEECCChhHHHHHHHHHh---cCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLL---KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQV 79 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~---~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (522)
.++|+|||+|+.|+.+|..+.. .|.+|+|+++.+.+. +.+ ..++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RGF--DSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------ccc--CHHH
Confidence 3689999999999999976654 489999999887642 111 1567
Q ss_pred HHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeec
Q 009917 80 LDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVG 159 (522)
Q Consensus 80 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG 159 (522)
.+.+.+..++.++ ++.++++|.+++..+ ++...|++.++ .++.+|.||+|+|
T Consensus 234 ~~~l~~~L~~~GI--~i~~~~~v~~i~~~~---------------------~~~~~v~~~~g-----~~i~~D~vl~a~G 285 (486)
T TIGR01423 234 RKELTKQLRANGI--NIMTNENPAKVTLNA---------------------DGSKHVTFESG-----KTLDVDVVMMAIG 285 (486)
T ss_pred HHHHHHHHHHcCC--EEEcCCEEEEEEEcC---------------------CceEEEEEcCC-----CEEEcCEEEEeeC
Confidence 7888888888888 899999999998653 12234555443 4699999999999
Q ss_pred ccCCCCCCC
Q 009917 160 RFSDVPNIP 168 (522)
Q Consensus 160 ~~s~~p~~P 168 (522)
. .|+..
T Consensus 286 ~---~Pn~~ 291 (486)
T TIGR01423 286 R---VPRTQ 291 (486)
T ss_pred C---CcCcc
Confidence 4 45543
No 255
>PRK14727 putative mercuric reductase; Provisional
Probab=98.23 E-value=1.4e-05 Score=83.73 Aligned_cols=98 Identities=8% Similarity=0.144 Sum_probs=74.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++..-+ +. ...++.+.+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------------------~~--~d~~~~~~l 234 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------------------FR--EDPLLGETL 234 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------Cc--chHHHHHHH
Confidence 68999999999999999999999999999874211 00 124677788
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ .+.++++|.+++..+ +.+.+...+ .++.+|.||+|+|.
T Consensus 235 ~~~L~~~GV--~i~~~~~V~~i~~~~----------------------~~~~v~~~~------g~i~aD~VlvA~G~--- 281 (479)
T PRK14727 235 TACFEKEGI--EVLNNTQASLVEHDD----------------------NGFVLTTGH------GELRAEKLLISTGR--- 281 (479)
T ss_pred HHHHHhCCC--EEEcCcEEEEEEEeC----------------------CEEEEEEcC------CeEEeCEEEEccCC---
Confidence 888888888 899999999998653 235554433 25889999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 282 ~pn~~ 286 (479)
T PRK14727 282 HANTH 286 (479)
T ss_pred CCCcc
Confidence 45554
No 256
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.23 E-value=1.4e-05 Score=85.54 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=37.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~ 43 (522)
..||+|||+|.+|+++|..+.+.|.+|+|||+.+.+||...
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 47999999999999999999999999999999887777533
No 257
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.21 E-value=3.8e-06 Score=92.67 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=59.4
Q ss_pred CcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCc---ccc---ccccccceeecC------------Ccccee--ec
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDI---GGA---WIKTVETTMLQT------------PKQLYQ--FS 61 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~---Gg~---w~~~~~~~~~~~------------~~~~~~--~~ 61 (522)
++|+|||||+|||++|..|.+. |++|+|+|+++.. |.. +......+.... ...... +.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 3799999999999999999997 8999999998752 321 111000000000 000000 11
Q ss_pred CCCCCCCCCCCC--CChhHHHHHHHHHHHhcCCccceEeeeeEEEE
Q 009917 62 DYPWPDSVTTDF--PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGI 105 (522)
Q Consensus 62 ~~~~~~~~~~~~--~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v 105 (522)
....... ...| ..+.++.+.|.+.+.+.++ .++++++|+++
T Consensus 81 g~~~~~~-g~~~~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i 123 (765)
T PRK08255 81 GRRIRSG-GHGFAGIGRKRLLNILQARCEELGV--KLVFETEVPDD 123 (765)
T ss_pred CEEEEEC-CeeEecCCHHHHHHHHHHHHHHcCC--EEEeCCccCch
Confidence 0000000 1112 4678899999999988887 78888776543
No 258
>PRK12839 hypothetical protein; Provisional
Probab=98.21 E-value=2.6e-05 Score=83.04 Aligned_cols=41 Identities=32% Similarity=0.422 Sum_probs=37.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~ 43 (522)
..||+|||+|.+|+++|..+.+.|.+|+|+|+.+.+||...
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 37899999999999999999999999999999988887644
No 259
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.19 E-value=2.4e-05 Score=81.84 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=76.2
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
.+++|||+|+.|+.+|..|++.|.+|+++++. .+. +.+ ..++.+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------------------~~~--d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------------------RGF--DQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-------------------------------ccc--CHHHHHHH
Confidence 58999999999999999999999999999873 320 111 25677888
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ ++.+++.+.+++..+ +...|++.++. ...++.+|.||+|+|.
T Consensus 227 ~~~L~~~gV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~~~--~~~~i~~D~vl~a~G~--- 277 (484)
T TIGR01438 227 GEHMEEHGV--KFKRQFVPIKVEQIE----------------------AKVKVTFTDST--NGIEEEYDTVLLAIGR--- 277 (484)
T ss_pred HHHHHHcCC--EEEeCceEEEEEEcC----------------------CeEEEEEecCC--cceEEEeCEEEEEecC---
Confidence 888888888 899999998887653 22345554431 1246899999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 278 ~pn~~ 282 (484)
T TIGR01438 278 DACTR 282 (484)
T ss_pred CcCCC
Confidence 45554
No 260
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=1.8e-05 Score=84.74 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=31.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
.||+|||||.|||+||..+++. .+|+|+||....+|
T Consensus 6 ~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 6 YDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred ccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 6999999999999999999986 89999999865444
No 261
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.19 E-value=1e-05 Score=78.42 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=66.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhc------CCceEEEecCCCccccccc-----------ccc-----ceeecCC--ccce
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK------GFHPIVFEARSDIGGAWIK-----------TVE-----TTMLQTP--KQLY 58 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~------g~~v~i~e~~~~~Gg~w~~-----------~~~-----~~~~~~~--~~~~ 58 (522)
..||||||||||||+||++|.+. .++|.|+|+...+||.-.. ..| +.-+++| +..+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~ 155 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF 155 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence 47999999999999999999873 4689999999999985332 111 1112222 2222
Q ss_pred eecC----CCCCC----CCCCCC-CChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcC
Q 009917 59 QFSD----YPWPD----SVTTDF-PDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEG 109 (522)
Q Consensus 59 ~~~~----~~~~~----~~~~~~-~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~ 109 (522)
.|.- +|.|. .....| .+-.++.+||-+-|+.+|+ .|.-+..+.+|-.++
T Consensus 156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~Gv--EiyPg~aaSevly~e 213 (621)
T KOG2415|consen 156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGV--EIYPGFAASEVLYDE 213 (621)
T ss_pred eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCc--eeccccchhheeEcC
Confidence 2221 12221 112233 3667889999999999998 666555555555544
No 262
>PRK14694 putative mercuric reductase; Provisional
Probab=98.19 E-value=2.2e-05 Score=82.00 Aligned_cols=99 Identities=13% Similarity=0.268 Sum_probs=73.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||+|+.|+.+|..|.+.|.+|+++++..-+ + . ...++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l---------------------------~-----~--~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL---------------------------S-----Q--EDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC---------------------------C-----C--CCHHHHHH
Confidence 368999999999999999999999999999864211 0 0 12456777
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+..++.++ .+.++++|.+++.++ +...+...+ .++.+|.||+|+|.
T Consensus 224 l~~~l~~~GI--~v~~~~~v~~i~~~~----------------------~~~~v~~~~------~~i~~D~vi~a~G~-- 271 (468)
T PRK14694 224 IEAAFRREGI--EVLKQTQASEVDYNG----------------------REFILETNA------GTLRAEQLLVATGR-- 271 (468)
T ss_pred HHHHHHhCCC--EEEeCCEEEEEEEcC----------------------CEEEEEECC------CEEEeCEEEEccCC--
Confidence 7787888888 899999999997643 223444322 25999999999994
Q ss_pred CCCCCC
Q 009917 163 DVPNIP 168 (522)
Q Consensus 163 ~~p~~P 168 (522)
.|+..
T Consensus 272 -~pn~~ 276 (468)
T PRK14694 272 -TPNTE 276 (468)
T ss_pred -CCCcC
Confidence 45554
No 263
>PTZ00367 squalene epoxidase; Provisional
Probab=98.19 E-value=1.2e-05 Score=84.94 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
.+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3689999999999999999999999999999975
No 264
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.18 E-value=1.2e-05 Score=78.51 Aligned_cols=36 Identities=36% Similarity=0.595 Sum_probs=33.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~ 38 (522)
+.+|+|||||.+|+++|..|.++|++|+|+|++.++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 368999999999999999999999999999998754
No 265
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.18 E-value=2.2e-05 Score=80.52 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=30.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhc-CC-ceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK-GF-HPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~-g~-~v~i~e~~~ 36 (522)
..||+|||||..|+++|.+|.+. |. +|+|+|+..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 36999999999999999999995 85 899999975
No 266
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.17 E-value=1.9e-06 Score=89.72 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=37.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcC--CceEEEecCCCccccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g--~~v~i~e~~~~~Gg~w~~ 44 (522)
++|+|||||+|||+||..|.+.| ++|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 47999999999999999999987 899999999999997655
No 267
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.17 E-value=1.6e-05 Score=81.68 Aligned_cols=97 Identities=28% Similarity=0.409 Sum_probs=77.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|||||+|+.|+.+|..|++.|++|+++|+.+.+++. .+. .++.+.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~------------------------------~~~--~~~~~~~ 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ------------------------------LLD--PEVAEEL 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh------------------------------hhh--HHHHHHH
Confidence 68999999999999999999999999999999887632 111 5677888
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEE---EEEecCCCCceeEEEeCEEEEeecc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWT---VAVEDAKNHSTEVHQVDFVILCVGR 160 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~g~~~~~~~d~lvvAtG~ 160 (522)
.+..+.+++ .+++++++..++... +... +...++ ..+.+|.+++++|.
T Consensus 185 ~~~l~~~gi--~~~~~~~~~~i~~~~----------------------~~~~~~~~~~~~~-----~~~~~d~~~~~~g~ 235 (415)
T COG0446 185 AELLEKYGV--ELLLGTKVVGVEGKG----------------------NTLVVERVVGIDG-----EEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHCCc--EEEeCCceEEEEccc----------------------CcceeeEEEEeCC-----cEEEeeEEEEeecc
Confidence 888888887 788999999998764 1111 344444 57999999999995
Q ss_pred c
Q 009917 161 F 161 (522)
Q Consensus 161 ~ 161 (522)
.
T Consensus 236 ~ 236 (415)
T COG0446 236 R 236 (415)
T ss_pred c
Confidence 3
No 268
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.15 E-value=2.6e-05 Score=81.45 Aligned_cols=102 Identities=29% Similarity=0.353 Sum_probs=74.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~~ 216 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-------------------------------L--EDPEVSKQA 216 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------------------c--hhHHHHHHH
Confidence 6899999999999999999999999999999765420 0 114667777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++. + ++.++++|.+++..+ +....++..+ +...++.+|.||+|+| .
T Consensus 217 ~~~l~~~-I--~i~~~~~v~~i~~~~---------------------~~~v~~~~~~---~~~~~i~~D~vi~a~G---~ 266 (460)
T PRK06292 217 QKILSKE-F--KIKLGAKVTSVEKSG---------------------DEKVEELEKG---GKTETIEADYVLVATG---R 266 (460)
T ss_pred HHHHhhc-c--EEEcCCEEEEEEEcC---------------------CceEEEEEcC---CceEEEEeCEEEEccC---C
Confidence 7777666 7 889999999997653 1112232222 3335799999999999 4
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+.+
T Consensus 267 ~p~~~ 271 (460)
T PRK06292 267 RPNTD 271 (460)
T ss_pred ccCCC
Confidence 56665
No 269
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.15 E-value=1.4e-05 Score=88.45 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=74.3
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. + ..+ ..++.+.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll--------------------------~----~~l--d~~~~~~l 188 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM--------------------------A----KQL--DQTAGRLL 188 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh--------------------------h----hhc--CHHHHHHH
Confidence 689999999999999999999999999999876431 0 000 14556777
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
.+..++.++ .+.+++.|+++.... ....|++.++ +++.+|.||+|+|..
T Consensus 189 ~~~l~~~GV--~v~~~~~v~~i~~~~----------------------~~~~v~~~dG-----~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 189 QRELEQKGL--TFLLEKDTVEIVGAT----------------------KADRIRFKDG-----SSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHcCC--EEEeCCceEEEEcCC----------------------ceEEEEECCC-----CEEEcCEEEECCCCC
Confidence 777888898 899999998886532 1234666665 579999999999954
No 270
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.15 E-value=1.7e-05 Score=84.41 Aligned_cols=39 Identities=26% Similarity=0.563 Sum_probs=36.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~ 41 (522)
..||+|||+|.+|+++|..+++.|.+|+|+|+.+.+||.
