Query 009920
Match_columns 522
No_of_seqs 387 out of 2594
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 18:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.4E-34 1.2E-38 296.0 27.7 168 3-186 105-277 (346)
2 KOG4205 RNA-binding protein mu 100.0 7.3E-31 1.6E-35 266.2 21.8 236 3-248 4-243 (311)
3 TIGR01645 half-pint poly-U bin 100.0 2.4E-29 5.2E-34 274.8 22.9 180 3-187 105-287 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.9E-29 1.5E-33 258.1 22.2 166 4-185 2-172 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 8.4E-29 1.8E-33 266.7 23.0 177 3-183 87-265 (457)
6 KOG0117 Heterogeneous nuclear 100.0 4E-28 8.7E-33 248.2 25.6 178 4-189 82-336 (506)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-28 6.3E-33 253.5 24.5 183 4-186 88-351 (352)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-27 2.5E-32 261.1 27.9 175 4-187 57-310 (578)
9 KOG0144 RNA-binding protein CU 100.0 1E-28 2.2E-33 251.5 12.6 174 2-191 31-213 (510)
10 KOG0148 Apoptosis-promoting RN 100.0 9E-28 2E-32 232.4 17.5 176 5-186 62-240 (321)
11 TIGR01628 PABP-1234 polyadenyl 99.9 1.9E-26 4.2E-31 254.9 20.5 166 7-187 2-170 (562)
12 TIGR01628 PABP-1234 polyadenyl 99.9 2.1E-26 4.6E-31 254.5 19.8 182 4-187 177-367 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.6E-25 9.9E-30 240.7 22.4 178 2-185 172-376 (509)
14 KOG0145 RNA-binding protein EL 99.9 4.7E-25 1E-29 212.3 14.5 169 2-186 38-211 (360)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.8E-24 6E-29 233.6 22.1 175 3-184 273-480 (481)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4E-24 8.8E-29 232.3 21.7 167 5-185 2-175 (481)
17 KOG0127 Nucleolar protein fibr 99.9 1.5E-24 3.1E-29 226.4 16.9 181 5-186 117-380 (678)
18 KOG0127 Nucleolar protein fibr 99.9 1.8E-24 4E-29 225.6 16.7 186 1-187 1-199 (678)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-23 2.7E-28 229.4 21.8 181 4-184 294-502 (509)
20 KOG0131 Splicing factor 3b, su 99.9 2.6E-24 5.6E-29 198.1 12.9 168 4-186 8-179 (203)
21 KOG0109 RNA-binding protein LA 99.9 6.7E-24 1.4E-28 207.4 11.0 147 6-186 3-152 (346)
22 TIGR01622 SF-CC1 splicing fact 99.9 1.4E-21 3.1E-26 210.5 21.9 176 5-184 186-448 (457)
23 KOG4211 Splicing factor hnRNP- 99.9 9.7E-20 2.1E-24 189.3 32.9 174 4-186 9-184 (510)
24 KOG0145 RNA-binding protein EL 99.9 4.9E-21 1.1E-25 184.7 15.4 180 5-184 127-358 (360)
25 KOG0124 Polypyrimidine tract-b 99.8 2E-21 4.3E-26 194.6 8.8 176 5-186 113-292 (544)
26 KOG0123 Polyadenylate-binding 99.8 2E-20 4.4E-25 195.8 16.9 156 6-191 2-160 (369)
27 KOG0146 RNA-binding protein ET 99.8 5.2E-21 1.1E-25 185.1 10.2 184 4-188 18-369 (371)
28 KOG0147 Transcriptional coacti 99.8 1.5E-21 3.2E-26 205.1 6.9 183 2-186 176-360 (549)
29 KOG0110 RNA-binding protein (R 99.8 2.3E-20 4.9E-25 200.8 12.9 174 5-185 515-694 (725)
30 KOG0144 RNA-binding protein CU 99.8 6.3E-20 1.4E-24 187.6 10.0 182 4-186 123-506 (510)
31 KOG0123 Polyadenylate-binding 99.8 1.1E-18 2.4E-23 182.8 15.1 171 3-185 74-247 (369)
32 KOG0148 Apoptosis-promoting RN 99.8 4.8E-19 1E-23 172.1 10.7 140 2-185 3-143 (321)
33 KOG0105 Alternative splicing f 99.8 2.5E-17 5.5E-22 152.2 18.1 156 3-168 4-171 (241)
34 PLN03134 glycine-rich RNA-bind 99.7 3.4E-17 7.4E-22 150.3 16.4 84 103-186 32-116 (144)
35 TIGR01645 half-pint poly-U bin 99.7 1E-16 2.2E-21 176.0 21.4 79 4-82 203-283 (612)
36 KOG4212 RNA-binding protein hn 99.7 4.2E-16 9.2E-21 159.6 18.0 177 3-182 42-292 (608)
37 PLN03134 glycine-rich RNA-bind 99.7 9E-17 1.9E-21 147.6 11.4 83 3-85 32-116 (144)
38 KOG0106 Alternative splicing f 99.6 2.4E-16 5.2E-21 151.8 8.3 161 6-182 2-169 (216)
39 KOG4206 Spliceosomal protein s 99.6 6.8E-15 1.5E-19 140.8 16.4 170 5-182 9-220 (221)
40 KOG0147 Transcriptional coacti 99.6 3.7E-15 8E-20 157.3 13.0 172 6-182 279-526 (549)
41 KOG4211 Splicing factor hnRNP- 99.6 4E-14 8.7E-19 147.8 19.1 176 4-182 102-356 (510)
42 COG0724 RNA-binding proteins ( 99.6 1E-14 2.2E-19 142.3 13.6 159 5-163 115-283 (306)
43 KOG0149 Predicted RNA-binding 99.6 2E-15 4.4E-20 144.8 7.6 79 4-82 11-90 (247)
44 KOG0110 RNA-binding protein (R 99.6 2.2E-14 4.8E-19 155.1 14.1 175 2-182 382-596 (725)
45 KOG1365 RNA-binding protein Fu 99.6 4.8E-15 1.1E-19 149.9 7.2 181 4-186 160-364 (508)
46 KOG0113 U1 small nuclear ribon 99.6 2.5E-14 5.3E-19 141.2 11.7 100 101-200 97-197 (335)
47 KOG0149 Predicted RNA-binding 99.5 8.1E-15 1.8E-19 140.7 7.5 81 103-183 10-90 (247)
48 TIGR01659 sex-lethal sex-letha 99.5 2.6E-14 5.7E-19 149.0 11.5 85 101-185 103-188 (346)
49 TIGR01648 hnRNP-R-Q heterogene 99.5 3.1E-14 6.6E-19 156.3 11.5 120 5-132 233-368 (578)
50 PF00076 RRM_1: RNA recognitio 99.5 6.5E-14 1.4E-18 110.8 9.0 68 8-76 1-70 (70)
51 KOG0129 Predicted RNA-binding 99.5 2.2E-13 4.7E-18 143.2 14.9 178 3-182 257-452 (520)
52 KOG1548 Transcription elongati 99.5 5.7E-13 1.2E-17 133.9 17.1 177 4-185 133-353 (382)
53 PF00076 RRM_1: RNA recognitio 99.5 2.5E-13 5.4E-18 107.4 9.2 69 108-177 1-70 (70)
54 KOG0122 Translation initiation 99.5 1.6E-13 3.4E-18 132.3 9.4 81 3-83 187-269 (270)
55 PF14259 RRM_6: RNA recognitio 99.5 2.8E-13 6.1E-18 108.1 8.7 68 8-76 1-70 (70)
56 KOG0125 Ataxin 2-binding prote 99.4 5.4E-13 1.2E-17 133.2 10.4 87 100-188 91-178 (376)
57 PLN03120 nucleic acid binding 99.4 6.6E-13 1.4E-17 131.3 11.0 78 3-83 2-80 (260)
58 KOG0122 Translation initiation 99.4 6.2E-13 1.3E-17 128.3 10.0 83 102-184 186-269 (270)
59 KOG1190 Polypyrimidine tract-b 99.4 5.5E-12 1.2E-16 129.0 16.8 170 5-183 297-490 (492)
60 PLN03121 nucleic acid binding 99.4 2.3E-12 5E-17 125.7 12.6 80 1-83 1-81 (243)
61 KOG0124 Polypyrimidine tract-b 99.4 5E-12 1.1E-16 127.6 15.1 179 4-182 209-533 (544)
62 PF14259 RRM_6: RNA recognitio 99.4 1.2E-12 2.6E-17 104.4 8.6 69 108-177 1-70 (70)
63 KOG0107 Alternative splicing f 99.4 6.6E-13 1.4E-17 122.4 8.0 76 5-85 10-87 (195)
64 KOG0121 Nuclear cap-binding pr 99.4 9.2E-13 2E-17 115.6 6.9 82 3-84 34-117 (153)
65 KOG1457 RNA binding protein (c 99.4 9E-12 2E-16 118.7 14.1 160 5-168 34-269 (284)
66 PLN03120 nucleic acid binding 99.4 3.9E-12 8.3E-17 125.9 11.4 78 105-185 4-81 (260)
67 KOG0120 Splicing factor U2AF, 99.3 4.9E-12 1.1E-16 135.2 12.2 180 4-183 288-491 (500)
68 smart00362 RRM_2 RNA recogniti 99.3 5.7E-12 1.2E-16 98.4 9.0 70 7-78 1-72 (72)
69 KOG4207 Predicted splicing fac 99.3 1.6E-12 3.4E-17 122.6 6.8 83 100-182 8-91 (256)
70 KOG0121 Nuclear cap-binding pr 99.3 3E-12 6.4E-17 112.5 7.8 83 103-185 34-117 (153)
71 KOG0113 U1 small nuclear ribon 99.3 4.9E-12 1.1E-16 125.1 9.2 81 3-83 99-181 (335)
72 PLN03213 repressor of silencin 99.3 1.8E-12 3.9E-17 134.9 6.4 76 4-83 9-88 (759)
73 KOG0117 Heterogeneous nuclear 99.3 1.5E-11 3.2E-16 127.2 12.9 119 55-182 42-162 (506)
74 COG0724 RNA-binding proteins ( 99.3 1E-11 2.3E-16 121.0 10.8 79 105-183 115-194 (306)
75 KOG0111 Cyclophilin-type pepti 99.3 2.3E-12 5.1E-17 122.4 5.8 87 103-189 8-95 (298)
76 smart00360 RRM RNA recognition 99.3 1E-11 2.2E-16 96.5 8.4 69 10-78 1-71 (71)
77 KOG4207 Predicted splicing fac 99.3 3.1E-12 6.8E-17 120.6 6.1 78 4-81 12-91 (256)
78 smart00362 RRM_2 RNA recogniti 99.3 1.9E-11 4.1E-16 95.4 9.2 71 107-179 1-72 (72)
79 KOG0125 Ataxin 2-binding prote 99.3 6.5E-12 1.4E-16 125.6 8.1 82 4-87 95-178 (376)
80 KOG0108 mRNA cleavage and poly 99.3 3.2E-12 7E-17 135.7 6.1 80 6-85 19-100 (435)
81 KOG4212 RNA-binding protein hn 99.3 8.5E-11 1.8E-15 121.2 16.0 71 106-181 537-608 (608)
82 smart00360 RRM RNA recognition 99.3 1.9E-11 4.1E-16 94.9 8.8 70 110-179 1-71 (71)
83 KOG0107 Alternative splicing f 99.3 1.1E-11 2.4E-16 114.4 8.1 77 104-185 9-86 (195)
84 KOG0120 Splicing factor U2AF, 99.3 1.7E-11 3.6E-16 131.1 10.4 181 2-188 172-373 (500)
85 KOG1190 Polypyrimidine tract-b 99.3 1.6E-11 3.5E-16 125.7 9.3 171 2-182 25-226 (492)
86 PLN03213 repressor of silencin 99.2 2.8E-11 6.1E-16 126.2 9.9 78 103-184 8-88 (759)
87 KOG1365 RNA-binding protein Fu 99.2 2.8E-11 6.1E-16 122.9 9.7 179 3-182 58-241 (508)
88 cd00590 RRM RRM (RNA recogniti 99.2 6E-11 1.3E-15 93.0 9.7 72 7-79 1-74 (74)
89 KOG0131 Splicing factor 3b, su 99.2 2E-11 4.3E-16 113.3 7.2 80 103-182 7-87 (203)
90 KOG0105 Alternative splicing f 99.2 6E-11 1.3E-15 110.3 9.6 76 104-182 5-81 (241)
91 KOG0126 Predicted RNA-binding 99.2 3.3E-12 7.1E-17 118.4 1.0 79 3-81 33-113 (219)
92 PLN03121 nucleic acid binding 99.2 1E-10 2.2E-15 114.3 11.1 79 104-185 4-82 (243)
93 cd00590 RRM RRM (RNA recogniti 99.2 1.3E-10 2.9E-15 91.0 9.9 73 107-180 1-74 (74)
94 KOG0111 Cyclophilin-type pepti 99.2 1.7E-11 3.7E-16 116.6 5.0 86 1-86 6-93 (298)
95 KOG1456 Heterogeneous nuclear 99.2 3.1E-09 6.7E-14 108.0 20.1 163 4-186 30-201 (494)
96 KOG1456 Heterogeneous nuclear 99.1 1.9E-09 4.2E-14 109.5 17.3 175 4-185 286-492 (494)
97 KOG0130 RNA-binding protein RB 99.1 1.1E-10 2.4E-15 103.4 7.4 84 103-186 70-154 (170)
98 KOG0114 Predicted RNA-binding 99.1 1.4E-10 3.1E-15 98.5 7.5 81 4-87 17-99 (124)
99 KOG0130 RNA-binding protein RB 99.1 8.1E-11 1.8E-15 104.3 6.2 79 6-84 73-153 (170)
100 KOG0114 Predicted RNA-binding 99.1 3.2E-10 6.9E-15 96.4 9.3 81 102-185 15-96 (124)
101 KOG4210 Nuclear localization s 99.1 7.9E-11 1.7E-15 119.7 6.9 178 4-187 87-267 (285)
102 KOG4205 RNA-binding protein mu 99.1 5.8E-11 1.3E-15 121.3 5.7 89 104-192 5-93 (311)
103 KOG0108 mRNA cleavage and poly 99.1 2.5E-10 5.4E-15 121.5 8.2 81 106-186 19-100 (435)
104 KOG0116 RasGAP SH3 binding pro 99.1 1.3E-09 2.9E-14 115.3 13.3 81 106-186 289-369 (419)
105 KOG0126 Predicted RNA-binding 99.1 2.9E-11 6.3E-16 112.1 0.7 79 104-182 34-113 (219)
106 KOG0128 RNA-binding protein SA 99.0 1.4E-11 3.1E-16 135.8 -3.5 152 3-187 665-818 (881)
107 smart00361 RRM_1 RNA recogniti 99.0 1.2E-09 2.6E-14 87.8 8.1 61 119-179 2-70 (70)
108 smart00361 RRM_1 RNA recogniti 99.0 1.3E-09 2.9E-14 87.6 7.8 60 18-77 1-69 (70)
109 KOG0109 RNA-binding protein LA 99.0 8.2E-10 1.8E-14 109.2 6.7 72 106-185 3-75 (346)
110 KOG0415 Predicted peptidyl pro 99.0 8.7E-10 1.9E-14 111.3 6.9 85 102-186 236-321 (479)
111 PF13893 RRM_5: RNA recognitio 98.9 2.8E-09 6.1E-14 81.6 7.3 55 122-181 1-56 (56)
112 KOG0146 RNA-binding protein ET 98.9 9.5E-10 2.1E-14 107.4 5.3 84 3-86 283-368 (371)
113 KOG0132 RNA polymerase II C-te 98.9 2.2E-09 4.7E-14 117.6 7.9 107 5-128 421-529 (894)
114 PF13893 RRM_5: RNA recognitio 98.9 4.9E-09 1.1E-13 80.2 7.5 54 22-80 1-56 (56)
115 KOG0415 Predicted peptidyl pro 98.9 1.8E-09 3.8E-14 109.1 6.4 81 2-82 236-318 (479)
116 KOG4454 RNA binding protein (R 98.9 3.2E-10 6.9E-15 108.0 0.2 134 3-168 7-146 (267)
117 KOG0132 RNA polymerase II C-te 98.8 1.3E-08 2.9E-13 111.5 9.1 78 103-186 419-497 (894)
118 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.5E-08 3.2E-13 107.6 7.7 78 5-82 405-484 (940)
119 KOG0226 RNA-binding proteins [ 98.8 5.5E-09 1.2E-13 101.7 3.9 166 8-184 99-270 (290)
120 KOG0153 Predicted RNA-binding 98.7 3.2E-08 6.9E-13 100.2 9.4 81 99-185 222-304 (377)
121 KOG0153 Predicted RNA-binding 98.7 4E-08 8.7E-13 99.5 9.3 75 2-82 225-302 (377)
122 KOG0112 Large RNA-binding prot 98.7 1.2E-08 2.6E-13 113.5 4.5 159 3-186 370-533 (975)
123 KOG4307 RNA binding protein RB 98.6 6.1E-08 1.3E-12 105.2 8.4 179 3-182 309-512 (944)
124 KOG4208 Nucleolar RNA-binding 98.6 1.6E-07 3.5E-12 89.2 10.2 80 4-83 48-130 (214)
125 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.2E-07 2.7E-12 100.7 8.0 79 105-183 405-484 (940)
126 KOG0116 RasGAP SH3 binding pro 98.6 1.1E-07 2.4E-12 100.9 7.5 79 4-82 287-366 (419)
127 KOG4206 Spliceosomal protein s 98.6 1.8E-07 4E-12 90.1 8.1 80 104-186 8-92 (221)
128 KOG4660 Protein Mei2, essentia 98.5 7.5E-08 1.6E-12 102.8 5.1 169 3-183 73-249 (549)
129 KOG4208 Nucleolar RNA-binding 98.5 2.9E-07 6.3E-12 87.6 8.2 84 101-184 45-130 (214)
130 KOG0533 RRM motif-containing p 98.5 3.5E-07 7.6E-12 90.5 9.1 84 103-187 81-165 (243)
131 KOG0533 RRM motif-containing p 98.5 6E-07 1.3E-11 88.9 8.9 83 2-85 80-164 (243)
132 KOG4209 Splicing factor RNPS1, 98.4 3.7E-07 8E-12 90.2 6.6 84 101-184 97-180 (231)
133 KOG4307 RNA binding protein RB 98.4 2E-06 4.4E-11 93.6 12.5 76 5-81 434-512 (944)
134 KOG1548 Transcription elongati 98.3 1.5E-06 3.2E-11 88.3 8.5 81 101-182 130-219 (382)
135 KOG4454 RNA binding protein (R 98.3 2.7E-07 5.8E-12 88.4 3.0 78 103-182 7-85 (267)
136 PF04059 RRM_2: RNA recognitio 98.3 3.2E-06 6.8E-11 72.4 9.0 77 6-82 2-86 (97)
137 KOG4209 Splicing factor RNPS1, 98.3 7.6E-07 1.6E-11 88.0 5.6 82 2-83 98-180 (231)
138 KOG1995 Conserved Zn-finger pr 98.3 2.3E-06 5E-11 87.5 8.0 84 102-185 63-155 (351)
139 KOG4676 Splicing factor, argin 98.2 8.1E-07 1.8E-11 91.2 4.3 165 4-172 6-214 (479)
140 KOG0106 Alternative splicing f 98.2 1.2E-06 2.7E-11 85.0 5.2 74 106-187 2-76 (216)
141 KOG0226 RNA-binding proteins [ 98.2 7.7E-07 1.7E-11 87.0 3.7 81 3-83 188-270 (290)
142 KOG2193 IGF-II mRNA-binding pr 98.2 1.4E-07 3E-12 97.5 -2.0 148 6-182 2-155 (584)
143 KOG4660 Protein Mei2, essentia 98.1 4.1E-06 8.8E-11 89.8 5.9 71 102-177 72-143 (549)
144 KOG0128 RNA-binding protein SA 98.1 2.6E-07 5.6E-12 102.7 -3.3 165 5-175 571-737 (881)
145 PF04059 RRM_2: RNA recognitio 98.1 2.5E-05 5.5E-10 66.9 9.1 78 106-183 2-86 (97)
146 KOG1457 RNA binding protein (c 97.9 0.0001 2.2E-09 71.1 11.0 87 101-187 30-121 (284)
147 KOG0151 Predicted splicing reg 97.8 3.5E-05 7.5E-10 84.6 7.1 81 3-83 172-257 (877)
148 PF08777 RRM_3: RNA binding mo 97.7 0.00011 2.4E-09 64.0 6.6 53 6-64 2-54 (105)
149 KOG0151 Predicted splicing reg 97.6 7.1E-05 1.5E-09 82.2 6.3 83 103-185 172-258 (877)
150 KOG1855 Predicted RNA-binding 97.6 5.4E-05 1.2E-09 79.0 4.3 68 102-169 228-308 (484)
151 PF08777 RRM_3: RNA binding mo 97.6 9.4E-05 2E-09 64.4 5.1 69 106-180 2-76 (105)
152 PF11608 Limkain-b1: Limkain b 97.5 0.00032 7E-09 58.1 7.2 67 6-82 3-76 (90)
153 KOG1995 Conserved Zn-finger pr 97.5 7.5E-05 1.6E-09 76.6 4.3 83 3-85 64-156 (351)
154 KOG4210 Nuclear localization s 97.3 0.00012 2.7E-09 74.7 3.2 80 6-85 185-266 (285)
155 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00071 1.5E-08 51.5 5.3 52 6-64 2-53 (53)
156 KOG4849 mRNA cleavage factor I 97.2 0.00032 7E-09 71.5 3.7 77 104-180 79-158 (498)
157 KOG4849 mRNA cleavage factor I 97.1 0.00026 5.6E-09 72.2 2.7 73 7-79 82-158 (498)
158 PF11608 Limkain-b1: Limkain b 97.1 0.0017 3.6E-08 53.9 6.7 67 106-182 3-75 (90)
159 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0012 2.6E-08 50.3 5.1 52 106-164 2-53 (53)
160 KOG0921 Dosage compensation co 97.0 0.0056 1.2E-07 69.7 11.5 18 237-254 1180-1197(1282)
161 KOG3152 TBP-binding protein, a 96.9 0.00055 1.2E-08 67.4 2.9 71 4-74 73-157 (278)
162 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0025 5.4E-08 55.0 6.6 79 3-82 4-91 (100)
163 COG5175 MOT2 Transcriptional r 96.8 0.0021 4.6E-08 65.5 6.2 82 103-184 112-203 (480)
164 KOG0921 Dosage compensation co 96.8 0.022 4.8E-07 65.1 14.5 12 45-56 900-911 (1282)
165 KOG1855 Predicted RNA-binding 96.6 0.0018 4E-08 67.8 4.1 62 3-64 229-303 (484)
166 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0068 1.5E-07 52.3 6.7 79 104-183 5-91 (100)
167 KOG0129 Predicted RNA-binding 96.4 0.0082 1.8E-07 64.5 7.6 61 4-64 369-430 (520)
168 COG5175 MOT2 Transcriptional r 96.3 0.0076 1.7E-07 61.5 6.3 77 7-83 116-203 (480)
169 KOG0115 RNA-binding protein p5 96.3 0.009 1.9E-07 59.1 6.5 97 65-185 14-115 (275)
170 KOG2314 Translation initiation 96.3 0.0024 5.1E-08 69.0 2.6 75 5-80 58-141 (698)
171 PF10309 DUF2414: Protein of u 96.1 0.028 6E-07 44.2 7.3 56 104-167 4-62 (62)
172 PF08952 DUF1866: Domain of un 96.1 0.024 5.1E-07 52.1 7.7 56 121-184 52-107 (146)
173 KOG2591 c-Mpl binding protein, 95.9 0.015 3.4E-07 62.8 6.4 71 103-180 173-248 (684)
174 PF10567 Nab6_mRNP_bdg: RNA-re 95.8 0.17 3.8E-06 51.2 13.0 164 4-168 14-212 (309)
175 KOG3152 TBP-binding protein, a 95.7 0.0093 2E-07 59.0 3.6 72 104-175 73-157 (278)
176 KOG2135 Proteins containing th 95.6 0.011 2.3E-07 63.0 4.0 72 107-184 374-446 (526)
177 KOG1996 mRNA splicing factor [ 95.6 0.026 5.6E-07 56.8 6.5 63 19-81 300-365 (378)
178 KOG2314 Translation initiation 95.6 0.049 1.1E-06 59.2 8.9 77 103-180 56-140 (698)
179 PF08675 RNA_bind: RNA binding 95.5 0.043 9.3E-07 45.6 6.3 57 103-168 7-63 (87)
180 KOG1996 mRNA splicing factor [ 95.5 0.036 7.8E-07 55.8 6.9 64 119-182 300-365 (378)
181 KOG2202 U2 snRNP splicing fact 95.4 0.0085 1.8E-07 59.3 2.0 60 20-80 83-145 (260)
182 PF08952 DUF1866: Domain of un 95.3 0.047 1E-06 50.1 6.6 55 21-83 52-107 (146)
183 KOG4676 Splicing factor, argin 95.3 0.024 5.2E-07 59.1 5.0 78 105-182 7-87 (479)
184 KOG2202 U2 snRNP splicing fact 95.2 0.0092 2E-07 59.1 1.8 62 120-182 83-146 (260)
185 KOG2135 Proteins containing th 95.2 0.012 2.7E-07 62.6 2.7 80 1-86 368-449 (526)
186 KOG2591 c-Mpl binding protein, 95.0 0.037 8E-07 60.0 5.6 69 4-79 174-248 (684)
187 PF10309 DUF2414: Protein of u 94.7 0.14 3E-06 40.4 6.6 50 6-64 6-59 (62)
188 PF15023 DUF4523: Protein of u 94.6 0.19 4.1E-06 45.9 8.4 75 101-182 82-160 (166)
189 PF07292 NID: Nmi/IFP 35 domai 94.3 0.04 8.7E-07 46.4 3.2 71 50-127 1-74 (88)
190 KOG2193 IGF-II mRNA-binding pr 94.3 0.036 7.8E-07 58.3 3.4 76 106-187 2-79 (584)
191 PF08675 RNA_bind: RNA binding 94.2 0.16 3.5E-06 42.3 6.4 51 5-64 9-59 (87)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 94.0 0.068 1.5E-06 50.9 4.4 68 3-70 5-80 (176)
193 KOG0115 RNA-binding protein p5 93.4 0.066 1.4E-06 53.2 3.3 74 6-80 32-111 (275)
194 KOG2416 Acinus (induces apopto 93.2 0.12 2.6E-06 56.6 5.1 78 101-184 440-522 (718)
195 KOG0112 Large RNA-binding prot 92.0 0.26 5.7E-06 56.4 5.9 75 4-84 454-532 (975)
196 KOG4285 Mitotic phosphoprotein 91.7 0.59 1.3E-05 47.6 7.5 73 6-85 198-272 (350)
197 KOG2318 Uncharacterized conser 91.4 0.78 1.7E-05 50.4 8.5 121 2-175 171-297 (650)
198 PF15023 DUF4523: Protein of u 91.3 0.92 2E-05 41.6 7.5 74 2-82 83-161 (166)
199 KOG4285 Mitotic phosphoprotein 90.3 1.6 3.6E-05 44.5 9.0 73 108-187 200-273 (350)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 90.2 0.21 4.5E-06 47.6 2.7 79 104-182 6-96 (176)
201 KOG2253 U1 snRNP complex, subu 90.2 0.17 3.8E-06 56.1 2.3 117 4-129 39-159 (668)
202 PF07576 BRAP2: BRCA1-associat 89.9 4.1 8.9E-05 35.8 10.3 63 104-168 12-75 (110)
203 PF11767 SET_assoc: Histone ly 89.0 1.4 3.1E-05 35.1 6.1 53 16-77 11-65 (66)
204 KOG0804 Cytoplasmic Zn-finger 88.9 1.2 2.6E-05 47.7 7.2 66 4-71 73-141 (493)
205 KOG2416 Acinus (induces apopto 88.1 0.39 8.4E-06 52.8 3.1 72 3-80 442-519 (718)
206 KOG2068 MOT2 transcription fac 87.7 0.26 5.6E-06 50.9 1.4 80 6-85 78-165 (327)
207 KOG2068 MOT2 transcription fac 87.3 0.18 4E-06 51.9 0.1 84 103-186 75-165 (327)
208 PF07576 BRAP2: BRCA1-associat 87.3 3.8 8.3E-05 36.0 8.3 64 6-71 13-80 (110)
209 KOG3973 Uncharacterized conser 87.2 6 0.00013 41.2 10.8 12 117-128 198-209 (465)
210 PF04847 Calcipressin: Calcipr 86.6 2.1 4.5E-05 41.1 6.9 61 118-184 8-71 (184)
211 PF03880 DbpA: DbpA RNA bindin 85.5 3.9 8.4E-05 33.0 7.0 55 17-80 13-74 (74)
212 PF14111 DUF4283: Domain of un 84.5 0.94 2E-05 41.2 3.3 110 16-140 28-140 (153)
213 smart00596 PRE_C2HC PRE_C2HC d 83.6 1.7 3.6E-05 35.0 3.8 64 20-84 2-66 (69)
214 KOG2253 U1 snRNP complex, subu 82.9 0.91 2E-05 50.7 2.9 70 103-181 38-108 (668)
215 COG5594 Uncharacterized integr 82.5 0.18 3.9E-06 57.5 -2.7 28 3-30 206-234 (827)
216 PF07530 PRE_C2HC: Associated 82.5 2.2 4.9E-05 34.1 4.3 64 20-84 2-66 (68)
217 PF04847 Calcipressin: Calcipr 81.9 3.3 7E-05 39.8 5.9 61 17-83 7-71 (184)
218 KOG4410 5-formyltetrahydrofola 81.9 9.9 0.00021 38.7 9.4 55 106-166 331-393 (396)
219 KOG4574 RNA-binding protein (c 80.8 1.3 2.9E-05 50.6 3.3 77 107-189 300-379 (1007)
220 PF03880 DbpA: DbpA RNA bindin 79.7 5.4 0.00012 32.2 5.7 58 115-181 11-74 (74)
221 KOG0804 Cytoplasmic Zn-finger 77.4 8.1 0.00017 41.6 7.6 65 105-171 74-140 (493)
222 KOG3973 Uncharacterized conser 71.8 38 0.00082 35.5 10.5 6 121-126 244-249 (465)
223 PRK11634 ATP-dependent RNA hel 71.4 29 0.00063 39.6 10.8 70 106-184 487-563 (629)
224 KOG4574 RNA-binding protein (c 69.2 3.4 7.5E-05 47.5 2.7 72 6-83 299-374 (1007)
225 TIGR02542 B_forsyth_147 Bacter 67.2 19 0.00041 32.0 6.2 114 13-157 11-129 (145)
226 KOG4483 Uncharacterized conser 65.2 30 0.00065 36.9 8.3 67 103-176 389-456 (528)
227 PF03468 XS: XS domain; Inter 64.3 11 0.00023 33.5 4.4 46 118-166 30-76 (116)
228 PF11767 SET_assoc: Histone ly 63.9 31 0.00067 27.5 6.4 55 115-178 10-65 (66)
229 PF03778 DUF321: Protein of un 63.5 3.2 6.9E-05 25.2 0.6 13 500-512 2-14 (20)
230 KOG4483 Uncharacterized conser 63.4 13 0.00028 39.5 5.3 53 5-64 391-444 (528)
231 KOG4213 RNA-binding protein La 62.3 4.2 9E-05 38.7 1.4 60 105-169 111-172 (205)
232 PF07530 PRE_C2HC: Associated 61.3 22 0.00047 28.5 5.2 62 120-184 2-65 (68)
233 PF03468 XS: XS domain; Inter 58.0 11 0.00024 33.5 3.3 55 7-64 10-74 (116)
234 smart00596 PRE_C2HC PRE_C2HC d 57.3 25 0.00054 28.3 4.8 61 120-183 2-64 (69)
235 PF02714 DUF221: Domain of unk 57.0 16 0.00034 37.7 4.8 57 50-128 1-57 (325)
236 KOG4213 RNA-binding protein La 56.8 9.4 0.0002 36.4 2.7 56 5-64 111-167 (205)
237 KOG2891 Surface glycoprotein [ 56.3 34 0.00074 34.7 6.7 38 102-139 146-195 (445)
238 COG5638 Uncharacterized conser 52.9 47 0.001 35.5 7.3 37 4-40 145-186 (622)
239 PF10567 Nab6_mRNP_bdg: RNA-re 52.0 33 0.00071 35.2 5.9 80 103-182 13-106 (309)
240 PF15013 CCSMST1: CCSMST1 fami 51.2 6.1 0.00013 32.5 0.5 17 478-494 41-57 (77)
241 KOG3262 H/ACA small nucleolar 47.6 67 0.0015 30.8 6.8 22 118-139 87-108 (215)
242 PF14026 DUF4242: Protein of u 45.7 1.7E+02 0.0036 23.9 8.6 59 108-168 3-68 (77)
243 PF02714 DUF221: Domain of unk 40.9 29 0.00062 35.8 3.7 37 150-187 1-37 (325)
244 KOG4019 Calcineurin-mediated s 40.2 26 0.00055 33.6 2.8 74 106-185 11-91 (193)
245 PF07292 NID: Nmi/IFP 35 domai 40.0 36 0.00078 28.8 3.5 31 150-180 1-33 (88)
246 PRK14548 50S ribosomal protein 39.2 1.1E+02 0.0025 25.5 6.3 56 109-167 24-81 (84)
247 PF08002 DUF1697: Protein of u 37.7 88 0.0019 28.4 5.9 123 6-138 4-132 (137)
248 PF15513 DUF4651: Domain of un 37.6 62 0.0013 25.6 4.1 19 19-37 8-26 (62)
249 COG5193 LHP1 La protein, small 37.6 14 0.0003 39.4 0.7 60 5-64 174-243 (438)
250 KOG2891 Surface glycoprotein [ 37.4 22 0.00048 36.1 2.1 33 6-38 150-194 (445)
251 TIGR03636 L23_arch archaeal ri 36.9 1.4E+02 0.0031 24.5 6.4 57 108-167 16-74 (77)
252 TIGR02515 IV_pilus_PilQ type I 36.9 38 0.00082 36.6 4.0 63 16-81 7-75 (418)
253 PF14893 PNMA: PNMA 33.7 36 0.00078 35.8 3.1 25 4-28 17-41 (331)
254 KOG4365 Uncharacterized conser 33.5 9.7 0.00021 40.9 -1.1 75 5-80 3-79 (572)
255 PF00403 HMA: Heavy-metal-asso 33.4 2E+02 0.0042 21.6 6.5 56 107-168 1-60 (62)
256 PRK14548 50S ribosomal protein 32.4 1.2E+02 0.0026 25.3 5.4 54 8-64 23-78 (84)
257 KOG4019 Calcineurin-mediated s 31.7 39 0.00085 32.4 2.6 72 6-83 11-90 (193)
258 PF08734 GYD: GYD domain; Int 30.9 1.9E+02 0.004 24.3 6.4 42 19-64 22-64 (91)
259 KOG4008 rRNA processing protei 30.8 37 0.0008 33.8 2.4 33 2-34 37-69 (261)
260 cd06405 PB1_Mekk2_3 The PB1 do 29.5 3.2E+02 0.007 22.5 7.7 62 112-181 15-77 (79)
261 COG4874 Uncharacterized protei 27.3 1.4E+02 0.003 30.1 5.7 29 1-30 154-182 (318)
262 PF11411 DNA_ligase_IV: DNA li 26.1 46 0.001 23.4 1.5 16 15-30 19-34 (36)
263 cd00874 RNA_Cyclase_Class_II R 25.7 3.2E+02 0.0069 28.6 8.5 47 107-154 188-237 (326)
264 PF15513 DUF4651: Domain of un 25.5 1.5E+02 0.0032 23.5 4.4 18 120-137 9-26 (62)
265 PF14026 DUF4242: Protein of u 25.4 3.7E+02 0.0081 21.8 8.1 59 8-68 3-69 (77)
266 COG0030 KsgA Dimethyladenosine 25.3 2.9E+02 0.0062 28.1 7.8 42 7-64 97-138 (259)
267 PRK06369 nac nascent polypepti 24.5 2.4E+02 0.0051 25.1 6.1 33 115-171 73-105 (115)
268 KOG4410 5-formyltetrahydrofola 24.1 87 0.0019 32.1 3.7 47 6-57 331-377 (396)
269 PF07876 Dabb: Stress responsi 23.9 4E+02 0.0086 21.7 7.3 57 108-164 4-71 (97)
270 PTZ00191 60S ribosomal protein 23.6 5.9E+02 0.013 23.6 10.4 54 108-164 84-139 (145)
271 PF08206 OB_RNB: Ribonuclease 23.6 34 0.00074 26.2 0.6 37 146-182 7-44 (58)
272 TIGR03636 L23_arch archaeal ri 23.3 1.8E+02 0.0039 23.9 4.8 54 8-64 16-71 (77)
273 COG5353 Uncharacterized protei 23.2 2.8E+02 0.0062 25.8 6.5 59 3-61 85-156 (161)
274 PF00276 Ribosomal_L23: Riboso 22.2 69 0.0015 27.0 2.3 32 9-40 23-56 (91)
275 PRK11901 hypothetical protein; 21.8 1.6E+02 0.0035 30.8 5.2 55 116-172 253-309 (327)
276 COG5193 LHP1 La protein, small 21.7 39 0.00085 36.1 0.8 61 105-165 174-244 (438)
277 PF15468 DUF4636: Domain of un 21.4 63 0.0014 31.7 2.0 26 476-503 37-62 (243)
278 KOG2295 C2H2 Zn-finger protein 20.2 16 0.00035 40.4 -2.5 72 5-76 231-304 (648)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.4e-34 Score=296.05 Aligned_cols=168 Identities=22% Similarity=0.394 Sum_probs=153.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++|| +++++|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 46789999999999999999999999999999999999999999999999999999999999 8999999999999988
Q ss_pred CCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 009920 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 81 ~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
.+..+. ...++|||.|||+++||++|+++|++||+|++|+|++|+.++++||||||+|+++++|
T Consensus 185 ~p~~~~----------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 185 RPGGES----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred cccccc----------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 653211 2346899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CccCC--eEEEEEEcCCCCC
Q 009920 161 DRVLHKTF-HELNG--KMVEVKRAVPKEF 186 (522)
Q Consensus 161 ~~Al~~~~-~~l~G--r~I~V~~a~pk~~ 186 (522)
++||++++ ..|++ ++|+|++++.+.+
T Consensus 249 ~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 249 QEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999999 66665 7899999886543
No 2
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.97 E-value=7.3e-31 Score=266.22 Aligned_cols=236 Identities=51% Similarity=0.910 Sum_probs=195.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecC
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~ 81 (522)
.+.++|||++|+|+++||.|+++|.+||+|.+|+||+|+.++++|+|+||+|++++...++| ...|.|+++.|+++.+.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 47899999999999999999999999999999999999999999999999999999999999 77899999999999999
