BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009922
(522 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296083048|emb|CBI22452.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/556 (63%), Positives = 410/556 (73%), Gaps = 41/556 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIARKLCPELIFVPTDF KYTYYSDLTRKVF KYDPNFMAASLDEAYLDITEVC ER
Sbjct: 156 MPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNER 215
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEELRTSV+E GLTCSAGVAPNRLLAKVCSDINKPNGQFVLP++RMAVMTFI
Sbjct: 216 DLTSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPSNRMAVMTFI 275
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SSLPIRKIGGIGKVTEHIL VFGINTCEEMLQKG LCA+FS S+ADFFLSVGLGLG T
Sbjct: 276 SSLPIRKIGGIGKVTEHILSGVFGINTCEEMLQKGGFLCALFSRSSADFFLSVGLGLGKT 335
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+TPQ RFRKSIS+ERTFS T+D ALLY+KLAE++EMLS DMQKEGL GRTLTLKLKTASF
Sbjct: 336 DTPQVRFRKSISNERTFSATDDTALLYQKLAELSEMLSIDMQKEGLSGRTLTLKLKTASF 395
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVR+RAVT+QKYI S EDIL HA LL AELP+SLRLIGLR++ FNEDK SDPTQKT
Sbjct: 396 EVRSRAVTMQKYICSREDILNHALKLLNAELPLSLRLIGLRISHFNEDKDGHLSDPTQKT 455
Query: 301 LTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNY------------ 348
L NF+ SG AS K V + + LGSD +D + D E +S+D ET +Y
Sbjct: 456 LANFIISGDASGKNVCEHSLLGSDTSDSHFMVDPENDLSIDNHETCHYVSEDLLDSNLLS 515
Query: 349 -----------EFGDPVCDNSLPDLNDE--NCSFSNKISEVEKIHENEVSQLLEGNSLVL 395
G +N LP LN + N + K H+ +VS L+E +S
Sbjct: 516 DLDHCNFNLSNNSGKIDNNNELP-LNGSVAKVNAPNVVGCAPKSHQIKVSHLVEADSFSF 574
Query: 396 RQE-EGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQE 454
++ E + D + D+ D+ V SSNQK+QF+W++DYKCSLCG E+PP+F+EERQE
Sbjct: 575 SEQCESNRPDRARRTNNDL--DDGV-PSSNQKEQFLWVNDYKCSLCGIELPPNFVEERQE 631
Query: 455 HSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQ--------KLFEKEG 506
H DFHLAE+LQKEES + ++ ++ +QRDH AS R+ K+ K +KE
Sbjct: 632 HFDFHLAEKLQKEESDNSRNLMLNQR---FSQRDHTASQRRHKRHKSSKKEGSKSSQKES 688
Query: 507 THIPIDMFFAKRNRNF 522
H+PIDMFF K N+NF
Sbjct: 689 KHLPIDMFFVKSNQNF 704
>gi|225428993|ref|XP_002264518.1| PREDICTED: DNA polymerase kappa-like [Vitis vinifera]
Length = 661
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/530 (65%), Positives = 399/530 (75%), Gaps = 32/530 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIARKLCPELIFVPTDF KYTYYSDLTRKVF KYDPNFMAASLDEAYLDITEVC ER
Sbjct: 156 MPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNER 215
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEELRTSV+E GLTCSAGVAPNRLLAKVCSDINKPNGQFVLP++RMAVMTFI
Sbjct: 216 DLTSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPSNRMAVMTFI 275
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SSLPIRKIGGIGKVTEHIL VFGINTCEEMLQKG LCA+FS S+ADFFLSVGLGLG T
Sbjct: 276 SSLPIRKIGGIGKVTEHILSGVFGINTCEEMLQKGGFLCALFSRSSADFFLSVGLGLGKT 335
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+TPQ RFRKSIS+ERTFS T+D ALLY+KLAE++EMLS DMQKEGL GRTLTLKLKTASF
Sbjct: 336 DTPQVRFRKSISNERTFSATDDTALLYQKLAELSEMLSIDMQKEGLSGRTLTLKLKTASF 395
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVR+RAVT+QKYI S EDIL HA LL AELP+SLRLIGLR++ FNEDK SDPTQKT
Sbjct: 396 EVRSRAVTMQKYICSREDILNHALKLLNAELPLSLRLIGLRISHFNEDKDGHLSDPTQKT 455
Query: 301 LTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 360
L NF+ SG AS K V + + LGSD +D + D E +S+D ET +Y D + N L
Sbjct: 456 LANFIISGDASGKNVCEHSLLGSDTSDSHFMVDPENDLSIDNHETCHYVSEDLLDSNLLS 515
Query: 361 DLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVG 420
DL+ N + SN +++ +E L N V + E D + D+ D+ V
Sbjct: 516 DLDHCNFNLSNNSGKIDNNNE------LPLNGSVAKCESNR-PDRARRTNNDL--DDGV- 565
Query: 421 TSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRE 480
SSNQK+QF+W++DYKCSLCG E+PP+F+EERQEH DFHLAE+LQKEES +
Sbjct: 566 PSSNQKEQFLWVNDYKCSLCGIELPPNFVEERQEHFDFHLAEKLQKEESDN--------- 616
Query: 481 RCVRTQRDHIASHRKRKKQ--------KLFEKEGTHIPIDMFFAKRNRNF 522
R+ AS R+ K+ K +KE H+PIDMFF K N+NF
Sbjct: 617 -----SRNLTASQRRHKRHKSSKKEGSKSSQKESKHLPIDMFFVKSNQNF 661
>gi|356539372|ref|XP_003538172.1| PREDICTED: DNA polymerase kappa-like [Glycine max]
Length = 663
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/527 (63%), Positives = 401/527 (76%), Gaps = 23/527 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIARKLCPELIFVPTDF KYTYYSDLTRKVF +YDPNF+A SLDEAYLDITEVCRER
Sbjct: 151 MPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFGRYDPNFIAGSLDEAYLDITEVCRER 210
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ EIA+ELR VYEE GLTCSAGVAPNRLLAKVCSDINKPNGQ+VLPNDRMAVMTF+
Sbjct: 211 NVKSEEIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFV 270
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SSLPIRKIGGIGKVTEHIL+ VFGINTCE+ML+K S +CA FS STADFF SVGLGLG T
Sbjct: 271 SSLPIRKIGGIGKVTEHILKGVFGINTCEQMLEKSSYICAFFSQSTADFFCSVGLGLGQT 330
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
++PQ RFRKSISSERTFS T+D+ LL++KL E+AEMLSADMQKEGL GRTLTLKLKTASF
Sbjct: 331 DSPQVRFRKSISSERTFSATKDEVLLHKKLEELAEMLSADMQKEGLSGRTLTLKLKTASF 390
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRAVTLQKYISSSEDILKHA LL+AELP+S+RLIGLRV+QFN DK A SDPTQKT
Sbjct: 391 EVRTRAVTLQKYISSSEDILKHAKKLLQAELPISVRLIGLRVSQFNGDKCSAKSDPTQKT 450
Query: 301 LTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 360
+TNF+TSG ++ S D+ D + + ET +S+D +T ++ DP N L
Sbjct: 451 ITNFITSGDVNRNC-----SSFPDVADHDFVSNAETDMSIDSRQTGQLDWRDPFDGNYLS 505
Query: 361 DLNDENCSF--SNKISEVE-------KIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDK 411
D++ ++C+ S+ + EV+ H + ++++L G++ L Q EG + +
Sbjct: 506 DVDYQSCTVQKSDGVEEVQTSSNDATSSHYSGLTEVL-GSTSYLGQVEGINVKNGSNLLE 564
Query: 412 DITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGS 471
D D S Q+ +WL+DYKCSLCG E+PPSF+EER EHSDFHLAE+LQKEES
Sbjct: 565 DERLD-----SCCQEKTMLWLNDYKCSLCGIELPPSFVEERLEHSDFHLAEKLQKEESSI 619
Query: 472 DLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKR 518
+ + + + Q+D + K KKQKL +KEG++ PID FF K+
Sbjct: 620 HQKSVPSQS---KGQKDGVTRQSKSKKQKLSQKEGSYTPIDYFFVKK 663
>gi|449438619|ref|XP_004137085.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus]
gi|449495765|ref|XP_004159938.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus]
Length = 693
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 324/546 (59%), Positives = 404/546 (73%), Gaps = 28/546 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIAR+LCPELI VPT+F KY YYSDLTRKVF +YDPNF+AASLDEAYLDITEVC+ER
Sbjct: 152 MPGFIARRLCPELILVPTNFDKYNYYSDLTRKVFHRYDPNFLAASLDEAYLDITEVCKER 211
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G++ EIA++LRTS++EE GLTCSAGVA NRLLAKVCSDINKPNGQF+LPNDR A++TFI
Sbjct: 212 GLTSEEIAKDLRTSIFEETGLTCSAGVAANRLLAKVCSDINKPNGQFILPNDRRAIVTFI 271
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SSLPIRKIGGIGKVTEHIL+D GINTCEEMLQKG LCA+FS S+ADFFLSVGLGLGST
Sbjct: 272 SSLPIRKIGGIGKVTEHILKDALGINTCEEMLQKGGHLCALFSQSSADFFLSVGLGLGST 331
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+TPQ RFRKSIS+ERTF+ T D+ L+++KLA++AEMLS DM+KEGL GRTLTLKLKTASF
Sbjct: 332 DTPQVRFRKSISNERTFAATTDERLIFQKLADLAEMLSMDMEKEGLTGRTLTLKLKTASF 391
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRAVTLQKYI SS DIL+ AS LLKAELPVSLRLIGLR++QFNED A DPTQ +
Sbjct: 392 EVRTRAVTLQKYICSSSDILQQASRLLKAELPVSLRLIGLRISQFNEDGATAGLDPTQIS 451
Query: 301 LTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETN---NYEFGDPVCDN 357
+T F+TSG A++K GD SL +D N+ +DD E +D T+ +++ + DN
Sbjct: 452 ITRFITSGDATRKSTGDCCSLNTDSNNHGFMDDTEIDTCIDGYGTDSETHHQVSNQRIDN 511
Query: 358 SLPDLNDENCSFSN---KISEVEKIHEN----------EVSQLLEGNSLVLRQEEGSCCD 404
+++D NC+ +N K E E + N + + + ++R+ + C
Sbjct: 512 KFSNMDDSNCTSTNDAEKSEEPENLLRNASADQANISTAIGSTSDSSDALIRRVSSTACS 571
Query: 405 GVEEVDKDITPDNKVG-------TSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSD 457
++ + P+N V S + Q W+D+YKC++CG E+P SF++ERQEH D
Sbjct: 572 SSRNLEGN--PNNNVDGENQVEVRSPDNNGQIWWIDNYKCTICGAEVPASFVDERQEHID 629
Query: 458 FHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQK-LFEKEGTHIPIDMFFA 516
FH+AE+LQ+EESG +R TH R ++ ++S RK K+QK EKE HIPID+FF
Sbjct: 630 FHIAEKLQEEESG--IRSRTHMPRQRTADKNLLSSPRKPKRQKSTPEKEVKHIPIDLFFM 687
Query: 517 KRNRNF 522
K N+ F
Sbjct: 688 KTNQKF 693
>gi|357480655|ref|XP_003610613.1| DNA polymerase IV [Medicago truncatula]
gi|355511948|gb|AES93571.1| DNA polymerase IV [Medicago truncatula]
Length = 706
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 310/507 (61%), Positives = 367/507 (72%), Gaps = 50/507 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRK---------------------------- 32
MPGFIARKLCPELIFVP DF KYT+YSDLTRK
Sbjct: 149 MPGFIARKLCPELIFVPVDFKKYTHYSDLTRKGIIFCVTDFYIVVFPLITDGSLKCTCSL 208
Query: 33 VFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRL 92
VF +YDPNF+A SLDEAYLDITEVCRER + EIA+E+R V EE GLTCSAGVAPNRL
Sbjct: 209 VFQRYDPNFIAGSLDEAYLDITEVCRERNVKSEEIAQEIRVGVLEETGLTCSAGVAPNRL 268
Query: 93 LAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 152
LAKVCSDINKPNGQ+VLPNDR+AVMTFISSLPIRKIGGIGKVTE IL++VFGI+TCE+ML
Sbjct: 269 LAKVCSDINKPNGQYVLPNDRLAVMTFISSLPIRKIGGIGKVTERILKEVFGISTCEQML 328
Query: 153 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 212
KGS L A+FS STADFF SVGLGLG T++PQ RFRKSIS+ERTFS +ED+ALL++KLAE
Sbjct: 329 DKGSYLSALFSQSTADFFYSVGLGLGKTDSPQVRFRKSISNERTFSASEDEALLHKKLAE 388
Query: 213 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 272
+AEMLS DMQKEGL GRTLTLKLKTASFEVR RAVTLQ YI+SS+DILKHAS LLKAELP
Sbjct: 389 LAEMLSTDMQKEGLHGRTLTLKLKTASFEVRNRAVTLQNYINSSDDILKHASKLLKAELP 448
Query: 273 VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLID 332
VS+RLIGLRV+QF+ K A DPTQKT+TNF+TSG A++K NS SD+ D +
Sbjct: 449 VSVRLIGLRVSQFSGQKCGATPDPTQKTITNFITSGEANRK-----NSSFSDVTDHDFVT 503
Query: 333 DKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENE--------- 383
D ET +SLD T + DP + D+N ++ + K + EK+ ++
Sbjct: 504 DTETDLSLDGRHTGQLDSRDPFDGDHSLDVNYQSSTL-RKTAGAEKVRTSDNADASSNHS 562
Query: 384 -VSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGT 442
+++L G++ + EG + + +D P+ S Q+ +WLDDYKCSLCG
Sbjct: 563 GCTKVLGGSTSFQGKFEGKNVNNGSNLLEDDRPN------SCQEMIMLWLDDYKCSLCGA 616
Query: 443 EMPPSFIEERQEHSDFHLAERLQKEES 469
E+PPSF+EER EHSDFH AE LQKEES
Sbjct: 617 ELPPSFVEERLEHSDFHFAELLQKEES 643
>gi|79362498|ref|NP_175420.3| DNA polymerase kappa subunit [Arabidopsis thaliana]
gi|46394839|gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana]
gi|332194382|gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana]
Length = 671
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 308/523 (58%), Positives = 378/523 (72%), Gaps = 14/523 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIARKLCP+LIFVP DFTKYT+YSDLTRKVF YDP+F+A SLDEAYLDITEVCRER
Sbjct: 154 MPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDITEVCRER 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDINKPNGQFVL NDR VMTF+
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFV 273
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+FS S+ADFFLSVGLGLG T
Sbjct: 274 SFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALFSQSSADFFLSVGLGLGGT 333
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
NTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM+KEGL RTLTLKLKTASF
Sbjct: 334 NTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDMKKEGLTARTLTLKLKTASF 393
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
E+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR++QF E+ +R SDP+Q T
Sbjct: 394 EIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFVEE-IRN-SDPSQGT 451
Query: 301 LTNFMTSGHASKKI--VGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNS 358
+T F+ +S++ + D +S D N +CL +D+ +VS ET++ D V
Sbjct: 452 ITKFIVQKDSSRQAQDLDDNDSFDLDANKNCLSNDESGNVSFGSHETSSAHLKDVVEYEE 511
Query: 359 LPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNK 418
++ I E + + E Q+LEG+SL+ + +E C D + +
Sbjct: 512 RSQIDSGKV-----IPNQECMKKEERLQILEGDSLLKKYKE--CKPDTSHSMNDNSNATE 564
Query: 419 VGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTH 478
+ Q + W+D YKC LCG E+PPSF+EERQEHSDFHLA+RLQ EE+GS
Sbjct: 565 AVSVFPQTEPLYWIDGYKCVLCGIELPPSFVEERQEHSDFHLAQRLQNEETGSSSSTTPS 624
Query: 479 RERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRN 521
+ R + ++ + + +K++ + HIPI FF K N+N
Sbjct: 625 KRRILGKEK---VNSKPKKQKPDQKDSSKHIPIHAFFTKSNQN 664
>gi|297847332|ref|XP_002891547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337389|gb|EFH67806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 636
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 300/522 (57%), Positives = 359/522 (68%), Gaps = 47/522 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIARKLCP+LIFVP DFTKYT+YSDLTRKVF YDP+F+A SLDEAYLDITEVCRER
Sbjct: 154 MPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDITEVCRER 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDINKPNGQFVL NDR VMTF+
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFV 273
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SSLP+RKIGGIGKVTEHIL+D GI TCEEM+QKG LL A+FS S+ADFFLSVGLGLG T
Sbjct: 274 SSLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGPLLYALFSQSSADFFLSVGLGLGGT 333
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+TPQ R RKSISSERTF+ T D+ LLY KLAEIAEMLS DM+KEGL RTLTLKLKTASF
Sbjct: 334 DTPQVRSRKSISSERTFAATGDERLLYSKLAEIAEMLSHDMKKEGLTARTLTLKLKTASF 393
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
E+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR++QF ++R SDP+Q T
Sbjct: 394 EIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQF-VGEIRN-SDPSQGT 451
Query: 301 LTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 360
+T F+ +S++ + D +S D + +CL +D S+S ET+ D V
Sbjct: 452 ITKFIVQKDSSRQDLDDNDSFDLDASKNCLSND--LSLSFGSHETSYAHLKDVV------ 503
Query: 361 DLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVG 420
E E ++ ++ QE C K N
Sbjct: 504 --------------------EYEERSQIDSEKVIPNQE---CV-------KKKKGRNSFS 533
Query: 421 TSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRE 480
S+N W+D YKC LCG E+PPSF+EERQEH + R K ++ DL + H +
Sbjct: 534 ISAN--GPLYWVDGYKCVLCGIELPPSFVEERQEHLLIFILLRDFKTKN-LDLVLPQHLQ 590
Query: 481 RCVRTQRDHIASHRKRKKQKLFEKEGT-HIPIDMFFAKRNRN 521
+ + KRKKQK +K+ + HIPI FF K N+N
Sbjct: 591 NEGQLTE---KVNSKRKKQKPDQKDSSKHIPIHTFFTKSNQN 629
>gi|242038847|ref|XP_002466818.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor]
gi|241920672|gb|EER93816.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor]
Length = 668
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 287/534 (53%), Positives = 365/534 (68%), Gaps = 32/534 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCP L+FV +F +YT+YS+LTRKVF +YDPNF+A SLDEAYL+IT VC ER
Sbjct: 155 MPGFIGCKLCPGLVFVRPNFERYTHYSELTRKVFQRYDPNFIATSLDEAYLNITNVCIER 214
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR+++Y+E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPNDR AV+TF+
Sbjct: 215 GITGEEVATELRSAIYQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDREAVLTFV 274
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK + LCA+FS +ADFFLSVGLGLG T
Sbjct: 275 STLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKAAFLCALFSEGSADFFLSVGLGLGGT 334
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP+ R RKSIS ERTF+ T D +LL+ KL +AE L+ D+QKEGL+G+TLTLKLKTA F
Sbjct: 335 ETPEQRQRKSISCERTFAATNDSSLLFEKLDSLAENLTDDLQKEGLKGKTLTLKLKTADF 394
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRAVT + YI+S EDIL +A+ LLKAE+P+SLRL+GLR++Q +++K PS TQKT
Sbjct: 395 EVRTRAVTTRNYINSKEDILVYATKLLKAEMPLSLRLMGLRMSQLHDEK-DDPSTSTQKT 453
Query: 301 LTNFM-------TSGHASKKIV---GDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEF 350
L F ++I G N S + L+ D T VS T+ +F
Sbjct: 454 LDIFFRSSNGNSNVNGNVQRITNTSGQDNDSISLTTKEYLVPDAGTGVS-----TDQQDF 508
Query: 351 GDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSL--VLRQEEGSCCDGVEE 408
L+DE+C + S +E +S+ L G L V + + + + E
Sbjct: 509 F----------LHDESCFIPEQRSFGNHSNEAVISKPLGGTKLDDVSSSAKVAPAEKLNE 558
Query: 409 VDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEE 468
D I+P K SS++ DQ W+D Y CS+CG E+PP F EER EHSDFHLAE LQ+EE
Sbjct: 559 PDNLISP--KAVASSSKPDQQSWIDGYICSICGFELPPGFEEERLEHSDFHLAETLQQEE 616
Query: 469 SGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRNF 522
+ R +++ ER +R + +KK K KEG HIPID FF K N+N
Sbjct: 617 AVDGTRHISN-ERLADRERPCSTTPTPKKKLK-SSKEGKHIPIDAFFTKCNKNL 668
>gi|293334565|ref|NP_001167938.1| uncharacterized protein LOC100381652 [Zea mays]
gi|223944997|gb|ACN26582.1| unknown [Zea mays]
Length = 535
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 282/536 (52%), Positives = 365/536 (68%), Gaps = 36/536 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCP+L+FVP +F +YT+YS+LTRKVF +YDPNF+A SLDEAYL+IT VC ER
Sbjct: 20 MPGFIGCKLCPDLVFVPPNFERYTHYSELTRKVFQRYDPNFIATSLDEAYLNITNVCIER 79
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR+++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPNDR AV+TF+
Sbjct: 80 GITGEEVAIELRSAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDREAVLTFV 139
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LPIRKIGGIGKVTE +L V GI+TC+EMLQK + LCA+FS S+ADFFLSVGLGLG T
Sbjct: 140 STLPIRKIGGIGKVTEQMLHQVLGISTCQEMLQKAAFLCALFSESSADFFLSVGLGLGGT 199
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP+ R RKSIS ERTF+ T D +LL++KLA +AE LS D+QKEG +G+TLTLKLKTA F
Sbjct: 200 ETPEQRQRKSISCERTFTATNDSSLLFKKLASLAENLSDDLQKEGFKGKTLTLKLKTADF 259
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRAVT + YI S EDIL +A+ L+KAE+P+SLRL+GLR++Q +++K PS TQKT
Sbjct: 260 EVRTRAVTTRNYIDSKEDILVYATKLIKAEMPISLRLMGLRMSQLHDEK-DDPSTSTQKT 318
Query: 301 LTNFM-----TSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVS---ETNNYEFGD 352
L F S + NS G D ND + KE ++ D T +F
Sbjct: 319 LDIFFRSSNSNSNGNGTTVQRITNSPGQD-NDSISLTTKEEYLAPDAGTSVSTGQQDFF- 376
Query: 353 PVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSL-------VLRQEEGSCCDG 405
L+DE C I E ++ +N+ + + + L V + +
Sbjct: 377 ---------LHDEICF----IPEQQRSLDNDTKEAVLSDPLGGTKSDDVSSSAKVTPTKK 423
Query: 406 VEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQ 465
++E D I+P K +SS++ DQ W+D Y CS+CG E+PP F EER EHSDFHLAE LQ
Sbjct: 424 LDEPDPLISP--KAVSSSSKPDQQSWIDGYICSICGFELPPGFEEERLEHSDFHLAETLQ 481
Query: 466 KEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRN 521
+EE+ R +++ R + +K+ K KEG HIPID FF K N++
Sbjct: 482 QEEAVDGTRHISNESWVAERPRSTAPTPKKKLKSS---KEGKHIPIDSFFTKCNKS 534
>gi|413933667|gb|AFW68218.1| hypothetical protein ZEAMMB73_188779 [Zea mays]
Length = 670
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 281/536 (52%), Positives = 364/536 (67%), Gaps = 36/536 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCP+L+FVP +F +YT+YS+LTRKVF +YDPNF+A SLDEAYL+IT VC ER
Sbjct: 155 MPGFIGCKLCPDLVFVPPNFERYTHYSELTRKVFQRYDPNFIATSLDEAYLNITNVCIER 214
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR+++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPND AV+TF+
Sbjct: 215 GITGEEVAIELRSAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDWEAVLTFV 274
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LPIRKIGGIGKVTE +L V GI+TC+EMLQK + LCA+FS S+ADFFLSVGLGLG T
Sbjct: 275 STLPIRKIGGIGKVTEQMLHQVLGISTCQEMLQKAAFLCALFSESSADFFLSVGLGLGGT 334
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP+ R RKSIS ERTF+ T D +LL++KLA +AE LS D+QKEG +G+TLTLKLKTA F
Sbjct: 335 ETPEQRQRKSISCERTFTATNDSSLLFKKLASLAENLSDDLQKEGFKGKTLTLKLKTADF 394
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRAVT + YI S EDIL +A+ L+KAE+P+SLRL+GLR++Q +++K PS TQKT
Sbjct: 395 EVRTRAVTTRNYIDSKEDILVYATKLIKAEMPISLRLMGLRMSQLHDEK-DDPSTSTQKT 453
Query: 301 LTNFM-----TSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVS---ETNNYEFGD 352
L F S + NS G D ND + KE ++ D T +F
Sbjct: 454 LDIFFRSSNSNSNGNGTTVQRITNSPGQD-NDSISLTTKEEYLAPDAGTSVSTGQQDFF- 511
Query: 353 PVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSL-------VLRQEEGSCCDG 405
L+DE C I E ++ +N+ + + + L V + +
Sbjct: 512 ---------LHDEICF----IPEQQRSLDNDTKEAVLSDPLGGTKSDDVSSSAKVTPTKK 558
Query: 406 VEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQ 465
++E D I+P K +SS++ DQ W+D Y CS+CG E+PP F EER EHSDFHLAE LQ
Sbjct: 559 LDEPDPLISP--KAVSSSSKPDQQSWIDGYICSICGFELPPGFEEERLEHSDFHLAETLQ 616
Query: 466 KEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRN 521
+EE+ R +++ R + +K+ K KEG HIPID FF K N++
Sbjct: 617 QEEAVDGTRHISNESWVAERPRSTAPTPKKKLKS---SKEGKHIPIDSFFTKCNKS 669
>gi|326498699|dbj|BAK02335.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 655
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 280/534 (52%), Positives = 348/534 (65%), Gaps = 45/534 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCP L+FV +F +YT+YS L RKVF +YDPNF+A SLDEAYLDITEVC ER
Sbjct: 155 MPGFIGCKLCPNLVFVRPNFERYTHYSGLARKVFQRYDPNFLATSLDEAYLDITEVCSER 214
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR +V++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPNDR AV TF+
Sbjct: 215 GITGEEVASELRDAVHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDRDAVTTFV 274
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LPIRKIGGIGKVTE +L V GI TC+EMLQK + LCA+FS + DFFLSVGLGLG T
Sbjct: 275 STLPIRKIGGIGKVTEQMLHQVLGITTCQEMLQKAAFLCALFSEGSTDFFLSVGLGLGGT 334
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP+ R RKS+S ERTFS T D LL+ KL +AE L+ DMQKE L+GRTLTLKLKTA+F
Sbjct: 335 ETPEHRLRKSMSCERTFSATNDSRLLFEKLDNLAENLADDMQKECLKGRTLTLKLKTAAF 394
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRA T Q YISS EDIL +A LLKAE+P+SLRL+GLR++ F+ +K + S PTQKT
Sbjct: 395 EVRTRAATAQNYISSKEDILIYAKKLLKAEMPLSLRLMGLRMSHFSGEKDDSTS-PTQKT 453
Query: 301 LTNFM--------TSGHASKKIV----GDQNSLGSDINDDCLIDDKETSVSLDVSETNNY 348
L F T+G + GD + + + D+C I D E V +D ++
Sbjct: 454 LDRFFHSSDINSNTNGTNGASCIDVSGGDNDCNDATMKDECSIHDAEKDVPVDQRPSHEE 513
Query: 349 EFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEE 408
P +S+ + ++E S S K++ +EK +E+ L + + G
Sbjct: 514 NSSVPEGASSV-NYDNEVASSSWKVTRIEKF--DELGDLTSSKASASSSKHG-------- 562
Query: 409 VDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEE 468
Q W+D Y CS+CG E+PP F EERQEHSDFHLAE LQ+EE
Sbjct: 563 -------------------QHFWVDGYICSMCGFELPPCFEEERQEHSDFHLAEMLQQEE 603
Query: 469 SGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRNF 522
+ L+ +ER + +KK K KEG HIPID FF K N+N
Sbjct: 604 AVDGTARLS-KERLAERPCSSATTPTPKKKLK-SSKEGKHIPIDSFFLKCNKNL 655
>gi|115454119|ref|NP_001050660.1| Os03g0616300 [Oryza sativa Japonica Group]
gi|113549131|dbj|BAF12574.1| Os03g0616300 [Oryza sativa Japonica Group]
Length = 617
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 283/538 (52%), Positives = 360/538 (66%), Gaps = 43/538 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL+IT+VC +R
Sbjct: 107 MPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYLNITKVCFDR 166
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPND+ AV TF+
Sbjct: 167 GITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDQEAVTTFV 226
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+FS S+ADFF+SVGLGLG T
Sbjct: 227 STLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCALFSESSADFFISVGLGLGGT 286
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DMQKE L+GRTLTLKLKTA+F
Sbjct: 287 ETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDMQKECLKGRTLTLKLKTAAF 346
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR++Q ++K + S TQKT
Sbjct: 347 EVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLRMSQLRDEKDDS-STQTQKT 405
Query: 301 LTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 360
L F + S I + S+G+ D + T V +Y D + D +L
Sbjct: 406 LDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--------DYLEHDSMDDQAL- 456
Query: 361 DLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGV--EEVDKDITPDNK 418
L+++N S +N + N L+ CDGV +E+D D +
Sbjct: 457 FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM--------CDGVGGKELDDDSSSSKG 503
Query: 419 VGT--------------SSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERL 464
T SS++ DQ W++ Y CS+CG E+PP F EERQEHSDFHLAE L
Sbjct: 504 THTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELPPGFEEERQEHSDFHLAEML 563
Query: 465 QKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRNF 522
Q+EE+ L+ +ER + +K+ K KEG HIPID FF K N+N
Sbjct: 564 QQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKEGKHIPIDAFFHKVNKNL 617
>gi|50838892|gb|AAT81653.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa Japonica Group]
gi|108709841|gb|ABF97636.1| DNA-directed polymerase kappa, putative, expressed [Oryza sativa
Japonica Group]
Length = 616
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/538 (52%), Positives = 360/538 (66%), Gaps = 43/538 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL+IT+VC +R
Sbjct: 106 MPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYLNITKVCFDR 165
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPND+ AV TF+
Sbjct: 166 GITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDQEAVTTFV 225
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+FS S+ADFF+SVGLGLG T
Sbjct: 226 STLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCALFSESSADFFISVGLGLGGT 285
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DMQKE L+GRTLTLKLKTA+F
Sbjct: 286 ETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDMQKECLKGRTLTLKLKTAAF 345
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR++Q ++K + S TQKT
Sbjct: 346 EVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLRMSQLRDEKDDS-STQTQKT 404
Query: 301 LTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 360
L F + S I + S+G+ D + T V +Y D + D +L
Sbjct: 405 LDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--------DYLEHDSMDDQAL- 455
Query: 361 DLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGV--EEVDKDITPDNK 418
L+++N S +N + N L+ CDGV +E+D D +
Sbjct: 456 FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM--------CDGVGGKELDDDSSSSKG 502
Query: 419 VGT--------------SSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERL 464
T SS++ DQ W++ Y CS+CG E+PP F EERQEHSDFHLAE L
Sbjct: 503 THTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELPPGFEEERQEHSDFHLAEML 562
Query: 465 QKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRNF 522
Q+EE+ L+ +ER + +K+ K KEG HIPID FF K N+N
Sbjct: 563 QQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKEGKHIPIDAFFHKVNKNL 616
>gi|222625365|gb|EEE59497.1| hypothetical protein OsJ_11733 [Oryza sativa Japonica Group]
Length = 662
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/538 (52%), Positives = 360/538 (66%), Gaps = 43/538 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL+IT+VC +R
Sbjct: 152 MPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYLNITKVCFDR 211
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPND+ AV TF+
Sbjct: 212 GITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDQEAVTTFV 271
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+FS S+ADFF+SVGLGLG T
Sbjct: 272 STLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCALFSESSADFFISVGLGLGGT 331
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DMQKE L+GRTLTLKLKTA+F
Sbjct: 332 ETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDMQKECLKGRTLTLKLKTAAF 391
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR++Q ++K + S TQKT
Sbjct: 392 EVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLRMSQLRDEKDDS-STQTQKT 450
Query: 301 LTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 360
L F + S I + S+G+ D + T V +Y D + D +L
Sbjct: 451 LDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--------DYLEHDSMDDQAL- 501
Query: 361 DLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGV--EEVDKDITPDNK 418
L+++N S +N + N L+ CDGV +E+D D +
Sbjct: 502 FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM--------CDGVGGKELDDDSSSSKG 548
Query: 419 VGT--------------SSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERL 464
T SS++ DQ W++ Y CS+CG E+PP F EERQEHSDFHLAE L
Sbjct: 549 THTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELPPGFEEERQEHSDFHLAEML 608
Query: 465 QKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRNF 522
Q+EE+ L+ +ER + +K+ K KEG HIPID FF K N+N
Sbjct: 609 QQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKEGKHIPIDAFFHKVNKNL 662
>gi|125544869|gb|EAY91008.1| hypothetical protein OsI_12613 [Oryza sativa Indica Group]
Length = 1626
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 280/533 (52%), Positives = 357/533 (66%), Gaps = 43/533 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL+IT+VC +R
Sbjct: 152 MPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYLNITKVCFDR 211
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPND+ AV TF+
Sbjct: 212 GITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDQEAVTTFV 271
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA+FS S+ADFF+SVGLGLG T
Sbjct: 272 STLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCALFSESSADFFISVGLGLGGT 331
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ DMQKE L+GRTLTLKLKTA+F
Sbjct: 332 ETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADDMQKECLKGRTLTLKLKTAAF 391
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GLR++Q ++K + S TQKT
Sbjct: 392 EVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGLRMSQLRDEKDDS-STQTQKT 450
Query: 301 LTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 360
L F + S I + S+G+ D + T V +Y D + D +L
Sbjct: 451 LDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV--------DYLEHDSMDDQAL- 501
Query: 361 DLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGV--EEVDKDITPDNK 418
L+++N S +N + N L+ CDGV +E+D D +
Sbjct: 502 FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM--------CDGVGGKELDDDSSSSKG 548
Query: 419 VGT--------------SSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERL 464
T SS++ DQ W++ Y CS+CG E+PP F EERQEHSD+HLAE L
Sbjct: 549 THTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFELPPGFEEERQEHSDYHLAEML 608
Query: 465 QKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAK 517
Q+EE+ L+ +ER + +K+ K KEG HIPID FF K
Sbjct: 609 QQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SKEGKHIPIDAFFHK 657
>gi|357115809|ref|XP_003559678.1| PREDICTED: DNA polymerase kappa-like [Brachypodium distachyon]
Length = 626
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 285/545 (52%), Positives = 350/545 (64%), Gaps = 50/545 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCP+L+FV +F +YT+YS+L RKVF +YDPNF A SLDEAYL+ITEVC ER
Sbjct: 109 MPGFIGCKLCPDLVFVRPNFERYTHYSELARKVFQRYDPNFFATSLDEAYLNITEVCIER 168
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR ++++E GLTCS GVAPNR++AKVCSDINKPNGQF+LPN+R AV TF+
Sbjct: 169 GITGEEVASELRGAIHQETGLTCSVGVAPNRMIAKVCSDINKPNGQFILPNERDAVTTFV 228
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LPIRKIGGIGKVTE +L V GI TC++MLQK + LCA+FS + DFFLSVGLGLG T
Sbjct: 229 STLPIRKIGGIGKVTEQMLHQVLGITTCQQMLQKAAFLCALFSEGSTDFFLSVGLGLGGT 288
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP+ R RKS+S ERTFS T D +L + KL +AE L+ D+QKE L+GRTLTLKLKTA+F
Sbjct: 289 ETPEHRLRKSMSCERTFSATNDYSLQFEKLDNLAENLADDLQKECLKGRTLTLKLKTAAF 348
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVRTRA T Q YISS EDIL A LLKAELP+SLRL+GLR++ +K P+ PTQKT
Sbjct: 349 EVRTRAATAQSYISSKEDILICAKKLLKAELPLSLRLMGLRMSHLCGEK-DDPTIPTQKT 407
Query: 301 LTNFM-----------TSGHASKKIV-GDQNSLGSDINDDCLIDDKETSVSLDVSETNNY 348
L F T+G +S GD ++G+ D+CLI D T +S D +
Sbjct: 408 LDRFFRLSDNNSNVNRTNGASSNDASGGDDCNIGATTKDECLIHDAVTDISSD-----QH 462
Query: 349 EFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEE 408
F NDEN + S V ++NEV + N L G+ DG
Sbjct: 463 TFFS----------NDENIFVPEERSSVN--YDNEV---VSSNLLTCDDLGGTKLDGNTS 507
Query: 409 VDKDITPDNKVGTSSN-----------QKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSD 457
K +T K S+ + +Q W+D Y CSLCG E+PP F EERQEHSD
Sbjct: 508 NSK-VTQSEKFDDLSHFTSCKASASSSKPNQQFWVDGYICSLCGFELPPCFEEERQEHSD 566
Query: 458 FHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAK 517
FHLAE LQ+EE+ LT +ER Q +K K KEG HIPID FF K
Sbjct: 567 FHLAELLQQEEALDSSGHLT-KERLAERQSTTPTPKKKLKSS----KEGKHIPIDSFFLK 621
Query: 518 RNRNF 522
N+
Sbjct: 622 HNKKL 626
>gi|8569099|gb|AAF76444.1|AC015445_11 Contains similarity to DINP protein from Homo sapiens gb|AF194973
and contains an IMS PF|00817 domain [Arabidopsis
thaliana]
Length = 435
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 248/279 (88%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIARKLCP+LIFVP DFTKYT+YSDLTRKVF YDP+F+A SLDEAYLDITEVCRER
Sbjct: 154 MPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDITEVCRER 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+SG EIAEELR+SVY E GLTCSAGVA NRLLAKVCSDINKPNGQFVL NDR VMTF+
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFV 273
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+FS S+ADFFLSVGLGLG T
Sbjct: 274 SFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALFSQSSADFFLSVGLGLGGT 333
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
NTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM+KEGL RTLTLKLKTASF
Sbjct: 334 NTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDMKKEGLTARTLTLKLKTASF 393
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIG 279
E+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIG
Sbjct: 394 EIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIG 432
>gi|302775514|ref|XP_002971174.1| hypothetical protein SELMODRAFT_441472 [Selaginella moellendorffii]
gi|300161156|gb|EFJ27772.1| hypothetical protein SELMODRAFT_441472 [Selaginella moellendorffii]
Length = 561
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/305 (60%), Positives = 234/305 (76%), Gaps = 6/305 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA KLCP+L+ + +F KYT+YS+LTR+VF YD NF+A SLDEAYLDITE CR
Sbjct: 161 MPGFIACKLCPDLVLIKPNFEKYTHYSELTRQVFRLYDKNFIARSLDEAYLDITEFCRTE 220
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I+ E+AE LR V+E+ LTCSAGVA NRLLAKVCSDINKPNGQFVL +DR +M F+
Sbjct: 221 SIAPAEVAERLRKDVFEKTKLTCSAGVAANRLLAKVCSDINKPNGQFVLESDREKIMEFV 280
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S LPIRK+ GIGKVTE +L+DV IN C ++++ L+ A+FS + DFFLSVGLG+G++
Sbjct: 281 SKLPIRKVSGIGKVTERLLKDVLSINMCSDLIENRYLISALFSTISTDFFLSVGLGIGAS 340
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
P RKSIS+ERTFS T D +L + L ++AE LS DM KE L+GRTLTLKLKT++F
Sbjct: 341 EAPHEEQRKSISNERTFSPTSDANILGKILGDLAESLSEDMIKENLQGRTLTLKLKTSTF 400
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVR+RAV++Q +ISS ++I A LLKAELP+SLRL+G+RV+QF ED DP+QK+
Sbjct: 401 EVRSRAVSVQHFISSKKEIESLAIKLLKAELPISLRLLGVRVSQFKED------DPSQKS 454
Query: 301 LTNFM 305
+ +F+
Sbjct: 455 IASFL 459
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 431 WLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRI 475
W D +CSLCG + + RQEH DFH A ++Q+++S + L +
Sbjct: 499 WTQDDRCSLCGERISSEYPTLRQEHEDFHFALKIQQQDSVNQLEV 543
>gi|302756981|ref|XP_002961914.1| hypothetical protein SELMODRAFT_403334 [Selaginella moellendorffii]
gi|300170573|gb|EFJ37174.1| hypothetical protein SELMODRAFT_403334 [Selaginella moellendorffii]
Length = 561
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/305 (60%), Positives = 234/305 (76%), Gaps = 6/305 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA KLCP+L+ + +F KYT+YS+LTR+VF YD NF+A SLDEAYLDITE CR
Sbjct: 161 MPGFIACKLCPDLVLIKPNFEKYTHYSELTRQVFRLYDKNFIARSLDEAYLDITEFCRTE 220
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I+ E+AE LR V+E+ LTCSAGVA NRLLAKVCSDINKPNGQFVL +DR +M F+
Sbjct: 221 SIAPAEVAERLRKDVFEKTKLTCSAGVAANRLLAKVCSDINKPNGQFVLESDREKIMEFV 280
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S LPIRK+ GIGKVTE +L+DV IN C ++++ L+ A+FS + DFFLSVGLG+G++
Sbjct: 281 SKLPIRKVSGIGKVTERLLKDVLSINMCSDLIENRYLISALFSTISTDFFLSVGLGIGAS 340
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
P RKSIS+ERTFS T D +L + L ++AE LS DM KE L+GRTLTLKLKT++F
Sbjct: 341 EAPHEEQRKSISNERTFSPTSDANILGKILGDLAESLSEDMIKENLQGRTLTLKLKTSTF 400
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
EVR+RAV++Q +ISS ++I A LLKAELP+SLRL+G+RV+QF ED DP+QK+
Sbjct: 401 EVRSRAVSVQHFISSKKEIESLAIKLLKAELPISLRLLGVRVSQFKED------DPSQKS 454
Query: 301 LTNFM 305
+ +F+
Sbjct: 455 IASFL 459
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 431 WLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRI 475
W D +CSLCG + + RQEH DFH A ++Q+++S + L +
Sbjct: 499 WTQDDRCSLCGERISSEYPTLRQEHEDFHFALKIQQQDSVNQLEV 543
>gi|62319917|dbj|BAD93992.1| hypothetical protein [Arabidopsis thaliana]
Length = 402
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 209/407 (51%), Positives = 273/407 (67%), Gaps = 14/407 (3%)
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
MTF+S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+FS S+ADFFLSVGLG
Sbjct: 1 MTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALFSQSSADFFLSVGLG 60
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
LG TNTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM+KEGL RTLTLKLK
Sbjct: 61 LGGTNTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDMKKEGLTARTLTLKLK 120
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDP 296
TASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR++QF E+ +R SDP
Sbjct: 121 TASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFVEE-IRN-SDP 178
Query: 297 TQKTLTNFMTSGHASKKI--VGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPV 354
+Q T+T F+ +S++ + D +S D N +CL +D+ +VS ET++ D V
Sbjct: 179 SQGTITKFIVQKDSSRQAQDLDDNDSFDLDANKNCLSNDESGNVSFGSHETSSAHLKDVV 238
Query: 355 CDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDIT 414
++ I E + + E Q+LEG+SL+ + +E C D +
Sbjct: 239 EYEERSQIDSGKV-----IPNQECMKKEERLQILEGDSLLKKYKE--CKPDTSHSMNDNS 291
Query: 415 PDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLR 474
+ + Q + W+D YKC LCG E+PPSF+EERQEHSDFHLA+RLQ EE+GS
Sbjct: 292 NATEAVSVFPQTEPLYWIDGYKCVLCGIELPPSFVEERQEHSDFHLAQRLQNEETGSSSS 351
Query: 475 ILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRN 521
+ R + ++ + + +K++ + HIPI FF K N+N
Sbjct: 352 TTPSKRRILGKEK---VNSKPKKQKPDQKDSSKHIPIHAFFTKSNQN 395
>gi|224060812|ref|XP_002300273.1| predicted protein [Populus trichocarpa]
gi|222847531|gb|EEE85078.1| predicted protein [Populus trichocarpa]
Length = 323
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/198 (88%), Positives = 184/198 (92%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIARKLCPELIFVPTDF KYT+YS+LTRKVF KYDPNFMAASLDEA+LDITEVC+ER
Sbjct: 126 MPGFIARKLCPELIFVPTDFKKYTHYSELTRKVFEKYDPNFMAASLDEAHLDITEVCKER 185
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+S EIAEELR V EE GLTCSAGVAPNRLLAKVCSDINKPNGQFVL NDRMAVMTFI
Sbjct: 186 GMSCGEIAEELRKCVNEETGLTCSAGVAPNRLLAKVCSDINKPNGQFVLTNDRMAVMTFI 245
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SSLPIRKIGGIGKVTEHILRD FGI+TCEEMLQKG LLCA+FSHSTADFFLSVGLG+G T
Sbjct: 246 SSLPIRKIGGIGKVTEHILRDAFGISTCEEMLQKGGLLCALFSHSTADFFLSVGLGIGKT 305
Query: 181 NTPQARFRKSISSERTFS 198
+TPQ R RKSISSERTFS
Sbjct: 306 DTPQVRSRKSISSERTFS 323
>gi|384251631|gb|EIE25108.1| DNA polymerase kappa [Coccomyxa subellipsoidea C-169]
Length = 494
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/290 (53%), Positives = 202/290 (69%), Gaps = 13/290 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPGFI R+LCPEL+FV +F KYT + +R VFC +DP+F A SLDEAYLDIT+ CR
Sbjct: 170 MPGFIGRRLCPELLFVKPNFQKYTKAAAASRAVFCLFDPDFEAGSLDEAYLDITDYCRAH 229
Query: 60 ------RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 113
+ +G +AEE+R V EE LTCS G+ PNRLLAKV SD+ KP+GQ+ +P +
Sbjct: 230 ETTGNGKHGAGEAVAEEIRRRVREETLLTCSCGIGPNRLLAKVASDMRKPDGQYAIPGEH 289
Query: 114 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 173
A+ F+ LPIRK+ GIGKV+E +L+ G+ C ++L K LL A+FS +ADFF+ V
Sbjct: 290 SAISRFVDPLPIRKVPGIGKVSEQVLK-ALGVEVCADLLAKRGLLAALFSPISADFFMEV 348
Query: 174 GLGLGST--NTP---QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 228
GLG+G T + P A RK IS ERTF+ A L K AE+AE L+ D+ EGL+G
Sbjct: 349 GLGVGRTQHSAPVEDGAVGRKGISVERTFAALSTPADLEAKCAELAEKLAEDVTGEGLKG 408
Query: 229 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 278
RT+TLKLKT +FEVRTRA TL ++IS+SEDIL+ A LL+AELP+++RL+
Sbjct: 409 RTITLKLKTTNFEVRTRAATLSRHISASEDILREALRLLRAELPITIRLM 458
>gi|326668001|ref|XP_691219.4| PREDICTED: DNA polymerase kappa [Danio rerio]
Length = 902
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/374 (41%), Positives = 207/374 (55%), Gaps = 72/374 (19%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT------ 54
MPGFIA+KLCP+L+ VPT+F KY S R++F +YDPNFM SLDEAYLDIT
Sbjct: 165 MPGFIAKKLCPDLVIVPTNFDKYRAVSAQVREIFSEYDPNFMPMSLDEAYLDITEHLEQR 224
Query: 55 -------------------EVCR-----ER----------------------------GI 62
+ CR ER G
Sbjct: 225 KHWPDTMRTHKICDAKTESDACRSTSESERDELSPVLFEDSPSSSPSLSGADGKAEVFGT 284
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 122
S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P +R VM F+
Sbjct: 285 SAEEAVREMRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPERQVVMDFMKD 344
Query: 123 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 182
LP+RK+ G+GKVTE +L GI TC ++ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 345 LPVRKVSGVGKVTEKMLA-ALGIVTCSQLGQQMALLSLLFSETSWHHFLHISLGLGSTYM 403
Query: 183 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
+ RKS+S+ERTF D Y E+ L+ D+Q+EGL+G+T+TLKLK FEV
Sbjct: 404 ERDSERKSMSTERTFGEMSDAGEQYSLCKELCHDLAQDLQREGLKGKTVTLKLKNVKFEV 463
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVRAPS 294
+T+A TLQ + + E+I A LLK E+ P+ LRL+G+RV+ F EDK
Sbjct: 464 KTKAFTLQYAVCTEEEIFAAAKDLLKVEIDSVSPQPLKLRLMGVRVSGFISTEDK----- 518
Query: 295 DPTQKTLTNFMTSG 308
P QK++ F+ G
Sbjct: 519 KPLQKSIMGFLQKG 532
>gi|159487333|ref|XP_001701677.1| DNA polymerase kappa [Chlamydomonas reinhardtii]
gi|158280896|gb|EDP06652.1| DNA polymerase kappa [Chlamydomonas reinhardtii]
Length = 429
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/291 (48%), Positives = 188/291 (64%), Gaps = 9/291 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI ++LCP+L+FV DF KYT + + R F + DP+F + LDEAYLD+T C
Sbjct: 139 MPGFIGKRLCPKLVFVKPDFAKYTEAAAVVRGAFKQLDPDFESGGLDEAYLDVTGYCTRT 198
Query: 61 GISGIEIAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
SG E A ELR V E GLTCS GVA N++LAK+CSDINKP+GQ+VLP R AVM+F
Sbjct: 199 ATSGEEAATELRRLVKEVSGGLTCSVGVACNKMLAKICSDINKPDGQYVLPASRAAVMSF 258
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTADFFLSVGLGL 177
+ +LP+RKI IGKVTE +L+ V G++TC ++L S L +FS + A FFL LGL
Sbjct: 259 LDTLPVRKIPCIGKVTEQVLQGVLGVSTCGQLLAPASRCRLPLLFSEAAAGFFLEAALGL 318
Query: 178 G------STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
T+T RK +S ERTF A ++ E L ADM +EG+ GR +
Sbjct: 319 APTRHGPKTDTSVDPGRKGLSHERTFRNMSAPAEQEAMAKQLVEALVADMAEEGIEGRNI 378
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
TLKLK ++FEV TRA T+ +++ + DIL LL+AE+PV+LRL+G+R+
Sbjct: 379 TLKLKLSTFEVHTRAATMPRHVRTVSDILPAVLRLLRAEMPVTLRLMGVRM 429
>gi|56160410|gb|AAV80819.1| polymerase kappa isoform 3 [Mus musculus]
Length = 772