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 479999999999999999999999999999998877763
No 271
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.15 E-value=1.7e-05 Score=87.85 Aligned_cols=99 Identities=21% Similarity=0.257 Sum_probs=76.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++++|||+|+.|+.+|..|++.|.+|+|+++.+.+- +.. -..++.+.+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------------------------~~~-ld~~~~~~l 193 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------------------------AEQ-LDQMGGEQL 193 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------------------------hhh-cCHHHHHHH
Confidence 579999999999999999999999999999876431 000 114667788
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
++..++.++ .+.+++.|.++...+ ....-.|.+.++ +++.+|.||+|+|..
T Consensus 194 ~~~L~~~GV--~v~~~~~v~~I~~~~--------------------~~~~~~v~~~dG-----~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 194 RRKIESMGV--RVHTSKNTLEIVQEG--------------------VEARKTMRFADG-----SELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHCCC--EEEcCCeEEEEEecC--------------------CCceEEEEECCC-----CEEEcCEEEECCCcc
Confidence 888888899 899999999997543 012234566555 579999999999954
No 272
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.14 E-value=3.1e-05 Score=82.36 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=36.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAW 42 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w 42 (522)
+.||+|||+|.+|+++|..+++.|.+|+|||+.+..||+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 4799999999999999999999999999999988777753
No 273
>PRK13748 putative mercuric reductase; Provisional
Probab=98.13 E-value=2.6e-05 Score=83.56 Aligned_cols=99 Identities=10% Similarity=0.191 Sum_probs=75.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
.++|+|||+|+.|+.+|..|.+.|.+|+++++...+ +. ...++.+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------------------------------~~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF--------------------------------FR--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------cc--cCHHHHHH
Confidence 368999999999999999999999999999974311 00 12467778
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+..++.++ .+.++++|.+++..+ +...+...+ .++.+|.||+|+|
T Consensus 316 l~~~l~~~gI--~i~~~~~v~~i~~~~----------------------~~~~v~~~~------~~i~~D~vi~a~G--- 362 (561)
T PRK13748 316 VTAAFRAEGI--EVLEHTQASQVAHVD----------------------GEFVLTTGH------GELRADKLLVATG--- 362 (561)
T ss_pred HHHHHHHCCC--EEEcCCEEEEEEecC----------------------CEEEEEecC------CeEEeCEEEEccC---
Confidence 8888888888 899999999998643 234444332 2589999999999
Q ss_pred CCCCCC
Q 009917 163 DVPNIP 168 (522)
Q Consensus 163 ~~p~~P 168 (522)
..|+..
T Consensus 363 ~~pn~~ 368 (561)
T PRK13748 363 RAPNTR 368 (561)
T ss_pred CCcCCC
Confidence 456654
No 274
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.13 E-value=3.9e-05 Score=82.02 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg 40 (522)
..||+|||||.|||+||..+++. |.+|+|+||....||
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 37999999999999999999986 479999999876554
No 275
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.11 E-value=4.8e-05 Score=81.36 Aligned_cols=41 Identities=22% Similarity=0.507 Sum_probs=37.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~ 43 (522)
..||+|||+|.+|+++|..+.+.|.+|+|+|+.+.+||...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 36999999999999999999999999999999988888654
No 276
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.11 E-value=3.9e-05 Score=73.91 Aligned_cols=32 Identities=34% Similarity=0.386 Sum_probs=30.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~ 35 (522)
.||+|||||.+|-+.|..|.+.|-+|.||||.
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 68999999999999999999999999999986
No 277
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.11 E-value=5.3e-05 Score=78.06 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=72.1
Q ss_pred CcEEEECCChhHHHHHHHHHh--------------cCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLL--------------KGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSV 69 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~--------------~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (522)
++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 389999999999999999876 367899999876531
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEE
Q 009917 70 TTDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVH 149 (522)
Q Consensus 70 ~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~ 149 (522)
+.+ ..++.+++++..++.++ ++.++++|.+++.+ .|.+.++ +++
T Consensus 224 -~~~--~~~~~~~~~~~L~~~gV--~v~~~~~v~~v~~~--------------------------~v~~~~g-----~~i 267 (424)
T PTZ00318 224 -GSF--DQALRKYGQRRLRRLGV--DIRTKTAVKEVLDK--------------------------EVVLKDG-----EVI 267 (424)
T ss_pred -ccC--CHHHHHHHHHHHHHCCC--EEEeCCeEEEEeCC--------------------------EEEECCC-----CEE
Confidence 111 14677888888888998 89999999988643 2666665 579
Q ss_pred EeCEEEEeeccc
Q 009917 150 QVDFVILCVGRF 161 (522)
Q Consensus 150 ~~d~lvvAtG~~ 161 (522)
.+|.+|+|+|..
T Consensus 268 ~~d~vi~~~G~~ 279 (424)
T PTZ00318 268 PTGLVVWSTGVG 279 (424)
T ss_pred EccEEEEccCCC
Confidence 999999999954
No 278
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.11 E-value=5.5e-05 Score=79.81 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=33.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+| +||++|.++++.|.+|+|+|+.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4699999999 999999999999999999999887664
No 279
>PRK07233 hypothetical protein; Provisional
Probab=98.11 E-value=4.2e-06 Score=86.64 Aligned_cols=40 Identities=43% Similarity=0.646 Sum_probs=37.6
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
+|+|||||.+||+||..|.+.|++|+|+|+++.+||.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6999999999999999999999999999999999997654
No 280
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.11 E-value=3.6e-05 Score=80.86 Aligned_cols=99 Identities=24% Similarity=0.234 Sum_probs=74.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++. .+. +.+ ..++.+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------------------~~~--d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL-------------------------------RGF--DRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc-------------------------------ccC--CHHHHHHH
Confidence 58999999999999999999999999999873 210 111 14567778
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ .+.+++.|.+++... +...|.+.++ +++.+|.||+|+|.
T Consensus 229 ~~~l~~~GV--~i~~~~~v~~v~~~~----------------------~~~~v~~~~g-----~~i~~D~vl~a~G~--- 276 (499)
T PTZ00052 229 VEYMKEQGT--LFLEGVVPINIEKMD----------------------DKIKVLFSDG-----TTELFDTVLYATGR--- 276 (499)
T ss_pred HHHHHHcCC--EEEcCCeEEEEEEcC----------------------CeEEEEECCC-----CEEEcCEEEEeeCC---
Confidence 888888888 888999998887643 2234555444 46799999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 277 ~pn~~ 281 (499)
T PTZ00052 277 KPDIK 281 (499)
T ss_pred CCCcc
Confidence 56654
No 281
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.11 E-value=4.1e-05 Score=82.25 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=75.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+..|..|.+.|.+|+++|+.+.+. +. -..++.+++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-------------------------------~~--~d~eis~~l 359 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-------------------------------PL--LDADVAKYF 359 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------------cc--CCHHHHHHH
Confidence 689999999999999999999999999999987642 10 124667777
Q ss_pred HHHH-HhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCC----C------ceeEEEeC
Q 009917 84 QSYA-SHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKN----H------STEVHQVD 152 (522)
Q Consensus 84 ~~~~-~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----g------~~~~~~~d 152 (522)
.+.. ++.++ .+.+++.|.+++..+ + .....|.+.+..+ + +.+++.+|
T Consensus 360 ~~~ll~~~GV--~I~~~~~V~~I~~~~--~------------------~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD 417 (659)
T PTZ00153 360 ERVFLKSKPV--RVHLNTLIEYVRAGK--G------------------NQPVIIGHSERQTGESDGPKKNMNDIKETYVD 417 (659)
T ss_pred HHHHhhcCCc--EEEcCCEEEEEEecC--C------------------ceEEEEEEeccccccccccccccccceEEEcC
Confidence 6653 56778 899999999998643 0 0113343332111 1 12479999
Q ss_pred EEEEeecccCCCCCCCC
Q 009917 153 FVILCVGRFSDVPNIPE 169 (522)
Q Consensus 153 ~lvvAtG~~s~~p~~P~ 169 (522)
.||+|+| ..|+...
T Consensus 418 ~VlvAtG---r~Pnt~~ 431 (659)
T PTZ00153 418 SCLVATG---RKPNTNN 431 (659)
T ss_pred EEEEEEC---cccCCcc
Confidence 9999999 4566543
No 282
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.09 E-value=3.2e-05 Score=81.72 Aligned_cols=100 Identities=22% Similarity=0.230 Sum_probs=71.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||||+.|+.+|..|.+.+.+|+++++.+.+. . ...+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~l 393 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKVL 393 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHHH
Confidence 689999999999999999999999999999765421 0 1123
Q ss_pred HHHHHh-cCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 84 QSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 84 ~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
....++ .++ ++.+++.|+++...+ +....|++.++.+++.+++.+|.||+|+|.
T Consensus 394 ~~~l~~~~gV--~i~~~~~v~~i~~~~---------------------~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~-- 448 (515)
T TIGR03140 394 QDKLKSLPNV--DILTSAQTTEIVGDG---------------------DKVTGIRYQDRNSGEEKQLDLDGVFVQIGL-- 448 (515)
T ss_pred HHHHhcCCCC--EEEECCeeEEEEcCC---------------------CEEEEEEEEECCCCcEEEEEcCEEEEEeCC--
Confidence 333333 577 888999999887542 122346666654455678999999999994
Q ss_pred CCCCCC
Q 009917 163 DVPNIP 168 (522)
Q Consensus 163 ~~p~~P 168 (522)
.|+..
T Consensus 449 -~Pn~~ 453 (515)
T TIGR03140 449 -VPNTE 453 (515)
T ss_pred -cCCch
Confidence 45543
No 283
>PRK10262 thioredoxin reductase; Provisional
Probab=98.08 E-value=4e-05 Score=75.97 Aligned_cols=100 Identities=14% Similarity=0.223 Sum_probs=72.2
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|..|+.+|..|.+.+.+|+++++.+.+. ....+.+.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~~ 191 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKRL 191 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHHH
Confidence 689999999999999999999999999999865321 112344555
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCC-CCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAK-NHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~g~~~~~~~d~lvvAtG~~ 161 (522)
.+..++.++ .+.+++.|++++... .+.-.|++.++. ++..+++.+|.||+|+|..
T Consensus 192 ~~~l~~~gV--~i~~~~~v~~v~~~~---------------------~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 192 MDKVENGNI--ILHTNRTLEEVTGDQ---------------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HhhccCCCe--EEEeCCEEEEEEcCC---------------------ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 666666777 788889999987542 112245555432 2334679999999999943
No 284
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.08 E-value=6.9e-05 Score=79.99 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.|||+||..+++. |.+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999986 589999999876555
No 285
>PLN02268 probable polyamine oxidase
Probab=98.07 E-value=3.6e-06 Score=87.24 Aligned_cols=41 Identities=27% Similarity=0.539 Sum_probs=38.1
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
.+|+|||||.|||+||+.|.+.|++|+|+|+++.+||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 47999999999999999999999999999999999997554
No 286
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.07 E-value=2.6e-05 Score=82.69 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=33.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.||++||..+. .|.+|+|+||.+..||
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 479999999999999999996 4999999999886665
No 287
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.06 E-value=5.5e-06 Score=86.57 Aligned_cols=42 Identities=36% Similarity=0.565 Sum_probs=38.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhc----CCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~----g~~v~i~e~~~~~Gg~w~~ 44 (522)
+++|+|||||++||++|..|.+. |++|+|+|+++.+||....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 46999999999999999999998 9999999999999997654
No 288
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.05 E-value=6e-06 Score=86.95 Aligned_cols=52 Identities=21% Similarity=0.403 Sum_probs=44.2
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-cccceeecCCc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTPK 55 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-~~~~~~~~~~~ 55 (522)
+||+|||||.+||++|..|++.|++|+|+|+++.+||.... ..++...+.-.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~ 54 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGA 54 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecc
Confidence 68999999999999999999999999999999999997655 44665555433
No 289
>PLN02546 glutathione reductase
Probab=98.05 E-value=5e-05 Score=80.35 Aligned_cols=101 Identities=21% Similarity=0.262 Sum_probs=74.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++..++
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~~~--d~~~~~~l 299 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------RGF--DEEVRDFV 299 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------ccc--CHHHHHHH
Confidence 689999999999999999999999999999876532 111 25677788
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
.+..++.++ .+.++++|.+++... ++...+...++ +...+|.||+|+|.
T Consensus 300 ~~~L~~~GV--~i~~~~~v~~i~~~~---------------------~g~v~v~~~~g-----~~~~~D~Viva~G~--- 348 (558)
T PLN02546 300 AEQMSLRGI--EFHTEESPQAIIKSA---------------------DGSLSLKTNKG-----TVEGFSHVMFATGR--- 348 (558)
T ss_pred HHHHHHCCc--EEEeCCEEEEEEEcC---------------------CCEEEEEECCe-----EEEecCEEEEeecc---
Confidence 887888888 899999999997643 12233332221 33458999999994
Q ss_pred CCCCC
Q 009917 164 VPNIP 168 (522)
Q Consensus 164 ~p~~P 168 (522)
.|+..