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009920 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
++.++....+. ..+++|||+.||.++++++|++.|++||.|.++.++.|+.+.++++|+||+|+++++++
T Consensus 84 ~r~~~~~~~~~----------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 84 SREDQTKVGRH----------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred Ccccccccccc----------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 99887755433 26889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccCCeEEEEEEcCCCCCCCCCCCCC-CCCCC-CCCCCCCCCccccccccCCCCCCCCCCCCCCC-CCCCCCC
Q 009920 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSS-MIGYN-NFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDS-RFSPLAT 238 (522)
Q Consensus 162 ~Al~~~~~~l~Gr~I~V~~a~pk~~~~~~~r~~-~gG~~-~~G~~~~~~~~~~~~~g~~~~~~GG~ggr~gg-r~g~~gG 238 (522)
+++.+..++|++++|+|+.|.||+......... ..++. .++..+...++..+.+++++.....|+.++.+ ++++...
T Consensus 154 kv~~~~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (311)
T KOG4205|consen 154 KVTLQKFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFN 233 (311)
T ss_pred eecccceeeecCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccccccccccccccccccccC
Confidence 999999999999999999999999876554211 11212 34444444555666667766655555555543 4444433
Q ss_pred CCCCCCCCCC
Q 009920 239 GRGGISPFGG 248 (522)
Q Consensus 239 GrGG~gg~gg 248 (522)
.+.++..++.
T Consensus 234 ~g~g~~~~~~ 243 (311)
T KOG4205|consen 234 GGSGYPEFGN 243 (311)
T ss_pred CCccccccCc
Confidence 4445555553
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.4e-29 Score=274.78 Aligned_cols=180 Identities=21% Similarity=0.464 Sum_probs=156.7
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
...++|||+|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++|| ++++.|++|+|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999 8999999999999865
Q ss_pred CCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 009920 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 81 ~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
.......... ..........++|||+|||+++++++|+++|++||.|++|+|++|+.++++||||||+|+++++|
T Consensus 185 ~~~p~a~~~~-----~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 185 SNMPQAQPII-----DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred cccccccccc-----ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 4321111000 00011123457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 009920 161 DRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~pk~~~ 187 (522)
++||+.++ .+|+|+.|+|.++.++...
T Consensus 260 ~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 260 SEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999 8999999999999976543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=6.9e-29 Score=258.13 Aligned_cols=166 Identities=25% Similarity=0.505 Sum_probs=151.9
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
+.++|||+|||.+++|+||+++|++||+|.+|+|++++.+++++|||||+|.++++|++|| +++..|.+++|.|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999999999999999999999999999999999 89999999999999986
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009920 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
++... ....+|||.|||..+++++|+++|++||.|+.++|+.++.++.++|||||+|++.++|+
T Consensus 82 ~~~~~----------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 82 PSSDS----------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred ccccc----------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 64321 23468999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHhcC-CccCC--eEEEEEEcCCCC
Q 009920 162 RVLHKTF-HELNG--KMVEVKRAVPKE 185 (522)
Q Consensus 162 ~Al~~~~-~~l~G--r~I~V~~a~pk~ 185 (522)
+||+.++ ..+.+ ++|.|+++..+.
T Consensus 146 ~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 146 RAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999888 66666 678999887654
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=8.4e-29 Score=266.68 Aligned_cols=177 Identities=26% Similarity=0.469 Sum_probs=155.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecC
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~ 81 (522)
++.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++|| +++..|.+++|.|+.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 56789999999999999999999999999999999999999999999999999999999999 99999999999998765
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009920 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
.+.......... ........++|||+|||..+|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|+
T Consensus 167 ~~~~~~~~~~~~----~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 167 AEKNRAAKAATH----QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred hhhhhhhhcccc----cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 443322111100 0111123789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCC
Q 009920 162 RVLHKTF-HELNGKMVEVKRAVP 183 (522)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~p 183 (522)
+||+.++ .+|.+++|+|.++..
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccC
Confidence 9999888 899999999999884
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4e-28 Score=248.24 Aligned_cols=178 Identities=26% Similarity=0.424 Sum_probs=148.4
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccC-CeEEEEeec
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID-GRTVEAKKA 80 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~-Gr~I~V~~a 80 (522)
..|.|||+.||.|+.|+||+.+|++.|+|.+++||+|+.++.+||||||.|+++++|++|| +|+++|. ||.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999 8999884 888887665
Q ss_pred CCCccccc------------------------------------ccc---------------------------------
Q 009920 81 VPRDDQNM------------------------------------LNR--------------------------------- 91 (522)
Q Consensus 81 ~~k~~~~~------------------------------------~~~--------------------------------- 91 (522)
..+...-. .++
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 33311000 000
Q ss_pred ----ccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhc
Q 009920 92 ----NTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (522)
Q Consensus 92 ----~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~ 167 (522)
............+.+.|||+||+.++|||.|+++|++||.|++|+.++| ||||+|.++++|.+|++.+
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKET 313 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHh
Confidence 0000000112345578999999999999999999999999999999977 9999999999999999999
Q ss_pred C-CccCCeEEEEEEcCCCCCCCC
Q 009920 168 F-HELNGKMVEVKRAVPKEFSPG 189 (522)
Q Consensus 168 ~-~~l~Gr~I~V~~a~pk~~~~~ 189 (522)
+ ++|+|..|+|.+|+|..+.+.
T Consensus 314 ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 314 NGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred cCceecCceEEEEecCChhhhcc
Confidence 9 999999999999999876553
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2.9e-28 Score=253.47 Aligned_cols=183 Identities=21% Similarity=0.408 Sum_probs=152.3
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCC--eEEEEee
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG--RTVEAKK 79 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G--r~I~V~~ 79 (522)
..++|||+|||.++++++|+++|++||+|..++|++++.++.+++||||+|.+.++|++|| +++..+.+ ++|.|++
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4678999999999999999999999999999999999888899999999999999999999 88888876 5778887
Q ss_pred cCCCcccccc--cc-------ccCC-------------------------------------------------CCC---
Q 009920 80 AVPRDDQNML--NR-------NTSS-------------------------------------------------IHS--- 98 (522)
Q Consensus 80 a~~k~~~~~~--~~-------~~~~-------------------------------------------------~~~--- 98 (522)
+......... .. .... ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7544311000 00 0000 000
Q ss_pred ---------------CCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHH
Q 009920 99 ---------------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163 (522)
Q Consensus 99 ---------------~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~A 163 (522)
........+|||+|||+++++++|+++|++||.|++|+|++|+.|+++||||||+|++.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00012233699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-CccCCeEEEEEEcCCCCC
Q 009920 164 LHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 164 l~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
|+.++ ..|+||+|+|.++.+|..
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 99888 899999999999998764
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.2e-27 Score=261.13 Aligned_cols=175 Identities=25% Similarity=0.403 Sum_probs=138.9
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccC-CeEEEEeec
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID-GRTVEAKKA 80 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~-Gr~I~V~~a 80 (522)
..++|||+|||++++|++|+++|++||+|.+|+|++| .++++||||||+|.++|+|++|| +++.+|. ++.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4589999999999999999999999999999999999 68999999999999999999999 7777774 565554433
Q ss_pred CCCcc----------c--------------------------cc----------------------ccccc---------
Q 009920 81 VPRDD----------Q--------------------------NM----------------------LNRNT--------- 93 (522)
Q Consensus 81 ~~k~~----------~--------------------------~~----------------------~~~~~--------- 93 (522)
..... . .. .....
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 21000 0 00 00000
Q ss_pred -----CCC-CCCCCCCCcceeEecCCCCCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHH
Q 009920 94 -----SSI-HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165 (522)
Q Consensus 94 -----~~~-~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~f--G~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~ 165 (522)
... .........++|||+|||+++||++|+++|++| |+|++|++++ +||||+|+++++|++||+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHH
Confidence 000 000112345789999999999999999999999 9999998764 499999999999999999
Q ss_pred hcC-CccCCeEEEEEEcCCCCCC
Q 009920 166 KTF-HELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 166 ~~~-~~l~Gr~I~V~~a~pk~~~ 187 (522)
.++ .+|++++|+|++++|+...
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcc
Confidence 888 8999999999999987654
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=251.47 Aligned_cols=174 Identities=27% Similarity=0.495 Sum_probs=153.4
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH---HcccccCC--eEEE
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI---MDKHMIDG--RTVE 76 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl---~~~~~i~G--r~I~ 76 (522)
|.+.-+|||+-||+.++|+||+++||+||.|.+|.|++||.|+.++|||||.|.+.++|.+|+ .|.+.|.| ..|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 356778999999999999999999999999999999999999999999999999999999999 44555654 5777
Q ss_pred EeecCCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC
Q 009920 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156 (522)
Q Consensus 77 V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s 156 (522)
|++|..+.+.. .+.++|||+-|++.+||+||+++|.+||.|++|.|++|.. +.+||||||+|.+
T Consensus 111 vk~Ad~E~er~---------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fst 174 (510)
T KOG0144|consen 111 VKYADGERERI---------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFST 174 (510)
T ss_pred ecccchhhhcc---------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEeh
Confidence 77776554332 3567999999999999999999999999999999999987 8999999999999
Q ss_pred HHHHHHHHHhcC--CccCC--eEEEEEEcCCCCCCCCCC
Q 009920 157 EEAVDRVLHKTF--HELNG--KMVEVKRAVPKEFSPGPS 191 (522)
Q Consensus 157 ~e~A~~Al~~~~--~~l~G--r~I~V~~a~pk~~~~~~~ 191 (522)
+|.|..||+.++ +++.| .+|.|++|++++++..+.
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 999999999998 47777 579999999988776544
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9e-28 Score=232.39 Aligned_cols=176 Identities=28% Similarity=0.499 Sum_probs=154.1
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCC
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~ 82 (522)
+-.|||+.|..+++-|+||+.|.+||+|.+++|++|..|.++|||+||.|..+++|+.|| |+++-|..|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 456999999999999999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred CccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHH
Q 009920 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (522)
Q Consensus 83 k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~ 162 (522)
|..............-.....+.++|||+|++..+||++|++.|++||+|.+|+|.++ +||+||.|++.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 7633222222211112334457889999999999999999999999999999999988 5699999999999999
Q ss_pred HHHhcC-CccCCeEEEEEEcCCCCC
Q 009920 163 VLHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 163 Al~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
||..++ .+|.|+.|++.|-+....
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCCC
Confidence 999888 899999999999875543
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=1.9e-26 Score=254.87 Aligned_cols=166 Identities=29% Similarity=0.505 Sum_probs=148.7
Q ss_pred EEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCCCc
Q 009920 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPRD 84 (522)
Q Consensus 7 ~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~k~ 84 (522)
.|||+|||.++||++|+++|++||+|++|+|++|+.|++++|||||+|.++++|++|| ++...|.+++|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999999999999999999999999999999 78888999999999875432
Q ss_pred cccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHH
Q 009920 85 DQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164 (522)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al 164 (522)
... .....+|||.|||.++++++|+++|++||.|.+|+|+.+. ++++||||||+|+++++|++|+
T Consensus 82 ~~~--------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai 146 (562)
T TIGR01628 82 SLR--------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAI 146 (562)
T ss_pred ccc--------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHH
Confidence 111 1234579999999999999999999999999999999886 4788999999999999999999
Q ss_pred HhcC-CccCCeEEEEEEcCCCCCC
Q 009920 165 HKTF-HELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 165 ~~~~-~~l~Gr~I~V~~a~pk~~~ 187 (522)
++++ ..++++.|.|....++..+
T Consensus 147 ~~lng~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 147 QKVNGMLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred HHhcccEecCceEEEecccccccc
Confidence 9998 8999999999876655443
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=2.1e-26 Score=254.53 Aligned_cols=182 Identities=28% Similarity=0.520 Sum_probs=156.0
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccC----CeEEEE
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID----GRTVEA 77 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~----Gr~I~V 77 (522)
..++|||+|||+++||++|+++|++||+|++++|+++. +++++|||||+|.++++|++|+ +++..|. ++.|.|
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 45779999999999999999999999999999999986 5899999999999999999999 8999999 999999
Q ss_pred eecCCCcccccccccc--CCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEec
Q 009920 78 KKAVPRDDQNMLNRNT--SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155 (522)
Q Consensus 78 ~~a~~k~~~~~~~~~~--~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~ 155 (522)
.++.++.+........ .............+|||+||++++|+++|+++|++||.|++|+|+.| .++++||||||+|+
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFS 334 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeC
Confidence 9887765542211111 00111112345678999999999999999999999999999999999 56899999999999
Q ss_pred CHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 009920 156 SEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 156 s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~~ 187 (522)
++++|++|++.++ ..|+||+|.|.++.+++.+
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 9999999999888 8999999999999987653
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=4.6e-25 Score=240.68 Aligned_cols=178 Identities=18% Similarity=0.346 Sum_probs=143.4
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhcc------------CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-Hccc
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRY------------GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKH 68 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~------------G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~ 68 (522)
++..++|||+|||+++|+++|+++|+++ ..|..+.+ .+.++||||+|.++|+|++|| +++.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 4678999999999999999999999975 23444444 345789999999999999999 9999
Q ss_pred ccCCeEEEEeecCCCcccccc-----cccc----C----CCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEE
Q 009920 69 MIDGRTVEAKKAVPRDDQNML-----NRNT----S----SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDV 135 (522)
Q Consensus 69 ~i~Gr~I~V~~a~~k~~~~~~-----~~~~----~----~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v 135 (522)
.|.++.|.|............ .... . ...........++|||+|||..+|+++|+++|++||.|+.+
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 999999999765432211000 0000 0 00111123456799999999999999999999999999999
Q ss_pred EEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCC
Q 009920 136 VVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKE 185 (522)
Q Consensus 136 ~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~ 185 (522)
.|++++.+++++|||||+|.+.++|++||+.++ ..|.+++|.|+++....
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999999999999999999999999888 89999999999987543
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=4.7e-25 Score=212.32 Aligned_cols=169 Identities=25% Similarity=0.489 Sum_probs=154.3
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEee
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
++..++|.|.-||..+|+|||+.+|...|+|++|++++|+-++.+.||+||.|.+++||++|+ +++..+..++|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 345678999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHH
Q 009920 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (522)
Q Consensus 80 a~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (522)
+.|..+. .+...|||.+||+++|..||+++|++||.|...+|+.|..|+.+||.+||.|+-+++
T Consensus 118 ARPSs~~----------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 118 ARPSSDS----------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred ccCChhh----------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 9876543 345689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC-CccCC--eEEEEEEcCCCCC
Q 009920 160 VDRVLHKTF-HELNG--KMVEVKRAVPKEF 186 (522)
Q Consensus 160 A~~Al~~~~-~~l~G--r~I~V~~a~pk~~ 186 (522)
|++||+.++ ++--| .+|.|+++..+..
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 999999888 54444 6899999986543
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=2.8e-24 Score=233.56 Aligned_cols=175 Identities=18% Similarity=0.304 Sum_probs=141.8
Q ss_pred CCCcEEEECCCCC-CCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEee
Q 009920 3 SDLGKLFIGGISW-DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~-~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
...++|||+|||+ ++|+++|+++|++||.|++|+|++++ ++||||+|.++++|++|| ++++.|.+++|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3568999999998 69999999999999999999999874 589999999999999999 999999999999998
Q ss_pred cCCCccccccccc------------cCCCC--C-------CCCCCCcceeEecCCCCCCCHHHHHHHHhhcCC--eeEEE
Q 009920 80 AVPRDDQNMLNRN------------TSSIH--S-------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGT--ITDVV 136 (522)
Q Consensus 80 a~~k~~~~~~~~~------------~~~~~--~-------~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~--I~~v~ 136 (522)
++.+......... ....+ . .....++++|||.|||.++|+++|+++|++||. |+.|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 7654321110000 00000 0 001235679999999999999999999999998 88888
Q ss_pred EEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeE------EEEEEcCCC
Q 009920 137 VMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKM------VEVKRAVPK 184 (522)
Q Consensus 137 i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~------I~V~~a~pk 184 (522)
+..++. ..+++|||+|++.++|++||.+++ ++|.++. |+|++++++
T Consensus 428 ~~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 865443 257899999999999999999988 7999885 999999865
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=4e-24 Score=232.29 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=139.1
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH----HcccccCCeEEEEeec
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI----MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl----~~~~~i~Gr~I~V~~a 80 (522)
+++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|.++|+|++|| ++...|.+++|.|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999864 479999999999999999 2678999999999999
Q ss_pred CCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 009920 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 81 ~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
..++...... ............+|+|.||++++|+++|+++|++||.|++|.|++++. +++|||+|++.++|
T Consensus 76 ~~~~~~~~~~----~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 76 TSQEIKRDGN----SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred CCcccccCCC----CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 7654222111 000111223456899999999999999999999999999999987653 46899999999999
Q ss_pred HHHHHhcC-CccCC--eEEEEEEcCCCC
Q 009920 161 DRVLHKTF-HELNG--KMVEVKRAVPKE 185 (522)
Q Consensus 161 ~~Al~~~~-~~l~G--r~I~V~~a~pk~ 185 (522)
++|++.++ .+|.+ +.|+|++++++.
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 99999888 78865 589999988754
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=226.39 Aligned_cols=181 Identities=27% Similarity=0.490 Sum_probs=151.7
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCC
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~ 82 (522)
.-+|+|+||||.|.+.+|+.+|+.||.|++|.|.+.++ ++..|||||+|.+..+|++|| +|.++|++|+|-|.||++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 46899999999999999999999999999999998776 555599999999999999999 999999999999999987
Q ss_pred Cccccccc----------------cc--c------------------C--C------------------CCC--------
Q 009920 83 RDDQNMLN----------------RN--T------------------S--S------------------IHS-------- 98 (522)
Q Consensus 83 k~~~~~~~----------------~~--~------------------~--~------------------~~~-------- 98 (522)
+...+... .. . . . ...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 64322100 00 0 0 0 000
Q ss_pred ----------CCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC
Q 009920 99 ----------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 99 ----------~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
.......++|||+|||+++||++|.++|++||+|..+.|+.++.|++++|.|||.|.++.++++||++..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0001112689999999999999999999999999999999999999999999999999999999999872
Q ss_pred -------CccCCeEEEEEEcCCCCC
Q 009920 169 -------HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 169 -------~~l~Gr~I~V~~a~pk~~ 186 (522)
..|+||.|.|..|.++..
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHH
Confidence 368999999999998764
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=225.62 Aligned_cols=186 Identities=22% Similarity=0.458 Sum_probs=158.9
Q ss_pred CCCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEe
Q 009920 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~ 78 (522)
|+++..||||++||++++.++|.++|+.+|+|..|.++.++.+..+|||+||.|+-.|++++|+ .+...+.||.|.|+
T Consensus 1 ~n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 1 ENKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred CCCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccc
Confidence 4556689999999999999999999999999999999999999999999999999999999999 77788999999999
Q ss_pred ecCCCccccccccccCCC-----CC-CC----CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcce
Q 009920 79 KAVPRDDQNMLNRNTSSI-----HS-SP----GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRG 148 (522)
Q Consensus 79 ~a~~k~~~~~~~~~~~~~-----~~-~~----~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG 148 (522)
.+.++...+......... .. .+ ...+.-+|.|+|||+.+.+.+|+.+|++||.|.+|.|++.+++ +..|
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klcG 159 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KLCG 159 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-Cccc
Confidence 998876554211111100 00 00 1123568999999999999999999999999999999987774 4559
Q ss_pred EEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCC
Q 009920 149 FGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 149 ~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~~ 187 (522)
||||+|....+|++||+.++ ++|+||+|.|+||.++...
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 99999999999999999999 8999999999999998754
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=1.2e-23 Score=229.42 Aligned_cols=181 Identities=18% Similarity=0.369 Sum_probs=147.2
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
..++|||+|||+++|+++|+++|++||+|+.+.|++++.+++++|||||+|.++++|++|| ++++.|.+++|.|+++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 3579999999999999999999999999999999999999999999999999999999999 89999999999999986
Q ss_pred CCcccccccccc---------C---CCCCCCCCCCcceeEecCCCCC--C--------CHHHHHHHHhhcCCeeEEEEEe
Q 009920 82 PRDDQNMLNRNT---------S---SIHSSPGPGRTKKIFVGGLAST--V--------TESDFKKYFDQFGTITDVVVMY 139 (522)
Q Consensus 82 ~k~~~~~~~~~~---------~---~~~~~~~~~~~~~LfVgnLp~~--v--------teedL~~~F~~fG~I~~v~i~~ 139 (522)
............ . .........++++|+|.||... + ..++|+++|++||.|++|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 543322111110 0 0000112335788999999642 1 2368999999999999999987
Q ss_pred cC---CCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 009920 140 DH---NTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 140 d~---~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
+. .+...+|++||+|+++++|++||+.|+ ..|+|+.|.|.+....