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/323 (44%), Positives = 204/323 (63%), Gaps = 15/323 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E + + + G G+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 211 -----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 265
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 266 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 324
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 325 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 384
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 385 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 444
Query: 295 DPTQKTLTNFMTSGHASKKIVGD 317
Q+++ F+ +G+ + GD
Sbjct: 445 ---QRSIIGFLQAGNQALSSTGD 464
>gi|410923427|ref|XP_003975183.1| PREDICTED: DNA polymerase kappa-like [Takifugu rubripes]
Length = 756
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/369 (41%), Positives = 211/369 (57%), Gaps = 66/369 (17%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE----- 55
MPGFIA+KLCP L+ VPT+F KY S R++F YDPNFM SLDEAYLD TE
Sbjct: 150 MPGFIAKKLCPNLVIVPTNFDKYRAVSSEIREIFADYDPNFMPMSLDEAYLDFTEHLEKR 209
Query: 56 -------------------------------------VCRERGISGIEI--------AEE 70
+C E S EI E
Sbjct: 210 QSWPDSLRDENNELPQETTPDVTDLSPVLFDDSPSSSLCCEDAGSAFEIFGTSVEEAVRE 269
Query: 71 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 130
+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP+ R AVM F+ +LP+RK+ G
Sbjct: 270 MRFRIEQKTLLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTREAVMEFVCNLPVRKVSG 329
Query: 131 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 190
IGKV+E +L + GI++C + QK +LL +FS + FL V LGLGS P+ RKS
Sbjct: 330 IGKVSEKLL-NALGISSCSHLGQKMALLSLLFSETAWHHFLQVSLGLGSAFIPRHEERKS 388
Query: 191 ISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 247
+S+ERTF S E++ L R E+ E L+ D++KEGL+G+T+TLKLK +FEV+TRA+
Sbjct: 389 MSTERTFKEMSAAEEQLSLCR---ELCEDLANDLKKEGLKGKTVTLKLKNVNFEVKTRAL 445
Query: 248 TLQKYISSSEDILKHASVLLKAE------LPVSLRLIGLRVTQFNEDKVRAPSDPTQKTL 301
TL ++++++I A LLK E P+ LRL+G+R++ F + P QK++
Sbjct: 446 TLSYPVATADEIFAVAKDLLKTERDNESPQPLRLRLMGVRISAFVSSDEK---QPLQKSI 502
Query: 302 TNFMTSGHA 310
F+ G A
Sbjct: 503 VGFLNPGKA 511
>gi|56160408|gb|AAV80818.1| polymerase kappa isoform 2 [Mus musculus]
Length = 793
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 207/340 (60%), Gaps = 28/340 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
Query: 61 GISG-------IEIAEELRTSVYEEAGLTCS----------AGVAPNRLLAKVCSDINKP 103
I++ L+ ++ L S G+APN +LAKVCSD NKP
Sbjct: 211 QDWPEDKRRYFIKMGNYLKIAMMT-LDLAASNLNLLRPAKPPGIAPNTMLAKVCSDKNKP 269
Query: 104 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 163
NGQ+ + R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS
Sbjct: 270 NGQYQILPSRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFS 328
Query: 164 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK 223
++ +FL + LGLGST+ + RKS+S ERTFS Y E+ L+ D+QK
Sbjct: 329 ETSWHYFLHIALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQK 388
Query: 224 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRL 277
EGL+GRT+T+KLK +FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL
Sbjct: 389 EGLKGRTVTIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRL 448
Query: 278 IGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGD 317
+G+R++ F+ + R Q+++ F+ +G+ + GD
Sbjct: 449 MGVRMSTFSSEDDRKHQ---QRSIIGFLQAGNQALSSTGD 485
>gi|409080276|gb|EKM80636.1| hypothetical protein AGABI1DRAFT_55621 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 619
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 137/317 (43%), Positives = 188/317 (59%), Gaps = 6/317 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI +P FT Y SD +F +YDPN + A DE YL+IT C E
Sbjct: 154 MAGFVAKKLCPDLILIPEHFTTYMETSDQVMSIFKRYDPNMLIAGCDEGYLNITLHCEEH 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S + +E+R V+EE LT SAG+APN++LAK+CSD NKPNGQF L DR ++ F+
Sbjct: 214 SVSAADCVQEMRRIVFEETKLTVSAGIAPNKMLAKICSDRNKPNGQFQLIPDRKTILAFM 273
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK+ GIG+V E +L + GI TC ++ + + + + L LG+ S
Sbjct: 274 RELSVRKVFGIGRVNERLLESI-GIKTCGDIFTHRATIALMDKQFGLHYLLKTYLGISSN 332
Query: 181 NT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
PQ RKSI SERTFS +D +L +KL IA L DM + G G+T+TLK K
Sbjct: 333 EVRPPQREERKSIGSERTFSPLDDGEVLLQKLEHIASELETDMARNGWAGKTITLKYKLD 392
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQ 298
+++V TRA +L +Y+SS ED+ L AE + LRLIGLRVT+ + +RAPS
Sbjct: 393 TYQVFTRAKSLDRYVSSKEDLFSIGRKLFLAEGHLKLRLIGLRVTKLKD--LRAPSPAGI 450
Query: 299 KTLTNFMT-SGHASKKI 314
K T S H +K+
Sbjct: 451 KKFFEATTSSAHTRRKL 467
>gi|303283178|ref|XP_003060880.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457231|gb|EEH54530.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 424
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/286 (48%), Positives = 188/286 (65%), Gaps = 8/286 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+L+FV +DF KY +Y+ LTR+VF +YDP F A SLDEAYL+I+ C +
Sbjct: 140 MPGFIAKKLCPQLVFVDSDFAKYKHYASLTREVFKEYDPQFDAGSLDEAYLEISAYCAGK 199
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ ++AE LR V E+ LTCSAGVAP R LAKVCSD NKP+GQ V+ R AV +
Sbjct: 200 SMTPADVAEALRREVREKTKLTCSAGVAPTRRLAKVCSDANKPDGQMVIEPTRDAVAALL 259
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SSLP+RKIGG+GKV + L FGI TC ++L++ +L+ A+FS +DF L V +G+G
Sbjct: 260 SSLPVRKIGGVGKVLDRTL-AAFGIATCGDLLRERALVVALFSEVQSDFLLGVAIGVGGE 318
Query: 181 NTPQ-----ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
P A RKS+S ERTF+ T D L K+A +AE ++A + +E L RT+TLK+
Sbjct: 319 ARPARPPGWAPQRKSLSQERTFAPTADARALAAKIAALAEEVAAGLARENLLTRTVTLKM 378
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 279
K A FEV R +L + + ++ I A L + E SLRL+G
Sbjct: 379 KRADFEVAQRQTSLPRPTNDAQTISDAALRLFRGEKNTHGSLRLLG 424
>gi|56160422|gb|AAV80825.1| polymerase kappa isoform 9 [Mus musculus]
Length = 467
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 183/284 (64%), Gaps = 12/284 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E + + + G G+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 211 -----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 265
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 266 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 324
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 325 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 384
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLI 278
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+
Sbjct: 385 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLM 428
>gi|56160412|gb|AAV80820.1| polymerase kappa isoform 4 [Mus musculus]
Length = 453
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 133/274 (48%), Positives = 179/274 (65%), Gaps = 6/274 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E + + + G G+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 211 -----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 265
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 266 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 324
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 325 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 384
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 274
EV+TRA T+ IS++E+I A LL+ E+ VS
Sbjct: 385 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVS 418
>gi|255075437|ref|XP_002501393.1| predicted protein [Micromonas sp. RCC299]
gi|226516657|gb|ACO62651.1| predicted protein [Micromonas sp. RCC299]
Length = 410
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 132/281 (46%), Positives = 185/281 (65%), Gaps = 3/281 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGF+A KLCP L+FV DF Y Y+ + R+V+ YD F SLDEAYLD+TE
Sbjct: 132 MPGFVAVKLCPALVFVRQDFELYQKYAAMLREVWRVYDKEFDCGSLDEAYLDVTEFMSRT 191
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+ G E+A +LR+ V + LTCSAGVAP R LAK+CSD NKPNGQFVL R AV++F+
Sbjct: 192 GMDGGEVAAKLRSDVETKTRLTCSAGVAPTRRLAKICSDWNKPNGQFVLERSREAVISFL 251
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S LP+RK+GG+GKV E L F I TC ++ Q +++ AVF+ +T DF SV LG G+
Sbjct: 252 SDLPVRKVGGVGKVLEGKL-SAFQIRTCGQLRQSLNVIAAVFTPATIDFLFSVALGTGTE 310
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
P RK + ERTF+ T D + KL +AE ++ ++QKE L+ +T+TLK+K ++F
Sbjct: 311 QRPPDAQRKGLGHERTFAPTSDPRFIEAKLHGLAEDVAKELQKENLKAQTVTLKIKKSNF 370
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGL 280
EV R +T+ ++++ I + A +LL+ E P +LRL+G+
Sbjct: 371 EVMQRQLTVPSS-NAAKVIAEAAILLLRKERPYGALRLVGV 410
>gi|260821886|ref|XP_002606334.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
gi|229291675|gb|EEN62344.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
Length = 493
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 188/335 (56%), Gaps = 57/335 (17%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI +KLCP+L+ VPT+F KY S R V +YDPNF SLDEAY+D+T+ + R
Sbjct: 137 MPGFIGKKLCPDLVIVPTNFDKYCAVSRQVRDVLGQYDPNFAPMSLDEAYMDLTDYLKLR 196
Query: 61 --------------------------------------------------GISGIEIAEE 70
G E+ E
Sbjct: 197 ESLPEEMRTFYAHVEGCVSKKDSSTENHDEDGMLGETQTNVKMSETSVVFGCDAEEVVRE 256
Query: 71 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 130
+R + + LT SAG+APN +LAKVCSD NKPNGQF +P+DR A+M FI +LP+RK+ G
Sbjct: 257 IRFRIEQRTRLTASAGIAPNMMLAKVCSDQNKPNGQFCIPSDRQAIMDFIRNLPVRKVCG 316
Query: 131 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 190
IGKV L + GI+TC + ++ ++L +FS ++ L V LGLG+T + RKS
Sbjct: 317 IGKVMAQQL-NALGISTCTHLYEQRAVLSLLFSPVSSSHLLRVALGLGATRIERESERKS 375
Query: 191 ISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 250
+S ERTFS A LYRK E+ E L+ D+Q EGL+GRT+T+KLKT +F+V+ R T+
Sbjct: 376 MSVERTFSELSKPADLYRKCWELCEALAKDLQDEGLKGRTITIKLKTVNFDVKQRGQTVP 435
Query: 251 KYISSSEDILKHASVLLKAEL------PVSLRLIG 279
+ +SS ++I A LLK E+ P+ LRL+G
Sbjct: 436 RAVSSMKEIYDVAEELLKMEIQQCQPQPLRLRLMG 470
>gi|443686513|gb|ELT89764.1| hypothetical protein CAPTEDRAFT_151315 [Capitella teleta]
Length = 674
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/405 (36%), Positives = 225/405 (55%), Gaps = 47/405 (11%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+L+ VPT+F KY S +++ +YDPN SLDEAYLDIT+ ER
Sbjct: 171 MPGFIAKKLCPDLVIVPTNFDKYRQVSKDVKEILLQYDPNMCPMSLDEAYLDITQHLAER 230
Query: 61 --------------------GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 100
G+ ++ +E+R + + LT SAG+APN +LAKVCSD
Sbjct: 231 KNFDAEQKTFRTADGEQRMFGVDAEDVVQEIRFRIEVKTQLTASAGIAPNMMLAKVCSDF 290
Query: 101 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 160
NKPNGQ+++P +R AVM F+ LP+RK+ GIG+V+ +L G+ TC ++ +K LL
Sbjct: 291 NKPNGQYLIPFNRQAVMDFVKDLPVRKVCGIGRVSCSML-GAMGVVTCSDLFRKRGLLLK 349
Query: 161 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 220
++S + ++FL V G+GST+ + RKS+S+ERTF+ A L+ K E+ E L D
Sbjct: 350 LYSAISFNYFLRVSAGVGSTSVQRGDDRKSMSTERTFAEINRPAELFAKCYELCEALVED 409
Query: 221 MQKEGLRGRTLTLKLKTASFEVRTRAVTL-------QKYISSSEDILKHASVLLKAELPV 273
++KE L+G+T+TLK+KT + VRT+A +L Q S++ D+L+ L E P+
Sbjct: 410 LKKENLKGKTITLKIKTIKYIVRTKAHSLLNATQDVQLLYSTARDLLRTEIRLCSPE-PL 468
Query: 274 SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDD 333
LRL+G+R++ + + S TQ T+ + +K+ G+D ++
Sbjct: 469 RLRLMGVRMSNLSP---ASKSSDTQITIHQMLKKSRGEQKLPFGAVVSGAD-RFLSFMEQ 524
Query: 334 KETSVSLDV--------------SETNNYEFGDPVCDNSLPDLND 364
K+ V D+ +E +N EF PVCD D D
Sbjct: 525 KDPYVDEDLPGANAFPDEVPHTSTEKDNTEFICPVCDEHPEDCVD 569
>gi|320164110|gb|EFW41009.1| polymerase [Capsaspora owczarzaki ATCC 30864]
Length = 974
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/317 (43%), Positives = 188/317 (59%), Gaps = 33/317 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPG+I KLCPEL+ V +F KY S R++ +YDP+F AASLDEAYLD+T R+
Sbjct: 404 MPGYIGLKLCPELVIVRPNFEKYAQVSTQVREILAQYDPHFTAASLDEAYLDLTRHMRQV 463
Query: 60 --RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 117
G+S ++ E+R + LT SAG+APN +LAK+CSD+NKPNGQ+ LP D +
Sbjct: 464 VPDGVSSADVVREIRGKIQAATQLTASAGIAPNGMLAKICSDLNKPNGQYHLPGDLEQLK 523
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
+F++ LP+RK+ GIGKVTE +L + GI TCE+M L +FS + DFFL V LG
Sbjct: 524 SFVAKLPVRKVSGIGKVTERML-NGLGIVTCEDMFAHRYDLFQLFSPISFDFFLRVSLGA 582
Query: 178 GSTN-----------TPQARF----------RKSISSERTFSVTEDKALLYRKLAEIAEM 216
GS+ TP A F RKSIS ERTF L K E+
Sbjct: 583 GSSRYEEAVKADAVATPTAAFGFGFAVPDNDRKSISVERTFREINTPTALLAKCEELCHK 642
Query: 217 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----- 271
L+AD+ LRGRT+T+KLK F + TRA + Q+YISS+ ++ + AS +L+ E+
Sbjct: 643 LAADVNSCKLRGRTVTVKLKMVDFRMFTRAASSQRYISSASEMFELASKILQDEIQQSER 702
Query: 272 ---PVSLRLIGLRVTQF 285
P+ LRL+G+R++
Sbjct: 703 AGGPLRLRLMGVRLSAL 719
>gi|336384514|gb|EGO25662.1| hypothetical protein SERLADRAFT_437387 [Serpula lacrymans var.
lacrymans S7.9]
Length = 890
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 181/299 (60%), Gaps = 6/299 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCPELI V +FT+Y SD +F +YDPN +AA DE YL+IT C E
Sbjct: 394 MPGFIAKKLCPELILVNINFTRYQEMSDKVMDIFRRYDPNMLAAGCDEGYLNITAYCEEH 453
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +E+R V++E LT SAG+APN++LAK+CSD NKPNGQF LP DR ++ +F+
Sbjct: 454 NLDPQACVQEMRAFVHKETNLTVSAGIAPNKMLAKICSDKNKPNGQFYLPFDRESIKSFM 513
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIR+I G+G+V E +L D GI TC ++ + L + F L + LG+ S
Sbjct: 514 QDLPIRRIPGVGRVNERLL-DAIGIKTCGDIYTHRATLSLMDKQFGLQFLLRIHLGIASN 572
Query: 181 NT-PQARFRKSISSE----RTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
P R + I+S RTFS D+ + KL E+A L D ++ G G+T+TLK
Sbjct: 573 VVEPGKREERKIASAKVHFRTFSTLSDRQQILNKLEEVAAELEDDTERNGWTGKTVTLKY 632
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 294
K +++V TRA + ++IS+ +D L L P+S+RLIGLR+T+ + + +P+
Sbjct: 633 KLNTYQVYTRAKSFDRWISTKKDDLLAIGKELLPSHPLSIRLIGLRITKLKDLRSSSPA 691
>gi|116200590|ref|XP_001226107.1| hypothetical protein CHGG_10840 [Chaetomium globosum CBS 148.51]
gi|88175554|gb|EAQ83022.1| hypothetical protein CHGG_10840 [Chaetomium globosum CBS 148.51]
Length = 632
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 184/291 (63%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCPELI +P +F KY + R++ +YDP F +AS+DEAYL+ITE C E
Sbjct: 174 MAGFVAKKLCPELILLPLNFDKYNAKAAEVREILAEYDPRFESASIDEAYLNITEYCAEH 233
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++ +LR+ ++E+ +T SAG+A N LAK+CS++NKPNGQFVLP DR+A+M+F+
Sbjct: 234 DMDPADVVSKLRSEIHEKTHITVSAGIAANARLAKICSNMNKPNGQFVLPRDRVAIMSFM 293
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L R++ GIG+V E L V GI TC ++ + L +F +F L LGLG T
Sbjct: 294 RDLSCRQVNGIGRVLERELASV-GIKTCGDIYAQRQYLDRLFGQKAYEFLLHCHLGLGRT 352
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
N A RKS+ +ERTF D ALL KL AE L +DM+K +GRTL LK+K
Sbjct: 353 NIQPAEDYERKSVGTERTFRDLGDPALLREKLRRTAEELESDMRKAECKGRTLCLKVKLH 412
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V K + ++D+ ++ + L+ E+P + LRL+GLR TQ
Sbjct: 413 TFEVLTRQVVPPKAVHLADDLYNYSLPMLAKLEQEIPGMKLRLMGLRCTQL 463
>gi|393217821|gb|EJD03310.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 600
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 128/294 (43%), Positives = 181/294 (61%), Gaps = 7/294 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCPELI +P +F KY+ S +F +YDP + A DE YL+IT+ C +
Sbjct: 144 MAGFVAKKLCPELIVIPVNFEKYSEMSRKVMSIFKEYDPTMIVAGCDEGYLNITKYCAQH 203
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GIS + +E+R V+EE LT SAG+A N K+CSD NKPNGQF LP++R A+ F+
Sbjct: 204 GISPEDCVKEMRQKVHEETKLTASAGIASN----KICSDKNKPNGQFALPSERDAITAFM 259
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L IRK+ G+G+V E +L D G+ TC ++ +++ + + + F S LG+ S
Sbjct: 260 RDLSIRKLPGVGRVHERLL-DSIGVKTCGDIYAHRAVIWLMDHYFSKIFLYSAYLGIASN 318
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P R RKSI +ERTF+ D L KL E+AE L DM+ G G+T+TLK K
Sbjct: 319 VVEPYQRDERKSIGAERTFTPISDHEKLLEKLEEVAEELENDMRDNGWAGKTVTLKYKLN 378
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRA 292
+++V TRA + ++I+ ED+ LLK ELP+ LRLIGLRVT+ + + RA
Sbjct: 379 TYQVYTRAKSFNRWITRKEDLFNTGKELLKPELPLCLRLIGLRVTKLKDLRARA 432
>gi|380492100|emb|CCF34847.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 639
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 193/322 (59%), Gaps = 12/322 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCPEL+ + +F KYT + R+V +YDP F +AS+DEAYL+ITE C E+
Sbjct: 163 MAGFVAKKLCPELVMLKLNFEKYTAKAHEVREVLVEYDPRFESASIDEAYLNITEYCTEK 222
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI E E++R ++E+ +T SAG+A N LAK+CS++NKPNGQF+LPNDR ++ F+
Sbjct: 223 GIGPAEAVEQMRREIHEKTKITVSAGIAANAKLAKICSNMNKPNGQFILPNDRSEILRFM 282
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP RK+ GIG+V E L ++ GINTC ++ + L +F +F L+V LGLG T
Sbjct: 283 AKLPPRKVNGIGRVLERQLAEI-GINTCADLYPQRQFLRPLFGDKAYEFLLNVYLGLGRT 341
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL A+ L DM++ ++GRTL LK+K
Sbjct: 342 RIQPAEEYERKSVGTESTFRDMSDPQQLREKLRWTADELEKDMKRAEVKGRTLVLKVKLH 401
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQFNEDKVRAPS 294
++EV TR V L + I ++D+ + +L + E+P ++LRL+GLR T K
Sbjct: 402 TYEVFTRQVVLPRAICLADDLYHFSLPILSKIEEEMPGMTLRLMGLRCTHLVSTK----- 456
Query: 295 DPTQKTLTNFMTSGHASKKIVG 316
P F + G S G
Sbjct: 457 KPDTMAFFGFRSRGSGSAASPG 478
>gi|310795414|gb|EFQ30875.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 635
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 200/340 (58%), Gaps = 18/340 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCPEL+ + +F KYT + R+VF +YDP F +AS+DEAYL+ITE C ++
Sbjct: 163 MAGFVAKKLCPELVMLKLNFEKYTAKAHEVREVFVEYDPRFESASIDEAYLNITEYCTDK 222
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI E E++R +YE+ +T SAG+A N LAK+CS++NKPNGQF+LPNDR ++ F+
Sbjct: 223 GIGPAEAVEQMRREIYEKTKITVSAGIAANAKLAKICSNMNKPNGQFILPNDRSEILRFM 282
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP RK+ G+G+V E L ++ GI TC ++ + L +F +F ++V LGLG T
Sbjct: 283 AKLPPRKVNGVGRVLERQLAEI-GIKTCADLYPQRQFLRPLFGEKAYEFLINVYLGLGRT 341
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL A L DM++ ++GRTL LK K
Sbjct: 342 RIQPAEEYERKSVGTESTFRDMSDPQQLREKLKWTAGELEKDMKRAEVKGRTLVLKAKLH 401
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPS 294
++EV TR V L + I ++D+ A + L+ E+P ++LRL+GLR T K
Sbjct: 402 TYEVLTRQVVLPRAIFLADDLYHFALPILAKLQEEMPGMTLRLMGLRCTHLVSTK----- 456
Query: 295 DPTQKTLTNFMT----SGHASKKIVGDQNSLGSD--INDD 328
P F + SG + K D + G D +NDD
Sbjct: 457 KPDTMAFFGFRSRRSESGTSPVKPSKDNVNAGVDSGLNDD 496
>gi|308805837|ref|XP_003080230.1| DNA-directed polymerase kappa; AtPOLK (ISS) [Ostreococcus tauri]
gi|116058690|emb|CAL54397.1| DNA-directed polymerase kappa; AtPOLK (ISS) [Ostreococcus tauri]
Length = 605
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 196/314 (62%), Gaps = 14/314 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCPEL+FV DFTKY S +R VF +Y+P+++A SLDEAY+++TE C+E
Sbjct: 216 MPGFIAKKLCPELVFVKPDFTKYVKASKESRSVFAQYNPDYIAGSLDEAYIEVTEYCKEH 275
Query: 61 GISGIEIAEELRTSV-YEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
+ IA E+R V GLTCS G A +R LAKVCSD NKP+GQ++L R A +TF
Sbjct: 276 DTTMEAIAAEIREKVKAATGGLTCSVGGACSRRLAKVCSDFNKPDGQYILEPSREAALTF 335
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+RK+ GIGK E +L + F I TC ++L K +L+ A+F+ + + + + LG+G+
Sbjct: 336 LRDLPVRKMYGIGKTLERVLNE-FDIETCGDLLDKRALMLALFTPKSFEHLIGIALGVGT 394
Query: 180 TNTPQAR-----FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
P+ RK +S TF+ T DK L K+ E+A M++ + Q+ L+GR + +K
Sbjct: 395 ERHPREEPDGIAPRKGVSKSETFAATSDKTFLDAKMTEMATMVALECQRLNLKGRMVAVK 454
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE----LPVSLRLIGLRVTQFNEDKV 290
LK ++F+V R TL + + I+ A L++ E + ++LRL+G RV+QF+ ++
Sbjct: 455 LKRSTFDVIQRQTTLAGPTNDVKTIVNSALRLMRNENSIGVDMTLRLVGARVSQFDHEEA 514
Query: 291 RAPSDPTQKTLTNF 304
P D QK + +
Sbjct: 515 -VPED--QKRIDTY 525
>gi|321460481|gb|EFX71523.1| hypothetical protein DAPPUDRAFT_31218 [Daphnia pulex]
Length = 429
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/279 (49%), Positives = 177/279 (63%), Gaps = 9/279 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCPEL+ VPT+F KYT S +KVF YDP F AASLDEAYLD+T+ R
Sbjct: 150 MPGFIAKKLCPELVIVPTNFPKYTEVSRQVQKVFADYDPEFSAASLDEAYLDLTDFLCAR 209
Query: 61 GISGIEI-----AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 115
SG E+ EE+R + E LT SAG+APN +LAKVCSD NKPNGQF+L N + A
Sbjct: 210 KESGAEMTASEAVEEMRAKILESTQLTASAGIAPNGMLAKVCSDKNKPNGQFILGNSKEA 269
Query: 116 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 175
V FI LPIRKI GIG VTE +L + GI+TC ++ + LL +FS S+ D+FL V L
Sbjct: 270 VDEFIKDLPIRKISGIGNVTEQLLGSL-GISTCRDLWNQRELLYLLFSESSYDYFLRVAL 328
Query: 176 GLGSTNTPQA---RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G+GS R RKS+S E TF T D+ L + +++ L+ D+++ G GR++T
Sbjct: 329 GIGSGGGGGDGSERERKSVSCETTFRSTSDRNELCDIIRQLSADLARDLERHGRLGRSVT 388
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 271
LK KT F+V+TR L Y E + K A+ LL + L
Sbjct: 389 LKYKTDKFDVKTRITQLTGYTGDGEVMAKAATSLLPSGL 427
>gi|405974456|gb|EKC39099.1| DNA polymerase kappa [Crassostrea gigas]
Length = 1422
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 202/356 (56%), Gaps = 37/356 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE----- 55
MPGFI +KLCPEL+ VP F KYT S R++ +DPN+ SLDEAYLD T+
Sbjct: 740 MPGFIGKKLCPELVIVPPHFDKYTSVSKEVREILATFDPNYCTVSLDEAYLDFTDHMTKR 799
Query: 56 ----------VCR-----ERGISGIEIAEELRTSVYEEAGLTCS------AGVAPNRLLA 94
+CR ++ ++ E L SV E L G+APN +LA
Sbjct: 800 SGLSEKERTVICRNCDSFDKSFCLCDLNETLGLSVCENGTLKVKDRPSDVCGIAPNMMLA 859
Query: 95 KVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK 154
KVCSD+NKPNGQ+++P+ VM+FI LPIRKI GIGKV+E +L + + TC+++ K
Sbjct: 860 KVCSDMNKPNGQYIIPSTVEDVMSFIRKLPIRKISGIGKVSERML-NAVEVKTCQDLYDK 918
Query: 155 GSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIA 214
LL ++S + ++F+ + LG+GST + RKS+S+ERTFS LY K E+
Sbjct: 919 RGLLYHLYSQISFNYFMRICLGIGSTTVERDGERKSMSTERTFSEMSAPTELYSKCLELC 978
Query: 215 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--- 271
L+ D+Q E L+G+T+++K+KT F+V+TRA +L Y + +E I A LL E+
Sbjct: 979 HSLAEDLQSEALKGKTVSIKIKTVKFDVKTRAFSLPDYTNDAEVIYIAAKDLLCKEMKNV 1038
Query: 272 ---PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSD 324
P+ LRL+G+R++ D+ + Q TL F+ G +KI ++ G D
Sbjct: 1039 HPHPLQLRLMGVRMSTLV-DQTLLSNKKQQNTLIQFVKKG---EKIGKNETHQGKD 1090
>gi|378725578|gb|EHY52037.1| DNA polymerase kappa subunit [Exophiala dermatitidis NIH/UT8656]
Length = 732
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/291 (43%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI +P +F KYT + R + +YDP F +AS+DEAYL+ITE C
Sbjct: 185 MAGFVAKKLCPQLICLPLNFDKYTAKAKEVRAILAEYDPRFESASIDEAYLNITEYCHTH 244
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E+LR V+E+ +T SAG+APN LAK+CS+ NKPNGQF LPNDR AVM+FI
Sbjct: 245 DIDPDAAVEQLRGEVHEKCQITISAGIAPNAKLAKICSNKNKPNGQFRLPNDRAAVMSFI 304
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+LP+RK+ G+G+V E L D GI TC ++ + L +F F + +GLG T
Sbjct: 305 STLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPHRAYLNRLFGEKAFQFLMQTYMGLGRT 363
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF K L KL AE L DM++ G++GRTL LK+K
Sbjct: 364 VVQPAEEYERKSVGTESTFREMSGKQELREKLRHTAEELEKDMERVGVKGRTLVLKVKLH 423
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
++EV TR V + + +ED+ ++ + L+ ++P LRL+GLR T
Sbjct: 424 TYEVFTRQVAPPRAVHRAEDLYTYSLPMLAKLEKDIPDFRLRLMGLRCTHL 474
>gi|449683767|ref|XP_002159424.2| PREDICTED: DNA polymerase kappa-like [Hydra magnipapillata]
Length = 640
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 195/322 (60%), Gaps = 22/322 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+L VP F KY S +++F +YD N++ SLDEAYLD+T+ +
Sbjct: 183 MPGFIAKKLCPQLTIVPLHFEKYQQVSLEIQEIFKEYDSNYLQLSLDEAYLDLTDYIKNN 242
Query: 61 G-ISGIE--------IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 111
+S + + EE+R+ V+E+ LTCSAG+APN +L+K+CSD NKPNGQF L +
Sbjct: 243 APVSEFQTEKDFVEIVVEEIRSKVFEKTKLTCSAGIAPNTMLSKICSDFNKPNGQFYLKS 302
Query: 112 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 171
D + F+ +LPIRKI GIG VTE IL+ F I TC ++ +K ++L +FS ST F+
Sbjct: 303 DYQIISNFVKALPIRKIVGIGHVTEQILKS-FKILTCNDLYEKRNILYLLFSESTFMSFM 361
Query: 172 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
LG+ S Q+ RKS+S ERTF + L + ++AE L+ D+ +E L GRT+
Sbjct: 362 QTALGISSNRLEQSE-RKSMSVERTFQDMSNIEDLLKVCKDVAENLANDLSREKLGGRTI 420
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP------VSLRLIGLRVTQF 285
+LK K ++F + R+ T + IS++ED+ + LL E+ LRL+G+RVT
Sbjct: 421 SLKYKLSTFVTKQRSKTFSELISNAEDLFTISKELLLNEIKNHKNGGFVLRLLGIRVTHL 480
Query: 286 NEDKVRAPSDPTQKTLTNFMTS 307
+ K + QKT+ +F +
Sbjct: 481 DNQK-----NFKQKTVDHFFNN 497
>gi|451997376|gb|EMD89841.1| hypothetical protein COCHEDRAFT_1177859 [Cochliobolus
heterostrophus C5]
Length = 606
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 180/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A KLCP+LI VP +F KYT ++ R+V YDPNF +AS DEAYL++TE C E
Sbjct: 174 MAGFVAMKLCPQLICVPMNFQKYTAKAEEVRQVLALYDPNFESASCDEAYLNLTEYCNEH 233
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ E ++R VYE+A +T SAG+A N LAK+CS+INKPNGQF+LP+DR +M F+
Sbjct: 234 RMTAEEAVRQMRADVYEKAKITVSAGIAANAKLAKICSNINKPNGQFLLPSDRQTIMDFM 293
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP RK+ GIG+V E L D G+ TC ++ + L +F F + LGLG T
Sbjct: 294 RTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLAKLFGQKAFQFLMQCYLGLGRT 352
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+A RKS+ +E TF + L KL +AE L D+++ +GRTL +K+K
Sbjct: 353 VIKRAEDYERKSVGTETTFKELQSPDALREKLRFVAEELEGDLKRTEYKGRTLCIKIKLH 412
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 285
++EV TR T + +ED+ K++ +L+ E+P + LRL+GLRVT
Sbjct: 413 TYEVHTRQTTPPFAVHKAEDLYKYSLPMLEKLMKEIPNMRLRLMGLRVTHI 463
>gi|452989492|gb|EME89247.1| hypothetical protein MYCFIDRAFT_213583 [Pseudocercospora fijiensis
CIRAD86]
Length = 663
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 184/301 (61%), Gaps = 8/301 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A KLCP+LI +P +F KYT + R V +YDP F +AS+DEAYL+IT C E
Sbjct: 185 MAGFVADKLCPQLIHIPLNFEKYTAKAKEVRAVLEQYDPRFESASIDEAYLNITNYCEEH 244
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
IS + ++R V+EE +T SAG+A N LAK+CS+ NKPNGQF L ++R A+M F+
Sbjct: 245 NISPEDAVSQMRAQVFEETMITISAGIAANAKLAKICSNKNKPNGQFKLASERTAIMNFM 304
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L D G+ TC ++ ++ L A+F T +F + V LGLG T
Sbjct: 305 RDLPTRKVNGIGRVLEREL-DAIGVKTCGDIYEQRHYLNALFGDKTFEFLIGVHLGLGKT 363
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ P A + RKS+ +E TF D L KL + AE L D+Q+ +GRTL LK+K
Sbjct: 364 DVRPAAEYERKSVGTESTFHDMSDPKELRDKLRKTAEELEKDLQRTEFKGRTLCLKIKLH 423
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQFNEDKVRAPS 294
++EV TR + K + +++D+ + +L+ E P + LRL+GLR T K + P+
Sbjct: 424 TYEVFTRQIQPPKAVHTADDLYHYGLAMLQKLEKEFPGMKLRLMGLRCTHLVSMK-KGPT 482
Query: 295 D 295
D
Sbjct: 483 D 483
>gi|451852315|gb|EMD65610.1| hypothetical protein COCSADRAFT_86898 [Cochliobolus sativus ND90Pr]
Length = 610
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A KLCP+LI VP +F KY ++ R+V YDPNF AS DEAYL++T+ C E
Sbjct: 160 MAGFVAMKLCPQLICVPMNFQKYMAKAEEVRQVLALYDPNFENASCDEAYLNLTKYCNEH 219
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++G E ++R VYE+A +T SAG+A N LAK+CS+INKPNGQF+LP+DR +M F+
Sbjct: 220 HMTGEEAVSQMRADVYEKAKITVSAGIAANAKLAKICSNINKPNGQFLLPSDRQTIMEFM 279
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP RK+ GIG+V E L D G+ TC ++ + L +F F + LGLG T
Sbjct: 280 KTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRACLAKLFGQKAFQFLMQCYLGLGRT 338
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+A RKS+ +E TF + L KL +AE L D+++ +GRTL +K+K
Sbjct: 339 VIKRAEDYERKSVGTETTFKELQSPDALREKLRFVAEELEGDLKRTEYKGRTLCIKIKLH 398
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 285
++EV TR T + +ED+ K++ +L+ E+P + LRL+GLRVT
Sbjct: 399 TYEVHTRQTTPPFAVHKAEDLYKYSLPMLEKLMKEIPNMRLRLMGLRVTHI 449
>gi|340518175|gb|EGR48417.1| hypothetical protein TRIREDRAFT_107805 [Trichoderma reesei QM6a]
Length = 649
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+L+ + +F KY ++ R V YDP F +AS+DEAYL+ITE C +
Sbjct: 177 MAGFVAKKLCPQLVLIKPNFHKYGAKAEEVRAVLANYDPRFESASIDEAYLNITEYCDQH 236
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I + E++R V+E+ +T SAG+A N LAK+CS+INKPNGQ+VLP DR A+M F+
Sbjct: 237 DIDPAAVVEQMRIEVHEKTNITVSAGIAANARLAKICSNINKPNGQYVLPRDRSAIMAFM 296
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ G+G+V E L ++ G+ TC ++ ++ L +F T++F LGLG T
Sbjct: 297 RDLPTRKVNGVGRVLERELLEI-GVKTCGDIYEQRQYLHRLFGDKTSEFLFRCYLGLGRT 355
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL AE L DM++ +GRTL +K+K
Sbjct: 356 KIQPAEEYERKSVGTESTFHDMSDPVQLRNKLRSTAEALEQDMRRSECKGRTLCIKIKLH 415
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V L K I +ED+ ++ + L+ E+P + LRL+GLR T
Sbjct: 416 TFEVFTRQVILPKSIYLAEDLYNYSLPMLAKLEHEMPGMKLRLMGLRCTNL 466
>gi|156046767|ref|XP_001589745.1| hypothetical protein SS1G_09467 [Sclerotinia sclerotiorum 1980]
gi|154693862|gb|EDN93600.1| hypothetical protein SS1G_09467 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 562
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 193/327 (59%), Gaps = 19/327 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP+LI VP +F KYT + R + YDP F +AS+DEAYL+ITE C++
Sbjct: 154 MAGFIAKKLCPQLIQVPLNFDKYTAKAQEVRGILVDYDPRFESASIDEAYLNITEYCQKN 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E+LR V+E+ +T SAG+A N +AK+CS+ NKPNGQ+ +PNDR+ +M F+
Sbjct: 214 DIDPEAAVEQLRREVHEKTKVTISAGIAANAKIAKICSNKNKPNGQYRVPNDRIEIMRFM 273
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L G++TC ++ L +F T F + LGLG T
Sbjct: 274 RDLPTRKVNGIGRVFEREL-GAIGVDTCGDIYNVRQYLPKLFGDKTFIFLMQCYLGLGRT 332
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ A RKS+ +E TF +D L KL + AE L DMQ+ +GRTL LK+K
Sbjct: 333 DVKPAEEYTRKSVGTESTFGDMDDPTELRAKLRQTAEELEKDMQRTQFKGRTLVLKVKLK 392
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAP- 293
++EV TR K + S++D+ ++ + L+AE+P +SLRL+GLR T N ++ P
Sbjct: 393 TYEVLTRQAAPSKAVCSADDLYTYSLPMLEKLEAEIPGMSLRLMGLRCT--NLVSIKKPD 450
Query: 294 ---------SDPTQKTLTNFMTSGHAS 311
DPT+ ++N+ + +S
Sbjct: 451 TMAFFGFRKQDPTENGISNYESKSFSS 477
>gi|358381543|gb|EHK19218.1| hypothetical protein TRIVIDRAFT_69218 [Trichoderma virens Gv29-8]
Length = 643
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 178/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI + +F KY + R V YDP F +AS+DEAYL+ITE C E
Sbjct: 175 MAGFVAKKLCPQLILIKPNFHKYGAKAQEVRAVIANYDPRFESASIDEAYLNITEYCDEH 234
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ + E++R V+E+ +T SAG+A N LAK+CS+INKPNGQ+VLP DR ++M F+
Sbjct: 235 NMDPAAVVEQMRKEVHEKTSITVSAGIAANARLAKICSNINKPNGQYVLPRDRNSIMAFM 294
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L ++ G+ TC ++ ++ L +F + F L LGLG T
Sbjct: 295 RDLPTRKVNGIGRVLERELLEI-GVKTCGDLYEQRQYLNRLFGEKYSVFLLRCYLGLGRT 353
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D A L KL AE L D++K +GRTL +K+K
Sbjct: 354 KIQPAEEYERKSVGTESTFHDISDPAKLRDKLRSTAEALEKDLKKNECKGRTLCIKIKLH 413
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V L K I +ED+ ++ + L+ E+P + LRL+GLR T
Sbjct: 414 TFEVYTRQVVLPKSIHLAEDLYNYSLPMLAKLEQEMPGMRLRLMGLRCTHL 464
>gi|390602278|gb|EIN11671.1| IMS-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 608
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 185/315 (58%), Gaps = 8/315 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCPELI VP +Y+ S VF YDPN +AAS DE YL+IT C E
Sbjct: 160 MAGFVAKKLCPELILVPIHHERYSEISQRIMTVFRDYDPNMLAASCDEGYLNITSYCAEH 219
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E +++R V+EE LT SAG+APN++LAK NKPNGQ+ LP +R + F+
Sbjct: 220 DLDPDECVQQMRKRVHEEIKLTVSAGIAPNKMLAK-----NKPNGQYHLPFERTEIRDFM 274
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRKI GIG+V+E +L D G+ TC ++ + L + H + + L LG+ S
Sbjct: 275 RDLPIRKIPGIGRVSERLL-DSIGVKTCGDIYPHRATLSLLDKHFSLHWLLQTYLGIASN 333
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P +R RKSI +ERTF+ ++ L +KL E+A L DM + G G+T+TLK K +
Sbjct: 334 VVQPGSREERKSIGAERTFNPISNREKLLQKLDEVAHELEEDMTRGGWVGKTITLKYKLS 393
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQ 298
S++V TRA + ++IS +D+ LL + P+ LRLIGLRVT+ + + D
Sbjct: 394 SYQVFTRAKSFDRWISKKDDLFSARKELLLNDWPLELRLIGLRVTKLKDLRAEEQGDAGI 453
Query: 299 KTLTNFMTSGHASKK 313
K +SG AS +
Sbjct: 454 KRFLKPASSGPASPR 468
>gi|429857424|gb|ELA32293.1| DNA-directed polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 650
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 180/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP L+ + +F KY + R+V +YDP F +AS+DEAYL+ITE C E+
Sbjct: 175 MAGFVAKKLCPSLVMLKPNFEKYNAKAHEVREVLVEYDPRFESASIDEAYLNITEYCTEK 234
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
IS + E++R V+E +T SAG+A N LAK+CS++NKPNGQFVLPNDR +M F+
Sbjct: 235 DISPADAVEQMRREVHERTNITVSAGIAANAKLAKICSNMNKPNGQFVLPNDRTEIMNFM 294
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP RK+ GIG+V E L ++ GI TC ++ L +F +F ++V LGLG T
Sbjct: 295 AKLPPRKVNGIGRVLERQLAEI-GIKTCADIYPYRQFLRQLFGEKAYEFLINVYLGLGRT 353
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL A+ L DM++ +GRTL LK+K
Sbjct: 354 RIQPAEEYERKSVGTESTFRDMSDPQQLREKLRWTADELEKDMKRAECKGRTLVLKVKLH 413
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
++EV TR V L + I ++D+ + A + L+ E+P + LRL+GLR T
Sbjct: 414 TYEVFTRQVVLPRAICLADDLYRFALPILGKLEEEMPEMKLRLMGLRCTHL 464
>gi|346971729|gb|EGY15181.1| DNA polymerase kappa [Verticillium dahliae VdLs.17]
Length = 630
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 183/291 (62%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LIF+ +F KY + R++ YDP F +AS+DEAYL+ITE C +
Sbjct: 154 MAGFVAKKLCPQLIFIKLNFDKYIAKAQEVREIIAHYDPRFESASIDEAYLNITEYCSAK 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
IS + +++R ++E+ +T SAG+A N LAK+CS++NKPNGQ++LP+DR ++M F+
Sbjct: 214 AISPEDAVQQMRREIHEKTKITVSAGIAANAKLAKICSNMNKPNGQYLLPSDRASIMKFM 273
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+SLP RK+ G+G+V E L ++ G+ TC E+ + L +F +F + LGLG T
Sbjct: 274 ASLPPRKVNGVGRVLERQLAEI-GVTTCGEIYEYRQYLNQLFGQKAYEFLIHCYLGLGRT 332
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL A+ L DM++ ++GRTL LK+K
Sbjct: 333 KIQPAEEYERKSVGTESTFHDMSDPTQLTEKLRWTADELEKDMKRAEVKGRTLVLKIKLH 392
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 285
++EV TR V K I ++D+ H+ + L+ E+P + LRL+GLR+T
Sbjct: 393 TYEVFTRQVVTPKSICLADDLFSHSLPILIKLQQEMPDMKLRLMGLRMTHL 443
>gi|393217454|gb|EJD02943.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 718
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 175/296 (59%), Gaps = 5/296 (1%)
Query: 2 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 61
P +IA++LCP+LI VP D+ + S+ V +YDPN A DEAYL+IT+ +
Sbjct: 158 PEYIAKRLCPDLILVPVDYKRVAVVSEKVMDVCKRYDPNMYIAGCDEAYLNITKHLEDHK 217
Query: 62 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 121
+S E EELR+ + EE LT SAG+APN +LAK+CSD NKPNGQF +P R AVM F+
Sbjct: 218 LSAAECVEELRSKICEETNLTASAGIAPNMMLAKICSDRNKPNGQFQMPFTREAVMEFMR 277
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST- 180
LP+RK+ GIG+V E +L + G+ TC ++ +++ + DF LGL T
Sbjct: 278 DLPVRKVPGIGRVGERVL-EAIGVKTCGDIRAARAIIWLMPRKFAVDFLFETHLGLAPTV 336
Query: 181 -NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
Q RKS+ RTF + K +++KL IA +L D++ EG G+ + L K +
Sbjct: 337 VKPYQREERKSVGVSRTFRAVQTKEAIFQKLEYIASLLERDLETEGWVGKIVILTYKLDT 396
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSD 295
F V TR T +++IS ED+ L+K LP+ +RL+GLRVT + +RAP+D
Sbjct: 397 FRVHTRRATFERWISKKEDLFNIGKDLIKPYLPLRVRLLGLRVTDLID--LRAPTD 450
>gi|302908670|ref|XP_003049920.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730856|gb|EEU44207.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP LI + +F KY + R+V YDP F +AS+DEAYL+ITE C+E
Sbjct: 182 MAGFVAKKLCPSLILLKPNFEKYNAKAQEVREVLVNYDPRFESASIDEAYLNITEYCQEH 241
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E E++R+ V+E +T SAG+A N LAK+CS++NKPNGQ+VLP+DR +M F+
Sbjct: 242 QMDPAEAVEQMRSEVHERTNITVSAGIAANAKLAKICSNMNKPNGQYVLPSDRPTIMAFM 301
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ G+G+V E L ++ GI TC ++ + + +F T++F LGLG T
Sbjct: 302 RDLPTRKVNGVGRVLERELLEI-GIKTCGDLYAQRQFINPLFGDKTSEFLFKCYLGLGRT 360
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL AE L DM++ +GRTL LK+K
Sbjct: 361 KIQPAEEYERKSVGTESTFRDMSDPTQLRDKLRWTAEELEKDMKRAECKGRTLCLKVKLH 420
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V L + I ++D+ +A + L+ ++P + LRL+GLR TQ
Sbjct: 421 TFEVFTRQVVLPRAIWLADDLYSYALPILSRLEQDMPGMKLRLMGLRCTQL 471
>gi|330919708|ref|XP_003298724.1| hypothetical protein PTT_09519 [Pyrenophora teres f. teres 0-1]
gi|311327928|gb|EFQ93167.1| hypothetical protein PTT_09519 [Pyrenophora teres f. teres 0-1]
Length = 637
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 178/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A KLCP+LI VP +F KY ++ R+V YDP F +AS DEAYL++TE C+E
Sbjct: 164 MAGFVAMKLCPQLICVPMNFPKYMAKAEEVRQVLALYDPGFESASCDEAYLNLTEYCKEH 223
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ E ++R VYE+A +T SAG+A N LAK+CS+INKPNGQF+LP+DR +M F+
Sbjct: 224 HLTPEEAVSQMRAHVYEKAKITVSAGIAANAKLAKICSNINKPNGQFLLPSDRQTIMEFM 283
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP RK+ GIG+V E L D G+ TC ++ + L +F F LGLG T
Sbjct: 284 RTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLVKLFGQKAFQFLTQCYLGLGRT 342
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+A RKSI +E TF + + KL IAE L D+++ +GRTL +K+K
Sbjct: 343 AIKRAEDYERKSIGTETTFKELQSPDAIRDKLRYIAEELEGDLKRTEYKGRTLCIKIKLH 402
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 285
++EV TR T + ++D+ K++ +L+ E+P + LRLIGLRVT
Sbjct: 403 TYEVHTRQTTPPFAVHKADDLYKYSLPMLEKLMKEIPNMKLRLIGLRVTHI 453
>gi|389740094|gb|EIM81286.1| IMS-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 704
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 194/313 (61%), Gaps = 6/313 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCPE++FVP + +Y+ S +F +YDPN +AAS+DE YL+ITE CR+
Sbjct: 135 MPGFIAQKLCPEMVFVPINMARYSEMSKRVMSIFRQYDPNMLAASVDEGYLNITEYCRDH 194
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI E ++R V +E LT SAG+A N++ +CSD NKPNGQF LP++ A++ F+
Sbjct: 195 GIDPEECVRQMRQQVVDETTLTVSAGIAANKV---ICSDKNKPNGQFRLPHEPQAIIEFM 251
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L IRKI G+G+V E +L + GI TC ++ ++L + H F L LG+ S
Sbjct: 252 RDLSIRKIPGVGRVNERLLESI-GIKTCGDIYTHRAVLSLMDKHFGLVFMLRTHLGIASN 310
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P R RKSI SERTF+ DK + +KL E+A L DM++ G GRT+TLK K
Sbjct: 311 VVQPWEREERKSIGSERTFNTLGDKDKILQKLDEVATELEEDMERGGWTGRTVTLKYKLD 370
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQ 298
+++V TRA + ++I+ +D+ LL ELP+ LRLIGLRVT+ + K + P+ +
Sbjct: 371 TYQVFTRAKSFNRWITKKDDLFATGRDLLLPELPLKLRLIGLRVTKLKDLKKKEPATGIK 430
Query: 299 KTLTNFMTSGHAS 311
+ + TSG +S
Sbjct: 431 RFFESAGTSGPSS 443
>gi|358390626|gb|EHK40031.1| hypothetical protein TRIATDRAFT_42536 [Trichoderma atroviride IMI
206040]
Length = 630
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 177/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI + ++ KY+ + R V YDP F +AS+DEAYL+ITE C E
Sbjct: 161 MASFVAKKLCPQLILIKQNYHKYSAKAQEVRTVLVNYDPRFESASIDEAYLNITEYCEEH 220
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+ E++R V E+ +T SAG+A N LAK+CS+INKPNGQ+VLP +R A+MTF+
Sbjct: 221 GMDPATAVEQMRKEVQEKTSITVSAGIAANARLAKICSNINKPNGQYVLPKERNAIMTFM 280
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L ++ G+ TC ++ + L +F T +F L LGLG T
Sbjct: 281 RDLPTRKVNGIGRVLERELLEI-GVKTCGDLYDQRQYLNRLFGDKTFEFLLRCYLGLGRT 339
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL AE L DM+K +GRTL +K+K
Sbjct: 340 KIQPAEEYERKSVGTESTFHDISDPTKLRDKLRSTAEALEKDMKKAECKGRTLCIKIKLH 399
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V L K I ++D+ ++ + L+ E+P + LRL+GLR T
Sbjct: 400 TFEVYTRQVILPKSIDLADDLYNYSLPMLAKLEQEIPGMKLRLMGLRCTNL 450
>gi|146182193|ref|XP_001470638.1| DNA polymerase IV / kappa [Tetrahymena thermophila]
gi|146143895|gb|EDK31392.1| DNA polymerase IV / kappa [Tetrahymena thermophila SB210]
Length = 950
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 175/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+LI +P +F KY SD +KV +YDPN + LDEA LDIT+ ++
Sbjct: 155 MPGFIAKKLCPQLILIPCNFEKYRKASDQFKKVLYQYDPNLESMGLDEANLDITDYLQQN 214
Query: 61 GISG----IEIAEELRTSVYEE-AGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 115
I+ ++ +R V+E GLTCS G+ PN++LAK+CSD+NKPNGQF L ND
Sbjct: 215 NINSDAQIYDLCHSIRNQVFESTGGLTCSCGIGPNKMLAKICSDMNKPNGQFQLINDEEK 274
Query: 116 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 175
+ F+ LPIRKI GIG VTE IL+ + GI C ++L++ + F + D +S L
Sbjct: 275 IKDFMKDLPIRKIPGIGNVTEQILKGI-GIEKCSQILERVIDIKICFKDLSFDHLVSSAL 333
Query: 176 GLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
G+G + + +KS+S RTF + K+ +I+++L+ D + E G+ L +
Sbjct: 334 GIGRSWHEEETEKKSLSVSRTFQAISTIEEINEKIHQISQLLAEDAKAEQKIGKHLAVSF 393
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQF 285
K F++R++ L KYI SE I K A L+K LP LRLIG+R++Q
Sbjct: 394 KNVKFQMRSKNRMLDKYIQDSEQIEKVAKELVKELLPTEPLRLIGIRLSQL 444
>gi|367047493|ref|XP_003654126.1| hypothetical protein THITE_160571 [Thielavia terrestris NRRL 8126]
gi|347001389|gb|AEO67790.1| hypothetical protein THITE_160571 [Thielavia terrestris NRRL 8126]
Length = 618
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 181/291 (62%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P +F KY + R++ YDP F +AS+DEAYL+ITE C E
Sbjct: 164 MAAFVAKKLCPQLIILPLNFDKYNAKAAEVREILADYDPRFESASIDEAYLNITEYCAEH 223
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++ +LR ++++ +T SAG+A N LAK+CS++NKPNGQFVLP +R A+M F+
Sbjct: 224 DMDPADVVSQLRREIHQKTHVTVSAGIAANARLAKICSNMNKPNGQFVLPRERTAIMAFM 283
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ G+G+V E L V GI TC ++ + L +F T +F L LGLG T
Sbjct: 284 RDLPCRKVNGVGRVLERELASV-GIKTCGDIYAQRQYLAQLFGQKTYEFLLRCYLGLGRT 342
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ P + RKS+ +E TF D L RKL + AE L AD+++ +GRTL LK+K
Sbjct: 343 HIQPADEYERKSVGTESTFREMSDPDQLRRKLRQTAEELEADLRRAECKGRTLCLKVKLH 402
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V K + ++D+ ++ + L+ E+P ++LRL+GLR T
Sbjct: 403 TFEVLTRQVVPPKAVHLADDLYSYSLPMLAKLEQEIPGLTLRLMGLRCTHL 453
>gi|189201936|ref|XP_001937304.1| DNA polymerase kappa [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984403|gb|EDU49891.1| DNA polymerase kappa [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 626
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A KLCP+LI VP +F KY ++ R+V YDP F +AS DEAYL++TE C+E
Sbjct: 164 MAGFVAMKLCPQLICVPMNFQKYMAKAEEVRQVLALYDPGFESASCDEAYLNLTEYCKEH 223
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ E ++R V+E+A +T SAG+A N LAKVCS+INKPNGQF+LP+DR +M F+
Sbjct: 224 HLTPEEAVSQMRADVFEKAKITVSAGIAANAKLAKVCSNINKPNGQFLLPSDRQTIMEFM 283