T Consensus 349 ~Pnt~ 353 (558)
T PLN02546 349 KPNTK 353 (558)
T ss_pred ccCCC
Confidence 45543
No 290
>PLN02568 polyamine oxidase
Probab=98.05 E-value=6.3e-06 Score=86.84 Aligned_cols=43 Identities=37% Similarity=0.561 Sum_probs=39.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcC-----CceEEEecCCCccccccc
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKG-----FHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g-----~~v~i~e~~~~~Gg~w~~ 44 (522)
...+|+|||||++||++|..|.+.| ++|+|+|+++.+||.+..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 3578999999999999999999877 899999999999998765
No 291
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.04 E-value=1.8e-05 Score=78.44 Aligned_cols=134 Identities=21% Similarity=0.212 Sum_probs=69.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCC--ceEEEecCCCccccccccccceeecCCccceeecCCCCCCC-----CCC--CC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGF--HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDS-----VTT--DF 73 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~--~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~ 73 (522)
.++|+|||||.++..++..|.+.+- +|+++-|+..+--.-. ......+-.|...-.|...|.... ... .|
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~-s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny 268 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD-SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNY 268 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB-----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTS
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc-ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcC
Confidence 4789999999999999999999764 7999988764210000 000001111211111111110000 000 11
Q ss_pred C--ChhHH---H--HHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCce
Q 009917 74 P--DHNQV---L--DYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (522)
Q Consensus 74 ~--~~~~~---~--~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~ 146 (522)
- +.+-+ . .|-+++..+-.+ .++-+++|++++..+ +++|.+++++..+++.
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~--~l~~~~~v~~~~~~~---------------------~~~~~l~~~~~~~~~~ 325 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRL--RLLPNTEVTSAEQDG---------------------DGGVRLTLRHRQTGEE 325 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---S--EEETTEEEEEEEEES----------------------SSEEEEEEETTT--E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCe--EEeCCCEEEEEEECC---------------------CCEEEEEEEECCCCCe
Confidence 1 11111 1 122333322223 566689999999875 3579999999877888
Q ss_pred eEEEeCEEEEeecc
Q 009917 147 EVHQVDFVILCVGR 160 (522)
Q Consensus 147 ~~~~~d~lvvAtG~ 160 (522)
+++.+|.||+|||.
T Consensus 326 ~~~~~D~VilATGy 339 (341)
T PF13434_consen 326 ETLEVDAVILATGY 339 (341)
T ss_dssp EEEEESEEEE---E
T ss_pred EEEecCEEEEcCCc
Confidence 99999999999995
No 292
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.04 E-value=8.2e-05 Score=78.93 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg 40 (522)
..||+|||+|.|||+||..+.+. .+|+|+||....||
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 36999999999999999999886 89999999876665
No 293
>PLN02676 polyamine oxidase
Probab=98.04 E-value=7.1e-06 Score=85.68 Aligned_cols=54 Identities=31% Similarity=0.456 Sum_probs=45.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCC-ceEEEecCCCccccccc-cccceeecCCcc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIK-TVETTMLQTPKQ 56 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~~~Gg~w~~-~~~~~~~~~~~~ 56 (522)
.++|+|||||++||++|..|.+.|. +|+|+|+++.+||.+.. .+++..++....
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~ 81 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGAN 81 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCE
Confidence 3689999999999999999999998 69999999999998876 666655555443
No 294
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=4.6e-06 Score=84.21 Aligned_cols=41 Identities=37% Similarity=0.601 Sum_probs=38.2
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
++|+|+|||.|||+||..|.+.|++|+|+|+++.+||....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 58999999999999999999999999999999999996554
No 295
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.01 E-value=9.6e-05 Score=85.20 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=36.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGA 41 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~ 41 (522)
..||+|||+|.||++||..+++.|.+|+|+||.+..||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 479999999999999999999999999999999888875
No 296
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.01 E-value=6.5e-06 Score=81.61 Aligned_cols=41 Identities=41% Similarity=0.711 Sum_probs=37.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC-ceEEEecCCCccccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIK 44 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~~~Gg~w~~ 44 (522)
.+|||||||.|||+||.+|.+.|+ +++|+|..+++||.-+.
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 589999999999999999998775 79999999999997665
No 297
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.00 E-value=5.4e-05 Score=74.05 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=66.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|++|+.+|..|.+.+.+|+++++.+.+. ....+.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~~~~~~--- 183 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------AEKILL--- 183 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------cCHHHH---
Confidence 689999999999999999999999999999865320 012222
Q ss_pred HHHHHhc-CCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHF-DLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
+.+++. ++ .+.++++|.+++.+. ..-.+++.+..+++.+++.+|.||+|+|..
T Consensus 184 -~~l~~~~gv--~~~~~~~v~~i~~~~----------------------~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 184 -DRLRKNPNI--EFLWNSTVKEIVGDN----------------------KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred -HHHHhCCCe--EEEeccEEEEEEccC----------------------cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 223333 77 788889999987532 112345544333555789999999999943
No 298
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.00 E-value=1.9e-05 Score=77.10 Aligned_cols=155 Identities=20% Similarity=0.169 Sum_probs=87.8
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccceeecCCCCCC---CchhhHHHHHHHHHhhcCCCh-hHHHHHHH
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEHWNIPDYFPWG---FPLAYLYLNRFAELLVHKPGE-GFLLSLLA 279 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~~~~p~~~~~g---~p~~~~~~~r~~~~~~~~~~~-~~~~~~~~ 279 (522)
..|+|||+|++|+=+|..+++.+. +|+++.+.+. +-.+....| -++..... ..+++.+.|+. .|+++.+.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k-~GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl~sal~ 77 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPK-LGRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFLKSALA 77 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCcc-ccceeEecCCCCcccccccc--HHHHHHhCCCcchHHHHHHH
Confidence 469999999999999999988765 4999998765 222211111 22221111 34455555533 23333332
Q ss_pred hhhhhhHHHHHHHHHHHHhhhccccccCCCCCCcccccccccceeccCCcccccccCCcEEEeecC-ceeEecCc----E
Q 009917 280 TMLSPLRWAISKFVEADIKKKHRLAKFGMVPKHSFLQELSSCLTITVPEKFYDKVEEGSIILKKSQ-DFSFCEDG----I 354 (522)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~g~v~v~~~~-i~~~~~~g----v 354 (522)
... +|.+..+++++--.......-++-|... +-..+-+.++..+++.+|+++... |.++..+. +
T Consensus 78 ~ft---~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sd--------kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l 146 (408)
T COG2081 78 RFT---PEDFIDWVEGLGIALKEEDLGRMFPDSD--------KASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRL 146 (408)
T ss_pred hCC---HHHHHHHHHhcCCeeEEccCceecCCcc--------chHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEE
Confidence 211 2333333333322221111112222200 011223456678889999999876 88887653 5
Q ss_pred EEcCCCceecccEEEEecCCCC
Q 009917 355 VVDGQTTPLKTDLVILATGFKG 376 (522)
Q Consensus 355 ~~~dG~~~~~~D~VI~aTG~~~ 376 (522)
.+.+|++ +.||.+|+|||=..
T Consensus 147 ~t~~g~~-i~~d~lilAtGG~S 167 (408)
T COG2081 147 DTSSGET-VKCDSLILATGGKS 167 (408)
T ss_pred EcCCCCE-EEccEEEEecCCcC
Confidence 6678877 99999999999553
No 299
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=1.4e-05 Score=75.24 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=54.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccc-eeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVET-TMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
+|++|||||.+|+.+|..|.+.|.+|+|+|+++.+||.+...+.. ..+.+-. |.. --...+.+.+.+|
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk----YGp-------HIFHT~~~~Vwdy 70 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK----YGP-------HIFHTDNKRVWDY 70 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee----ccC-------ceeecCchHHHHH
Confidence 689999999999999998888999999999999999998873321 2221110 110 0111244788899
Q ss_pred HHHHHHh
Q 009917 83 IQSYASH 89 (522)
Q Consensus 83 l~~~~~~ 89 (522)
+..+.+-
T Consensus 71 v~~F~e~ 77 (374)
T COG0562 71 VNQFTEF 77 (374)
T ss_pred Hhhhhhh
Confidence 9988764
No 300
>PLN02576 protoporphyrinogen oxidase
Probab=97.98 E-value=9.3e-06 Score=85.66 Aligned_cols=42 Identities=48% Similarity=0.667 Sum_probs=38.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhc-CCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~-g~~v~i~e~~~~~Gg~w~~ 44 (522)
.++|+|||||++||++|..|.+. |++|+|+|+++.+||....
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 36899999999999999999999 9999999999999997554
No 301
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.97 E-value=7.9e-05 Score=77.04 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=30.0
Q ss_pred EECCChhHHHHHHHHHhcCCceEEEecCCC--ccc
Q 009917 8 IVGAGVSGLLACKYLLLKGFHPIVFEARSD--IGG 40 (522)
Q Consensus 8 IIGaG~aGl~~a~~l~~~g~~v~i~e~~~~--~Gg 40 (522)
|||+|.+|++||..+++.|.+|+|+||.+. .||
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg 35 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGG 35 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCc
Confidence 799999999999999999999999999874 455
No 302
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.96 E-value=9e-06 Score=85.88 Aligned_cols=48 Identities=27% Similarity=0.311 Sum_probs=41.0
Q ss_pred EEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-cccceeecC
Q 009917 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQT 53 (522)
Q Consensus 6 vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-~~~~~~~~~ 53 (522)
|+|||||.+||+||..|++.|++|+|+|+++.+||.... ..++...+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~ 49 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDT 49 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEec
Confidence 699999999999999999999999999999999997665 345544443
No 303
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.95 E-value=1.1e-05 Score=81.62 Aligned_cols=41 Identities=37% Similarity=0.573 Sum_probs=37.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcC--CceEEEecCCCccccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKG--FHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g--~~v~i~e~~~~~Gg~w~~ 44 (522)
++|||||||.+||++|..|.+.+ .+++|||+.+++||.-..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 47999999999999999999998 899999999999997655
No 304
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.95 E-value=2.7e-05 Score=80.52 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=40.8
Q ss_pred ChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEE
Q 009917 75 DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFV 154 (522)
Q Consensus 75 ~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~l 154 (522)
.+..+-++|.+.+.+.|+ .+..+ +|+.+..+. + ..-..|++.++ +++++|++
T Consensus 152 DR~~fd~~L~~~A~~~Gv--~~~~g-~V~~v~~~~--~------------------g~i~~v~~~~g-----~~i~ad~~ 203 (454)
T PF04820_consen 152 DRAKFDQFLRRHAEERGV--EVIEG-TVVDVELDE--D------------------GRITAVRLDDG-----RTIEADFF 203 (454)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEET--EEEEEE-T--T------------------SEEEEEEETTS-----EEEEESEE
T ss_pred eHHHHHHHHHHHHhcCCC--EEEeC-EEEEEEEcC--C------------------CCEEEEEECCC-----CEEEEeEE
Confidence 578889999999999998 55444 688888764 1 11234555554 68999999
Q ss_pred EEeecccC
Q 009917 155 ILCVGRFS 162 (522)
Q Consensus 155 vvAtG~~s 162 (522)
|-|||..+
T Consensus 204 IDASG~~s 211 (454)
T PF04820_consen 204 IDASGRRS 211 (454)
T ss_dssp EE-SGGG-
T ss_pred EECCCccc
Confidence 99999763
No 305
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.93 E-value=1.1e-05 Score=80.67 Aligned_cols=41 Identities=34% Similarity=0.488 Sum_probs=37.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
.||+|||||++|+++|..|.+.|.+|+|+|+++.+||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 58999999999999999999999999999999999996544
No 306
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.92 E-value=1.4e-05 Score=83.43 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=36.6
Q ss_pred CcEEEECCChhHHHHHHHHHhc------CCceEEEecCCCccccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK------GFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~------g~~v~i~e~~~~~Gg~w~~ 44 (522)
++|+|||||.|||+||..|.+. |.+|+|+|+++.+||....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 4799999999999999999985 3799999999999997554
No 307
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.92 E-value=8.6e-05 Score=78.52 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=69.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||||.+|+.+|..|...+.+|+++++.+.+. . . .++
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~-~---~~l 392 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A-D---QVL 392 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c-c---HHH
Confidence 689999999999999999999999999999865420 0 0 223
Q ss_pred HHHHH-hcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYAS-HFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~-~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
.+... ..++ .+.+++.|+++...+ +..-.|++.+..+++.+++.+|.|++|+|..
T Consensus 393 ~~~l~~~~gI--~i~~~~~v~~i~~~~---------------------g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 393 QDKLRSLPNV--TIITNAQTTEVTGDG---------------------DKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHhcCCCc--EEEECcEEEEEEcCC---------------------CcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 33333 3577 888999999997542 1112356665545666789999999999954
No 308
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.91 E-value=8.3e-05 Score=79.39 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHH----hcCCceEEEecCCC
Q 009917 5 QIAIVGAGVSGLLACKYLL----LKGFHPIVFEARSD 37 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~----~~g~~v~i~e~~~~ 37 (522)
||+|||||.|||+||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999763
No 309
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.89 E-value=1.5e-05 Score=83.89 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=43.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc-cccceeecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVETTMLQTP 54 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-~~~~~~~~~~ 54 (522)
.||+|||||.+||++|..|++.|++|+|+|+++.+||.... ..++...+.-
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g 52 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVG 52 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEec
Confidence 48999999999999999999999999999999999997665 4466555543
No 310
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.88 E-value=0.00012 Score=82.51 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=32.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
..||+|||+|.|||+||..+.+.|.+|+|+|+...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 36999999999999999999999999999999763
No 311
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.87 E-value=8.3e-05 Score=78.36 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
..||+|||+|.|||+||..+. +.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 479999999999999999996 569999999875
No 312
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.82 E-value=1.9e-05 Score=82.30 Aligned_cols=40 Identities=48% Similarity=0.765 Sum_probs=37.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
+|+|||||++||++|..|.+.|++|+|+|+++.+||....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999996553
No 313
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.79 E-value=0.00027 Score=71.37 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=66.4
Q ss_pred CcEEEECCChhHHHHHHHHHh----cC--CceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChh
Q 009917 4 KQIAIVGAGVSGLLACKYLLL----KG--FHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHN 77 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~----~g--~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (522)
++|+|||+|++|+.+|..|.+ .| .+|+++ ..+.+. ..+ ..