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 53 344567999999999999999999999 8999999999997643
No 20
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=2.6e-24 Score=198.13 Aligned_cols=168 Identities=30% Similarity=0.474 Sum_probs=152.4
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
...+|||+||+..++|+-|.|+|-+.|+|++++|.+|+.+...+|||||+|.++|+|+-|+ ++...+-+|+|+|.++.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4579999999999999999999999999999999999999999999999999999999999 89889999999999887
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCcceEEEEEecCHHHH
Q 009920 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD-VVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 82 ~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~-v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
...+.. ....+|||+||.+.++|..|.++|+.||+|.. .+|++|++|+.+++|+||.|++.|++
T Consensus 88 ~~~~nl---------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 88 AHQKNL---------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred cccccc---------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 222111 23478999999999999999999999999755 59999999999999999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCCC
Q 009920 161 DRVLHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
.+|++.++ +.+..++|.|+++..+..
T Consensus 153 d~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999999 889999999999986654
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=6.7e-24 Score=207.42 Aligned_cols=147 Identities=24% Similarity=0.535 Sum_probs=136.4
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCCC
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~k 83 (522)
-+|||+|||.++++.+|+.+|++||+|++|.|+++ |+||..+|+..|+.|| ++.-+|++..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 37999999999999999999999999999999986 9999999999999999 8888999999999988765
Q ss_pred ccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHH
Q 009920 84 DDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163 (522)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~A 163 (522)
. ..+.+|+|+||.+.++.+||++.|++||+|.+++|++| |+||+|+..++|..|
T Consensus 75 s------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 S------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEA 128 (346)
T ss_pred C------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHH
Confidence 2 24678999999999999999999999999999999976 999999999999999
Q ss_pred HHhcC-CccCCeEEEEEEcCCCCC
Q 009920 164 LHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 164 l~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
++.++ .+++|++++|..+..+-+
T Consensus 129 ir~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred Hhcccccccccceeeeeeeccccc
Confidence 99888 899999999999887653
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=1.4e-21 Score=210.54 Aligned_cols=176 Identities=22% Similarity=0.388 Sum_probs=141.8
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCC
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~ 82 (522)
.++|||+|||.++||++|+++|++||+|..|.|++++.++++++||||+|.+.++|++|+ +++..|.+++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999999998999999999999999999999 899999999999999653
Q ss_pred Cccccccc------------------------------cc---------c-------------------CC---------
Q 009920 83 RDDQNMLN------------------------------RN---------T-------------------SS--------- 95 (522)
Q Consensus 83 k~~~~~~~------------------------------~~---------~-------------------~~--------- 95 (522)
........ .. . ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21100000 00 0 00
Q ss_pred -------CCCCCCCCCcceeEecCCCCCCC----------HHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHH
Q 009920 96 -------IHSSPGPGRTKKIFVGGLASTVT----------ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158 (522)
Q Consensus 96 -------~~~~~~~~~~~~LfVgnLp~~vt----------eedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e 158 (522)
.........+++|+|.||....+ ++||++.|++||.|++|.|... ...|++||+|.+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 00000124567899999955544 3689999999999999988733 45799999999999
Q ss_pred HHHHHHHhcC-CccCCeEEEEEEcCCC
Q 009920 159 AVDRVLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 159 ~A~~Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
+|++|++.|+ ..|+|++|.|.+....
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999999999 8999999999987643
No 23
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.88 E-value=9.7e-20 Score=189.34 Aligned_cols=174 Identities=21% Similarity=0.412 Sum_probs=145.6
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecCC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~~ 82 (522)
+.-.|-|++|||+||++||++||+.+. |+++++.+ .+++.+|-|||||.+.|++++|| +++..+..|-|+|..+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 445688999999999999999999994 77766655 47999999999999999999999 889999999999999988
Q ss_pred CccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCcceEEEEEecCHHHHH
Q 009920 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD-VVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 83 k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~-v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
++......+..... ......|-+++||+.||++||.++|+..-.|.+ |.++.|+. .++.|.|||+|++.|+|+
T Consensus 86 ~e~d~~~~~~g~~s-----~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 86 AEADWVMRPGGPNS-----SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccccccccCCCCCC-----CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHH
Confidence 77655443322211 135678999999999999999999999866666 44555655 679999999999999999
Q ss_pred HHHHhcCCccCCeEEEEEEcCCCCC
Q 009920 162 RVLHKTFHELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 162 ~Al~~~~~~l~Gr~I~V~~a~pk~~ 186 (522)
+||+++.+.|..|.|+|..+...+.
T Consensus 160 ~Al~rhre~iGhRYIEvF~Ss~~e~ 184 (510)
T KOG4211|consen 160 IALGRHRENIGHRYIEVFRSSRAEV 184 (510)
T ss_pred HHHHHHHHhhccceEEeehhHHHHH
Confidence 9999999999999999998775543
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=4.9e-21 Score=184.70 Aligned_cols=180 Identities=27% Similarity=0.461 Sum_probs=149.3
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCC--eEEEEeec
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG--RTVEAKKA 80 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G--r~I~V~~a 80 (522)
..+|||.+||+.+|.+||+++|++||.|...+|+.|..|+.+||.+||.|...++|++|| ++++.-.+ .+|.|+.+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 467999999999999999999999999999999999999999999999999999999999 77776544 57888887
Q ss_pred CCCcccccc-----------ccccCCCCC------------------------------------CCCCCCcceeEecCC
Q 009920 81 VPRDDQNML-----------NRNTSSIHS------------------------------------SPGPGRTKKIFVGGL 113 (522)
Q Consensus 81 ~~k~~~~~~-----------~~~~~~~~~------------------------------------~~~~~~~~~LfVgnL 113 (522)
......... .+...+.|. +..+...-+|||-||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 543221110 000000000 111222358999999
Q ss_pred CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 009920 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 114 p~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
..+++|.-|.++|.+||.|..|+|++|..|.+.|||+||++.+-++|..||..++ ..|.+|.|.|.+...|
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999998 8999999999998755
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2e-21 Score=194.57 Aligned_cols=176 Identities=22% Similarity=0.501 Sum_probs=152.7
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCC
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~ 82 (522)
.|+|||+.|.++..||.|+..|..||+|++|.+.-|+.|+++|+||||||+-+|.|+.|+ ||...+.||.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999 999999999999974322
Q ss_pred Ccccc-ccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009920 83 RDDQN-MLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 83 k~~~~-~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
-...+ ....- ..+...-.+|||..+..+++|+||+.+|+.||+|+.|.+.+++.+...|||+||||++..+..
T Consensus 193 mpQAQpiID~v------qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 193 MPQAQPIIDMV------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred CcccchHHHHH------HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 11100 00000 001123468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCCC
Q 009920 162 RVLHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
.||..|+ .+|.|..|+|-.+..+..
T Consensus 267 eAiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred HHhhhcchhhcccceEecccccCCCc
Confidence 9999999 899999999998875543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2e-20 Score=195.83 Aligned_cols=156 Identities=29% Similarity=0.486 Sum_probs=142.7
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCCC
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~k 83 (522)
..|||+ +++||..|.++|+++++|++++|++|. | +-|||||.|.++++|++|| ++-..|++++|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999998 6 9999999999999999999 8999999999999987643
Q ss_pred ccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHH
Q 009920 84 DDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163 (522)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~A 163 (522)
.. .|||.||+++++.++|.++|+.||.|..|++.+|++- ++|| ||+|+++++|++|
T Consensus 76 ~~---------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 76 PS---------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKA 131 (369)
T ss_pred Cc---------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHH
Confidence 22 1999999999999999999999999999999999874 9999 9999999999999
Q ss_pred HHhcC-CccCCeEEEEEEcCCCCCCCCCC
Q 009920 164 LHKTF-HELNGKMVEVKRAVPKEFSPGPS 191 (522)
Q Consensus 164 l~~~~-~~l~Gr~I~V~~a~pk~~~~~~~ 191 (522)
|++++ ..+.+++|.|....+++.+..+.
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er~~~~ 160 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEEREAPL 160 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhhcccc
Confidence 99999 89999999999998877654433
No 27
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=5.2e-21 Score=185.07 Aligned_cols=184 Identities=21% Similarity=0.406 Sum_probs=152.5
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--Hccc-ccCC--eEEEEe
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKH-MIDG--RTVEAK 78 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~-~i~G--r~I~V~ 78 (522)
|+++|||+.|.+.-.|||++.+|..||+|++|.+.+.++ +.+||||||+|.+..+|+.|| ++.. .+.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 679999999999999999999999999999999999885 999999999999999999999 6553 4443 577788
Q ss_pred ecCCCccccccc--------------------------------------------------------------------
Q 009920 79 KAVPRDDQNMLN-------------------------------------------------------------------- 90 (522)
Q Consensus 79 ~a~~k~~~~~~~-------------------------------------------------------------------- 90 (522)
.+...+++....
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 876654311000
Q ss_pred ----------ccc-------------------------C-----------------CCC---------------------
Q 009920 91 ----------RNT-------------------------S-----------------SIH--------------------- 97 (522)
Q Consensus 91 ----------~~~-------------------------~-----------------~~~--------------------- 97 (522)
.++ . ...
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000 0 000
Q ss_pred ---------------------CCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC
Q 009920 98 ---------------------SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156 (522)
Q Consensus 98 ---------------------~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s 156 (522)
...+..+.+.|||-.||.+..+.||-++|-.||.|+..++..|+.|..+|+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00112344789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-CccCCeEEEEEEcCCCCCCC
Q 009920 157 EEAVDRVLHKTF-HELNGKMVEVKRAVPKEFSP 188 (522)
Q Consensus 157 ~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~~~ 188 (522)
+.++++||+.|+ ..|.=|+|+|..++||+..+
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999999999 89999999999999998643
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=1.5e-21 Score=205.13 Aligned_cols=183 Identities=25% Similarity=0.457 Sum_probs=157.3
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeec
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a 80 (522)
|+|.++||+-.|+..+++.+|.+||+.+|+|.+|.|+.|+.+.++||.|||+|.|.+.+..|| +.++.+.+.+|.|+..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 578899999999999999999999999999999999999999999999999999999999999 9999999999999876
Q ss_pred CCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 009920 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 81 ~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
........ ..........-..+..+|+|+||.++++|++|+.+|++||.|..|.+++|.+|++.|||+||+|.+.++|
T Consensus 256 Eaeknr~a--~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRAA--NASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHHH--hccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 54433311 1111111111123444599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCCC
Q 009920 161 DRVLHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
++|++.++ .+|.|+.|+|.....+..
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecc
Confidence 99999999 899999999988765543
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=2.3e-20 Score=200.80 Aligned_cols=174 Identities=24% Similarity=0.425 Sum_probs=147.1
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC---CCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEee
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT---GRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~t---g~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
.++|||.||++++|.++|+++|.+.|.|.+|.|.+.++. -.|.||+||+|.++++|++|+ ++.+.|+|+.|+|+.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 445999999999999999999999999999988766532 135699999999999999999 788999999999999
Q ss_pred cCCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHH
Q 009920 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (522)
Q Consensus 80 a~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (522)
+..+...... ...+......+|+|+|||+.++..+|+++|..||.|++|+|++.......+|||||+|.++++
T Consensus 595 S~~k~~~~~g-------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 595 SENKPASTVG-------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred ccCccccccc-------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 8722221111 111122336799999999999999999999999999999999886666779999999999999
Q ss_pred HHHHHHhcC-CccCCeEEEEEEcCCCC
Q 009920 160 VDRVLHKTF-HELNGKMVEVKRAVPKE 185 (522)
Q Consensus 160 A~~Al~~~~-~~l~Gr~I~V~~a~pk~ 185 (522)
|.+|+..+. ..|.||+|.++||....
T Consensus 668 a~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 668 AKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHhhcccceechhhheehhccch
Confidence 999999998 78999999999998543
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=6.3e-20 Score=187.58 Aligned_cols=182 Identities=23% Similarity=0.409 Sum_probs=150.2
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--Hcc-cccC--CeEEEEe
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDK-HMID--GRTVEAK 78 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~-~~i~--Gr~I~V~ 78 (522)
++++|||+.|++.+||+||+++|.+||.|++|.|++|.+ +.+||||||.|.++|.|..|| +|. +.+. ..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 478999999999999999999999999999999999985 999999999999999999999 554 3444 4689999
Q ss_pred ecCCCcccccccc-------------------------------------------------------------------
Q 009920 79 KAVPRDDQNMLNR------------------------------------------------------------------- 91 (522)
Q Consensus 79 ~a~~k~~~~~~~~------------------------------------------------------------------- 91 (522)
+|.+++++.....
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 9987654211000
Q ss_pred --------cc-CCCC-------------C---------------------------------------------------
Q 009920 92 --------NT-SSIH-------------S--------------------------------------------------- 98 (522)
Q Consensus 92 --------~~-~~~~-------------~--------------------------------------------------- 98 (522)
.. .... .
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 00 0000 0
Q ss_pred --------------------------------------------------------CCCCCCcceeEecCCCCCCCHHHH
Q 009920 99 --------------------------------------------------------SPGPGRTKKIFVGGLASTVTESDF 122 (522)
Q Consensus 99 --------------------------------------------------------~~~~~~~~~LfVgnLp~~vteedL 122 (522)
..+..+...|||.+||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 000011245999999999999999
Q ss_pred HHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCC
Q 009920 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 123 ~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
-..|..||.|+..++..|+.|+-+|+|+||.|++..+|.+||..|+ ..|..|+++|..++.+..
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999999999999999999999999999999999 899999999999876643
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.1e-18 Score=182.77 Aligned_cols=171 Identities=23% Similarity=0.472 Sum_probs=150.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
+|...|||+||++++|.++|.++|+.||+|++|+++++.+ + ++|| ||+|.++++|++|+ +|+..+.+++|.|-..
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 4566699999999999999999999999999999999975 4 9999 99999999999999 9999999999999888
Q ss_pred CCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 009920 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 81 ~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
..+++....... .......++|.+++.++++++|+++|..+|+|..+.++.+.. +++++|+||+|++.++|
T Consensus 151 ~~~~er~~~~~~--------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a 221 (369)
T KOG0123|consen 151 ERKEEREAPLGE--------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDA 221 (369)
T ss_pred cchhhhcccccc--------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHH
Confidence 776654432221 123556799999999999999999999999999999999987 45899999999999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcCCCC
Q 009920 161 DRVLHKTF-HELNGKMVEVKRAVPKE 185 (522)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~pk~ 185 (522)
+.|++.++ ..+.++.+.|..+..+.
T Consensus 222 ~~av~~l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 222 KKAVETLNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred HHHHHhccCCcCCccceeecccccch
Confidence 99999999 78888999999888744
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.8e-19 Score=172.07 Aligned_cols=140 Identities=21% Similarity=0.471 Sum_probs=120.7
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHcccccCCeEEEEeecC
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~I~V~~a~ 81 (522)
+++-|+|||+||..++||+-|..||.+.|+|+.|+|+.+ +|+|.++.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWAT 49 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhcccccc
Confidence 356799999999999999999999999999999999986 34555554
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009920 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
....+.+ +.......|||+.|...++-|+|++.|.+||+|.+++|++|..|.++|||+||.|..+++|+
T Consensus 50 ~p~nQsk-----------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAE 118 (321)
T KOG0148|consen 50 APGNQSK-----------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAE 118 (321)
T ss_pred CcccCCC-----------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHH
Confidence 4311111 11123457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCC
Q 009920 162 RVLHKTF-HELNGKMVEVKRAVPKE 185 (522)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~pk~ 185 (522)
+||+.|+ .-|..|.|+-.||..|.
T Consensus 119 nAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 119 NAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHhCCeeeccceeeccccccCc
Confidence 9999999 89999999999998776
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2.5e-17 Score=152.22 Aligned_cols=156 Identities=21% Similarity=0.330 Sum_probs=126.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
+.+++|||+|||.++-|+||+++|-|||.|.+|.|... .....||||+|+++.+|+.|| .+.-.++++.|.|+.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 56899999999999999999999999999999988543 345679999999999999999 8999999999999988
Q ss_pred CCCcccccccc----------ccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEE
Q 009920 81 VPRDDQNMLNR----------NTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFG 150 (522)
Q Consensus 81 ~~k~~~~~~~~----------~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~a 150 (522)
..-.......- ......-.+......+|.|.+||.+.+|+||+++..+-|.|....+.+| |.+
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 65432111000 0000011222334568999999999999999999999999999998877 379
Q ss_pred EEEecCHHHHHHHHHhcC
Q 009920 151 FITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 151 FVeF~s~e~A~~Al~~~~ 168 (522)
.|+|...|+++-|+.+++
T Consensus 154 vV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeeeeehhhHHHHHHhhc
Confidence 999999999999999887
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=3.4e-17 Score=150.34 Aligned_cols=84 Identities=31% Similarity=0.598 Sum_probs=79.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||+|||+++||++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.++ ++|++++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999999999999999999999999999999999877 8999999999999
Q ss_pred CCCCC
Q 009920 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
.+++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87654
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.74 E-value=1e-16 Score=176.03 Aligned_cols=79 Identities=20% Similarity=0.484 Sum_probs=75.2
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
..++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|.++++|++|| +|...|.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999999999999999999999999999 99999999999998876
Q ss_pred C
Q 009920 82 P 82 (522)
Q Consensus 82 ~ 82 (522)
+
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.70 E-value=4.2e-16 Score=159.64 Aligned_cols=177 Identities=27% Similarity=0.418 Sum_probs=144.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHh-ccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEee
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFS-RYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~-~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
+..|.+||.|||+++..++||++|. +.|+|+.|.++.|.. +|+||||.|||+++|.++||+ ++++++.+|+|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999996 579999999999974 999999999999999999999 999999999999986
Q ss_pred cCCCccccc---------------------------------------------ccc--cc-------------------
Q 009920 80 AVPRDDQNM---------------------------------------------LNR--NT------------------- 93 (522)
Q Consensus 80 a~~k~~~~~---------------------------------------------~~~--~~------------------- 93 (522)
....+..+. +.+ ..
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 654211000 000 00
Q ss_pred ----CCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-
Q 009920 94 ----SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF- 168 (522)
Q Consensus 94 ----~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~- 168 (522)
.+.+ ...+....++||.||.+.+..+.|++.|...|.|+.|.+-.|++ +.++|+|.++|+.+-.|-.||.+++
T Consensus 201 ~~Flr~~h-~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 201 ASFLRSLH-IFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhcc-CCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhcc
Confidence 0000 11233456899999999999999999999999999999999998 5899999999999999999999998
Q ss_pred CccCCeEEEEEEcC
Q 009920 169 HELNGKMVEVKRAV 182 (522)
Q Consensus 169 ~~l~Gr~I~V~~a~ 182 (522)
.-+..++..|....
T Consensus 279 ~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDR 292 (608)
T ss_pred CCCccccceeeccc
Confidence 56666777776644
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=9e-17 Score=147.58 Aligned_cols=83 Identities=45% Similarity=0.808 Sum_probs=78.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
...++|||+|||+++||++|+++|++||+|++|+|++++.|+++|+||||+|+++|+|++|| ++.++|++++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999 7899999999999998
Q ss_pred CCCcc
Q 009920 81 VPRDD 85 (522)
Q Consensus 81 ~~k~~ 85 (522)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 38
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=2.4e-16 Score=151.82 Aligned_cols=161 Identities=26% Similarity=0.478 Sum_probs=130.3
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCCC
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~k 83 (522)
.+|||++||+.+.+++|++||.+||+|.+|.|.. +|+||+|.++.+|+.|+ ++..+|.+.++.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999888755 58999999999999999 9999999988888888754
Q ss_pred cccccccc----ccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHH
Q 009920 84 DDQNMLNR----NTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (522)
Q Consensus 84 ~~~~~~~~----~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~ 159 (522)
........ ........+.....+.|+|.+|+..+.+++|+++|.++|++....+. +.++||+|.++++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhh
Confidence 32221111 11112222333456789999999999999999999999999555442 4489999999999
Q ss_pred HHHHHHhcC-CccCCeEEEEEEcC
Q 009920 160 VDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 160 A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
+++|+++++ .+|.++.|+|....
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhhcchhccchhhcCceeeecccC
Confidence 999999999 89999999995443
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.63 E-value=6.8e-15 Score=140.76 Aligned_cols=170 Identities=16% Similarity=0.326 Sum_probs=134.1
Q ss_pred CcEEEECCCCCCCCHHHHHH----HHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEe
Q 009920 5 LGKLFIGGISWDTDEERLKE----YFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e----~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~ 78 (522)
.+||||.||+..+..+||++ +|++||+|.+|...+ |.+.||.|||.|.+.+.|..|+ +++..+-++.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999999998 999999999888876 4689999999999999999999 99999999999999
Q ss_pred ecCCCcccccccc-------------------ccCCCC---------------CCCCCCCcceeEecCCCCCCCHHHHHH
Q 009920 79 KAVPRDDQNMLNR-------------------NTSSIH---------------SSPGPGRTKKIFVGGLASTVTESDFKK 124 (522)
Q Consensus 79 ~a~~k~~~~~~~~-------------------~~~~~~---------------~~~~~~~~~~LfVgnLp~~vteedL~~ 124 (522)
+|..+.+.....+ ++.... ......+...||+.|||..++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 8866543221100 000000 012244667899999999999999999
Q ss_pred HHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccC-CeEEEEEEcC
Q 009920 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN-GKMVEVKRAV 182 (522)
Q Consensus 125 ~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~-Gr~I~V~~a~ 182 (522)
+|++|.-.++|+++... ++.|||+|.++..+..|.+.+. ..|- ...+.|++++
T Consensus 166 lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999998643 4599999999888888887766 3333 6677776654
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.61 E-value=3.7e-15 Score=157.27 Aligned_cols=172 Identities=21% Similarity=0.416 Sum_probs=130.6
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCCC
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~k 83 (522)
++|||+||+.+++|++|+.+|++||.|+.|.+++|.+|+++|||+||+|.++++|++|+ +|+.+|.|+.|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 44999999999999999999999999999999999989999999999999999999998 9999999999998554332
Q ss_pred cccccc-----cc---------------cc------------------------------------CCCCCCCCC-----
Q 009920 84 DDQNML-----NR---------------NT------------------------------------SSIHSSPGP----- 102 (522)
Q Consensus 84 ~~~~~~-----~~---------------~~------------------------------------~~~~~~~~~----- 102 (522)
.+.... .. .+ .......+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 221110 00 00 000001111
Q ss_pred --CCcceeEecCC--CCCCC--------HHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-C
Q 009920 103 --GRTKKIFVGGL--ASTVT--------ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H 169 (522)
Q Consensus 103 --~~~~~LfVgnL--p~~vt--------eedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~ 169 (522)
.++.++.|.|+ |.+.| .|||.+.+.+||.|.+|.|.+. +-|+.||.|.++++|.+|+..++ .
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 33445566665 22222 2678888899999977766533 23899999999999999999999 7
Q ss_pred ccCCeEEEEEEcC
Q 009920 170 ELNGKMVEVKRAV 182 (522)
Q Consensus 170 ~l~Gr~I~V~~a~ 182 (522)
.|.+|+|..++-.
T Consensus 514 WF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 514 WFAGRMITAKYLP 526 (549)
T ss_pred hhccceeEEEEee
Confidence 9999999998753
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.60 E-value=4e-14 Score=147.81 Aligned_cols=176 Identities=20% Similarity=0.295 Sum_probs=134.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEE-EeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAV-IMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~-i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~ 81 (522)
....|.|++||+.|||+||.+||+.+-.|.+.. ++.++ .+++.|.|||+|++.|.|++|| .+++.|..|-|+|.++.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 356899999999999999999999997777733 45554 4889999999999999999999 99999999999997663
Q ss_pred CCcccccc------------------ccc-----------c--------------------------------------C
Q 009920 82 PRDDQNML------------------NRN-----------T--------------------------------------S 94 (522)
Q Consensus 82 ~k~~~~~~------------------~~~-----------~--------------------------------------~ 94 (522)
..+..... .+. . .
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 32211110 000 0 0
Q ss_pred C---CCCC-------CCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHH
Q 009920 95 S---IHSS-------PGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164 (522)
Q Consensus 95 ~---~~~~-------~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al 164 (522)
. .+.. ........++.++||+..++.+|..+|...-++ .|+|...+ +++..|.|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccchhhHhhh
Confidence 0 0000 000112578999999999999999999987665 55555544 4888999999999999999999
Q ss_pred HhcCCccCCeEEEEEEcC
Q 009920 165 HKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 165 ~~~~~~l~Gr~I~V~~a~ 182 (522)
.+....+..+-|++....
T Consensus 339 skd~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFLNG 356 (510)
T ss_pred ccCCcccCcceeeecccC
Confidence 999989999999987764
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.60 E-value=1e-14 Score=142.25 Aligned_cols=159 Identities=26% Similarity=0.485 Sum_probs=121.4
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCC
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~ 82 (522)
.++|||+|||+++|+++|+++|++||+|..+.|..++.++++++||||+|.++++|.+|+ ++...|.+++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 489999999999999999999999999999999999989999999999999999999999 788999999999999653
Q ss_pred ----Ccccccc----ccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEe
Q 009920 83 ----RDDQNML----NRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154 (522)
Q Consensus 83 ----k~~~~~~----~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF 154 (522)
+...... ..................+++.+++..+++.++...|..++.+..+.+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 2211100 00111122233345677899999999999999999999999997777776655444433334333
Q ss_pred cCHHHHHHH
Q 009920 155 DSEEAVDRV 163 (522)
Q Consensus 155 ~s~e~A~~A 163 (522)
.....+...
T Consensus 275 ~~~~~~~~~ 283 (306)
T COG0724 275 EASKDALES 283 (306)
T ss_pred hHHHhhhhh
Confidence 333333333
No 43
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2e-15 Score=144.80 Aligned_cols=79 Identities=42% Similarity=0.875 Sum_probs=74.3
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecCC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~~ 82 (522)
.-+||||++|||++++|+|+++||+||+|++++|+.|+.|+|+|||+||+|+|.|.|++|+ .-+..|+||+..++.|.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 4579999999999999999999999999999999999999999999999999999999999 557889999999988754
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=2.2e-14 Score=155.06 Aligned_cols=175 Identities=20% Similarity=0.296 Sum_probs=132.0
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEee
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
++..+.|+|+|||..+..++|.+.|..||+|..+.|.+.- --++|+|.++.+|++|+ +.-..+...++.+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G------~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG------TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCccc------ceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 3567889999999999999999999999999988554321 14999999999999999 666666666666655
Q ss_pred cCCCccc-----ccc-----c--------c---ccCCCCC--C-----------CCCCCcceeEecCCCCCCCHHHHHHH
Q 009920 80 AVPRDDQ-----NML-----N--------R---NTSSIHS--S-----------PGPGRTKKIFVGGLASTVTESDFKKY 125 (522)
Q Consensus 80 a~~k~~~-----~~~-----~--------~---~~~~~~~--~-----------~~~~~~~~LfVgnLp~~vteedL~~~ 125 (522)
+.....+ ... . + ....... . ......++|||.||++++|.++|+.+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 5322111 000 0 0 0000000 0 01112234999999999999999999
Q ss_pred HhhcCCeeEEEEEecCCCC---CcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009920 126 FDQFGTITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 126 F~~fG~I~~v~i~~d~~tg---~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
|.+.|.|..+.|.+.++.. .+.||+||+|.++++|++|++.|+ +.|+|+.|.|+++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999888766432 345999999999999999999999 99999999999988
No 45
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=4.8e-15 Score=149.94 Aligned_cols=181 Identities=22% Similarity=0.333 Sum_probs=141.2
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhc---c-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEe
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSR---Y-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~---~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~ 78 (522)
+.-.|.+++||+++++.||.+||.+ . +.++.|.+++.+ +++..|-|||.|..+++|+.|| +++..|..|.|++.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456788999999999999999963 2 245556666654 5999999999999999999999 89999999999998
Q ss_pred ecCCCccccccccccC---------------CCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCC-eeE--EEEEec
Q 009920 79 KAVPRDDQNMLNRNTS---------------SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGT-ITD--VVVMYD 140 (522)
Q Consensus 79 ~a~~k~~~~~~~~~~~---------------~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~-I~~--v~i~~d 140 (522)
+++..+-++..++... .....+......+|-+++||++++.|||-++|..|-. |.. |.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 8877665554433221 1111222334678999999999999999999998865 333 666666
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCC
Q 009920 141 HNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEF 186 (522)
Q Consensus 141 ~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~ 186 (522)
.+ +++.|.|||+|.++|+|.+|.++.+ +..+.|.|+|..+.-.+.