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP RK+ GIG+V E L D G+ TC ++ + L +F F + LGLG T
Sbjct: 284 RTLPTRKVNGIGRVFEREL-DAVGVKTCGDIYAHRACLAKLFGQKAFQFLMQCYLGLGRT 342
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+A RKS+ +E TF + L KL IAE L D+++ +GRTL +K+K
Sbjct: 343 VIKRAEDYERKSVGTETTFKELQSPDALRGKLRYIAEELEGDLKRTEYKGRTLCIKIKLH 402
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 285
++EV TR T + ++D+ K++ +L+ E+P + LRL+GLRVT
Sbjct: 403 TYEVHTRQTTPPFAVHKADDLYKYSLPMLEKLMKEIPSMKLRLMGLRVTHI 453
>gi|403161534|ref|XP_003321856.2| hypothetical protein PGTG_03393 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171309|gb|EFP77437.2| hypothetical protein PGTG_03393 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 562
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 192/335 (57%), Gaps = 29/335 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G+IA KLCP LIFV DF KY SD K+ +YDPN SLDE ++++T CR+
Sbjct: 104 MAGYIATKLCPRLIFVEPDFKKYNAASDSIMKILRQYDPNLAPNSLDECFMNLTAYCRDH 163
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S E +R V ++ GLT SAG+ PN +AK+ +D+NKPNGQF P R M F+
Sbjct: 164 DLSAAEATSRMRQHVLKDTGLTVSAGIGPNVTIAKIAADLNKPNGQFECPPTRDDAMKFM 223
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ GIG+VTE L +V G+ C ++ ++ S L + S + D LGLG T
Sbjct: 224 KDLPVRKVPGIGRVTERWL-EVLGVKKCGDIWEQRSKLLLMKSEVSFDLLSRAYLGLGQT 282
Query: 181 NT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ Q R+S+ E +F K ++KL E++E L+ D+ + GRTLTLK+K
Sbjct: 283 DIKPSQREDRQSVGCETSFKSLSKKEDFFQKLKELSEELAGDLSRLQFAGRTLTLKIKLD 342
Query: 239 SFEVRTRAVTL----QKYISSSEDILKHASVLLKAELP--------------------VS 274
+FEV +R+VT Q+++SS+ED+ KHA +LL+ E+ +S
Sbjct: 343 TFEVLSRSVTPAILGQRFLSSAEDLYKHAKLLLEREIESRHSSFDQGKKVPGCNGARDIS 402
Query: 275 LRLIGLRVTQFNEDKVRAPSDPT--QKTLTNFMTS 307
+RL+G++V+ + K R P++ QK ++N TS
Sbjct: 403 IRLLGIKVSHLQDQKNRIPANENSLQKWISNPTTS 437
>gi|342878410|gb|EGU79753.1| hypothetical protein FOXB_09715 [Fusarium oxysporum Fo5176]
Length = 643
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 177/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP LI + +F KY + R+V YDP F +AS+DEAYL+ITE C+E
Sbjct: 184 MAGFVAKKLCPSLILLKPNFQKYNAKAHEVREVLVNYDPRFESASIDEAYLNITEYCQEH 243
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E E++R V+E+ +T SAG+A N LAK+CS++NKPNGQ+VL +DR +M F+
Sbjct: 244 QMDPAEAVEQMRREVHEKTNITVSAGIAANAKLAKICSNMNKPNGQYVLSSDRPTIMAFM 303
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L ++ GI TC + + L +F T++F + LGLG T
Sbjct: 304 RDLPTRKVNGIGRVLERELLEI-GIKTCGDFYEHRQYLNPLFGDKTSEFLFTCYLGLGRT 362
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL AE L DM++ +GRTL LK+K
Sbjct: 363 KIQPAEEYERKSVGTESTFRDMSDPTQLREKLRATAEELEQDMKRAECKGRTLCLKVKLH 422
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V L + I ++D+ +A + L+ E+P + LRL+GLR T
Sbjct: 423 TFEVLTRQVVLPRAICLADDLYNYALPILTKLEQEIPGMKLRLMGLRCTHL 473
>gi|240977912|ref|XP_002402838.1| DNA polymerase IV / kappa, putative [Ixodes scapularis]
gi|215491234|gb|EEC00875.1| DNA polymerase IV / kappa, putative [Ixodes scapularis]
Length = 487
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 183/318 (57%), Gaps = 13/318 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI +KLCP L+ V +F KY+ S RKV +YD +FM LDEAYLDIT+
Sbjct: 138 MPGFIGKKLCPSLLIVRPNFNKYSSVSAEVRKVMARYDEDFMPVGLDEAYLDITDHVNAT 197
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+I E+R ++E LT A +APN LAKVCSDI KPN QF LPND AV F+
Sbjct: 198 DADPEDIVREMRKKIFEATQLT--ARIAPNMFLAKVCSDIRKPNNQFRLPNDINAVREFV 255
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SLPIRK+ GIG V E +LR G TC ++ K + + +F ++A F+L LGLG T
Sbjct: 256 RSLPIRKVPGIGAVQEQLLR-ALGAQTCHDLWVKRAAIGHLFGMTSARFYLRAALGLGCT 314
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
KS S E TFS L K E+ E L ++ +G+ GR +TLK+KT +F
Sbjct: 315 EVKCDSACKSKSVEETFSELSSPEALVSKCEELCEQLCEQVEDDGITGRVVTLKIKTVAF 374
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL-------PVSLRLIGLRVTQFNEDKVRAP 293
+V TR+VTL + E I K A LL+ E+ P+ LRL+G+R++ N+ A
Sbjct: 375 DVMTRSVTLDSATNRIEPIKKAALRLLRQEIAAAKPDCPLRLRLMGVRLSGLNDG---AS 431
Query: 294 SDPTQKTLTNFMTSGHAS 311
S +Q TL++F++ A+
Sbjct: 432 SSASQPTLSSFLSGRTAT 449
>gi|322711916|gb|EFZ03489.1| DNA-directed polymerase kappa, putative [Metarhizium anisopliae
ARSEF 23]
Length = 621
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 180/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP LI + F KYT + R++ YDP F +AS+DEAYL+ITE C ++
Sbjct: 164 MAGFVAKKLCPSLILIKPSFPKYTAKAQEIREILADYDPRFESASIDEAYLNITEYCHDK 223
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E+ E++R +Y++ +T SAG+A N LAK+CS++NKPNGQ+VLP+DR ++M F+
Sbjct: 224 DATPAEVIEQMRREIYQKTDITVSAGIAANTKLAKICSNMNKPNGQYVLPSDRTSIMAFM 283
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L ++ G+ TC ++ + L +F T +F + LGLG T
Sbjct: 284 RDLPTRKVNGIGRVLERELLEL-GVRTCGDIYDQRKYLNMLFGDKTFEFLIGCYLGLGRT 342
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKSI +E TF D L KL AE L DM++ +GRTL LK+K
Sbjct: 343 KIQPAEEYERKSIGTESTFRELSDSVKLREKLRWTAEELEKDMERAHCKGRTLCLKIKLH 402
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V + + I S++++ + + L+ E+P + LRL+GLR T
Sbjct: 403 TFEVFTRQVVMPRAICSADELYNFSLPILTKLEQEIPAMKLRLMGLRCTHL 453
>gi|392593740|gb|EIW83065.1| IMS-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 642
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 178/290 (61%), Gaps = 4/290 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+KLCP+LI V + + +Y S+ +F +YDP AA DE YL+IT+ CRE
Sbjct: 153 MPTFIAKKLCPDLIVVYSHYARYNEMSNKVMSIFRRYDPTMYAAGCDEGYLNITKYCREH 212
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S +E+R +V +E LT SAG+APN++LAK+CSD KPNGQF L + + F+
Sbjct: 213 NLSPDACVQEIRETVQKETQLTVSAGIAPNKMLAKICSDKKKPNGQFHLEFEPGVIKDFM 272
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L IRK+ G+G+V E +L + GI+TC +++Q + L + +F L+ LG+ S
Sbjct: 273 KDLSIRKVPGVGRVNERLL-EAIGIHTCGDIIQHRAALYLMDKQFGLNFLLNTHLGIASN 331
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P R RKSI +ERTFS D+ ++ KL ++ L DM G G+T+TLK K
Sbjct: 332 VVQPITRDLRKSIGAERTFSPISDRYRIFAKLEDVCAELEKDMDSGGWTGKTVTLKFKLD 391
Query: 239 SFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
+F+V TRA + +++SS ED+ LL ELPV++RLIGLRVT+ +
Sbjct: 392 TFQVFTRAKSFDRWVSSKKEDLFAIGKELLIPELPVTIRLIGLRVTKLKD 441
>gi|367032254|ref|XP_003665410.1| hypothetical protein MYCTH_2309074 [Myceliophthora thermophila ATCC
42464]
gi|347012681|gb|AEO60165.1| hypothetical protein MYCTH_2309074 [Myceliophthora thermophila ATCC
42464]
Length = 619
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 177/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCPELI +P +F KY + R++ YDP F +AS+DEAYL+ITE C
Sbjct: 167 MASFVAKKLCPELIVLPLNFDKYNAKAAEVREILATYDPRFESASIDEAYLNITEYCLRH 226
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++ +R ++E+ +T SAG+A N LAK+CS+INKPNGQ+VLP DR A+M F+
Sbjct: 227 DMDPADVVSHMRREIHEKTHITVSAGIAANARLAKICSNINKPNGQYVLPRDRTAIMDFM 286
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L V GI TC ++ + L +F T +F L LGLG T
Sbjct: 287 RDLPCRKVNGIGRVLERELGSV-GIKTCGDIYTQRQYLDRLFGQKTYEFLLRCYLGLGRT 345
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
N P + RKS+ +E TF D L KL AE L AD+++ +GRTL LK+K
Sbjct: 346 NIQPADEYERKSVGTESTFREMSDPVQLREKLRRTAEELEADLKRAECKGRTLCLKVKLH 405
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V K + ++D+ K++ + L+ ++P + LRL+GLR T
Sbjct: 406 TFEVLTRQVVPPKAVCLADDLYKYSLPMLAKLEQDIPGLKLRLMGLRCTHL 456
>gi|440470492|gb|ELQ39560.1| DNA polymerase kappa [Magnaporthe oryzae Y34]
gi|440487264|gb|ELQ67065.1| DNA polymerase kappa [Magnaporthe oryzae P131]
Length = 873
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 178/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP L+F+ +F KYT + RKV KYDP F +AS+DEAYL+IT+ C +
Sbjct: 407 MAGFVAKKLCPNLVFIKPNFEKYTAKAQEVRKVLAKYDPRFESASIDEAYLNITQYCADN 466
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E E++R V+ +T S+GVA N LAK+C +INKPNGQ+VLP++R A++ F+
Sbjct: 467 NLEPGEAVEQMRREVHLSTNITVSSGVAANAKLAKICGNINKPNGQYVLPSERPAIIEFM 526
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+P RK+ GIG+V E L+ V G++TC ++ + L +F F + LGLG T
Sbjct: 527 RDMPCRKVNGIGRVLERELQAV-GVSTCGDIYPQRKYLTQLFGEKAFKFLVDCYLGLGRT 585
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
N P + RKS+ +E TF+ + L +KL AE L DM++ ++GRTL +K+K
Sbjct: 586 NIQPAEEYERKSVGTESTFNSISEPGDLRKKLRHTAEELEKDMKRAEVKGRTLVIKIKLH 645
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQF 285
+FEV TR V L + I +ED+ ++ +L K + S RL+GLR T
Sbjct: 646 TFEVYTRQVILPRSIHLAEDLYNYSLPMLARLEKEKPGFSCRLMGLRCTNL 696
>gi|392577344|gb|EIW70473.1| hypothetical protein TREMEDRAFT_68079 [Tremella mesenterica DSM
1558]
Length = 571
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/352 (38%), Positives = 197/352 (55%), Gaps = 11/352 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCPE+I P +F Y S R+V +YD N M ASLDE YL+IT E
Sbjct: 144 MAGFIAKKLCPEIILTPLNFDLYIEASKSVREVLLEYDENLMMASLDEGYLNITSYMAEH 203
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S E+ +LR V + GLT SAG+A NR+LAK+CSD NKPNGQF LP DR +++ F+
Sbjct: 204 CMSATEVVTQLRGQVEAKTGLTISAGIASNRMLAKICSDQNKPNGQFELPFDRSSIVRFM 263
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RKI G G+VTE L + G+ TC ++ K + L A+ LG+
Sbjct: 264 RDLPVRKIPGFGRVTERCL-EGLGVETCGDIYTKRADLLAMDHWFGFQGLCKAHLGIADN 322
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKS+ ERTF D + L EIAE L D+++ G+ +T+K K
Sbjct: 323 KVEPGKREERKSVGCERTFRDKTDNEDIMNTLTEIAEELGKDLERLEYSGKCVTVKYKLH 382
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQ 298
++ +TRA T+ KYIS+S++IL A LL+ ELP+ +RL+G+R++ + +
Sbjct: 383 TYVNKTRAQTVGKYISTSKEILPIAQELLRKELPLRIRLLGIRLSTLKDLTI------PD 436
Query: 299 KTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEF 350
K + NF TS SK+ ++ +G ND+ I+ +V E N +F
Sbjct: 437 KGIRNFFTS--PSKRKRSQEDEIGIIENDEPEIESGLEGSDGEVEELNEEDF 486
>gi|389635609|ref|XP_003715457.1| DNA polymerase kappa [Magnaporthe oryzae 70-15]
gi|351647790|gb|EHA55650.1| DNA polymerase kappa [Magnaporthe oryzae 70-15]
Length = 634
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 178/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP L+F+ +F KYT + RKV KYDP F +AS+DEAYL+IT+ C +
Sbjct: 168 MAGFVAKKLCPNLVFIKPNFEKYTAKAQEVRKVLAKYDPRFESASIDEAYLNITQYCADN 227
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E E++R V+ +T S+GVA N LAK+C +INKPNGQ+VLP++R A++ F+
Sbjct: 228 NLEPGEAVEQMRREVHLSTNITVSSGVAANAKLAKICGNINKPNGQYVLPSERPAIIEFM 287
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+P RK+ GIG+V E L+ V G++TC ++ + L +F F + LGLG T
Sbjct: 288 RDMPCRKVNGIGRVLERELQAV-GVSTCGDIYPQRKYLTQLFGEKAFKFLVDCYLGLGRT 346
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
N P + RKS+ +E TF+ + L +KL AE L DM++ ++GRTL +K+K
Sbjct: 347 NIQPAEEYERKSVGTESTFNSISEPGDLRKKLRHTAEELEKDMKRAEVKGRTLVIKIKLH 406
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQF 285
+FEV TR V L + I +ED+ ++ +L K + S RL+GLR T
Sbjct: 407 TFEVYTRQVILPRSIHLAEDLYNYSLPMLARLEKEKPGFSCRLMGLRCTNL 457
>gi|70982554|ref|XP_746805.1| DNA-directed polymerase kappa [Aspergillus fumigatus Af293]
gi|66844429|gb|EAL84767.1| DNA-directed polymerase kappa, putative [Aspergillus fumigatus
Af293]
gi|159122955|gb|EDP48075.1| DNA-directed polymerase kappa, putative [Aspergillus fumigatus
A1163]
Length = 614
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/322 (39%), Positives = 188/322 (58%), Gaps = 16/322 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL+IT C E
Sbjct: 163 MASFVAKKLCPQLICLPQNYEKYTAKAQEIRVIFAQYDPLFESASIDEAYLNITSYCTEN 222
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E +R + E ++ SAG+A N +AK+CS+ NKPNGQF +PN+R A+M F+
Sbjct: 223 NLDPEEAVSRMRAEILETTKISVSAGIAANAKVAKICSNRNKPNGQFRVPNEREAIMEFM 282
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP+RK+ G+G+V E L D GI TC ++ + +LL +F F + LGLG T
Sbjct: 283 RTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRALLTRLFGEKAFHFLMQCFLGLGRT 341
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +ERTFS DK LL KL + A+ L D+ + +GRTL LK+K A
Sbjct: 342 QIQPVENYERKSVGTERTFSEIGDKQLLREKLWDTAQELEKDLARAECKGRTLVLKVKLA 401
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPS 294
+FEV +R + +S ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 402 TFEVLSRQCQPPRAVSLAKDLYAFSLPMLAKLEKEIPNMKLRLLGLRCTNLVS------- 454
Query: 295 DPTQKTLTNFMTSGHASKKIVG 316
T+K NF + S+ + G
Sbjct: 455 --TKKVDINFFGAASQSRSVAG 474
>gi|171680875|ref|XP_001905382.1| hypothetical protein [Podospora anserina S mat+]
gi|27764332|emb|CAD60612.1| unnamed protein product [Podospora anserina]
gi|170940065|emb|CAP65292.1| unnamed protein product [Podospora anserina S mat+]
Length = 641
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 182/291 (62%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCPELI +P +F KY + R++ YDP F +AS+DEAYL+IT+ C +
Sbjct: 180 MAGFVAKKLCPELILLPLNFDKYNAKAAEVREILADYDPRFESASIDEAYLNITQYCIDH 239
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+ ++ ++R ++E+ +T SAG+A N LAK+CS++NKPNGQ+VLP DR+ +M F+
Sbjct: 240 GMDAADVVSQMRREIHEKTHITVSAGIAANARLAKICSNMNKPNGQYVLPRDRVVIMEFM 299
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+L R++ GIG+V E L GI+TC ++ + + +F T +F L LGLG T
Sbjct: 300 RNLSCRQVNGIGRVLEREL-GTIGISTCGDIYTQRQFIEKLFGEKTYNFLLRCYLGLGRT 358
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ P + RKS+ +ERTF ++ L +L IAE L DM++ +GRTL +K+K
Sbjct: 359 SIQPAEEYERKSVGTERTFRDMDNPTQLREQLRRIAEELEKDMRRAECKGRTLCIKVKLH 418
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 285
++EV TR + K + ++D+ +A V L+ E+P + LRL+GLR T
Sbjct: 419 TYEVLTRQIAPPKAVYLADDLYDYALPMLVKLEQEVPNIKLRLLGLRCTHL 469
>gi|302681639|ref|XP_003030501.1| hypothetical protein SCHCODRAFT_57666 [Schizophyllum commune H4-8]
gi|300104192|gb|EFI95598.1| hypothetical protein SCHCODRAFT_57666 [Schizophyllum commune H4-8]
Length = 600
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 178/300 (59%), Gaps = 11/300 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+KLCP+LI V + +Y+ S +F +YDP AS DE YL+IT+ CRE
Sbjct: 146 MPTFIAKKLCPDLILVKINHERYSEKSKQVMDIFRRYDPTMCPASCDEGYLNITKYCREH 205
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E E+R V+EE+ LT SAG+APN++ +INKPNGQF LP DR ++M+F+
Sbjct: 206 DIGPEECVAEMRRVVHEESDLTVSAGIAPNKV------NINKPNGQFYLPFDRSSIMSFM 259
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L IRKI G+G+V E +L + GI TC ++ + + + H F L LG+ S
Sbjct: 260 RDLSIRKIPGVGRVNERLLESI-GIKTCGDIYTHRATVYLMDKHFGMRFLLQTYLGIASN 318
Query: 181 NT--PQARFRKSISSER--TFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
P+ + RKSI +ER TF+ +K + KL E+A L DM+ G GRT+TLK K
Sbjct: 319 TVRPPERQERKSIGAERRVTFNPISEKDKIMLKLDEVAAELEDDMRTSGWAGRTVTLKFK 378
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDP 296
+++V TRA + ++I+S ED+ LL E P+ LRLIGLRVT+ + + P+ P
Sbjct: 379 LDTYQVFTRAKSFDRWITSKEDLYAAGKELLAPEWPLILRLIGLRVTKLKDLRAPEPTMP 438
>gi|396470133|ref|XP_003838570.1| similar to DNA-directed polymerase kappa [Leptosphaeria maculans
JN3]
gi|312215138|emb|CBX95091.1| similar to DNA-directed polymerase kappa [Leptosphaeria maculans
JN3]
Length = 646
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 186/317 (58%), Gaps = 16/317 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A KLCP+LI VP + KY ++ R+V +YDP F +AS DEAYL++T+ C+E
Sbjct: 180 MAGFVAMKLCPQLICVPMNVAKYMAKAEEVREVLARYDPGFESASCDEAYLNLTQYCKEH 239
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S ++ +LR V+E A +T SAG+A N LAK+ S+ NKPNGQF LP+DR +M F+
Sbjct: 240 HMSPEDVVSQLRADVFERAKITVSAGIAANAKLAKIGSNKNKPNGQFYLPSDRQTIMDFM 299
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
++P RK+ GIG+V E L D G+ TC ++ + L +F F + LGLG T
Sbjct: 300 KTMPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLAKLFGQKAFQFLMQCYLGLGRT 358
Query: 181 NTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+A RKS+ +E TF + L KL +AE L D+++ +GRTL +K+K
Sbjct: 359 KIQRADESHRKSVGTETTFRELQSPDDLRGKLRHVAEELEGDLKRTEYKGRTLCIKIKLH 418
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQFNEDK----- 289
++EV TR +T + ++D+ K++ +L+ +E+P + LRL+GLRVT K
Sbjct: 419 TYEVHTRQITPPFAVHKADDLYKYSLPMLEKFMSEIPNMKLRLMGLRVTHIISTKKPGID 478
Query: 290 ----VRAPSDPTQKTLT 302
+R P+ P T +
Sbjct: 479 FFGRIRPPTAPKPSTTS 495
>gi|119488628|ref|XP_001262764.1| DNA-directed polymerase kappa, putative [Neosartorya fischeri NRRL
181]
gi|119410922|gb|EAW20867.1| DNA-directed polymerase kappa, putative [Neosartorya fischeri NRRL
181]
Length = 614
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 188/322 (58%), Gaps = 16/322 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL+IT C E
Sbjct: 163 MASFVAKKLCPQLICLPQNYEKYTAKAQEIRAIFAQYDPLFESASIDEAYLNITSYCTEN 222
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E +R + E ++ SAG+A N +AK+CS+ NKPNGQF +PN+R A+M F+
Sbjct: 223 NLDPEEAVSRMRAEILETTKISVSAGIAANAKIAKICSNRNKPNGQFRVPNEREAIMEFM 282
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP+RK+ G+G+V E L D GI TC ++ + +LL +F F + LGLG T
Sbjct: 283 RTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRALLTRLFGEKAFHFLIQCFLGLGRT 341
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +ERTF+ DK LL KL + A+ L D+ + +GRTL LK+K A
Sbjct: 342 QVQPVENYERKSVGTERTFNEIGDKQLLREKLWDTAQELEKDLARTECKGRTLVLKVKLA 401
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPS 294
+FEV +R + +S ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 402 TFEVLSRQCQPPRAVSLAKDLYAFSLPMLAKLEKEIPNMKLRLLGLRCTNLVS------- 454
Query: 295 DPTQKTLTNFMTSGHASKKIVG 316
T+K NF + S+ + G
Sbjct: 455 --TKKVDINFFGAASQSRSVAG 474
>gi|325179727|emb|CCA14130.1| DNA polymerase kappa putative [Albugo laibachii Nc14]
Length = 614
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 191/375 (50%), Gaps = 40/375 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPGFI +KLCP+L+F P KY+ + R++F YDPNF A SLDEA LD+T+ RE
Sbjct: 193 MPGFIGKKLCPDLVFTPVRMEKYSAIAQEIRQIFAVYDPNFTAFSLDEAALDLTDYTREH 252
Query: 60 ------------------------RGISGIEIAE------------ELRTSVYEEAGLTC 83
R G E+ E E+R ++EE LT
Sbjct: 253 WRKYVSQLSLKDWNHDGWMQDCETRQEGGHEMPESLTMKIASAIVSEIRQRIFEETQLTA 312
Query: 84 SAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 143
SAG+A N +LAK+CS+I KPNGQF L + ++ FI LP+RK+GGIGKV E IL
Sbjct: 313 SAGIAVNTMLAKICSNIEKPNGQFALEGSKEVILEFIRELPVRKVGGIGKVMEKIL-AAL 371
Query: 144 GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDK 203
I T +E+ + ++L VF TA + L LG+ + RKS S E TF D
Sbjct: 372 NITTMQEVFDRRAVLFHVFKERTATWLLRTCLGIQEQQSESE--RKSYSRETTFKAVSDF 429
Query: 204 ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA 263
L + A I E L+ D+ ++ + R +TLKLK A F VRTR+VTL I S + +L+ A
Sbjct: 430 ESLKQICASICEHLAQDLAEDNVAARNITLKLKCADFSVRTRSVTLNTSIQSCKRLLQVA 489
Query: 264 SVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGS 323
LLK E+P+SLRL+G+R R ++ QK ++ + G+
Sbjct: 490 LDLLKREMPISLRLLGIRAASLIPSVQREETNQVQKRQLTIQDCKMTTEGALDSMKDFGA 549
Query: 324 DINDDCLIDDKETSV 338
+ L +D +V
Sbjct: 550 QEEESALSNDSNKNV 564
>gi|395333149|gb|EJF65527.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 669
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+KLCP+LI + + + +Y+ S+ V +YDPN DE YL+IT C E
Sbjct: 155 MPTFIAKKLCPDLIVLKSHYDRYSEMSNKVMAVCRRYDPNMSVVGCDEGYLNITSYCEEH 214
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPN-RLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G++ E +++R ++EE LT SAG+APN ++LAK+CSD NKPNGQF L + A+ F
Sbjct: 215 GMTPDECVQDMRQKIHEETALTASAGIAPNKKMLAKICSDRNKPNGQFKLDFEARAIKAF 274
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L IRK+ G+G+V E +L + GI TC ++ + +L + F L LG+ S
Sbjct: 275 MRDLSIRKVPGVGRVNERLLESI-GIKTCGDIYAQRGILSLMDKQFGLMFLLQSYLGIAS 333
Query: 180 --TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
Q +KSI +ERTF+ D A ++ KL E+A LS DM + G+T+TLK K
Sbjct: 334 NVVEPWQREEKKSIGAERTFNTLSDTAKIHAKLEEVAAELSKDMTEGQWTGKTITLKYKL 393
Query: 238 ASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 294
+F+V TRA +L K++S +E++ LLK ELP++LRLIGLRVT+ + K A S
Sbjct: 394 NTFQVCTRAKSLDKWLSGRAEELFTLGKELLKPELPLTLRLIGLRVTKLKDLKAEAES 451
>gi|320589524|gb|EFX01985.1| DNA-directed polymerase [Grosmannia clavigera kw1407]
Length = 600
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 178/295 (60%), Gaps = 7/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI + D KY + R+V +YDP F +AS+DEAYL++TE C
Sbjct: 130 MAGFVAKKLCPKLIILKPDHAKYVAKAQEVRRVLARYDPRFESASIDEAYLNVTEYCATH 189
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G E+ +LR V EE +T SAG+A N LAK+CS+INKPNGQF+L N+R A++ F
Sbjct: 190 GADPGEVVAQLRREVLEETRVTVSAGIAANTRLAKICSNINKPNGQFLLQNERSAILDFT 249
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+L RK+ GIG+V E L V GI TC ++ + + +F F + LGLG T
Sbjct: 250 KTLACRKVNGIGRVFERELASV-GIQTCGDIYDQRQYISRLFGEKACHFLVHSYLGLGRT 308
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ P + RKS+ +E TF+ D L ++L A L D+++ +GRTL LKLK
Sbjct: 309 SVQPAEEYERKSVGTESTFTSMSDPGKLRQQLQWTAHELEKDLRRVECKGRTLVLKLKLN 368
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQFNEDK 289
+FEV TR V L + + ++D+ K+AS +L + ELP +S+RL+GLR T +
Sbjct: 369 TFEVHTRQVILSRAVYLADDLYKYASPMLSKMEQELPGISVRLLGLRCTNLTSTR 423
>gi|240276616|gb|EER40127.1| DNA polymerase kappa [Ajellomyces capsulatus H143]
gi|325095340|gb|EGC48650.1| DNA polymerase kappa [Ajellomyces capsulatus H88]
Length = 604
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 174/295 (58%), Gaps = 7/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIARKLCP+LI +P ++ KYT ++ R + +DP F +AS+DEAYL+IT C
Sbjct: 158 MAGFIARKLCPDLILIPQNYQKYTAKAEEIRAILSSFDPQFQSASIDEAYLNITAYCATN 217
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I LR+ V E+ +T SAG+APN +AK+CS+ NKPNGQ +PNDR +M F+
Sbjct: 218 EIEPEVAVRRLRSQVMEQTKVTVSAGIAPNARIAKICSNWNKPNGQHYVPNDRSIIMKFM 277
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S +P+RKI G+G+V E L + G+ C ++ ++ +F F + LGLGST
Sbjct: 278 SEIPVRKINGVGRVFEREL-EAIGVKNCSDIFTHRGVILPLFGEKCYRFLMQCYLGLGST 336
Query: 181 NTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKS+++ERTF D A L L A L DM + RGRTLTLK+K
Sbjct: 337 KIRPVEESERKSVATERTFRDIGDMADLQEMLQLTALELEKDMLRTQFRGRTLTLKVKLH 396
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQFNEDK 289
+FEV +R V L K + S+DI +A + L+ E+P + +RL+GLR T + K
Sbjct: 397 TFEVLSRQVVLPKAVCLSDDIYHYALPMLIRLRKEMPNMKIRLMGLRCTNLSSMK 451
>gi|449546327|gb|EMD37296.1| hypothetical protein CERSUDRAFT_113946 [Ceriporiopsis subvermispora
B]
Length = 671
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/297 (42%), Positives = 172/297 (57%), Gaps = 4/297 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M FIA KLCP LI V +F++Y+ S +F +YDP+ AA DE YL+IT C E
Sbjct: 155 MASFIATKLCPNLILVKNNFSRYSEMSKKVMNIFRRYDPDMCAAGCDEGYLNITPYCTEH 214
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E E+R V+ E LT SAG+APN++LAK+CSD NKPNGQF L A+ F+
Sbjct: 215 NIVPEECVREMREVVHRETDLTVSAGIAPNKMLAKICSDKNKPNGQFKLEFQPQAIKAFM 274
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS- 179
L IRK+ G+G+V E +L + GI TC ++ +L + F L LG+ S
Sbjct: 275 KDLSIRKVPGVGRVNERLLESI-GIKTCGDIYTHRGVLSLMDKQFGLHFLLQTYLGIASN 333
Query: 180 -TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
Q RKSI +ERTFS + + KL E+A L ADMQ +G G+T+TLK K
Sbjct: 334 VVQPWQREERKSIGAERTFSTLWTQEDILNKLEEVAAELEADMQGDGWSGKTITLKYKLD 393
Query: 239 SFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 294
+++V TRA + ++IS+ ED+ LL ELP+ +RLIGLRVT+ + K A S
Sbjct: 394 TYQVFTRAKSFDRWISTRKEDLFAIGKELLMPELPLRVRLIGLRVTKLKDLKKEADS 450
>gi|347833303|emb|CCD49000.1| similar to DNA-directed polymerase kappa [Botryotinia fuckeliana]
Length = 637
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 176/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP+LI VP +F KYT + R++ YDP F +AS+DEAYL+ITE C++
Sbjct: 154 MAGFIAKKLCPQLIQVPLNFDKYTAKAQEVREILVDYDPRFESASIDEAYLNITEYCQKN 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E+LR V+E+ +T SAG+A N +AK+CS+ NKPNGQ+ + N+R+ +M F+
Sbjct: 214 DIDPEAAVEQLRREVHEKTKVTISAGIAANAKIAKICSNYNKPNGQYRVANNRVEIMKFM 273
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L G+ TC ++ L +F F + LGLG T
Sbjct: 274 RDLPTRKVNGIGRVFEREL-GAIGVKTCGDIYNVRHYLPKLFGEKAFIFLMQCYLGLGRT 332
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ A RKS+ +E TF+ D L KL AE L D+Q+ +GRTL LK+K
Sbjct: 333 DVKPAEEYTRKSVGTEGTFNDINDATELRSKLRHTAEELEKDLQRTQFKGRTLVLKVKLK 392
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
++EV TR K + S++D+ K++ + L+AE+P ++LRL+GLR T
Sbjct: 393 TYEVLTRQAAPPKAVFSADDLYKYSLPMLEKLEAEMPGLTLRLMGLRCTNL 443
>gi|145348411|ref|XP_001418642.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578872|gb|ABO96935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 427
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 180/289 (62%), Gaps = 11/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+L+FV DF KY S+ +R VF +Y+P+++A SLDEAY+++TE C +
Sbjct: 139 MPGFIAKKLCPDLVFVKPDFKKYVKASNESRGVFAQYNPDYIAGSLDEAYIEVTEYCEKH 198
Query: 61 GISGIEIAEELRTSVYEE-AGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
+ IAEE+R+ V E GLTCS G +R LAKVCSD NKPNGQ++L R ++ F
Sbjct: 199 DTTMEAIAEEIRSKVKEATGGLTCSVGGGCSRRLAKVCSDFNKPNGQYILGTTRDDILKF 258
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+RK+ GIGK E IL + F I TC ++L K + + A+F+ DF L + LG+G+
Sbjct: 259 LRDLPVRKMYGIGKTLERILNE-FDIKTCGDLLAKRATMLALFTPKAFDFLLGIALGIGT 317
Query: 180 TNTPQ-----ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
P+ + RK +S TF T DKA L K+ E+A ++ + Q+ L+GR + +K
Sbjct: 318 ECHPRETPEGSGGRKGVSKSETFKATADKAYLDAKMTELATEVALECQRLNLKGRMVAVK 377
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIG 279
LK ++F+V R TL + + I+ A L++ E + +LRL+G
Sbjct: 378 LKRSTFDVIQRQTTLAGPTNDVKTIVNSALRLMRNENSIGANMTLRLVG 426
>gi|449298338|gb|EMC94353.1| hypothetical protein BAUCODRAFT_111160 [Baudoinia compniacensis
UAMH 10762]
Length = 628
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A KLCPELI +P +F KYT + R V +YDP F +AS+DEAYL+IT+ C++
Sbjct: 172 MAGFVADKLCPELIHLPLNFEKYTAKAKEVRAVLEQYDPRFESASIDEAYLNITQYCQDH 231
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E ++R V+E A +T SAG+A N LAK+CS+ NKPNGQ+ LP++R +++ F+
Sbjct: 232 DMDPEEAVAQMRAQVFEHAKITISAGIAANAKLAKICSNKNKPNGQYRLPSERTSILIFM 291
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L D GI TC ++ ++ L +F +F +SV LGLG T
Sbjct: 292 RDLPTRKVNGIGRVFEREL-DAIGIKTCGDIYEQRHYLSRLFGDKAFEFLMSVYLGLGRT 350
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ P + RKS+ +E TF D L KL AE L D+++ +GRTL LKLK
Sbjct: 351 DVRPVEEYERKSVGTESTFHDISDPKELRDKLRWTAEELEKDLKRTEFKGRTLVLKLKLH 410
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 285
++EV +R V K + +++D+ + +L+ E+P + LRL+GLR T
Sbjct: 411 TYEVFSRQVQPPKAVYTADDLYHFSLPMLQKVEKEMPGMKLRLMGLRCTHL 461
>gi|225556402|gb|EEH04691.1| DNA polymerase kappa [Ajellomyces capsulatus G186AR]
Length = 604
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 145/401 (36%), Positives = 207/401 (51%), Gaps = 44/401 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIARKLCP+LI +P ++ KY ++ R + +DP F +AS+DEAYL+IT C
Sbjct: 158 MAGFIARKLCPDLILIPQNYQKYAAKAEEIRAILSSFDPQFQSASIDEAYLNITAYCATN 217
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I + LR+ V E+ +T SAG+APN +AK+CS+ NKPNGQ +PNDR +M F+
Sbjct: 218 EIEPEVVVCRLRSQVMEQTRVTVSAGIAPNARIAKICSNWNKPNGQHYVPNDRSIIMKFM 277
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S +P+RKI G+G+V E L + G+ C ++ ++ +F F + LGLGST
Sbjct: 278 SEIPVRKINGVGRVFEREL-EAIGVKNCSDIFTHRGVILPLFGEKCYRFLMQCYLGLGST 336
Query: 181 NTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKS+ +ERTF D A L L A L DM + RGRTLTLK+K
Sbjct: 337 KIRPVEESERKSVGTERTFRDIGDMADLQEMLQLTALELEKDMLRTQFRGRTLTLKVKLH 396
Query: 239 SFEVRTRAVTLQKYISSSEDILKHAS---VLLKAELP-VSLRLIGLRVTQFNEDKVRAPS 294
+FEV +R V L K + S+DI +A + L+ E+P + +RL+GLR T N +R P
Sbjct: 397 TFEVLSRQVVLPKAVCLSDDIYDYAFPMLIRLRKEMPNMKIRLMGLRCT--NLSSMRKPD 454
Query: 295 DPTQKTLTNFMTSGHASK------KIVGDQNSLGS------DIND--DCLIDDKETSVSL 340
NF + S VG+ + G +I D D L D T
Sbjct: 455 -------INFFGGTYTSSVRPQSHSFVGNASCFGEEEFGVLNIEDTHDRLRDSDATRRDW 507
Query: 341 DVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHE 381
D S P+ D + N+I+E+++I E
Sbjct: 508 DTSHR--------------PNGTDTDSPIPNQINELDRIPE 534
>gi|198425156|ref|XP_002120223.1| PREDICTED: similar to polymerase (DNA directed), kappa [Ciona
intestinalis]
Length = 706
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 187/324 (57%), Gaps = 40/324 (12%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP LI VPT+F KY S T+++F +YD NF SLDEA+LDIT+ ++R
Sbjct: 157 MPGFIAKKLCPNLIIVPTNFDKYREVSKETQEIFSEYDENFCGMSLDEAFLDITDHLQKR 216
Query: 61 ----------------------------------GISGIEIAEELRTSVYEEAGLTCSAG 86
G S E+A+E+R + ++ LT SAG
Sbjct: 217 LIYDQEERTFHYHPTLAPTTTSEDTDDKKSSETFGFSAEEVAKEIRFRIQQKTLLTASAG 276
Query: 87 VAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGIN 146
+APN +LAK+ SD+NKPNGQ +R +M FI P+RK+ GIGKVTE +L + G+
Sbjct: 277 IAPNTMLAKIGSDLNKPNGQTFFAPNRDEIMKFIKDFPVRKVNGIGKVTEQLLSSL-GVQ 335
Query: 147 TCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL 206
C ++ + + L +FS ++ FF + LG S RKSIS+ERTFS ++ L
Sbjct: 336 KCGDIYEMRAELMLLFSATSCSFFFRMCLGCSSNILEPDGERKSISTERTFSTISNRDEL 395
Query: 207 YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 266
+ KL E+ L+ADM+K+ ++G+TLTLK K F++ TR+ T+ +++ + I A L
Sbjct: 396 FAKLDELCHSLAADMKKQNVQGKTLTLKTKNVDFQLHTRSKTINVPMTNYQTIFPVAQEL 455
Query: 267 LKAEL-----PVSLRLIGLRVTQF 285
LK E+ +SLRL+G+ +++
Sbjct: 456 LKQEILNANNKLSLRLMGVGLSKL 479
>gi|85092716|ref|XP_959512.1| hypothetical protein NCU02457 [Neurospora crassa OR74A]
gi|28920947|gb|EAA30276.1| hypothetical protein NCU02457 [Neurospora crassa OR74A]
Length = 626
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 177/295 (60%), Gaps = 7/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCPELI +P F KYT + R++ +YDPNF +AS+DEAYL+IT+ C
Sbjct: 179 MAGFVAKKLCPELILLPISFEKYTAKAGEVREIIAEYDPNFESASIDEAYLNITDYCTRH 238
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ + ++R ++E +T SAG+A N LAK+CS++NKPNGQ+VLP++R+A++ F+
Sbjct: 239 AMAPADAVAKMRNDIHERTSITVSAGIAANTRLAKICSNMNKPNGQYVLPSERVAILEFM 298
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L GI+T ++ L +F ++F L LGLG T
Sbjct: 299 RDLPCRKVNGIGRVFEREL-AALGIHTLGDIYSNRQYLRNLFGEKASEFLLHCFLGLGRT 357
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A RKS+ +E TF D L KL +E L D+++ +GRTL LK+K
Sbjct: 358 CVKPAETYERKSVGTESTFRDMSDPTELRNKLRRTSEDLEQDLRRAECKGRTLCLKVKLH 417
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDK 289
+FEV TR L + + + D+ KHA + L+ E+P + LRL+GLR T K
Sbjct: 418 TFEVLTRQTVLPRAVHLATDLYKHALPMLTKLEQEIPGMKLRLMGLRCTNLATTK 472
>gi|443695884|gb|ELT96692.1| hypothetical protein CAPTEDRAFT_210052 [Capitella teleta]
Length = 443
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 181/286 (63%), Gaps = 14/286 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+L+ VPT+F KY S +++ +YDPN SLDEAYLDIT+ ER
Sbjct: 134 MPGFIAKKLCPDLVIVPTNFDKYRQVSKDVKEILLQYDPNMCPMSLDEAYLDITQHLAER 193
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
E + RT+ E+ G+APN +LAKVCSD NKPNGQ+++P +R AVM F+
Sbjct: 194 KNFDAE-QKTFRTADGEQRMF----GIAPNMMLAKVCSDFNKPNGQYLIPFNRQAVMDFV 248
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ GIG+V+ +L G+ TC ++ +K LL ++S + ++FL V G+GST
Sbjct: 249 KDLPVRKVCGIGRVSCSML-GAMGVVTCSDLFRKRGLLLKLYSAISFNYFLRVSAGVGST 307
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S+ERTF+ A L+ K E+ E L D++KE L+G+T+TLK+KT +
Sbjct: 308 SVQRGDDRKSMSTERTFAEINRPAELFAKCYELCEALVEDLKKENLKGKTITLKIKTIKY 367
Query: 241 EVRTRAVTL-------QKYISSSEDILKHASVLLKAELPVSLRLIG 279
VRT+A +L Q S++ D+L+ L E P+ LRL+G
Sbjct: 368 IVRTKAHSLLNATQDVQLLYSTARDLLRTEIRLCSPE-PLRLRLMG 412
>gi|346322241|gb|EGX91840.1| DNA-directed polymerase kappa [Cordyceps militaris CM01]
Length = 641
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 174/291 (59%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+L+ + +F KYT R V YD F +AS+DEAYL+ITE C
Sbjct: 181 MAGFVAKKLCPQLVLIKPNFEKYTAKGKEVRGVLADYDARFESASIDEAYLNITEYCVTH 240
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S E+ E+LR V+E+ +T SAG+A N LAK+CS++NKPNGQ+VL +R +MTFI
Sbjct: 241 NMSAPEVVEQLRKEVHEKTNITVSAGIAANSRLAKICSNLNKPNGQYVLGRERNEIMTFI 300
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RKI GIG+V E L +V GI C ++ + L +F T +F + LGLG T
Sbjct: 301 RDLPTRKIPGIGRVLERELLEV-GIKNCGDIYEHRQYLHRLFGDKTFEFLMGCYLGLGRT 359
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ P + RKS+ +E TF D L KL AE L DM++ +GRTL LK+K
Sbjct: 360 SIQPAEEYERKSVGTESTFREISDPKKLREKLRATAEDLEGDMKRAACKGRTLCLKIKLH 419
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V + + ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 420 TFEVYTRQVVTPRALCLADDLYNFSLPMLTKLEQEMPGMKLRLMGLRCTHL 470
>gi|322700161|gb|EFY91917.1| DNA polymerase kappa [Metarhizium acridum CQMa 102]
Length = 501
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 174/279 (62%), Gaps = 6/279 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP LI + +F KYT + R++ YDP F +AS+DEAYL+ITE C ++
Sbjct: 164 MAGFVAKKLCPSLILIKPNFQKYTAKAQEIREILADYDPRFESASIDEAYLNITEYCHDK 223
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E+ E++R +Y++ +T SAG+A N LAK+CS+INKPNGQ+VLP+DR ++MTF+
Sbjct: 224 HATPAEVIEQMRREIYQKTDITVSAGIAANTKLAKICSNINKPNGQYVLPSDRTSIMTFM 283
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L ++ G+ TC ++ + L +F T +F +S LGLG T
Sbjct: 284 RDLPTRKVNGIGRVLERELLEL-GVRTCGDIYEHRKYLNLLFGDKTFEFLISCYLGLGRT 342
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKSI +E TF D L KL AE L DM++ +GRTL LK+K
Sbjct: 343 RIQPAEEYERKSIGTESTFRELSDPGNLREKLRWTAEELEKDMERVHCKGRTLCLKIKLH 402
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVS 274
+FEV TR + + I S++++ + + L+ E+P S
Sbjct: 403 TFEVLTRQAVMPRAICSADELYNFSLPILTKLEQEMPES 441
>gi|46109048|ref|XP_381582.1| hypothetical protein FG01406.1 [Gibberella zeae PH-1]
Length = 639
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 179/295 (60%), Gaps = 7/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP LI + +F KYT + R+V YDP F +AS+DEAYL+ITE C+E
Sbjct: 182 MAGFVAKKLCPNLILLKPNFQKYTAKAHEVREVLVNYDPRFESASIDEAYLNITEYCQEH 241
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E+ E++R V+++ +T SAG+A N LAK+CS++NKPNGQ+VL +DR ++ F+
Sbjct: 242 QMGPAEVVEQMRREVHQKTNITVSAGIAANARLAKICSNMNKPNGQYVLSSDRPTILAFM 301
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L R + GIG+V E L ++ GI TC ++ + L +F T++F + LGLG T
Sbjct: 302 RDLSTRSVNGIGRVLERELLEI-GIKTCGDLYEHRQYLNPLFGEKTSEFLFTCYLGLGRT 360
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL AE L DM++ +GRTL LK+K
Sbjct: 361 KIQPAEEYERKSVGTESTFRDMSDPTQLREKLRSTAEDLEQDMKRAECKGRTLCLKVKLH 420
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAE--LP-VSLRLIGLRVTQFNEDK 289
+FEV TR L + I ++D+ +A +L K E +P + LRL+GLR T + K
Sbjct: 421 TFEVFTRQAVLPRAIWLADDLYNYALPILTKLEQDMPGMRLRLMGLRCTHLVKTK 475
>gi|336467327|gb|EGO55491.1| hypothetical protein NEUTE1DRAFT_85852 [Neurospora tetrasperma FGSC
2508]
gi|350288043|gb|EGZ69279.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 646
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 177/295 (60%), Gaps = 7/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCPELI +P F KYT + R++ +YDPNF +AS+DEAYL+IT+ C
Sbjct: 179 MAGFVAKKLCPELILLPISFDKYTAKAGEVREIIAEYDPNFESASIDEAYLNITDYCTRH 238
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ + ++R+ ++E +T SAG+A N LAK+CS++NKPNGQ+VLP++R A++ F+
Sbjct: 239 AMAPADAVAKMRSDIHERTSITVSAGIAANTRLAKICSNMNKPNGQYVLPSERGAILEFM 298
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L GI+T ++ L +F ++F + LGLG T
Sbjct: 299 RDLPCRKVNGIGRVFEREL-AALGIHTLGDIYSNRQYLRNLFGEKASEFLVHCFLGLGRT 357
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A RKS+ +E TF V D L KL +E L D+++ +GRTL LK+K
Sbjct: 358 CVKPAETYERKSVGTESTFRVMSDPTELRNKLRRTSEDLEQDLRRAECKGRTLCLKVKLH 417
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDK 289
+FEV TR L + + + D+ HA + L+ E+P + LRL+GLR T K
Sbjct: 418 TFEVLTRQTVLPRAVHLATDLYSHALPMLTKLEQEIPGMKLRLMGLRCTNLATTK 472
>gi|345560473|gb|EGX43598.1| hypothetical protein AOL_s00215g334 [Arthrobotrys oligospora ATCC
24927]
Length = 699
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 128/295 (43%), Positives = 173/295 (58%), Gaps = 7/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G IA KLCP+L+F+P +F KY + R+V +YD F AAS DEAYL+IT
Sbjct: 212 MAGHIAIKLCPQLVFLPLNFEKYNAKAKEVREVLSRYDERFEAASCDEAYLNITPYLERH 271
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E E++R V+E + LT SAG+APN +AK+CS+ NKPNGQF + NDR AVM+F+
Sbjct: 272 KLDPEEAVEKMRQEVFERSKLTVSAGIAPNARIAKICSNKNKPNGQFRVGNDRSAVMSFM 331
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SLP+RK+ G+G+V E L V GI TC ++ L+ +F +F +SV LGLG T
Sbjct: 332 KSLPVRKVNGVGRVFERELEAV-GIKTCGDIYPMRGLILKLFGQKAYEFLISVFLGLGRT 390
Query: 181 --NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKSI SE TF E A L KL + AE L D+ K L+GRTL LK+K
Sbjct: 391 VIRPAEEYIRKSIGSESTFPDLEGTANLREKLRKTAEALEEDLTKTELQGRTLALKVKMF 450
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQFNEDK 289
++E R L I + D+ +A LL + P+ LRL+GLR+T + K
Sbjct: 451 TYEEAIRQKPLPYPIWKAGDVYDYALPLLTKLEEEYKPMKLRLMGLRMTNLSSRK 505
>gi|440633626|gb|ELR03545.1| hypothetical protein GMDG_01296 [Geomyces destructans 20631-21]
Length = 625
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 177/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+ARKLCPELI +P +F KYT + R++ +YDP F +AS+DEAYL+IT C
Sbjct: 158 MAGFVARKLCPELIQLPLNFEKYTAKAREVREIIARYDPRFESASIDEAYLNITTYCESN 217
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E E+LR V+E+ +T SAG+A N LAK+CS++NKPNGQ+ L N+R A++ F+
Sbjct: 218 NIGPDEAVEQLRQEVHEKTKITISAGIAANTKLAKICSNMNKPNGQYRLQNNRGAIIAFM 277
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
++LP RK+ G+G+V E L D G+ TC ++ Q L +F F + LGLG T
Sbjct: 278 NTLPTRKVNGVGRVFEREL-DAVGVKTCGDIYQYRQYLSRLFGEKAFSFLIHCYLGLGRT 336
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+T P + RKS+ +E TF L KL + A+ L DM K ++GRTL LK+K
Sbjct: 337 DTQPAEEYERKSVGTESTFGDLSSHKGLRDKLEKTAQDLEKDMVKAQVKGRTLVLKVKLH 396
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELP---VSLRLIGLRVTQF 285
++EV TR + K + + D+ K++ +L K E ++LRL+GLR T
Sbjct: 397 TYEVLTRQIIPPKAVYLAPDLYKYSLPMLSKLEQEFKGLALRLMGLRCTHL 447
>gi|407922246|gb|EKG15350.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 486
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 172/291 (59%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A KLCP+LI +P +F KYT + R V YDP F +AS+DEAYL+IT C +
Sbjct: 1 MASFVAMKLCPQLICLPLNFEKYTAKAREVRAVLEHYDPRFESASIDEAYLNITAYCEDH 60
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++ +++R V+E+ +T SAG+A N LAK+CS+ NKPNGQF L NDR +M F+
Sbjct: 61 HMDPEDVVQQMRREVHEKTNITVSAGIAANAKLAKICSNKNKPNGQFRLANDRATIMAFM 120
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RKI GIG+V E L D G+ TC ++ + + L +F F + LGLG T
Sbjct: 121 RDLPTRKINGIGRVFEREL-DAIGVKTCGDIYEHRAYLPQLFGEKAFQFLMQCYLGLGRT 179
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF DK L KL AE L D+++ +GRTL LK+K
Sbjct: 180 KIQPAEEYERKSVGTESTFHDMSDKDDLRAKLWHTAEELEKDLERTQFKGRTLVLKVKLH 239
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
++EV TR V I ED+ K++ + L+ E+P + LRL+GLRVT
Sbjct: 240 TYEVLTRQVAPPFAIHKKEDLYKYSLPILAKLEKEIPGLKLRLMGLRVTHL 290
>gi|296413468|ref|XP_002836435.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630254|emb|CAZ80626.1| unnamed protein product [Tuber melanosporum]
Length = 606
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 215/392 (54%), Gaps = 37/392 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
M G+IA++LCP+L+F+P F KYT ++ R++ KYD + AAS+DEA+L+IT +
Sbjct: 157 MAGYIAKQLCPQLVFLPLSFHKYTAKAEEIREILVKYDGRYEAASVDEAFLNITGYLEDH 216
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
R + ++ E+LR V E ++ SAG+APN LAKV S+ NKPNGQF +PNDR AVM F
Sbjct: 217 RDTTPDKVVEQLRREVLEHTKISVSAGIAPNARLAKVASNQNKPNGQFRIPNDREAVMHF 276
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP+R++ G+G+V E L D G+ T ++ +L +FS F L+ LGLG
Sbjct: 277 MRTLPVRRVNGVGRVFEREL-DAVGVRTWGDVFALRGILSKLFSKKAWSFLLNSYLGLGR 335
Query: 180 TNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
T P A + RKS+ +E TF L KL A+ L D+ L GRT+T+K+K
Sbjct: 336 TCIHPVAEYERKSLGTESTFKDLSGPGPLRDKLRSTAQELERDLLAANLAGRTITVKVKL 395
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-----PVSLRLIGLRVTQFN------ 286
+++V +R L + ISS+ED+ HA LL+ EL P +RL+GLRVTQ +
Sbjct: 396 HTYQVHSRQKALHRVISSAEDLYNHALPLLQ-ELEGEFQPFKIRLMGLRVTQLSSTRKGT 454
Query: 287 -------------EDKVRAPSDPTQKTLTNFMTSGHASKKI-----VGDQNSLGSDINDD 328
E + + P + +L ++SGH S+++ + + +L + +N
Sbjct: 455 GKMNFFKNLPQSIEGEAEWEAWP-EGSLDGLLSSGHLSQEVQDEEQLAIEEALNASLNMP 513
Query: 329 CLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 360
++ S + +E P+C SLP
Sbjct: 514 ARDTPQDPSPPPKMVLKERWEC--PICARSLP 543
>gi|242780241|ref|XP_002479554.1| DNA-directed polymerase kappa, putative [Talaromyces stipitatus
ATCC 10500]
gi|218719701|gb|EED19120.1| DNA-directed polymerase kappa, putative [Talaromyces stipitatus
ATCC 10500]
Length = 654
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI +P ++ KY+ ++ R +F +YDP F +AS+DEAYL+IT C E
Sbjct: 167 MAGFVAKKLCPDLICIPQNYEKYSAKAEEIRAIFAQYDPCFESASIDEAYLNITAYCDEN 226
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E +++R + EE +T SAG+A N LAK+ S+ NKPNGQ+ +P++R A+M+F+
Sbjct: 227 NMDPQEAVQQMRARIAEETKITVSAGIATNTKLAKIASNQNKPNGQYFIPSEREAIMSFV 286
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ GIG+V E LR V GI TC ++ + +LL +F F + LGLG T
Sbjct: 287 KDLPVRKVNGIGRVFERELRAV-GIETCGQIYPQRALLKRLFGGKAFQFLMQCYLGLGRT 345
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A RKS+ +E TF+ D + KL A+ L+ D+ + +GRTL LK+K
Sbjct: 346 KIQPAEDYERKSVGTESTFAEISDPDAIRVKLRWAADELAKDLARTQFKGRTLVLKVKLH 405
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V K + ++D+ ++ + L+ E+P + LRL+GLR T
Sbjct: 406 TFEVYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHL 456
>gi|406859501|gb|EKD12565.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 613
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 171/291 (58%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI +P +F KYT + R++ YDP F +AS+DEAYL+ITE C++
Sbjct: 150 MAGFVAKKLCPQLIQIPLNFDKYTAKAQEVREIIVDYDPRFESASIDEAYLNITEYCQKN 209
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S + ++LR V+E+ +T SAG+A N LAK+CS++NKPNGQF LP +R A+M F+
Sbjct: 210 DMSPEDAVQQLRREVHEKTKITISAGIAANAKLAKICSNLNKPNGQFQLPIERSAIMAFM 269
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L D GI TC ++ L +F F + LGLG T
Sbjct: 270 RDLPTRKVNGIGRVFEREL-DAVGIKTCGDIYTYRQYLSKLFGEKAFGFLMQCYLGLGRT 328
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A RKS+ +E TF L +L AE L DM + +GRTL LK+K
Sbjct: 329 RIQPAEDYERKSVGTESTFGEMSKPTELRERLRATAEELEKDMIRTQFKGRTLCLKVKLH 388
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
++EV TR V K + +ED+ + + L+ E P + LRL+GLR T
Sbjct: 389 TYEVFTRQVVPPKAVYLAEDLYNYGVPMLSKLEQEFPGLRLRLMGLRCTHL 439