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-------------------------------~~~--~~ 191 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL-------------------------------PGF--PA 191 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc-------------------------------ccC--CH
Confidence 589999999999999999975 34 478888 332210 111 14
Q ss_pred HHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEe
Q 009917 78 QVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILC 157 (522)
Q Consensus 78 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvA 157 (522)
++...+.+..++.++ .+..+++|.+++.. .|.+.++ +++.+|.||+|
T Consensus 192 ~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~--------------------------~v~~~~g-----~~i~~D~vi~a 238 (364)
T TIGR03169 192 KVRRLVLRLLARRGI--EVHEGAPVTRGPDG--------------------------ALILADG-----RTLPADAILWA 238 (364)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCeeEEEcCC--------------------------eEEeCCC-----CEEecCEEEEc
Confidence 566777888888888 88899898887521 3666554 57999999999
Q ss_pred eccc
Q 009917 158 VGRF 161 (522)
Q Consensus 158 tG~~ 161 (522)
+|..
T Consensus 239 ~G~~ 242 (364)
T TIGR03169 239 TGAR 242 (364)
T ss_pred cCCC
Confidence 9954
No 314
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.78 E-value=0.00019 Score=62.82 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=27.7
Q ss_pred EEEcCCCCHHHHHHHHhhhc--CCCCceEEEEcccc
Q 009917 207 TVVGLQKSALDIAMECTTAN--GLENPCTVLYRTEH 240 (522)
Q Consensus 207 vVIG~G~sg~dia~~l~~~~--~~~~~Vt~v~r~~~ 240 (522)
+|||+|.+|+=++..|.+.. ....+|+++.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999884 33356999988654
No 315
>PLN02529 lysine-specific histone demethylase 1
Probab=97.76 E-value=2.9e-05 Score=83.84 Aligned_cols=42 Identities=40% Similarity=0.647 Sum_probs=38.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
+++|+|||||++||+||..|.+.|++|+|+|+++.+||....
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 479999999999999999999999999999999999997554
No 316
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.76 E-value=3e-05 Score=76.97 Aligned_cols=43 Identities=35% Similarity=0.594 Sum_probs=39.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
...+|+|||||.+||++|..|.+.|++|+|+|.++.+||....
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 4579999999999999999999999999999999999996554
No 317
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.76 E-value=0.00022 Score=75.11 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=34.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G 39 (522)
++||+|||||.|||.||..+++.|++|+|+|+....+
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 4799999999999999999999999999999987544
No 318
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.72 E-value=0.00018 Score=72.23 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=30.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCc-eEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~-v~i~e~~~ 36 (522)
++|+|||+|+.|+.+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999999987 99999754
No 319
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00012 Score=74.18 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
..+||+|||||.||+.||...++.|.+++++--+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 45899999999999999999999999888766443
No 320
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.68 E-value=4.1e-05 Score=78.47 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=40.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
+..||+|||+|.+|+.+|..|.+.|.+|+++|+++..||.|..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 5689999999999999999999999999999999999998885
No 321
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.67 E-value=0.00037 Score=69.53 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=81.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
..|+++|+|..|+.+|..|...+.+|+++++.+.+ ++ .. -..++.+.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------------------------~~----~l--f~~~i~~~~ 261 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------------------------LP----RL--FGPSIGQFY 261 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------------------------hh----hh--hhHHHHHHH
Confidence 56999999999999999999999999999987542 11 11 225677888
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCC
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSD 163 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~ 163 (522)
..|.+..++ .+..++.+.+++... ....-.|.+.++ .++.+|.||+++|.
T Consensus 262 ~~y~e~kgV--k~~~~t~~s~l~~~~--------------------~Gev~~V~l~dg-----~~l~adlvv~GiG~--- 311 (478)
T KOG1336|consen 262 EDYYENKGV--KFYLGTVVSSLEGNS--------------------DGEVSEVKLKDG-----KTLEADLVVVGIGI--- 311 (478)
T ss_pred HHHHHhcCe--EEEEecceeecccCC--------------------CCcEEEEEeccC-----CEeccCeEEEeecc---
Confidence 888888888 899999999888654 112245666776 68999999999994
Q ss_pred CCCCCCC
Q 009917 164 VPNIPEF 170 (522)
Q Consensus 164 ~p~~P~~ 170 (522)
.|+.+.+
T Consensus 312 ~p~t~~~ 318 (478)
T KOG1336|consen 312 KPNTSFL 318 (478)
T ss_pred ccccccc
Confidence 5676644
No 322
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.65 E-value=0.00037 Score=72.35 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
++|+|||+|..|+-+|..|.+.|.+|+++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999864
No 323
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.64 E-value=5.1e-05 Score=79.20 Aligned_cols=40 Identities=40% Similarity=0.550 Sum_probs=36.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
+|+|||||.+||++|..|.+.|++|+|+|+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999986443
No 324
>PLN02487 zeta-carotene desaturase
Probab=97.61 E-value=6.5e-05 Score=79.39 Aligned_cols=41 Identities=34% Similarity=0.526 Sum_probs=38.2
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
++|+|||||++||++|..|.+.|++|+|+|+.+.+||.+..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s 116 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGS 116 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceee
Confidence 58999999999999999999999999999999999986653
No 325
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.61 E-value=6.6e-05 Score=81.64 Aligned_cols=42 Identities=38% Similarity=0.672 Sum_probs=38.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
+++|+|||||++||++|..|.+.|++|+|+|+++.+||....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 478999999999999999999999999999999999996554
No 326
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.57 E-value=0.00057 Score=72.88 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=31.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 6899999999999999999999999999998754
No 327
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.56 E-value=0.00074 Score=70.38 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=30.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC-ceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~ 36 (522)
++|+|||+|..|+-+|..|.+.|. +|+++++++
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999998 899999864
No 328
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.55 E-value=0.00013 Score=69.50 Aligned_cols=41 Identities=34% Similarity=0.571 Sum_probs=36.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
+.+|+|||+|++||+||..|.++ .+|++||.+..+||.-+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccce
Confidence 36899999999999999999875 899999999999997665
No 329
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.54 E-value=0.00049 Score=69.13 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
+|+|||+|.|||++|..|.+. ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999988 99999999764
No 330
>PRK12831 putative oxidoreductase; Provisional
Probab=97.52 E-value=0.0036 Score=65.20 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=30.9
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
++|+|||+|..|+-+|..|.+.|.+|+++.+.+
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999864
No 331
>PLN02612 phytoene desaturase
Probab=97.48 E-value=0.00012 Score=78.03 Aligned_cols=41 Identities=41% Similarity=0.704 Sum_probs=37.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~ 43 (522)
.++|+|||||++||++|..|.+.|++++|+|+++.+||.-.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 46899999999999999999999999999999999998543
No 332
>PLN03000 amine oxidase
Probab=97.47 E-value=0.00013 Score=79.46 Aligned_cols=42 Identities=43% Similarity=0.642 Sum_probs=39.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
..+|+|||||++||++|..|.+.|++|+|+|+++.+||.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 378999999999999999999999999999999999997665
No 333
>PLN02976 amine oxidase
Probab=97.46 E-value=0.00017 Score=81.50 Aligned_cols=42 Identities=48% Similarity=0.705 Sum_probs=39.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
.++|+|||||++|+++|..|.+.|++|+|||+++.+||.|..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 378999999999999999999999999999999999998776
No 334
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.46 E-value=0.00015 Score=72.93 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=32.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~ 38 (522)
++|+|||||++|+.+|..|++.|++|+|+|+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 69999999999999999999999999999987654
No 335
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00015 Score=73.77 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=34.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G 39 (522)
.+++|+|||||.+|+++|..|.+.|.+|+++|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 45899999999999999999999999999999876443
No 336
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.40 E-value=0.0025 Score=63.47 Aligned_cols=57 Identities=30% Similarity=0.458 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEE
Q 009917 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (522)
Q Consensus 77 ~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvv 156 (522)
.++...++++.+.+|+ .++|+|+|++++... +....|.+.++ .++.+|+||+
T Consensus 173 ~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~~---------------------~~~~~v~~~~g-----~~i~~~~vvl 224 (486)
T COG2509 173 PKVVKNIREYLESLGG--EIRFNTEVEDIEIED---------------------NEVLGVKLTKG-----EEIEADYVVL 224 (486)
T ss_pred HHHHHHHHHHHHhcCc--EEEeeeEEEEEEecC---------------------CceEEEEccCC-----cEEecCEEEE
Confidence 4666788888999998 999999999999865 12345666666 6899999999
Q ss_pred eeccc
Q 009917 157 CVGRF 161 (522)
Q Consensus 157 AtG~~ 161 (522)
|.|..
T Consensus 225 A~Grs 229 (486)
T COG2509 225 APGRS 229 (486)
T ss_pred ccCcc
Confidence 99975
No 337
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.39 E-value=0.00017 Score=71.84 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=32.2
Q ss_pred ccccC-CcEEEeecCceeEec-----CcEEEcCCCceecccEEEEecCC
Q 009917 332 DKVEE-GSIILKKSQDFSFCE-----DGIVVDGQTTPLKTDLVILATGF 374 (522)
Q Consensus 332 ~~l~~-g~v~v~~~~i~~~~~-----~gv~~~dG~~~~~~D~VI~aTG~ 374 (522)
+.+.+ ++|++..+.++.+.. .||++.+|.. +.+|.||+|||-
T Consensus 103 ~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~-~~a~~vVlaTGt 150 (392)
T PF01134_consen 103 EKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEE-IEADAVVLATGT 150 (392)
T ss_dssp HHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEE-EEECEEEE-TTT
T ss_pred HHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCE-EecCEEEEeccc
Confidence 44444 789998888888743 2489999998 999999999998
No 338
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.35 E-value=0.00015 Score=75.13 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=31.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 201 ~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
..+++|+|||+|++|+.+|..|+.... ..+|+++.|.|.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~ 62 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPT 62 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCC
Confidence 467899999999999999999986321 145999999875
No 339
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.34 E-value=0.00023 Score=69.87 Aligned_cols=40 Identities=40% Similarity=0.576 Sum_probs=35.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCc--eEEEecCCCcccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFH--PIVFEARSDIGGAWI 43 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~--v~i~e~~~~~Gg~w~ 43 (522)
++|+|+|||.+||++|..|++.+-+ +++||+.+++||--+
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 7899999999999999999998765 667999999998433
No 340
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.33 E-value=0.00025 Score=75.63 Aligned_cols=39 Identities=28% Similarity=0.594 Sum_probs=35.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC--Ccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--DIGGA 41 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~--~~Gg~ 41 (522)
..||+|||+|.|||+||..+++.|.+|+|+|+.+ ..||.
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 4799999999999999999999999999999998 66764
No 341
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.31 E-value=0.00034 Score=61.92 Aligned_cols=55 Identities=27% Similarity=0.568 Sum_probs=41.9
Q ss_pred CcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCcc-ccccc--cccceeecCCccce
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG-GAWIK--TVETTMLQTPKQLY 58 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~G-g~w~~--~~~~~~~~~~~~~~ 58 (522)
.||+|+|||.+||++|..+.++ +++|.|||.+-.+| |.|.- .+....+.-|++++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLF 136 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLF 136 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHH
Confidence 6899999999999999999864 68999999987665 57775 44444444555543
No 342
>PRK06847 hypothetical protein; Provisional
Probab=97.31 E-value=0.00078 Score=68.29 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 203 gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.++|+|||+|.+|+-+|..|++.+. +|+++.|++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCC
Confidence 4689999999999999999998765 4999998875
No 343
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.31 E-value=0.00025 Score=74.28 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=37.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~ 43 (522)
+||+|||+|++|+.+|+.|.+.|++|++||+....||.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 4899999999999999999999999999999999988775
No 344
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.30 E-value=0.00043 Score=72.65 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
.++|+|||+|.+|+++|..|++.|.+|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999753
No 345
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.28 E-value=0.00028 Score=71.36 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=33.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcc
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIG 39 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~G 39 (522)
.+|+|||||.+|+.+|..|++.|++|+|||+++.++
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 479999999999999999999999999999877654
No 346
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.28 E-value=0.0085 Score=66.50 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCc-eEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~-v~i~e~~~ 36 (522)
++|+|||+|..|+-+|..+.+.|.+ |+++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999987 99999864
No 347
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.28 E-value=0.0052 Score=62.40 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=36.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhc----CCceEEEecCCCcccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~----g~~v~i~e~~~~~Gg~w~ 43 (522)
.++.=|||+|.|+|+||..|.+. |-+|+|+|+.+..||...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 56788999999999999999985 568999999998888654
No 348
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.27 E-value=0.00045 Score=67.82 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=72.9
Q ss_pred cEEEECCChhHHHHHHHHHhc--------------CCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCC
Q 009917 5 QIAIVGAGVSGLLACKYLLLK--------------GFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVT 70 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~--------------g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (522)
.++||||||.|+..|..|... .++|+++|..+.+=
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------- 268 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------- 268 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-------------------------------
Confidence 589999999999999999752 35799999877531
Q ss_pred CCCCChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEE
Q 009917 71 TDFPDHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQ 150 (522)
Q Consensus 71 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~ 150 (522)
..| ...+.+|.++...+.++ .++.++.|..|+... +++..+ +|+.+++.