T Consensus 319 ~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 319 GQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred CC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 55 8999999999999999999999988 455699999988775543
No 46
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.5e-14 Score=141.18 Aligned_cols=100 Identities=20% Similarity=0.350 Sum_probs=93.9
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009920 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
..++-+||||.-|+.+++|.+|++.|+.||+|+.|.|+.|+.|+++||||||+|+++.++++|.+..+ .+|+++.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 44788999999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCC
Q 009920 180 RAVPKEFSPGPSRSSMIGYNN 200 (522)
Q Consensus 180 ~a~pk~~~~~~~r~~~gG~~~ 200 (522)
+...+..+.+.+|..++|.++
T Consensus 177 vERgRTvkgW~PRRLGGGLGg 197 (335)
T KOG0113|consen 177 VERGRTVKGWLPRRLGGGLGG 197 (335)
T ss_pred ecccccccccccccccCCcCC
Confidence 999999999999888777653
No 47
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=8.1e-15 Score=140.70 Aligned_cols=81 Identities=36% Similarity=0.645 Sum_probs=77.0
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcC
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (522)
..-+||||++|+|+++.|+|+++|++||+|++++|+.|+.|+++|||+||+|.|.|+|++|++..+..|+||+..|.+|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 009920 183 P 183 (522)
Q Consensus 183 p 183 (522)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 3
No 48
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=2.6e-14 Score=149.01 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=79.6
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009920 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
.....++|||++||+++||++|+++|++||+|++|+|++|+.++++||||||+|.++++|++||+.++ .+|.+++|+|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred EcCCCC
Q 009920 180 RAVPKE 185 (522)
Q Consensus 180 ~a~pk~ 185 (522)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 988754
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=3.1e-14 Score=156.27 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=97.5
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhcc--CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRY--GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~--G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
.++|||+|||+++||++|+++|++| |+|++|++++ +||||+|.++++|++|| ++.++|++++|+|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999998764 49999999999999999 8999999999999999
Q ss_pred CCCccccccc------------cccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCe
Q 009920 81 VPRDDQNMLN------------RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTI 132 (522)
Q Consensus 81 ~~k~~~~~~~------------~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I 132 (522)
+++....... ..............+.++++.+|++.++++.+.++|..+|.|
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~ 368 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPI 368 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCccc
Confidence 8865442110 000011112223467899999999999999999999998763
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=6.5e-14 Score=110.77 Aligned_cols=68 Identities=31% Similarity=0.771 Sum_probs=64.7
Q ss_pred EEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEE
Q 009920 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (522)
Q Consensus 8 LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~ 76 (522)
|||+|||+++|+++|+++|++||+|..++++.+ .+++.+++|||+|.++++|++|+ +++..+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 56899999999999999999999 899999999874
No 51
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.2e-13 Score=143.24 Aligned_cols=178 Identities=22% Similarity=0.408 Sum_probs=129.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCC-CC--Cccc---EEEEEecCHHHHHHHHHcccccCCeEEE
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRA-TG--RARG---FGFVVFADPAVAERVIMDKHMIDGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~-tg--~srG---~aFVeF~~~e~A~kAl~~~~~i~Gr~I~ 76 (522)
.-+++|||++||++++|++|...|..||.|. |......+ .+ -++| |+|+.|+++..+++.|..-.+ ...+.-
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 4578999999999999999999999999874 44442111 11 2467 999999999998887722222 222333
Q ss_pred EeecCCCcccccc-------ccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcce
Q 009920 77 AKKAVPRDDQNML-------NRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFD-QFGTITDVVVMYDHNTQRPRG 148 (522)
Q Consensus 77 V~~a~~k~~~~~~-------~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~-~fG~I~~v~i~~d~~tg~~rG 148 (522)
++...++.+.+.. .....-.......++.+||||+.||..++.++|..+|+ .||.|.-+-|-+|++-+.|||
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 3333332222211 11111122344567889999999999999999999998 699999999999999999999
Q ss_pred EEEEEecCHHHHHHHHHhcCCccC----CeEEEEEEcC
Q 009920 149 FGFITYDSEEAVDRVLHKTFHELN----GKMVEVKRAV 182 (522)
Q Consensus 149 ~aFVeF~s~e~A~~Al~~~~~~l~----Gr~I~V~~a~ 182 (522)
-+-|+|.+..+-.+||++-..+|+ .|+|+|+.-.
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 999999999999999997654333 3677776543
No 52
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.50 E-value=5.7e-13 Score=133.91 Aligned_cols=177 Identities=15% Similarity=0.327 Sum_probs=135.0
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEE--------EEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCe
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVE--------AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGR 73 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~--------v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr 73 (522)
-++.|||.|||.++|.+|+.++|++||.|.. |+|.++.. |+.||=|.|.|...|.++.|+ ++...+.++
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3456999999999999999999999997743 67888865 999999999999999999999 999999999
Q ss_pred EEEEeecCCCcccc--c-------------cccc-------cCCCCCCCCCCCcceeEecCCCC----CCC-------HH
Q 009920 74 TVEAKKAVPRDDQN--M-------------LNRN-------TSSIHSSPGPGRTKKIFVGGLAS----TVT-------ES 120 (522)
Q Consensus 74 ~I~V~~a~~k~~~~--~-------------~~~~-------~~~~~~~~~~~~~~~LfVgnLp~----~vt-------ee 120 (522)
+|+|+.|+-+..-. . .... .............++|.|.|+=. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 99998874321100 0 0000 00001122234457888888721 222 36
Q ss_pred HHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCC
Q 009920 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKE 185 (522)
Q Consensus 121 dL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~ 185 (522)
||++-+++||.|..|.|.-. .|.|.+.|.|.+.++|+.||+.|+ ..++||+|..+...-+.
T Consensus 292 dl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 77788899999999988744 357899999999999999999999 89999999988765443
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=2.5e-13 Score=107.40 Aligned_cols=69 Identities=30% Similarity=0.756 Sum_probs=65.2
Q ss_pred eEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEE
Q 009920 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (522)
Q Consensus 108 LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (522)
|||+|||.++|+++|+++|++||.|..+.++.+ .+++.+++|||+|+++++|++|++.++ ..+++++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 668899999999999999999999777 899999885
No 54
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.6e-13 Score=132.31 Aligned_cols=81 Identities=27% Similarity=0.468 Sum_probs=78.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
.|+++|.|.|||.+++|++|+++|.+||.|..|.|.+|++|+.+||||||.|.+.++|.+|| ++++-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46788999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCC
Q 009920 81 VPR 83 (522)
Q Consensus 81 ~~k 83 (522)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 886
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=2.8e-13 Score=108.09 Aligned_cols=68 Identities=34% Similarity=0.729 Sum_probs=62.2
Q ss_pred EEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEE
Q 009920 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (522)
Q Consensus 8 LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~ 76 (522)
|||+|||+++++++|+++|+++|.|..++++++++ ++.+++|||+|.++++|++|+ .+++.|++++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 899999999999999999999 556899999885
No 56
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=5.4e-13 Score=133.24 Aligned_cols=87 Identities=22% Similarity=0.536 Sum_probs=78.6
Q ss_pred CCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009920 100 PGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 100 ~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
+.....++|+|.|||+...|.||+.+|++||+|.+|+|+.+. .-+|||+||+|++.+||++|.++++ ..++||+|+|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344567899999999999999999999999999999999874 5689999999999999999999999 8999999999
Q ss_pred EEcCCCCCCC
Q 009920 179 KRAVPKEFSP 188 (522)
Q Consensus 179 ~~a~pk~~~~ 188 (522)
..|.++-..+
T Consensus 169 n~ATarV~n~ 178 (376)
T KOG0125|consen 169 NNATARVHNK 178 (376)
T ss_pred eccchhhccC
Confidence 9999875443
No 57
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=6.6e-13 Score=131.35 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=72.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecC
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~ 81 (522)
+..++|||+|||+++||++|+++|+.||+|++|+|++++. .++||||+|.++++|++|| +++..|.+++|+|.++.
T Consensus 2 ~~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 2 MQVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 3478999999999999999999999999999999999864 5799999999999999999 99999999999999976
Q ss_pred CC
Q 009920 82 PR 83 (522)
Q Consensus 82 ~k 83 (522)
..
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 54
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=6.2e-13 Score=128.26 Aligned_cols=83 Identities=24% Similarity=0.451 Sum_probs=79.2
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009920 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+..+|-|.||+++++|+||+++|.+||.|.+|.|.+|++|+.+||||||+|.++++|.+||+.++ +-++.-.|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3467889999999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred cCCC
Q 009920 181 AVPK 184 (522)
Q Consensus 181 a~pk 184 (522)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 59
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.41 E-value=5.5e-12 Score=129.04 Aligned_cols=170 Identities=15% Similarity=0.247 Sum_probs=132.3
Q ss_pred CcEEEECCCCCC-CCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 5 LGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 5 ~r~LfVgnLP~~-~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
.+.|-|.||-.+ +|++.|..+|.-||+|..|+|+.++.+ -|.|+|.|...|+.|+ ++++.|.+++|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 478889999887 899999999999999999999998653 7999999999999999 99999999999998876
Q ss_pred CCccccccccccC----------CCCC---------CCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCC
Q 009920 82 PRDDQNMLNRNTS----------SIHS---------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHN 142 (522)
Q Consensus 82 ~k~~~~~~~~~~~----------~~~~---------~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~ 142 (522)
...-+...+..+. ..+. .....++.+|++.|+|.+++||||++.|..-|-+++......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 5543322211110 1111 112256789999999999999999999998877654433322
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhcC-CccCCe-EEEEEEcCC
Q 009920 143 TQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK-MVEVKRAVP 183 (522)
Q Consensus 143 tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr-~I~V~~a~p 183 (522)
+.+-+|++++++.|+|..|+..++ +.+... .++|++++.
T Consensus 450 --kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 450 --KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 223399999999999999988887 777765 899998763
No 60
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=2.3e-12 Score=125.67 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=73.8
Q ss_pred CCCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEee
Q 009920 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKK 79 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~ 79 (522)
|..+..+|||+||++++||++|++||+.||+|.+|+|+++. +.+++|||+|+++++|+.|| +++..|.+++|.|..
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 77888999999999999999999999999999999999984 45689999999999999999 999999999999988
Q ss_pred cCCC
Q 009920 80 AVPR 83 (522)
Q Consensus 80 a~~k 83 (522)
....
T Consensus 78 ~~~y 81 (243)
T PLN03121 78 WGQY 81 (243)
T ss_pred Cccc
Confidence 7643
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=5e-12 Score=127.57 Aligned_cols=179 Identities=16% Similarity=0.310 Sum_probs=135.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
.-.+|||..+++|.+|+||+.+|+.||+|+.|.+.+++....+|||+||||.+......|+ ||-..+.|..|+|-++.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 3468999999999999999999999999999999999999999999999999999999999 89899999999886654
Q ss_pred CCcccccc-------------------------------------------c----------------------------
Q 009920 82 PRDDQNML-------------------------------------------N---------------------------- 90 (522)
Q Consensus 82 ~k~~~~~~-------------------------------------------~---------------------------- 90 (522)
........ +
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 33110000 0
Q ss_pred ---ccc--------------------------------C--------------CCCC--------------CCCCCCcce
Q 009920 91 ---RNT--------------------------------S--------------SIHS--------------SPGPGRTKK 107 (522)
Q Consensus 91 ---~~~--------------------------------~--------------~~~~--------------~~~~~~~~~ 107 (522)
++. . ..+. .-...+++.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 000 0 0000 001122345
Q ss_pred eEecCC--CCCCCH---HHHHHHHhhcCCeeEEEEEecCCCCCc----ceEEEEEecCHHHHHHHHHhcC-CccCCeEEE
Q 009920 108 IFVGGL--ASTVTE---SDFKKYFDQFGTITDVVVMYDHNTQRP----RGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (522)
Q Consensus 108 LfVgnL--p~~vte---edL~~~F~~fG~I~~v~i~~d~~tg~~----rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (522)
|.++|. |.+++| .+|++.+.+||.|.+|.|...+.+..- -=-.||+|....++.+|++.++ ..|.||+|.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 777776 555554 688999999999999999887765421 1136999999999999999999 889999987
Q ss_pred EEEcC
Q 009920 178 VKRAV 182 (522)
Q Consensus 178 V~~a~ 182 (522)
.+.-.
T Consensus 529 AE~YD 533 (544)
T KOG0124|consen 529 AEVYD 533 (544)
T ss_pred hhhhh
Confidence 76543
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.40 E-value=1.2e-12 Score=104.44 Aligned_cols=69 Identities=28% Similarity=0.685 Sum_probs=64.4
Q ss_pred eEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEE
Q 009920 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (522)
Q Consensus 108 LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (522)
|+|.|||++++++||+++|+.+|.|.++.+..+++ ++++++|||+|.++++|++|++.++ ..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 8999999999999999999999999 899999985
No 63
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=6.6e-13 Score=122.36 Aligned_cols=76 Identities=28% Similarity=0.518 Sum_probs=70.5
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCC
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~ 82 (522)
.++|||+||+.++++.||+.+|.+||+|.+|+|.+++. |||||||+++.+|++|+ |++..|++..|.|+.+.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 68999999999999999999999999999999998764 89999999999999999 999999999999998865
Q ss_pred Ccc
Q 009920 83 RDD 85 (522)
Q Consensus 83 k~~ 85 (522)
+..
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 543
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=9.2e-13 Score=115.64 Aligned_cols=82 Identities=23% Similarity=0.375 Sum_probs=76.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
+++++|||+||+.-++||+|.|+|+++|+|..|.|=.|+.+.++-|||||+|.+.++|+.|| .+.+.++.+.|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999 9999999999999887
Q ss_pred CCCc
Q 009920 81 VPRD 84 (522)
Q Consensus 81 ~~k~ 84 (522)
.--.
T Consensus 114 ~GF~ 117 (153)
T KOG0121|consen 114 AGFV 117 (153)
T ss_pred ccch
Confidence 5443
No 65
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.37 E-value=9e-12 Score=118.75 Aligned_cols=160 Identities=14% Similarity=0.275 Sum_probs=111.2
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEee-cCCCCCcccEEEEEecCHHHHHHHH--HcccccC---CeEEEEe
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMR-DRATGRARGFGFVVFADPAVAERVI--MDKHMID---GRTVEAK 78 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~-d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~---Gr~I~V~ 78 (522)
-|+|||.+||.|+...||..+|..|--.+.+.|.. ++.....+-+|||.|.+..+|.+|+ +++..++ +..|.|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 69999999999999999999999986555555533 3433345689999999999999999 8888876 5677776
Q ss_pred ecCCCcc--cccccccc-------------------CCCCC-----------------C---------------------
Q 009920 79 KAVPRDD--QNMLNRNT-------------------SSIHS-----------------S--------------------- 99 (522)
Q Consensus 79 ~a~~k~~--~~~~~~~~-------------------~~~~~-----------------~--------------------- 99 (522)
.++...+ +.+....+ ...+. .
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 6643322 11110000 00000 0
Q ss_pred -----------CCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC
Q 009920 100 -----------PGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 100 -----------~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
.......+|||.||..+|||++|+.+|+.|--...++|... .+ ...|||+|++.+.|..|+..+.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhh
Confidence 00011247999999999999999999999976666666432 12 3378999999888888885443
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.9e-12 Score=125.92 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=71.3
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCCC
Q 009920 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~pk 184 (522)
.++|||+|||+.+||++|+++|+.||+|++|.|+.|++ +++||||+|+++++|++||.+++..|.+++|+|+++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998864 478999999999999999976669999999999998754
Q ss_pred C
Q 009920 185 E 185 (522)
Q Consensus 185 ~ 185 (522)
+
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 67
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4.9e-12 Score=135.19 Aligned_cols=180 Identities=18% Similarity=0.360 Sum_probs=137.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
..+++||.+||...++++++|+++.||++....++++..++-+++|||.+|.++.....|+ +++..+.+++|.|..|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 4578999999999999999999999999999999999999999999999999999999999 99999999999998886
Q ss_pred CCccccccccccCC--C---CC---CCCCCCcceeEecCC--CCCC-CH-------HHHHHHHhhcCCeeEEEEEecCC-
Q 009920 82 PRDDQNMLNRNTSS--I---HS---SPGPGRTKKIFVGGL--ASTV-TE-------SDFKKYFDQFGTITDVVVMYDHN- 142 (522)
Q Consensus 82 ~k~~~~~~~~~~~~--~---~~---~~~~~~~~~LfVgnL--p~~v-te-------edL~~~F~~fG~I~~v~i~~d~~- 142 (522)
..........+... . .. .....++..|.+.|+ |.++ .+ |+|+..+.+||.|..|.|.++-.
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 65443333222100 0 00 111223344444443 1121 22 35566667899999999988722
Q ss_pred --CCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 009920 143 --TQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (522)
Q Consensus 143 --tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~p 183 (522)
..-..|-.||||.+.+++++|++.|. .++++|.|...+-.+
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 22335778999999999999999999 899999999888654
No 68
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=5.7e-12 Score=98.38 Aligned_cols=70 Identities=36% Similarity=0.696 Sum_probs=64.8
Q ss_pred EEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEe
Q 009920 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 7 ~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~ 78 (522)
+|||.|||.++++++|+++|++||+|.++++++++ +.++++|||+|.++++|++|+ +++..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 678999999999999999999 77789999998873
No 69
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=1.6e-12 Score=122.60 Aligned_cols=83 Identities=23% Similarity=0.469 Sum_probs=78.8
Q ss_pred CCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009920 100 PGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 100 ~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
+..+....|.|-||.+.++.++|+.+|++||.|-+|.|+.|+.|.+++|||||.|.+..+|+.|++.|+ ..|+|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 344567899999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEcC
Q 009920 179 KRAV 182 (522)
Q Consensus 179 ~~a~ 182 (522)
++|+
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9987
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3e-12 Score=112.49 Aligned_cols=83 Identities=20% Similarity=0.390 Sum_probs=77.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
..+++|||+||++.++||+|.++|+++|+|+.|.+-.|+.+..+-|||||+|.+.++|+.||+.++ ..|+.++|.|+|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 357899999999999999999999999999999999999999999999999999999999999988 8999999999997
Q ss_pred CCCC
Q 009920 182 VPKE 185 (522)
Q Consensus 182 ~pk~ 185 (522)
.--.
T Consensus 114 ~GF~ 117 (153)
T KOG0121|consen 114 AGFV 117 (153)
T ss_pred ccch
Confidence 6443
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=4.9e-12 Score=125.10 Aligned_cols=81 Identities=26% Similarity=0.554 Sum_probs=75.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
..-+||||.-|+.+++|.+|++.|++||+|+.|.|++++.|++++|||||+|+++.+..+|. .+...|+++.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999 7889999999999765
Q ss_pred CCC
Q 009920 81 VPR 83 (522)
Q Consensus 81 ~~k 83 (522)
..+
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 433
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=1.8e-12 Score=134.92 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=69.9
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCH--HHHHHHH--HcccccCCeEEEEee
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP--AVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~--e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
...+|||+||++++++++|+++|.+||.|.+|.|++ +|+ ||||||+|.+. +++++|| +++.+++|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 457899999999999999999999999999999994 456 99999999987 6899999 999999999999999
Q ss_pred cCCC
Q 009920 80 AVPR 83 (522)
Q Consensus 80 a~~k 83 (522)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9775
No 73
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.5e-11 Score=127.25 Aligned_cols=119 Identities=22% Similarity=0.411 Sum_probs=92.9
Q ss_pred cCHHHHHHHHHcccccCCeEEEEeecCCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeE
Q 009920 55 ADPAVAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD 134 (522)
Q Consensus 55 ~~~e~A~kAl~~~~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~ 134 (522)
.+.|+|.++|+..+ +..|+|+..+.+..-.... -..+.+...+.|||+.||.++.|+||.-+|++.|+|-+
T Consensus 42 ~~~eaal~al~E~t---gy~l~ve~gqrk~ggPpP~------weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e 112 (506)
T KOG0117|consen 42 QSEEAALKALLERT---GYTLVVENGQRKYGGPPPG------WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE 112 (506)
T ss_pred ccHHHHHHHHHHhc---CceEEEeccccccCCCCCc------ccCCCCCCCceEEecCCCccccchhhHHHHHhccceee
Confidence 34677778874433 4567776655443221111 22223367889999999999999999999999999999
Q ss_pred EEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc-CCeEEEEEEcC
Q 009920 135 VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL-NGKMVEVKRAV 182 (522)
Q Consensus 135 v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l-~Gr~I~V~~a~ 182 (522)
++||+|+.++.+||||||+|.+.++|++||+.++ ++| .||.|.|+.+.
T Consensus 113 lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 113 LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 9999999999999999999999999999999988 655 57888877654
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=1e-11 Score=120.99 Aligned_cols=79 Identities=34% Similarity=0.720 Sum_probs=76.2
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 009920 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~p 183 (522)
.++|||+|||..+|+++|+++|.+||.|..|.|+.|+.+++++|+|||+|.++++|+.|++.++ ..|.+++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999 899999999999654
No 75
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.3e-12 Score=122.36 Aligned_cols=87 Identities=32% Similarity=0.621 Sum_probs=81.9
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+.++|||++|..+|+|.-|...|-+||.|++|.|+.|.++++.|||+||+|+..|+|.+||..|+ .+|.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 456799999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCCCCC
Q 009920 182 VPKEFSPG 189 (522)
Q Consensus 182 ~pk~~~~~ 189 (522)
+|.+.+.+
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 99875543
No 76
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=1e-11 Score=96.52 Aligned_cols=69 Identities=35% Similarity=0.739 Sum_probs=64.3
Q ss_pred ECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEe
Q 009920 10 IGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 10 VgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~ 78 (522)
|.|||+++++++|+++|++||+|.++.+.+++.+++++++|||+|.+.++|++|+ +++..+.+++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999999998888899999999999999999999 77788899988773
No 77
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.29 E-value=3.1e-12 Score=120.62 Aligned_cols=78 Identities=35% Similarity=0.608 Sum_probs=74.7
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
....|.|-||.+.++.++|+.+|++||.|.+|.|.+|+.|..++|||||.|.++.+|++|| |+..+|++++|.|+.|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4678999999999999999999999999999999999999999999999999999999999 99999999999998764
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.28 E-value=1.9e-11 Score=95.41 Aligned_cols=71 Identities=34% Similarity=0.687 Sum_probs=66.1
Q ss_pred eeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009920 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 107 ~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
+|+|.+||..+++++|+++|++||+|+++.++.++ +.++++|||+|.+.++|++|++.++ ..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 6788999999999999999999988 89999999874
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=6.5e-12 Score=125.60 Aligned_cols=82 Identities=26% Similarity=0.577 Sum_probs=75.4
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
.-++|+|.|||+..-|.||+..|++||+|.+|.|+.+. .-||||+||+|++++||++|- +++..|.||+|+|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 35799999999999999999999999999999999985 469999999999999999998 99999999999999998
Q ss_pred CCcccc
Q 009920 82 PRDDQN 87 (522)
Q Consensus 82 ~k~~~~ 87 (522)
.+...+
T Consensus 173 arV~n~ 178 (376)
T KOG0125|consen 173 ARVHNK 178 (376)
T ss_pred hhhccC
Confidence 875443
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=3.2e-12 Score=135.73 Aligned_cols=80 Identities=35% Similarity=0.657 Sum_probs=76.6
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCCC
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~k 83 (522)
+.|||+|||++++|++|.++|++.|.|.+++++.|++|+++|||+|++|.+.++|++|+ ++..++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999 9999999999999998665
Q ss_pred cc
Q 009920 84 DD 85 (522)
Q Consensus 84 ~~ 85 (522)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 81
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.28 E-value=8.5e-11 Score=121.17 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=65.3
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
++|||+|||+++||+.|++-|..||.|..++|+.. +++|| .|.|.++++|++|+.+++ ..|+||.|+|++.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 67999999999999999999999999999999644 67776 899999999999999999 8999999999873
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.9e-11 Score=94.94 Aligned_cols=70 Identities=36% Similarity=0.721 Sum_probs=65.9
Q ss_pred ecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009920 110 VGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 110 VgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
|.+||..+++++|+++|++||.|.++.+..++.+.+++++|||+|.+.++|++|++.++ ..+.+++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999998889999999999999999999999998 88999999874
No 83
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.1e-11 Score=114.39 Aligned_cols=77 Identities=21% Similarity=0.513 Sum_probs=70.4
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
..++|||+||+..+++.||+.+|..||+|..|.|... +.|||||||+++.+|+.|+..|+ ++|+|..|.|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999998764 46899999999999999999999 89999999999987
Q ss_pred CCC
Q 009920 183 PKE 185 (522)
Q Consensus 183 pk~ 185 (522)
-+.
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 443
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.7e-11 Score=131.15 Aligned_cols=181 Identities=23% Similarity=0.413 Sum_probs=145.4
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhcc------------CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-Hccc
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRY------------GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKH 68 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~------------G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~ 68 (522)
....++++|.+||..++|+.+..+|..- -.|+.+.|-..+ .||||+|.+.++|..|+ ++..
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhcccch
Confidence 3567899999999999999999999653 236666665544 49999999999999999 8888
Q ss_pred ccCCeEEEEeecCCCccccccccc-------cCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Q 009920 69 MIDGRTVEAKKAVPRDDQNMLNRN-------TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH 141 (522)
Q Consensus 69 ~i~Gr~I~V~~a~~k~~~~~~~~~-------~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~ 141 (522)
.+.++.+.+............... .............++|||++||..+++++++++.+.||+++...++.|.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 889988888655433222111100 1111122334566899999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCCCCCC
Q 009920 142 NTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPKEFSP 188 (522)
Q Consensus 142 ~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk~~~~ 188 (522)
.++.+|+|||.+|.+......|+.-++ .++.+++|.|..|.+.....
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 999999999999999999999999999 89999999999998765543
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.25 E-value=1.6e-11 Score=125.65 Aligned_cols=171 Identities=11% Similarity=0.221 Sum_probs=122.8
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH----HcccccCCeEEEE
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI----MDKHMIDGRTVEA 77 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl----~~~~~i~Gr~I~V 77 (522)
...++.|.|+||||+++|+||.+++.+||.|+++.+++.++ .|||||+|++.|...+ .--..+.+++|.|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 34678999999999999999999999999999999988765 8999999999998865 2223566777777
Q ss_pred eecCCCccccccc--------------------ccc----CCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCee
Q 009920 78 KKAVPRDDQNMLN--------------------RNT----SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTIT 133 (522)
Q Consensus 78 ~~a~~k~~~~~~~--------------------~~~----~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~ 133 (522)
.++..++-..... .+. ......+.+...-+++|.++-+.++-|-|.++|++||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 6553221111000 000 0001122333456789999999999999999999999998
Q ss_pred EEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCC--eEEEEEEcC
Q 009920 134 DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG--KMVEVKRAV 182 (522)
Q Consensus 134 ~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~G--r~I~V~~a~ 182 (522)
+|.-....+ .. .|+|+|.+.+.|+.|...++ ..|-. +.|+|++++
T Consensus 179 KIiTF~Knn--~F--QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 179 KIITFTKNN--GF--QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEEeccc--ch--hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 876554322 12 58999999999999998888 54443 344555443
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=2.8e-11 Score=126.17 Aligned_cols=78 Identities=22% Similarity=0.463 Sum_probs=71.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCH--HHHHHHHHhcC-CccCCeEEEEE
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE--EAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~--e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
....+|||+||++.++++||+++|..||.|++|.|+ ++|+ ||||||+|.+. +++++||+.++ .++.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 456799999999999999999999999999999999 4456 89999999987 78999999999 89999999999
Q ss_pred EcCCC
Q 009920 180 RAVPK 184 (522)
Q Consensus 180 ~a~pk 184 (522)
.|+|.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99874
No 87
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.23 E-value=2.8e-11 Score=122.94 Aligned_cols=179 Identities=20% Similarity=0.303 Sum_probs=132.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecC
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~ 81 (522)
++...|..++|||..++.+|..+|+-.-.+.-.+.+.....++-.+++.|.|.|+|.-+.|+ .+++.+..|.|+|.++.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 45666788999999999999999986643333333333334677799999999999999999 89999999999999888
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCCcceEEEEEecCH
Q 009920 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF----GTITDVVVMYDHNTQRPRGFGFITYDSE 157 (522)
Q Consensus 82 ~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~f----G~I~~v~i~~d~~tg~~rG~aFVeF~s~ 157 (522)
..+-.....-.......-.....--.|-+++||+++++.|+.++|.+. +.++.|-+++.+ .+++.|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCH
Confidence 765433221111111111112233467889999999999999999743 234455555554 489999999999999
Q ss_pred HHHHHHHHhcCCccCCeEEEEEEcC
Q 009920 158 EAVDRVLHKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 158 e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (522)
++|++||.++...|.-|.|+|.++.
T Consensus 217 e~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 217 EDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999999998888888888776554
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=6e-11 Score=93.02 Aligned_cols=72 Identities=36% Similarity=0.703 Sum_probs=66.0
Q ss_pred EEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEee
Q 009920 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 7 ~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
+|+|.+||+++++++|+++|+.+|+|..+.+++++.+ +.+++|||+|.++++|+.|+ ++...+++++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988765 78999999999999999999 777779999998863
No 89
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=2e-11 Score=113.33 Aligned_cols=80 Identities=26% Similarity=0.473 Sum_probs=77.1
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
....+|||+||+..++++.|.++|-+.|+|+++.|++|+.++..+|||||||.++|+|+-|++.++ .+|-||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 456799999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred C
Q 009920 182 V 182 (522)
Q Consensus 182 ~ 182 (522)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 90
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=6e-11 Score=110.30 Aligned_cols=76 Identities=17% Similarity=0.441 Sum_probs=68.6
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
.+++|||+|||.++.|.||+++|.+||.|.+|.+... ..+..||||+|+++.+|+.||.--+ -++++.+|.|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4679999999999999999999999999999998654 3445699999999999999999888 79999999999975
No 91
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=3.3e-12 Score=118.38 Aligned_cols=79 Identities=29% Similarity=0.630 Sum_probs=74.8
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
+|+--|||++||++.||.||.-+|++||+|++|.+++|+.||+++||||+.|++......|+ +|+..|.+|.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 56778999999999999999999999999999999999999999999999999999999999 9999999999999765
Q ss_pred C
Q 009920 81 V 81 (522)
Q Consensus 81 ~ 81 (522)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.19 E-value=1e-10 Score=114.32 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=71.2
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~p 183 (522)
...+|||.||++.+||+||+++|+.||+|++|+|++|.. .+++|||+|+++++|+.||.+.+..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 357999999999999999999999999999999999854 45799999999999999998877999999999998764
Q ss_pred CC
Q 009920 184 KE 185 (522)
Q Consensus 184 k~ 185 (522)
..
T Consensus 81 y~ 82 (243)
T PLN03121 81 YE 82 (243)
T ss_pred cc
Confidence 43
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=1.3e-10 Score=91.02 Aligned_cols=73 Identities=33% Similarity=0.709 Sum_probs=67.4
Q ss_pred eeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009920 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 107 ~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
+|+|.+||..+++++|+++|+.+|.|..+.+..++.+ .++++|||+|.+.++|+.|++.++ ..+++++|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988775 778999999999999999999999 569999999864
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.7e-11 Score=116.58 Aligned_cols=86 Identities=29% Similarity=0.518 Sum_probs=80.7
Q ss_pred CCCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEe
Q 009920 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~ 78 (522)
|..+-|+|||++|..++||.-|...|-+||.|++|.|..|.++.+.|+|+||+|...|+|.+|| |+..++.||.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ecCCCccc
Q 009920 79 KAVPRDDQ 86 (522)
Q Consensus 79 ~a~~k~~~ 86 (522)
.|+|....