>gi|402086039|gb|EJT80937.1| DNA polymerase kappa [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 624
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 176/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+K+CPEL+ + +F KY + R+V +YD F +AS+DEAYL+IT+ C +
Sbjct: 160 MAGFVAKKICPELVLLKLNFDKYNAKAAEVREVLAEYDARFESASIDEAYLNITQYCADH 219
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+ ++ +++R V+ +T SAG+A N LAK+CS++NKPNGQFVLPN+R A+M F+
Sbjct: 220 GMGPADVVQQMRAEVHRRTSITVSAGIAANAKLAKICSNMNKPNGQFVLPNERPAIMEFM 279
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SLP RK+ GIG+V E L + G+ TC ++ + L +F F + LGLG T
Sbjct: 280 GSLPCRKVNGIGRVLERELAAI-GVVTCGDVYPERKYLTKLFGEKAFRFLVDCYLGLGRT 338
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TFS L K+ A L DM+K RGRTL LK+K A
Sbjct: 339 IIRPAEEYERKSVGTESTFSDISGGQKLREKMRWTAGELEKDMKKAECRGRTLVLKVKLA 398
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V L + I ++D+ K A + L+ E P ++ RL+GLR T
Sbjct: 399 TFEVLTRQVILPRSIQLADDLYKFALPMLAKLEKEFPRLTCRLLGLRCTNL 449
>gi|239615336|gb|EEQ92323.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis ER-3]
Length = 605
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 171/291 (58%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP+LI +P ++ KYT +D R + YDP F ++SLDEAYL+IT C
Sbjct: 162 MAGFIAKKLCPDLILIPQNYQKYTAKADEIRAILACYDPQFQSSSLDEAYLNITAYCSAN 221
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E LR+ V E+ ++ S G+APN LAK+CS+ NKPNGQ +PN+R A+M F+
Sbjct: 222 EIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNKPNGQHYVPNERSAIMKFM 281
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S++P+R I G+G+V E L D GI C ++ L+ +F F + LGLG T
Sbjct: 282 SAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLFGEKCYRFLMQCYLGLGRT 340
Query: 181 NTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKS+ +ERTF T + A L KL A L DM + +GRTL LK+K
Sbjct: 341 KIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKDMLRTQFKGRTLVLKVKLH 400
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 285
+FEV +R + L K + SED+ ++A V L E P + +RL+GLR T
Sbjct: 401 TFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIRLMGLRCTNL 451
>gi|393245146|gb|EJD52657.1| IMS-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 556
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 193/343 (56%), Gaps = 4/343 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+L+ + +Y+ S + YDP A DE YL+IT C E
Sbjct: 145 MATFVAQKLCPQLVCIHQSHDRYSTVSKEIMTIIRNYDPEMCVAGCDEGYLNITAYCDEN 204
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ + +LR V+E LT SAG+APN LAK+CSD NKPNGQF LP +R ++ F+
Sbjct: 205 DMTPDDCVAQLRREVFEATKLTVSAGIAPNMTLAKICSDKNKPNGQFHLPFERDKIIEFM 264
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ G+G+V E +L D GI TC ++ + + + H + D+ L LGLGST
Sbjct: 265 RDLPIRKVPGVGRVQERML-DSIGIRTCGDVYTHRATIHLLGKHFSLDYLLHAYLGLGST 323
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P AR RKS+ ERTF+ D+ L KL IA L D++ G G+T+TLK K
Sbjct: 324 VVQPGAREERKSVGVERTFNPISDQDQLVAKLENIAHTLEEDLEHGGWAGKTVTLKYKLD 383
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQ 298
+F+ TRA + +Y++ ED+ A LL AE+P+ +RLIG+RVT + K+ A + +
Sbjct: 384 TFQSFTRAKSCPRYVNKKEDLFSIAKELLLAEMPLCIRLIGIRVTNLKDLKI-AENSGIK 442
Query: 299 KTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 341
+ L + S + +K+ + + DD L ETS S D
Sbjct: 443 RFLKHAPGSPNKKRKLSHGELDGVAPAGDDNLKPAAETSGSSD 485
>gi|261188840|ref|XP_002620833.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis SLH14081]
gi|239591975|gb|EEQ74556.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis SLH14081]
Length = 605
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 171/291 (58%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP+LI +P ++ KYT +D R + YDP F ++SLDEAYL+IT C
Sbjct: 162 MAGFIAKKLCPDLILIPQNYQKYTAKADEIRAILACYDPQFQSSSLDEAYLNITAYCSAN 221
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E LR+ V E+ ++ S G+APN LAK+CS+ NKPNGQ +PN+R A+M F+
Sbjct: 222 EIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNKPNGQHYVPNERSAIMKFM 281
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S++P+R I G+G+V E L D GI C ++ L+ +F F + LGLG T
Sbjct: 282 SAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLFGEKCYRFLMQCYLGLGRT 340
Query: 181 NTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKS+ +ERTF T + A L KL A L DM + +GRTL LK+K
Sbjct: 341 KIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKDMLRTQFKGRTLVLKVKLH 400
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 285
+FEV +R + L K + SED+ ++A V L E P + +RL+GLR T
Sbjct: 401 TFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIRLMGLRCTNL 451
>gi|327357690|gb|EGE86547.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis ATCC 18188]
Length = 565
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 171/291 (58%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP+LI +P ++ KYT +D R + YDP F ++SLDEAYL+IT C
Sbjct: 162 MAGFIAKKLCPDLILIPQNYQKYTAKADEIRAILACYDPQFQSSSLDEAYLNITAYCSAN 221
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E LR+ V E+ ++ S G+APN LAK+CS+ NKPNGQ +PN+R A+M F+
Sbjct: 222 EIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNKPNGQHYVPNERSAIMKFM 281
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S++P+R I G+G+V E L D GI C ++ L+ +F F + LGLG T
Sbjct: 282 SAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLFGEKCYRFLMQCYLGLGRT 340
Query: 181 NTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKS+ +ERTF T + A L KL A L DM + +GRTL LK+K
Sbjct: 341 KIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKDMLRTQFKGRTLVLKVKLH 400
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 285
+FEV +R + L K + SED+ ++A V L E P + +RL+GLR T
Sbjct: 401 TFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIRLMGLRCTNL 451
>gi|400601997|gb|EJP69622.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 638
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 174/291 (59%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI + +FTKYT R+V YD F +AS+DEAYL+ITE C
Sbjct: 181 MAGFVAKKLCPQLILIKPNFTKYTAKGREVREVLADYDARFESASIDEAYLNITEYCVAH 240
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+ E+ E+LR V+E+ +T SAG+A N LAK+CS+ NKPNGQ+VL ++R ++ F+
Sbjct: 241 GMGPAEVVEQLRKEVHEKTNITVSAGIAANSRLAKICSNFNKPNGQYVLSHERNEIVAFM 300
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RKI GIG+V E L ++ GI C ++ + L +F T +F + LGLG T
Sbjct: 301 RDLPTRKIPGIGRVLERELLEI-GIKNCGDIYEHRQYLHRLFGDKTFEFLIGCYLGLGRT 359
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF L KL AE L D+++ +GRTL LK+K
Sbjct: 360 KIQPAEEYERKSVGTESTFREMSHPTALREKLRATAEDLEGDLKRAECKGRTLCLKIKLH 419
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V + + ++D+ +A + L+ E+P + LRL+GLR T
Sbjct: 420 TFEVYTRQVVPPRAVHLADDLYNYALPMLAKLEQEMPGMKLRLMGLRCTHL 470
>gi|408391946|gb|EKJ71312.1| hypothetical protein FPSE_08551 [Fusarium pseudograminearum CS3096]
Length = 639
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 176/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP LI + +F KYT + R+V YDP F +AS+DEAYL+ITE C+E
Sbjct: 182 MAGFVAKKLCPNLILLKPNFQKYTAKAHEVREVLVNYDPRFESASIDEAYLNITEYCQEH 241
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E+ E++R V+++ +T SAG+A N LAK+CS++NKPNGQ+VL +DR ++ F+
Sbjct: 242 QMGPAEVVEQMRREVHQKTNITVSAGIAANARLAKICSNMNKPNGQYVLSSDRPTILAFM 301
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L R + GIG+V E L ++ I TC ++ + L +F T++F + LGLG T
Sbjct: 302 RDLSTRSVNGIGRVLERELLEI-DIKTCGDLYEHRQYLNPLFGEKTSEFLFTCYLGLGRT 360
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF D L KL AE L DM++ +GRTL LK+K
Sbjct: 361 KIQPAEEYERKSVGTESTFRDMSDPTQLREKLRSTAEDLEQDMKRAECKGRTLCLKVKLH 420
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAE--LP-VSLRLIGLRVTQF 285
+FEV TR L + I ++D+ +A +L K E +P + LRL+GLR T
Sbjct: 421 TFEVFTRQAVLPRAIWLADDLYNYALPILTKLEQDMPGMRLRLMGLRCTHL 471
>gi|212526212|ref|XP_002143263.1| DNA-directed polymerase kappa, putative [Talaromyces marneffei ATCC
18224]
gi|210072661|gb|EEA26748.1| DNA-directed polymerase kappa, putative [Talaromyces marneffei ATCC
18224]
Length = 647
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 178/291 (61%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI +P ++ KYT ++ R +F +YDP F +AS+DEAYL+IT C E
Sbjct: 165 MAGFVAKKLCPDLICIPQNYEKYTAKAEEIRAIFVEYDPCFESASIDEAYLNITAYCDEN 224
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E +++R+ + +E +T SAG+A N LAK+ S+ NKPNGQF +P++R A+M F+
Sbjct: 225 DMDPQEAVQQMRSRIADETKITVSAGIAANTKLAKIASNQNKPNGQFYIPSEREAIMAFV 284
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ GIG+V E LR + GI TC ++ + L +F F + LGLG T
Sbjct: 285 KDLPVRKVNGIGRVFERELRAI-GIETCGQIYPHRASLKRLFGEKAFHFLMQCHLGLGRT 343
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TFS D + KL A+ L+ D+ + +GRTL LK+K
Sbjct: 344 KIQPAVDYERKSVGTESTFSEISDPDAIRAKLRWAADELARDLSRTQFKGRTLVLKIKLH 403
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV TR V K + ++D+ ++ + L+ E+P + LRL+GLR T
Sbjct: 404 TFEVYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHL 454
>gi|452848121|gb|EME50053.1| hypothetical protein DOTSEDRAFT_164998 [Dothistroma septosporum
NZE10]
Length = 640
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 175/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A KLCP+LI +P +F KYT + R V +YDP F +AS+DEAYL++T+ C E
Sbjct: 180 MAGFVADKLCPQLIHLPLNFEKYTSKAKEVRAVLEQYDPRFESASIDEAYLNLTQYCEEH 239
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ + ++R V++E +T SAG+A N LAK+CS+ NKPNGQF LP DR +++ F+
Sbjct: 240 HMEPEDAVSQMRAQVFQETRITISAGIAANAKLAKICSNKNKPNGQFKLPADRASILHFM 299
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+L RK+ GIG+V E L D GI TC ++ + + +F T +F + V LGLG T
Sbjct: 300 RNLSTRKVNGIGRVLEREL-DAIGIKTCGDIFPQRHYINRLFGEKTFEFLMGVHLGLGRT 358
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ P F RKS+ +E +F D L KL AE L D+Q+ +GRTL LK+K
Sbjct: 359 DVRPIEEFGRKSVGTESSFKDISDPNELRDKLRWTAEELEKDLQRTEFKGRTLCLKVKLH 418
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 285
++EV TR V K + +++D+ + +L+ E P + LRL+GLR T
Sbjct: 419 TYEVFTRQVQPPKAVYTADDLYNFSLPMLQKLEQEFPNMKLRLMGLRCTHL 469
>gi|398412111|ref|XP_003857385.1| hypothetical protein MYCGRDRAFT_107195 [Zymoseptoria tritici
IPO323]
gi|339477270|gb|EGP92361.1| hypothetical protein MYCGRDRAFT_107195 [Zymoseptoria tritici
IPO323]
Length = 653
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 174/291 (59%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A +LCPELI +P +F KYT + R V +YDP F ++S+DEAYL+IT+ C++
Sbjct: 176 MAGFVADQLCPELIHIPLNFEKYTAKAKEVRSVLEQYDPRFESSSIDEAYLNITQYCKKH 235
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S + ++R V+EE +T SAG+A N LAK+CS+ NKPNGQ+ LP+DR +M F+
Sbjct: 236 DMSPEDAVSQMRAQVFEETKITVSAGIAANAKLAKICSNKNKPNGQYRLPSDRTTIMGFM 295
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ G+G+V E L D GI TC ++ + + +F +F + V LGLG T
Sbjct: 296 RDLPTRKVNGVGRVLEREL-DAIGIKTCGDIGPQRHYINRLFGEKAFEFLMGVHLGLGRT 354
Query: 181 NTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A RKS+ +E TF D L KL I++ L D+Q+ +GRTL LK+K
Sbjct: 355 EVRPAGETERKSVGTESTFHDMSDPKELRDKLRWISDELEKDLQRTEFKGRTLVLKVKLH 414
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 285
++EV TR K + +++D+ V L++E P + LRL+GLR T
Sbjct: 415 TYEVLTRQFQPPKAVYTADDLYHFGLPMLVKLESEHPGMKLRLMGLRCTHL 465
>gi|336260609|ref|XP_003345098.1| hypothetical protein SMAC_07389 [Sordaria macrospora k-hell]
gi|380096554|emb|CCC06602.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 636
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 177/287 (61%), Gaps = 7/287 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI +P +F KYT + R++ +YDPNF +AS+DEAYL+IT+ C
Sbjct: 179 MAGFVAKKLCPDLILLPINFDKYTAKAGEVREIIAEYDPNFESASIDEAYLNITDYCTRH 238
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ + ++R+ ++E+ G+ SAG+A N LAK+CS++NKPNGQ+VLP++R A+M F+
Sbjct: 239 TMTAADAVSKMRSEIHEKTGIPVSAGIAANTRLAKICSNMNKPNGQYVLPSERAAIMEFM 298
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L V GI+T ++ L +F +F + LGLG T
Sbjct: 299 RDLPSRKVNGIGRVFERELAAV-GIHTLGDIHPNRQYLRQLFGEKAFEFLIHCYLGLGRT 357
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A RKS+ +E TF D L KL AE L D+++ +GRTL LK+K
Sbjct: 358 CVKPAETYERKSVGTEGTFRDMSDPTELRSKLCRTAEDLEQDLRRAECKGRTLCLKVKLH 417
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLR 281
+FEV TR V L + + + D+ +A + L+ E+P + LRL+GLR
Sbjct: 418 TFEVLTRQVVLPRAVYLAADLYNYALPMLTKLEQEIPGMKLRLMGLR 464
>gi|268576074|ref|XP_002643017.1| C. briggsae CBR-POLK-1 protein [Caenorhabditis briggsae]
Length = 612
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 191/346 (55%), Gaps = 58/346 (16%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA----------- 49
MPGFI++KLCP L VP ++TKY+ S ++F +YD + SLDEA
Sbjct: 134 MPGFISKKLCPNLTLVPGNYTKYSKISRQFSEIFAEYDGDVGMMSLDEAYIDLTDYVAAR 193
Query: 50 -----------------------------YLDITEV----CR----------ERGISGIE 66
YLD E C E GI E
Sbjct: 194 TEKRTLKRHRYGGDCPCWLPRVPDSESPEYLDSEESECPKCSKTRKIYYDDVEFGIGREE 253
Query: 67 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 126
I E+R V ++ GLTCSAG+A N +LAK+CSD NKPNGQ+VL NDR ++ F+ LPIR
Sbjct: 254 IVREIRFRVEQKTGLTCSAGIAANFMLAKICSDFNKPNGQYVLENDREKILEFLRDLPIR 313
Query: 127 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 186
K+GGIG+V+E L+ + I T +MLQK SL FS T + FL LGL +
Sbjct: 314 KVGGIGRVSEAHLQSM-DIRTVGDMLQKASLFPLCFSQLTQESFLRTALGLPGRPSSSDP 372
Query: 187 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLKLKTASFEVRTR 245
RKSIS ERTFS T D +L + +EI ML D++K G+ G+T+TLKLK +SF+V TR
Sbjct: 373 RRKSISVERTFSPTADFKILLLEHSEICRMLEEDIRKSGVTGGKTITLKLKLSSFDVLTR 432
Query: 246 AVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDK 289
++T + +++ EDI K + LL+ E +RL+G+R++Q F E+K
Sbjct: 433 SLTPSEAVTTLEDIQKFSLELLEKERGKEIRLLGVRLSQLVFEEEK 478
>gi|121709435|ref|XP_001272419.1| DNA-directed polymerase kappa, putative [Aspergillus clavatus NRRL
1]
gi|119400568|gb|EAW10993.1| DNA-directed polymerase kappa, putative [Aspergillus clavatus NRRL
1]
Length = 600
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 183/323 (56%), Gaps = 16/323 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A KLCP LI +P ++ KYT + R +F +YDP F +AS+DEAYL+IT C E
Sbjct: 163 MATFVAMKLCPHLICLPQNYEKYTAKAQEIRAIFAQYDPLFESASIDEAYLNITSYCNEN 222
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E +R V E+ + SAG+A N +AK+ S+ NKPNGQF +PNDR AVM F+
Sbjct: 223 NLDPEEAVSRMRAEVLEKTKIFVSAGIAANAKIAKISSNRNKPNGQFRVPNDRDAVMEFM 282
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ G+G+V E L D GI +C ++ + + L +F F + LGLG T
Sbjct: 283 KELPVRKVNGVGRVFEREL-DAIGIKSCGDIWPQRAYLTRLFGEKAFQFLIQCYLGLGRT 341
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P ++ RKS+ +ERTF+ DK LL KL + A+ L D+ + +GRTL LK+K A
Sbjct: 342 QIQPVEKYERKSVGTERTFNELGDKQLLRGKLWDTAQELEKDLARNECKGRTLVLKVKLA 401
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPS 294
SFEV +R + +S ++D+ A + L+ E+P + LRL+GLR T
Sbjct: 402 SFEVLSRQCQPPRALSLAKDLHSFALPMLAKLEREIPNMKLRLLGLRCTNLVS------- 454
Query: 295 DPTQKTLTNFMTSGHASKKIVGD 317
T+K NF K + GD
Sbjct: 455 --TKKVEVNFFGPPLRPKSLSGD 475
>gi|339243265|ref|XP_003377558.1| DNA polymerase kappa [Trichinella spiralis]
gi|316973633|gb|EFV57197.1| DNA polymerase kappa [Trichinella spiralis]
Length = 844
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 193/358 (53%), Gaps = 69/358 (19%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT------ 54
MPGFI +KLCP+L VP +F KY+ S + + YDPN +ASLDEAY+D+T
Sbjct: 379 MPGFIGKKLCPQLTIVPCNFEKYSAISREVKNILKLYDPNLCSASLDEAYMDVTEYLVLR 438
Query: 55 ----------------------------------------EVCRERGISGI--------- 65
E+C E G I
Sbjct: 439 QSQNTPVFHRSVHYTGECDCRWPYKYLPCCVLRESTKISSEICNECGKLCIHVEDEVAFG 498
Query: 66 ----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 121
E+A E+R V + GLTCS G+APN +LAK+ SDINKPNGQF + DR ++ F+
Sbjct: 499 NNAEEVAREIRFLVEQATGLTCSIGIAPNSMLAKLGSDINKPNGQFHMRADRNFIVDFLR 558
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG--- 178
+LPIRK+ GIG VTE +L + G++TC E+ Q+ +L FS +A FL + LG+
Sbjct: 559 NLPIRKVCGIGAVTEALLNGL-GVSTCGELYQRRGILALAFSERSAISFLRISLGIDDEF 617
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKSIS+ERTFS + + L ++ LS D+ + L+G+T+TLK+KT
Sbjct: 618 CDKDDEVASRKSISTERTFSEISEPSRLLAVCRKLCNSLSEDVIERNLKGKTVTLKVKTI 677
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKV 290
F+VRTRA T+ +Y+ ++++I AS LL+ E+ P+ LRL+G+R++ E KV
Sbjct: 678 DFDVRTRANTVDRYVQAADEIYNIASSLLQEEIRARLPNPLRLRLMGVRLSTLQESKV 735
>gi|453088846|gb|EMF16886.1| DNA-directed polymerase kappa [Mycosphaerella populorum SO2202]
Length = 660
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 175/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A KLCP+LI VP +F KYT + R V +YDP F +AS+DEAYL+IT+ C++
Sbjct: 162 MAGFVADKLCPQLIHVPLNFEKYTAKARQVRAVLEQYDPRFESASIDEAYLNITKYCQDH 221
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ + ++R V++E +T SAG+A N LAK+CS+ NKPNGQF LP++R +++F+
Sbjct: 222 NMDPEDAVSQMREQVFQETKITISAGIAANAKLAKICSNKNKPNGQFKLPSERTTILSFM 281
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L D G+ TC ++ + +F +F + V LGLG T
Sbjct: 282 RDLPTRKVNGIGRVLEREL-DAIGVKTCGDIYSHRQYINRLFGEKAFEFLMGVYLGLGRT 340
Query: 181 NTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ A R+S+ +E TF D L KL AE L D+++ +GRTL LK+K
Sbjct: 341 DVKPAEEHARRSVGTESTFHDMSDPQELRDKLRRTAESLEEDLKRTEFKGRTLCLKVKLH 400
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 285
++EV TR V K + +++++ ++ +L+ E P + LRL+GLR T
Sbjct: 401 TYEVFTRQVQPPKAVFTADELYNYSLPMLQKLEKEYPGMKLRLMGLRCTHL 451
>gi|392570399|gb|EIW63572.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 638
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 182/316 (57%), Gaps = 15/316 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCPELI + + + Y S+ +F +YDP AA DE YL+IT C E
Sbjct: 155 MATFVAKKLCPELIVLKSHYEWYNEMSNKVMSIFRRYDPTMCAAGCDEGYLNITNYCEEH 214
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S E ++R+ V EE LT SAG+APN+ NKPNGQF L D AV F+
Sbjct: 215 SLSPEECVSQMRSVVQEETMLTVSAGIAPNK---------NKPNGQFKLDFDPDAVKKFM 265
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS- 179
L IRK+ G+G+V E +L D G+ TC ++ + ++L + H +F L LG+ S
Sbjct: 266 YDLSIRKVPGVGRVHERLL-DSIGVKTCGDVYEHRAVLFLLDKHFGLEFLLQAYLGIASN 324
Query: 180 -TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
Q RKSI +ERTF+ D A +Y KL E+A L ADM++ G G+T+TLK K
Sbjct: 325 VVQPGQREERKSIGAERTFNALSDTAKIYAKLEEVAAELEADMEESGWTGKTITLKYKLD 384
Query: 239 SFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPT 297
+F+V TRA + ++IS+ ED+ LLK ELP++LRLIGLRVT+ + ++A +
Sbjct: 385 TFQVFTRAKSFDRWISTKKEDLFAIGQELLKPELPLTLRLIGLRVTKLKD--LKAEVESK 442
Query: 298 QKTLTNFMTSGHASKK 313
+ + F + +S K
Sbjct: 443 ARGIKRFFEAAPSSPK 458
>gi|296194317|ref|XP_002744900.1| PREDICTED: DNA polymerase kappa [Callithrix jacchus]
Length = 861
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 171/263 (65%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 281 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 339
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 340 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 398
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 399 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 458
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 459 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPSEEDRKH 518
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + + G
Sbjct: 519 Q---QRSIIGFLQAGNQTPSVNG 538
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|348688715|gb|EGZ28529.1| hypothetical protein PHYSODRAFT_552269 [Phytophthora sojae]
Length = 608
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 171/315 (54%), Gaps = 34/315 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI ++LCPEL FVP + KY + R VF +YDPNF A SLDEA LD+T+ +
Sbjct: 135 MPGFIGKELCPELHFVPVNMEKYAGVAAQVRAVFAQYDPNFEAFSLDEACLDLTDYVAKN 194
Query: 61 GISGIEIA--------------------------------EELRTSVYEEAGLTCSAGVA 88
+A ELR +++ LT SAG+A
Sbjct: 195 WQKYASVALDDFESKEEVQEEEEQWPSTPAGRAAIAAAVVRELRQKIFDCTQLTASAGIA 254
Query: 89 PNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTC 148
N +LAK+CSD+NKPNGQ+VLP R V+TF+ LP+RKIGGIGKVTE IL + G++T
Sbjct: 255 VNAMLAKICSDMNKPNGQYVLPFTRERVLTFLCDLPVRKIGGIGKVTEKILNEALGVHTG 314
Query: 149 EEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR 208
E+ + + +F+ TA + L LG+ Q RKS S ERTF D L
Sbjct: 315 GELFNQRGKIFHLFTEKTAVWLLQTSLGVRERREKQE--RKSFSRERTFRSLSDPKELEA 372
Query: 209 KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK 268
K E+ +ML+ D++K + +T K F +R+VTL I ++ED+ A LL+
Sbjct: 373 KCLEVCKMLAKDLEKANKAAKNVTFVYKDTDFARCSRSVTLASAIFTAEDLYSSAVELLR 432
Query: 269 AELPVSLRLIGLRVT 283
ELP++LRL+G+R
Sbjct: 433 RELPLTLRLLGVRAA 447
>gi|403256450|ref|XP_003920890.1| PREDICTED: DNA polymerase kappa isoform 1 [Saimiri boliviensis
boliviensis]
gi|403256452|ref|XP_003920891.1| PREDICTED: DNA polymerase kappa isoform 2 [Saimiri boliviensis
boliviensis]
Length = 863
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 168/262 (64%), Gaps = 10/262 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + DR AVM FI
Sbjct: 281 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPDRQAVMDFI 340
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 341 KDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGST 399
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 400 HLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVNF 459
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ IS++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 460 EVKTRASTVSSVISTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPSEEDRKHQ 519
Query: 295 DPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 520 ---QRSIIAFLQAGNQTPSASG 538
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 152 MPGFIAKRLCPHLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLQER 211
>gi|431907837|gb|ELK11444.1| DNA polymerase kappa [Pteropus alecto]
Length = 868
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 171/265 (64%), Gaps = 16/265 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDAERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F EDK
Sbjct: 465 FEVKTRAYTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRLSSFPNEEDKKH 524
Query: 292 APSDPTQKTLTNFMTSGHASKKIVG 316
Q+++ +F+ +G+ + G
Sbjct: 525 Q-----QRSIIDFLQAGNQTLSATG 544
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI +P +F KY S +++ YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 152 MPGFIAKRLCPQLIIIPPNFDKYRAVSREVKEILADYDPNFMAMSLDEAYLNITKHLQER 211
>gi|259485643|tpe|CBF82838.1| TPA: DNA-directed polymerase kappa, putative (AFU_orthologue;
AFUA_7G01270) [Aspergillus nidulans FGSC A4]
Length = 612
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 171/289 (59%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R + +YDP F +AS+DEAYL+IT CRE+
Sbjct: 163 MASFVAKKLCPQLICLPQNYEKYTAKAQEIRAILAQYDPQFESASIDEAYLNITAYCREK 222
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E +R + E+ ++ SAG+A N +AK+CS+ NKPNGQF +PN++ A+M F+
Sbjct: 223 QLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPNEKNAIMEFM 282
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RKI G+G+V E L D GI TC ++ + + L +F F LG+G T
Sbjct: 283 RDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLFGEKALHFLAQCYLGVGRT 341
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A RKS+ +ERTF + KL A+ L D+ + GRTL LK+K A
Sbjct: 342 KIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKDLSRTQFMGRTLVLKVKLA 401
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVT 283
+FEV TR + +S+++D+ A + L+ E+P + LRL+G+R T
Sbjct: 402 TFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLRLLGIRCT 450
>gi|67525831|ref|XP_660977.1| hypothetical protein AN3373.2 [Aspergillus nidulans FGSC A4]
gi|40744161|gb|EAA63341.1| hypothetical protein AN3373.2 [Aspergillus nidulans FGSC A4]
Length = 609
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 171/289 (59%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R + +YDP F +AS+DEAYL+IT CRE+
Sbjct: 160 MASFVAKKLCPQLICLPQNYEKYTAKAQEIRAILAQYDPQFESASIDEAYLNITAYCREK 219
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E +R + E+ ++ SAG+A N +AK+CS+ NKPNGQF +PN++ A+M F+
Sbjct: 220 QLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPNEKNAIMEFM 279
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RKI G+G+V E L D GI TC ++ + + L +F F LG+G T
Sbjct: 280 RDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLFGEKALHFLAQCYLGVGRT 338
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A RKS+ +ERTF + KL A+ L D+ + GRTL LK+K A
Sbjct: 339 KIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKDLSRTQFMGRTLVLKVKLA 398
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVT 283
+FEV TR + +S+++D+ A + L+ E+P + LRL+G+R T
Sbjct: 399 TFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLRLLGIRCT 447
>gi|388582806|gb|EIM23110.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 499
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 173/287 (60%), Gaps = 3/287 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA KLC I VP +Y S ++F ++D N AASLDEAYL++T E
Sbjct: 48 MPCFIAHKLCDHFIEVPMRMDRYVEKSRQVMEIFSRFDENMAAASLDEAYLNVTSYMNEH 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G++ E++++LR V E GLT S G+APN+ LAK+CSD NKPNG+F + + V++F+
Sbjct: 108 GLTPEEVSQQLRKMVECETGLTVSTGIAPNKTLAKICSDKNKPNGEFTMQFYKDTVVSFM 167
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIG++ E +++ + GI TC ++L L + +D L LG+ S
Sbjct: 168 KDLPIRKVPGIGRINERLVQSL-GIETCGDILNHKVELYLLRKELQSDGLLRANLGIFSN 226
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A+ RKS+ E+TF D +L KL + + L D+++ GRT+TLK K
Sbjct: 227 TVAPAKKEDRKSVGIEKTFQPIFDTKVLMEKLKILCKELEGDLKRTQFEGRTVTLKYKKD 286
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF 285
+FE TR+ ++ K++S SE+I A LL+ ELP++LRL+G+R+T
Sbjct: 287 TFENFTRSTSVHKFLSQSEEIWPVAKGLLERELPLTLRLMGVRLTNL 333
>gi|327298651|ref|XP_003234019.1| DNA-directed polymerase kappa [Trichophyton rubrum CBS 118892]
gi|326464197|gb|EGD89650.1| DNA-directed polymerase kappa [Trichophyton rubrum CBS 118892]
Length = 604
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 168/287 (58%), Gaps = 7/287 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+IT+ C
Sbjct: 168 MASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNITQYCAAN 227
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +PN+R A+M F+
Sbjct: 228 NVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPNERAAIMEFM 287
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L G+ TC ++ Q +L +F F + LGLG T
Sbjct: 288 TKIPVRKVNGVGRVFEREL-GAIGVTTCGDIYQYRGMLSQLFGQKAFCFLMQCYLGLGRT 346
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P F RKS+ +E TF+ D L KL A L D++ G +GRTL LK+K
Sbjct: 347 RIQPAGTFPRKSVGTEHTFADLSDFHQLQEKLRWTASALEKDLRAAGTKGRTLVLKVKLH 406
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 281
+FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 407 TFEVLSRQTVAPKPLLLADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|417405027|gb|JAA49239.1| Putative dna polymerase kappa [Desmodus rotundus]
Length = 866
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 168/257 (65%), Gaps = 16/257 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 344
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LP+RK+ GIGKVTE +L+ GI TC E+ ++ +LL +FS ++ +FL + +GLGS
Sbjct: 345 IKDLPLRKVSGIGKVTEKMLK-ALGIITCTELYEQRALLSLLFSETSWRYFLQISMGLGS 403
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ P+ RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 404 THLPRDGERKSMSVERTFSEMSKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 463
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 464 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPRPLRLRLMGVRLSSFLNEEDKKH 523
Query: 292 APSDPTQKTLTNFMTSG 308
Q+++ F+ SG
Sbjct: 524 Q-----QRSIVGFLQSG 535
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+L VP +F Y S +++ YDPNFMA SLDEAYL+IT +ER
Sbjct: 152 MPGFIAKKLCPQLTIVPPNFDIYRAVSREVKEILADYDPNFMATSLDEAYLNITTHLQER 211
>gi|395510536|ref|XP_003759530.1| PREDICTED: DNA polymerase kappa [Sarcophilus harrisii]
Length = 865
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 177/283 (62%), Gaps = 13/283 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + +R AVM FI
Sbjct: 291 GTSADEVVKEIRFRIEQKTSLTASAGIAPNTMLAKVCSDKNKPNGQYQISPNRQAVMDFI 350
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI TC ++ QK +LL +FS ++ FL + LGLGST
Sbjct: 351 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSDLYQKRALLSLLFSETSWHSFLHISLGLGST 409
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ RKS+S ERTFS LY E+ L+ D+Q+EGL+G+T+T+KLK +F
Sbjct: 410 QMERDGERKSMSIERTFSEINKAEELYSLCQELCNDLAQDLQREGLKGKTVTIKLKNVNF 469
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F+ ++ R
Sbjct: 470 EVKTRASTVAAVVSTAEEIFAIAKELLKVEIDADYPQPLRLRLMGVRISGFSSEEDRKHR 529
Query: 295 DPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETS 337
QK++ +F+ G + VG S+ N D ++ ETS
Sbjct: 530 ---QKSIISFLKVGSHTIDPVG---SVLEKNNQDQVMKPPETS 566
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 43/60 (71%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+L VP +F KY S R++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 151 MPGFIAKRLCPQLTIVPPNFDKYREVSKEVREILADYDPNFMAMSLDEAYLNITKHLEER 210
>gi|402871879|ref|XP_003899875.1| PREDICTED: DNA polymerase kappa isoform 1 [Papio anubis]
Length = 870
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|109077621|ref|XP_001105220.1| PREDICTED: DNA polymerase kappa isoform 5 [Macaca mulatta]
gi|297294555|ref|XP_002804464.1| PREDICTED: DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|355691402|gb|EHH26587.1| DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|281339406|gb|EFB14990.1| hypothetical protein PANDA_005468 [Ailuropoda melanoleuca]
Length = 828
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 171/265 (64%), Gaps = 17/265 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I +LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKNLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEVSKPEEQYSLCQELCSELAQDLQKEGLKGRTITIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDAEFPHPLRLRLMGIRLSSFPNEEDKKQ 524
Query: 292 APSDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 525 ------QRSIIGFLQAGNQTLSAAG 543
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFMAMSLDEAYLNITQHLQER 211
>gi|380813532|gb|AFE78640.1| DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|355750000|gb|EHH54338.1| DNA polymerase kappa [Macaca fascicularis]
Length = 870
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIEADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|301763685|ref|XP_002917258.1| PREDICTED: DNA polymerase kappa-like [Ailuropoda melanoleuca]
Length = 869
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 171/265 (64%), Gaps = 17/265 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I +LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKNLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEVSKPEEQYSLCQELCSELAQDLQKEGLKGRTITIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDAEFPHPLRLRLMGIRLSSFPNEEDKKQ 524
Query: 292 APSDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 525 ------QRSIIGFLQAGNQTLSAAG 543
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFMAMSLDEAYLNITQHLQER 211
>gi|402871881|ref|XP_003899876.1| PREDICTED: DNA polymerase kappa isoform 2 [Papio anubis]
Length = 780
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 315 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 374
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 435 Q---QRSIIGFLQAGNQALSATG 454
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 62 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 121
>gi|334325286|ref|XP_001368809.2| PREDICTED: DNA polymerase kappa [Monodelphis domestica]
Length = 856
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 169/264 (64%), Gaps = 14/264 (5%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P R AVM FI
Sbjct: 280 GTSAEEVVKEIRFRIKQKTSLTASAGIAPNTVLAKVCSDKNKPNGQYQIPPTRQAVMDFI 339
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI TC ++ QK +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIITCSDLYQKRALLSLLFSETSWHSFLHISLGLGST 398
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ RKS S ERTF+ LY E+ L+ D+Q+EGL+G+T+T+KLK +F
Sbjct: 399 QMERDGERKSRSIERTFTEISKAEELYSLCQELCSDLAQDLQREGLKGKTVTIKLKNVNF 458
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ +S++E+I A LLKAE+ P+ LRL+G+R++ F ++
Sbjct: 459 EVKTRASTVAAVVSTAEEIFAIAKELLKAEIDADYPQPLRLRLMGVRISGFANEE----- 513
Query: 295 DPT--QKTLTNFMTSGHASKKIVG 316
DP Q+++ +F+ +G S +G
Sbjct: 514 DPKNRQRSIISFLKAGGHSLDTIG 537
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+L V +F KY S R++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 143 MPGFIAKRLCPQLTIVAPNFDKYRKISKEVREILADYDPNFMAMSLDEAYLNITKHLEER 202
>gi|114599641|ref|XP_001149179.1| PREDICTED: DNA polymerase kappa isoform 6 [Pan troglodytes]
gi|410294520|gb|JAA25860.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 292 APSDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|410256758|gb|JAA16346.1| polymerase (DNA directed) kappa [Pan troglodytes]
gi|410256760|gb|JAA16347.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 292 APSDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|410210590|gb|JAA02514.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 292 APSDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|410339117|gb|JAA38505.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 292 APSDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|332233863|ref|XP_003266124.1| PREDICTED: DNA polymerase kappa isoform 1 [Nomascus leucogenys]
Length = 870
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTALTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLHAGNQALSATG 544
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYQAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|397478334|ref|XP_003810503.1| PREDICTED: DNA polymerase kappa isoform 1 [Pan paniscus]
gi|397478336|ref|XP_003810504.1| PREDICTED: DNA polymerase kappa isoform 2 [Pan paniscus]
Length = 871
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 292 APSDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|397478338|ref|XP_003810505.1| PREDICTED: DNA polymerase kappa isoform 3 [Pan paniscus]
Length = 781
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 434
Query: 292 APSDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 435 Q-----QRSIIGFLQAGNQA 449
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 62 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 121
>gi|441658787|ref|XP_004091292.1| PREDICTED: DNA polymerase kappa isoform 2 [Nomascus leucogenys]
Length = 780
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAEEVVKEIRFRIEQKTALTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 435 Q---QRSIIGFLHAGNQALSATG 454
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 62 MPGFIAKRLCPQLIIVPPNFDKYQAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 121
>gi|410039233|ref|XP_003950572.1| PREDICTED: DNA polymerase kappa [Pan troglodytes]
Length = 781
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 434
Query: 292 APSDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 435 Q-----QRSIIGFLQAGNQA 449
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 62 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 121
>gi|7705344|ref|NP_057302.1| DNA polymerase kappa [Homo sapiens]
gi|59798438|sp|Q9UBT6.1|POLK_HUMAN RecName: Full=DNA polymerase kappa; AltName: Full=DINB protein;
Short=DINP
gi|6049286|gb|AAF02540.1|AF163570_1 DINB protein [Homo sapiens]
gi|6463740|dbj|BAA86943.1| DINB1 [Homo sapiens]
gi|30039655|gb|AAP12648.1| polymerase (DNA directed) kappa [Homo sapiens]
gi|119616169|gb|EAW95763.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|119616170|gb|EAW95764.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|119616171|gb|EAW95765.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|189054406|dbj|BAG37179.1| unnamed protein product [Homo sapiens]
Length = 870
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|6681760|gb|AAF23270.1| DINP protein [Homo sapiens]
Length = 870
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|426384398|ref|XP_004058756.1| PREDICTED: DNA polymerase kappa isoform 1 [Gorilla gorilla gorilla]
Length = 871
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIAR+LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIARRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|62088162|dbj|BAD92528.1| polymerase (DNA directed) kappa variant [Homo sapiens]
Length = 790
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 207 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 265
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 266 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 324
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 325 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 384
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 385 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 444
Query: 294 SDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 445 Q---QRSIIGFLQAGNQA 459
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 72 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 131
>gi|311249680|ref|XP_003123756.1| PREDICTED: DNA polymerase kappa [Sus scrofa]
Length = 878
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 169/264 (64%), Gaps = 14/264 (5%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R VM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQVVMDF 352
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTDLYQQRALLSLLFSETSWHYFLHISLGLGS 411
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T P+ RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+TLKLK
Sbjct: 412 TCLPRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTLKLKNVD 471
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 292
FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVLSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEEKKH 531
Query: 293 PSDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ G+ + G
Sbjct: 532 ----QQRSIIGFLQPGNQTLSATG 551
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++F YDPNFMA SLDEAYL+IT+ ER
Sbjct: 159 MPGFIAKRLCPQLIIVPPNFDKYRAVSSEVKEIFADYDPNFMALSLDEAYLNITKHLEER 218
>gi|149726533|ref|XP_001504725.1| PREDICTED: DNA polymerase kappa [Equus caballus]
Length = 860
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 168/263 (63%), Gaps = 12/263 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + DR AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPDRQAVMDFI 345
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL V +GLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHQFLHVSMGLGST 404
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 HLARDGERKSRSVERTFSEMSKAEEQYSLCQELCGELAQDLQKEGLKGRTVTIKLKNVNF 464
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 293
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+RV+ F NE++ +
Sbjct: 465 EVKTRASTVSSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRVSGFPNEEEKKH- 523
Query: 294 SDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 524 ---QQRSIIGFLQAGNQTPSATG 543
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+L+ VP +F KY S +++ YDPNF+A SLDEAYL+IT+ +ER
Sbjct: 152 MPGFIAKRLCPQLLIVPPNFDKYRAVSREVKEILADYDPNFLAMSLDEAYLNITKHLQER 211
>gi|6753636|ref|NP_036178.1| DNA polymerase kappa [Mus musculus]
gi|59798433|sp|Q9QUG2.1|POLK_MOUSE RecName: Full=DNA polymerase kappa; AltName: Full=DINB protein;
Short=DINP
gi|6049288|gb|AAF02541.1|AF163571_1 DINB protein [Mus musculus]
gi|6463734|dbj|BAA86942.1| DINB1 [Mus musculus]
gi|14279087|dbj|BAB59059.1| DNA polymerase kappa [Mus musculus]
Length = 852
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 295 DPTQKTLTNFMTSGHASKKIVGD 317
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
>gi|56160426|gb|AAV80827.1| polymerase kappa isoform 1 [Homo sapiens]
Length = 780
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 294 SDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 435 Q---QRSIIGFLQAGNQA 449
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 62 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 121
>gi|148668569|gb|EDL00888.1| polymerase (DNA directed), kappa, isoform CRA_a [Mus musculus]
gi|148668570|gb|EDL00889.1| polymerase (DNA directed), kappa, isoform CRA_a [Mus musculus]
Length = 852
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 295 DPTQKTLTNFMTSGHASKKIVGD 317
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
>gi|426384400|ref|XP_004058757.1| PREDICTED: DNA polymerase kappa isoform 2 [Gorilla gorilla gorilla]
Length = 781
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 294 SDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 435 Q---QRSIIGFLQAGNQA 449
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIAR+LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 62 MPGFIARRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 121
>gi|326472504|gb|EGD96513.1| DNA-directed polymerase kappa [Trichophyton tonsurans CBS 112818]
gi|326484790|gb|EGE08800.1| DNA-directed polymerase kappa [Trichophyton equinum CBS 127.97]
Length = 604
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 167/287 (58%), Gaps = 7/287 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+IT+ C
Sbjct: 168 MASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNITQYCAAN 227
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +PN+R A+M F+
Sbjct: 228 NVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPNERAAIMEFM 287
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L GI TC ++ Q +L +F F + LGLG T
Sbjct: 288 TKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLFGQKAFCFLMQCYLGLGRT 346
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P F RKS+ +E TF+ D L KL A L D++ +GRTL LK+K
Sbjct: 347 RIQPAGTFPRKSVGTEHTFADLSDFDQLQEKLRWTASALEKDLRAAETKGRTLVLKVKLH 406
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 281
+FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 407 TFEVLSRQTVAPKPLLLADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|291413624|ref|XP_002723070.1| PREDICTED: DNA-directed DNA polymerase kappa, partial [Oryctolagus
cuniculus]
Length = 774
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 168/258 (65%), Gaps = 16/258 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ V+PN R AVM F
Sbjct: 198 GTSAEEVVKEIRFRIKQKTTLTASAGIAPNTMLAKICSDKNKPNGQYQVIPN-RQAVMNF 256
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ G+ TC E+ Q+ +LL +FS ++ +FL V LGLGS
Sbjct: 257 IKDLPIRKVSGIGKVTEKMLK-ALGVVTCTELYQQRALLSLLFSETSWHYFLHVSLGLGS 315
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK
Sbjct: 316 THLARDGERKSMSIERTFSELSKAEEQYSLCQELCRDLAQDLQKEGLKGRTVTVKLKNVD 375
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S+SE+I A LL+ E+ P+ LRL+G+RV+ F EDK +
Sbjct: 376 FEVKTRASTVPCLVSTSEEIFAVAKELLRTEIDADFPHPLRLRLMGVRVSGFPNEEDKKQ 435
Query: 292 APSDPTQKTLTNFMTSGH 309
QK++ F+ +G+
Sbjct: 436 -----QQKSIVGFLQTGN 448
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDP+FMA SLDEAYL+IT+ ER
Sbjct: 67 MPGFIAKRLCPQLIIVPPNFDKYRAVSQEVKEILADYDPDFMAMSLDEAYLNITKHLEER 126
>gi|405119670|gb|AFR94442.1| DNA-directed polymerase kappa [Cryptococcus neoformans var. grubii
H99]
Length = 632
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 165/289 (57%), Gaps = 3/289 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP +I F YT S +++ +YD N M ASLDE YL+IT
Sbjct: 170 MAGFIAKKLCPHIILTDLHFDLYTKASKAVKEILVQYDENLMMASLDEGYLNITPYMSTH 229
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ E+ ++R V E+ LT SAG+A NR+LAK+CSD NKPNGQF L DR ++ F+
Sbjct: 230 NMTAAEVVTQIRAQVEEKTSLTISAGIAANRMLAKICSDKNKPNGQFELAFDRATIVRFL 289
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RKI G G+VTE L + GI TC ++ +K L + LG+
Sbjct: 290 RDLPVRKIPGFGRVTERCL-EGLGIQTCGDIYEKRMDLLLMDHWFGFRGLCRAYLGIADN 348
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ ERTF D + L +I E L D+ + G+T+T+K K
Sbjct: 349 TVAPGRREERKSVGVERTFRDKMDDEEIMATLIDIVEELGKDLDRLQYAGKTITIKYKLH 408
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
++E +TRA ++ KYISS+ DIL A LLK ELP+ +RL+G+R++ +
Sbjct: 409 TYENKTRAKSIPKYISSARDILPIAQELLKKELPLRIRLLGVRLSTLKD 457
>gi|348544851|ref|XP_003459894.1| PREDICTED: DNA polymerase kappa-like [Oreochromis niloticus]
Length = 875
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 170/259 (65%), Gaps = 20/259 (7%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP+ R AVM FI
Sbjct: 278 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTREAVMDFI 337
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP+RK+ GIGKV+E +L + GI+TC + Q+ +LL +FS + FL V LGLGST
Sbjct: 338 HNLPVRKVCGIGKVSEKML-NALGISTCSHLGQQMALLSLLFSETAWHHFLEVSLGLGST 396
Query: 181 NTPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
P+ RKS+S+ERTF S E++ L R E+ E L+ DM+KEGL+G+T+TLKLK
Sbjct: 397 YIPRHEERKSMSTERTFKELSKVEEQLSLCR---ELCEDLAEDMKKEGLKGKTVTLKLKN 453
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFN--EDK 289
+FEV+TRA+TL +++ ++I A LLK E+ P+ LRL+G+R++ F +DK
Sbjct: 454 VNFEVKTRAMTLPCAVATVDEIFAVAKDLLKTEIENESPQPLRLRLMGVRISAFASLDDK 513
Query: 290 VRAPSDPTQKTLTNFMTSG 308
P QK++ F+ SG
Sbjct: 514 -----KPLQKSIIGFLQSG 527
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP L+ VP +F KY S+ R++F YDPNF SLDEAYLD T+ +R
Sbjct: 150 MPGFIAKKLCPSLVIVPLNFDKYRAVSNEIREIFADYDPNFQPLSLDEAYLDFTDHLEQR 209
>gi|403341934|gb|EJY70284.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 912
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 177/291 (60%), Gaps = 9/291 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+L+ V +F KY S + + + +YDP+F + DEA LD+T
Sbjct: 381 MPGFIAKKLCPDLVLVECNFKKYKEVSKVFQAILYEYDPHFESMGSDEANLDLTNYLITH 440
Query: 61 GISG----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
++ +++AEE+RT ++E LTCSAG++ N++LAK+C+D+NKPNGQF L D+ +
Sbjct: 441 NLNDEDNKLKVAEEIRTKIFEATQLTCSAGISCNKMLAKICTDMNKPNGQFYLKPDKEVI 500
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
+ F+ L +RKI GIG++TE +L+ + GI TC++++ K + +FS T+ F + LG
Sbjct: 501 LDFMGKLKVRKIPGIGRMTELVLQSL-GIETCQQIIDKAPEIQIIFSEKTSYFLIRAALG 559
Query: 177 LGST---NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
+ +KSIS TF K++EI E L+ M K + G T+TL
Sbjct: 560 IARNFHEEDDDDACQKSISVSTTFRPLYKLDQFKDKISEICEDLAQRMDKRKIGGLTITL 619
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVT 283
+LK+ F +++TL +YI +SED+ + LL+ + P ++RLIG++++
Sbjct: 620 ELKSTEFNNVNKSMTLNRYIWTSEDMRTYCHQLLEMQWPFPAVRLIGVKMS 670
>gi|299751501|ref|XP_002911648.1| DNA polymerase IV [Coprinopsis cinerea okayama7#130]
gi|197244665|dbj|BAG68959.1| DNA polymerase kappa [Coprinopsis cinerea]
gi|298409403|gb|EFI28154.1| DNA polymerase IV [Coprinopsis cinerea okayama7#130]
Length = 707
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 170/282 (60%), Gaps = 11/282 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFI +KLCP+LIFVP F Y+ S +F +YDP A +DEAYL++T C++
Sbjct: 154 MAGFIGKKLCPQLIFVPAHFDLYSKTSAQIMSIFRRYDPTMCPAGVDEAYLNVTAYCKQH 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G + E+ E+R +V++E LT SAG+APN++LAK+CSD NKPNGQF L + ++ F+
Sbjct: 214 GKTVDEVVSEMRKAVFDETQLTVSAGIAPNKMLAKICSDKNKPNGQFKLEFEPDSIKAFM 273
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SL IRK+ G+G+V E +L D GI TC ++ Q+ ++ + DF L V LG+ S
Sbjct: 274 HSLSIRKVPGVGRVNERLL-DSIGIRTCGDIYQQRGVIALMDKRFGLDFLLRVYLGIASN 332
Query: 181 N-TPQAR-FRKSISSERTFSVTEDK--------ALLYRKLAEIAEMLSADMQKEGLRGRT 230
+ P AR RKSI +ERTFS + + KL E+AE L DM++EG G+T
Sbjct: 333 HVAPHAREERKSIGAERTFSTLDSNHADPKKGSVAIVAKLEEVAEELVEDMKREGWVGKT 392
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 272
+TLK K +++ TRA K+I++ E++ LL + P
Sbjct: 393 VTLKYKLDTYQTFTRAKQFSKWITTKEELFNTGKELLLSRFP 434
>gi|395825506|ref|XP_003785969.1| PREDICTED: DNA polymerase kappa [Otolemur garnettii]
Length = 876
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 168/260 (64%), Gaps = 16/260 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD +KPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTKLTASAGIAPNTMLAKICSDKHKPNGQYQILPN-REAVMDF 352
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ G+GKVTE +L+ GI TC E+ Q+ +LL +F ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGVGKVTEKMLK-ALGIITCTELYQQRALLSLLFPETSWHYFLHISLGLGS 411
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 412 TYLARDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 471
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 291
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 472 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRISSFPNEEDKKQ 531
Query: 292 APSDPTQKTLTNFMTSGHAS 311
QK++ F+ +G+ S
Sbjct: 532 Q-----QKSIIGFLQAGNQS 546
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMATSLDEAYLNITKHLQER 211
>gi|315041825|ref|XP_003170289.1| DNA polymerase kappa [Arthroderma gypseum CBS 118893]
gi|311345323|gb|EFR04526.1| DNA polymerase kappa [Arthroderma gypseum CBS 118893]
Length = 604
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 177/318 (55%), Gaps = 16/318 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+IT+ C
Sbjct: 168 MASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNITQYCAAN 227
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +P++R A+M F+
Sbjct: 228 NVDPQDAVQQLRDEVFAQTGVTVSAGIAANAKIAKITSNWNKPNGQFHVPSERAAIMDFM 287
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L GI TC ++ Q +L +F F + LGLG T
Sbjct: 288 TKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQFRGMLSQLFGQKAFCFLMQCYLGLGRT 346
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P F RKS+ +E TF+ D L KL A L D++ +GRTL LK+K
Sbjct: 347 QIQPAGTFPRKSVGTEHTFADLGDFHQLQEKLKWTASALEKDLRAAETKGRTLVLKVKLH 406
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQFNEDKVRAPS 294
+FE+ +R K + ++D+ K++ LL K + +RL+GLR T
Sbjct: 407 TFELLSRQTVAPKPLLLADDLYKYSLPLLTKLYKERPQMKIRLMGLRCTSLVS------- 459
Query: 295 DPTQKTLTNFMTSGHASK 312
T+K NF G A +
Sbjct: 460 --TKKGTFNFFNRGDAGQ 475
>gi|60686906|gb|AAX35542.1| DNA polymerase kappa [Xenopus laevis]
Length = 862
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 183/295 (62%), Gaps = 21/295 (7%)
Query: 30 TRKVFCKYDPNFMA-ASLDEAYLDITEVCRER--------GISGIEIAEELRTSVYEEAG 80
T + + P+F+A ++ + D TE R G S E +E+R + ++
Sbjct: 245 TSPILFEDSPSFVADQNVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTT 304
Query: 81 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR 140
LT SAG+APN +LAKVCSD NKPNGQ+ + NDR A+ FI LPIRK+ GIGKVTE +L+
Sbjct: 305 LTASAGIAPNTMLAKVCSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGIGKVTEKMLK 364
Query: 141 DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT 200
+ TC ++ Q+ +LL +FS ++ F+ + LGLGST+ + RKS+S+ERTFS
Sbjct: 365 -ALEVVTCTDLYQQRALLSLLFSETSWQNFVHISLGLGSTHVERDGERKSMSTERTFSEM 423
Query: 201 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 260
Y E+ LS D+QKEGL+G+T+T+KLK +FEVRTRA+T+ +S+ E+I
Sbjct: 424 SSAEEQYGLCQELCRDLSKDLQKEGLKGKTVTIKLKNVTFEVRTRALTVTSPVSTEEEIF 483
Query: 261 KHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAPSDPTQKTLTNFMTSG 308
A +LKAE+ P+ LRL+G+RV+ F NE++ + QK++T+F+ SG
Sbjct: 484 AVAKEILKAEIDLASPEPLQLRLMGVRVSGFLNEEEKKH----HQKSITSFLHSG 534
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 42/60 (70%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP LI VP +F KY S R++ +YDPNF+ SLDEAYLD T+ ER
Sbjct: 153 MPGFIAKKLCPALIIVPPNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYLDFTDHLSER 212
>gi|302507978|ref|XP_003015950.1| hypothetical protein ARB_06262 [Arthroderma benhamiae CBS 112371]
gi|291179518|gb|EFE35305.1| hypothetical protein ARB_06262 [Arthroderma benhamiae CBS 112371]
Length = 605
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 167/287 (58%), Gaps = 7/287 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+IT+ C
Sbjct: 168 MASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNITQYCAAN 227
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +P++R A+M F+
Sbjct: 228 NVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPSERAAIMEFM 287
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L GI TC ++ Q +L +F F + LGLG T
Sbjct: 288 TKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLFGQKAFCFLMQCYLGLGRT 346
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P F RKSI +E TF+ D L KL A L D++ +GRTL LK+K
Sbjct: 347 RIQPAGTFPRKSIGTEHTFADLSDFHELQEKLRWTASALEKDLRAAETKGRTLVLKVKLH 406
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 281
+FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 407 TFEVLSRQTVAPKPLLVADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|148234382|ref|NP_001086552.1| DNA-directed DNA polymerase kappa [Xenopus laevis]
gi|49899074|gb|AAH76794.1| Polk-prov protein [Xenopus laevis]
Length = 862
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 183/295 (62%), Gaps = 21/295 (7%)
Query: 30 TRKVFCKYDPNFMA-ASLDEAYLDITEVCRER--------GISGIEIAEELRTSVYEEAG 80
T + + P+F+A ++ + D TE R G S E +E+R + ++
Sbjct: 245 TSPILFEDSPSFVADQNVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTT 304
Query: 81 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR 140
LT SAG+APN +LAKVCSD NKPNGQ+ + NDR A+ FI LPIRK+ GIGKVTE +L+
Sbjct: 305 LTASAGIAPNMMLAKVCSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGIGKVTEKMLK 364
Query: 141 DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT 200
+ TC ++ Q+ +LL +FS ++ F+ + LGLGST+ + RKS+S+ERTFS
Sbjct: 365 -ALEVVTCTDLYQQRALLSLLFSETSWQNFVHISLGLGSTHVERDGERKSMSTERTFSEM 423
Query: 201 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 260
Y E+ LS D+QKEGL+G+T+T+KLK +FEVRTRA+T+ +S+ E+I
Sbjct: 424 SSAEEQYGLCQELCRDLSKDLQKEGLKGKTVTIKLKNVTFEVRTRALTVTSPVSTEEEIF 483
Query: 261 KHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAPSDPTQKTLTNFMTSG 308
A +LKAE+ P+ LRL+G+RV+ F NE++ + QK++T+F+ SG
Sbjct: 484 AVAKEILKAEIDLASPEPLQLRLMGVRVSGFLNEEEKKH----HQKSITSFLHSG 534
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 42/60 (70%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP LI VP +F KY S R++ +YDPNF+ SLDEAYLD T+ ER
Sbjct: 153 MPGFIAKKLCPALIIVPPNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYLDFTDHLSER 212
>gi|302666871|ref|XP_003025031.1| hypothetical protein TRV_00836 [Trichophyton verrucosum HKI 0517]
gi|291189111|gb|EFE44420.1| hypothetical protein TRV_00836 [Trichophyton verrucosum HKI 0517]
Length = 605
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 167/287 (58%), Gaps = 7/287 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+IT+ C
Sbjct: 168 MASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNITQYCAAN 227
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +P++R A+M F+
Sbjct: 228 NVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPSERAAIMEFM 287
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L GI TC ++ Q +L +F F + LGLG T
Sbjct: 288 TKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLFGQKAFCFLMQCYLGLGRT 346
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P F RKSI +E TF+ D L KL A L D++ +GRTL LK+K
Sbjct: 347 RIQPAGTFPRKSIGTEHTFADLSDFHELQEKLRWTASALEKDLRAAETKGRTLVLKVKLH 406
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 281
+FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 407 TFEVLSRQTVAPKPLLVADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|355712668|gb|AES04426.1| polymerase kappa [Mustela putorius furo]
Length = 878
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 166/265 (62%), Gaps = 14/265 (5%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 296 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRQAVMDFI 355
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI C E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 356 KDLPIRKVSGIGKVTEKMLK-ALGIINCTELYQQRALLSLLFSETSWHHFLHISLGLGST 414
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTF+ Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 415 HLTRDGERKSMSVERTFNEISKAEEQYSLCRELCSELAQDLQKEGLKGRTVTIKLKNVNF 474
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVRA 292
EV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 475 EVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPSEEDKKHQ 534
Query: 293 PSDPTQKTLTNFMTSGHASKKIVGD 317
Q+T+ F+ +G+ + GD
Sbjct: 535 -----QRTIIGFLQAGNPTLSAPGD 554
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 161 MPGFIAKRLCPQLIIVPPNFDKYKAVSTEVKEILADYDPNFMAMSLDEAYLNITKHLQER 220
>gi|384497743|gb|EIE88234.1| hypothetical protein RO3G_12945 [Rhizopus delemar RA 99-880]
Length = 524
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 170/300 (56%), Gaps = 34/300 (11%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-E 59
MPGFIA KLCP+L +P F KY S+ R VF KYDPNFM SLDEAYL++TE + E
Sbjct: 163 MPGFIALKLCPQLKMIPLHFPKYIGASNKVRAVFAKYDPNFMPMSLDEAYLNLTEYLKKE 222
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
++ E+ E++R ++E LT SA DR +++ F
Sbjct: 223 PDLTPYELVEQIRREIFESTQLTASA--------------------------DRTSIVNF 256
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L +R+I G+G+VTE +L + G++TC ++ K ++L + S F L +GLG+
Sbjct: 257 VKDLKVRQIPGVGRVTERVL-ESLGVHTCGDIYPKRAILYKLLSPINFQFLLKCYMGLGT 315
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T RKS+ ERTF+ D A LY KL E+ E L D +K G+ GR + +K+K S
Sbjct: 316 TMFNTESERKSVGVERTFTSLSDPAKLYEKLHELCEALEKDAEKAGVMGRNIGIKIKFVS 375
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF------NEDKVRAP 293
FEVR R+ TL Y+SS++DI K A LL E+P+ LRL+G+R+ +E ++AP
Sbjct: 376 FEVRIRSRTLPSYVSSAKDIEKVAKQLLANEMPMDLRLMGVRLANLKPRGSNDESVLKAP 435
>gi|402224218|gb|EJU04281.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 582
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 166/289 (57%), Gaps = 14/289 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA+KL PELI VP F++Y+ S + +YDP A DEAYL+IT+ C E
Sbjct: 149 MPMHIAKKLYPELIIVPCRFSRYSEVSKSLMSILRRYDPTMNPAGFDEAYLNITQYCSEH 208
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E + +R V++E GLT SAG+APN KP+GQF+LP DR ++ F+
Sbjct: 209 ELGAEECVQVIRDEVHKETGLTISAGIAPN-----------KPSGQFMLPFDRKGIVAFM 257
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK+ GIG+V E IL + G+ TC ++ + +++ + L LG+GS
Sbjct: 258 KDLSVRKVPGIGRVNERIL-EAIGVKTCGDIYTQRAVITLLDHELGLHGLLHAHLGIGSN 316
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P R RKS+ ERTF D + L L IAE L D ++ G G+TLTLK K
Sbjct: 317 VVEPHIREERKSVGVERTFRAVGDSSKLMEILENIAESLEEDCEQTGWAGKTLTLKYKLH 376
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
++EV TRA +L +YI S EDI S LL+ ELP+++RL+GLR+T +
Sbjct: 377 TYEVFTRARSLNRYIRSKEDIFSIGSELLRKELPLTVRLLGLRLTHLKD 425
>gi|73952201|ref|XP_536321.2| PREDICTED: DNA polymerase kappa isoform 2 [Canis lupus familiaris]
Length = 861
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 171/264 (64%), Gaps = 14/264 (5%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ VLPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 292
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE+ R
Sbjct: 465 FEVKTRASTVSSVVSTTEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKRH 524
Query: 293 PSDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ S+ G
Sbjct: 525 ----QQRSIIGFLQAGNQSQSAPG 544
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNF+A SLDEAYL+IT+ +ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYLNITKHLQER 211
>gi|344272661|ref|XP_003408150.1| PREDICTED: DNA polymerase kappa [Loxodonta africana]
Length = 864
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 157/237 (66%), Gaps = 9/237 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + +R AVM FI
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIHPNRQAVMDFI 346
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRKI GIG+VTE +L+ GI TC E+ Q+ +LL +FS ++ +FL V LGLGST
Sbjct: 347 KDLPIRKISGIGQVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHVSLGLGST 405
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +F
Sbjct: 406 HLERDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVNF 465
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDK 289
EV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 466 EVKTRASTVSSVVSTAEEIFAIAKELLRTEVDADFPHPLRLRLMGVRISSFANEEDK 522
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+ITE +ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYQAVSKEVKEILADYDPNFMAMSLDEAYLNITEHLQER 211
>gi|410948820|ref|XP_003981127.1| PREDICTED: DNA polymerase kappa [Felis catus]
Length = 863
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 181/299 (60%), Gaps = 15/299 (5%)
Query: 26 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA 85
++D+ + + +P F A S ++ I + G S E +E+R + ++ LT SA
Sbjct: 253 FNDIPPDLHPQGNP-FQANSEEQNNPQILQNAIVFGTSAEEAVKEIRFRIEQKTTLTASA 311
Query: 86 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 145
G+APN +LAKVCSD NKPNGQ+ + DR AVM FI LPIRK+ GIGKVTE +L+ G+
Sbjct: 312 GIAPNTMLAKVCSDKNKPNGQYQILPDREAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGV 370
Query: 146 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL 205
TC E+ Q+ +LL +FS ++ FL + LGLGST + RKS+S ERTFS
Sbjct: 371 ITCTELYQQRALLSLLFSETSWHHFLHISLGLGSTLLARDGDRKSMSVERTFSEMSKAEE 430
Query: 206 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 265
Y E+ L+ D+QKEGL+GRT+T+KLK +FEV+TRA T+ +S++E+I A
Sbjct: 431 QYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKD 490
Query: 266 LLKAEL------PVSLRLIGLRVTQF--NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 316
LL+ E+ P+ LRL+G+R++ F EDK + Q+++ F+ +G+ + G
Sbjct: 491 LLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKKQQ-----QRSIIGFLQAGNQALSATG 544
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+L VP +F KY S +++ YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 152 MPGFIAKRLCPQLTIVPPNFDKYQAVSREVKEILADYDPNFMAMSLDEAYLNITKHLQER 211
>gi|426197178|gb|EKV47105.1| hypothetical protein AGABI2DRAFT_69121 [Agaricus bisporus var.
bisporus H97]
Length = 425
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 153/262 (58%), Gaps = 12/262 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+KLCP+LI +P FT Y SD +F +YDPN + A DE YL+IT C E
Sbjct: 168 MAGFVAKKLCPDLILIPEHFTTYMETSDQVMSIFKRYDPNMLIAGCDEGYLNITLHCEEH 227
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S + +E+R V+EE LT SAG+APN+ NKPNGQF L DR ++ F+
Sbjct: 228 SVSAADCVQEMRRIVFEETKLTVSAGIAPNK---------NKPNGQFQLIPDRKTILAFM 278
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK+ GIG+V E +L + GI TC ++ + + + + L LG+ S
Sbjct: 279 RELSVRKVFGIGRVNERLLESI-GIKTCGDIFTHRATIALMDKQFGLHYLLKTYLGISSN 337
Query: 181 NT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
PQ RKSI SERTFS +D +L +KL IA L DM + G G+T+TLK K
Sbjct: 338 EVRPPQREERKSIGSERTFSPLDDGEVLLQKLEHIASELETDMARNGWAGKTITLKYKLD 397
Query: 239 SFEVRTRAVTLQKYISSSEDIL 260
+++V TRA +L +Y+SS ED+
Sbjct: 398 TYQVFTRAKSLDRYVSSKEDLF 419
>gi|348551130|ref|XP_003461383.1| PREDICTED: DNA polymerase kappa-like [Cavia porcellus]
Length = 853
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 165/262 (62%), Gaps = 10/262 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRQAVMEFI 346
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRKI GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 347 KDLPIRKISGIGKVTEKMLK-ALGIITCAELYQQRALLSLLFSETSWHYFLHISLGLGST 405
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTF+ Y E+ ++ D+QKEGL+GRT+T+KLK +F
Sbjct: 406 HLARDGERKSMSVERTFNEINKAEDQYSLCQELCSEIAQDLQKEGLKGRTVTVKLKNVNF 465
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F + A
Sbjct: 466 EVKTRASTVSSVVSTEEEIFAIAKELLRTEIDAASPYPLRLRLMGVRISSFPSE---ADK 522
Query: 295 DPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 523 KHQQRSIIGFLQAGNQALSAPG 544
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYS 27
MPGFIA++LCP LI VP +F KY S
Sbjct: 152 MPGFIAKRLCPHLIIVPLNFDKYRVVS 178
>gi|31127116|gb|AAH52820.1| Polk protein [Mus musculus]
Length = 739
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 166/262 (63%), Gaps = 10/262 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 150 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 209
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 210 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 268
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 269 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 328
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 329 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 388
Query: 295 DPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ +G+ + G
Sbjct: 389 ---QRSIIGFLQAGNQALSSTG 407
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 34 FCKYDPNFMAASLDEAYLDITEVCRER 60
F +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 48 FYEYDPNFMAMSLDEAYLNITQHLQER 74
>gi|403367013|gb|EJY83315.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 699
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 177/291 (60%), Gaps = 9/291 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+L+ V +F KY S + + + +YDP+F + DEA LD+T
Sbjct: 168 MPGFIAKKLCPDLVLVECNFKKYKEVSKVFQAILYEYDPHFESMGSDEANLDLTNYLITH 227
Query: 61 GIS----GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
++ +++AEE+RT ++E LTCSAG++ N++LAK+C+D+NKPNGQF L D+ +
Sbjct: 228 NLNDEDNKLKVAEEIRTKIFEATQLTCSAGISCNKMLAKICTDMNKPNGQFYLKPDKEVI 287
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
+ F+ L +RKI GIG++TE +L+ + GI TC++++ K + +FS T+ F + LG
Sbjct: 288 LDFMGKLKVRKIPGIGRMTELVLQSL-GIETCQQIIDKAPEIQIIFSEKTSYFLIRAALG 346
Query: 177 LGST---NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
+ +KSIS TF K++EI E L+ M K + G T+TL
Sbjct: 347 IARNFHEEDDDDACQKSISVSTTFRPLYKLDQFKDKISEICEDLAQRMDKRKIGGLTITL 406
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVT 283
+LK+ F +++TL +YI +SED+ + LL+ + P ++RLIG++++
Sbjct: 407 ELKSTEFNNVNKSMTLNRYIWTSEDMRTYCHQLLEMQWPFPAVRLIGVKMS 457
>gi|156121161|ref|NP_001095728.1| DNA polymerase kappa [Bos taurus]
gi|151555691|gb|AAI49025.1| POLK protein [Bos taurus]
gi|296483771|tpg|DAA25886.1| TPA: DNA-directed DNA polymerase kappa [Bos taurus]
Length = 877
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 170/264 (64%), Gaps = 14/264 (5%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +
Sbjct: 412 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 471
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 292
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGFPNEEEKKH 531
Query: 293 PSDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ G+ + G
Sbjct: 532 ----QQRSIIGFLQPGNQALSATG 551
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 159 MPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYLNITKHLEER 218
>gi|426232466|ref|XP_004010243.1| PREDICTED: DNA polymerase kappa [Ovis aries]
Length = 871
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 170/264 (64%), Gaps = 14/264 (5%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 292
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 465 FEVKTRASTVPAVVSTAEEIFVIAKELLRTEIDADFPHPLRLRLMGVRLSGFPNEEEKKH 524
Query: 293 PSDPTQKTLTNFMTSGHASKKIVG 316
Q+++ F+ G+ + G
Sbjct: 525 ----QQRSIIGFLQPGNQALPATG 544
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYLNITKHLEER 211
>gi|134105174|pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase
gi|134105175|pdb|2OH2|B Chain B, Ternary Complex Of Human Dna Polymerase
gi|240104255|pdb|2W7O|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104256|pdb|2W7O|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104261|pdb|2W7P|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104262|pdb|2W7P|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|257472029|pdb|3IN5|A Chain A, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
gi|257472030|pdb|3IN5|B Chain B, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
Length = 508
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 269 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 327
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 328 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 386
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 387 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 446
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 447 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 504
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 134 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 193
>gi|50838893|gb|AAT81654.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa Japonica Group]
Length = 291
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 114/128 (89%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPNF+A SLDEAYL+IT+VC +R
Sbjct: 152 MPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPNFVATSLDEAYLNITKVCFDR 211
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDINKPNGQF+LPND+ AV TF+
Sbjct: 212 GITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDQEAVTTFV 271
Query: 121 SSLPIRKI 128
S+LPIRK+
Sbjct: 272 STLPIRKV 279
>gi|52695703|pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
gi|52695704|pdb|1T94|B Chain B, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
Length = 459
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 220 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 278
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 279 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 337
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 338 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 397
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 398 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 455
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 85 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 144
>gi|365812957|pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
gi|365812958|pdb|3PZP|B Chain B, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
Length = 517
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 276 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 334
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 335 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 393
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 394 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 453
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 291
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 454 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 511
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 141 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 200
>gi|409044729|gb|EKM54210.1| hypothetical protein PHACADRAFT_145933 [Phanerochaete carnosa
HHB-10118-sp]
Length = 589
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 173/295 (58%), Gaps = 4/295 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+ARKLCP+L+ VP F++Y S +F +YDP AA DE YL+IT C E
Sbjct: 153 MAEFVARKLCPQLVVVPCHFSRYMELSRQVMDIFRRYDPTMCAAGCDEGYLNITPYCEEY 212
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S + +R +V+ E LT SAG+APN++LAK+CSD NKPNGQF L AV F+
Sbjct: 213 MLSADDCVRGMRETVFRETKLTVSAGIAPNKVLAKICSDRNKPNGQFALDFTPAAVKAFM 272
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS- 179
L IRKI G+G+V E +L D GI TC ++ + L + + F L LG+ S
Sbjct: 273 HDLSIRKIPGVGRVNERLL-DSVGIQTCGDIYTHRATLALMDKYFGLHFLLQTYLGIASN 331
Query: 180 -TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
Q RKSI +ERTF K + RKL E+A L+ D+++ G G+T+TLK K
Sbjct: 332 VVQPGQREERKSIGAERTFHTISSKEDILRKLEEVAAELNEDLERTGWTGKTVTLKYKLD 391
Query: 239 SFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRA 292
+++V TRA + ++IS+ ED+ LL ELP+ LRLIGLRV + + +V A
Sbjct: 392 TYQVFTRAKSFDRWISTKKEDLFATGKELLLPELPLRLRLIGLRVMKLKDLRVDA 446
>gi|242206923|ref|XP_002469316.1| predicted protein [Postia placenta Mad-698-R]
gi|220731571|gb|EED85414.1| predicted protein [Postia placenta Mad-698-R]
Length = 527
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 177/311 (56%), Gaps = 15/311 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+KLCP+LI V F +Y S +F +YDP+ AA DE YL+IT CR++
Sbjct: 131 MPSFIAKKLCPDLILVENHFHRYMELSKKVMNIFRRYDPSMCAAGCDEGYLNITAYCRDQ 190
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ E ++R +VY+E LT SAG+APN+ NKPNGQF L + A+ F+
Sbjct: 191 QLTADECVRQMRETVYQETKLTVSAGIAPNK---------NKPNGQFTLDFEPRAIKAFM 241
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS- 179
+L IRKI G+G+V E +L D GI TC ++ ++ + F L LG+ S
Sbjct: 242 RNLSIRKIPGVGRVNERLL-DSIGIKTCGDIYTHRVVVSLMDKEFGLQFLLQTYLGIASN 300
Query: 180 -TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
Q RKSI +ERTF ++ + KL E+A L +DM G G+T+TLK K
Sbjct: 301 VVQPGQREERKSIGAERTFHPLGNQDAILCKLEEVAAELESDMTSGGWTGKTVTLKFKLD 360
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQ 298
+++V TRA + +++S+ ++ L +A LL E+P++LRLIGLRVT+ + +R S+
Sbjct: 361 TYQVFTRAKSFDRWVSTKKEDL-YAVKLLMPEMPLTLRLIGLRVTKLKD--LRVESEKKA 417
Query: 299 KTLTNFMTSGH 309
+ F S +
Sbjct: 418 SGIKRFFQSAN 428
>gi|196001133|ref|XP_002110434.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
gi|190586385|gb|EDV26438.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
Length = 653
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 193/367 (52%), Gaps = 68/367 (18%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI ++LCP+L+FV + KY S R + +YDPNF + SLDEAY+D+TE R
Sbjct: 137 MPGFIGKRLCPDLVFVKPNSAKYAQASKEVRAILAEYDPNFASVSLDEAYMDLTEYLEGR 196
Query: 61 G--------------------------------ISGIE---------------------- 66
+ G++
Sbjct: 197 KCTFPSSHVEFTVPQQDLTEDMLKILNEVAPPTVDGVDSYNNCSSNSSIRKVSFGHTIED 256
Query: 67 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 126
+ E+R + + LT SAG+ PN++LAK+CSD KPNGQF + R ++ F+ LP R
Sbjct: 257 VMREIRFKINRKTKLTASAGIGPNKMLAKICSDWKKPNGQFKVEFTRDKIIEFMRQLPTR 316
Query: 127 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 186
KI GIGKV+E +L ++ I+ C+E+ K L+ +FS+ + FFL+V +G+GS
Sbjct: 317 KISGIGKVSERLLNEI-EISNCKELYDKRDLIYLLFSNVSTKFFLAVAMGIGSNEVSSKN 375
Query: 187 F-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 245
+ RKSIS ERTF A + K ++ + L+ M+KE + GR LT+KLKT +FEV+ R
Sbjct: 376 YQRKSISCERTFGEISRLADMLVKCQKLCDNLANHMKKENITGRCLTVKLKTVAFEVKQR 435
Query: 246 AVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPSD--PT 297
+V+L+ + +S+ ++ AS ++++E + LRL+G++++ R SD
Sbjct: 436 SVSLKHHTNSTTEMFNIASEVIRSERLACQPERLRLRLMGIKMSTLK----RHESDEKSI 491
Query: 298 QKTLTNF 304
Q TLT +
Sbjct: 492 QDTLTRY 498
>gi|115402397|ref|XP_001217275.1| hypothetical protein ATEG_08689 [Aspergillus terreus NIH2624]
gi|114189121|gb|EAU30821.1| hypothetical protein ATEG_08689 [Aspergillus terreus NIH2624]
Length = 540
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 183/328 (55%), Gaps = 16/328 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL+IT C E
Sbjct: 100 MASFVAKKLCPQLILLPQNYDKYTAKAQEIRAIFTQYDPLFESASIDEAYLNITAYCLEN 159
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E+ +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PNDR A+M F+
Sbjct: 160 NLGPEEVVSRMRAEVLEKTQISVSAGIAANAKIAKIASNRNKPNGQFCVPNDRDAIMEFM 219
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ G+G+V E L D G+ TC ++ +LL +F F LGLG T
Sbjct: 220 RELPVRKVNGVGRVFEREL-DAIGVKTCGDIYPARALLAKLFGEKAFQFLAQCYLGLGRT 278
Query: 181 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TFS K KL +A+ L D+ + +GRTL LK+K A
Sbjct: 279 KIQPVENYERKSVGTETTFSEIGTKEEFRAKLLWVAQELEKDLARTQFKGRTLVLKVKLA 338
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPS 294
+FEV TR + +S ++D+ A + L+ E+P + LRL+GLR T
Sbjct: 339 TFEVLTRQYQPPRAVSVAKDLYAFALPMLEKLEKEIPNMKLRLLGLRCTHLVS------- 391
Query: 295 DPTQKTLTNFMTSGHASKKIVGDQNSLG 322
T+K +F + K G +S G
Sbjct: 392 --TKKAGIDFFGWARSGKPSTGSADSSG 417
>gi|358375860|dbj|GAA92435.1| DNA-directed polymerase kappa [Aspergillus kawachii IFO 4308]
Length = 602
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 176/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL++T C E
Sbjct: 164 MASFVAKKLCPQLICLPQNYEKYTEKAKEIRAIFAQYDPTFESASIDEAYLNLTAYCTEN 223
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PN+R A+M F+
Sbjct: 224 ELDPEEAVQRMRAEVLEKTKISVSAGIAANAKIAKIASNKNKPNGQFCVPNEREAIMRFM 283
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ G+G+V E L D GI TC ++ + ++L +F F + LGLG T
Sbjct: 284 EELPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRAILTKLFGEKAFHFLMQCYLGLGRT 342
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +ERTF +K KL IAE L D+ + +GRTL LK+K A
Sbjct: 343 KIQPVENYERKSVGTERTFHEIGNKEEFRAKLWSIAEELEKDLARTEFKGRTLVLKVKLA 402
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV +R + +S+++D+ + + L+ E+P + +RL+GLR T
Sbjct: 403 TFEVLSRQCQPPRAVSTAKDLYAFSLPMLEKLEKEMPDLKMRLLGLRCTNL 453
>gi|145246060|ref|XP_001395279.1| DNA-directed polymerase kappa [Aspergillus niger CBS 513.88]
gi|134079991|emb|CAK48475.1| unnamed protein product [Aspergillus niger]
Length = 604
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 176/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL++T C E
Sbjct: 164 MASFVAKKLCPQLICLPQNYEKYTAKAKEIRAIFAQYDPTFESASIDEAYLNLTAYCTEN 223
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PN+R A+M F+
Sbjct: 224 ELDPEEAVQRMRAEVLEKTKISVSAGIAANAKIAKIASNKNKPNGQFCVPNEREAIMKFM 283
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ G+G+V E L D GI TC ++ + ++L +F F + LGLG T
Sbjct: 284 EELPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRAILTKLFGEKAFHFLVQCYLGLGRT 342
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +ERTF +K KL IAE L D+ + +GRTL LK+K A
Sbjct: 343 KIQPVENYERKSVGTERTFHEIGNKEEFRAKLWSIAEELEKDLARTEFKGRTLVLKVKLA 402
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV +R + +S+++D+ + + L+ E+P + +RL+GLR T
Sbjct: 403 TFEVLSRQCQPPRAVSTAKDLYAFSLPMLEKLEKEMPDLKMRLLGLRCTNL 453
>gi|425778909|gb|EKV17010.1| DNA-directed polymerase kappa, putative [Penicillium digitatum
PHI26]
Length = 621
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 174/311 (55%), Gaps = 16/311 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+L+ +P ++ KYT + R + +YDP F +AS+DEAYL+IT C E
Sbjct: 168 MASFVAKKLCPQLVLLPPNYDKYTTKAKEIRAIIAEYDPLFESASIDEAYLNITAYCDEN 227
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
E+ + LR + E ++ SAG+ N +AK+ S++NKPNGQF +PN+R A+M F+
Sbjct: 228 HREPDEVVQRLRAEILETTEVSVSAGIGANAKIAKIASNLNKPNGQFQVPNEREAIMDFM 287
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ GIG+ E L+ + GI C ++ + L +F F LGLG T
Sbjct: 288 CDLPVRKVNGIGRAFERELKSI-GIEKCGDIFHHRAFLTKLFGEKAFQFLAQCYLGLGRT 346
Query: 181 NTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ + RKS+S+E TF DK L KL A+ L+ D+ + +GRTL LK+K
Sbjct: 347 KIEPVETQVRKSVSTETTFHDIGDKEELRAKLWWAAQELAKDLARTQFKGRTLALKVKLH 406
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPS 294
+FEV TR + +S ++D+ A + L+ ++P + LRL+GLR +
Sbjct: 407 TFEVLTRQTAPSRAVSLAKDLYSFALPMLAKLEKDIPNLKLRLLGLRCSNLVS------- 459
Query: 295 DPTQKTLTNFM 305
TQK NF
Sbjct: 460 --TQKVGINFF 468
>gi|425773335|gb|EKV11693.1| DNA-directed polymerase kappa, putative [Penicillium digitatum Pd1]
Length = 621
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 174/311 (55%), Gaps = 16/311 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+L+ +P ++ KYT + R + +YDP F +AS+DEAYL+IT C E
Sbjct: 168 MASFVAKKLCPQLVLLPPNYDKYTTKAKEIRAIIAEYDPLFESASIDEAYLNITAYCDEN 227
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
E+ + LR + E ++ SAG+ N +AK+ S++NKPNGQF +PN+R A+M F+
Sbjct: 228 HREPDEVVQRLRAEILETTEVSVSAGIGANAKIAKIASNLNKPNGQFQVPNEREAIMDFM 287
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ GIG+ E L+ + GI C ++ + L +F F LGLG T
Sbjct: 288 CDLPVRKVNGIGRAFERELKSI-GIEKCGDIFHHRAFLTKLFGEKAFQFLAQCYLGLGRT 346
Query: 181 NTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ + RKS+S+E TF DK L KL A+ L+ D+ + +GRTL LK+K
Sbjct: 347 KIEPVETQVRKSVSTETTFHDIGDKEELRAKLWWAAQELAKDLARTQFKGRTLALKVKLH 406
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPS 294
+FEV TR + +S ++D+ A + L+ ++P + LRL+GLR +
Sbjct: 407 TFEVLTRQTAPSRAVSLAKDLYSFALPMLAKLEKDIPNLKLRLLGLRCSNLVS------- 459
Query: 295 DPTQKTLTNFM 305
TQK NF
Sbjct: 460 --TQKVGINFF 468
>gi|449278668|gb|EMC86459.1| DNA polymerase kappa, partial [Columba livia]
Length = 864
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 166/254 (65%), Gaps = 10/254 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ +P +R AV+ F+
Sbjct: 278 GNSAEEVVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDCNKPNGQYKIPPERQAVLDFL 337
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 338 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRNFLDISLGLGST 396
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S+ERTFS Y E+ L+ ++QKEGL+G+T+TLKLK +F
Sbjct: 397 HLERDGERKSMSTERTFSEMNTAEDQYSLCRELCRDLAQELQKEGLKGKTVTLKLKNVNF 456
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ +S+ E+I A LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 457 EVKTRASTVLSSVSTEEEIFAVAKDLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEKKYQ 516
Query: 295 DPTQKTLTNFMTSG 308
QK++T+F+ SG
Sbjct: 517 ---QKSITSFLKSG 527
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 41/60 (68%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP L VP +F KY S R++ +YDPNFM LDEAYL++TE ER
Sbjct: 151 MPGFIAKKLCPHLTIVPLNFEKYGKVSKEVREILSEYDPNFMPMGLDEAYLNLTEHLEER 210
>gi|452818943|gb|EME26075.1| DNA polymerase kappa subunit [Galdieria sulphuraria]
Length = 537
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 171/281 (60%), Gaps = 2/281 (0%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA KLCP+L+ VP F +Y S+ + K+D S+DEAY+DITE + +
Sbjct: 142 MPGFIALKLCPQLVIVPPRFKRYCQVSNQIASLLYKFDSR-AHMSMDEAYIDITEYLKTQ 200
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G ++ ++R +++E G+TCSAGVA N ++AK+ +D+NKPNGQ ++ D + + F+
Sbjct: 201 GGVVEDVVSKIRQNIFENTGITCSAGVASNTMIAKIATDLNKPNGQTIVQPDMVCIQNFL 260
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ L +RKI G+G+VTE +L + I ++++ S+L T +F L LG+
Sbjct: 261 NPLSVRKIPGVGRVTEKLLSSL-NIFCIQDIISHRSVLFHCMRRKTFEFLLQSALGIAPA 319
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
++ RK +S ERTF T L + ++++L+ D++ E + +TLTLK+K + F
Sbjct: 320 FICESESRKGMSRERTFKPTSSLEELRKICESVSKLLADDLEAEDMYAKTLTLKIKCSDF 379
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 281
VRTRAVT +I E IL++A LL E+P+ +RL+G+R
Sbjct: 380 SVRTRAVTKCFFIYRYEQILENAWKLLLKEMPIEIRLLGVR 420
>gi|154322288|ref|XP_001560459.1| hypothetical protein BC1G_01291 [Botryotinia fuckeliana B05.10]
Length = 624
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 167/291 (57%), Gaps = 20/291 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP+LI VP +F KYT + R++ YDP F +AS+DEAYL+ITE C++
Sbjct: 154 MAGFIAKKLCPQLIQVPLNFDKYTAKAQEVREILVDYDPRFESASIDEAYLNITEYCQKN 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E+LR V+E+ AK+CS+ NKPNGQ+ + N+R+ +M F+
Sbjct: 214 DIDPEAAVEQLRREVHEKTK-------------AKICSNYNKPNGQYRVANNRVEIMKFM 260
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RK+ GIG+V E L G+ TC ++ L +F F + LGLG T
Sbjct: 261 RDLPTRKVNGIGRVFEREL-GAIGVKTCGDIYNVRHYLPKLFGEKAFIFLMQCYLGLGRT 319
Query: 181 NTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ A RKS+ +E TF+ D L KL AE L D+Q+ +GRTL LK+K
Sbjct: 320 DVKPAEEYTRKSVGTEGTFNDINDATELRSKLRHTAEELEKDLQRTQFKGRTLVLKVKLK 379
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
++EV TR K + S++D+ K++ + L+AE+P ++LRL+GLR T
Sbjct: 380 TYEVLTRQAAPPKAVFSADDLYKYSLPMLEKLEAEMPGLTLRLMGLRCTNL 430
>gi|350637497|gb|EHA25854.1| hypothetical protein ASPNIDRAFT_189582 [Aspergillus niger ATCC
1015]
Length = 604
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 176/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +AS+DEAYL++T C E
Sbjct: 164 MASFVAKKLCPQLICLPQNYEKYTAKAKEIRAIFAQYDPTFESASIDEAYLNLTAYCTEN 223
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PN+R A+M F+
Sbjct: 224 ELDPEEAVQRMRAEVLEKTKISVSAGIAANAKIAKIASNKNKPNGQFCVPNEREAIMKFM 283
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ G+G+V E L D GI +C ++ + ++L +F F + LGLG T
Sbjct: 284 EELPVRKVNGVGRVFEREL-DAIGIKSCGDIYPQRAILTKLFGEKAFHFLVQCYLGLGRT 342
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +ERTF +K KL IAE L D+ + +GRTL LK+K A
Sbjct: 343 KIQPVENYERKSVGTERTFHEIGNKEEFRAKLWSIAEELEKDLARTEFKGRTLVLKVKLA 402
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV +R + +S+++D+ + + L+ E+P + +RL+GLR T
Sbjct: 403 TFEVLSRQCQPPRAVSTAKDLYAFSLPMLEKLEKEMPDLKMRLLGLRCTNL 453
>gi|432875108|ref|XP_004072678.1| PREDICTED: DNA polymerase kappa-like [Oryzias latipes]
Length = 871
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 165/264 (62%), Gaps = 11/264 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP R AVM FI
Sbjct: 275 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPPTREAVMDFI 334
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ GIGKV+E +L + I C + Q+ +LL +FS + F+ V LGLGST
Sbjct: 335 QDLPVRKVCGIGKVSEKML-NALEITKCSHLGQQMALLSLLFSETACQNFMEVSLGLGST 393
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ RKS+S ERTF D Y E+ + L+ DM+KEGL+G+T++LKLK +F
Sbjct: 394 RISRHEERKSMSIERTFKELSDAEEQYSLCRELCKDLAEDMKKEGLKGKTVSLKLKNVNF 453
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA TLQ +++ E++ A LLK E+ P+ LRL+G+R++ F +A
Sbjct: 454 EVKTRAQTLQCAVAAEEELFAVAKDLLKTEIDNESPHPLKLRLMGVRMSAFVSSDHKA-- 511
Query: 295 DPTQKTLTNFMTSGHA-SKKIVGD 317
PTQK++ F+ SG + S +I G+
Sbjct: 512 -PTQKSILGFLKSGSSGSSEIKGE 534
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLC +L+ VP +F KY SD R++F YDP+F+ SLDEAYLD TE +R
Sbjct: 150 MPGFIAKKLCSDLVIVPPNFDKYRAVSDEIREIFADYDPDFLPMSLDEAYLDFTEHLEQR 209
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPN 90
E LRT Y +T + PN
Sbjct: 210 QT----WPESLRTHRYSSKSITTAVKETPN 235
>gi|336371762|gb|EGO00102.1| hypothetical protein SERLA73DRAFT_53034 [Serpula lacrymans var.