T Consensus 269 ~mF--dkrl~~yae~~f~~~~I--~~~~~t~Vk~V~~~~--------------------------I~~~~~-~g~~~~iP 317 (491)
T KOG2495|consen 269 NMF--DKRLVEYAENQFVRDGI--DLDTGTMVKKVTEKT--------------------------IHAKTK-DGEIEEIP 317 (491)
T ss_pred HHH--HHHHHHHHHHHhhhccc--eeecccEEEeecCcE--------------------------EEEEcC-CCceeeec
Confidence 111 13455666666666677 788888888887543 555554 46778999
Q ss_pred eCEEEEeecccCCCCCCC
Q 009917 151 VDFVILCVGRFSDVPNIP 168 (522)
Q Consensus 151 ~d~lvvAtG~~s~~p~~P 168 (522)
|--||-|||.. ..|.+-
T Consensus 318 YG~lVWatG~~-~rp~~k 334 (491)
T KOG2495|consen 318 YGLLVWATGNG-PRPVIK 334 (491)
T ss_pred ceEEEecCCCC-Cchhhh
Confidence 99999999976 355443
No 349
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.22 E-value=0.0048 Score=58.89 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=35.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhc----CCceEEEecCCC---------cccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEARSD---------IGGAWI 43 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~----g~~v~i~e~~~~---------~Gg~w~ 43 (522)
+.+|+|||+|-.|.+.|.-|.++ |++|+|+|+++. +||.+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~Q 139 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQ 139 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceee
Confidence 47899999999999999999873 799999999873 577655
No 350
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.21 E-value=0.00052 Score=69.23 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=36.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCcccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWI 43 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~ 43 (522)
++||+|||||..|-.+|....-+|+++.++|+++--.|+-.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 48999999999999999999999999999999886666544
No 351
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.14 E-value=8.5e-05 Score=68.01 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=26.9
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
+|+|||+|.+|+.+|..|+..+. +|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 69999999999999999997654 488886554
No 352
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.14 E-value=0.014 Score=60.83 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=30.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC-ceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~~ 37 (522)
++|+|||+|..|+-+|..+.+.|. +|+|+++++.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 689999999999999999999996 6999998653
No 353
>PLN02463 lycopene beta cyclase
Probab=97.12 E-value=0.00086 Score=69.14 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
-+|+|||+|.+|+-+|..|++.+. +|.++.+++.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~ 62 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPL 62 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCcc
Confidence 379999999999999999998654 5999988664
No 354
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.09 E-value=0.005 Score=57.49 Aligned_cols=38 Identities=34% Similarity=0.609 Sum_probs=33.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcC------CceEEEecCCCccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKG------FHPIVFEARSDIGG 40 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g------~~v~i~e~~~~~Gg 40 (522)
.++|+|+|+|..|+++|..|.+++ ++++|||...-.||
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 478999999999999999999976 68999998875554
No 355
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.06 E-value=0.0072 Score=65.93 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=30.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC-ceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~~ 37 (522)
++|+|||+|..|+-+|..+.+.|. +|+++.+++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 589999999999999999999986 6999887643
No 356
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.05 E-value=0.0037 Score=61.41 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=40.0
Q ss_pred ceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccCCCCCCCC
Q 009917 95 HIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFSDVPNIPE 169 (522)
Q Consensus 95 ~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s~~p~~P~ 169 (522)
++.-+++|.+++..+ ++...++++...+++.++++.|.||+|||.. ...|.
T Consensus 294 ~l~~~~ev~~~~~~G---------------------~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~---~~~P~ 344 (436)
T COG3486 294 RLLSLSEVQSVEPAG---------------------DGRYRLTLRHHETGELETVETDAVILATGYR---RAVPS 344 (436)
T ss_pred eeccccceeeeecCC---------------------CceEEEEEeeccCCCceEEEeeEEEEecccc---cCCch
Confidence 344578898888765 3558899988888889999999999999954 45554
No 357
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.03 E-value=0.00053 Score=67.03 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=29.3
Q ss_pred CcEEEECCChhHHHHHHHHHhcC-CceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g-~~v~i~e~~~~ 37 (522)
+|++|||+|++|..+|.+|.+.+ .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 58999999999999999999987 69999999764
No 358
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.03 E-value=0.015 Score=60.73 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=28.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC-ceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~ 36 (522)
++|+|||+|..|+-+|..+++.|. +|++++..+
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 689999999999999999999886 688776544
No 359
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.02 E-value=0.019 Score=62.53 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=29.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC-ceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~ 36 (522)
++|+|||+|..|+.+|..+++.|. +|+|+.+++
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999986 599998764
No 360
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.02 E-value=0.0018 Score=67.17 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
++|+|||+|.+|+-.|..|.+.+.+|+++.++.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 789999999999999999999999999998864
No 361
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.0048 Score=62.17 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
++|+|||+|.||+.+|.+|.+.......|+++.+.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 5799999999999999999987543233888887664
No 362
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0034 Score=59.70 Aligned_cols=37 Identities=30% Similarity=0.496 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
|.+..|-|||||.||-.||.++++.|+.|.++|.++.
T Consensus 1 ~~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 1 MMQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 5667899999999999999999999999999998864
No 363
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.95 E-value=0.0087 Score=67.43 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
++|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 689999999999999999999999999998764
No 364
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.95 E-value=0.0011 Score=66.80 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=27.7
Q ss_pred cCceeEecCcEEEcCCCceecccEEEEecCCCC
Q 009917 344 SQDFSFCEDGIVVDGQTTPLKTDLVILATGFKG 376 (522)
Q Consensus 344 ~~i~~~~~~gv~~~dG~~~~~~D~VI~aTG~~~ 376 (522)
..+.++++++|+++||++ +.+|.||.|.|.++
T Consensus 107 ~~V~~v~~~~v~l~dg~~-~~A~~VI~A~G~~s 138 (370)
T TIGR01789 107 RKAVGLDADGVDLAPGTR-INARSVIDCRGFKP 138 (370)
T ss_pred CEEEEEeCCEEEECCCCE-EEeeEEEECCCCCC
Confidence 347788888899999988 99999999999765
No 365
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.94 E-value=0.0052 Score=58.09 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhc--CCceEEEecCCCcc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK--GFHPIVFEARSDIG 39 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~--g~~v~i~e~~~~~G 39 (522)
++|+||||||..|++.|++|.-+ +++|.|+|+...++
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 57999999999999999998765 89999999987654
No 366
>PRK05868 hypothetical protein; Validated
Probab=96.89 E-value=0.002 Score=65.21 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
++|+|||+|.+|+-+|..|++.+- +|+++.|.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCC
Confidence 579999999999999999998765 4999999875
No 367
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0044 Score=64.29 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEE
Q 009917 76 HNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVI 155 (522)
Q Consensus 76 ~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lv 155 (522)
...+.+-+...|+++|. .|..++.|++|.-.. ++.|-|.+..+ .+++.++|
T Consensus 186 P~~lC~ala~~A~~~GA--~viE~cpV~~i~~~~---------------------~~~~gVeT~~G------~iet~~~V 236 (856)
T KOG2844|consen 186 PAGLCQALARAASALGA--LVIENCPVTGLHVET---------------------DKFGGVETPHG------SIETECVV 236 (856)
T ss_pred HHHHHHHHHHHHHhcCc--EEEecCCcceEEeec---------------------CCccceeccCc------ceecceEE
Confidence 34566778888999998 899999999998764 35577877776 48999999
Q ss_pred Eeeccc
Q 009917 156 LCVGRF 161 (522)
Q Consensus 156 vAtG~~ 161 (522)
-|+|.+
T Consensus 237 NaaGvW 242 (856)
T KOG2844|consen 237 NAAGVW 242 (856)
T ss_pred echhHH
Confidence 999975
No 368
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0014 Score=62.20 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=32.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
|+ +||+|||+|.|||+++..|++.|.+..|+.+..
T Consensus 1 M~-fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MN-FDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred Cc-ccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 44 899999999999999999999999999998764
No 369
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.81 E-value=0.002 Score=61.19 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=39.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCC--Cccccccccccce
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS--DIGGAWIKTVETT 49 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~--~~Gg~w~~~~~~~ 49 (522)
...+|+|||||.+||.+|..|++.|.+|+|+|+.. .+||+-...+-++
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGL 53 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGL 53 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccE
Confidence 35799999999999999999999999999999865 6788644444443
No 370
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0042 Score=61.88 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=29.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~ 35 (522)
.++|+|||||.||..||...++.|.+.+++-.+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 479999999999999999999999987776644
No 371
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.77 E-value=0.012 Score=67.25 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=66.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC-ceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
++|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+. ..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~-------------------------------------~~---- 356 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS-------------------------------------PE---- 356 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh-------------------------------------HH----
Confidence 689999999999999999999996 588998754321 11
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+..++.++ .+..++.|+.+..++ ..-.|++... ++..+++.+|.|+++.|.
T Consensus 357 l~~~L~~~GV--~i~~~~~v~~i~g~~----------------------~v~~V~l~~~-~g~~~~i~~D~V~va~G~-- 409 (985)
T TIGR01372 357 ARAEARELGI--EVLTGHVVAATEGGK----------------------RVSGVAVARN-GGAGQRLEADALAVSGGW-- 409 (985)
T ss_pred HHHHHHHcCC--EEEcCCeEEEEecCC----------------------cEEEEEEEec-CCceEEEECCEEEEcCCc--
Confidence 2334466777 888898898886432 1123455421 133467999999999994
Q ss_pred CCCCC
Q 009917 163 DVPNI 167 (522)
Q Consensus 163 ~~p~~ 167 (522)
.|+.
T Consensus 410 -~Pnt 413 (985)
T TIGR01372 410 -TPVV 413 (985)
T ss_pred -Cchh
Confidence 4554
No 372
>PRK09897 hypothetical protein; Provisional
Probab=96.77 E-value=0.0063 Score=63.98 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
++|+|||+|.+|+=++..|+..... .+|+++.+++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~-l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTP-LSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCC-CcEEEEecCCC
Confidence 5899999999999999999875432 46999998653
No 373
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.76 E-value=0.0014 Score=67.11 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=31.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 201 ~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.++++|+|||+|++|+.+|..|+.... .+|+++.|.|.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~ 74 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPN 74 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 367899999999999999998765432 35999999876
No 374
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.74 E-value=0.027 Score=63.13 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.0
Q ss_pred CcEEEECCChhHHHHHHHHHhc-C-CceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK-G-FHPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~-g-~~v~i~e~~~ 36 (522)
++|+|||||..|+-+|..+.+. | .+|+++.+++
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 6899999999999999998886 5 3799999864
No 375
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.73 E-value=0.0025 Score=64.56 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=34.5
Q ss_pred cccccCCcEEEeecCceeEecCc----EEEcCCCceecccEEEEecCCCC
Q 009917 331 YDKVEEGSIILKKSQDFSFCEDG----IVVDGQTTPLKTDLVILATGFKG 376 (522)
Q Consensus 331 ~~~l~~g~v~v~~~~i~~~~~~g----v~~~dG~~~~~~D~VI~aTG~~~ 376 (522)
.+.+.++++.+....|.++.+++ |+++||++ +.++.||-|+|...
T Consensus 94 ~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~-i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 94 LERAAAGGVIRLNARVTSIEETGDGVLVVLADGRT-IRARVVVDARGPSS 142 (374)
T ss_pred HHHhhhCCeEEEccEEEEEEecCceEEEEECCCCE-EEeeEEEECCCccc
Confidence 34444566777777788887654 58889998 99999999999764
No 376
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.63 E-value=0.0063 Score=64.31 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=28.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
.|+|||||.+|+++|..+++.+. +|.++.+.+
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~ 37 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL 37 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence 69999999999999999998765 499998864
No 377
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.61 E-value=0.063 Score=58.40 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=30.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC-ceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~~ 37 (522)
++|+|||+|..|+-+|..+.+.|. +|+++.+++.
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 689999999999999999999885 7999988653
No 378
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0057 Score=58.32 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=76.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
-+-+|||||+.+|.+|-.|.-.|++|+|.-|+--+ +.| .+++.+.+
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L--------------------------------rGF--Dqdmae~v 244 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL--------------------------------RGF--DQDMAELV 244 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeec--------------------------------ccc--cHHHHHHH
Confidence 36789999999999999999999999999885321 222 16788888
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGR 160 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~ 160 (522)
.+..+.+|+ .+.-.+..+.|+..+ +++..|...+..++++-...||.|+.|.|.
T Consensus 245 ~~~m~~~Gi--kf~~~~vp~~Veq~~---------------------~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 245 AEHMEERGI--KFLRKTVPERVEQID---------------------DGKLRVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred HHHHHHhCC--ceeecccceeeeecc---------------------CCcEEEEeecccccccccchhhhhhhhhcc
Confidence 888888887 555555667777765 355677777665566667899999999994
No 379
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.60 E-value=0.1 Score=54.77 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=29.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC-ceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF-HPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~-~v~i~e~~~~ 37 (522)
++|+|||+|..|+-+|..+++.|. +|+++|..+.