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99886544
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.16 E-value=3.1e-09 Score=108.04 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=124.8
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH----HcccccCCeEEEEee
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI----MDKHMIDGRTVEAKK 79 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl----~~~~~i~Gr~I~V~~ 79 (522)
.+-.|.|++|-..++|.||.|.++.||+|.-+.+|..+ ..|.|+|+|.+-|+.++ .+...|.++.-.+.+
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 34578999999999999999999999999888877654 38999999999999998 455667777777766
Q ss_pred cCCCccccccccccCCCCCCCCCCCccee--EecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCH
Q 009920 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKI--FVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157 (522)
Q Consensus 80 a~~k~~~~~~~~~~~~~~~~~~~~~~~~L--fVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~ 157 (522)
++.+...+.. . . .....+.| -|-|--+.+|.+-|.+++..+|+|.+|.|++. ++- .|.|||++.
T Consensus 104 Stsq~i~R~g----~---e--s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv 169 (494)
T KOG1456|consen 104 STSQCIERPG----D---E--SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSV 169 (494)
T ss_pred chhhhhccCC----C---C--CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechh
Confidence 6443322211 0 0 11223333 34455578999999999999999999999865 233 699999999
Q ss_pred HHHHHHHHhcC-CccC-C-eEEEEEEcCCCCC
Q 009920 158 EAVDRVLHKTF-HELN-G-KMVEVKRAVPKEF 186 (522)
Q Consensus 158 e~A~~Al~~~~-~~l~-G-r~I~V~~a~pk~~ 186 (522)
+.|++|.+.++ .+|- | ..|+|++|+|.+.
T Consensus 170 ~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 170 EVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred HHHHHHHhhcccccccccceeEEEEecCccee
Confidence 99999999999 5543 3 6789999998764
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.13 E-value=1.9e-09 Score=109.48 Aligned_cols=175 Identities=16% Similarity=0.212 Sum_probs=131.8
Q ss_pred CCcEEEECCCCCC-CCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 4 DLGKLFIGGISWD-TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 4 d~r~LfVgnLP~~-~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
+.+.++|-+|... ++.+.|..+|..||.|+.|++|+.+. +-|.||+-|..+.++|+ +++..+.|.+|.|..+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4678999999887 78899999999999999999999875 68999999999999999 9999999999999877
Q ss_pred CCCccccc----------------cccc-c----CCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCC-eeEEEEE
Q 009920 81 VPRDDQNM----------------LNRN-T----SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGT-ITDVVVM 138 (522)
Q Consensus 81 ~~k~~~~~----------------~~~~-~----~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~-I~~v~i~ 138 (522)
+..--... .+++ . .......-..++++|+.-|.|..+|||.|-++|....+ -++|+|.
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee
Confidence 54311110 0000 0 01111223457889999999999999999999987654 3566666
Q ss_pred ecCCCCCcceEEEEEecCHHHHHHHHHhcCC-ccCCe------EEEEEEcCCCC
Q 009920 139 YDHNTQRPRGFGFITYDSEEAVDRVLHKTFH-ELNGK------MVEVKRAVPKE 185 (522)
Q Consensus 139 ~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~-~l~Gr------~I~V~~a~pk~ 185 (522)
.-+. .++ -.+++||++.++|..||.+++| .|++. .+++.++.++.
T Consensus 441 p~ks-erS-ssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 441 PLKS-ERS-SSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred cccc-ccc-ccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 5553 333 2689999999999999999984 56553 35666665543
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.1e-10 Score=103.43 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=78.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...-.|||.++.+.+||+||.+.|..||+|+.|.+-.|+.|+-.||||+|+|++.+.|++|+..++ .+|.++.|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999999 8999999999998
Q ss_pred CCCCC
Q 009920 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
--+..
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 75543
No 98
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.4e-10 Score=98.46 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=72.7
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
..+.|||+|||+++|.||+.++|.+||.|..|+|=.++. .+|-|||+|++..+|++|+ ++...++++.+.|-..+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 467899999999999999999999999999999977655 5899999999999999999 99999999999998877
Q ss_pred CCcccc
Q 009920 82 PRDDQN 87 (522)
Q Consensus 82 ~k~~~~ 87 (522)
+.+..+
T Consensus 94 ~~~~~~ 99 (124)
T KOG0114|consen 94 PEDAFK 99 (124)
T ss_pred HHHHHH
Confidence 665443
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=8.1e-11 Score=104.34 Aligned_cols=79 Identities=23% Similarity=0.433 Sum_probs=74.7
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCCC
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~k 83 (522)
-.|||.++..++||++|.+.|..||+|+++.+-.|+.|+-.||||.|+|++.++|++|+ +|...|.+++|+|.|+-.+
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 36899999999999999999999999999999999999999999999999999999999 9999999999999998654
Q ss_pred c
Q 009920 84 D 84 (522)
Q Consensus 84 ~ 84 (522)
.
T Consensus 153 g 153 (170)
T KOG0130|consen 153 G 153 (170)
T ss_pred C
Confidence 3
No 100
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=3.2e-10 Score=96.36 Aligned_cols=81 Identities=17% Similarity=0.383 Sum_probs=73.4
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009920 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
+...+.|||.|||+++|.|++-++|.+||+|..|+|-..++| +|.|||.|++..+|++|++.+. ..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 346778999999999999999999999999999999877654 8899999999999999999998 799999999998
Q ss_pred cCCCC
Q 009920 181 AVPKE 185 (522)
Q Consensus 181 a~pk~ 185 (522)
-.+.+
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 77654
No 101
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.12 E-value=7.9e-11 Score=119.67 Aligned_cols=178 Identities=21% Similarity=0.297 Sum_probs=145.4
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-Hcc-cccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDK-HMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~-~~i~Gr~I~V~~a~ 81 (522)
..+++|++++.+.+.+.++..++.+.|.+..+.+........+++++.|.|+.++.+..|| +.. ..+..+.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 5788999999999999999999999999888888887778899999999999999999999 555 46677777665554
Q ss_pred CCccccccccccCCCCCCCCCCCcceeE-ecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 009920 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIF-VGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 82 ~k~~~~~~~~~~~~~~~~~~~~~~~~Lf-VgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
.+..+.. ............+++ |.+|++.+++++|+.+|..++.|..++++.++.+...+++++|+|.+.+..
T Consensus 167 ~~~~~~~------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 167 RRGLRPK------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred ccccccc------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 4431110 000011123444555 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccCCeEEEEEEcCCCCCC
Q 009920 161 DRVLHKTFHELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 161 ~~Al~~~~~~l~Gr~I~V~~a~pk~~~ 187 (522)
++++....+.+.++++.|.+..++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 241 KLALNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred HHHhhcccCcccCcccccccCCCCccc
Confidence 999988348999999999999887654
No 102
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.12 E-value=5.8e-11 Score=121.29 Aligned_cols=89 Identities=47% Similarity=0.795 Sum_probs=83.8
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~p 183 (522)
+.++|||++|+++++||.|++.|.+||+|.+|.+++|+.++++|||+||+|++++.+.++|....|.|+++.|+++.|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 009920 184 KEFSPGPSR 192 (522)
Q Consensus 184 k~~~~~~~r 192 (522)
+.......+
T Consensus 85 r~~~~~~~~ 93 (311)
T KOG4205|consen 85 REDQTKVGR 93 (311)
T ss_pred ccccccccc
Confidence 987655443
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.07 E-value=2.5e-10 Score=121.48 Aligned_cols=81 Identities=27% Similarity=0.572 Sum_probs=77.7
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
++|||+|+|++++|++|.++|+..|.|.+++++.|++|+++|||+|++|.+++++++|++.++ .++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999 8999999999998755
Q ss_pred CC
Q 009920 185 EF 186 (522)
Q Consensus 185 ~~ 186 (522)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 104
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.06 E-value=1.3e-09 Score=115.33 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=71.8
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCCCC
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~pk~ 185 (522)
.+|||.|||.++++++|+++|.+||.|++..|.......+..+|+||+|.+.++++.||++....|++++|.|+..++..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 45999999999999999999999999999988876533444489999999999999999999899999999999987654
Q ss_pred C
Q 009920 186 F 186 (522)
Q Consensus 186 ~ 186 (522)
.
T Consensus 369 ~ 369 (419)
T KOG0116|consen 369 R 369 (419)
T ss_pred c
Confidence 3
No 105
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.9e-11 Score=112.13 Aligned_cols=79 Identities=25% Similarity=0.535 Sum_probs=74.3
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
++.-|||++||+++||.||-.+|++||+|++|.+++|+.|++++||||+.|++..+..-|+.-++ ..|.+|.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 56689999999999999999999999999999999999999999999999999999998998888 89999999998654
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=1.4e-11 Score=135.80 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=129.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecC
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~ 81 (522)
++..++||.||+..+.+++|.+.|..++.+..+.|..-+++++.||+|||+|..++++.+|| ++...+.+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 45678999999999999999999999988877777655667899999999999999999999 44443333
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHH
Q 009920 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (522)
Q Consensus 82 ~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~ 161 (522)
..+|+|.++|+..|.++|+.++.++|.++++.++..+. ++++|.|+|.|.++.++.
T Consensus 736 -----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 736 -----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADAS 791 (881)
T ss_pred -----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhh
Confidence 23689999999999999999999999999999877765 899999999999999999
Q ss_pred HHHHhcC-CccCCeEEEEEEcCCCCCC
Q 009920 162 RVLHKTF-HELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~pk~~~ 187 (522)
+++.+.+ ..++-+-++|....|..++
T Consensus 792 ~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 792 RKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred hhcccchhhhhhhcCccccccCCcccc
Confidence 9998887 6777788888887764443
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.01 E-value=1.2e-09 Score=87.78 Aligned_cols=61 Identities=23% Similarity=0.492 Sum_probs=54.7
Q ss_pred HHHHHHHHh----hcCCeeEEE-EEecCCC--CCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009920 119 ESDFKKYFD----QFGTITDVV-VMYDHNT--QRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 119 eedL~~~F~----~fG~I~~v~-i~~d~~t--g~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
+++|+++|+ +||.|.+|. |+.++.+ ++++|++||+|.++++|++|++.++ ..+++|+|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678888888 999999995 7777777 8999999999999999999999988 89999999873
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.00 E-value=1.3e-09 Score=87.55 Aligned_cols=60 Identities=33% Similarity=0.521 Sum_probs=53.9
Q ss_pred CHHHHHHHHh----ccCCeEEEE-EeecCCC--CCcccEEEEEecCHHHHHHHH--HcccccCCeEEEE
Q 009920 18 DEERLKEYFS----RYGEVVEAV-IMRDRAT--GRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (522)
Q Consensus 18 teedL~e~F~----~~G~V~~v~-i~~d~~t--g~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V 77 (522)
.+++|+++|+ +||+|.+|. |+.++.+ +++|||+||+|.++++|++|+ +++..++++.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3678999998 999999995 7777666 899999999999999999999 8999999999976
No 109
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.97 E-value=8.2e-10 Score=109.16 Aligned_cols=72 Identities=22% Similarity=0.554 Sum_probs=67.7
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
.+|||+|||..+++.+|+.+|++||+|.+|+|+++ |+||+.+++.+++.||..++ -+|+|..|.|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999966 99999999999999999877 6999999999999877
Q ss_pred C
Q 009920 185 E 185 (522)
Q Consensus 185 ~ 185 (522)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 110
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.7e-10 Score=111.28 Aligned_cols=85 Identities=20% Similarity=0.349 Sum_probs=78.8
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009920 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
..+...|||-.|.+-+|++||+-+|+.||+|+.|.|++|..|+.+-.||||||++.+++++|.-+|+ ..|+.++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3567899999999999999999999999999999999999999999999999999999999999888 799999999998
Q ss_pred cCCCCC
Q 009920 181 AVPKEF 186 (522)
Q Consensus 181 a~pk~~ 186 (522)
+..-.+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 775444
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.94 E-value=2.8e-09 Score=81.58 Aligned_cols=55 Identities=25% Similarity=0.593 Sum_probs=49.3
Q ss_pred HHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 122 L~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
|+++|++||+|+++.+..++ +++|||+|.+.++|++|++.++ ..+.|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998664 5699999999999999999888 8999999999985
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=9.5e-10 Score=107.45 Aligned_cols=84 Identities=30% Similarity=0.518 Sum_probs=79.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
.|.|+|||-.||.+..+.||...|-.||.|++.+|..|+.|..+|.|+||.|.++..|+.|| ||+..|.-++|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999 9999999999999888
Q ss_pred CCCccc
Q 009920 81 VPRDDQ 86 (522)
Q Consensus 81 ~~k~~~ 86 (522)
.|++..
T Consensus 363 RPkdan 368 (371)
T KOG0146|consen 363 RPKDAN 368 (371)
T ss_pred CccccC
Confidence 777653
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.91 E-value=2.2e-09 Score=117.60 Aligned_cols=107 Identities=18% Similarity=0.339 Sum_probs=84.6
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCC
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~ 82 (522)
+|||||+.||+.++|+||+++|+.||+|.+|+++.. |+||||++....+|++|| ++++.+..+.|+|.|+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999999764 579999999999999999 899999999999999987
Q ss_pred CccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhh
Q 009920 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQ 128 (522)
Q Consensus 83 k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~ 128 (522)
+..+...+.-. ...|=|.-||++.-.+||+.+++.
T Consensus 495 ~G~kse~k~~w-----------D~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 495 KGPKSEYKDYW-----------DVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred CCcchhhhhhh-----------hcccCeeEeehHhcCHHHHHhhhh
Confidence 65443211100 112234445776555558887764
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.91 E-value=4.9e-09 Score=80.25 Aligned_cols=54 Identities=35% Similarity=0.662 Sum_probs=48.8
Q ss_pred HHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 22 LKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 22 L~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
|+++|++||+|+++++.+++ +++|||+|.+.++|++|+ +++..+.+++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998764 579999999999999999 8999999999999875
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-09 Score=109.10 Aligned_cols=81 Identities=28% Similarity=0.507 Sum_probs=76.6
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEee
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
......|||..|.+-+|+++|.-+|+.||+|.+|.|++|..|+.+..||||+|.+++++++|. |++..|+.++|.|..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 456789999999999999999999999999999999999999999999999999999999999 999999999999987
Q ss_pred cCC
Q 009920 80 AVP 82 (522)
Q Consensus 80 a~~ 82 (522)
++.
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 754
No 116
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=3.2e-10 Score=108.04 Aligned_cols=134 Identities=25% Similarity=0.302 Sum_probs=113.1
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
+..++|||.||...++|+-|.|+|-+-|+|..|.|..+++ .+.| ||||.|+++-.+.-|+ +|+..+.+++|.++.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~- 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL- 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc-
Confidence 4578999999999999999999999999999999988875 6777 9999999999999998 788888777766643
Q ss_pred CCCccccccccccCCCCCCCCCCCcceeEecC----CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC
Q 009920 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG----LASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156 (522)
Q Consensus 81 ~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgn----Lp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s 156 (522)
+.++ |.+.++++.+.+.|..-++|+.+++..+.+ ++++-+.||++..
T Consensus 84 ----------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr 134 (267)
T KOG4454|consen 84 ----------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQR 134 (267)
T ss_pred ----------------------------ccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhh
Confidence 2222 567789999999999999999999998876 7788899999988
Q ss_pred HHHHHHHHHhcC
Q 009920 157 EEAVDRVLHKTF 168 (522)
Q Consensus 157 ~e~A~~Al~~~~ 168 (522)
..+.-.++....
T Consensus 135 ~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 135 LCAVPFALDLYQ 146 (267)
T ss_pred hhcCcHHhhhhc
Confidence 777777765543
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.80 E-value=1.3e-08 Score=111.55 Aligned_cols=78 Identities=28% Similarity=0.551 Sum_probs=71.2
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.-++||||+.|+..++|+||+.+|+.||+|..|.++. +|++|||.+.+.++|++||++|. ..+..+.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4468999999999999999999999999999999874 47799999999999999999998 8999999999999
Q ss_pred CCCCC
Q 009920 182 VPKEF 186 (522)
Q Consensus 182 ~pk~~ 186 (522)
.-+..
T Consensus 493 ~g~G~ 497 (894)
T KOG0132|consen 493 VGKGP 497 (894)
T ss_pred ccCCc
Confidence 86643
No 118
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.76 E-value=1.5e-08 Score=107.57 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=73.8
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCC
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~ 82 (522)
.++|||.+|+..+-..+|+.+|++||+|+-++|+.+..+.-.|+|+||+|.+.++|.+|| ++.++|+++.|.|++++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 588999999999999999999999999999999999888889999999999999999999 999999999999988754
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.75 E-value=5.5e-09 Score=101.74 Aligned_cols=166 Identities=19% Similarity=0.335 Sum_probs=123.9
Q ss_pred EEECCCCCCCCHHH-H--HHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecCC
Q 009920 8 LFIGGISWDTDEER-L--KEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 8 LfVgnLP~~~teed-L--~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~~ 82 (522)
+++.++-.++..+- | ...|+.+-.+...+++++.. ...++++|+.|+....-.++. .+++.|.-+.|++...+.
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 44555544544443 3 56677776666677777765 677889999999888777776 445555555554443333
Q ss_pred CccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHH
Q 009920 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (522)
Q Consensus 83 k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~ 162 (522)
-++.... .-.....+||.+.|-.+++++.|.+.|.+|-.-...++++|+.|++++||+||.|.+.+++.+
T Consensus 178 wedPsl~----------ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~r 247 (290)
T KOG0226|consen 178 WEDPSLA----------EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVR 247 (290)
T ss_pred cCCcccc----------cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHH
Confidence 3222211 122456799999999999999999999999888889999999999999999999999999999
Q ss_pred HHHhcC-CccCCeEEEEEEcCCC
Q 009920 163 VLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 163 Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
|+..|+ +.++.|.|++....-+
T Consensus 248 Amrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 248 AMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred HHHhhcccccccchhHhhhhhHH
Confidence 999999 8889899887655433
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=3.2e-08 Score=100.19 Aligned_cols=81 Identities=30% Similarity=0.607 Sum_probs=71.2
Q ss_pred CCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC--CccCCeEE
Q 009920 99 SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF--HELNGKMV 176 (522)
Q Consensus 99 ~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~--~~l~Gr~I 176 (522)
++.....++|||++|-..++|.||+++|.+||+|+.|+++..+ ++|||+|.+.++|+.|.++.. ..|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3344556899999999999999999999999999999998653 499999999999999998876 58999999
Q ss_pred EEEEcCCCC
Q 009920 177 EVKRAVPKE 185 (522)
Q Consensus 177 ~V~~a~pk~ 185 (522)
+|.|..++.
T Consensus 296 ~i~Wg~~~~ 304 (377)
T KOG0153|consen 296 KIKWGRPKQ 304 (377)
T ss_pred EEEeCCCcc
Confidence 999999843
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=4e-08 Score=99.48 Aligned_cols=75 Identities=28% Similarity=0.570 Sum_probs=69.3
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH---HcccccCCeEEEEe
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI---MDKHMIDGRTVEAK 78 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl---~~~~~i~Gr~I~V~ 78 (522)
|...++|||++|-..++|.+|+++|.+||+|..++++..+ ++|||+|.+.+.|++|. .++..|+|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 4567899999998899999999999999999999998864 49999999999999998 78889999999999
Q ss_pred ecCC
Q 009920 79 KAVP 82 (522)
Q Consensus 79 ~a~~ 82 (522)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9988
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=1.2e-08 Score=113.47 Aligned_cols=159 Identities=22% Similarity=0.346 Sum_probs=124.6
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
.++++||++||+..+++.+|+..|..+|.|.+|.|-+-+. ++-.-|+||.|.+.+.+-+|+ +....|..-.+.+..-
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4678999999999999999999999999999999866532 455569999999999888887 4444443223333222
Q ss_pred CCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHH
Q 009920 81 VPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 81 ~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
.+ ....++.++|++|..++....|.+.|..||.|..|.+-... + ||+|.|++...+
T Consensus 449 ~~------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~--yayi~yes~~~a 504 (975)
T KOG0112|consen 449 QP------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----P--YAYIQYESPPAA 504 (975)
T ss_pred cc------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----c--ceeeecccCccc
Confidence 21 22467789999999999999999999999999988775432 2 999999999999
Q ss_pred HHHHHhcC-CccCC--eEEEEEEcCCCCC
Q 009920 161 DRVLHKTF-HELNG--KMVEVKRAVPKEF 186 (522)
Q Consensus 161 ~~Al~~~~-~~l~G--r~I~V~~a~pk~~ 186 (522)
++|++.+. ..|.+ ++|.|.++.+...
T Consensus 505 q~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 505 QAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred hhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 99998776 55554 7799999886544
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.65 E-value=6.1e-08 Score=105.17 Aligned_cols=179 Identities=12% Similarity=0.054 Sum_probs=125.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecC
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~ 81 (522)
.|.+.+-+++.++++++.|+++||... .|..+.|..+...+-..|-++|+|....++++|+ .+...+-.|.|++..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 567888899999999999999999754 2444455555443444789999999999999999 66666677888886554
Q ss_pred CCccccc-----ccc--ccCCCCC----------------CCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEE
Q 009920 82 PRDDQNM-----LNR--NTSSIHS----------------SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVM 138 (522)
Q Consensus 82 ~k~~~~~-----~~~--~~~~~~~----------------~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~ 138 (522)
.....-. ... .....|. ........+|||..||..+++.++.++|...-.|++...+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 3322110 000 0000000 0112345689999999999999999999998888884444
Q ss_pred ecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009920 139 YDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 139 ~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
....+.+.++.|||+|..++++.+|+.-.. +.+..|.|+|.-..
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 444557888999999999777777665544 67888888887533
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.64 E-value=1.6e-07 Score=89.24 Aligned_cols=80 Identities=24% Similarity=0.453 Sum_probs=73.5
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhcc-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRY-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
...-++|..||.-+.|.+|..+|.++ |.|..+++.|++.||.+|+||||+|+++|+|+-|. ||+-.+.++.|+|...
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34568999999999999999999998 88888899899999999999999999999999998 9999999999999887
Q ss_pred CCC
Q 009920 81 VPR 83 (522)
Q Consensus 81 ~~k 83 (522)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 665
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=1.2e-07 Score=100.71 Aligned_cols=79 Identities=25% Similarity=0.572 Sum_probs=74.4
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 009920 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~p 183 (522)
.+.|||.+|...+...||+.+|++||.|+-.+|+++..+.-.++|+||++.+.++|.+||+.++ .+|.|++|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 3579999999999999999999999999999999998888899999999999999999999999 899999999998763
No 126
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.57 E-value=1.1e-07 Score=100.88 Aligned_cols=79 Identities=27% Similarity=0.454 Sum_probs=68.6
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecCC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~~ 82 (522)
+..+|||+|||.++++++|+++|.+||+|+...|......++...|+||+|.+.++++.|| .+...|.+++|.|+...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4566999999999999999999999999999998775533555599999999999999999 778889999999986544
No 127
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.56 E-value=1.8e-07 Score=90.10 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=72.1
Q ss_pred CcceeEecCCCCCCCHHHHHH----HHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009920 104 RTKKIFVGGLASTVTESDFKK----YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~----~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
+..+|||.||++.+..++|++ +|++||.|.+|...+ |.+.||.|||.|++.+.|-.|+..++ .-+-||+++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445999999999999999998 999999999998875 46789999999999999999999988 7899999999
Q ss_pred EEcCCCCC
Q 009920 179 KRAVPKEF 186 (522)
Q Consensus 179 ~~a~pk~~ 186 (522)
.+|+.+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99987654
No 128
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=7.5e-08 Score=102.78 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=109.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
..+++|+|-|||.++++++|+++|+.||+|.+|+.-+. .++.+||+|-|..+|++|+ ++..+|.+++|+....
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 46799999999999999999999999999999665443 4689999999999999999 8999999998882211
Q ss_pred CCCccccccc-----ccc-CCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEe
Q 009920 81 VPRDDQNMLN-----RNT-SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154 (522)
Q Consensus 81 ~~k~~~~~~~-----~~~-~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF 154 (522)
..+....... .-. ......+..-....+|+- |++.++..-++.++.-++.++. +.. ..-+-.-||+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~-----~~~~hq~~~~~ 220 (549)
T KOG4660|consen 148 ARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RET-----PLLNHQRFVEF 220 (549)
T ss_pred ccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccc-----cchhhhhhhhh
Confidence 1111111000 000 011111222223344443 8998888878888888887765 222 11112567888
Q ss_pred cCHHHHHHHHHhcCCccCCeEEEEEEcCC
Q 009920 155 DSEEAVDRVLHKTFHELNGKMVEVKRAVP 183 (522)
Q Consensus 155 ~s~e~A~~Al~~~~~~l~Gr~I~V~~a~p 183 (522)
.+..++..++..+...+.++...+++..+
T Consensus 221 ~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 221 ADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred ccccchhhcccCCceecCCCCceEEecCC
Confidence 88887755544333445555545555443
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.52 E-value=2.9e-07 Score=87.55 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=74.7
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009920 101 GPGRTKKIFVGGLASTVTESDFKKYFDQF-GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~f-G~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
.......++|..+|.-+.+.+|..+|.+| |.|..+++-+++.|+.+||||||||+++|.|+-|.+.|| -.|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34556789999999999999999999988 788888998999999999999999999999999999888 6788899999
Q ss_pred EEcCCC
Q 009920 179 KRAVPK 184 (522)
Q Consensus 179 ~~a~pk 184 (522)
.+-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 886554
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.52 E-value=3.5e-07 Score=90.46 Aligned_cols=84 Identities=25% Similarity=0.450 Sum_probs=76.6
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
....+|.|.|||..|+++||+++|++|++++.+.|..|+. +++.|.|-|.|+..++|++|+++++ ..|+|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3457899999999999999999999999999999999876 8899999999999999999999998 8999999999988
Q ss_pred CCCCCC
Q 009920 182 VPKEFS 187 (522)
Q Consensus 182 ~pk~~~ 187 (522)
.+....
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 766554
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.46 E-value=6e-07 Score=88.85 Aligned_cols=83 Identities=25% Similarity=0.424 Sum_probs=73.5
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEee
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
|...++|+|.|||..++++||+|+|++|++++.+.|..++ ++++.|.|=|.|...++|++|+ ++...++++.|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999888888887 5999999999999999999999 888999999999887
Q ss_pred cCCCcc
Q 009920 80 AVPRDD 85 (522)
Q Consensus 80 a~~k~~ 85 (522)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 655433
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.43 E-value=3.7e-07 Score=90.21 Aligned_cols=84 Identities=24% Similarity=0.367 Sum_probs=77.7
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEE
Q 009920 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~ 180 (522)
...+...+||+|+.+.+|.++++.+|+.||.|..|.|++|+.++.+|+|+||+|++.+.+++|+++...+|.++.|+|.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999555999999999999
Q ss_pred cCCC
Q 009920 181 AVPK 184 (522)
Q Consensus 181 a~pk 184 (522)
.+-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8765
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.42 E-value=2e-06 Score=93.61 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=64.9
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEE-EEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVE-AVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~-v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
...|||..||..+++.++.++|.+.-.|++ |.|.+.+ +.+.++.|||+|..++++.+|+ .+++.+..|.|+|....
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 457999999999999999999999888888 5555544 6889999999999999998888 78888889999986543
No 134
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.34 E-value=1.5e-06 Score=88.27 Aligned_cols=81 Identities=26% Similarity=0.422 Sum_probs=73.2
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc
Q 009920 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL 171 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~--------~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l 171 (522)
.+...+.|||.+||.++|.+++.++|.+||.|. .|++.++.. ++.||-|+|.|--+++++-|++.++ ..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 345567799999999999999999999999885 377888876 8999999999999999999999999 899
Q ss_pred CCeEEEEEEcC
Q 009920 172 NGKMVEVKRAV 182 (522)
Q Consensus 172 ~Gr~I~V~~a~ 182 (522)
.|++|+|+.|+
T Consensus 209 rg~~~rVerAk 219 (382)
T KOG1548|consen 209 RGKKLRVERAK 219 (382)
T ss_pred cCcEEEEehhh
Confidence 99999999887
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=2.7e-07 Score=88.35 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=71.0
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
...++|||.|+-..|+||.|.++|-+-|+|.+|.|..+++ ++.| ||||+|+++..+.-|++.++ .+|.++.|.|+.-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4567999999999999999999999999999999998887 5566 99999999999999999999 7999999988875
Q ss_pred C
Q 009920 182 V 182 (522)
Q Consensus 182 ~ 182 (522)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.32 E-value=3.2e-06 Score=72.43 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=63.8
Q ss_pred cEEEECCCCCCCCHHHHHHHHhcc--CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccC----CeEEEE
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRY--GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID----GRTVEA 77 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~--G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~----Gr~I~V 77 (522)
+||+|+|||...|.++|.+++.+. |...-+.+..|-.+..+.|||||-|.++++|.+.. .+++.+. .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999999999763 77777889999888999999999999999999988 6665543 455566
Q ss_pred eecCC
Q 009920 78 KKAVP 82 (522)
Q Consensus 78 ~~a~~ 82 (522)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 66543
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.31 E-value=7.6e-07 Score=88.02 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=75.8
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeec
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a 80 (522)
+.+.+.|||+|+...+|.++|+.+|+.||.|..+.|.+++.++.+|+|+||+|.+.+.+++++ ++...|.++.|+|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 457889999999999999999999999999999999999999899999999999999999999 8999999999999766
Q ss_pred CCC
Q 009920 81 VPR 83 (522)
Q Consensus 81 ~~k 83 (522)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 443
No 138
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.26 E-value=2.3e-06 Score=87.48 Aligned_cols=84 Identities=24% Similarity=0.400 Sum_probs=76.5
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccC
Q 009920 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN 172 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~--------~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~ 172 (522)
.....+|||-.||..+++++|.++|.++++|+ .|.|.+|++|.++|+-|.|+|++..+|++||+... +++.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999885 36788999999999999999999999999999988 8999
Q ss_pred CeEEEEEEcCCCC
Q 009920 173 GKMVEVKRAVPKE 185 (522)
Q Consensus 173 Gr~I~V~~a~pk~ 185 (522)
+.+|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987655
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.24 E-value=8.1e-07 Score=91.22 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=120.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC---CCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEee
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT---GRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKK 79 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~t---g~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~ 79 (522)
....|-|.||.+.+|.++++.+|.-+|+|.++.|+.+..+ ......|||.|.|...+..|. +.++.+-++.|.|..