lacrymans S7.3]
Length = 446
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 109/265 (41%), Positives = 154/265 (58%), Gaps = 15/265 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCPELI V +FT+Y SD +F +YDPN +AA DE YL+IT C E
Sbjct: 154 MPGFIAKKLCPELILVNINFTRYQEMSDKVMDIFRRYDPNMLAAGCDEGYLNITAYCEEH 213
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +E+R V++E LT SAG+APN+ NKPNGQF LP DR ++ +F+
Sbjct: 214 NLDPQACVQEMRAFVHKETNLTVSAGIAPNK---------NKPNGQFYLPFDRESIKSFM 264
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIR+I G+G+V E +L D GI TC ++ + L + F L + LG+ S
Sbjct: 265 QDLPIRRIPGVGRVNERLL-DAIGIKTCGDIYTHRATLSLMDKQFGLQFLLRIHLGIASN 323
Query: 181 NT-PQARFRKSISSE----RTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
P R + I+S RTFS D+ + KL E+A L D ++ G G+T+TLK
Sbjct: 324 VVEPGKREERKIASAKVHFRTFSTLSDRQQILNKLEEVAAELEDDTERNGWTGKTVTLKY 383
Query: 236 KTASFEVRTRAVTLQKYISSSEDIL 260
K +++V TRA + ++IS+ +D L
Sbjct: 384 KLNTYQVYTRAKSFDRWISTKKDDL 408
>gi|296818533|ref|XP_002849603.1| DNA polymerase kappa [Arthroderma otae CBS 113480]
gi|238840056|gb|EEQ29718.1| DNA polymerase kappa [Arthroderma otae CBS 113480]
Length = 612
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 168/298 (56%), Gaps = 7/298 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KY + R + YDP+F +AS+DEAYL+IT+ C
Sbjct: 171 MASFVAKKLCPQLICIPQNYDKYNAKAREIRAILANYDPDFESASVDEAYLNITQYCATN 230
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++LR + + +T SAG+A N +AK+ S+ NKPNGQF +P++R A+M F+
Sbjct: 231 NVDPQAAVQQLRDEIAAQTRVTVSAGIAANAKIAKISSNWNKPNGQFHVPSERAAIMEFM 290
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L GI TC ++ Q +L +F H F + LGLG T
Sbjct: 291 AKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQFRGMLTQLFGHKAFCFLMQCYLGLGRT 349
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P F RKSI +E TF+ D L KL A L D++ +GRTL LK+K
Sbjct: 350 RIQPAGTFPRKSIGTEHTFADLGDLHQLQEKLKWTASELEKDLRSAETKGRTLVLKVKLH 409
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQFNEDKVRA 292
+FEV +R K + + D+ K++ LL K + +RL+GLR T K A
Sbjct: 410 TFEVLSRQTVAPKPLMLAGDLYKYSLPLLAKLYKERPQMKIRLMGLRCTNLVSTKREA 467
>gi|320033815|gb|EFW15761.1| DNA-directed polymerase kappa [Coccidioides posadasii str.
Silveira]
Length = 609
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R + YDP F +AS+DEAYL+ITE C
Sbjct: 159 MASFVAKKLCPQLICLPQNYAKYTAKAKEIRAILANYDPQFESASIDEAYLNITEYCLTN 218
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E ++LR + E +T SAG+A N +AK+ S+ NKPNGQF +P+DR A+M F+
Sbjct: 219 NMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNKPNGQFYVPSDRAAIMEFM 278
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L V GI C ++ +L +F F + LGLG T
Sbjct: 279 AKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLFGQKAFQFLMQCYLGLGRT 337
Query: 181 NTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
N A R RKS+ +ERTF E A L KL A L D++ +GRTL LK+K
Sbjct: 338 NIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERDLRVAEFKGRTLVLKIKLH 397
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQF 285
+FE+ +R V K + ++D+ K+A LL E P + +RL+GLR T
Sbjct: 398 TFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIRLMGLRCTNL 448
>gi|224091441|ref|XP_002187639.1| PREDICTED: DNA polymerase kappa-like, partial [Taeniopygia guttata]
Length = 633
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 169/257 (65%), Gaps = 16/257 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ + +R+AV+ F+
Sbjct: 47 GTSAEEVVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDHNKPNGQYRISPERLAVLDFL 106
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS + FL + LGLGST
Sbjct: 107 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEVSWRNFLDISLGLGST 165
Query: 181 NTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ + RKS+S+ERTFS ED+ L R E+ L+ D+QKEGL+G+T+TLKLK
Sbjct: 166 HLEKDGERKSMSTERTFSEINTAEDQYSLCR---ELCRDLAQDLQKEGLKGKTVTLKLKN 222
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 291
+FEV+TRA T+ +S+ E+I A LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 223 VNFEVKTRASTVLSSVSTEEEIFTVAKDLLGTEINSVAPHPLRIRLMGVRVSGFLTEEEK 282
Query: 292 APSDPTQKTLTNFMTSG 308
QK++T+F+ SG
Sbjct: 283 KYQ---QKSITSFLKSG 296
>gi|303309978|ref|XP_003065002.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240104661|gb|EER22857.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 609
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R + YDP F +AS+DEAYL+ITE C
Sbjct: 159 MASFVAKKLCPQLICLPQNYAKYTAKAKEIRAILANYDPQFESASIDEAYLNITEYCLTN 218
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E ++LR + E +T SAG+A N +AK+ S+ NKPNGQF +P+DR A+M F+
Sbjct: 219 NMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNKPNGQFYVPSDRAAIMEFM 278
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L V GI C ++ +L +F F + LGLG T
Sbjct: 279 AKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLFGQKAFQFLMQCYLGLGRT 337
Query: 181 NTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
N A R RKS+ +ERTF E A L KL A L D++ +GRTL LK+K
Sbjct: 338 NIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERDLRVAEFKGRTLVLKIKLH 397
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQF 285
+FE+ +R V K + ++D+ K+A LL E P + +RL+GLR T
Sbjct: 398 TFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIRLMGLRCTNL 448
>gi|341895662|gb|EGT51597.1| CBN-POLK-1 protein [Caenorhabditis brenneri]
Length = 589
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 198/381 (51%), Gaps = 73/381 (19%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYT------------------------YYSDLT------ 30
MPGFI++KLCPEL VP ++ KYT Y DLT
Sbjct: 134 MPGFISKKLCPELTLVPGNYPKYTKVSRQFSEIFMEYDGDVGMMSLDEAYIDLTEYVANR 193
Query: 31 --RKVFCKYD-----PNFMAASLDE---------------------AYLDITEVCRERGI 62
+++F ++ P ++ ++ AY D E G+
Sbjct: 194 TEKRIFTRHRYGGDCPCWLPRVPEDEDIENLQFEDSECTKCSKNRRAYFDDVEF----GV 249
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 122
E+ E+R V + GLTCSAG+A N +LAK+CSD NKPNGQFVL NDR ++ F+
Sbjct: 250 GREEVVREMRFRVEQLTGLTCSAGIAANFMLAKICSDFNKPNGQFVLENDRNVILEFLEK 309
Query: 123 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 182
LPIRK+GGIG+V+E L+ + I T +ML + +L FS + FL LGL +
Sbjct: 310 LPIRKVGGIGRVSEAHLQSM-DIRTVGDMLLQKALFPLCFSPLAQESFLRTALGLPGRPS 368
Query: 183 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG-LRGRTLTLKLKTASFE 241
RKSIS ERTFS T D +L EI +ML D++K G + G+T+TLKLK +SF+
Sbjct: 369 SSDPRRKSISVERTFSPTSDFQMLCDVHLEICQMLEEDIRKAGVIGGKTITLKLKLSSFD 428
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPSDPTQK 299
V TR++T +SS EDI K++ LL+ E +RL+G+R++Q F E+K K
Sbjct: 429 VLTRSLTPSDTVSSLEDIQKYSLELLEKEKGKEIRLLGVRLSQLVFEEEK-------KSK 481
Query: 300 TLTNFMTSGHASKKIVGDQNS 320
T+T+F K + +++
Sbjct: 482 TITDFWNDAKQQKPLSSPEDA 502
>gi|324505143|gb|ADY42216.1| DNA polymerase kappa [Ascaris suum]
Length = 641
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 198/374 (52%), Gaps = 73/374 (19%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE----- 55
MPGFI RKLCPEL VP DF KY S RKVF +YD NF SLDEAYLDI+E
Sbjct: 134 MPGFIGRKLCPELKIVPCDFHKYRAASHEVRKVFEEYDSNFQMGSLDEAYLDISEYALTR 193
Query: 56 ---------------VCR--------------------------ERGIS-------GIEI 67
+CR + IS G +I
Sbjct: 194 LEPVERARIRYTGDCICRLPLLTEDEKEEMKNAKVSEELCGKCGKMRISVCDMVCFGTDI 253
Query: 68 AE---ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
E ELR V + GLTCSAG+APN ++AK+CSDINKPNGQF + N + AV+ F+ LP
Sbjct: 254 EEIVRELRFRVEQATGLTCSAGIAPNSMIAKICSDINKPNGQFRIANSKEAVLKFMRDLP 313
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP- 183
IRK+ GIG VTE IL+ + + C ++ +K +++ +F+ + + FL + LG+ ++ T
Sbjct: 314 IRKVSGIGAVTEAILKGI-EVEKCGDLYEKRAIISLLFTRCSYEHFLRIALGISTSYTSF 372
Query: 184 ----QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLKLKTA 238
+ RKSIS ERTF T D +LL + L + K +R G + T+K+K +
Sbjct: 373 VTSEKESRRKSISVERTFHPTGDISLLIEITESLCNELIESLSKRLIRGGYSATVKMKFS 432
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQ--FNEDKVRAP 293
+F+V TR V++ I ++ +++ EL LRL+G+R+++ F +DKV
Sbjct: 433 TFDVITRCVSVDYVICDISHLMPLCERIIRNELREGNKQLRLLGVRLSRLLFIDDKVE-- 490
Query: 294 SDPTQKTLTNFMTS 307
+ K+LT+F ++
Sbjct: 491 ---SMKSLTSFWSN 501
>gi|119178590|ref|XP_001240956.1| hypothetical protein CIMG_08119 [Coccidioides immitis RS]
gi|392867079|gb|EAS29729.2| DNA-directed polymerase kappa [Coccidioides immitis RS]
Length = 609
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+LI +P ++ KYT + R + YDP F +AS+DEAYL+ITE C
Sbjct: 159 MASFVAKKLCPQLICLPQNYAKYTAKAKEIRAILANYDPQFESASIDEAYLNITEYCLTN 218
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E ++LR + E +T SAG+A N +AK+ S+ NKPNGQF +P+DR A+M F+
Sbjct: 219 NMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNKPNGQFYVPSDRAAIMEFM 278
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L V GI C ++ +L +F F + LGLG T
Sbjct: 279 AKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLFGQKAFQFLMQCYLGLGRT 337
Query: 181 NTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ A R RKS+ +ERTF E A L KL A L D++ +GRTL LK+K
Sbjct: 338 DIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERDLRVAEFKGRTLVLKIKLH 397
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQF 285
+FE+ +R V K + ++D+ K+A LL E P + +RL+GLR T
Sbjct: 398 TFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIRLMGLRCTNL 448
>gi|440910682|gb|ELR60452.1| DNA polymerase kappa [Bos grunniens mutus]
Length = 884
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/272 (43%), Positives = 169/272 (62%), Gaps = 22/272 (8%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 180 TNTPQARF--------RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
T+ RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+
Sbjct: 412 THLASLFIFFISRDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTV 471
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 285
T+KLK +FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F
Sbjct: 472 TIKLKNVNFEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGF 531
Query: 286 -NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 316
NE++ + Q+++ F+ G+ + G
Sbjct: 532 PNEEEKKH----QQRSIIGFLQPGNQALSATG 559
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 159 MPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYLNITKHLEER 218
>gi|340505987|gb|EGR32239.1| hypothetical protein IMG5_090780 [Ichthyophthirius multifiliis]
Length = 490
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 152/245 (62%), Gaps = 5/245 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+LI +P D KY YS + + + +YDPN LDEA LD+T+ +
Sbjct: 168 MPGFIAKKLCPQLILIPCDQEKYQKYSKIFKNILIQYDPNMEGMGLDEANLDLTDYLKNN 227
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
I E + ++R + +E GLTCS G+A N++LAK+CSD NKPNGQF L N+ +
Sbjct: 228 NIEKDEDIYDLCYQIRQKINKETGLTCSCGIAANKMLAKICSDQNKPNGQFQLKNNAQEI 287
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
FI +L IRKI GIG VTE IL+ + GI C+++L+K + + FS +T ++ + LG
Sbjct: 288 KDFIGNLQIRKIPGIGNVTEQILKGI-GIEKCQDLLKKTADVKISFSENTYEYLIFSALG 346
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+G + + ++SIS RTF+ + + + K+ +A+ L+ D+ E + G+ +++ +K
Sbjct: 347 IGRNEHTEEKEKQSISVSRTFTRIQGEEEIKEKICLLAQYLAEDVLYENVWGKNISVTVK 406
Query: 237 TASFE 241
A FE
Sbjct: 407 NAKFE 411
>gi|327262983|ref|XP_003216301.1| PREDICTED: DNA polymerase kappa-like [Anolis carolinensis]
Length = 820
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 17/263 (6%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E EE+R + ++ LT SAG+APN +LAK+CSD NKPNGQF + DR VM FI
Sbjct: 269 GTSAEEAVEEIRFRIEQKTKLTASAGIAPNTMLAKMCSDQNKPNGQFRISPDREHVMNFI 328
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +LR GI TC ++ Q+ +L+ +FS ++ FL + LGLGST
Sbjct: 329 KDLPIRKVPGIGKVTEKMLR-ALGIVTCTDLYQQRALISLLFSETSWHNFLEISLGLGST 387
Query: 181 NTPQARFRKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKS+S+ERTF+ TE++ Y E+ L+ D++KEGL+ RT+TLKLK
Sbjct: 388 QLERDGERKSMSTERTFNEINTEEQ---YSLCKELCADLAQDLKKEGLKARTVTLKLKNV 444
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVR 291
+FEV+TRA T+ +S+ E+I A LL +E+ P+ LRL+G+RV+ F NE++ +
Sbjct: 445 NFEVKTRATTVLSAVSTEEEIFAIAKDLLGSEIVSVAPQPLRLRLMGVRVSGFLNEEEKK 504
Query: 292 APSDPTQKTLTNFMTSGHASKKI 314
QK++ NF+ ++ K+
Sbjct: 505 Y----QQKSIVNFLGKQISASKL 523
>gi|156378469|ref|XP_001631165.1| predicted protein [Nematostella vectensis]
gi|156218200|gb|EDO39102.1| predicted protein [Nematostella vectensis]
Length = 483
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 125/352 (35%), Positives = 189/352 (53%), Gaps = 72/352 (20%)
Query: 1 MPGFIARKLCPELIFVPTDFTKY------------------------TYYSDLT------ 30
MPGFIA+KLCP LI VP F KY Y DLT
Sbjct: 135 MPGFIAKKLCPHLIIVPLHFDKYRAVSKIVRGIFREYDPRFVPMSLDEAYLDLTDYLIER 194
Query: 31 ----------RKVFCKYDPNFMAASLDEAYLDITEVCR---------------------E 59
+KV+ + P+ S E+ +E C E
Sbjct: 195 QRKTEKRLFYKKVYRQTSPSAGVPSESES----SEACGSNTAQESENVPSVAESVGEPIE 250
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G ++ +E+R + E LT SAG+A N LLAKVC+D NKPNGQF L DR +++F
Sbjct: 251 FGNDVKDVVQEIRFRIENETQLTASAGIACNVLLAKVCTDCNKPNGQFYLKPDREEIVSF 310
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LPIRKI GIG+V+E +L+ G+ TC ++ +K LL + S ++ F + V LGLG+
Sbjct: 311 VKTLPIRKISGIGRVSEQMLK-ALGVITCADLFEKRDLLVLLHSDISSRFLIEVALGLGA 369
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T R RKS+ +ERTFS + A L+ + ++ + ++ DM +EGLR +T+T+KLKT +
Sbjct: 370 TRLETDRGRKSLGTERTFSEISNPAQLFSECEQLCKAIAVDMNEEGLRPKTVTIKLKTIN 429
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 285
FE++TR+V+ ++ I+S ++++ A LL E+ P+ LRL+G+R++ F
Sbjct: 430 FELKTRSVSFRQGITSEKELIASAFDLLGKEIKACEPKPLKLRLMGVRLSNF 481
>gi|149059108|gb|EDM10115.1| polymerase (DNA directed) kappa, isoform CRA_a [Rattus norvegicus]
gi|149059109|gb|EDM10116.1| polymerase (DNA directed) kappa, isoform CRA_a [Rattus norvegicus]
Length = 851
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 10/255 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 295 DPTQKTLTNFMTSGH 309
Q+++ F+ +G+
Sbjct: 525 ---QRSIIGFLQAGN 536
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
>gi|391341271|ref|XP_003744954.1| PREDICTED: DNA polymerase kappa-like [Metaseiulus occidentalis]
Length = 601
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 194/343 (56%), Gaps = 25/343 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+PGFIA KLCP+L+ V D KY+ S +V +YDPN + LDEA LDITE+CR
Sbjct: 131 LPGFIALKLCPQLVLVRPDMGKYSEASAKVMQVLSRYDPNLVQFGLDEAALDITELCRNP 190
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +I E+R V + GLTCSAG+ PN+++AK+ +D+NKPNGQF L + +FI
Sbjct: 191 EKTPDQIVAEIRQDVRDTTGLTCSAGIGPNQMVAKMLADVNKPNGQFRLTTP-AEIESFI 249
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL--G 178
+L +RKI G+G+V E +L + +N C +++ + + L FS +TA FL+ G+ G
Sbjct: 250 ENLTVRKIFGVGQVQEKMLAALGCVN-CSDLIDQRAKLFLGFSDATAKSFLAAAKGICDG 308
Query: 179 STNTPQ--ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
N + +R R+S S+E TF +++ L ++E LS D+ L+G+ +T+K K
Sbjct: 309 LVNDSEISSRTRRSKSAETTFKDSDNVEFLTEVCHHLSERLSEDLAISDLQGKLITVKFK 368
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLRVTQFNEDKVRA 292
T+SF+V +R+V L+ S + I A+ +LK+ L LRL+G+R++ F E
Sbjct: 369 TSSFDVFSRSVALELPTRSLKTISTQATRVLKSMLARNPGTKLRLLGVRMSSFQE----- 423
Query: 293 PSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKE 335
+D Q TL+ S A + + +CLI+ E
Sbjct: 424 -ADGKQATLSQLFKSTAAPPR---------DEPKTECLIEKSE 456
>gi|189491622|ref|NP_612525.1| DNA polymerase kappa [Rattus norvegicus]
gi|187469039|gb|AAI66778.1| Polk protein [Rattus norvegicus]
Length = 851
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 10/255 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 295 DPTQKTLTNFMTSGH 309
Q+++ F+ +G+
Sbjct: 525 ---QRSIIGFLQAGN 536
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
>gi|167522010|ref|XP_001745343.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776301|gb|EDQ89921.1| predicted protein [Monosiga brevicollis MX1]
Length = 456
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 173/319 (54%), Gaps = 50/319 (15%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPG+IA +LCPELI V F Y S + V +YDPNF + SLDEAYLDIT+
Sbjct: 140 MPGYIALRLCPELILVKPRFHAYEAASRQLQAVMAQYDPNFRSVSLDEAYLDITDYMARL 199
Query: 60 ---------------------------------------RGISGIE-------IAEELRT 73
R ++ +E + ++RT
Sbjct: 200 TPGDVAQLPPLTTVADPPLVQEANSADSKPGMATDSAGARNLTTLEGRALAARVVHQMRT 259
Query: 74 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 133
++E LT SAG+A NR+LAK+ SD NKP+GQF LP DR A++ F++++P RKI GIGK
Sbjct: 260 RMHETTQLTVSAGIACNRMLAKIGSDQNKPDGQFCLPADRAAILAFLANMPTRKIPGIGK 319
Query: 134 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 193
VTE ILR+ I C+ +LQ+ +LL +F+ + DFF+ LG+ S NT + RKSI
Sbjct: 320 VTEQILRE-LDITNCQALLQQRALLKLLFTPISFDFFMRSALGIASNNTRKRSERKSIGH 378
Query: 194 ERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYI 253
E TF L K + + DM+++ L GR++ LKLKT F+V+ R+V L +
Sbjct: 379 ETTFRELNQVPDLEDKCLHLCHKTALDMERKALLGRSVCLKLKTVDFKVKQRSVLLPAH- 437
Query: 254 SSSEDILKHASV-LLKAEL 271
++ E ++K A++ LL EL
Sbjct: 438 TADEPVIKRAALGLLHREL 456
>gi|156345284|ref|XP_001621312.1| hypothetical protein NEMVEDRAFT_v1g231426 [Nematostella vectensis]
gi|156207107|gb|EDO29212.1| predicted protein [Nematostella vectensis]
Length = 501
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 196/373 (52%), Gaps = 73/373 (19%)
Query: 1 MPGFIARKLCPELIFVPTDFTKY------------------------TYYSDLT------ 30
MPGFIA+KLCP LI VP F KY Y DLT
Sbjct: 134 MPGFIAKKLCPHLIIVPLHFDKYRAVSKIVRGIFREYDPRFVPMSLDEAYLDLTDYLIER 193
Query: 31 ----------RKVFCKYDPNFMAASLDEAYLDITEVCR---------------------E 59
+KV+ + P+ S E+ +E C E
Sbjct: 194 QRKTEKRLFYKKVYRQTSPSAGVPSESES----SEACGSNTAQESENVPSVAESVGEPIE 249
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G ++ +E+R + E LT SAG+A N LLAKVC+D NKPNGQF L DR +++F
Sbjct: 250 FGNDVKDVVQEIRFRIENETQLTASAGIACNVLLAKVCTDCNKPNGQFYLKPDREEIVSF 309
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LPIRKI GIG+V+E +L+ G+ TC ++ +K LL + S ++ F + V LGLG+
Sbjct: 310 VKTLPIRKISGIGRVSEQMLK-ALGVITCADLFEKRDLLVLLHSDISSRFLIEVALGLGA 368
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T R RKS+ +ERTFS + A L+ + ++ + ++ DM +EGLR +T+T+KLKT +
Sbjct: 369 TRLETDRGRKSLGTERTFSEISNPAQLFSECEQLCKAIAVDMNEEGLRPKTVTIKLKTIN 428
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FE++TR+V+ ++ I+S ++++ A LL E+ P+ LRL+G + + + +
Sbjct: 429 FELKTRSVSFRQGITSEKELIASAFDLLGKEIKACEPKPLKLRLMGYKAGK-RRSQGKVG 487
Query: 294 SDPTQKTLTNFMT 306
S P ++T+ F +
Sbjct: 488 SQPKKRTMETFWS 500
>gi|45383754|ref|NP_989514.1| DNA polymerase kappa [Gallus gallus]
gi|26983954|gb|AAM80560.1| DNA polymerase kappa [Gallus gallus]
Length = 867
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 280 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 339
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 398
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S+ERTFS Y E+ L+ D+QKEGL+G+T+TLKLK +F
Sbjct: 399 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 458
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ +S+ ++I A +LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 459 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEKKYQ 518
Query: 295 DPTQKTLTNFMTSG 308
QK++ +F+ SG
Sbjct: 519 ---QKSIKSFLKSG 529
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP L VP +F KY S +++ +YDP+FM LDEAYL++TE ER
Sbjct: 153 MPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYLNVTEHLEER 212
>gi|326434682|gb|EGD80252.1| hypothetical protein PTSG_13123 [Salpingoeca sp. ATCC 50818]
Length = 860
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 167/310 (53%), Gaps = 20/310 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I + LCP LI + F Y S + + + YDP+F++ LDEA LDIT+ + R
Sbjct: 228 MPGYIGKALCPHLILIKPRFPVYKSVSAIFKSILRDYDPDFLSGGLDEASLDITDCVQRR 287
Query: 61 G---------ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 111
+ + EE+R + LT SAG+A R LAK CSD KPNGQ+ LP
Sbjct: 288 MDRDLSLTREATACALVEEMRARILAATNLTASAGIACTRRLAKTCSDWKKPNGQYFLPF 347
Query: 112 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 171
+V F+ LPIRK+ GIG VTE +LR G+ T ML++ + L +F T FF+
Sbjct: 348 TLDSVTAFLRPLPIRKLSGIGNVTEELLRG-LGVETVAGMLEQRAKLQLLFRPRTFQFFM 406
Query: 172 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
V G+ T + R RKSIS+ERTF T + L L I L+A+MQ++ L GR L
Sbjct: 407 HVAHGVSVPRT-RTRERKSISTERTFDATSSRVQLLSILNRICSKLTAEMQEKQLAGRCL 465
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRV 282
TLK+K A+F V R+VTL I+ S + ++ EL ++RL+G+RV
Sbjct: 466 TLKVKLATFHVLQRSVTLPTPIADSSVLFAQMRAIMARELEAASPSPSRMPAVRLLGVRV 525
Query: 283 TQFNEDKVRA 292
+ + RA
Sbjct: 526 SSLTFGRNRA 535
>gi|145518886|ref|XP_001445315.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412759|emb|CAK77918.1| unnamed protein product [Paramecium tetraurelia]
Length = 591
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/377 (33%), Positives = 197/377 (52%), Gaps = 21/377 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGF+A+KLCP++IFVP F KY S++ + KYD N + LDEA LD+TE
Sbjct: 136 MPGFVAKKLCPDIIFVPCHFEKYKSVSNIFMTILKKYDDNLESMGLDEANLDLTEYINNS 195
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ + E +R ++ LT S GV PN+++AK+ S+INKPNG V+ AV+ F+
Sbjct: 196 QVDPATLCENIRKDIFIATQLTASCGVGPNKMIAKLASEINKPNGLHVVEQSPTAVLGFL 255
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RKI GIG +TE IL + NTC+++ + L +F+ T ++ G+
Sbjct: 256 EKLPVRKIPGIGNITEQILSGL-NFNTCKDVRDRADELYIIFTPKTFEYIFYSCWGVARN 314
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + SIS +RTFS + K+ IAE L+ DMQ+E G LTL +KT F
Sbjct: 315 CHVEFEDQLSISCQRTFSSISTQKEFEDKVDYIAEKLAEDMQQEEKVGNHLTLIIKTCKF 374
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF-NEDKVRAPSDPTQ 298
E+R +++ L +Y + ++ I + LLK +L +RL+GL++ NE +++ S T
Sbjct: 375 EIRNKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLKMGSLANEKQMQKQSIST- 433
Query: 299 KTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNS 358
KK NSL + I + + K +S D N + P + S
Sbjct: 434 -----------YFKKQFDKSNSLENQIASN--LGSKSHQISEDGDSINKVQLQQP--EQS 478
Query: 359 LPDL--NDENCSFSNKI 373
P++ DE + SN++
Sbjct: 479 KPEIISEDEASNISNQL 495
>gi|343428792|emb|CBQ72337.1| related to DNA polymerase kappa [Sporisorium reilianum SRZ2]
Length = 654
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 167/291 (57%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+ LCP LI V D Y S VF +YD N ASLDEAYLDIT+ +
Sbjct: 197 MAVFVAKALCPHLIVVKNDMQSYVQASQKVMAVFEQYDENLAKASLDEAYLDITDYVEQH 256
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S ++ ++LR V E LT S G+APN +LAK+ SD NKP+GQF + DR A++ F+
Sbjct: 257 GGSIDQVVQQLRDQVRSETQLTVSVGIAPNTMLAKISSDRNKPDGQFRVQPDRKAIVDFM 316
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RKI GIG+V E IL + G++TC E+ K L F ++ + LG+G+T
Sbjct: 317 RDLPCRKIPGIGRVNERIL-ESLGVSTCGEIWNKRVELWLAFD-GKIEWLVKAHLGIGNT 374
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P R RKS+ E TFS T D L L E A+ + D+++ +G+T+TL K
Sbjct: 375 VVEPSKREERKSVGREHTFSPTSDTQALLDLLKESAQRVEQDLERLDFKGKTITLVAKRD 434
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQF 285
+++ +RA T + + +E++ + S LL E+ +SLRLIG+RVTQ
Sbjct: 435 NYQRFSRARTSTRLVHRAEELYEITSSLLLHEIEREGQLSLRLIGVRVTQL 485
>gi|145517234|ref|XP_001444500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411922|emb|CAK77103.1| unnamed protein product [Paramecium tetraurelia]
Length = 591
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 169/299 (56%), Gaps = 3/299 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGF+A+KLCPE+IF+P F KY S++ + KYD N + LDEA LD+TE
Sbjct: 136 MPGFVAKKLCPEIIFIPCHFEKYKSVSNIFMTILKKYDDNLESMGLDEANLDLTEYINNS 195
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E +R + LT S GV PN+++AK+ S+INKPNG V+ AV+ F+
Sbjct: 196 QEDPAILCENIRKDILLATQLTASCGVGPNKMIAKLASEINKPNGLHVVEQSATAVLNFL 255
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRKI GIG +TE IL + NTC+++ + L +F+ T ++ G+
Sbjct: 256 EKLPIRKIPGIGNITEQILSGL-NFNTCKDVRDRADELYVIFTPKTFEYIFYSCWGVARN 314
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + SIS +RTFS + K+ IAE L+ +MQ E G LTL +KT+ F
Sbjct: 315 YHVEFEDQHSISCQRTFSSISTQREFEDKVDYIAEKLAEEMQSEEKVGNHLTLIIKTSKF 374
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF-NEDKVRAPSDPT 297
E+R++++ L +Y + ++ I + LLK +L +RL+GL+++ NE +++ S T
Sbjct: 375 EIRSKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLKMSSLANEKQIQKQSIST 433
>gi|58261176|ref|XP_567998.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230080|gb|AAW46481.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 658
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 159/289 (55%), Gaps = 10/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP +I F YT S ++V +YD N M ASLDE YL+IT
Sbjct: 269 MAGFIAKKLCPHIILTDLHFDLYTKASKAVKEVLVQYDENLMMASLDEGYLNITPYMSTH 328
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ E+ E+R V E+ LT SAG+A NR+LAK+CSD NKPNG F L DR ++ F+
Sbjct: 329 NMTASEVVTEIRAQVEEKTSLTISAGIAANRMLAKICSDKNKPNGHFELAFDRATIVRFM 388
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+R I G G+VTE L + GI TC ++ +K L + LG+
Sbjct: 389 RDLPVRNIPGFGRVTERCL-EGLGIQTCGDIYEKRVDLLLMDHWFGFRGLCRAYLGIADN 447
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R R+S+ ERTF D + L +I E L D+ + G+T+T+K K
Sbjct: 448 TVAPGRREERRSVGVERTFRDKTDDEDIMATLIDIVEELGKDLDRLQYAGKTVTVKYK-- 505
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
TRA ++ KYISS+ DIL A LLK ELP+ +RL+G+R++ +
Sbjct: 506 -----TRAKSIPKYISSATDILPIAQELLKKELPLRIRLLGVRLSTLKD 549
>gi|321257026|ref|XP_003193442.1| hypothetical protein CGB_D2570C [Cryptococcus gattii WM276]
gi|317459912|gb|ADV21655.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 559
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 159/289 (55%), Gaps = 10/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M FIA+KLCP +I F YT S ++V +YD N M ASLDE YL+IT
Sbjct: 170 MASFIAKKLCPHIILTDLHFDLYTEASKAVKEVLVQYDENLMMASLDEGYLNITPYMSAH 229
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ E+ ++R V E+ LT SAG+A NR+LAK+CSD NKPNGQF L DR ++ F+
Sbjct: 230 NMTASEVVTQIRAQVEEKTSLTISAGIAANRMLAKICSDKNKPNGQFELAFDRATIVRFM 289
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RKI G G+VTE L + I TC ++ +K L + LG+
Sbjct: 290 RDLPVRKIPGFGRVTERCL-EGLEIETCGDIYEKRMDLLLMDHWFGFRGLCRAYLGIADN 348
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ ERTF D + L EI E L D+ + G+T+T+K K
Sbjct: 349 TVAPGRREERKSVGVERTFRDKTDDEEIMATLIEIVEELGKDLDRLQFAGKTITIKYK-- 406
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
TRA ++ KYISS+ DIL A LLK ELP+ +RL+G+R++ +
Sbjct: 407 -----TRAKSISKYISSTRDILPVAQELLKKELPLRIRLLGVRLSTLKD 450
>gi|56160420|gb|AAV80824.1| polymerase kappa isoform 8 [Mus musculus]
Length = 547
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 146/224 (65%), Gaps = 7/224 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLI 278
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLM 508
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEA L+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAXLNITQHLQER 210
>gi|47226716|emb|CAG07875.1| unnamed protein product [Tetraodon nigroviridis]
Length = 520
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 165/259 (63%), Gaps = 19/259 (7%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP R AVM F+
Sbjct: 269 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPPTREAVMEFV 328
Query: 121 SSLPIRK-IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
LP+RK + G+GKV+E +L GI++C + QK +LL +FS ++ FL V LGLGS
Sbjct: 329 CDLPVRKVVSGVGKVSEKLL-SALGISSCSHLGQKMALLSLLFSETSWHHFLQVSLGLGS 387
Query: 180 TNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
P+ RKS+S+ERTF +V E +L + E+ E L+ D++KEGL+G+T+TLKL
Sbjct: 388 AFIPRHEERKSMSTERTFKEMSAVEEQLSLCH----ELCEDLANDLKKEGLKGKTVTLKL 443
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE------LPVSLRLIGLRVTQFNEDK 289
K +FEV+TRA+TL ++++++I A LLK E P+ LRL+G+RV+ F
Sbjct: 444 KNVNFEVKTRALTLPYPVATADEIFTVAKDLLKTERDNESPQPLRLRLMGVRVSAFVSSD 503
Query: 290 VRAPSDPTQKTLTNFMTSG 308
+ P Q+++ F+ SG
Sbjct: 504 HK---KPLQRSIVGFLNSG 519
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP L+ VPT+F KY S+ R++F YDP FM SLDEAYLD TE +R
Sbjct: 144 MPGFIAKKLCPHLVIVPTNFDKYRAVSNEIREIFTDYDPGFMPVSLDEAYLDFTEHVEKR 203
Query: 61 GISGIEIAEELRTSVYEEAGLT 82
E LRT Y + T
Sbjct: 204 Q----SWPESLRTRRYRASTTT 221
>gi|258577383|ref|XP_002542873.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903139|gb|EEP77540.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 601
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 171/291 (58%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCPELI +P ++ KYT ++ R + YD F +AS+DEAYL+ITE C
Sbjct: 159 MASFVAKKLCPELICLPQNYAKYTAKANEIRAILVNYDSRFESASIDEAYLNITEYCSTN 218
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E ++LR ++ E +T SAG+A N +AK+ S+ NKPNGQF +P++R A+M F+
Sbjct: 219 NMGPEEAVQKLRDTIAAETNITVSAGIAANAKIAKIASNWNKPNGQFYVPSERAAIMDFM 278
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+RK+ G+G+V E L D GI TC ++ ++L +F F + LGLG T
Sbjct: 279 AKIPVRKVNGVGRVFEREL-DALGIKTCRDIYPLRAMLAPLFGQKAFQFLMQCYLGLGRT 337
Query: 181 NTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
A R RKS+ +E TF E A L KL A L D++K +GRTL LK+K
Sbjct: 338 TISPAEERQRKSVGTESTFRDLEGLANLQDKLKSTAVELEKDLRKADCKGRTLVLKVKLH 397
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 285
+FE+ +R K + ++++ ++A LL E P + +RL+GLR T
Sbjct: 398 TFEIISRQAVTPKPVHLADELYRNALPLLTKIYKETPNLKIRLMGLRCTHL 448
>gi|55731632|emb|CAH92522.1| hypothetical protein [Pongo abelii]
Length = 898
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 168/285 (58%), Gaps = 39/285 (13%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAG---------------------------VAPNRLL 93
G S E+ +E+R + ++ LT SAG +APN +L
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGNNLIISFSLGDFNPVQDCRREPRRPQGIAPNTML 346
Query: 94 AKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 152
AKVCSD NKPNGQ+ +LPN R AVM FI LPIRK+ GIGKVTE +L+ GI TC E+
Sbjct: 347 AKVCSDKNKPNGQYQILPN-RQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELY 404
Query: 153 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 212
Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E
Sbjct: 405 QQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQE 464
Query: 213 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL- 271
+ L+ D+QK+ L+GRT+T+KLK +FEV+TRA T+ +S++E+I A LLK E+
Sbjct: 465 LCSELAQDLQKQRLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID 524
Query: 272 -----PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 311
P+ LRL+G+R++ F ++ R Q+++ F+ +G+ +
Sbjct: 525 ADFPHPLRLRLMGVRISSFPNEEDRKHQ---QRSIIGFLQAGNQA 566
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI +P +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIMPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|327532749|ref|NP_001126479.1| DNA polymerase kappa [Pongo abelii]
Length = 898
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 168/285 (58%), Gaps = 39/285 (13%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAG---------------------------VAPNRLL 93
G S E+ +E+R + ++ LT SAG +APN +L
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGNNLIISFSLGDFNPVQDCRREPRRPQGIAPNTML 346
Query: 94 AKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 152
AKVCSD NKPNGQ+ +LPN R AVM FI LPIRK+ GIGKVTE +L+ GI TC E+
Sbjct: 347 AKVCSDKNKPNGQYQILPN-RQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELY 404
Query: 153 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 212
Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E
Sbjct: 405 QQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQE 464
Query: 213 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL- 271
+ L+ D+QK+ L+GRT+T+KLK +FEV+TRA T+ +S++E+I A LLK E+
Sbjct: 465 LCSELAQDLQKQRLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID 524
Query: 272 -----PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 311
P+ LRL+G+R++ F ++ R Q+++ F+ +G+ +
Sbjct: 525 ADFPHPLRLRLMGVRISSFPNEEDRKHQ---QRSIIGFLQAGNQA 566
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI P +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIKPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|56160406|gb|AAV80817.1| polymerase kappa isoform 1 [Mus musculus]
Length = 533
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 142/214 (66%), Gaps = 1/214 (0%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 274
EV+TRA T+ IS++E+I A LL+ E+ VS
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVS 498
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
>gi|443893809|dbj|GAC71265.1| predicted DNA damage inducible protein [Pseudozyma antarctica T-34]
Length = 658
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 164/291 (56%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+ LCP LI V D Y S VF +YD N ASLDEAYLDIT+ +
Sbjct: 206 MAVFVAKALCPHLIVVKNDMQSYVAASHKVMAVFERYDENLAQASLDEAYLDITDYLEQH 265
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S E+ ++LR V E LT S G+APN +LAK+ SD NKP+GQF + DR ++ F+
Sbjct: 266 SGSIDEVVQQLRDEVRNETQLTVSVGIAPNTMLAKISSDRNKPDGQFRVHPDRKTIVDFM 325
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RKI GIG+V E IL + G+NTC ++ L D+ + LG+G+T
Sbjct: 326 RDLPCRKIPGIGRVNERIL-ESLGVNTCGDIWHNRVQLWLALD-GKIDWLIKAHLGIGNT 383
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P R RKS+ E TFS T D L L E A+ + D+++ +G+T+TL K
Sbjct: 384 VVEPSKREQRKSVGREHTFSPTSDTQSLLDLLKESAQRVQNDLERLDFKGKTVTLVAKRD 443
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQF 285
+++ +RA T + + ++E++ + S LL E+ P+SLRLIG+RVT
Sbjct: 444 NYQRFSRARTSTRLVHTAEELYEITSSLLLQEIERQGPLSLRLIGVRVTHL 494
>gi|169785539|ref|XP_001827230.1| DNA-directed polymerase kappa [Aspergillus oryzae RIB40]
gi|83775978|dbj|BAE66097.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391866150|gb|EIT75422.1| putative DNA damage inducible protein [Aspergillus oryzae 3.042]
Length = 604
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A KLCP+LI +P + KY+ + R +F +YDP F +AS+DEAYL+IT C E
Sbjct: 163 MASFVAMKLCPQLICLPINHQKYSAKAQEIRAIFAQYDPLFESASIDEAYLNITAYCTEN 222
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PNDR A++ F+
Sbjct: 223 QIDPEDAVNRMRAEVLEQTKISVSAGIAANAKIAKIASNRNKPNGQFRVPNDRDAILEFM 282
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+RK+ G+G+V E L D GI TC ++ + +LL +F F LGLG T
Sbjct: 283 KDLPVRKVNGVGRVFEREL-DAVGIKTCGDIYSQRALLAKLFGEKAFHFLAQCYLGLGRT 341
Query: 181 N-TPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P + RKS+ +E TF+ K L KL IA+ L D+ + +GRTL LK+K A
Sbjct: 342 KIQPVENYERKSVGTESTFNEMGGKEALREKLWAIAQELEKDLTRTEFKGRTLVLKVKLA 401
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
+FEV +R K + ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 402 TFEVLSRQCQPPKAVFLAKDLYTFSLPMLEKLEKEIPNMRLRLLGLRCTNL 452
>gi|353234314|emb|CCA66340.1| related to DNA polymerase kappa [Piriformospora indica DSM 11827]
Length = 664
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 172/291 (59%), Gaps = 6/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G IA+KL P+LIFV F++Y+ S + +YD +DEAYL+IT+ C
Sbjct: 170 MAGHIAKKLAPDLIFVTNHFSRYSEVSGQVMTILRRYDETMNPVGVDEAYLNITDYCEAN 229
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPN--RLLAKVCSDINKPNGQFVLPNDRMAVMT 118
I+ E E +R ++++E LT SAG+APN ++LAK+CS+ NKPNG F L D A+
Sbjct: 230 KITPEECTENIRKAIFQETKLTASAGIAPNKRKMLAKICSERNKPNGLFKLEFDAQAIRD 289
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ LPIR+I G+G+VTE +L V GI TCE++ + + L + H L + LGLG
Sbjct: 290 FMKGLPIRRIPGVGRVTERLLESV-GIKTCEDIYTQRATLVLMDKHFHMHDKLEIYLGLG 348
Query: 179 STNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
S P R RKS+ SERTF D A + KL ++A+ L DM++ G G T+TLKLK
Sbjct: 349 SNVVRPWPREARKSVGSERTFHAISDPARINEKLEQVAKELEEDMERLGYSGHTVTLKLK 408
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
+FE RA ++ + I ++L LL ELP+ LRL+GLRVT +
Sbjct: 409 LDTFEG-NRAKSVHRPIRKYNELLSVGQELLAHELPLKLRLLGLRVTNLKD 458
>gi|255955303|ref|XP_002568404.1| Pc21g13870 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590115|emb|CAP96284.1| Pc21g13870 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 611
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 167/287 (58%), Gaps = 7/287 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+KLCP+L+ +P ++ KYT + R + +YDP F +AS+DEAYL+IT C E
Sbjct: 162 MASFVAKKLCPQLVLLPQNYEKYTAKAKEIRAIMAEYDPLFESASIDEAYLNITAYCNEN 221
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E+ +R + E ++ SAG+A N +AK+ S+INKPNGQF +PNDR A+M F+
Sbjct: 222 HLEPDEVVRRMRAEILETTKVSVSAGIAANAKIAKIASNINKPNGQFQVPNDRDAIMEFM 281
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK+ GIG+V E L + G+ C ++ +LL +F F LGLG T
Sbjct: 282 RDLSVRKVNGIGRVFERELESI-GVKKCGDIFPHRALLTKLFGEKAFQFLAQCYLGLGRT 340
Query: 181 NTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKS+S+E TF DK L KL A+ L D+ + +GRTL LK+K
Sbjct: 341 KMEPVETHERKSVSTETTFHEIGDKEELRAKLWWAAQELEKDLARTQFKGRTLVLKVKLH 400
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLR 281
+FEV TR + +S ++D+ A + L+ ++P + LRL+GLR
Sbjct: 401 TFEVLTRQTAPPRAVSLAKDLYSFALPMLAKLERDIPDMKLRLLGLR 447
>gi|71022115|ref|XP_761288.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
gi|46097782|gb|EAK83015.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
Length = 682
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 161/291 (55%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+ LCP LI V D Y S +F +YD N ASLDEAYLDITE +
Sbjct: 197 MAVFVAKALCPHLIVVKNDMQSYVQASQKVMAIFEQYDENLAKASLDEAYLDITEYVEQN 256
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S ++ ++LR V LT S G+APN +LAK+ SD NKP+GQF + DR ++ F+
Sbjct: 257 ASSIDQVVQQLRNQVRSHTQLTVSVGIAPNTMLAKISSDRNKPDGQFRIQPDRKVIVDFM 316
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP RKI GIG+V E IL + G+ TC E+ K L F ++ + LG+G+T
Sbjct: 317 RNLPCRKIPGIGRVNERIL-ESLGVTTCGEIWDKRVELWLSFD-GKIEWLIKAHLGIGNT 374
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P R RKS+ E TFS T D L L E A+ + D+ + + +T+TL K
Sbjct: 375 VVEPSKREERKSVGREHTFSPTSDTKALLDLLKESAQRVEQDLARLDFKAKTITLVAKRD 434
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQF 285
+F+ +RA T + + +E++ S LL E+ +SLRLIG+RVTQ
Sbjct: 435 NFQRFSRARTSTRLVHRAEELYDITSSLLMQEIEREGAISLRLIGVRVTQL 485
>gi|56160418|gb|AAV80823.1| polymerase kappa isoform 7 [Mus musculus]