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 689999999999999998888875 7999987654
No 380
>PRK02106 choline dehydrogenase; Validated
Probab=96.60 E-value=0.0022 Score=68.65 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHh-cCCceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLL-KGFHPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~-~g~~v~i~e~~~ 36 (522)
.+|+||||+|.+|+.+|.+|.+ .|.+|+|+|+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4799999999999999999999 799999999985
No 381
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.60 E-value=0.06 Score=57.73 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcC-CceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKG-FHPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g-~~v~i~e~~~ 36 (522)
.++|+|||+|..|+-++..+.+.+ .+++|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 368999999999999999888888 5688888754
No 382
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.56 E-value=0.0078 Score=58.96 Aligned_cols=101 Identities=23% Similarity=0.307 Sum_probs=69.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhc----CCc-eEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCCh
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLK----GFH-PIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDH 76 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~----g~~-v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (522)
+++.|.|||.|+-|-.+|..|.+. |.+ ..||+..-..+.. .+.
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~ki----------------------------LPe---- 393 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKI----------------------------LPE---- 393 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhh----------------------------hHH----
Confidence 357899999999999999999873 444 3466654322100 111
Q ss_pred hHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEE
Q 009917 77 NQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVIL 156 (522)
Q Consensus 77 ~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvv 156 (522)
-+.++-..-.++-|+ .++-|..|.++.+.. +.-.+.+.++ .++..|.||+
T Consensus 394 -yls~wt~ekir~~GV--~V~pna~v~sv~~~~----------------------~nl~lkL~dG-----~~l~tD~vVv 443 (659)
T KOG1346|consen 394 -YLSQWTIEKIRKGGV--DVRPNAKVESVRKCC----------------------KNLVLKLSDG-----SELRTDLVVV 443 (659)
T ss_pred -HHHHHHHHHHHhcCc--eeccchhhhhhhhhc----------------------cceEEEecCC-----CeeeeeeEEE
Confidence 122333344566677 788999999998865 4467788887 6899999999
Q ss_pred eecccCCCCCC
Q 009917 157 CVGRFSDVPNI 167 (522)
Q Consensus 157 AtG~~s~~p~~ 167 (522)
|+|. .|+.
T Consensus 444 avG~---ePN~ 451 (659)
T KOG1346|consen 444 AVGE---EPNS 451 (659)
T ss_pred EecC---CCch
Confidence 9994 5654
No 383
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.54 E-value=0.002 Score=65.55 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=30.0
Q ss_pred CcccccccCCcEEEeecC-ceeEe--cCc---EEEcCCCceecccEEEEecCCCC
Q 009917 328 EKFYDKVEEGSIILKKSQ-DFSFC--EDG---IVVDGQTTPLKTDLVILATGFKG 376 (522)
Q Consensus 328 ~~~~~~l~~g~v~v~~~~-i~~~~--~~g---v~~~dG~~~~~~D~VI~aTG~~~ 376 (522)
+.+.+.+++-+|+++.+. |.++. +++ |.++++.+ +.+|.||+|||-..
T Consensus 113 ~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~-~~a~~vILAtGG~S 166 (409)
T PF03486_consen 113 DALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGE-YEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEE-EEESEEEE----SS
T ss_pred HHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCccc-ccCCEEEEecCCCC
Confidence 445566777889998776 77774 444 66656666 99999999999775
No 384
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.54 E-value=0.0015 Score=64.69 Aligned_cols=47 Identities=34% Similarity=0.466 Sum_probs=40.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc--cccce
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK--TVETT 49 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~--~~~~~ 49 (522)
..|++|||+|..||++|..|++.|.+|+++|++..+||.-.. ..||.
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGf 62 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGF 62 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhcccc
Confidence 479999999999999999999999999999999888886554 55553
No 385
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.50 E-value=0.028 Score=63.13 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.2
Q ss_pred CcEEEECCChhHHHHHHHHHhc-CC-ceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLK-GF-HPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~-g~-~v~i~e~~~ 36 (522)
++|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 6899999999999999998885 75 799999864
No 386
>PRK07236 hypothetical protein; Provisional
Probab=96.45 E-value=0.0073 Score=61.47 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 202 ~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
...+|+|||+|.+|+-+|..|++.+- +|+++.|.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCC
Confidence 35789999999999999999999765 4999999864
No 387
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.41 E-value=0.028 Score=63.97 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCc-eEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFH-PIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~-v~i~e~~~ 36 (522)
++|+|||||..|+-+|..+.+.|.+ |+++.++.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 6899999999999999999999985 77777653
No 388
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.40 E-value=0.028 Score=56.26 Aligned_cols=62 Identities=18% Similarity=0.301 Sum_probs=49.1
Q ss_pred CCCCC---ChhHHHHHHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCce
Q 009917 70 TTDFP---DHNQVLDYIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHST 146 (522)
Q Consensus 70 ~~~~~---~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~ 146 (522)
...|| ...++.+-|...+++.++ .++++++|.+|+ . +.|.|.+..+.
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i~--~----------------------~~~~v~~~~~~---- 125 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGV--QFHTRHRWIGWQ--G----------------------GTLRFETPDGQ---- 125 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEe--C----------------------CcEEEEECCCc----
Confidence 45666 567888999999999999 899999999992 2 23778775431
Q ss_pred eEEEeCEEEEeeccc
Q 009917 147 EVHQVDFVILCVGRF 161 (522)
Q Consensus 147 ~~~~~d~lvvAtG~~ 161 (522)
.++.||+||+|||..
T Consensus 126 ~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 126 STIEADAVVLALGGA 140 (376)
T ss_pred eEEecCEEEEcCCCc
Confidence 468999999999986
No 389
>PRK13984 putative oxidoreductase; Provisional
Probab=96.38 E-value=0.094 Score=56.78 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=25.1
Q ss_pred CcEEEECCChhHHHHHHHHHhcCC------ceEEEe
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGF------HPIVFE 33 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~------~v~i~e 33 (522)
++|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 689999999999999999988642 566653
No 390
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.034 Score=54.15 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=69.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
++|+|||+|-+++-.|..|.+.+-+|+++=|++.+ -..+.+.+-+
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~-----------------------------------ra~~~~~~~l 188 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF-----------------------------------RAEEILVERL 188 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc-----------------------------------CcCHHHHHHH
Confidence 59999999999999999999999999999887652 1123333333
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
++. -++ .+.+++.|.++.-++ .-.|.+++.. +++..+.+|.|+++.|+.
T Consensus 189 ~~~---~~i--~~~~~~~i~ei~G~~-----------------------v~~v~l~~~~-~~~~~~~~~gvf~~iG~~ 237 (305)
T COG0492 189 KKN---VKI--EVLTNTVVKEILGDD-----------------------VEGVVLKNVK-GEEKELPVDGVFIAIGHL 237 (305)
T ss_pred Hhc---CCe--EEEeCCceeEEecCc-----------------------cceEEEEecC-CceEEEEeceEEEecCCC
Confidence 322 145 778898998887542 1246666654 666789999999999953
No 391
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.33 E-value=0.006 Score=62.13 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=28.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|+-+|..|++.+. +|+++.+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCC
Confidence 48999999999999999987654 5999998764
No 392
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.32 E-value=0.018 Score=55.27 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=74.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
+++++|+|||+.++..|--+.-.|.++.+|=|.+.+ .+.| .+.+.+.
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv-------------------------------LR~F--D~~i~~~ 235 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV-------------------------------LRGF--DEMISDL 235 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh-------------------------------hcch--hHHHHHH
Confidence 479999999999999999999999999888887643 1222 1455566
Q ss_pred HHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeecccC
Q 009917 83 IQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRFS 162 (522)
Q Consensus 83 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~s 162 (522)
+.+-.+.-++ +++-++.++.+.+.. ++...+....+ ....+|.|+.|+|
T Consensus 236 v~~~~~~~gi--nvh~~s~~~~v~K~~---------------------~g~~~~i~~~~-----~i~~vd~llwAiG--- 284 (478)
T KOG0405|consen 236 VTEHLEGRGI--NVHKNSSVTKVIKTD---------------------DGLELVITSHG-----TIEDVDTLLWAIG--- 284 (478)
T ss_pred HHHHhhhcce--eecccccceeeeecC---------------------CCceEEEEecc-----ccccccEEEEEec---
Confidence 6666666677 788888999988765 23344444443 3456999999999
Q ss_pred CCCCCCCC
Q 009917 163 DVPNIPEF 170 (522)
Q Consensus 163 ~~p~~P~~ 170 (522)
..|+.-.+
T Consensus 285 R~Pntk~L 292 (478)
T KOG0405|consen 285 RKPNTKGL 292 (478)
T ss_pred CCCCcccc
Confidence 55666543
No 393
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.28 E-value=0.01 Score=60.57 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 203 gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
..+|+|||+|.+|+=+|..|++.+- +|+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcc
Confidence 4689999999999999999998765 4999999875
No 394
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.28 E-value=0.0048 Score=56.47 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=30.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEc
Q 009917 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (522)
Q Consensus 200 ~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r 237 (522)
..+||+|+|||||.+|.--+..|.+.+.. ||++..
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~---VtVvsp 40 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQ---LRVIAE 40 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCE---EEEEcC
Confidence 36899999999999999999999997764 998874
No 395
>PLN02697 lycopene epsilon cyclase
Probab=96.26 E-value=0.0065 Score=63.84 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
-+|+|||+|.+|+-+|..+++.+. +|.++.+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~ 141 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDL 141 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCC---cEEEecCcc
Confidence 469999999999999999998764 499987653
No 396
>PRK07588 hypothetical protein; Provisional
Probab=96.25 E-value=0.012 Score=60.12 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.8
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|.+|+=+|..|++.+. +|+++.|.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCC
Confidence 379999999999999999998765 4999998865
No 397
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.16 E-value=0.013 Score=61.78 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=27.9
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
+|+|||+|.+|+++|..++..+. +|.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGA---KTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCC---CEEEEeccc
Confidence 48999999999999999998765 499998864
No 398
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.14 E-value=0.0082 Score=58.34 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=28.8
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|+-+|..|++.+. +|+++.|.+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCC
Confidence 48999999999999999998765 4999998764
No 399
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.10 E-value=0.0068 Score=61.24 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
+||+|||+|++|+++|..|.+.|.+++|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 489999999999999999999999999999875
No 400
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.09 E-value=0.0051 Score=65.45 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHhcC-CceEEEecCCC
Q 009917 5 QIAIVGAGVSGLLACKYLLLKG-FHPIVFEARSD 37 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g-~~v~i~e~~~~ 37 (522)
|++|||||.+|+.+|.+|.+.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6999999999999999999988 79999999863
No 401
>PRK06753 hypothetical protein; Provisional
Probab=96.07 E-value=0.025 Score=57.19 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=29.8
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|+=+|..|++.+. +|+++.|.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 69999999999999999999765 4999999876
No 402
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.02 E-value=0.0059 Score=57.80 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcc
Q 009917 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (522)
Q Consensus 203 gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~ 238 (522)
.-+|+|||||.-|+-+|..+.+.-+. .+|-++...
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~-g~vgIvep~ 73 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGS-GSVGIVEPA 73 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCC-CceEEecch
Confidence 34699999999999999999987554 567777644
No 403
>PRK09126 hypothetical protein; Provisional
Probab=96.00 E-value=0.028 Score=57.28 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=29.8
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
-+|+|||+|.+|+-+|..|++.+- +|+++.|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCc
Confidence 359999999999999999998765 4999998875
No 404
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.99 E-value=0.014 Score=59.60 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|.+|+-+|..|++.+- +|+++.|.+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~---~v~liE~~~~ 40 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGL---SVALVEGREP 40 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCC---EEEEEeCCCC
Confidence 469999999999999999998764 4999999763
No 405
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.98 E-value=0.02 Score=54.57 Aligned_cols=37 Identities=24% Similarity=0.144 Sum_probs=30.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 201 ~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
...-+|+|||+|.+|+-+|..+++.+. +|.++.+.+.
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCC
Confidence 344579999999999999999988654 4999998764
No 406
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.94 E-value=0.011 Score=59.89 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=29.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhhc-CCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTAN-GLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~-~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|+-+|..|++.+ -. |+++.|.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCc
Confidence 3899999999999999999987 54 999999865
No 407
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.92 E-value=0.027 Score=57.73 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=34.7
Q ss_pred cccccccCCcEEEeecC-ceeEecC--c--EEEcCCCceecccEEEEecCCCCC
Q 009917 329 KFYDKVEEGSIILKKSQ-DFSFCED--G--IVVDGQTTPLKTDLVILATGFKGD 377 (522)
Q Consensus 329 ~~~~~l~~g~v~v~~~~-i~~~~~~--g--v~~~dG~~~~~~D~VI~aTG~~~~ 377 (522)
.+.+.+.+.++++..+. +.+++.+ + |++++|++ +.+|.||.|.|....
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~-~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQ-LRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCE-EEeCEEEEecCCCch
Confidence 34455566678887764 6676433 3 66788887 999999999998753
No 408
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.89 E-value=0.021 Score=52.76 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=27.4
Q ss_pred EEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 206 VTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 206 VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
.+|||||..|+-+|..|+..-+. .+|.++..++
T Consensus 2 fivvgggiagvscaeqla~~~ps-a~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPS-AEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCC-CcEEEEeccH
Confidence 57999999999999999987665 4687777665
No 409
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.87 E-value=0.045 Score=55.74 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=36.7
Q ss_pred Cccccccc-CCcEEEeecC-ceeEecCc----EEEc-CCCceecccEEEEecCCCC
Q 009917 328 EKFYDKVE-EGSIILKKSQ-DFSFCEDG----IVVD-GQTTPLKTDLVILATGFKG 376 (522)
Q Consensus 328 ~~~~~~l~-~g~v~v~~~~-i~~~~~~g----v~~~-dG~~~~~~D~VI~aTG~~~ 376 (522)
..+.+.+. .++|++..+. ++.+..++ ++++ ||++ +.+|.||-|-|.+.