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3457899999999999999999999999999999885443 345678999999999999998 888888788877765
Q ss_pred cCCCccccc-----------ccc-------------------ccCCCCCCCC----------CCCcceeEecCCCCCCCH
Q 009920 80 AVPRDDQNM-----------LNR-------------------NTSSIHSSPG----------PGRTKKIFVGGLASTVTE 119 (522)
Q Consensus 80 a~~k~~~~~-----------~~~-------------------~~~~~~~~~~----------~~~~~~LfVgnLp~~vte 119 (522)
......... ... .+......|. +....+|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 432221110 000 0000000000 112257999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccC
Q 009920 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELN 172 (522)
Q Consensus 120 edL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~ 172 (522)
.++.+.|+.+|+|....+..... .-+|-|+|......+.|+++++.++.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHHHhcchhhh
Confidence 99999999999998776654332 23778999999999999998875444
No 140
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=1.2e-06 Score=84.96 Aligned_cols=74 Identities=27% Similarity=0.566 Sum_probs=66.0
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
.+|||++||+.+.+++|+++|..||.|.+|.+. .+|+||+|++..+|+.|+..++ ++|.+.++.|++++.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999999886 3589999999999999999988 7899888888888865
Q ss_pred CCC
Q 009920 185 EFS 187 (522)
Q Consensus 185 ~~~ 187 (522)
...
T Consensus 74 ~~~ 76 (216)
T KOG0106|consen 74 RRG 76 (216)
T ss_pred ccc
Confidence 443
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.23 E-value=7.7e-07 Score=86.98 Aligned_cols=81 Identities=27% Similarity=0.574 Sum_probs=74.0
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
.++-+||++.|-.++++|.|-..|.+|-.-...++++++.|++++||+||.|.+++++.+|+ |+...+..|.|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 56788999999999999999999999988888899999999999999999999999999999 9999999998888765
Q ss_pred CCC
Q 009920 81 VPR 83 (522)
Q Consensus 81 ~~k 83 (522)
.-+
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 443
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.21 E-value=1.4e-07 Score=97.50 Aligned_cols=148 Identities=22% Similarity=0.361 Sum_probs=118.1
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCC-eEEEEEeecCCCCCcccEEEEEecCHHHHHHHH---HcccccCCeEEEEeecC
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGE-VVEAVIMRDRATGRARGFGFVVFADPAVAERVI---MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~-V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl---~~~~~i~Gr~I~V~~a~ 81 (522)
.+|||+||.+.++..+|+.+|...-. +..-.+++ .+|+||.+.+...|.+|+ ..+.++.|++++++...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 57999999999999999999976411 11112333 369999999999999999 34568999999998877
Q ss_pred CCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEE-EecCCCCCcceEEEEEecCHHHH
Q 009920 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVV-MYDHNTQRPRGFGFITYDSEEAV 160 (522)
Q Consensus 82 ~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i-~~d~~tg~~rG~aFVeF~s~e~A 160 (522)
++.. +++++-|.|+|..+.++.|..++.+|+.|+.|.. ..|++|- ..-|+|.+.+.+
T Consensus 75 ~kkq------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~ 132 (584)
T KOG2193|consen 75 PKKQ------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQH 132 (584)
T ss_pred hHHH------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHH
Confidence 6543 3456889999999999999999999999998855 3444432 345788999999
Q ss_pred HHHHHhcC-CccCCeEEEEEEcC
Q 009920 161 DRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
+.||.+++ +.|....++|.+--
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCc
Confidence 99999998 79999999988743
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=4.1e-06 Score=89.80 Aligned_cols=71 Identities=20% Similarity=0.377 Sum_probs=63.7
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEE
Q 009920 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVE 177 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (522)
.....+|+|-|||.+|++++|+++|+.||+|+.|+.- ...++.+||+|-|..+|++|++.++ .+|.+++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4567899999999999999999999999999986553 4457899999999999999999999 899999998
No 144
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.08 E-value=2.6e-07 Score=102.73 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=125.6
Q ss_pred CcEEEECCCCCCCCHH-HHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecCC
Q 009920 5 LGKLFIGGISWDTDEE-RLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVP 82 (522)
Q Consensus 5 ~r~LfVgnLP~~~tee-dL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~~ 82 (522)
.+++.+.++-+...++ .++..|+.++.|+.|++......-..--+.++++..+..++.|. .....+..+.+.|..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3556677777776555 57888999999999998763221112228899999999999999 777788888887777766
Q ss_pred CccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHH
Q 009920 83 RDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162 (522)
Q Consensus 83 k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~ 162 (522)
+.......-. +.......++||.||+..+.++||...|..++.|..++|...+++++.||+|+|+|..++++.+
T Consensus 651 ~~~~~~~kvs------~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 651 EEKEENFKVS------PNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred hhhhhccCcC------chHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 5532211100 0011245689999999999999999999999999888888788889999999999999999999
Q ss_pred HHHhcCCccCCeE
Q 009920 163 VLHKTFHELNGKM 175 (522)
Q Consensus 163 Al~~~~~~l~Gr~ 175 (522)
|+...+..+.++.
T Consensus 725 aV~f~d~~~~gK~ 737 (881)
T KOG0128|consen 725 AVAFRDSCFFGKI 737 (881)
T ss_pred hhhhhhhhhhhhh
Confidence 9998885555533
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.06 E-value=2.5e-05 Score=66.89 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=66.4
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccC----CeEEEE
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELN----GKMVEV 178 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~f--G~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~----Gr~I~V 178 (522)
++|.|+|+|...|.++|.+++... +...-+-++.|..+....|||||.|.++++|.+-.+..+ +.+. .|.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999999763 566777888999889999999999999999999888776 5443 577899
Q ss_pred EEcCC
Q 009920 179 KRAVP 183 (522)
Q Consensus 179 ~~a~p 183 (522)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 146
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.90 E-value=0.0001 Score=71.10 Aligned_cols=87 Identities=17% Similarity=0.302 Sum_probs=66.7
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEE-ecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc---CCeE
Q 009920 101 GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVM-YDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL---NGKM 175 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~-~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l---~Gr~ 175 (522)
.+...++|||.+||.++...||..+|..|---+.+.|. .++..+-.+-+|||+|.+..+|++|+.+++ ..| .+..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 34568899999999999999999999998655555443 333333345699999999999999999988 444 3577
Q ss_pred EEEEEcCCCCCC
Q 009920 176 VEVKRAVPKEFS 187 (522)
Q Consensus 176 I~V~~a~pk~~~ 187 (522)
|++++|+...+.
T Consensus 110 LhiElAKSNtK~ 121 (284)
T KOG1457|consen 110 LHIELAKSNTKR 121 (284)
T ss_pred eEeeehhcCccc
Confidence 888888765543
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.82 E-value=3.5e-05 Score=84.56 Aligned_cols=81 Identities=26% Similarity=0.410 Sum_probs=70.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecC---CCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEE
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDR---ATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~---~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V 77 (522)
...++|||.||++.++|+.|...|..||+|..++||--+ +.-+.+-|+||.|-+..+|++|+ +++..+...++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 346899999999999999999999999999999997533 23456789999999999999999 9999999999999
Q ss_pred eecCCC
Q 009920 78 KKAVPR 83 (522)
Q Consensus 78 ~~a~~k 83 (522)
-|.++-
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 887543
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.66 E-value=0.00011 Score=63.97 Aligned_cols=53 Identities=32% Similarity=0.497 Sum_probs=36.1
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
+.|.|.+++.+++-++|+++|++|++|..|.+.+... .|+|.|.+++.|++|+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKAL 54 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHH
Confidence 4689999999999999999999999999999987654 7999999999999999
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.65 E-value=7.1e-05 Score=82.17 Aligned_cols=83 Identities=20% Similarity=0.403 Sum_probs=72.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecC---CCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH---NTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~---~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
..++.|||+||+..++|+.|...|..||+|..|+|+..+ +..+.+-++||.|.+..+|++|++.++ ..+....+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 456789999999999999999999999999999998653 345567799999999999999999998 7889999999
Q ss_pred EEcCCCC
Q 009920 179 KRAVPKE 185 (522)
Q Consensus 179 ~~a~pk~ 185 (522)
-|.++-.
T Consensus 252 gWgk~V~ 258 (877)
T KOG0151|consen 252 GWGKAVP 258 (877)
T ss_pred ccccccc
Confidence 9986443
No 150
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.60 E-value=5.4e-05 Score=78.98 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=58.0
Q ss_pred CCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEec---CCCC--Cc--------ceEEEEEecCHHHHHHHHHhcC
Q 009920 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD---HNTQ--RP--------RGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d---~~tg--~~--------rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
+.+.++|.+.|||.+-.-+.|.+||..+|.|+.|+|++. ++.. .+ +=+|+|||+..++|.+|.++++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 357899999999999999999999999999999999876 3222 11 3479999999999999999997
Q ss_pred C
Q 009920 169 H 169 (522)
Q Consensus 169 ~ 169 (522)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.59 E-value=9.4e-05 Score=64.44 Aligned_cols=69 Identities=25% Similarity=0.415 Sum_probs=44.2
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-C-----ccCCeEEEEE
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H-----ELNGKMVEVK 179 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~-----~l~Gr~I~V~ 179 (522)
..|+|.+++..++.++|+++|++|+.|..|.+.+... .|+|.|.++++|++|++++. . .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3588889999999999999999999999999986544 79999999999999998765 2 4666666655
Q ss_pred E
Q 009920 180 R 180 (522)
Q Consensus 180 ~ 180 (522)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.54 E-value=0.00032 Score=58.06 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=44.5
Q ss_pred cEEEECCCCCCCCHHHH----HHHHhccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEe
Q 009920 6 GKLFIGGISWDTDEERL----KEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAK 78 (522)
Q Consensus 6 r~LfVgnLP~~~teedL----~e~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~ 78 (522)
..|+|.|||.+.+...| +.+++.+| +|.+| . .+-|+|.|.++|.|++|+ |++..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 56999999999887665 55666774 66544 2 247999999999999999 99999999999998
Q ss_pred ecCC
Q 009920 79 KAVP 82 (522)
Q Consensus 79 ~a~~ 82 (522)
....
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 7743
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.54 E-value=7.5e-05 Score=76.64 Aligned_cols=83 Identities=25% Similarity=0.371 Sum_probs=73.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeE--------EEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCC
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVV--------EAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDG 72 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~--------~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~G 72 (522)
.+.-+|||-.||..+++++|.++|.+++.|. .|+|-++++|.+.|+-|.|.|.|+..|+.|+ .+...+++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456899999999999999999999998774 4667889999999999999999999999999 88999999
Q ss_pred eEEEEeecCCCcc
Q 009920 73 RTVEAKKAVPRDD 85 (522)
Q Consensus 73 r~I~V~~a~~k~~ 85 (522)
.+|+|..+..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999987766543
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.35 E-value=0.00012 Score=74.69 Aligned_cols=80 Identities=24% Similarity=0.508 Sum_probs=71.6
Q ss_pred cEEE-ECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHH-cccccCCeEEEEeecCCC
Q 009920 6 GKLF-IGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM-DKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 6 r~Lf-VgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~-~~~~i~Gr~I~V~~a~~k 83 (522)
.++| |.+|+.++++++|+++|..++.|..++++.++.++.+++|++|+|.+...+.++++ ..+.+.++++.+....++
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 4455 99999999999999999999999999999999999999999999999999999994 667888898988877765
Q ss_pred cc
Q 009920 84 DD 85 (522)
Q Consensus 84 ~~ 85 (522)
..
T Consensus 265 ~~ 266 (285)
T KOG4210|consen 265 PK 266 (285)
T ss_pred cc
Confidence 43
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.21 E-value=0.00071 Score=51.54 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=42.6
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
+.|-|.+.|.+..+ +|.++|..||+|+++.+.... -+.+|+|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 56888999877654 566699999999998886333 38999999999999986
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.16 E-value=0.00032 Score=71.49 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=67.5
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEE
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKR 180 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG--~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (522)
+.-++||+||-|.+|++||.+.++..| .+.++++..++.++++||||+|...++.++++.++.+. ++|.|+.-.|.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 445799999999999999999998766 46788889999999999999999999999999999999 799997766643
No 157
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.13 E-value=0.00026 Score=72.21 Aligned_cols=73 Identities=16% Similarity=0.465 Sum_probs=63.5
Q ss_pred EEEECCCCCCCCHHHHHHHHhccC--CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEee
Q 009920 7 KLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKK 79 (522)
Q Consensus 7 ~LfVgnLP~~~teedL~e~F~~~G--~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~ 79 (522)
.+||+||-|.+|++||.+.+...| .+.++++..++.++.+||||.|...+.+..++.+ +-.++|+|+.-.|..
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 479999999999999999998765 6788899999999999999999999999999888 778888887655543
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.10 E-value=0.0017 Score=53.91 Aligned_cols=67 Identities=16% Similarity=0.332 Sum_probs=45.8
Q ss_pred ceeEecCCCCCCCHH----HHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEE
Q 009920 106 KKIFVGGLASTVTES----DFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVK 179 (522)
Q Consensus 106 ~~LfVgnLp~~vtee----dL~~~F~~fG-~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (522)
..|+|.|||.+.+.. .|+++++.+| .|.+| . .+.|+|.|.+++.|++|++.|+ .++-|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999998875 4667777785 45443 1 2379999999999999999988 89999999999
Q ss_pred EcC
Q 009920 180 RAV 182 (522)
Q Consensus 180 ~a~ 182 (522)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.05 E-value=0.0012 Score=50.27 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=41.3
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHH
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al 164 (522)
+.|-|.+.+.+..+. +.++|..||+|+++.+...++ ..+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 457788888776655 555888999999988873333 8999999999999986
No 160
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.97 E-value=0.0056 Score=69.67 Aligned_cols=18 Identities=44% Similarity=0.765 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 009920 237 ATGRGGISPFGGAGYGVG 254 (522)
Q Consensus 237 gGGrGG~gg~gggGyG~g 254 (522)
.+.|.|...+.++|||.+
T Consensus 1180 SgyRRGgssysgGGYGgg 1197 (1282)
T KOG0921|consen 1180 SGYRRGGSSYSGGGYGGG 1197 (1282)
T ss_pred cccccCCCCCCCCCcCCC
Confidence 344444444444455544
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.93 E-value=0.00055 Score=67.45 Aligned_cols=71 Identities=28% Similarity=0.476 Sum_probs=59.9
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC--------CCccc----EEEEEecCHHHHHHHH--Hcccc
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT--------GRARG----FGFVVFADPAVAERVI--MDKHM 69 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~t--------g~srG----~aFVeF~~~e~A~kAl--~~~~~ 69 (522)
....|||.+||+.++...|+++|+.||+|-.|.|.+...+ +.++. -+.|+|.++..|+++. +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999877655 23333 2779999999999987 89999
Q ss_pred cCCeE
Q 009920 70 IDGRT 74 (522)
Q Consensus 70 i~Gr~ 74 (522)
|.+++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88864
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.93 E-value=0.0025 Score=55.02 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=53.2
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEE-EeecC------CCCCcccEEEEEecCHHHHHHHH-HcccccCCe-
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAV-IMRDR------ATGRARGFGFVVFADPAVAERVI-MDKHMIDGR- 73 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~-i~~d~------~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr- 73 (522)
.+++-|.|=+.|+. ....|.++|++||+|.+.. +.++. .......+-.|+|.++.+|++|| .|+..|.+.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 45677888899988 6678999999999998775 10100 00123458999999999999999 899999875
Q ss_pred EEEEeecCC
Q 009920 74 TVEAKKAVP 82 (522)
Q Consensus 74 ~I~V~~a~~ 82 (522)
.+-|++.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 444666643
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.83 E-value=0.0021 Score=65.46 Aligned_cols=82 Identities=22% Similarity=0.458 Sum_probs=63.8
Q ss_pred CCcceeEecCCCCCCCHHH------HHHHHhhcCCeeEEEEEecCCCCCc-ceEE--EEEecCHHHHHHHHHhcC-CccC
Q 009920 103 GRTKKIFVGGLASTVTESD------FKKYFDQFGTITDVVVMYDHNTQRP-RGFG--FITYDSEEAVDRVLHKTF-HELN 172 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteed------L~~~F~~fG~I~~v~i~~d~~tg~~-rG~a--FVeF~s~e~A~~Al~~~~-~~l~ 172 (522)
....-+||-+||..+..|+ -.++|.+||.|++|.|-+......+ .+.+ +|+|.+.|+|.+||...+ ..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3445689999998887776 3578999999999888765422211 1223 999999999999999999 8999
Q ss_pred CeEEEEEEcCCC
Q 009920 173 GKMVEVKRAVPK 184 (522)
Q Consensus 173 Gr~I~V~~a~pk 184 (522)
||.|+..+-..|
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999887654
No 164
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.81 E-value=0.022 Score=65.07 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=4.6
Q ss_pred CcccEEEEEecC
Q 009920 45 RARGFGFVVFAD 56 (522)
Q Consensus 45 ~srG~aFVeF~~ 56 (522)
+.++|+--.|++
T Consensus 900 ~q~~~~g~kfsd 911 (1282)
T KOG0921|consen 900 TQRKFAGNKFSD 911 (1282)
T ss_pred chhhcccccccc
Confidence 333343333433
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.61 E-value=0.0018 Score=67.84 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=53.4
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeec---CCCCC----------cccEEEEEecCHHHHHHHH
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRD---RATGR----------ARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d---~~tg~----------srG~aFVeF~~~e~A~kAl 64 (522)
..+++|.+-|||.+-.-+.|.++|..+|.|..|+|++- +++.+ .+-+|+|+|.+.+.|+||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 46899999999999888999999999999999999775 33221 2567999999999999998
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.58 E-value=0.0068 Score=52.35 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=52.3
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEE-EEecC------CCCCcceEEEEEecCHHHHHHHHHhcCCccCCe-E
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVV-VMYDH------NTQRPRGFGFITYDSEEAVDRVLHKTFHELNGK-M 175 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~-i~~d~------~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr-~ 175 (522)
...-|.|-+.|+. ....|-+.|++||+|.+.. +.++. ..........|+|+++.+|++||+++...|.|. +
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456888899987 5567888999999997764 11100 001112388999999999999999999889884 6
Q ss_pred EEEEEcCC
Q 009920 176 VEVKRAVP 183 (522)
Q Consensus 176 I~V~~a~p 183 (522)
|-|.+.++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 66777743
No 167
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0082 Score=64.54 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=57.0
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHh-ccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFS-RYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~-~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
..+||||+.||.-++.+||..+|+ -||-|.-+-|=.|++-+-+||-+=|.|.+...-.+||
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 468999999999999999999999 5999999999999777889999999999999999998
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.32 E-value=0.0076 Score=61.52 Aligned_cols=77 Identities=22% Similarity=0.531 Sum_probs=59.0
Q ss_pred EEEECCCCCCCCHHHH------HHHHhccCCeEEEEEeecCCC-CCcccEE--EEEecCHHHHHHHH--HcccccCCeEE
Q 009920 7 KLFIGGISWDTDEERL------KEYFSRYGEVVEAVIMRDRAT-GRARGFG--FVVFADPAVAERVI--MDKHMIDGRTV 75 (522)
Q Consensus 7 ~LfVgnLP~~~teedL------~e~F~~~G~V~~v~i~~d~~t-g~srG~a--FVeF~~~e~A~kAl--~~~~~i~Gr~I 75 (522)
-|||-+||+.+..|++ .++|.+||+|..|.|-+.... ....+.+ ||.|.++|+|.+|| .++..++||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4689999999776662 489999999988777554211 1122233 99999999999999 88999999999
Q ss_pred EEeecCCC
Q 009920 76 EAKKAVPR 83 (522)
Q Consensus 76 ~V~~a~~k 83 (522)
++.+-..+
T Consensus 196 katYGTTK 203 (480)
T COG5175 196 KATYGTTK 203 (480)
T ss_pred eeecCchH
Confidence 98776554
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.30 E-value=0.009 Score=59.11 Aligned_cols=97 Identities=18% Similarity=0.346 Sum_probs=78.8
Q ss_pred HcccccCCeEEEEeecCCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC
Q 009920 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQ 144 (522)
Q Consensus 65 ~~~~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg 144 (522)
++.....++.++|.++.. +.|+|.||+.-++-+.|++.|+.||+|....++.|.. .
T Consensus 14 Ld~~~~~~~~lr~rfa~~-----------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~ 69 (275)
T KOG0115|consen 14 LDGRFPKGRSLRVRFAMH-----------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-G 69 (275)
T ss_pred cCCCCCCCCceEEEeecc-----------------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-c
Confidence 788888999999988753 4699999999999999999999999999888877754 6
Q ss_pred CcceEEEEEecCHHHHHHHHHhcC-C----ccCCeEEEEEEcCCCC
Q 009920 145 RPRGFGFITYDSEEAVDRVLHKTF-H----ELNGKMVEVKRAVPKE 185 (522)
Q Consensus 145 ~~rG~aFVeF~s~e~A~~Al~~~~-~----~l~Gr~I~V~~a~pk~ 185 (522)
++.+-.+|+|...-.+.+|+.... . ...++++-|.......
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq~~ 115 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQPD 115 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhccC
Confidence 778899999999988888888774 2 4555666666544333
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.0024 Score=69.01 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=58.0
Q ss_pred CcEEEECCCCCC--CCHH----HHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccC-CeEE
Q 009920 5 LGKLFIGGISWD--TDEE----RLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID-GRTV 75 (522)
Q Consensus 5 ~r~LfVgnLP~~--~tee----dL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~-Gr~I 75 (522)
...|+|-|+|.- +..+ -|.++|+++|+|+++.+..+.+ +..+||.|++|++..+|++|+ +|++.|+ .++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 456899999964 2222 3457899999999999998877 459999999999999999999 7777765 4455
Q ss_pred EEeec
Q 009920 76 EAKKA 80 (522)
Q Consensus 76 ~V~~a 80 (522)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 55443
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.13 E-value=0.028 Score=44.21 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=46.4
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhc---CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhc
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQF---GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~f---G~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~ 167 (522)
+..+|+|.++. +++.+||+.+|..| .....|..+-|. .|-|.|.+++.|.+||.++
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45689999995 58889999999998 234678888775 5899999999999999764
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.09 E-value=0.024 Score=52.07 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCCC
Q 009920 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184 (522)
Q Consensus 121 dL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~pk 184 (522)
+|-+.|.+||+|.-|+++.+ .-+|+|.+-++|.+|+++...+++|+.|+|+...|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 67778888999998888755 469999999999999999999999999999998765
No 173
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.88 E-value=0.015 Score=62.83 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=58.8
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHh--hcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC---CccCCeEEE
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFD--QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVE 177 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~--~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~---~~l~Gr~I~ 177 (522)
.+.+.|.|+.||+++-+|+|+.+|+ .|-++.+|.+-.+.. =||+|+++.||++|.+.+. ++|.||+|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4567788999999999999999995 478888888876543 5999999999999998876 588898885
Q ss_pred EEE
Q 009920 178 VKR 180 (522)
Q Consensus 178 V~~ 180 (522)
...
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 443
No 174
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.79 E-value=0.17 Score=51.20 Aligned_cols=164 Identities=10% Similarity=0.144 Sum_probs=102.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecC-------CCCCcccEEEEEecCHHHHHHHH--------Hccc
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDR-------ATGRARGFGFVVFADPAVAERVI--------MDKH 68 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~-------~tg~srG~aFVeF~~~e~A~kAl--------~~~~ 68 (522)
..|.|.+.||..+++-.++.+.|.+|++|++|.++.+. +.-+......+.|-+.+.+-... .=++
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999876 11234467889999999876554 1234
Q ss_pred ccCCeEEEEeecCCCcccccc-cccc--------CCCC-CCCCCCCcceeEecCCCCCC-CHHHHHHHHh---hcC----
Q 009920 69 MIDGRTVEAKKAVPRDDQNML-NRNT--------SSIH-SSPGPGRTKKIFVGGLASTV-TESDFKKYFD---QFG---- 130 (522)
Q Consensus 69 ~i~Gr~I~V~~a~~k~~~~~~-~~~~--------~~~~-~~~~~~~~~~LfVgnLp~~v-teedL~~~F~---~fG---- 130 (522)
.++-..|.+....-+...... +... ...+ .......++.|.|.=- ..+ +++-+.+.+. .-.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 556666665543211111000 0000 0111 1223456777877544 444 4443444332 111
Q ss_pred CeeEEEEEecC--CCCCcceEEEEEecCHHHHHHHHHhcC
Q 009920 131 TITDVVVMYDH--NTQRPRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 131 ~I~~v~i~~d~--~tg~~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
.|+.|.|+... ...-++-||.++|-+...|.+.++.+.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 46777777543 233467799999999888888887655
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.71 E-value=0.0093 Score=58.98 Aligned_cols=72 Identities=13% Similarity=0.313 Sum_probs=59.0
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC--------CCc----ceEEEEEecCHHHHHHHHHhcC-Cc
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT--------QRP----RGFGFITYDSEEAVDRVLHKTF-HE 170 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~t--------g~~----rG~aFVeF~s~e~A~~Al~~~~-~~ 170 (522)
.+..||+.+||+.+....|+++|..||+|-+|-+.....+ +.. ---+.|||.+...|+++.+.++ ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999888765543 111 1246899999999999988888 78
Q ss_pred cCCeE
Q 009920 171 LNGKM 175 (522)
Q Consensus 171 l~Gr~ 175 (522)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88764
No 176
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.64 E-value=0.011 Score=62.99 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=58.8
Q ss_pred eeEecCCCCCC-CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCCC
Q 009920 107 KIFVGGLASTV-TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184 (522)
Q Consensus 107 ~LfVgnLp~~v-teedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~pk 184 (522)
.|-+.-.|+.+ |.++|...|.+||+|..|.|-.... .|.|+|.+..+|-+|.......|++|.|+|.|-.|-
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 45555566655 4589999999999999998865533 699999999999888777778999999999998873
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.63 E-value=0.026 Score=56.82 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=51.1
Q ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCccc-EEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 19 EERLKEYFSRYGEVVEAVIMRDRATGRARG-FGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 19 eedL~e~F~~~G~V~~v~i~~d~~tg~srG-~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
|+++++.+++||.|..|.|...+......- --||+|...++|.+|+ +|+..+.||.+....-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 568899999999999999877654332222 2799999999999999 99999999999876543
No 178
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.049 Score=59.25 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=60.2
Q ss_pred CCcceeEecCCCCCCC------HHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc-CCe
Q 009920 103 GRTKKIFVGGLASTVT------ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL-NGK 174 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vt------eedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l-~Gr 174 (522)
.-...|+|-++|.--. ..-|.++|+++|+|+.+.++.+.+++ .+||.|++|.+..+|+.|++.++ +.| ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3456788999985322 23577889999999999999998855 89999999999999999999888 443 445
Q ss_pred EEEEEE
Q 009920 175 MVEVKR 180 (522)
Q Consensus 175 ~I~V~~ 180 (522)
+..|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 566654
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.52 E-value=0.043 Score=45.60 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=43.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
.+.+..+|. .|.++...||.++|+.||.| .|..+.|. .|||...+++.|+.|+..+.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 455566666 99999999999999999987 56666553 69999999999999887765
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.49 E-value=0.036 Score=55.83 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcCCeeEEEEEecCCCCCcc-eEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009920 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPR-GFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 119 eedL~~~F~~fG~I~~v~i~~d~~tg~~r-G~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
|+++++.+++||.|..|.|..++...... --.||+|+..++|.+|+-.++ ..|.||.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 46788999999999999998775432221 247999999999999999999 89999999877654
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.36 E-value=0.0085 Score=59.31 Aligned_cols=60 Identities=22% Similarity=0.370 Sum_probs=48.9
Q ss_pred HHHHHHHh-ccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 20 ERLKEYFS-RYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 20 edL~e~F~-~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
+||...|+ +||+|++++|..+.. -..+|-+||.|..+|+|++|+ +++..+.+++|.++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444445 899999998877653 457889999999999999999 9999999999988754
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.34 E-value=0.047 Score=50.15 Aligned_cols=55 Identities=31% Similarity=0.494 Sum_probs=44.4
Q ss_pred HHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecCCC
Q 009920 21 RLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 21 dL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~~k 83 (522)
+|.+.|+.||+|.-++++-+ .-+|+|.+-+.|-+|+ ++..+|.++.|+|+...|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 67788888999987777665 4699999999999999 9999999999999877654
No 183
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.26 E-value=0.024 Score=59.10 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=63.5
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecC---CCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009920 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH---NTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~---~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
...|.|.||.+.+|.++++.+|...|.|.++.++... ......-.|||.|.+...+..|..+.+..+-++.|.|-..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 3479999999999999999999999999999987632 1222344899999999999999999997777777776554
Q ss_pred C
Q 009920 182 V 182 (522)
Q Consensus 182 ~ 182 (522)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.24 E-value=0.0092 Score=59.08 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=49.6
Q ss_pred HHHHHHHh-hcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcC
Q 009920 120 SDFKKYFD-QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAV 182 (522)
Q Consensus 120 edL~~~F~-~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (522)
|||...|+ +||+|+++.|..+.. ...+|-++|.|..+|+|++|++.++ ..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 899999997776543 4557889999999999999999999 89999999887753
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.19 E-value=0.012 Score=62.56 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=66.6
Q ss_pred CCCCCcEEEECCCCCCC-CHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEe
Q 009920 1 MESDLGKLFIGGISWDT-DEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~-teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~ 78 (522)
|+.|.+.|-+.-+|... |-++|...|.+||+|++|.|-...+ -|.|+|.+..+|-+|. .+...|++|.|+|.