Length = 495
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 139/210 (66%), Gaps = 1/210 (0%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAE 270
EV+TRA T+ IS++E+I A LL+ +
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTD 494
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
>gi|170092351|ref|XP_001877397.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647256|gb|EDR11500.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 420
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 151/261 (57%), Gaps = 12/261 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP+LI V +F++Y+ S +F +YDPN A DEAYL+ITE
Sbjct: 155 MPGFIAKKLCPDLILVSNNFSRYSEMSAKVMDIFRRYDPNMCPAGSDEAYLNITEYSVRH 214
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G++ +E+R +V+ LT SAG+APN+ NKPNGQF +P D ++ F+
Sbjct: 215 GLTAEVCVQEMRKAVHAITQLTVSAGIAPNK---------NKPNGQFQIPFDSASIKAFM 265
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L IRK+ GIG+V E +L + GI TC ++ ++ + F L LG+ S
Sbjct: 266 HHLSIRKVPGIGRVNERLLESI-GIKTCGDIYMHRVVISVMDKRFGLKFLLQTHLGIASN 324
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P R RKSI +ERTFS DK + +KL EIA L DM + G GRT+TLK K
Sbjct: 325 IVEPHLREERKSIGAERTFSSLGDKEKILQKLQEIAAELEKDMSRNGWTGRTVTLKYKLD 384
Query: 239 SFEVRTRAVTLQKYISSSEDI 259
+++V TRA T +Y+ + E++
Sbjct: 385 TYQVFTRAKTFDRYVFTKEEL 405
>gi|213408879|ref|XP_002175210.1| DNA polymerase kappa [Schizosaccharomyces japonicus yFS275]
gi|212003257|gb|EEB08917.1| DNA polymerase kappa [Schizosaccharomyces japonicus yFS275]
Length = 532
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 185/343 (53%), Gaps = 16/343 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIAR+LCP LI +P KY S K+ +YDPN AS+DEAYLD+T+ +
Sbjct: 165 MPEFIARQLCPNLIVLPLRMMKYQEKSAEIAKILQEYDPNMCKASVDEAYLDLTDYLTKH 224
Query: 61 GISGIEIAE--ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 118
A LR +V E+ G+T S G+ N +LAK+ S++ KPN QF + R A++
Sbjct: 225 NEEETVEAVVEHLRQTVAEKTGITVSCGIGANLMLAKIASNMRKPNDQFSIGRTREAILE 284
Query: 119 FISSLPIRKI--------GGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 170
F+ +LP RK+ GIG+V E L + ++ C ++L++ L VF +
Sbjct: 285 FMDTLPCRKVYLELNHNVNGIGRVLEQELSSL-NVHNCGDILRRKGYLYYVFQEKSFQNL 343
Query: 171 LSVGLGLGS--TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLR 227
LS LG+ + A RKSI +E TFS+ + + +KL ++ +S M++ L
Sbjct: 344 LSYALGISNNVVKPTDASNRKSIGNEMTFSIPMGSEKTISQKLKQLCFSVSETMKQRNLV 403
Query: 228 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
G ++ LKLKT SFEVRTR L Y + S+ I K+ LL ELPV +RL+G+R+T+ +
Sbjct: 404 GNSVVLKLKTTSFEVRTRQTNLNTYTNESDIIYKYVLQLLSYELPVQVRLLGVRMTKLQD 463
Query: 288 DKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCL 330
+ S + T N + S+ ++ D S+ I ++CL
Sbjct: 464 ASIYEESKLS-FTKENGVQCPICSRYLINDACSVDKHI-EECL 504
>gi|358060315|dbj|GAA94069.1| hypothetical protein E5Q_00716 [Mixia osmundae IAM 14324]
Length = 664
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 173/328 (52%), Gaps = 25/328 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G+IA+KLCP LIFV DFTKY+ S + KYDP+ ASLDEAYL+IT R
Sbjct: 186 LAGYIAKKLCPHLIFVKPDFTKYSQASARVMAILRKYDPHLAPASLDEAYLNITVFMRSS 245
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+S + ++RT + E GLT SAG+APN LLAK+ +D+NKP+GQ + R AV+ F
Sbjct: 246 GLSADDAVMQMRTEIKETTGLTVSAGIAPNTLLAKMAADVNKPDGQCRVMPTRDAVVEFT 305
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S+ P+RKI G+G+VTE L + ++ K +L + + + DF L LGLGS+
Sbjct: 306 SAQPVRKIFGVGRVTEAWLV-ALDVRRISDIWAKRGMLHLIRTSISLDFLLKAYLGLGSS 364
Query: 181 --NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ RKS+ E TF D + L +AE L D Q GRTLTLK K +
Sbjct: 365 LVSASTRESRKSVGREDTFGKLADYSGFLEVLRALAETLGNDCQSLQFAGRTLTLKFKLS 424
Query: 239 SFEVRTRAVTLQKY--ISSSEDILKHASVLL------------KAELPVS--------LR 276
++E TRA T+ ++ +E K LL + PV LR
Sbjct: 425 TYEPFTRARTIGQHHLYRDTEQFYKVGKELLDEAITERRKLYDDGKTPVGCGGTREIELR 484
Query: 277 LIGLRVTQFNEDKVRAPSDPTQKTLTNF 304
L+GLR+T + A + +T+ ++
Sbjct: 485 LLGLRITNLVDQSEAAIAKRRARTIDHW 512
>gi|134115815|ref|XP_773621.1| hypothetical protein CNBI2350 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256247|gb|EAL18974.1| hypothetical protein CNBI2350 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 598
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 157/289 (54%), Gaps = 10/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP +I F YT S ++V +YD N M ASLDE YL+IT
Sbjct: 143 MAGFIAKKLCPHIILTDLHFDLYTKASKAVKEVLVQYDENLMMASLDEGYLNITPYMSTH 202
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ E+ E+R V E+ LT SAG+A NR+LA KPNG F L DR ++ F+
Sbjct: 203 NMTASEVVTEIRAQVEEKTSLTISAGIAANRMLA-------KPNGHFELAFDRATIVRFM 255
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+R I G G+VTE L + GI TC ++ +K L + LG+
Sbjct: 256 RDLPVRNIPGFGRVTERCL-EGLGIQTCGDIYEKRVDLLLMDHWFGFRGLCRAYLGIADN 314
Query: 181 NTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R R+S+ ERTF D + L +I E L D+ + G+T+T+K K
Sbjct: 315 TVAPGRREERRSVGVERTFRDKTDDEDIMATLIDIVEELGKDLDRLQYAGKTVTVKYKLH 374
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
++E +TRA ++ KYISS+ DIL A LLK ELP+ +RL+G+R++ +
Sbjct: 375 TYENKTRAKSIPKYISSATDILPIAQELLKKELPLRIRLLGVRLSTLKD 423
>gi|388856805|emb|CCF49592.1| related to DNA polymerase kappa [Ustilago hordei]
Length = 680
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 161/291 (55%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A+ LCP LI V +D Y S VF +YD N ASLDEAYLDITE +
Sbjct: 202 MATFVAKALCPHLIVVKSDMQSYLQASHKVMAVFEQYDENLAKASLDEAYLDITEYVEQH 261
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++ + LR V E LT S G+APN +LAK+ SD NKP+GQF + DR A++ +
Sbjct: 262 RGTIDQVVQHLRDQVRNETQLTVSVGIAPNTMLAKISSDRNKPDGQFRVQPDRKAILDLM 321
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP RKI GIG+V E IL + G+ TC E+ K L + + LG+G+T
Sbjct: 322 RHLPCRKIPGIGRVNERIL-ESLGVTTCGEIWNKRVQLWLALD-GKIQWLIKAHLGIGNT 379
Query: 181 NT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
P R RKS+ E TFS T D L L E ++ + D+++ +G+T+TL K
Sbjct: 380 LVEPSKREERKSVGREHTFSPTSDTQALLHFLKESSDRVQQDLERLEFKGKTVTLIAKRE 439
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQF 285
+F+ +RA T + ++ ++++ LL E+ P+SLRLIG+RVT
Sbjct: 440 NFQRFSRARTSTRPVNRAQELYDITRSLLLQEIEREGPLSLRLIGVRVTHL 490
>gi|345304664|ref|XP_003428244.1| PREDICTED: DNA polymerase kappa isoform 2 [Ornithorhynchus
anatinus]
Length = 882
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 160/254 (62%), Gaps = 13/254 (5%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S ++ E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 299 GTSAEDVVREIRFRIEQKTTLTASAGIAPNMMLAKVCSDKNKPNGQYRILPTRQAVMDFI 358
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS S+ FL + LGLGST
Sbjct: 359 KDLPIRKVSGIGKVTEKMLK-ALGITTCTDLYQQRALLSLLFSESSWHNFLHISLGLGST 417
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKE L+G+T+TLKLK +F
Sbjct: 418 HLEKDGERKSMSIERTFSEISKAEEQYSLCQELCNDLAQDLQKELLKGKTVTLKLKNVNF 477
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 293
EVRTRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 478 EVRTRASTVSSGVSTGEEIYAMAKELLRTEIEADFPHPLRLRLMGVRISGFLLEDKRHQ- 536
Query: 294 SDPTQKTLTNFMTS 307
Q+++ +F+ S
Sbjct: 537 ----QRSIISFLQS 546
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP L VPT+F KY S R++ +YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPHLTIVPTNFDKYREVSKEVREILTEYDPNFMAMSLDEAYLNITKHLEER 211
>gi|149408451|ref|XP_001512578.1| PREDICTED: DNA polymerase kappa isoform 1 [Ornithorhynchus
anatinus]
Length = 873
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 160/254 (62%), Gaps = 13/254 (5%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S ++ E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 290 GTSAEDVVREIRFRIEQKTTLTASAGIAPNMMLAKVCSDKNKPNGQYRILPTRQAVMDFI 349
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS S+ FL + LGLGST
Sbjct: 350 KDLPIRKVSGIGKVTEKMLK-ALGITTCTDLYQQRALLSLLFSESSWHNFLHISLGLGST 408
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKE L+G+T+TLKLK +F
Sbjct: 409 HLEKDGERKSMSIERTFSEISKAEEQYSLCQELCNDLAQDLQKELLKGKTVTLKLKNVNF 468
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 293
EVRTRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 469 EVRTRASTVSSGVSTGEEIYAMAKELLRTEIEADFPHPLRLRLMGVRISGFLLEDKRHQ- 527
Query: 294 SDPTQKTLTNFMTS 307
Q+++ +F+ S
Sbjct: 528 ----QRSIISFLQS 537
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP L VPT+F KY S R++ +YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPHLTIVPTNFDKYREVSKEVREILTEYDPNFMAMSLDEAYLNITKHLEER 211
>gi|63054412|ref|NP_587767.2| DinB translesion DNA repair polymerase, pol kappa
[Schizosaccharomyces pombe 972h-]
gi|74626930|sp|O74944.3|POLK_SCHPO RecName: Full=DNA polymerase kappa; AltName: Full=Meiotically
up-regulated gene 40 protein
gi|51950409|emb|CAA19259.2| DinB translesion DNA repair polymerase, pol kappa
[Schizosaccharomyces pombe]
Length = 547
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 173/293 (59%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIARK+CP+L+ +P + ++Y S + V +YD N AS+DE Y+++T R +
Sbjct: 180 MPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLTSHLRLQ 239
Query: 61 GIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 115
++ +E + E++R V+EE G+T S G+A N+LLAK+ S+ KPN QF +P D +
Sbjct: 240 ELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIG 299
Query: 116 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 175
+ F++ LP+R++ GIG+V E L + I TC ++ + +L +F + L
Sbjct: 300 ISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVILSYIFLPKSFQNLLRCSY 358
Query: 176 GLGSTNTPQ--ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G G+T + RK+I SE TFS +++ KL + + +S ++QK GL ++
Sbjct: 359 GFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQKRGLVTNSIA 418
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF 285
+K KT+ F+V T+ ++ ++I S D+LK A LL+ P+++RL+G+R T+
Sbjct: 419 IKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIRLLGVRATKL 471
>gi|403343212|gb|EJY70929.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 839
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 177/326 (54%), Gaps = 14/326 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FI +LCPE+ F+ +++KY + SD + + +YD + + LDEA +D+TE +
Sbjct: 275 MPKFIGARLCPEITFIEANYSKYKHESDQFKDILAQYDSKYESQGLDEASIDVTEFLKSN 334
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ +E + ++R+ +YE LT S G+A N+LLAK+CS + KPNG L D+ +
Sbjct: 335 NMDNMEGKIFLGSKIRSQIYESTELTASCGIACNKLLAKICSGLKKPNGMTYLDFDQDEI 394
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+++LPI K+ GIGKV + +L + G+ C++M++K + + ++ S FF+ LG
Sbjct: 395 TNFMNNLPINKLMGIGKVHQRVLTGL-GVKMCQDMIEKATEIYVNYNESQFQFFMRSALG 453
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ N + +KSI +T +K ++ +A L +++ L +TLTL+LK
Sbjct: 454 I-DRNYHEDTVQKSIGVSQTIKPIHEKKEHDDRVRAMAIELYERLKESELMAKTLTLELK 512
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKV---- 290
T F ++ R+ YI DI++ + LL PV +RLIG+R+ Q +
Sbjct: 513 TVRFNIKQRSTNFHTYIWEKSDIVRASEELLNVMWPVGEPVRLIGIRLMQLRTRIIPKTK 572
Query: 291 --RAPSDPTQKTLTNFMTSGHASKKI 314
+ D + +LT+ TS ++ ++
Sbjct: 573 SGKGRQDISDPSLTHLRTSSNSDERF 598
>gi|308479872|ref|XP_003102144.1| CRE-POLK-1 protein [Caenorhabditis remanei]
gi|308262299|gb|EFP06252.1| CRE-POLK-1 protein [Caenorhabditis remanei]
Length = 604
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 170/284 (59%), Gaps = 19/284 (6%)
Query: 59 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 118
E G+ EI E+R V + GLTCSAG+A N +LAK+CSD NKPNGQFVL NDR ++
Sbjct: 246 EFGVGREEIVREIRFRVEQLTGLTCSAGIAANFMLAKICSDFNKPNGQFVLENDREKILK 305
Query: 119 FISSLPIRK-----IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 173
F+ LPIRK +GGIG+V+E L+ + I T +ML K +L FS + FL
Sbjct: 306 FLEKLPIRKVEEMTVGGIGRVSEAHLQSM-EIRTVGDMLLKKALFPLCFSPLAQESFLRT 364
Query: 174 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLT 232
LGL + RKSIS ERTFS T D +L + EI ML D++K G+ G+T+T
Sbjct: 365 ALGLPGRPSSSDPRRKSISVERTFSPTSDFKILIAEHTEICRMLEEDIRKSGVTGGKTIT 424
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKV 290
LKLK +SF+V TR++T + ++S +DI K++ LL+ E +RL+G+R++Q F E+K
Sbjct: 425 LKLKLSSFDVLTRSLTPSEVVTSLDDIQKYSMELLERERGKEIRLLGVRLSQLVFEEEK- 483
Query: 291 RAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDK 334
KT+ +F + K+ + ++ + SD ND ++D +
Sbjct: 484 ------KSKTIADFW---NEKKQQMASEDVMSSDDNDIIMMDTR 518
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE 55
MPGFI++KLCP L VP +++KY+ S ++F +YD + SLDEAY+D+T+
Sbjct: 134 MPGFISKKLCPNLTLVPGNYSKYSKVSRQFSEIFMEYDGDVGMMSLDEAYIDLTD 188
>gi|440799683|gb|ELR20727.1| DNA polymerase kappa, putative [Acanthamoeba castellanii str. Neff]
Length = 463
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 151/255 (59%), Gaps = 26/255 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGFIA++LCPELI VP F KY S LT++VF +DP+F A SLDEA L ++ + +
Sbjct: 217 MPGFIAKQLCPELIIVPVHFDKYREASKLTQEVFAMFDPHFRAYSLDEASLHLSPYLAKH 276
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
S ++AE L AK+C D+NKP+GQF L DR A++ F
Sbjct: 277 PDESAEQVAERL----------------------AKICCDVNKPDGQFRLQADREAIIAF 314
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+RKI G+GKVTE +L+ + GI C E+ +K ++L +F S+A+FFL LG+ S
Sbjct: 315 LKDLPVRKISGVGKVTEQMLKGL-GITKCCEIQEKRAILFRLFKPSSAEFFLRASLGIWS 373
Query: 180 TNTPQ--ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ + + RKS+S RTF + +A L + E+AE L+ M K+ L G+ L + LKT
Sbjct: 374 PTSGEDSSPARKSVSKMRTFRPSGSQAFLMSQAREVAESLAKSMAKKSLAGKNLAIYLKT 433
Query: 238 ASFEVRTRAVTLQKY 252
F++ TR+ L ++
Sbjct: 434 DEFKMFTRSTMLNRF 448
>gi|193205700|ref|NP_001122692.1| Protein POLK-1, isoform a [Caenorhabditis elegans]
gi|374095490|sp|P34409.3|POLK_CAEEL RecName: Full=DNA polymerase kappa
gi|373253818|emb|CCD62142.1| Protein POLK-1, isoform a [Caenorhabditis elegans]
Length = 596
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 196/382 (51%), Gaps = 69/382 (18%)
Query: 1 MPGFIARKLCPELIFVPTD---FTKYT---------------------YYSDLT------ 30
MPGFI+ KLCP L VP + +TK + + DLT
Sbjct: 134 MPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFIDLTDYVASN 193
Query: 31 --RKVF----------C---KYDPN---FMAASLDEAYLDITEVCR-------ERGISGI 65
+K F C ++D N ++E+ E R E G
Sbjct: 194 TEKKTFKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIYYDHVEFGTGRE 253
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+M F+ LPI
Sbjct: 254 EAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIMEFLKDLPI 313
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
RK+GGIG+V E L+ I T +M K +L F+ + + FL LGL +
Sbjct: 314 RKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALGLPGRPSESD 372
Query: 186 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTLKLKTASFEVRT 244
RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TLKLK +SF+V T
Sbjct: 373 PRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLKLSSFDVLT 432
Query: 245 RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPSDPTQKTLT 302
R++T + S EDI K + LL+ E +RL+G+R++Q F ED+ + KT+T
Sbjct: 433 RSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR-----SKTIT 487
Query: 303 NFMTSGHASKKIVGDQNSLGSD 324
F ++K + QN GS+
Sbjct: 488 EFW-----NEKKLQIQNLQGSE 504
>gi|193205702|ref|NP_001122693.1| Protein POLK-1, isoform b [Caenorhabditis elegans]
gi|373253819|emb|CCD62143.1| Protein POLK-1, isoform b [Caenorhabditis elegans]
Length = 463
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 196/382 (51%), Gaps = 69/382 (18%)
Query: 1 MPGFIARKLCPELIFVPTD---FTKYT---------------------YYSDLT------ 30
MPGFI+ KLCP L VP + +TK + + DLT
Sbjct: 1 MPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFIDLTDYVASN 60
Query: 31 --RKVF----------C---KYDPN---FMAASLDEAYLDITEVCR-------ERGISGI 65
+K F C ++D N ++E+ E R E G
Sbjct: 61 TEKKTFKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIYYDHVEFGTGRE 120
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+M F+ LPI
Sbjct: 121 EAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIMEFLKDLPI 180
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
RK+GGIG+V E L+ I T +M K +L F+ + + FL LGL +
Sbjct: 181 RKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALGLPGRPSESD 239
Query: 186 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTLKLKTASFEVRT 244
RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TLKLK +SF+V T
Sbjct: 240 PRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLKLSSFDVLT 299
Query: 245 RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPSDPTQKTLT 302
R++T + S EDI K + LL+ E +RL+G+R++Q F ED+ + KT+T
Sbjct: 300 RSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR-----SKTIT 354
Query: 303 NFMTSGHASKKIVGDQNSLGSD 324
F ++K + QN GS+
Sbjct: 355 EFW-----NEKKLQIQNLQGSE 371
>gi|403377318|gb|EJY88651.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 701
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 192/351 (54%), Gaps = 20/351 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCPELIF+P + KY+ S + + + +YDPN+ + DEA LDIT+
Sbjct: 220 MPGFIAKKLCPELIFIPNNMKKYSKVSKVFKGILEQYDPNYESLGSDEANLDITDYLNTN 279
Query: 61 GIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NKPNGQ L D+ +
Sbjct: 280 NMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNKPNGQTYLKPDQQTI 339
Query: 117 MTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG 174
+ F+ L +RKI GIG++TE IL D+F T +++L K + T F
Sbjct: 340 LDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQIALKERTVYFLFRAA 396
Query: 175 LGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
LG+ S N + +KSIS TF K++++ L+ + K + G +
Sbjct: 397 LGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKISQLCTELAERVDKRKIAGLNI 455
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQF-NEDK 289
+L++KT F V +++TL+ YI + ED+ ++ LL+ P RLIG++++ N+ +
Sbjct: 456 SLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPARLIGVKLSHLKNQHE 515
Query: 290 VRAPSDPTQKTLTNFMTSGHASKKIVGDQN--SLGSDINDDCLIDDKETSV 338
V+ D + S A +KI +Q L +I DC+ D K T V
Sbjct: 516 VK--KDRNIGGFFDNKISKEAYQKI-NEQKLLKLHEEIKKDCIDDIKCTKV 563
>gi|403377409|gb|EJY88700.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 759
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 169/313 (53%), Gaps = 9/313 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVC--- 57
+P FI ++LCPE+ + +F KY SD + V KYD + A LDE +D+TE
Sbjct: 238 VPSFIGKRLCPEMKLIEPNFDKYRKASDEFKSVLYKYDNDLEAVGLDEVNMDVTEYLIQH 297
Query: 58 RERGISG-IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
R+ G I +A ++R + ++ +T S G+A N++LAK+CSD+NKPNGQ L N +
Sbjct: 298 RQDNQEGRINLATKIRKEIQQQTRMTASCGIACNKMLAKICSDMNKPNGQTYLHNSERDI 357
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
+ F+ LP+RK+ G+GKV E IL + I TC +++ K + F+ + DF + +G
Sbjct: 358 LEFMKELPVRKLVGVGKVNEQILLGM-NIKTCSDVIDKAVDIYINFTENAFDFLVKSAIG 416
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +A +KS++ +TF V + + KL E+ E L + E L GRTLTL+ K
Sbjct: 417 IARNTHEEAGIKKSLNISQTFQVLSEFIQIKAKLEELCEELEQRAKHEKLSGRTLTLEFK 476
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNEDKVRAPSD 295
F+ + R+ T +YI ED+ K A LL+ P+ R I +++ DK + +
Sbjct: 477 NDKFKNKQRSYTQNQYIWKKEDLFKIALSLLQDAWPLEPTRQISVKLLNLKNDKGQLSAT 536
Query: 296 PTQKTLTNFMTSG 308
T+ N T G
Sbjct: 537 ATE---VNHTTGG 546
>gi|297805920|ref|XP_002870844.1| hypothetical protein ARALYDRAFT_356151 [Arabidopsis lyrata subsp.
lyrata]
gi|297316680|gb|EFH47103.1| hypothetical protein ARALYDRAFT_356151 [Arabidopsis lyrata subsp.
lyrata]
Length = 592
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 154/260 (59%), Gaps = 43/260 (16%)
Query: 211 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE 270
+EIAEMLS DM+KEGL RTLTLKLKT SFE+R+RAV+LQ+Y SS+DILKH + LLKAE
Sbjct: 133 SEIAEMLSHDMKKEGLTARTLTLKLKTTSFEIRSRAVSLQRYTCSSDDILKHGAKLLKAE 192
Query: 271 LPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCL 330
LPVS+ LIGLR++QF ++R SDP+Q T+T F+ +S++ + D ND
Sbjct: 193 LPVSVLLIGLRMSQF-VGEIRN-SDPSQGTITKFIVQKDSSRQDLDD--------NDSFD 242
Query: 331 IDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEG 390
+D K + + +S + ++ C + + E Q+LEG
Sbjct: 243 LDAKRSQI------------------DSEKVIPNQEC-----------VEKEERPQVLEG 273
Query: 391 NSLVLRQEEGSCCDGVEEVDKDI--TPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSF 448
+ L+ + +E C + D + + + Q + W+D YKC LCG E+PPSF
Sbjct: 274 DVLLKKHKE--CKPDTNHLMNDSYKVQNTEAVSVFPQMEPLHWVDGYKCVLCGIELPPSF 331
Query: 449 IEERQEHSDFHLAERLQKEE 468
+EERQEHSDFHLA+RLQ EE
Sbjct: 332 VEERQEHSDFHLAQRLQNEE 351
>gi|345868102|ref|ZP_08820098.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
gi|344047584|gb|EGV43212.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
Length = 367
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 175/302 (57%), Gaps = 10/302 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A++LCP LIF PT F +Y S+ RK+F Y SLDEAYLD+TE ++
Sbjct: 62 MSGMLAQRLCPGLIFAPTRFERYREISEQVRKIFFDYTDLVEPLSLDEAYLDVTE-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+E+R ++ E GLT SAG++ N+ +AK+ SD NKPNGQ V P D V+ F
Sbjct: 121 NPSASLIAQEIRERIFNEVGLTASAGISINKFIAKIASDYNKPNGQKTVNPED---VLPF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +L IRK G+GKVT + + GI T ++ K + + ++ V G+ +
Sbjct: 178 LEALDIRKFHGVGKVTAEKMYQL-GIFTGTDLKSKTIEFLSTHFGKSGGYYYHVVRGVHT 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R RKS+++ERTFS + + KL IAE +S ++K + G+T+TLK+K +
Sbjct: 237 SEVKPNRIRKSLAAERTFSENLSSEIFMLEKLQHIAEEVSRRLKKSDVAGKTITLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDPT 297
F ++TR+ T+ Y+S + I++ A LL + + S+RL+G+ ++ N +K + PT
Sbjct: 297 DFTLQTRSKTVPYYVSETSIIMETAKDLLYQDSMQNSVRLLGISLSNLNTEKPK--KKPT 354
Query: 298 QK 299
K
Sbjct: 355 SK 356
>gi|238506557|ref|XP_002384480.1| DNA-directed polymerase kappa, putative [Aspergillus flavus
NRRL3357]
gi|220689193|gb|EED45544.1| DNA-directed polymerase kappa, putative [Aspergillus flavus
NRRL3357]
Length = 573
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 161/279 (57%), Gaps = 7/279 (2%)
Query: 13 LIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELR 72
LI +P + KY+ + R +F +YDP F +AS+DEAYL+IT C E I + +R
Sbjct: 144 LICLPINHQKYSAKAQEIRAIFAQYDPLFESASIDEAYLNITAYCTENQIDPEDAVNRMR 203
Query: 73 TSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIG 132
V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PNDR A++ F+ LP+RK+ G+G
Sbjct: 204 AEVLEQTKISVSAGIAANAKIAKIASNRNKPNGQFRVPNDRDAILEFMKDLPVRKVNGVG 263
Query: 133 KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN-TPQARF-RKS 190
+V E L D GI TC ++ + +LL +F F LGLG T P + RKS
Sbjct: 264 RVFEREL-DAVGIKTCGDIYSQRALLAKLFGEKAFHFLAQCYLGLGRTKIQPVENYERKS 322
Query: 191 ISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 250
+ +E TF+ K L KL IA+ L D+ + +GRTL LK+K A+FEV +R
Sbjct: 323 VGTESTFNEMGGKEALREKLWAIAQELEKDLTRTEFKGRTLVLKVKLATFEVLSRQCQPP 382
Query: 251 KYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 285
K + ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 383 KAVFLAKDLYTFSLPMLEKLEKEIPNMRLRLLGLRCTNL 421
>gi|403376374|gb|EJY88163.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 685
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 171/302 (56%), Gaps = 15/302 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCPELIF+P + KY+ S + + + +YDPN+ + DEA LDIT+
Sbjct: 321 MPGFIAKKLCPELIFIPNNMKKYSKVSKVFKGILEQYDPNYESLGSDEANLDITDYLNAN 380
Query: 61 GIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NKPNGQ L D +
Sbjct: 381 NMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNKPNGQTYLKPDEQTI 440
Query: 117 MTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG 174
+ F+ L +RKI GIG++TE IL D+F T +++L K + T F
Sbjct: 441 LDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQIALKERTVYFLFRAA 497
Query: 175 LGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
LG+ S N + +KSIS TF K+ ++ L+ + K + G +
Sbjct: 498 LGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKINQLCTELAERVDKRKVAGLNI 556
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQF-NEDK 289
+L++KT F V +++TL+ YI + ED+ ++ LL+ P RLIG++++ N+ +
Sbjct: 557 SLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPARLIGVKLSHLKNQHE 616
Query: 290 VR 291
V+
Sbjct: 617 VK 618
>gi|154271913|ref|XP_001536809.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408796|gb|EDN04252.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 373
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIARKLCP+LI +P ++ KYT ++ R + +DP F +AS+DEAYL+IT C
Sbjct: 158 MAGFIARKLCPDLILIPQNYQKYTAKAEEIRAILSSFDPQFQSASIDEAYLNITGYCATN 217
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I LR+ V E+ + SAG+APN +AK+CS+ NKPNGQ +PNDR +M F+
Sbjct: 218 EIEPEVAVRRLRSQVMEQTKVAVSAGIAPNARIAKICSNWNKPNGQHYVPNDRSIIMKFM 277
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S +P+RKI G+G+V E L + GI C ++ ++ +F F + LGLGST
Sbjct: 278 SEIPVRKINGVGRVFEREL-EAIGIKNCSDIFTHRGVILPLFGEKCYKFLMQCYLGLGST 336
Query: 181 NT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 217
+ RKS+ +ERTF +D +A++ EML
Sbjct: 337 KIRPVEESERKSVGTERTFRDIDD-------IADLQEML 368
>gi|163786797|ref|ZP_02181245.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
gi|159878657|gb|EDP72713.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
Length = 369
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 32/303 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A KLCPELIFV TDF +Y+ S RK+F Y SLDEAYLD+TE +
Sbjct: 62 MSGRLAEKLCPELIFVRTDFERYSEISKRIRKIFYDYTDLVEPLSLDEAYLDVTE--NKI 119
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMT 118
G+ S IA+++R +++E GLT SAG++ N+ +AK+ SD NKPNGQ V P D V+
Sbjct: 120 GLPSATLIAQKIRQRIFDEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPED---VLQ 176
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF--------- 169
F+ L IRK G+GKV T E+M QKG +AD+
Sbjct: 177 FLEDLDIRKFYGVGKV------------TAEKMYQKGIFTGKDLKSKSADYLEKNFGKSG 224
Query: 170 --FLSVGLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGL 226
+ + G+ ++ R RKS+++ERTF + + KL +IAE +S + K +
Sbjct: 225 RSYYHIVRGIHNSKVKPNRIRKSLAAERTFRENLSSEIFMLEKLRQIAEEVSKRLDKSKV 284
Query: 227 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQF 285
G+T+TLK+K + F ++TR+ TL Y+S +L+ A LL + +L S+RL+G+ ++
Sbjct: 285 AGKTITLKIKYSDFTLQTRSKTLPYYVSEKAIVLETAKDLLYQDKLNNSVRLLGISLSNL 344
Query: 286 NED 288
N D
Sbjct: 345 NTD 347
>gi|403376378|gb|EJY88165.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 705
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 171/302 (56%), Gaps = 15/302 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCPELIF+P + KY+ S + + + +YDPN+ + DEA LDIT+
Sbjct: 220 MPGFIAKKLCPELIFIPNNMKKYSKVSKVFKGILEQYDPNYESLGSDEANLDITDYLNAN 279
Query: 61 GIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NKPNGQ L D +
Sbjct: 280 NMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNKPNGQTYLKPDEQTI 339
Query: 117 MTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG 174
+ F+ L +RKI GIG++TE IL D+F T +++L K + T F
Sbjct: 340 LDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQIALKERTVYFLFRAA 396
Query: 175 LGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
LG+ S N + +KSIS TF K+ ++ L+ + K + G +
Sbjct: 397 LGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKINQLCTELAERVDKRKVAGLNI 455
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQF-NEDK 289
+L++KT F V +++TL+ YI + ED+ ++ LL+ P RLIG++++ N+ +
Sbjct: 456 SLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPARLIGVKLSHLKNQHE 515
Query: 290 VR 291
V+
Sbjct: 516 VK 517
>gi|164660502|ref|XP_001731374.1| hypothetical protein MGL_1557 [Malassezia globosa CBS 7966]
gi|159105274|gb|EDP44160.1| hypothetical protein MGL_1557 [Malassezia globosa CBS 7966]
Length = 525
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 154/296 (52%), Gaps = 7/296 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+AR +CP LI VP Y S+ V KYD SLDEAYLDIT C E
Sbjct: 90 MAEFVARAICPNLIVVPAHMDVYKRSSEAVMAVLAKYDAQLYQRSLDEAYLDITSYCAEH 149
Query: 61 GISGI-EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G + ++A +LR V GLT S G+APNRLLAK+ SD KPNG + + R + F
Sbjct: 150 GHAHPRDVAAQLRADVLAATGLTVSVGIAPNRLLAKIASDRCKPNGLWYVAPTRQDALAF 209
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L +RK+ GIG+V E +L+ I+TC ++ ++ L ++G+G
Sbjct: 210 MHDLSVRKVPGIGQVMERMLQ-AMSIHTCHDLWERRIELSLCIDSYRMLLASALGIGDAH 268
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
P R+S+ E TF+ T D L+ KL E L D+ RGRT++L K +
Sbjct: 269 VTLPARTARRSVGRELTFAPTSDPTHLHAKLRATCEQLERDLATLEYRGRTVSLVGKHDT 328
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-----LPVSLRLIGLRVTQFNEDKV 290
FE TRA + +SS +D+ LL+ E +P+ LRLIG+RV+ + +V
Sbjct: 329 FERFTRARACPQGVSSFDDLYGVVHALLEQERASFPVPLCLRLIGVRVSSLIDLQV 384
>gi|86143650|ref|ZP_01062026.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
gi|85829693|gb|EAQ48155.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
Length = 367
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 173/300 (57%), Gaps = 11/300 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +ARKLCP+LIFV T F +Y S R+VF +Y SLDEAYLD+TE ++
Sbjct: 62 MAGALARKLCPDLIFVKTRFDRYREISAQIREVFHEYTDLVEPLSLDEAYLDVTE-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+E+R + E+ GL SAG++ N+ +AKV SD+NKPNGQ V P + V+ F
Sbjct: 121 NPSATLIAKEIRAKIKEKTGLNASAGISINKFIAKVASDVNKPNGQKTVNPEE---VLPF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ +L IRK G+GKVT + + GI T ++ K L F S + + +V G+
Sbjct: 178 LEALDIRKFYGVGKVTAEKMYQL-GIFTGNDLKSKSLEFLQEKFGKS-GNHYYNVVRGIH 235
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +ERTFS + + +L IAE + ++K + G+T+TLK+K
Sbjct: 236 LSEVKPHRIRKSLGAERTFSENISSEIFMLERLENIAEEIERRLKKSNVAGKTVTLKIKY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN-EDKVRAPSD 295
+ F ++TR+ TL YI S E I + A LL E + S+RL+G+ + N EDK PS+
Sbjct: 296 SDFTLKTRSKTLPYYIRSKEVIYETAKELLYQEKMENSVRLLGITLANLNTEDKREKPSE 355
>gi|307110508|gb|EFN58744.1| hypothetical protein CHLNCDRAFT_140443 [Chlorella variabilis]
Length = 864
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA KLCP+L+FV DF KYT S R + YDP SLDEA LD T+ C R
Sbjct: 142 MPGFIALKLCPDLVFVAPDFAKYTAASQRVRAILRDYDPGLQPGSLDEAALDATDCCAAR 201
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G+ G ++A E+R V ++ GLTCS G+APNR+LAK+CSD NKPNGQF L R AVM F+
Sbjct: 202 GLGGGQVAAEIRRRVQQDTGLTCSVGIAPNRMLAKICSDRNKPNGQFELEPRREAVMDFM 261
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 158
L IRK+ G+GKVT+ L F + TC ++L LL
Sbjct: 262 RDLSIRKVPGVGKVTQKYL-AAFEVQTCGDLLTHKGLL 298
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 294
++RTRA TL ++IS+++D+ A LL AELP LRL+GLRV+ F + RAP
Sbjct: 298 LQLRTRAQTLPRHISAADDLFAAARRLLLAELPCELRLLGLRVSGFLQAPRRAPG 352
>gi|219112721|ref|XP_002178112.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410997|gb|EEC50926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 460
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 187/340 (55%), Gaps = 42/340 (12%)
Query: 1 MPGFIARKLCPEL-------IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 53
M G+I +L EL I VP+ F Y S R V +YDP+ SLDEAY+D+
Sbjct: 127 MAGWIGDRLVEELSSGTKKLIHVPSRFDLYRTKSHQVRNVLSQYDPHLRCYSLDEAYMDL 186
Query: 54 TEVC---------RER---GISGIEIAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDI 100
ER ++G ++ +++R+ V E GLTCSAG+APN LL+K+ SD
Sbjct: 187 APYLALKLTRNWDHERISAVLAGSQVLQDMRSRVTEVTGGLTCSAGLAPNFLLSKIASDR 246
Query: 101 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 160
NKPNGQ ++P+D +++ F+ LP RK+ GIG+VT IL FGI T ++ ++ SL+
Sbjct: 247 NKPNGQCLVPSDHESIIGFLHPLPTRKVSGIGRVTAKILSS-FGIATVADLYRERSLVRF 305
Query: 161 VFSHSTADFFLSVGLGLGSTN--------TPQARFRKSISSERTFSVTEDKALLYRKLAE 212
+F ++A+F L +G ++ T +K IS ERTF+ E + KL E
Sbjct: 306 LFQEASAEFLLRASIGCSGSDERNADDVETDDGPGQKGISRERTFAAKESWTAINLKLEE 365
Query: 213 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK--YISSSEDILKHASVLLKAE 270
IAE+LS+DM+ + + T+T+K+K SF+ +R+ +L + +I ++ D+ A LL+ E
Sbjct: 366 IAELLSSDMKHKNIFAHTVTVKVKLRSFDCLSRSRSLGRGVFIQAAADLRPIALDLLR-E 424
Query: 271 L------PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 304
L ++RL+G+R + F + D QK++ +
Sbjct: 425 LKDEFSGSFAVRLLGIRCSSFMGES----HDKAQKSIDTY 460
>gi|340377599|ref|XP_003387317.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 723
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 151/233 (64%), Gaps = 6/233 (2%)
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++ E+R ++ LT SAG+A N++LAK+ SD+NKPNGQ+++P R ++ FI LPI
Sbjct: 311 KVVSEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILEFIRKLPI 370
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
RK+ GIGKVTE +L + GI T ++ K LL +FS + D+F+++ LG+GS
Sbjct: 371 RKVSGIGKVTEKML-NALGIVTGADIYDKRGLLRLMFSKCSYDYFMNICLGIGSCTVHSE 429
Query: 186 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 245
RKSIS+ERTF + L++K ++ L+ ++++ ++G+T+TLKLKT++FEV+ R
Sbjct: 430 WERKSISTERTFPDIWKPSELFQKCHKLCYSLTEEVEESNIKGKTVTLKLKTSAFEVKQR 489
Query: 246 AVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLRVTQFNEDKVRAPS 294
++T ISS DI K A +LL+ E+ + LRL+G+R++ E ++PS
Sbjct: 490 SMTFPNPISSFADIHKAARILLETEMKNNSQLKLRLMGVRLSSL-EGTSKSPS 541
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 9/88 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPGFIA+KLCP+L+ V + F+KY S R++ YDP F + LDEAYLDITE E
Sbjct: 142 MPGFIAKKLCPQLVIVKSHFSKYQEVSQTVREILSNYDPLFSSVGLDEAYLDITEYVTEL 201
Query: 60 -RGISGIEIAEELRTSVYEEAGLTCSAG 86
RG +E + V EE +T S G
Sbjct: 202 MRG-------KEEQVPVEEENRVTQSFG 222
>gi|332879162|ref|ZP_08446863.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682962|gb|EGJ55858.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 353
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 174/292 (59%), Gaps = 10/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +ARK CP LIFVP F +Y S R +F +Y SLDEAYLD+T +
Sbjct: 48 MSGVLARKRCPHLIFVPPRFERYKEISRHIRSIFHRYTDLVEPLSLDEAYLDVTH-NKVG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R +++ E GLT SAG++ N+ +AK+ SD+NKPNGQ + D + F+
Sbjct: 107 NPSATLIAQEIRQAIFAETGLTASAGISINKFIAKIASDVNKPNGQKTVTQDE--IQDFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
+L ++K GIGKVT + G+ T +++ QK + L F +S ++ + G+ +
Sbjct: 165 DALNVKKFYGIGKVTAEKMY-ALGVFTGKDLRQKSLAFLERNFGNSGKHYY-QLARGIHN 222
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E+TF+ +T + +L ++L IA ++ + ++ + G+TLT+K+K
Sbjct: 223 GEVQPFRIRKSVGAEQTFAENLTSEIYML-KELDSIASEVAMRLAQQKVAGKTLTIKIKY 281
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
+ F ++TR+ TL+ YISS E+I+ + S LL + L S+RL+G+ ++ N D
Sbjct: 282 SDFSIQTRSKTLKDYISSKEEIMLYISELLYQDRLSDSVRLLGISLSHLNND 333
>gi|170588497|ref|XP_001899010.1| polk-prov protein [Brugia malayi]
gi|158593223|gb|EDP31818.1| polk-prov protein, putative [Brugia malayi]
Length = 358
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 142/269 (52%), Gaps = 60/269 (22%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT------ 54
MPGFIA+KLCP+L V F KY S + RK+F YDP+F A LDEAYLD+T
Sbjct: 82 MPGFIAKKLCPQLRIVHGCFDKYREASSVARKIFRDYDPDFYADGLDEAYLDLTTYIQNR 141
Query: 55 ---------------------------------------EVC----------RERGISGI 65
E+C R+ G+
Sbjct: 142 FRTGSVEHERIRYMGECVCRLPLVAENEIHHLNKAEITEEICTKCKKLRKCVRDHITFGV 201
Query: 66 EIAE---ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 122
+I E E+R V + GLTCSAG+APN LLAKVCSDINKPNGQ+ L N+R AV+TF+
Sbjct: 202 DIDEVVREMRFRVEQAVGLTCSAGIAPNSLLAKVCSDINKPNGQYRLLNEREAVLTFLKD 261
Query: 123 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST-N 181
LPIRKI GIG V E +L+ + G+ C + ++ ++ +F+ + ++FL + LG+ +
Sbjct: 262 LPIRKISGIGPVMEAVLKGI-GLEKCVDFYERRGIISLLFTQRSYEYFLRIALGISQVFS 320
Query: 182 TPQARFRKSISSERTFSVTEDKALLYRKL 210
Q RKSIS+ERTF T D L ++
Sbjct: 321 ADQKMRRKSISTERTFHPTGDLGALLEEM 349
>gi|372208892|ref|ZP_09496694.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium S85]
Length = 348
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 169/292 (57%), Gaps = 10/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A+K+CPELIFV +DF +Y S+L R +F +Y SLDEAYLD+T ++
Sbjct: 48 MASSLAKKMCPELIFVRSDFARYKEISNLVRSIFREYTDLIEPLSLDEAYLDVT-FNKKE 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R + E+ GL SAG+APN+ +AK+ SDINKPNGQ + D V+ F+
Sbjct: 107 CPSATLIAQEIRIKIKEQTGLNASAGIAPNKFVAKIASDINKPNGQKTIAPDE--VIDFL 164
Query: 121 SSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
LPIRK G+G K TE + R GI T ++ K S A + S+ G+ +
Sbjct: 165 EVLPIRKFYGVGKKTTEKMYR--LGIFTGADLKSKSIAFLEQHFKSAAQHYYSIVRGIHN 222
Query: 180 TNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +E T+ ++T + +L KL +++ + +QK ++GRT+TLK+K
Sbjct: 223 SPVKPFRTRKSVGAEHTYLENLTSEVFML-EKLQQLSREIEGRLQKNQVKGRTVTLKIKY 281
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNED 288
+ F TR+ TL ++S+ + I K LL + ++ S+RL+G+ + + +
Sbjct: 282 SDFSQTTRSKTLDTFVSTHQQIYKVIKELLYQQKVSNSVRLLGISINNLDNE 333
>gi|163754636|ref|ZP_02161758.1| putative DNA polymerase [Kordia algicida OT-1]
gi|161325577|gb|EDP96904.1| putative DNA polymerase [Kordia algicida OT-1]
Length = 370
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 168/292 (57%), Gaps = 8/292 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GF+A+K CPELIFV F +Y S RK+F +Y SLDEAYLD+T+ ++
Sbjct: 62 MSGFLAKKRCPELIFVRPRFDRYKEISTQIRKIFYEYTDLVEPLSLDEAYLDVTK-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAEE+R + ++ GLT SAG++ N+ +AKV SD NKPNGQ +P + V+ F+
Sbjct: 121 NPSASLIAEEIRAKILKDVGLTASAGISINKFIAKVASDYNKPNGQKTVPPEE--VLDFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+L IRK G+GKVT + + GI T +++ K + F+ +V G+ +
Sbjct: 179 EALDIRKFYGVGKVTAERMYQL-GIFTGKDLKTKDVDFLTEHFGKSGKFYFNVVRGIHLS 237
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KS+ +ERTFS +T + +L KL IA L ++K + G+T+TLK+K +
Sbjct: 238 EVKPNRIAKSVGAERTFSDNLTSEIFML-EKLENIANELEKRLKKYAISGKTVTLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 289
F +TR+ T+ +I+ IL+ A LL E L S+RL+G+ ++ N DK
Sbjct: 297 DFTTQTRSKTIAYFIADKSLILETAKELLYQEKLKDSVRLLGISLSNLNTDK 348
>gi|332292065|ref|YP_004430674.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332170151|gb|AEE19406.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 370
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 178/305 (58%), Gaps = 13/305 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +ARKLCP+LIFV T+F +Y S R VF ++ SLDEAYLD+TE +
Sbjct: 61 MAGALARKLCPDLIFVKTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYLDVTE--NKV 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S IA +R + E+ GL SAG++ N+ +AKV SDINKPNGQ +P + V+TF