T Consensus 108 ~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~-~~a~llVgADG~~S 162 (387)
T COG0654 108 NALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET-LDADLLVGADGANS 162 (387)
T ss_pred HHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE-EecCEEEECCCCch
Confidence 34445554 4679998876 88776554 7888 9997 99999999999875
No 410
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.84 E-value=0.0083 Score=66.31 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=31.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 201 ~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
..||+|+|||+|++|+.+|..|+..+.. ||++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEcccc
Confidence 5799999999999999999999987654 99999754
No 411
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.79 E-value=0.015 Score=59.55 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=29.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|+=+|..|++.+.. .+|+++.|.+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g-~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPH-LPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCC-CEEEEEeCCCc
Confidence 599999999999999999987521 35999999874
No 412
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.76 E-value=0.07 Score=54.54 Aligned_cols=94 Identities=21% Similarity=0.228 Sum_probs=65.4
Q ss_pred EEECCChhHHHHH-HHHH----hcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHH
Q 009917 7 AIVGAGVSGLLAC-KYLL----LKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLD 81 (522)
Q Consensus 7 vIIGaG~aGl~~a-~~l~----~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (522)
+|++-|+-|+..+ ..+. +.|.+|++++..+.. .++.++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 6788888888887 3333 359999999875431 12346777
Q ss_pred HHHHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 82 YIQSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 82 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
.+.+..++.++ .+..+++|.+++..+ ++-.+.... +++...+.+|.||+|+|.+
T Consensus 264 aL~~~l~~~Gv--~I~~g~~V~~v~~~~----------------------~~V~~v~~~--~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 264 ALRRAFERLGG--RIMPGDEVLGAEFEG----------------------GRVTAVWTR--NHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEEeC----------------------CEEEEEEee--CCceEEEECCEEEEeCCCc
Confidence 88887877888 899999999998754 112222221 2445678999999999965
No 413
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.012 Score=61.71 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=30.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 201 VKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 201 ~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
+++++|+|||+|.+|+++|..|+..+. +|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 568899999999999999999988765 499987654
No 414
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.024 Score=55.20 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|++|+=.|..|.+.... .+|+++.+.|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~-~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPN-AHVDIFEKLPV 56 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCC-CeeEeeecCCc
Confidence 4999999999999999999985332 45999998775
No 415
>PRK07045 putative monooxygenase; Reviewed
Probab=95.66 E-value=0.012 Score=59.83 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|.+|+=+|..|++.+- +|+++.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~---~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGH---SVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCC---cEEEEeCCCc
Confidence 379999999999999999999765 4999999876
No 416
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.65 E-value=0.011 Score=62.57 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
+.|+||||+|.+|..+|..|.+.|.+|+|+|+..
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4799999999999999999998899999999984
No 417
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.048 Score=56.35 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 202 ~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
...+|+|||+|.||+=+|..|.+.+.. .+.++.+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccC
Confidence 346799999999999999999998764 288888874
No 418
>PRK06834 hypothetical protein; Provisional
Probab=95.61 E-value=0.028 Score=58.95 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|.+|+=+|..|+..+- +|+++.|.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 479999999999999999999765 4999998875
No 419
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.60 E-value=0.021 Score=52.14 Aligned_cols=35 Identities=26% Similarity=0.154 Sum_probs=30.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEc
Q 009917 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (522)
Q Consensus 200 ~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r 237 (522)
+.+||+|+|||+|..|.-.+..|.+.+.. |+++.+
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~---V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAH---IVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEcC
Confidence 47899999999999999999999987654 998864
No 420
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.54 E-value=0.014 Score=60.31 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=29.4
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
-+|+|||+|.+|+-+|..|++.+. +|.++.|.+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~ 39 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNS 39 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCC
Confidence 369999999999999999998765 4999998753
No 421
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.53 E-value=0.015 Score=50.82 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
+|+|||||..|.++|..|.++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999999864
No 422
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.46 E-value=0.016 Score=52.20 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=27.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
++|+|||.|+.||.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998764
No 423
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.38 E-value=0.043 Score=57.94 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=29.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~ 35 (522)
.++|+|||+|.+|.-.|..|.+...+|.+.-|+
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 379999999999999999999988888887775
No 424
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.35 E-value=0.024 Score=52.18 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=29.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEc
Q 009917 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYR 237 (522)
Q Consensus 200 ~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r 237 (522)
..++++|+|||||..|..=+..|.+.+.. ||++..
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~---VtVVap 56 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCY---VYILSK 56 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEcC
Confidence 36789999999999999988888887754 999873
No 425
>PLN02785 Protein HOTHEAD
Probab=95.35 E-value=0.019 Score=61.47 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
.+|++|||+|.+|+.+|.+|.+ +.+|+|+|+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 4799999999999999999999 689999999863
No 426
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.32 E-value=0.044 Score=56.84 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=27.6
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|..|.=.|..|++......+|+++.+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 699999999999999999998754356999987643
No 427
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.32 E-value=0.037 Score=50.55 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=23.4
Q ss_pred EEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 207 TVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 207 vVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
+|||+|.+|+-+|..|.+.+. .+|+++.|.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~--~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGI--DPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCC--CcEEEEeCCC
Confidence 699999999999999998764 2499999874
No 428
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.29 E-value=0.061 Score=55.29 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=29.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|+=+|..|++.+. -+|+++.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~--~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSH--LNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC--CCEEEEecCCc
Confidence 79999999999999999998753 14999999875
No 429
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.27 E-value=0.042 Score=55.92 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|.+|+-+|..|++.+. +|+++.|.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCC
Confidence 469999999999999999998764 4999998764
No 430
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.12 Score=52.03 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=26.1
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~ 238 (522)
.|+|||||..|+|.|.+.++.+.. .+++..+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGAR---TLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCc---eEEeecc
Confidence 699999999999999999998865 6666654
No 431
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.19 E-value=0.12 Score=53.92 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=28.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
++|+|||+|.+|+=.|..+++.+. +|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~---~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGF---DVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 479999999999999999988764 499998764
No 432
>PRK06184 hypothetical protein; Provisional
Probab=95.10 E-value=0.012 Score=62.17 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
-+|+|||+|.+|+=+|..|++.+-. |+++.|.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 4699999999999999999998754 999999875
No 433
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.10 E-value=0.028 Score=57.14 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=28.5
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
+|+|||+|.+|.=+|..|++.+- +|+++.+.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGR---SVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCC
Confidence 69999999999999999998765 499999865
No 434
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.09 E-value=0.029 Score=57.34 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
-.|+|||+|..|+|.|.+.++.+.+ +.++.-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCe---EEEEEcCC
Confidence 3699999999999999999988764 77776553
No 435
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.02 E-value=0.049 Score=55.51 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=27.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhh---cCCCCceEEEEcc
Q 009917 204 KRVTVVGLQKSALDIAMECTTA---NGLENPCTVLYRT 238 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~---~~~~~~Vt~v~r~ 238 (522)
-+|+|||+|.+|.=+|..|++. +- +|+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~---~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGL---PVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCC---EEEEEeCC
Confidence 3699999999999999999986 54 59999985
No 436
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.029 Score=52.26 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=31.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
++++|||+|.-|...|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999999753
No 437
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=94.96 E-value=0.029 Score=57.15 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=28.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
-+|+|||+|.+|+-+|..|++.+. +|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCC
Confidence 469999999999999999998764 499999875
No 438
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.95 E-value=0.079 Score=58.40 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 200 ~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.-.||+|+|||+|++|+-.|..|.+.+.. |++..|+.+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr 1819 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDR 1819 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCC
Confidence 35799999999999999999999988764 999999865
No 439
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.91 E-value=0.043 Score=55.79 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=29.3
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|+-+|..|++.+. +|+++.|.+.
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~ 39 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGL---RVALLAPRAP 39 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCC
Confidence 69999999999999999998764 4999998865
No 440
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.88 E-value=0.069 Score=56.66 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=66.5
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
.+-+|||+|.=||.+|..|...|++++|++-.+.+ +. ...+.+ -...|
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--------------------------Me---rQLD~~---ag~lL 193 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--------------------------ME---RQLDRT---AGRLL 193 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH--------------------------HH---HhhhhH---HHHHH
Confidence 45699999999999999999999999999865432 10 111112 22445
Q ss_pred HHHHHhcCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASHFDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
+...++.++ ++++++.++.+-... ..-.+...++ ..+.+|.||.|+|..
T Consensus 194 ~~~le~~Gi--~~~l~~~t~ei~g~~----------------------~~~~vr~~DG-----~~i~ad~VV~a~GIr 242 (793)
T COG1251 194 RRKLEDLGI--KVLLEKNTEEIVGED----------------------KVEGVRFADG-----TEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHhhcc--eeecccchhhhhcCc----------------------ceeeEeecCC-----CcccceeEEEecccc
Confidence 666677787 666666555554322 2234666776 579999999999954
No 441
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.87 E-value=0.045 Score=55.49 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=29.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|.=+|..|++.+. +|+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL---KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCc
Confidence 48999999999999999998765 4999999875
No 442
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.25 Score=47.77 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=62.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHH
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDY 82 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 82 (522)
-+||+|||+|-+|+.||..|+----.|+++|=.+.+ ..+++
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL------------------------------------kAD~V--- 394 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------------------------------------KADAV--- 394 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh------------------------------------hhHHH---
Confidence 379999999999999999998654568888854331 11222
Q ss_pred HHHHHHh-cCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 83 IQSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 83 l~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
|++-... -++ .|..|..-+.|.-++ ++---+...+..+|+...+.-+-|++-.|..
T Consensus 395 Lq~kl~sl~Nv--~ii~na~Ttei~Gdg---------------------~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~ 451 (520)
T COG3634 395 LQDKLRSLPNV--TIITNAQTTEVKGDG---------------------DKVTGLEYRDRVSGEEHHLELEGVFVQIGLL 451 (520)
T ss_pred HHHHHhcCCCc--EEEecceeeEEecCC---------------------ceecceEEEeccCCceeEEEeeeeEEEEecc
Confidence 2222222 233 455666666665443 1112255666666888888999999999943
No 443
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.84 E-value=0.072 Score=54.47 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
++|+|||+|.+|+=+|..|++.+- +|+++.|.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 689999999999999999998765 4999999875
No 444
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.79 E-value=0.029 Score=45.12 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecC
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~ 35 (522)
+.++|+|||+|..|..-+..|++.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4578999999999999999999999999999986
No 445
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.78 E-value=0.049 Score=49.87 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecC
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~ 35 (522)
..++|+|||||..|..-+..|++.|.+|+|++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3478999999999999999999999999999864
No 446
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.76 E-value=0.038 Score=56.71 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcCCceEEEecCCCccccccc-ccc--ceeecC
Q 009917 13 VSGLLACKYLLLKGFHPIVFEARSDIGGAWIK-TVE--TTMLQT 53 (522)
Q Consensus 13 ~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~-~~~--~~~~~~ 53 (522)
.|||+||..|++.|++|+|||+++.+||.... ..+ +..++.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~ 44 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFEL 44 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEES
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecC
Confidence 48999999999999999999999999997766 444 455444
No 447
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.76 E-value=0.056 Score=55.71 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=33.2
Q ss_pred hccCCCEEEEEcCC-CCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 199 NLVKGKRVTVVGLQ-KSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 199 ~~~~gk~VvVIG~G-~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
..+.||+|+|-||| ..|-|++..+++.++ +++.++.|+..
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p--~~i~l~~~~E~ 286 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKFNP--KEIILFSRDEY 286 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhcCC--CEEEEecCchH
Confidence 45889999999975 669999999999865 57999998753
No 448
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.73 E-value=0.035 Score=56.87 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
|..++|+|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6778999999999999999999999999999998764
No 449
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=94.73 E-value=0.097 Score=49.45 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=29.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcC-------CceEEEecCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKG-------FHPIVFEARS 36 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g-------~~v~i~e~~~ 36 (522)
|...+|+|||||..||++|..+++.. .+|+|++.+.