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEE
Confidence 45678888888888884 6778999999999999999866533 6999999999996665 88999999999999
Q ss_pred ecCCCccc
Q 009920 79 KAVPRDDQ 86 (522)
Q Consensus 79 ~a~~k~~~ 86 (522)
|-.+....
T Consensus 442 whnps~~t 449 (526)
T KOG2135|consen 442 WHNPSPVT 449 (526)
T ss_pred EecCCccc
Confidence 98875433
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.98 E-value=0.037 Score=60.02 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=58.2
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhc--cCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH----HcccccCCeEEEE
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSR--YGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI----MDKHMIDGRTVEA 77 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~--~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl----~~~~~i~Gr~I~V 77 (522)
+.|.|+|+-||..+.+|+|+.+|+. |-++.+|.+-.+.. =||+|++.+||++|. .+.++|.++.|.+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 5688999999999999999999964 78899999877643 599999999999997 5667888988866
Q ss_pred ee
Q 009920 78 KK 79 (522)
Q Consensus 78 ~~ 79 (522)
..
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 44
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.65 E-value=0.14 Score=40.36 Aligned_cols=50 Identities=30% Similarity=0.518 Sum_probs=43.0
Q ss_pred cEEEECCCCCCCCHHHHHHHHhcc----CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRY----GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~----G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
.+|+|++|. +++.++|+.+|..| .+ ..|..+-|. -|-|.|.+++.|.+||
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHH
Confidence 579999994 68999999999998 54 468888774 5899999999999998
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.65 E-value=0.19 Score=45.89 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=60.1
Q ss_pred CCCCcceeEecCCCCCCC-HHHHHHH---HhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEE
Q 009920 101 GPGRTKKIFVGGLASTVT-ESDFKKY---FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMV 176 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vt-eedL~~~---F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I 176 (522)
...+..+|.|+=|..++. .+||+.+ ++.||+|..|... ++. .|.|.|.+..+|.+|+.+......|.++
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Grq--savVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQ--SAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCc--eEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 456778999988887764 3555554 4679999999886 322 7999999999999999999988899999
Q ss_pred EEEEcC
Q 009920 177 EVKRAV 182 (522)
Q Consensus 177 ~V~~a~ 182 (522)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 998864
No 189
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.35 E-value=0.04 Score=46.41 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=46.1
Q ss_pred EEEEecCHHHHHHHH-Hcc--cccCCeEEEEeecCCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHH
Q 009920 50 GFVVFADPAVAERVI-MDK--HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126 (522)
Q Consensus 50 aFVeF~~~e~A~kAl-~~~--~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F 126 (522)
|.|+|.+++.|++.+ +.. ..++.+.+.|+...-.......- ........++|.|.+||..+.|++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~-------qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF-------QVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE-------EEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 689999999999999 444 35566776665432211110000 00112456789999999999999998765
Q ss_pred h
Q 009920 127 D 127 (522)
Q Consensus 127 ~ 127 (522)
+
T Consensus 74 e 74 (88)
T PF07292_consen 74 E 74 (88)
T ss_pred E
Confidence 4
No 190
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.29 E-value=0.036 Score=58.31 Aligned_cols=76 Identities=25% Similarity=0.445 Sum_probs=60.5
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC--CccCCeEEEEEEcCC
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF--HELNGKMVEVKRAVP 183 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~--~~l~Gr~I~V~~a~p 183 (522)
.+|||+||.+.++.+||+.+|...-.-..-.++.. .||+||.+.++.-|.+|++.++ .++.|++++|....|
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 47999999999999999999976411111122222 3699999999999999999998 589999999999988
Q ss_pred CCCC
Q 009920 184 KEFS 187 (522)
Q Consensus 184 k~~~ 187 (522)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 7653
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.20 E-value=0.16 Score=42.26 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=39.2
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
.+..+|. .|.++...||.++|+.||.|. |..+.|- -|||...+.+.|+.|+
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~ 59 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVM 59 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHH
Confidence 4555666 999999999999999999984 6666652 7999999999999988
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.97 E-value=0.068 Score=50.91 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhc-cCCe---EEEEEeec--CCCCCcccEEEEEecCHHHHHHHH--Hccccc
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSR-YGEV---VEAVIMRD--RATGRARGFGFVVFADPAVAERVI--MDKHMI 70 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~-~G~V---~~v~i~~d--~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i 70 (522)
.+..+|.|+.||+.+||+++.+.++. +++. ..+.-... ......-.-|||.|.+.+++...+ .+++.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 56789999999999999999997776 5554 22321111 111112345999999999988877 555544
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.45 E-value=0.066 Score=53.16 Aligned_cols=74 Identities=23% Similarity=0.373 Sum_probs=60.0
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--H--cc--cccCCeEEEEee
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--M--DK--HMIDGRTVEAKK 79 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~--~~--~~i~Gr~I~V~~ 79 (522)
..|+|.||+.-+..|.|++.|+.||+|+..+++.|. .++..+-++|+|..+-.|.+|+ . .. -++.++++.|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999988887775 4889999999999999999988 2 11 234455555544
Q ss_pred c
Q 009920 80 A 80 (522)
Q Consensus 80 a 80 (522)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 194
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.18 E-value=0.12 Score=56.59 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=61.8
Q ss_pred CCCCcceeEecCCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-C---ccCCeE
Q 009920 101 GPGRTKKIFVGGLASTVTESDFKKYFD-QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H---ELNGKM 175 (522)
Q Consensus 101 ~~~~~~~LfVgnLp~~vteedL~~~F~-~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~---~l~Gr~ 175 (522)
....++.|+|.||-..+|.-+|+.++. ..+.|++. .+|+. |-.|||.|.+.++|.+.+.+|+ . .-+.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445678999999999999999999998 56667766 44443 4479999999999999998887 3 456788
Q ss_pred EEEEEcCCC
Q 009920 176 VEVKRAVPK 184 (522)
Q Consensus 176 I~V~~a~pk 184 (522)
|.|.+....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888877643
No 195
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.96 E-value=0.26 Score=56.44 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=62.9
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccC--CeEEEEee
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID--GRTVEAKK 79 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~--Gr~I~V~~ 79 (522)
..++|||++|+..+....|...|..||+|..|.+..... ||+|++++.+.|+.|+ +....|. .+.|.|..
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~------yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP------YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc------ceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 468899999999999999999999999999988866543 9999999999999999 6666664 36677877
Q ss_pred cCCCc
Q 009920 80 AVPRD 84 (522)
Q Consensus 80 a~~k~ 84 (522)
+.+..
T Consensus 528 a~~~~ 532 (975)
T KOG0112|consen 528 ASPPG 532 (975)
T ss_pred ccCCC
Confidence 76543
No 196
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.70 E-value=0.59 Score=47.57 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=53.9
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeE-EEEeecCCC
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRT-VEAKKAVPR 83 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~-I~V~~a~~k 83 (522)
.=|-|-++|+. .-.-|..+|++||+|++.+...+- -+-+|.|.+.-+|+||| ++++.|++.. |-|+....+
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 34556677765 344678899999999876665433 38999999999999999 9999998754 456665554
Q ss_pred cc
Q 009920 84 DD 85 (522)
Q Consensus 84 ~~ 85 (522)
..
T Consensus 271 sv 272 (350)
T KOG4285|consen 271 SV 272 (350)
T ss_pred HH
Confidence 43
No 197
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=0.78 Score=50.42 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=72.8
Q ss_pred CCCCcEEEECCCCCC-CCHHHHHHHHhcc----CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHcccccCCeEEE
Q 009920 2 ESDLGKLFIGGISWD-TDEERLKEYFSRY----GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVE 76 (522)
Q Consensus 2 e~d~r~LfVgnLP~~-~teedL~e~F~~~----G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~I~ 76 (522)
+..+++|-|-||.|+ +..++|.-+|..| |.|.+|.|.+..- | +.-|...+++|-.++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-G-----------------keRM~eEeV~GP~~e 232 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-G-----------------KERMKEEEVHGPPKE 232 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-h-----------------HHHhhhhcccCChhh
Confidence 456899999999999 8999999999887 5788998876531 1 111344445554444
Q ss_pred EeecCCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC
Q 009920 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156 (522)
Q Consensus 77 V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s 156 (522)
+........... .....-++-.++-+.+| .+..++.. ||.|+|++
T Consensus 233 l~~~~e~~~~s~------------------------sD~ee~~~~~~~kLR~Y-q~~rLkYY----------yAVvecDs 277 (650)
T KOG2318|consen 233 LFKPVEEYKESE------------------------SDDEEEEDVDREKLRQY-QLNRLKYY----------YAVVECDS 277 (650)
T ss_pred hccccccCcccc------------------------cchhhhhhHHHHHHHHH-HhhhheeE----------EEEEEecC
Confidence 322211110000 01111111223333444 23333333 89999999
Q ss_pred HHHHHHHHHhcC-CccCCeE
Q 009920 157 EEAVDRVLHKTF-HELNGKM 175 (522)
Q Consensus 157 ~e~A~~Al~~~~-~~l~Gr~ 175 (522)
.+.|.++.+.++ .++...-
T Consensus 278 i~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 278 IETAKAVYEECDGIEFESSA 297 (650)
T ss_pred chHHHHHHHhcCcceecccc
Confidence 999999999998 6666543
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.29 E-value=0.92 Score=41.58 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=53.6
Q ss_pred CCCCcEEEECCCCCCCC-HHH---HHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEE
Q 009920 2 ESDLGKLFIGGISWDTD-EER---LKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVE 76 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~t-eed---L~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~ 76 (522)
|....+|.|+=|..++. .+| |...++.||+|.+|.++-. --|.|+|+|...|-+|+ .-.....+..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 45667888987777743 334 4456678999998877543 26999999999999999 333466777787
Q ss_pred EeecCC
Q 009920 77 AKKAVP 82 (522)
Q Consensus 77 V~~a~~ 82 (522)
+.|.+.
T Consensus 156 CsWqqr 161 (166)
T PF15023_consen 156 CSWQQR 161 (166)
T ss_pred eecccc
Confidence 777543
No 199
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.27 E-value=1.6 Score=44.46 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=54.1
Q ss_pred eEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCe-EEEEEEcCCCCC
Q 009920 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGK-MVEVKRAVPKEF 186 (522)
Q Consensus 108 LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr-~I~V~~a~pk~~ 186 (522)
|-|-++|... -.-|-.+|++||.|++...... + -+-+|.|.++-+|+|||.++...|++. .|-|+....|..
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHH
Confidence 4455666543 3567789999999987665522 2 288999999999999999999888875 567777666654
Q ss_pred C
Q 009920 187 S 187 (522)
Q Consensus 187 ~ 187 (522)
.
T Consensus 273 i 273 (350)
T KOG4285|consen 273 I 273 (350)
T ss_pred h
Confidence 3
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.25 E-value=0.21 Score=47.59 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=45.9
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhh-cCCe---eEEEEEecC--CCCCcceEEEEEecCHHHHHHHHHhcC-CccCC---
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQ-FGTI---TDVVVMYDH--NTQRPRGFGFITYDSEEAVDRVLHKTF-HELNG--- 173 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~-fG~I---~~v~i~~d~--~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~G--- 173 (522)
...+|.|++||+.+||+++.+.+.. ++.. ..+.-.... .....-.-|+|.|.+.+++..-++..+ +.+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4569999999999999999987766 5544 233311221 111123468999999999888888776 33221
Q ss_pred --eEEEEEEcC
Q 009920 174 --KMVEVKRAV 182 (522)
Q Consensus 174 --r~I~V~~a~ 182 (522)
.+..|++|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 345666654
No 201
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.21 E-value=0.17 Score=56.13 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=78.1
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeecC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKAV 81 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a~ 81 (522)
..-+|||+||...+.++-++.++..+|-|.+++... |+|++|..+..+.+|+ ++...+++.++.++.-.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 456799999999999999999999999997776654 9999999999988888 77788888888776531
Q ss_pred CCccccc--cccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhc
Q 009920 82 PRDDQNM--LNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQF 129 (522)
Q Consensus 82 ~k~~~~~--~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~f 129 (522)
..-.... ........+.-.+....+-++|.++|....+...+..+.--
T Consensus 110 q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is 159 (668)
T KOG2253|consen 110 QTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQIS 159 (668)
T ss_pred hhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhcc
Confidence 1110000 00011111111122224567778888777766666665443
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.90 E-value=4.1 Score=35.83 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=46.8
Q ss_pred CcceeEecCCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC
Q 009920 104 RTKKIFVGGLASTVTESDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 104 ~~~~LfVgnLp~~vteedL~~~F~~fG-~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
.+..+.+...|..++.++|..+.+.+- .|..++|++|.. ..+-.++++|.+.++|++-.+..|
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhC
Confidence 344555556666677778877777764 477889998854 345689999999999999888776
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.02 E-value=1.4 Score=35.12 Aligned_cols=53 Identities=28% Similarity=0.437 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEE
Q 009920 16 DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (522)
Q Consensus 16 ~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V 77 (522)
.++-++|+..+.+|.- .+|+.++. || ||.|.+.++|+++. .+...+...+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC-----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3788999999999964 34556653 55 89999999999999 5566665555543
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.90 E-value=1.2 Score=47.68 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=54.5
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhcc-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccC
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSRY-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID 71 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~ 71 (522)
.++.|.|--+|..++-.||..|...+ -.|.+++|+||.. -.+=...|+|++.++|.... .|+..+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 47889999999999999999999875 5689999999643 23445899999999999998 6666554
No 205
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=88.08 E-value=0.39 Score=52.85 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=55.9
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHh-ccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--Hccccc---CCeEEE
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFS-RYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI---DGRTVE 76 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~-~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i---~Gr~I~ 76 (522)
+-++.|+|.||=.-.|.-+|++++. ..+.|++.+|-+ .|-.|||.|.+.++|.+.. |++... +.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3468899999999999999999999 477888774422 3458999999999998877 666544 456666
Q ss_pred Eeec
Q 009920 77 AKKA 80 (522)
Q Consensus 77 V~~a 80 (522)
+.+.
T Consensus 516 adf~ 519 (718)
T KOG2416|consen 516 ADFV 519 (718)
T ss_pred eeec
Confidence 6554
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.73 E-value=0.26 Score=50.85 Aligned_cols=80 Identities=24% Similarity=0.471 Sum_probs=58.8
Q ss_pred cEEEECCCCCCCCHHH-HH--HHHhccCCeEEEEEeecCC--CCC-cccEEEEEecCHHHHHHHH--HcccccCCeEEEE
Q 009920 6 GKLFIGGISWDTDEER-LK--EYFSRYGEVVEAVIMRDRA--TGR-ARGFGFVVFADPAVAERVI--MDKHMIDGRTVEA 77 (522)
Q Consensus 6 r~LfVgnLP~~~teed-L~--e~F~~~G~V~~v~i~~d~~--tg~-srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V 77 (522)
+-+||-+||.+...++ |+ +.|.+||.|..|.+.++.- ... ...-++|.|...|+|..|| .++..++++.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4568888998854444 43 6888999999888877652 111 1223899999999999999 8888899998877
Q ss_pred eecCCCcc
Q 009920 78 KKAVPRDD 85 (522)
Q Consensus 78 ~~a~~k~~ 85 (522)
.....+..
T Consensus 158 ~~gttkyc 165 (327)
T KOG2068|consen 158 SLGTTKYC 165 (327)
T ss_pred hhCCCcch
Confidence 76665543
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.32 E-value=0.18 Score=51.91 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=62.9
Q ss_pred CCcceeEecCCCCCCCHHHHH---HHHhhcCCeeEEEEEecCCCC---CcceEEEEEecCHHHHHHHHHhcC-CccCCeE
Q 009920 103 GRTKKIFVGGLASTVTESDFK---KYFDQFGTITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDRVLHKTF-HELNGKM 175 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~---~~F~~fG~I~~v~i~~d~~tg---~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~ 175 (522)
.....+||-.|+..+.++++- +.|.+||.|..|.+..++... -.-..++|+|..+|+|..||...+ ..++++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 445678898999877665543 467788999999888776211 122347999999999999999888 7888888
Q ss_pred EEEEEcCCCCC
Q 009920 176 VEVKRAVPKEF 186 (522)
Q Consensus 176 I~V~~a~pk~~ 186 (522)
|+..+..++.-
T Consensus 155 lka~~gttkyc 165 (327)
T KOG2068|consen 155 LKASLGTTKYC 165 (327)
T ss_pred hHHhhCCCcch
Confidence 88887776643
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.27 E-value=3.8 Score=36.01 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=45.0
Q ss_pred cEEEECCCCC-CCCHHHHHHHHhcc-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccC
Q 009920 6 GKLFIGGISW-DTDEERLKEYFSRY-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMID 71 (522)
Q Consensus 6 r~LfVgnLP~-~~teedL~e~F~~~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~ 71 (522)
.+|.|--+|. .++.++|..+.+.+ -.|..++|+++.. .++=.+.++|.+.++|++.. .|++.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 4444444444 46667777777765 4577888988743 36667999999999999998 6665543
No 209
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=87.21 E-value=6 Score=41.19 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=5.6
Q ss_pred CCHHHHHHHHhh
Q 009920 117 VTESDFKKYFDQ 128 (522)
Q Consensus 117 vteedL~~~F~~ 128 (522)
.++++|+++++.
T Consensus 198 a~w~~iE~~~~~ 209 (465)
T KOG3973|consen 198 ATWPEIEKQCES 209 (465)
T ss_pred hhHHHHHHHHHH
Confidence 344555544443
No 210
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.63 E-value=2.1 Score=41.14 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=43.9
Q ss_pred CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC---CccCCeEEEEEEcCCC
Q 009920 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF---HELNGKMVEVKRAVPK 184 (522)
Q Consensus 118 teedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~---~~l~Gr~I~V~~a~pk 184 (522)
..+.|+++|..+..+..+.+++.- .-..|.|.+.++|++|.+.++ ..+.++.|+|.++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999998888777432 258999999999999999987 4799999999988543
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.46 E-value=3.9 Score=33.02 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=32.6
Q ss_pred CCHHHHHHHHhccC-----CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 17 TDEERLKEYFSRYG-----EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 17 ~teedL~e~F~~~G-----~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
++..+|..++.... .|-.|+|..+ |+||+-... .|++++ +++..+.+++|.|+.|
T Consensus 13 ~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 13 LTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp --HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 88999999998764 3666777654 899988765 566666 8899999999999865
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.54 E-value=0.94 Score=41.22 Aligned_cols=110 Identities=12% Similarity=0.016 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHhc-cCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-HcccccCCeEEEEeecCCCcccccccccc
Q 009920 16 DTDEERLKEYFSR-YGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNT 93 (522)
Q Consensus 16 ~~teedL~e~F~~-~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~~i~Gr~I~V~~a~~k~~~~~~~~~~ 93 (522)
+.+-+.|.+.+.+ ......+.+..-. .++..++|.+++++++++ .....+++..+.++.-.+........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~--- 99 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVK--- 99 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccc---
Confidence 3566677776655 2333334443321 258999999999999999 66667778778777665443221110
Q ss_pred CCCCCCCCCCCcceeEecCCCCC-CCHHHHHHHHhhcCCeeEEEEEec
Q 009920 94 SSIHSSPGPGRTKKIFVGGLAST-VTESDFKKYFDQFGTITDVVVMYD 140 (522)
Q Consensus 94 ~~~~~~~~~~~~~~LfVgnLp~~-vteedL~~~F~~fG~I~~v~i~~d 140 (522)
-....-=|.|.+||.. .+++-|+++.+.+|++.+++....
T Consensus 100 -------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 100 -------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred -------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 0012223667799977 578889999999999988876544
No 213
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=83.60 E-value=1.7 Score=34.96 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=50.0
Q ss_pred HHHHHHHhccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHcccccCCeEEEEeecCCCc
Q 009920 20 ERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVPRD 84 (522)
Q Consensus 20 edL~e~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~I~V~~a~~k~ 84 (522)
++|++.|+++| +|..+..|..+++...--.=+|+.....+... +++-+.|.+++|.|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCcccC
Confidence 57889999988 68889888888877777778888877655554 567788899999998776543
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=82.94 E-value=0.91 Score=50.67 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=60.4
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
.+..++||+++...+.++-++.+...+|.|..+.... |+|++|.......+|+..+. ..++++.+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4567899999999999999999999999988776653 89999999999999998888 6888888877653
No 215
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=82.54 E-value=0.18 Score=57.54 Aligned_cols=28 Identities=25% Similarity=0.473 Sum_probs=24.4
Q ss_pred CCCcEEEECCCCCC-CCHHHHHHHHhccC
Q 009920 3 SDLGKLFIGGISWD-TDEERLKEYFSRYG 30 (522)
Q Consensus 3 ~d~r~LfVgnLP~~-~teedL~e~F~~~G 30 (522)
..+|+|+|..||.+ .++++|+++|.+..
T Consensus 206 ~ssRTvlis~LP~~~~~~e~L~~~~~kl~ 234 (827)
T COG5594 206 LSSRTVLISGLPSELRSDEELKELFDKLK 234 (827)
T ss_pred CCCceEEeecCChhhcCchhHHHHHhhcC
Confidence 36899999999999 67888999999874
No 216
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=82.49 E-value=2.2 Score=34.14 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=49.8
Q ss_pred HHHHHHHhccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHcccccCCeEEEEeecCCCc
Q 009920 20 ERLKEYFSRYG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVPRD 84 (522)
Q Consensus 20 edL~e~F~~~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~~~i~Gr~I~V~~a~~k~ 84 (522)
++|++.|+..| +|.++.-|..+.+.+.--.-||+.+...+.. -+.+-..|.+.+|+|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k-~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK-EIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc-ceeehHhhCCeEEEEecCCCCC
Confidence 57888898887 6888888888877778888899988877733 3466678889999998776543
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.94 E-value=3.3 Score=39.81 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=42.7
Q ss_pred CCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--Hc--ccccCCeEEEEeecCCC
Q 009920 17 TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MD--KHMIDGRTVEAKKAVPR 83 (522)
Q Consensus 17 ~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~--~~~i~Gr~I~V~~a~~k 83 (522)
-..++|+++|..+.++..+.+++.= +-..|.|.+.++|.+|. ++ ...+.+..+++..+...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3568899999999999888777642 35789999999999998 56 77899999999887443
No 218
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=81.88 E-value=9.9 Score=38.66 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=39.4
Q ss_pred ceeEecCCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCcceEEEEEecC-------HHHHHHHHHh
Q 009920 106 KKIFVGGLASTVTESDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDS-------EEAVDRVLHK 166 (522)
Q Consensus 106 ~~LfVgnLp~~vteedL~~~F~~fG~I-~~v~i~~d~~tg~~rG~aFVeF~s-------~e~A~~Al~~ 166 (522)
.-|+|.|||.++.-.||+..+.+-+.+ .++.+ +-+++-||++|-+ .+++++++..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s 393 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKS 393 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhcc
Confidence 469999999999999999999887654 23333 2345689999955 3455555543
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=80.79 E-value=1.3 Score=50.61 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=65.2
Q ss_pred eeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-C--ccCCeEEEEEEcCC
Q 009920 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-H--ELNGKMVEVKRAVP 183 (522)
Q Consensus 107 ~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~--~l~Gr~I~V~~a~p 183 (522)
+..+.|++-.++...|..+|.+||.|.++..+++-+ .|.|+|.+.+.|..|++++. + ...|-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 456677777888899999999999999999988866 79999999999999998877 4 46778899999998
Q ss_pred CCCCCC
Q 009920 184 KEFSPG 189 (522)
Q Consensus 184 k~~~~~ 189 (522)
-+....
T Consensus 374 ~~~~ep 379 (1007)
T KOG4574|consen 374 LPMYEP 379 (1007)
T ss_pred cccccC
Confidence 776543
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.70 E-value=5.4 Score=32.19 Aligned_cols=58 Identities=24% Similarity=0.357 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHhhcCC-----eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 009920 115 STVTESDFKKYFDQFGT-----ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRA 181 (522)
Q Consensus 115 ~~vteedL~~~F~~fG~-----I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (522)
..++..+|..++..... |-+|+|..+ |+||+-... .++++++.++ ..++|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45778888888876543 445666543 889997654 6677777777 8999999999875
No 221
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.43 E-value=8.1 Score=41.64 Aligned_cols=65 Identities=14% Similarity=0.296 Sum_probs=54.3
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-Ccc
Q 009920 105 TKKIFVGGLASTVTESDFKKYFDQF-GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HEL 171 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~f-G~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l 171 (522)
...|+|-.+|..+|-.||-.|...+ -.|.+++|++|.... +=.++|+|.+.++|..-.+..+ +.|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcC
Confidence 7789999999999999999999876 458999999976543 3478999999999999998777 443
No 222
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=71.82 E-value=38 Score=35.52 Aligned_cols=6 Identities=0% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHHH
Q 009920 121 DFKKYF 126 (522)
Q Consensus 121 dL~~~F 126 (522)
+|..+|
T Consensus 244 ei~~~~ 249 (465)
T KOG3973|consen 244 EIQSIL 249 (465)
T ss_pred HHHHHH
Confidence 444444
No 223
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=71.41 E-value=29 Score=39.63 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=45.5
Q ss_pred ceeEec-CCCCCCCHHHHHHHHhhcCCe-----eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009920 106 KKIFVG-GLASTVTESDFKKYFDQFGTI-----TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 106 ~~LfVg-nLp~~vteedL~~~F~~fG~I-----~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
.++||. +-...++..+|-.++..-+.| -+|+|..+ |.||+-.. +.+++.++.+. ..+.+++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 345442 223567777777777654433 34566533 78888754 44667777776 7899999999
Q ss_pred EEcCCC
Q 009920 179 KRAVPK 184 (522)
Q Consensus 179 ~~a~pk 184 (522)
+.+...
T Consensus 558 ~~~~~~ 563 (629)
T PRK11634 558 QLLGDA 563 (629)
T ss_pred EECCCC
Confidence 988533
No 224
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=69.19 E-value=3.4 Score=47.47 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=57.2
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--Hccccc--CCeEEEEeecC
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMI--DGRTVEAKKAV 81 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i--~Gr~I~V~~a~ 81 (522)
.+.++-|.+-..+..-|..+|.+||.|.+++.+++-+ .|.|+|.+.|.|..|+ ++++++ -|-+.+|..++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 4566777778888999999999999999999999876 8999999999999998 555543 35556666655
Q ss_pred CC
Q 009920 82 PR 83 (522)
Q Consensus 82 ~k 83 (522)
+.
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 44
No 225
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=67.18 E-value=19 Score=31.96 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=62.0
Q ss_pred CCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHcc--cccCCeEEEEeecCCCccccccc
Q 009920 13 ISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK--HMIDGRTVEAKKAVPRDDQNMLN 90 (522)
Q Consensus 13 LP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl~~~--~~i~Gr~I~V~~a~~k~~~~~~~ 90 (522)
||+-++ +|-++|+.-|+|.+|..+..-. | .+|..- +++ ..+++. |.+-.......-...
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqyp-------------d-ndal~~-~~G~lE~vDg~-i~IGs~q~~~sV~i~- 71 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYP-------------D-NDALLY-VHGTLEQVDGN-IRIGSGQTPASVRIQ- 71 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccC-------------C-chhhhe-eeeehhhccCc-EEEccCCCcccEEEe-
Confidence 777665 5999999999998887665422 1 122111 222 244554 555433211110000
Q ss_pred cccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhh---cCCeeEEEEEecCCCCCcceEEEEEecCH
Q 009920 91 RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQ---FGTITDVVVMYDHNTQRPRGFGFITYDSE 157 (522)
Q Consensus 91 ~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~---fG~I~~v~i~~d~~tg~~rG~aFVeF~s~ 157 (522)
..+.-...+| -|.++|..+|+++|.+ |--|++-.+.+|--..-+--.||..|...
T Consensus 72 ---------gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 72 ---------GTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ---------cCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0111223344 4889999999999975 55555555555532222233788888654
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.22 E-value=30 Score=36.91 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=51.3
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEE
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMV 176 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I-~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I 176 (522)
+-.+.|=|-++|.....+||-..|+.|+.- -+|+++.|. .||-.|.+...|..||-+.+..|.=|.|
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeeeh
Confidence 356788899999999999999999998653 456666554 6999999999999999775444443443
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.29 E-value=11 Score=33.49 Aligned_cols=46 Identities=11% Similarity=0.372 Sum_probs=27.8
Q ss_pred CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecC-HHHHHHHHHh
Q 009920 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLHK 166 (522)
Q Consensus 118 teedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s-~e~A~~Al~~ 166 (522)
+.++|++.|..|.+++ ++.+.++. ..+|+++|+|.. -.-.+.|+..
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 4578999999998874 66666654 568899999954 4444555443
No 228
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=63.91 E-value=31 Score=27.52 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEE
Q 009920 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEV 178 (522)
Q Consensus 115 ~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (522)
..++-+||+..+.+|.- .+|..|+. | =||.|.+.++|+++....+ ..+..-++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~t-----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRT-----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCC-----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35788999999999953 34444432 3 3899999999999999887 5555555443
No 229
>PF03778 DUF321: Protein of unknown function (DUF321) ; InterPro: IPR005529 This entry represents a group of tandem repeats, found in Arabidopsis species, whose sequence is distantly related to the FARP (FMRFamide) group of neuropeptides (IPR002544 from INTERPRO). The function of these repeats is not known, being mostly found in uncharacterised proetins, but they are also present in the nuclear migration protein NUM1 [].