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 45679999999999999998888843 4788887654
No 450
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=94.71 E-value=0.035 Score=57.25 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=25.7
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.|+|||||.+|+-.|..+++.+. +|.|+.|.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCC---EEEEEECCcc
Confidence 48999999999999999999875 4999998764
No 451
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.67 E-value=0.042 Score=57.21 Aligned_cols=35 Identities=37% Similarity=0.585 Sum_probs=32.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
..++|+|||+|..|+++|..|++.|.+|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45899999999999999999999999999999864
No 452
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.65 E-value=0.088 Score=57.63 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=29.3
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
.+|+|||+|.+|+-+|..|++.+. +|+++.|..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~---~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW---QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC---eEEEEecCC
Confidence 589999999999999999998865 499999863
No 453
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.63 E-value=0.024 Score=58.29 Aligned_cols=38 Identities=29% Similarity=0.305 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 200 ~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
...+|+|+|||+|+-|+.+|..|+..+.. ||++.|.+.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~ 157 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVAL 157 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCC
Confidence 35779999999999999999999998765 999887654
No 454
>PRK08244 hypothetical protein; Provisional
Probab=94.57 E-value=0.11 Score=54.82 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|.+|+-+|..|++.+- +|+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGV---KTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 359999999999999999998775 4999999875
No 455
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.57 E-value=0.039 Score=54.39 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
++|.|||+|+.||..|..|++.|++|+++|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999865
No 456
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=94.55 E-value=0.062 Score=54.71 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=27.8
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~ 238 (522)
+|+|||+|++|+-+|..|++.+. +|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGI---ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 59999999999999999998764 49999987
No 457
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.50 E-value=0.049 Score=48.76 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
+|+|||||.-|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998753
No 458
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.50 E-value=0.061 Score=46.94 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=30.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEec
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEA 34 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~ 34 (522)
+.++|+|||||..|..-+..|.+.|.+|+|+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 357899999999999999999999999999953
No 459
>PRK11445 putative oxidoreductase; Provisional
Probab=94.47 E-value=0.087 Score=52.83 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=28.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|.-+|..|++. - +|+++.|.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCc
Confidence 599999999999999999876 4 4999999875
No 460
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.46 E-value=0.048 Score=53.16 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
|..++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 445789999999999999999999999999999864
No 461
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.40 E-value=0.053 Score=52.70 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
|.-++|+|||+|.-|.+.|..|++.|++|+++|+++
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 555789999999999999999999999999999864
No 462
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.39 E-value=0.044 Score=57.16 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCceEEEecCCCc
Q 009917 5 QIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDI 38 (522)
Q Consensus 5 ~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~ 38 (522)
+|+|||+|.+|+++|..|.+.|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6999999999999999999999999999987653
No 463
>PRK07190 hypothetical protein; Provisional
Probab=94.38 E-value=0.026 Score=59.18 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|.+|+=+|..|+..+. +|+++.|.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCc
Confidence 469999999999999999988765 4999998875
No 464
>PRK08013 oxidoreductase; Provisional
Probab=94.34 E-value=0.099 Score=53.48 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|.+|.=+|..|++.+- +|+++.|.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCC
Confidence 469999999999999999998765 4999999875
No 465
>PRK10015 oxidoreductase; Provisional
Probab=94.33 E-value=0.025 Score=58.30 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=29.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|+-+|..|++.+. +|.++.|.+.
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~ 39 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGL---DVLVIERGDS 39 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCC
Confidence 69999999999999999998765 4999998764
No 466
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.25 E-value=0.027 Score=45.30 Aligned_cols=37 Identities=35% Similarity=0.201 Sum_probs=29.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 200 ~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
..+|++|+|||+|..|..-+..|.+.+.+ ||++....
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~---v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAK---VTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBE---EEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEECCch
Confidence 36899999999999999999999987754 99998653
No 467
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=94.12 E-value=0.11 Score=53.16 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=28.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRT 238 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~ 238 (522)
.+|+|||+|.+|+=+|..|++.+- +|+++.|.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~---~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDL---RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCC---EEEEEcCC
Confidence 479999999999999999998764 49999985
No 468
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.11 E-value=0.14 Score=53.16 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
-+|+|||+|.+|.-+|..|++.+. +|.++.|.+.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 479999999999999999998765 4999998754
No 469
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.05 E-value=0.077 Score=46.95 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
..+|+|+|+|.+|..|+..|...|.+++++|.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4689999999999999999999999999999864
No 470
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.03 E-value=0.084 Score=48.22 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=30.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhcCCceEEEecC
Q 009917 2 EKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (522)
Q Consensus 2 ~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~ 35 (522)
+.++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3579999999999999999999999999999763
No 471
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.02 E-value=0.069 Score=54.49 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=34.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
.+||+|+|.|..-..+|..|.+.|.+|+.+|+++.-||.|..
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 489999999999999999999999999999999999999986
No 472
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.97 E-value=0.11 Score=44.21 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=30.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCc-eEEEecC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFH-PIVFEAR 35 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~-v~i~e~~ 35 (522)
.++|+|||||-+|-+++..|.+.|.+ ++|+.|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 47899999999999999999999986 9999985
No 473
>PRK07538 hypothetical protein; Provisional
Probab=93.97 E-value=0.12 Score=53.10 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=29.4
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|+|||+|.+|+=+|..|++.+- +|+++.|.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence 69999999999999999998765 4999999875
No 474
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=93.93 E-value=0.37 Score=50.91 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
-+|+|||+|.+|+=.|..+++.+. +|.++.+.+.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga---~VivlEK~~~ 95 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGM---NPVILEKMPV 95 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence 369999999999999999988765 4999998764
No 475
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.90 E-value=0.072 Score=51.86 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=33.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
|.-++|+|||+|.-|...|..|++.|++|+++|+++.
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5446899999999999999999999999999998753
No 476
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=93.85 E-value=0.099 Score=52.71 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 202 KGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 202 ~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
-.++|+|||||.+|++.|.+|++.+-. |+++.+.|.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~---v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFK---VYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCe---EEEEecCCc
Confidence 357899999999999999999998764 999999875
No 477
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=93.84 E-value=0.14 Score=54.54 Aligned_cols=34 Identities=24% Similarity=0.124 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||+|.+|+=+|..|++.+. +|+++.|.+.
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~ 44 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT 44 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 569999999999999999998765 4999999875
No 478
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.82 E-value=0.087 Score=51.88 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=32.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~ 35 (522)
|++++|+|||+|.-|...|..|.+.|.+|+++.|+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 45679999999999999999999999999999885
No 479
>PRK04148 hypothetical protein; Provisional
Probab=93.70 E-value=0.07 Score=44.74 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=30.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
++|++||.| .|...|..|.+.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999998765
No 480
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.68 E-value=0.084 Score=51.13 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=33.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 1 MEKKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 1 m~~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
|.-++|+|||+|.-|...|..|++.|++|+++|.++.
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 5546899999999999999999999999999998653
No 481
>PRK06126 hypothetical protein; Provisional
Probab=93.58 E-value=0.04 Score=58.87 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 203 GKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 203 gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
..+|+|||+|.+|+=+|..|++.+-. |+++.|.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 35799999999999999999998754 999998764
No 482
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.54 E-value=0.097 Score=51.35 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=31.6
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
++|+|||+|.-|...|..++..|++|+++|.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6799999999999999999999999999998753
No 483
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.46 E-value=0.094 Score=50.84 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.7
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
.+|+|||+|.-|...|..|+..|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5899999999999999999999999999998754
No 484
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.44 E-value=0.086 Score=51.76 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=31.4
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
++|+|||+|.-|.+.|..|++.|++|+++|+++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998753
No 485
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.40 E-value=0.084 Score=52.13 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhc----CCceEEEecC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK----GFHPIVFEAR 35 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~----g~~v~i~e~~ 35 (522)
++||+|+|||+.|+++|..|... ..++.++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 57999999999999999999874 4589999987
No 486
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=93.24 E-value=0.21 Score=49.58 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.+|+|||||.+|+-.|..|.+.+-. |.++.++..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGID---VVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence 5799999999999999999998865 888876543
No 487
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.19 E-value=0.089 Score=45.89 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=30.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEE
Q 009917 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLY 236 (522)
Q Consensus 200 ~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~ 236 (522)
+.+|++|+|||||..|...+..|.+.+.. |+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~---V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF---VTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEc
Confidence 47899999999999999999999987654 99884
No 488
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.10 E-value=0.11 Score=50.58 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=31.3
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCC
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSD 37 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~ 37 (522)
++|+|||+|.-|...|..|++.|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4799999999999999999999999999998753
No 489
>PRK06996 hypothetical protein; Provisional
Probab=93.02 E-value=0.2 Score=51.11 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHhhhcC-CCCceEEEEccc
Q 009917 203 GKRVTVVGLQKSALDIAMECTTANG-LENPCTVLYRTE 239 (522)
Q Consensus 203 gk~VvVIG~G~sg~dia~~l~~~~~-~~~~Vt~v~r~~ 239 (522)
..+|+|||+|..|.-+|..|++.+. .+.+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 3579999999999999999998652 113599999875
No 490
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=92.99 E-value=0.065 Score=54.76 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=27.0
Q ss_pred EEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 207 TVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 207 vVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
+|||+|.+|+=+|..+++.+. +|+++.|.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~---~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGL---SVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCC---cEEEEecCcc
Confidence 599999999999999998764 4999998765
No 491
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.96 E-value=0.12 Score=43.86 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 200 LVKGKRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 200 ~~~gk~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
..++++|+|||+|-+|--++..|+..+. ++|+++.|+..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~--~~i~i~nRt~~ 47 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGA--KEITIVNRTPE 47 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTS--SEEEEEESSHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCC--CEEEEEECCHH
Confidence 4789999999999999999999999864 46999999753
No 492
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=92.92 E-value=0.081 Score=38.83 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=25.6
Q ss_pred EEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 208 VVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 208 VIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
|||+|.||+-+|..|++.+. +|+++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS---EEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC---cEEEEecCcc
Confidence 89999999999999999754 5999998865
No 493
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.58 Score=42.44 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=67.8
Q ss_pred CcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccccccceeecCCccceeecCCCCCCCCCCCCCChhHHHHHH
Q 009917 4 KQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIKTVETTMLQTPKQLYQFSDYPWPDSVTTDFPDHNQVLDYI 83 (522)
Q Consensus 4 ~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 83 (522)
+-.+|||+|-+.+.-|..|.+.+.+|-|+-|++.+ -.... +
T Consensus 158 k~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f-----------------------------------RAs~~----M 198 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF-----------------------------------RASKI----M 198 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh-----------------------------------hHHHH----H
Confidence 56899999999999999999999999999987642 11122 2
Q ss_pred HHHHHh-cCCccceEeeeeEEEEEEcCCCCcccccccccCCCCCCCCCCCcEEEEEecCCCCceeEEEeCEEEEeeccc
Q 009917 84 QSYASH-FDLRKHIKFNRKVVGIEFEGLSGEDEKSWSFWNGNGQPFGSRGKWTVAVEDAKNHSTEVHQVDFVILCVGRF 161 (522)
Q Consensus 84 ~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~d~lvvAtG~~ 161 (522)
++.+.+ -++ .+.+|+.++++--+. ...-.+.+++..+|++..+..+-|+.|.|+.
T Consensus 199 q~ra~~npnI--~v~~nt~~~ea~gd~---------------------~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~ 254 (322)
T KOG0404|consen 199 QQRAEKNPNI--EVLYNTVAVEALGDG---------------------KLLNGLRIKNVKTGEETDLPVSGLFFAIGHS 254 (322)
T ss_pred HHHHhcCCCe--EEEechhhhhhccCc---------------------ccccceEEEecccCcccccccceeEEEecCC
Confidence 333332 344 677787766654332 1112366777777888899999999999964
No 494
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.87 E-value=0.15 Score=51.38 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCC
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARS 36 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~ 36 (522)
..+|+|||+|..|+.++..|...|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999863
No 495
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=92.84 E-value=0.12 Score=54.33 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhc-CCceEEEecCCCc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLK-GFHPIVFEARSDI 38 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~-g~~v~i~e~~~~~ 38 (522)
.+|.+|||||.||..+|.+|.+. ..+|+++|+....
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 47999999999999999999995 6799999998765
No 496
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.78 E-value=0.16 Score=43.84 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHHhcCCceEEEecC
Q 009917 6 IAIVGAGVSGLLACKYLLLKGFHPIVFEAR 35 (522)
Q Consensus 6 vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~ 35 (522)
|+|||+|.-|...|..|.+.|.+|+++.++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 789999999999999999999999999985
No 497
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=92.68 E-value=0.34 Score=45.38 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=28.8
Q ss_pred EEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 205 RVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 205 ~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
.|+|||+|..|+-+|..|+..+. +||++.++..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGR---EVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCc---EEEEEEcCCC
Confidence 59999999999999999998775 4999998743
No 498
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.67 E-value=0.088 Score=45.55 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=27.2
Q ss_pred EEEEcCCCCHHHHHHHHhhhcCCCCceEEEEccc
Q 009917 206 VTVVGLQKSALDIAMECTTANGLENPCTVLYRTE 239 (522)
Q Consensus 206 VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~ 239 (522)
|+|+|+|..|.=+|..|++.+. +|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~---~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH---DVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC---EEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCC---ceEEEEccc
Confidence 7899999999999999998554 499999865
No 499
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.66 E-value=0.11 Score=52.75 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHhhhcCCCCceEEEEcccc
Q 009917 204 KRVTVVGLQKSALDIAMECTTANGLENPCTVLYRTEH 240 (522)
Q Consensus 204 k~VvVIG~G~sg~dia~~l~~~~~~~~~Vt~v~r~~~ 240 (522)
++|+|||||..|+++|..|++.+. +|+++.++|.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence 579999999999999999999765 4999998765
No 500
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=0.13 Score=50.68 Aligned_cols=42 Identities=14% Similarity=0.374 Sum_probs=40.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhcCCceEEEecCCCccccccc
Q 009917 3 KKQIAIVGAGVSGLLACKYLLLKGFHPIVFEARSDIGGAWIK 44 (522)
Q Consensus 3 ~~~vvIIGaG~aGl~~a~~l~~~g~~v~i~e~~~~~Gg~w~~ 44 (522)
.+||||||.|..--..|....+.|.+|+=+|+++..||.|..
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waS 49 (547)
T KOG4405|consen 8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWAS 49 (547)
T ss_pred hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccc
Confidence 489999999999999999999999999999999999999997
Done!