Probab=63.48 E-value=3.2 Score=25.19 Aligned_cols=13 Identities=46% Similarity=1.027 Sum_probs=11.1
Q ss_pred hhhhcccceeeee
Q 009920 500 TLWRENLDFFFFE 512 (522)
Q Consensus 500 ~~~~~~~~~~~~~ 512 (522)
..||||.-|.|+-
T Consensus 2 rFwreN~gftFla 14 (20)
T PF03778_consen 2 RFWRENHGFTFLA 14 (20)
T ss_pred ccceeecCEEEEe
Confidence 4799999998874
No 230
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.45 E-value=13 Score=39.53 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=44.2
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCC-eEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGE-VVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~-V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
.+.|=|-++|.....+||...|+.|.. --+|++|-|. .||-.|.+...|..||
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaL 444 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEAL 444 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHh
Confidence 367889999999888899999999854 3456666664 7999999999999999
No 231
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=62.35 E-value=4.2 Score=38.67 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=39.1
Q ss_pred cceeEecCCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCC-CCcceEEEEEecCHHHHHHHHHhcCC
Q 009920 105 TKKIFVGGLASTVTESDFKKYFDQF-GTITDVVVMYDHNT-QRPRGFGFITYDSEEAVDRVLHKTFH 169 (522)
Q Consensus 105 ~~~LfVgnLp~~vteedL~~~F~~f-G~I~~v~i~~d~~t-g~~rG~aFVeF~s~e~A~~Al~~~~~ 169 (522)
.++++.. .|+++|.++.+=. +.+..|.+-...+. ...+|..||+|.+.+.|.+.++....
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~ 172 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEE 172 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhh
Confidence 3455554 5555555544321 67777776654432 25689999999999999998876553
No 232
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.31 E-value=22 Score=28.46 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=44.9
Q ss_pred HHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCCC
Q 009920 120 SDFKKYFDQFG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVPK 184 (522)
Q Consensus 120 edL~~~F~~fG-~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~pk 184 (522)
++|++.|...| +|..|.-+..+.+..+.-.-||+.+...+.+++ ++ +.|.+.+|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 56778887776 477787777776677777788888776664433 34 6889999999876644
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.00 E-value=11 Score=33.47 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=31.0
Q ss_pred EEEECCCCCC---------CCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCH-HHHHHHH
Q 009920 7 KLFIGGISWD---------TDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAERVI 64 (522)
Q Consensus 7 ~LfVgnLP~~---------~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~-e~A~kAl 64 (522)
.+.|-|+|.+ ++.++|++.|+.|.+++ ++.+.++. .+++++.|+|... .--+.|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 4567788664 35678999999998874 66666653 6899999999653 3334444
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=57.29 E-value=25 Score=28.32 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=45.7
Q ss_pred HHHHHHHhhcCC-eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCeEEEEEEcCC
Q 009920 120 SDFKKYFDQFGT-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGKMVEVKRAVP 183 (522)
Q Consensus 120 edL~~~F~~fG~-I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~p 183 (522)
++|++.|+.+|- +..|.-+..+.+..+.-.-+|+.....+... .++ +.|.+++|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 468888888874 7888888888777777778888877654444 344 789999999987653
No 235
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=57.00 E-value=16 Score=37.73 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=35.7
Q ss_pred EEEEecCHHHHHHHHHcccccCCeEEEEeecCCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhh
Q 009920 50 GFVVFADPAVAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQ 128 (522)
Q Consensus 50 aFVeF~~~e~A~kAl~~~~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~ 128 (522)
|||+|++.++|+.|+..-+..+.++++++.|.+ .+-|.-.||..+..+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APe----------------------P~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPE----------------------PDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCC----------------------cccccccccCCChHHHHHHHHHHH
Confidence 799999999999999433333334445554432 233556677666666666655543
No 236
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=56.76 E-value=9.4 Score=36.37 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=38.6
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCC-CCcccEEEEEecCHHHHHHHH
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRAT-GRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~t-g~srG~aFVeF~~~e~A~kAl 64 (522)
.+++|.+ |.+...++|.++-+ +++..+.+.+..+. -..+|-.||+|.+.+.|++++
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~ 167 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFAND 167 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhh
Confidence 3556665 44444555555555 78888777654331 267899999999999999987
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=56.28 E-value=34 Score=34.74 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=29.9
Q ss_pred CCCcceeEecCCCCC------------CCHHHHHHHHhhcCCeeEEEEEe
Q 009920 102 PGRTKKIFVGGLAST------------VTESDFKKYFDQFGTITDVVVMY 139 (522)
Q Consensus 102 ~~~~~~LfVgnLp~~------------vteedL~~~F~~fG~I~~v~i~~ 139 (522)
.....+|++..||-. .+|+.|+..|+.||.|..|.|+.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345678888888842 35778999999999998888764
No 238
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=52.87 E-value=47 Score=35.53 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=30.8
Q ss_pred CCcEEEECCCCCC-CCHHHHHHHHhcc----CCeEEEEEeec
Q 009920 4 DLGKLFIGGISWD-TDEERLKEYFSRY----GEVVEAVIMRD 40 (522)
Q Consensus 4 d~r~LfVgnLP~~-~teedL~e~F~~~----G~V~~v~i~~d 40 (522)
...+|-|-||.|+ +..++|...|+.| |+|..|.|.+.
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 4578999999999 8889999999887 67887888664
No 239
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=52.01 E-value=33 Score=35.24 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=61.0
Q ss_pred CCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecC-------CCCCcceEEEEEecCHHHHHH----HHHhc---C
Q 009920 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH-------NTQRPRGFGFITYDSEEAVDR----VLHKT---F 168 (522)
Q Consensus 103 ~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~-------~tg~~rG~aFVeF~s~e~A~~----Al~~~---~ 168 (522)
-.++.|...|+..+++-..+.+.|.+|++|+.|.++.+. +..+......+.|-+.+.+.. .|+.+ .
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999776 122334578999988776542 33333 3
Q ss_pred CccCCeEEEEEEcC
Q 009920 169 HELNGKMVEVKRAV 182 (522)
Q Consensus 169 ~~l~Gr~I~V~~a~ 182 (522)
+.|+-..|.|.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 57888888887765
No 240
>PF15013 CCSMST1: CCSMST1 family
Probab=51.16 E-value=6.1 Score=32.49 Aligned_cols=17 Identities=41% Similarity=0.934 Sum_probs=13.4
Q ss_pred ehhhhhhHHHhhhhhhh
Q 009920 478 FTFLIWYCFVRAIRDSA 494 (522)
Q Consensus 478 ~~~~~~~~~~~~~~~~~ 494 (522)
..||||+||+|.=-|..
T Consensus 41 ~~fliyFC~lReEnDiD 57 (77)
T PF15013_consen 41 AAFLIYFCFLREENDID 57 (77)
T ss_pred HHHHHHHhhccccccHH
Confidence 67999999999765543
No 241
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=47.61 E-value=67 Score=30.85 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=12.8
Q ss_pred CHHHHHHHHhhcCCeeEEEEEe
Q 009920 118 TESDFKKYFDQFGTITDVVVMY 139 (522)
Q Consensus 118 teedL~~~F~~fG~I~~v~i~~ 139 (522)
+.++|-++=|-||+|.++.+..
T Consensus 87 nk~qIGKVDEIfG~i~d~~fsI 108 (215)
T KOG3262|consen 87 NKEQIGKVDEIFGPINDVHFSI 108 (215)
T ss_pred chhhhcchhhhcccccccEEEE
Confidence 3445555556677777665543
No 242
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=45.69 E-value=1.7e+02 Score=23.91 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=40.8
Q ss_pred eEecCCCCCCCHHHHHHHHhh-------cCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC
Q 009920 108 IFVGGLASTVTESDFKKYFDQ-------FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF 168 (522)
Q Consensus 108 LfVgnLp~~vteedL~~~F~~-------fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~ 168 (522)
|...+||..+|.++|.+...+ +..|.-++-..+.+.+ |-||+.+=.++|+++++.++..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~aG 68 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARRAG 68 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHHcC
Confidence 456788988999998887754 3344455544444323 4588888899999999887654
No 243
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.86 E-value=29 Score=35.76 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=27.6
Q ss_pred EEEEecCHHHHHHHHHhcCCccCCeEEEEEEcCCCCCC
Q 009920 150 GFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFS 187 (522)
Q Consensus 150 aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a~pk~~~ 187 (522)
|||+|+++++|+.|++...+. +.+.++|+.|-++++-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-~~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-RPNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-CCCCceEeeCCCcccc
Confidence 799999999999999865532 2355688887766553
No 244
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=40.17 E-value=26 Score=33.58 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=49.9
Q ss_pred ceeEecCCCCCCCH-----HHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcC-CccCCe-EEEE
Q 009920 106 KKIFVGGLASTVTE-----SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTF-HELNGK-MVEV 178 (522)
Q Consensus 106 ~~LfVgnLp~~vte-----edL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~-~~l~Gr-~I~V 178 (522)
..+.+-.++..+.. .+.+.+|.+|-+....++++ +.+..-|.|.+++.|..|..++. ..|+++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 44566666655432 34555666665554444443 23467789999999999999988 789998 7887
Q ss_pred EEcCCCC
Q 009920 179 KRAVPKE 185 (522)
Q Consensus 179 ~~a~pk~ 185 (522)
-++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7776543
No 245
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.01 E-value=36 Score=28.76 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=25.2
Q ss_pred EEEEecCHHHHHHHHHhcCC--ccCCeEEEEEE
Q 009920 150 GFITYDSEEAVDRVLHKTFH--ELNGKMVEVKR 180 (522)
Q Consensus 150 aFVeF~s~e~A~~Al~~~~~--~l~Gr~I~V~~ 180 (522)
|+|+|++++-|++.+++-.+ .++...+.|+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 68999999999999988763 67777776654
No 246
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.18 E-value=1.1e+02 Score=25.49 Aligned_cols=56 Identities=11% Similarity=0.221 Sum_probs=40.4
Q ss_pred EecCCCCCCCHHHHHHHHhh-cCC-eeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhc
Q 009920 109 FVGGLASTVTESDFKKYFDQ-FGT-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (522)
Q Consensus 109 fVgnLp~~vteedL~~~F~~-fG~-I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~ 167 (522)
|+--++..++..+|++.+++ |+. |.+|..+.-+... --|+|++...++|.....++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~---KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE---KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---EEEEEEeCCCCcHHHHHHhh
Confidence 34456888999999999987 553 6777766554321 25999999988888776544
No 247
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=37.67 E-value=88 Score=28.41 Aligned_cols=123 Identities=14% Similarity=0.059 Sum_probs=51.4
Q ss_pred cEEEECCCC----CCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEE-ecCHHHHHHHH-HcccccCCeEEEEee
Q 009920 6 GKLFIGGIS----WDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVV-FADPAVAERVI-MDKHMIDGRTVEAKK 79 (522)
Q Consensus 6 r~LfVgnLP----~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVe-F~~~e~A~kAl-~~~~~i~Gr~I~V~~ 79 (522)
..+++++|- ..+.-+||+++|++.| ..+|+-.-. .|-...+ =.++++.++.| ..-..-.|..+.|-.
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~------SGNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~v 76 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQ------SGNVVFESDRDPAELAAKIEKALEERFGFDVPVIV 76 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT------TTEEEEEESS-HHHHHHHHHHHHHHH-TT---EEE
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEe------eCCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 346778773 3478999999999998 355553332 2333333 22333333333 111222233343332
Q ss_pred cCCCccccccccccCCCCCCCCCCCcceeEecCCCCCCCHHHHHHHHhhcCCeeEEEEE
Q 009920 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVM 138 (522)
Q Consensus 80 a~~k~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~ 138 (522)
-...+-.......+..... ..+.++++|-=|....+.+.+.++-..-...+.+.+.
T Consensus 77 rs~~el~~i~~~nPf~~~~---~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~~ 132 (137)
T PF08002_consen 77 RSAEELRAIIAANPFPWEA---EADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRVG 132 (137)
T ss_dssp EEHHHHHHHHTT--GGGGS-------SEEEEEEE-TT--HHHHHHHHTS---SEEEEE-
T ss_pred eeHHHHHHHHHHCCCcccc---cCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEEe
Confidence 2222222222222211111 1345677777788888888888887655445555553
No 248
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.61 E-value=62 Score=25.56 Aligned_cols=19 Identities=21% Similarity=0.625 Sum_probs=15.4
Q ss_pred HHHHHHHHhccCCeEEEEE
Q 009920 19 EERLKEYFSRYGEVVEAVI 37 (522)
Q Consensus 19 eedL~e~F~~~G~V~~v~i 37 (522)
.++|+++|+.+|+|.-+.|
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999965555
No 249
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.60 E-value=14 Score=39.37 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=50.5
Q ss_pred CcEEEECCCCCCCCHH--------HHHHHHhc--cCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 5 LGKLFIGGISWDTDEE--------RLKEYFSR--YGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 5 ~r~LfVgnLP~~~tee--------dL~e~F~~--~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
.|.+|+.+...+.+.+ +|...|.. ++++..+.+.++..+..++|-.|++|+..+.|++++
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 3567777777765544 89999998 788888889888767889999999999999999998
No 250
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=37.43 E-value=22 Score=36.07 Aligned_cols=33 Identities=27% Similarity=0.573 Sum_probs=27.1
Q ss_pred cEEEECCCCCC------------CCHHHHHHHHhccCCeEEEEEe
Q 009920 6 GKLFIGGISWD------------TDEERLKEYFSRYGEVVEAVIM 38 (522)
Q Consensus 6 r~LfVgnLP~~------------~teedL~e~F~~~G~V~~v~i~ 38 (522)
.+|++-.||-. -+|+.|+..|+.||+|..|.|.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 47888888853 3678899999999999988873
No 251
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=36.94 E-value=1.4e+02 Score=24.50 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=40.0
Q ss_pred eEecCCCCCCCHHHHHHHHhh-cC-CeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhc
Q 009920 108 IFVGGLASTVTESDFKKYFDQ-FG-TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167 (522)
Q Consensus 108 LfVgnLp~~vteedL~~~F~~-fG-~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~ 167 (522)
-|+-.++..++..||++.+++ |+ .|.+|..+.-+..- --|||++...++|...-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~---KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE---KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHhh
Confidence 445567889999999999987 55 36677665554321 25999998887777765443
No 252
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=36.88 E-value=38 Score=36.55 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEec--CHHHHHHHH--Hcc--cccCCeEEEEeecC
Q 009920 16 DTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPAVAERVI--MDK--HMIDGRTVEAKKAV 81 (522)
Q Consensus 16 ~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~--~~e~A~kAl--~~~--~~i~Gr~I~V~~a~ 81 (522)
++.+.+|+++|+.+.+...+.|+.++. ..+-.-+.|. +.++|-.+| ..+ ...++..+.|..+.
T Consensus 7 ~~~~~~l~dvL~~la~~~g~NiVi~~~---V~g~Vtl~~~~v~~~~al~~Il~~~gl~~~~~gnvi~V~~~~ 75 (418)
T TIGR02515 7 NFQDIPVRTVLQVIAEFTNLNIVVSDS---VQGNITLRLKNVPWDQALDIILKSKGLDKRRDGNIIYIAPLD 75 (418)
T ss_pred EEeCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEEeCCCHHHHHHHHHHhCCCCEEEECCEEEEecHH
Confidence 344556777776666666666666543 2344455564 456776666 333 23467777776553
No 253
>PF14893 PNMA: PNMA
Probab=33.73 E-value=36 Score=35.75 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCcEEEECCCCCCCCHHHHHHHHhc
Q 009920 4 DLGKLFIGGISWDTDEERLKEYFSR 28 (522)
Q Consensus 4 d~r~LfVgnLP~~~teedL~e~F~~ 28 (522)
..+.|.|.+||.+|+++||++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3577899999999999999998764
No 254
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.49 E-value=9.7 Score=40.90 Aligned_cols=75 Identities=5% Similarity=-0.184 Sum_probs=56.6
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEEEeec
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVEAKKA 80 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~V~~a 80 (522)
+.+.|+..||...++++|.-+|+.++.|..+.+.+..+.+..+-.+||.-.+ ++|..+| +..+.+.+.++++..+
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 4567889999999999999999999999988887777667777788887654 3455555 4555566666655444
No 255
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.42 E-value=2e+02 Score=21.57 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=39.5
Q ss_pred eeEecCCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCH----HHHHHHHHhcC
Q 009920 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE----EAVDRVLHKTF 168 (522)
Q Consensus 107 ~LfVgnLp~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~----e~A~~Al~~~~ 168 (522)
++.|.++.=.--...|++.+.+.-.|.++.+-... +.+-|+|+.. ++..++|++..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHhC
Confidence 35566665555667899999988888888875443 3688999653 67777777654
No 256
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.41 E-value=1.2e+02 Score=25.35 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=40.3
Q ss_pred EEECCCCCCCCHHHHHHHHhc-cC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 8 LFIGGISWDTDEERLKEYFSR-YG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 8 LfVgnLP~~~teedL~e~F~~-~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
-|+=-++.+++..+|++.+++ |+ +|.+|..+..+. ..--|||.+...++|..+.
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHH
Confidence 344457889999999999998 44 577777766542 2235999999988888765
No 257
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=31.72 E-value=39 Score=32.36 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=48.9
Q ss_pred cEEEECCCCCCCC-HH----HHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCe-EEEE
Q 009920 6 GKLFIGGISWDTD-EE----RLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGR-TVEA 77 (522)
Q Consensus 6 r~LfVgnLP~~~t-ee----dL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr-~I~V 77 (522)
..+++.+|+.++- +. ..+.+|..|.++.-..+++ +.+..-|.|.+++.|..|. ++...+.++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577788887732 22 2345666666655555544 3456778899999999987 778888887 7777
Q ss_pred eecCCC
Q 009920 78 KKAVPR 83 (522)
Q Consensus 78 ~~a~~k 83 (522)
..+++.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 776654
No 258
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.93 E-value=1.9e+02 Score=24.33 Aligned_cols=42 Identities=12% Similarity=0.024 Sum_probs=32.3
Q ss_pred HHHHHHHHhcc-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 19 EERLKEYFSRY-GEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 19 eedL~e~F~~~-G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
.+.++++++++ |+|+++.+...+.+ -...+++.|.+.|.++.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD----~v~i~eaPD~~~a~~~~ 64 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYD----FVVIVEAPDDETAAAAS 64 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCC----EEEEEEcCCHHHHHHHH
Confidence 34577888887 47888888775433 47889999999998887
No 259
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.82 E-value=37 Score=33.80 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=28.3
Q ss_pred CCCCcEEEECCCCCCCCHHHHHHHHhccCCeEE
Q 009920 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVE 34 (522)
Q Consensus 2 e~d~r~LfVgnLP~~~teedL~e~F~~~G~V~~ 34 (522)
..+...||+-|||..+||+.|+++...++-|..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 446678999999999999999999999986543
No 260
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=29.53 E-value=3.2e+02 Score=22.50 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCccCCeEEEEEEc
Q 009920 112 GLASTVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181 (522)
Q Consensus 112 nLp~~vteedL~~~F-~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (522)
-+|..+.-+||+... ..||.-.++....+ .-.|-..+.++.++|++.++..-.-+.++|-..
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s~~~ksLRilL~ 77 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRSPHMKSLRILLS 77 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccCccccceeEeEe
Confidence 457777777776665 57998777776544 257888999999999999986555566665443
No 261
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=27.26 E-value=1.4e+02 Score=30.06 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=22.4
Q ss_pred CCCCCcEEEECCCCCCCCHHHHHHHHhccC
Q 009920 1 MESDLGKLFIGGISWDTDEERLKEYFSRYG 30 (522)
Q Consensus 1 me~d~r~LfVgnLP~~~teedL~e~F~~~G 30 (522)
||...++.|+. |+..++++-|.-+.+++|
T Consensus 154 ~Dh~nr~aY~~-lS~Rad~~lLe~fc~~~g 182 (318)
T COG4874 154 MDHPNRTAYAG-LSQRADRELLEVFCEQIG 182 (318)
T ss_pred ecccchhhhhh-hhcccCHHHHHHHHHHcC
Confidence 56778888885 888888877777777766
No 262
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.06 E-value=46 Score=23.37 Aligned_cols=16 Identities=56% Similarity=0.783 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhccC
Q 009920 15 WDTDEERLKEYFSRYG 30 (522)
Q Consensus 15 ~~~teedL~e~F~~~G 30 (522)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998764
No 263
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=25.70 E-value=3.2e+02 Score=28.65 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=29.3
Q ss_pred eeEecCCCCCCCHHHHH---HHHhhcCCeeEEEEEecCCCCCcceEEEEEe
Q 009920 107 KIFVGGLASTVTESDFK---KYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154 (522)
Q Consensus 107 ~LfVgnLp~~vteedL~---~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF 154 (522)
..++.+||..+.+.+++ +++.+. .+.++.|..+...+...|++++-+
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 56788899888776554 444452 234556666655566777776544
No 264
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=25.54 E-value=1.5e+02 Score=23.50 Aligned_cols=18 Identities=28% Similarity=0.715 Sum_probs=14.4
Q ss_pred HHHHHHHhhcCCeeEEEE
Q 009920 120 SDFKKYFDQFGTITDVVV 137 (522)
Q Consensus 120 edL~~~F~~fG~I~~v~i 137 (522)
++|+++|++.|+|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999864433
No 265
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=25.39 E-value=3.7e+02 Score=21.84 Aligned_cols=59 Identities=8% Similarity=-0.049 Sum_probs=39.8
Q ss_pred EEECCCCCCCCHHHHHHHHhc-------cCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH-Hccc
Q 009920 8 LFIGGISWDTDEERLKEYFSR-------YGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKH 68 (522)
Q Consensus 8 LfVgnLP~~~teedL~e~F~~-------~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl-~~~~ 68 (522)
|..++||..+|.++|.+.-.+ +..|.-++-..+++ +.|-||+.+=.++|..+++- ..+.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~~~aG~ 69 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHARRAGL 69 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHHHHcCC
Confidence 567889988999999876644 33444444333332 34778888889999888887 4433
No 266
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.34 E-value=2.9e+02 Score=28.07 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=33.2
Q ss_pred EEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 7 ~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
...|.|||+.++..-|.++++..-.+..+.+|.. +|.|++.+
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q----------------kEva~Rl~ 138 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ----------------KEVAERLV 138 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEEeH----------------HHHHHHHh
Confidence 4579999999999999999987655555666654 57888887
No 267
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=24.46 E-value=2.4e+02 Score=25.13 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHHhcCCcc
Q 009920 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHEL 171 (522)
Q Consensus 115 ~~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~~~~~~l 171 (522)
..++++||+-+.++.+. +.+.|.+||+..+-+|
T Consensus 73 ~~i~~edI~lv~~q~gv------------------------s~~~A~~AL~~~~gDl 105 (115)
T PRK06369 73 VEIPEEDIELVAEQTGV------------------------SEEEARKALEEANGDL 105 (115)
T ss_pred CCCCHHHHHHHHHHHCc------------------------CHHHHHHHHHHcCCcH
Confidence 46899999999988752 4689999998887443
No 268
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=24.15 E-value=87 Score=32.12 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=34.4
Q ss_pred cEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCH
Q 009920 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP 57 (522)
Q Consensus 6 r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~ 57 (522)
.-|+|.|||.++--.||+..+.+.+-+- +.|.- .-.++-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCc
Confidence 4599999999999999999998775431 22211 13567899999664
No 269
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=23.88 E-value=4e+02 Score=21.66 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=35.1
Q ss_pred eEecCCCCCCCHHHHHHHHh-------hcCCeeEEEEEecCCCCC-cce---EEEEEecCHHHHHHHH
Q 009920 108 IFVGGLASTVTESDFKKYFD-------QFGTITDVVVMYDHNTQR-PRG---FGFITYDSEEAVDRVL 164 (522)
Q Consensus 108 LfVgnLp~~vteedL~~~F~-------~fG~I~~v~i~~d~~tg~-~rG---~aFVeF~s~e~A~~Al 164 (522)
|.+-.|...+++++++++.+ +...|+++.+-++..... .++ .-+++|+++++.++-+
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 44446778888887765543 345677877766654332 122 3467888888775433
No 270
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.59 E-value=5.9e+02 Score=23.57 Aligned_cols=54 Identities=11% Similarity=0.181 Sum_probs=36.1
Q ss_pred eEecCCCCCCCHHHHHHHHhh-cCC-eeEEEEEecCCCCCcceEEEEEecCHHHHHHHH
Q 009920 108 IFVGGLASTVTESDFKKYFDQ-FGT-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164 (522)
Q Consensus 108 LfVgnLp~~vteedL~~~F~~-fG~-I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al 164 (522)
.++--++..++..||++.+++ |+. |..|..+..+...+ -|||++...++|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K---KA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK---KAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce---EEEEEECCCCcHHHHH
Confidence 445557888999999999987 553 66666555443111 5999997766654443
No 271
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=23.58 E-value=34 Score=26.18 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=22.8
Q ss_pred cceEEEEEecC-HHHHHHHHHhcCCccCCeEEEEEEcC
Q 009920 146 PRGFGFITYDS-EEAVDRVLHKTFHELNGKMVEVKRAV 182 (522)
Q Consensus 146 ~rG~aFVeF~s-~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (522)
++||+||.-++ .++.--.-..++.-++|-++.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999987 33333333455567888888888776
No 272
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=23.29 E-value=1.8e+02 Score=23.92 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=39.6
Q ss_pred EEECCCCCCCCHHHHHHHHhc-cC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 009920 8 LFIGGISWDTDEERLKEYFSR-YG-EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64 (522)
Q Consensus 8 LfVgnLP~~~teedL~e~F~~-~G-~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl 64 (522)
-|+=.++.+++..||++.+++ |+ +|.+|..+.-+. ..=-|||.+...+.|..+-
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 444458899999999999998 44 577777666542 2235999998888877654
No 273
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.16 E-value=2.8e+02 Score=25.81 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=42.3
Q ss_pred CCCcEEEECCCCCCCCHHHHHHHHhcc---CCeEEEEEeecCCC---------CCccc-EEEEEecCHHHHH
Q 009920 3 SDLGKLFIGGISWDTDEERLKEYFSRY---GEVVEAVIMRDRAT---------GRARG-FGFVVFADPAVAE 61 (522)
Q Consensus 3 ~d~r~LfVgnLP~~~teedL~e~F~~~---G~V~~v~i~~d~~t---------g~srG-~aFVeF~~~e~A~ 61 (522)
+|..+|++.-+..-++|++.++..++= .++.+|.+-+.+++ ..-|. |-+|.|.|-+..+
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 466899999999999999999988764 56777776554432 12233 7888888766543
No 274
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.23 E-value=69 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=23.8
Q ss_pred EECCCCCCCCHHHHHHHHhc-cC-CeEEEEEeec
Q 009920 9 FIGGISWDTDEERLKEYFSR-YG-EVVEAVIMRD 40 (522)
Q Consensus 9 fVgnLP~~~teedL~e~F~~-~G-~V~~v~i~~d 40 (522)
|.=.+|.+++..||++++++ |+ +|.+|..+.-
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 34457889999999999998 55 4667765544
No 275
>PRK11901 hypothetical protein; Reviewed
Probab=21.78 E-value=1.6e+02 Score=30.80 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEE--EecCHHHHHHHHHhcCCccC
Q 009920 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI--TYDSEEAVDRVLHKTFHELN 172 (522)
Q Consensus 116 ~vteedL~~~F~~fG~I~~v~i~~d~~tg~~rG~aFV--eF~s~e~A~~Al~~~~~~l~ 172 (522)
...++.|+++..++. +..+.|.+....+++- |.+| .|.+.++|++|++.|...|.
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 355888888888875 5666666554444442 4433 57999999999999986554
No 276
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.69 E-value=39 Score=36.08 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=49.5
Q ss_pred cceeEecCCCCCCCH--------HHHHHHHhh--cCCeeEEEEEecCCCCCcceEEEEEecCHHHHHHHHH
Q 009920 105 TKKIFVGGLASTVTE--------SDFKKYFDQ--FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165 (522)
Q Consensus 105 ~~~LfVgnLp~~vte--------edL~~~F~~--fG~I~~v~i~~d~~tg~~rG~aFVeF~s~e~A~~Al~ 165 (522)
.+.+|+.+.....+. ++++..|.+ ++++..+...+|.....++|..|++|...+.+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 356777777765554 489999988 6778888888888667889999999999999999984
No 277
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=21.41 E-value=63 Score=31.73 Aligned_cols=26 Identities=31% Similarity=0.768 Sum_probs=19.0
Q ss_pred eeehhhhhhHHHhhhhhhhhhhhhhhhh
Q 009920 476 TIFTFLIWYCFVRAIRDSAFLSAFTLWR 503 (522)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (522)
+.-+||+|||.+-.| -.|++--.+|.
T Consensus 37 ~iG~fLlWyfviilv--Lm~~~ras~Wm 62 (243)
T PF15468_consen 37 AIGSFLLWYFVIILV--LMFFSRASVWM 62 (243)
T ss_pred hhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 345799999987666 56677667774
No 278
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.22 E-value=16 Score=40.41 Aligned_cols=72 Identities=7% Similarity=0.017 Sum_probs=0.0
Q ss_pred CcEEEECCCCCCCCHHHHHHHHhccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH--HcccccCCeEEE
Q 009920 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI--MDKHMIDGRTVE 76 (522)
Q Consensus 5 ~r~LfVgnLP~~~teedL~e~F~~~G~V~~v~i~~d~~tg~srG~aFVeF~~~e~A~kAl--~~~~~i~Gr~I~ 76 (522)
.|.|||+||+++++-++|..+++.+--+..+-+.......+...+..|.|+---..+.|+ ++++.+.-..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Done!