Sbjct: 119 GMPSATVIASWIRQRIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEE--VITF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADFFLSVGLGLG 178
+ L IRK GIGK T + + GI T +M K L F S A ++ + G+
Sbjct: 177 LEELDIRKFYGIGKKTAEKMY-LHGIFTGMDMKMKSKEYLSDNFGKSGA-YYYDIVRGIQ 234
Query: 179 STNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R RKS+++ERTFS +T + +L KL IAE + + K + G+T+TLK+K
Sbjct: 235 YSEVRPNRIRKSLAAERTFSENITSEIFML-EKLDIIAEEVEKRLAKSQVAGKTITLKIK 293
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN-EDKVRAPS 294
+ F ++TR+ TL+ Y+ S E IL+ A LL E + S+RL+G+ ++ N ED+ + +
Sbjct: 294 YSDFTLQTRSKTLELYVRSKEIILETAKDLLYQEKMKNSVRLLGISLSNLNTEDRKKKDA 353
Query: 295 DPTQK 299
+ K
Sbjct: 354 EKAVK 358
>gi|386819686|ref|ZP_10106902.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
gi|386424792|gb|EIJ38622.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
Length = 367
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 173/305 (56%), Gaps = 9/305 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G+ A+K CPELIFV F +Y S R +F +Y SLDEAYLD+TE ++
Sbjct: 62 MSGYQAKKNCPELIFVRPRFDRYKEISTKIRTIFLEYTDLVEPLSLDEAYLDVTE-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++EE GLT SAG++ N+ +AK+ SD NKPNGQ + D V+ F+
Sbjct: 121 NPSASNIAKEIRDRIFEEVGLTASAGISINKFVAKIASDYNKPNGQKTVEPDE--VIPFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
L IRK G+GKVT + + GI T +++ +K L F S A F+ +V G+
Sbjct: 179 EDLEIRKFYGVGKVTTQKMYSL-GIFTGKDLKEKSVEFLTENFGKSGA-FYYNVVRGIHL 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ +ERTFS + + +L IA L ++K + G+T+TLK+K +
Sbjct: 237 SEVKPNRIPKSVGAERTFSENLSSEVFMLERLESIANELERRLKKSKIAGKTITLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDPT 297
F+++TR+ TL +I+ IL+ A LL E L S+RL+G+ + N +K + P
Sbjct: 297 DFKLQTRSKTLDYFIADKSLILETAKELLYQEKLENSVRLLGISLANLNTEK-KKKETPI 355
Query: 298 QKTLT 302
QK ++
Sbjct: 356 QKEVS 360
>gi|429750894|ref|ZP_19283893.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429163655|gb|EKY05858.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 354
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 169/299 (56%), Gaps = 7/299 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G AR+LCP LIFVP F +Y S R +F Y SLDEAYLD+T ++
Sbjct: 48 ISGAQARRLCPHLIFVPPRFERYKEISLQIRGIFHDYTDLVEPLSLDEAYLDVT-TNKKN 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++EE GLT SAG++ N+ +AK+ SD KPNGQ + D V F+
Sbjct: 107 NPSATLIAQEIRQRIFEETGLTASAGISVNKFVAKIASDFRKPNGQTTITADE--VQDFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + ++ GI +++ +K ++ +F + G+
Sbjct: 165 DVLDVRKFYGIGKVTAQKMYEL-GIFKGKDLREKSLAFLERNFGNSGLYFYELSRGIHRA 223
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ +E TF+ + + L+ IAE ++ +Q++ + GRT+TLK+K +
Sbjct: 224 EVQPFRIRKSVGAEHTFAENFTSEIYMEEALSAIAEDVARRLQRQEVAGRTITLKIKYSD 283
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQF-NEDKVRAPSDP 296
F V+TR+ TL ++ISS E+I+ +A LL E L S+RL+G+ V+ NE++ P P
Sbjct: 284 FTVQTRSKTLAEFISSQEEIVLYARELLYQERLKESVRLLGISVSHLNNEEREDTPKKP 342
>gi|402585023|gb|EJW78963.1| polymerase kappa isoform 9, partial [Wuchereria bancrofti]
Length = 301
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 149/286 (52%), Gaps = 66/286 (23%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT------ 54
MPGFIA+KLCP+L V F KY S + RK+F YDP+F A LDEAYLD+T
Sbjct: 16 MPGFIAKKLCPQLKIVHGRFDKYREASSVARKIFRDYDPDFYADGLDEAYLDLTIYIQNR 75
Query: 55 ---------------------------EVCR--ERGIS--------------------GI 65
E+C + GI+ G+
Sbjct: 76 LRSGSVEHERIRYMGECVCRLPLVTENEICHLTKAGITEEICTKCKKLRKCVRDHITFGV 135
Query: 66 EIAE---ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 122
++ E E+R V + GLTCSAG+APN LLAKVCSDINKPNGQ+ L N+R AV+TF+
Sbjct: 136 DVDEVVREMRFRVEQAVGLTCSAGIAPNSLLAKVCSDINKPNGQYRLLNEREAVLTFLKD 195
Query: 123 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 182
LPIRKI GIG V E +L+ + G+ C ++ ++ ++ +F + ++FL + LG+ +
Sbjct: 196 LPIRKISGIGPVMEAVLKGI-GLEKCADLYERRGIISLLFPQRSYEYFLRIALGISHVFS 254
Query: 183 PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 227
+ RKSIS+ERTF T D L + EML K L+
Sbjct: 255 ADRKMKRKSISTERTFHPTGDLGAL------LEEMLCRYFFKSWLK 294
>gi|149371089|ref|ZP_01890684.1| putative DNA polymerase [unidentified eubacterium SCB49]
gi|149355875|gb|EDM44433.1| putative DNA polymerase [unidentified eubacterium SCB49]
Length = 369
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 172/293 (58%), Gaps = 10/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A KLCP LIFV TDF +Y SD RK+F +Y SLDEAYLD+TE ++
Sbjct: 63 MAGSLAIKLCPHLIFVKTDFERYKEISDRVRKIFFEYTDLVEPLSLDEAYLDVTE-NKKG 121
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA E+R + E GL SAG++ N+ +AKV SDINKPNGQ +P + V+ F+
Sbjct: 122 NPSASLIALEIRQKIKERTGLNASAGISINKFIAKVASDINKPNGQKTVPPEE--VIPFL 179
Query: 121 SSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
L I+K G+GKV E + R GI T ++ K L F S A ++ ++ G+
Sbjct: 180 EVLDIKKFYGVGKVMKEKMYRH--GIYTGLDLKGKSIEFLSENFGKSGA-YYYNIVRGIH 236
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
++ +R RKS+++ERTFS + + KLA I+E + ++K + G+T+TLK+K
Sbjct: 237 NSEVKPSRTRKSLAAERTFSENIASEIFMLEKLAPISEEVERRLKKSKVAGKTVTLKIKY 296
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 289
+ F ++TR+ TL YIS I++ + LL E + S+RL+G+ ++ N +K
Sbjct: 297 SDFTLQTRSKTLPLYISDKNLIMETVTELLFQEGMKNSVRLLGISMSNLNNEK 349
>gi|224006311|ref|XP_002292116.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972635|gb|EED90967.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 444
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 146/258 (56%), Gaps = 8/258 (3%)
Query: 1 MPGFIARKLCPEL-------IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 53
MPG++ L EL FV +DF Y S R V +YDPN SLDEAY+DI
Sbjct: 187 MPGYLGSTLVKELSGGKETLTFVKSDFDLYKRKSGEVRAVLEEYDPNLSMYSLDEAYMDI 246
Query: 54 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 113
+ + ++ +R V GLTCSAG+A N LLAKV SD+NKPNGQ + +
Sbjct: 247 GPYLKILLSTAQQLLNSIRQRVKNATGLTCSAGLASNFLLAKVASDVNKPNGQCFVGSSE 306
Query: 114 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 173
++ F + L IRKI GIG+VTE +LR V + T +++ + + +F ++A+ +
Sbjct: 307 AEILAFANPLSIRKISGIGRVTEKMLRGVCEVETVKDLYDHRAEVYFLFKPASANLMMRA 366
Query: 174 GLGLGSTNT-PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
+G T +A RK IS ERTFS T + L KL I + L D+++ L+ +T+T
Sbjct: 367 SIGYAETGKHHEATTRKGISHERTFSPTSSWSDLCNKLETIVQALVHDLKQRNLKPKTIT 426
Query: 233 LKLKTASFEVRTRAVTLQ 250
LK+K A+F++ TRAVTL+
Sbjct: 427 LKVKLANFDILTRAVTLE 444
>gi|300776039|ref|ZP_07085898.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300505172|gb|EFK36311.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 365
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 169/291 (58%), Gaps = 12/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F +Y S R++F +Y SLDEAYLD+TE ++
Sbjct: 61 MPSKTAKEKCPQLIFVPPRFARYKEISKKIREIFYEYTDLVEPLSLDEAYLDVTE--NKK 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S IA+E+R ++E+ GLT SAG++ N+ LAKV SDINKPNGQ + D+M F
Sbjct: 119 GMESANLIAKEIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKME--EF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGL 177
+ LP+ K G+GKVT + + + GI ++ L+K SL L +F S ++ +V G+
Sbjct: 177 LEELPVEKFYGVGKVTANKMFSL-GIYKGKD-LKKKSLEDLIRIFGKSGQHYY-NVVRGI 233
Query: 178 GSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
++ R +KS++ ERT F D+ + KL +A+ L +QK + GRTLTLK+K
Sbjct: 234 HTSEVKPHRIQKSVAVERTFFEDLLDEQQINEKLESLAQELHQRLQKNNILGRTLTLKIK 293
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 286
F + TR++T ++Y SS E L + ++RL+GL ++ N
Sbjct: 294 YKDFSLFTRSITKEEYFSSPEQYFTTGKKLWELRPFDKAVRLLGLSLSHLN 344
>gi|260061439|ref|YP_003194519.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
gi|88785571|gb|EAR16740.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
Length = 366
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 165/293 (56%), Gaps = 10/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G AR+LCPEL+FV F +Y S R +F +Y SLDEAYLD+T +
Sbjct: 62 MSGVQARRLCPELVFVKPRFDRYREVSRQIRGIFLEYTDLVEPLSLDEAYLDVT--ANRK 119
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S IA E+R + EE GLT SAG++ N+ +AKV SD NKPNGQ +P + V F
Sbjct: 120 GMPSATLIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPE--DVQEF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ SL IRK G+GKVT + + GI T ++ Q L F S ++ V G+
Sbjct: 178 LESLEIRKFHGVGKVTAEKM-NALGIFTGADLRRQSEHFLTGHFGKSGHHYYRVV-RGVH 235
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R KS+ +ERTFS + + KL +IAE LS ++ G+T+TLK++
Sbjct: 236 DSPVQPSRVPKSLGAERTFSENLSSEVFMVEKLTKIAEELSRRLRTRNRSGKTITLKIRY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 289
+ F ++TR+ TL +YI S E IL A LL + L S+RL+G+ ++ + +K
Sbjct: 296 SDFSLQTRSRTLAEYIDSPERILAAARDLLYQQPLENSVRLLGISLSNLDTEK 348
>gi|295132163|ref|YP_003582839.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
gi|294980178|gb|ADF50643.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
Length = 354
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 170/302 (56%), Gaps = 13/302 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M IA++ CP++IFV F +Y S R +F +Y SLDEAYLD+TE ++
Sbjct: 48 MSSVIAKRNCPDIIFVKARFDRYREISQQIRSIFFEYTDLVEPLSLDEAYLDVTE-NKKG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA E+R + ++ GL SAG++ N+ +AKV SDINKPNGQ V P + V+ F
Sbjct: 107 NPSATMIAREIREKIKQKTGLNASAGISVNKFIAKVASDINKPNGQKTVNPEE---VLDF 163
Query: 120 ISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ L IRK G+GKVT E + R GI T +++ K A ++ +V G+
Sbjct: 164 LEQLEIRKFYGVGKVTAEKMYR--LGIFTGKDLKSKSEAYLADHFGKHGPYYYNVVRGIH 221
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +ERTFS + + KL IAE + +QK + G+T+TLK+K
Sbjct: 222 ESEVKPNRMRKSLGAERTFSENISSEIFMLEKLTNIAEEIERRLQKSKVAGKTVTLKIKY 281
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDP 296
+ F ++TR+ T+ +ISS E IL+ A LL E + S+RL+G+ ++ N D +PS
Sbjct: 282 SDFTLQTRSKTISYFISSKELILEMAKELLYQEKMKDSVRLLGISLSNLNTD---SPSVK 338
Query: 297 TQ 298
T+
Sbjct: 339 TK 340
>gi|299117623|emb|CBN75465.1| hypothetical protein Esi_0099_0091 [Ectocarpus siliculosus]
Length = 713
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 154/278 (55%), Gaps = 22/278 (7%)
Query: 67 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 126
+AEE+R + E LT S G+ PN +LAK+ SD NKP+GQ + DR V+ F+ LP+R
Sbjct: 283 LAEEIRGRIREATKLTASVGIGPNFMLAKIASDWNKPDGQMCIGGDRAEVLRFLHDLPVR 342
Query: 127 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN----T 182
KIGG+GKV E LR+ G+ TC ++ ++ + V + T+ + + LG+ S + T
Sbjct: 343 KIGGVGKVQEKCLREALGVVTCGDLFRERGSVIHVMTPHTSRWLIKASLGIASADHDVAT 402
Query: 183 PQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
QA+ RK IS ERTF L K EI + L+A+M +GL +T+ LK+KT
Sbjct: 403 EQAQAVGAVTRKQISKERTFGELSAPRDLLNKCREICDSLAAEMATKGLEAKTVGLKVKT 462
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-----------PVSLRLIGLRVTQFN 286
F+VRT+ T Y+SS++D+ AS LL+ E+ + LRL+G+R + F
Sbjct: 463 TKFQVRTQDSTGNAYVSSADDLFSAASALLQREIQGAAAASAPGGKLRLRLMGVRASGFR 522
Query: 287 EDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSD 324
+ AP P Q TL F++S A G+ S G+D
Sbjct: 523 -GQAGAPILPGQATLDGFLSSKAAEGGCQGEDES-GND 558
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI RKLCPEL+FV D+ KYT ++ R++F +YDP A SLDEAYL++T+V ER
Sbjct: 135 MPGFIGRKLCPELVFVKPDYEKYTVVAEQIREIFREYDPRMRAYSLDEAYLNVTKVLTER 194
Query: 61 -GISG 64
G+ G
Sbjct: 195 LGLDG 199
>gi|408491441|ref|YP_006867810.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
gi|408468716|gb|AFU69060.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
Length = 365
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 172/293 (58%), Gaps = 10/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A +LCP LIFV F +Y S + RKVF +Y SLDEAYLD+T V +
Sbjct: 62 MSGRLATRLCPHLIFVKPRFERYKEISQIIRKVFFEYTDLVEPLSLDEAYLDVT-VNKFN 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +A E+R + + GL SAG++ N+ +AK+ SDINKPNGQ +P + V+ F+
Sbjct: 121 YPSATILAREIREKIKDRTGLNASAGISINKFIAKIASDINKPNGQKTIPPE--DVIDFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+L IRK G+GKVT+ + + GI T ++ L+ L F S +F +V G+
Sbjct: 179 ETLDIRKFHGVGKVTQEKMYGL-GIFTGVDLKLKTLEYLQDHFGKSGLHYF-NVVRGVHL 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
++ +R RKS+ +ERTFS + + KL +IAE + ++ + G+T+TLKLKT+
Sbjct: 237 SDVKPSRIRKSLGAERTFSKNISSEIYMLEKLEDIAEEVERRLKGSRVAGKTITLKLKTS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
F ++TR+ TL+ +ISS I++ LL E P+ S+RL+G+ ++ N DK
Sbjct: 297 DFNIQTRSKTLKFFISSKALIMEETKALLFQE-PIKDSIRLLGISLSNLNTDK 348
>gi|298207148|ref|YP_003715327.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
gi|83849783|gb|EAP87651.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
Length = 368
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 176/299 (58%), Gaps = 10/299 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G A++LCPELIFV T+FT+Y S R++F +Y SLDEAYLD+TE ++
Sbjct: 62 MSGAQAQRLCPELIFVKTNFTRYKECSQQIREIFYEYTDKVEPLSLDEAYLDVTE-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R + + GL SAG++ N+ +AKV SDINKPNGQ + + V+ F+
Sbjct: 121 NPSATLIAKEIREKIKAKTGLNASAGISINKFIAKVASDINKPNGQKTINPEE--VIPFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+L IRK GIGKVT + + GI T ++ K + ++ + G+ ++
Sbjct: 179 ETLDIRKFYGIGKVTAEKMY-LHGIFTGNDLKSKSLEYLEEHFGKSGTYYYHIVRGIHNS 237
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +ERTFS +T + ++ R L IAE + ++K + G+T+TLK+K +
Sbjct: 238 EVKPHRTRKSLGAERTFSENITSELFMMER-LEHIAEEIERRLEKSNVAGKTVTLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN-EDKVRA-PS 294
F ++TR+ TL Y+ E IL+ A LL + ++ S+RL+G+ ++ N ED+ +A PS
Sbjct: 297 DFTLQTRSKTLPYYLRKKEVILETAKELLYQDDMKNSVRLLGISLSNLNTEDRPKAKPS 355
>gi|85816953|gb|EAQ38137.1| DNA polymerase IV [Dokdonia donghaensis MED134]
Length = 370
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/295 (39%), Positives = 175/295 (59%), Gaps = 13/295 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +ARKLCP+LIFV T+F +Y S R VF ++ SLDEAYLD+TE +
Sbjct: 61 MAGALARKLCPDLIFVKTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYLDVTE--NKV 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S IA +R + E+ GL SAG++ N+ +AKV SDINKPNGQ +P + V+TF
Sbjct: 119 GMPSATVIASWIRQCIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEE--VITF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ L I+K GIGK T + + GI T ++ L+ L F S A ++ + G+
Sbjct: 177 LEELDIKKFYGIGKKTAEKMY-LHGIFTGMDLKLKSKEYLSDNFGKSGA-YYYDIVRGIQ 234
Query: 179 STNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R RKS+++ERTF ++T + +L KL IAE + ++K + G+T+TLK+K
Sbjct: 235 HSEVKPNRIRKSLAAERTFRENITSEIFML-EKLEHIAEEVERRLEKSKVAGKTITLKIK 293
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN-EDK 289
+ F ++TR+ TL Y+ S E IL+ A LL E + S+RL+G+ ++ N ED+
Sbjct: 294 YSDFTLQTRSKTLDLYVRSKEIILETAKDLLYQEKMKNSVRLLGISLSNLNTEDR 348
>gi|340386730|ref|XP_003391861.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 427
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 146/229 (63%), Gaps = 11/229 (4%)
Query: 57 CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
C ER + E+R ++ LT SAG+A N++LAK+ SD+NKPNGQ+++P R +
Sbjct: 206 CAER------VVNEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKI 259
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
+ FI LPIRK+ GIGKVTE +L + GI T ++ K LL +FS + D+F+++ LG
Sbjct: 260 LEFIRKLPIRKVSGIGKVTEKML-NALGIVTGADIYDKRGLLRLMFSKCSYDYFMNICLG 318
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+GS RKSIS+ERTF + L++K ++ L+ ++++ ++G+T+TLKLK
Sbjct: 319 IGSCTVHSEWERKSISTERTFPDIWKPSELFQKCHKLCYSLTEEVEESNIKGKTVTLKLK 378
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLR 281
T++FEV+ R++T ISS DI K A +LL++E+ + LRL+G +
Sbjct: 379 TSAFEVKQRSMTFPNPISSFADIHKAARILLESEMKNNSQLKLRLMGTK 427
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 59
MPGFIA+KLCP+L+ V + F+KY S R++ YDP F + LDEAYLDITE E
Sbjct: 40 MPGFIAKKLCPQLVIVKSHFSKYQEVSQTVREILSNYDPLFSSVGLDEAYLDITEYVTE 98
>gi|393779062|ref|ZP_10367315.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392610848|gb|EIW93608.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 353
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 167/291 (57%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 48 ISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+
Sbjct: 107 NPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITESE--VQNFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + + GI + +K ++ +++ + G+ +
Sbjct: 165 DRLDVRKFYGIGKVTAEKMYQL-GIFKGRNLREKSLEFLERNFGNSGNYYYELARGIHRS 223
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF+ +T + +L R+L IAE ++ + K+ + G+T+TLK+K +
Sbjct: 224 EVQPFRIRKSVGAEETFAENLTSEVYML-RELDHIAEDVARRLDKQQVAGKTVTLKIKYS 282
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 288
+F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 283 NFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|154413235|ref|XP_001579648.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
gi|121913857|gb|EAY18662.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
Length = 592
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 160/294 (54%), Gaps = 4/294 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M FIA +LCP L V + + Y +YS + RK+F KYD ++++ LDEA LD++E +
Sbjct: 140 MAVFIALQLCPHLKIVESHYELYKHYSSIVRKIFEKYDSHYISFGLDEASLDLSEHVKLD 199
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++IA+ ++ V+E+ LT S G+A LAK+ SD+NKPNG F + +DR + + FI
Sbjct: 200 YEKAMDIAKNIQKEVFEQTKLTISCGIAITPQLAKIASDVNKPNGIFEIKHDRESTLDFI 259
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
S LPIRKI GIG V E +L + GI T ++++ K + L F S LG+
Sbjct: 260 SKLPIRKIPGIGGVAEQLLHGI-GITTMKDVMDKKTDLWICMRPLFCQFIFSACLGINRQ 318
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
R ++SIS ERTF T D+ + + ++ + +Q+ + R +T+K K +SF
Sbjct: 319 TFGVTRHQQSISKERTFDNTNDRVFMEEIIEKLCMEVCKLLQEMNVLCRNVTVKFKDSSF 378
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRVTQFNEDKVR 291
+ TR ++ + DI +L EL V RL+G+R Q + + +
Sbjct: 379 QTITRCLSFDHDTNKIFDIFCACVKILNDELRSRYVKYRLLGVRCGQLSTPRAK 432
>gi|88801750|ref|ZP_01117278.1| DNA polymerase IV [Polaribacter irgensii 23-P]
gi|88782408|gb|EAR13585.1| DNA polymerase IV [Polaribacter irgensii 23-P]
Length = 360
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 174/294 (59%), Gaps = 10/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M F+A++ CP LIFV TDF +Y S R +F +Y SLDEAYLD+TE ++
Sbjct: 62 MSSFLAKQKCPHLIFVKTDFERYKEISQRIRAIFYEYTDLVEPLSLDEAYLDVTE-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S IA E+R +Y+E GL SAG++ N+ +AKV SDINKPNGQ + + V+ F+
Sbjct: 121 NLSASLIAVEIRKRIYDEIGLRASAGISINKFIAKVASDINKPNGQKTINPEE--VIEFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
++LP+ K G+GKVT + ++ GI T + L+K L L +F S A ++ + G+
Sbjct: 179 AALPVNKFYGVGKVTTAKMYNL-GIFTGND-LKKKPLEELMKLFGKSGAHYY-HIVRGIH 235
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
++ R RKSI++ERTFS + + +L +IAE L M+K +G+T+TLK+K
Sbjct: 236 NSAVKPNRIRKSIAAERTFSENISSEIFMIERLEQIAEELERRMKKTDTKGKTITLKIKY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKV 290
+ F +TR+ T+ ++ + ++ S LL + ++ S+RL+GL + ++V
Sbjct: 296 SDFTQQTRSKTMPHFMQAKKEFFPVVSELLYQQKITNSVRLLGLSFGNLDTEEV 349
>gi|420148930|ref|ZP_14656115.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754419|gb|EJF37809.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 353
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 168/291 (57%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 48 ISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKS 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+
Sbjct: 107 NPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE--AEVQDFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + + GI +++ +K ++ ++ + G+ +
Sbjct: 165 DRLDVRKFYGIGKVTAEKMYQL-GIFKGKDLREKSLEFLERNFGNSGHYYYELSRGIHRS 223
Query: 181 NTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF ++T + +L R+L IAE ++ + K+ + G+T+TLK+K +
Sbjct: 224 EVQPFRIRKSVGAEETFVENLTSEVYML-RELDHIAEDVARRLDKQQVAGKTVTLKIKYS 282
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 288
+F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 283 NFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|126662622|ref|ZP_01733621.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
gi|126626001|gb|EAZ96690.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
Length = 353
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 173/306 (56%), Gaps = 11/306 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G A+KLCP+LIFVP F +Y S RK+F Y SLDEAYLD+TE ++
Sbjct: 48 ISGIQAKKLCPDLIFVPPRFDRYKEISKQIRKIFLDYTDLVEPLSLDEAYLDVTE-NKKG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++EE GLT SAG++ N+ +AK+ SD NKPNGQ + D + F+
Sbjct: 107 NPSATLIAQEIRKRIFEEVGLTASAGISANKFVAKIASDYNKPNGQKTVNPDE--IEPFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
L ++K G+GKVT + + GI T ++ QK L F +S +F + G+ +
Sbjct: 165 EKLDVKKFYGVGKVTAEKMYQL-GIFTGYDLKQKSVEYLENHFGNSGLHYF-QIVRGIHN 222
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ +ERTF + + +L IA+ L +QK + G+T+TLK+K +
Sbjct: 223 SAVKPNRKIKSVGAERTFGENLSSEIFMEERLQSIAKELEKRLQKSKISGKTITLKIKYS 282
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQF-NEDKVRAPSDP 296
F ++TR+ TL ++S I+ A LL E L S+RL+G+ V NE+K R P
Sbjct: 283 DFTLQTRSKTLPYFVSDKNIIVDVAKDLLYQERLKNSVRLLGISVHNLNNEEKTRIPL-- 340
Query: 297 TQKTLT 302
TQK+++
Sbjct: 341 TQKSVS 346
>gi|256819502|ref|YP_003140781.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
gi|256581085|gb|ACU92220.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
Length = 353
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 167/291 (57%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 48 ISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKS 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+
Sbjct: 107 NPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE--AEVQDFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + + GI ++ +K ++ ++ + G+ +
Sbjct: 165 DRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGHYYYELSRGIHRS 223
Query: 181 NTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF ++T + +L R+L IAE ++ + K+ + G+T+TLK+K +
Sbjct: 224 EVQPFRIRKSVGAEETFPENLTSEVYML-RELDHIAEDVARRLDKQQVAGKTVTLKIKYS 282
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 288
+F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 283 NFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|429752207|ref|ZP_19285078.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429177425|gb|EKY18750.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 356
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 165/290 (56%), Gaps = 6/290 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 48 ISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFYEYTDLVEPLSLDEAYLDVT-VNKKG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++ E GLT SAG++ N+ +AK+ SD +KPNGQ + + V F+
Sbjct: 107 NPSATLIAQEIRQRIFNETGLTASAGISINKFIAKIASDYHKPNGQTTI--TQAEVQDFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + + GI +++ +K ++ ++ + G+ +
Sbjct: 165 DKLDVRKFYGIGKVTAEKMYQL-GIFKGKDLREKSLAFLERNFGNSGHYYYELSRGIHRS 223
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ +E TF+ + + R+L IAE + ++K+ + G+T+TLK+K +
Sbjct: 224 EVQPFRIRKSVGAEETFAENLTSEVYMERELERIAEDVVRRLKKQQVAGKTITLKIKYSD 283
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
F ++TR+ TL+ +ISS E+IL H LL E L S+RL+G+ V+ N +
Sbjct: 284 FTIQTRSKTLKDFISSKEEILLHIKELLYQERLSESVRLLGISVSHLNNE 333
>gi|420160537|ref|ZP_14667317.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
gi|394760405|gb|EJF42952.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
Length = 362
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 168/291 (57%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 57 ISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKG 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KP+GQ + V F+
Sbjct: 116 NPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITE--AEVQDFL 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + + GI ++ +K ++ +++ + G+ +
Sbjct: 174 DRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGNYYYELSRGIHRS 232
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF+ +T + +L R+L IAE ++ + K+ + G+T+TLK+K +
Sbjct: 233 EVQPFRIRKSVGAEETFAENLTSEVYML-RELEHIAEDVARRLDKQQVAGKTVTLKIKYS 291
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 288
+F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 292 NFTVQTRSKTLKDFISSKDDILLHIKELLYQEHPAESVRLLGISLSHLNNE 342
>gi|123425224|ref|XP_001306764.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
gi|121888356|gb|EAX93834.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
Length = 519
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 178/325 (54%), Gaps = 23/325 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFT-KYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 59
M F+A KLCP L V + KY +S ++VF KYDP F++ DEA LDIT + +
Sbjct: 143 MAVFVAMKLCPHLNVVHYNHGDKYMNFSKQVQEVFKKYDPEFVSFGCDEATLDITPLLND 202
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
+ ++A++++ V+++ LT S GVA L+K+ SDINKPNG F++P + + +F
Sbjct: 203 -NLHSDQLAKQIQQEVFDKTKLTVSIGVAHTPQLSKIASDINKPNGIFIVPKNDDDLKSF 261
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP+RKI GIG V E IL+ + GI TC ++L K + + SH F S +G+
Sbjct: 262 LHTLPVRKIPGIGGVNEQILKGI-GIETCGDILLKKAEIWLTMSHKFCRFVFSAAVGVQP 320
Query: 180 ---TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ PQ +SIS +RT T+DK L + +A +S M+K + R + +K K
Sbjct: 321 REYESGPQ----QSISKDRTIDATDDKCTLIDLVESLARKISKKMKKMRIACRNVAVKFK 376
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQFNEDKVRA 292
+F+V +++ T Y +S E L +AS+ L + E + LRL+G++ T +
Sbjct: 377 DINFKVISKSYTFD-YDTSDESDLVNASLKLLLEERQERSIKLRLVGVKATNLT-----S 430
Query: 293 PSDPTQKTLTNFM---TSGHASKKI 314
P D Q ++ F+ T + KKI
Sbjct: 431 PGDKKQSSIKKFLQEKTESSSPKKI 455
>gi|315224925|ref|ZP_07866744.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
gi|314945038|gb|EFS97068.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
Length = 353
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 168/291 (57%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 48 ISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KP+GQ + V F+
Sbjct: 107 NPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITE--AEVQDFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + + GI ++ +K ++ +++ + G+ +
Sbjct: 165 DRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGNYYYELSRGIHRS 223
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF+ +T + +L R+L IAE ++ + K+ + G+T+TLK+K +
Sbjct: 224 EVQPFRIRKSVGAEETFAENLTSEVYML-RELEHIAEDVARRLDKQQVAGKTVTLKIKYS 282
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 288
+F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 283 NFTVQTRSKTLKDFISSKDDILLHIKELLYQEHPAESVRLLGISLSHLNNE 333
>gi|301118068|ref|XP_002906762.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
gi|262108111|gb|EEY66163.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
Length = 601
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 124/238 (52%), Gaps = 31/238 (13%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPGFI ++LCP+L FVP + KY + R VF +YDP+F A SLDEA LD+T+ E
Sbjct: 135 MPGFIGKELCPDLHFVPVNMKKYAGVAAEIRAVFAEYDPDFEAFSLDEACLDLTDYIAEN 194
Query: 60 ----------------------------RGISGIEIAEELRTSVYEEAGLTCSAGVAPNR 91
R + ELR V++ LT SAG+A N
Sbjct: 195 WQKYISDAMDEIESKESDKEEWASTASGRAAIAAVVVRELRKKVFDCTQLTASAGIAVNS 254
Query: 92 LLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 151
+LAK+CSD+NKPNGQ+VLP R VMTFI LP+RKIGGIGKV E L + + T ++
Sbjct: 255 MLAKICSDMNKPNGQYVLPFSRERVMTFIRELPVRKIGGIGKVMEKTLNEALDVQTGGDL 314
Query: 152 LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK 209
+ + +FS TA + L LG+ Q RKS S ERTF D L K
Sbjct: 315 FDQRGKIAHLFSGKTAMWLLQTSLGVQERREKQE--RKSFSRERTFKRLSDPKQLEEK 370
>gi|429747821|ref|ZP_19281066.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429162315|gb|EKY04645.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 353
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 166/291 (57%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 48 ISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+
Sbjct: 107 NPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE--AEVQDFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + + GI ++ +K ++ ++ + G+ +
Sbjct: 165 DRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGHYYYELSRGIHRS 223
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF+ +T + +L R+L IAE + + K+ + G+T+TLK+K +
Sbjct: 224 EVQPFRIRKSVGAEETFAENLTSEVYML-RELDHIAEDVVRRLDKQQVAGKTVTLKIKYS 282
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 288
+F V+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 283 NFTVQTRSKTLKDFISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|402493090|ref|ZP_10839845.1| DNA polymerase IV 2 [Aquimarina agarilytica ZC1]
Length = 364
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 168/293 (57%), Gaps = 10/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +ARKLCPELIFV F +Y S R +F +Y SLDEAYLD+TE ++
Sbjct: 61 MSSTVARKLCPELIFVKHHFERYKEVSQQVRAIFFEYTDLVEPLSLDEAYLDVTE-NKKG 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IAEE+R + E+ GLT SAG++ N+ +AKV SD NKPNGQ V+P + V+ F
Sbjct: 120 NPSASLIAEEIRAKILEKTGLTASAGISINKFIAKVASDYNKPNGQKTVIPGE---VLDF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ +L I+K G+GKVT+ + GI T ++ K + L F S A +F V G+
Sbjct: 177 LENLDIKKFYGVGKVTQKKMY-ALGIYTGADLKTKTEAYLTQNFGKSGAHYFRIVR-GIH 234
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
++ R RKSI +ERTF+ + + +L E+++ L + K + G+T+TLK+K
Sbjct: 235 NSPVKPHRTRKSIGAERTFNENLASEIYMEARLKELSDELERRLLKSKVAGKTITLKIKY 294
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDK 289
+ F + TR+ TL YIS + + + A LL + ++ S+RL+GL + N K
Sbjct: 295 SDFTLHTRSKTLSYYISDASLLFEVAKELLYQQKMENSVRLLGLSLHNLNNTK 347
>gi|390953838|ref|YP_006417596.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
gi|390419824|gb|AFL80581.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
Length = 367
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 172/292 (58%), Gaps = 10/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +ARKLCPELIFV T+F +Y S RK+F +Y SLDEAYLD+TE ++
Sbjct: 62 MSGAMARKLCPELIFVKTNFDRYKEVSKQIRKIFLEYTDLVEPLSLDEAYLDVTE-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAEE+R + ++ GL SAG++ N+ +AK+ SDINKPNGQ L + V+ F+
Sbjct: 121 NPSASMIAEEIRKKIKKKTGLNASAGISINKFVAKIASDINKPNGQKTLSPEE--VVPFL 178
Query: 121 SSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+L ++K G+GKVT E + R GI T +++ K L F S A F+ +V G+
Sbjct: 179 ETLDVKKFYGVGKVTKEKMYR--LGIYTGKDLKGKSLEFLEENFGKSGA-FYHNVVRGIH 235
Query: 179 STNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
++ +R +KS+++E T F + + +L EIA + + K L G+T+TLK+K
Sbjct: 236 NSKVKPSRTQKSLAAEHTFFENISSEIFMMERLDEIAAEVEKRLHKSKLAGKTVTLKIKY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
+ F ++TR+ TL +++S E IL LL E + S+RL+G+ ++ N +
Sbjct: 296 SDFTLQTRSKTLPLFVASKELILDVVKELLFQERMKESVRLLGISISNLNNE 347
>gi|213963495|ref|ZP_03391749.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
gi|213953903|gb|EEB65231.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
Length = 356
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 165/290 (56%), Gaps = 6/290 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G AR+LCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 48 ISGAQARRLCPHLIFVKPRFERYKQISMQIRAIFDEYTDLVEPLSLDEAYLDVT-VNKKG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++ E GLT SAG++ N+ +AK+ SD +KPNGQ + + V F+
Sbjct: 107 NPSATLIAQEIRQRIFNEIGLTASAGISVNKFIAKIASDYHKPNGQTTI--TQAEVQDFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + + GI +++ +K ++ ++ + G+ +
Sbjct: 165 DKLDVRKFYGIGKVTAEKMYQL-GIFKGKDLREKSLAFLERNFGNSGHYYYELSRGIHRS 223
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ +E TF+ + + R+L IAE + ++K+ + G+T+TLK+K +
Sbjct: 224 EVQPFRIRKSVGAEETFAENLTSEVYMERELERIAEDVVRRLEKQQVAGKTITLKIKYSD 283
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
F ++TR+ TL+ +ISS E+IL H LL E L S+RL+G+ V+ N +
Sbjct: 284 FTIQTRSKTLKDFISSKEEILLHIKELLYQERLSESVRLLGISVSHLNNE 333
>gi|429755769|ref|ZP_19288401.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429172746|gb|EKY14286.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 353
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 8/291 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G ARKLCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 48 ISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+
Sbjct: 107 NPSATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE--AEVQDFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +RK GIGKVT + + GI ++ +K ++ ++ + G+ +
Sbjct: 165 DRLDVRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGHYYYELSRGIHRS 223
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF+ +T + +L R+L IAE + + K+ + G+T+TLK+K +
Sbjct: 224 EVQPFRIRKSVGAEETFAENLTSEVYML-RELDHIAEDVVRRLDKQQVAGKTVTLKIKYS 282
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 288
+F V+TR+ TL+ +IS+ +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 283 NFTVQTRSKTLKDFISNKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|157871750|ref|XP_001684424.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
gi|68127493|emb|CAJ05435.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
Length = 598
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 14/316 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPGFI +KLCPELI VP DF Y + + +YD F++ LDE +D+T+ +E
Sbjct: 194 MPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGLDELTMDVTKYLQEF 253
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMT 118
+S +IA + R V+ + LT S G+ P +LAK+ S++NKPNGQ + R V+
Sbjct: 254 PAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNGQHEITLLTREEVIN 313
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
++ +P+RKI GIG E L I+TC +L+ LL +F T +LSVGLGL
Sbjct: 314 YVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFREKTLAHYLSVGLGLA 372
Query: 179 ST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
T + + + R+S+ E +FS E L+RKL E + ++ L+ R +TL
Sbjct: 373 ETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV---RDHLQPRKMTL 429
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNE-DKV 290
LK +++ +VTL + + + L+ + LL+ L LRLIG+R+ +F + D
Sbjct: 430 VLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHYAELRLIGVRLQRFTDIDDD 489
Query: 291 RAPSDPTQKTLTNFMT 306
A + T+ LT +T
Sbjct: 490 HAGLNSTRDALTGALT 505
>gi|408371276|ref|ZP_11169044.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
gi|407743237|gb|EKF54816.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
Length = 367
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 167/300 (55%), Gaps = 9/300 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A++LCPELIFVP F +Y S R +F +Y SLDEAYLD+TE ++
Sbjct: 62 MSGVLAKRLCPELIFVPPRFDRYREISMKIRAIFLEYTDLVEPLSLDEAYLDVTE-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA ++R ++++ GL CSAG++ N+ +AK+ SD NKPNGQ + D V+ F+
Sbjct: 121 NPSATLIASQIRERIFQQTGLRCSAGISINKFVAKIASDYNKPNGQKTVEPDE--VIPFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+L IRK G+GKVT + + GI T ++ +K + + +V G+ ++
Sbjct: 179 EALDIRKFYGVGKVTAQKMYQL-GIFTGLDLKKKPIEFLNEHFGKSGSLYYNVVRGIHNS 237
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KS+ +ERTF+ + + +L ++ L ++K + G+T+TLK+K +
Sbjct: 238 PVKPDRVPKSVGAERTFTENLSSEVFMLERLEHLSVELEQRLRKNKVAGKTITLKIKYSD 297
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDPTQ 298
F ++TR+ TL YIS IL A+ LL E L S+RL+G+ + N D AP P Q
Sbjct: 298 FSLQTRSKTLDFYISDKSLILDTATELLYQEKLHNSVRLLGISLGNLNTD---APEIPVQ 354
>gi|344202523|ref|YP_004787666.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
gi|343954445|gb|AEM70244.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
Length = 366
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 166/290 (57%), Gaps = 10/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G IAR+ CPELIFV F +Y S R +F +Y SLDEAYLD+TE ++
Sbjct: 62 MAGAIARRNCPELIFVRPRFDRYKEISKQIRGIFFEYTDLVEPLSLDEAYLDVTE-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+E+R ++++ GLT SAG++ N+ +AKV SD NKPNGQ V P + V+ F
Sbjct: 121 NPSATLIAQEIRNKIFDKTGLTASAGISINKFIAKVASDYNKPNGQKTVNPEE---VIEF 177
Query: 120 ISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ +L IRK G+GKVT E + R GI T ++ QK + ++ +V G+
Sbjct: 178 LENLDIRKFYGVGKVTAEKMYR--LGIFTGFDLKQKSVDFLEKHFGKSGSYYYNVVRGIH 235
Query: 179 STNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
++ R KS+ +ERT F + + KL IA L +QK + G+T+TLK+K
Sbjct: 236 LSSVKPHRIPKSVGAERTFFENLSSEIFMLEKLENIASELEKRLQKSKIAGKTITLKIKY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN 286
+ F ++TR+ TL +I+S + IL+ A LL ++ L S+RL+G+ + N
Sbjct: 296 SDFTLQTRSKTLPYFIASKDLILETAKELLYQSSLENSVRLLGISLANLN 345
>gi|225012038|ref|ZP_03702475.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
gi|225003593|gb|EEG41566.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
Length = 366
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 166/296 (56%), Gaps = 12/296 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G IA++LCP LIF PT F +Y S++ R VF +Y SLDEA+LD++E
Sbjct: 65 LSGVIAKRLCPHLIFAPTRFDRYKEISEIVRSVFLEYTSLVEPLSLDEAFLDVSEYP--- 121
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +A+E+R ++ + GLT SAG++ N+ LAK+ SD NKPNGQ +P + V++F+
Sbjct: 122 --SATMVAQEIREKIFSKTGLTASAGISINKFLAKIASDWNKPNGQKTIPPEE--VLSFL 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+L ++K GIG T+ + + GI + ++ LQ + L F S +F V G+ +
Sbjct: 178 ENLDVKKFHGIGAKTKLKMYGL-GIYSGNDLKLQSAAFLEKHFGKSGIHYF-KVVRGIHT 235
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ +ERTF + + KL I+ +L +K + G+T+TLK+K +
Sbjct: 236 SEVKPHRIPKSLGAERTFETNLSSEVYIEEKLKLISALLEKRTKKNKVAGKTITLKIKYS 295
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAP 293
F +TR+ T Y+SS E I + + LL E L S+RLIG+ ++ N K P
Sbjct: 296 DFIQQTRSKTGTLYLSSKELIFEESKKLLYQEKLLNSVRLIGISLSNLNTSKKEIP 351
>gi|403376484|gb|EJY88222.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 1212
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 175/323 (54%), Gaps = 19/323 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK-YDPNFMAASLDEAYLDITEVCRE 59
MPGF+ +KLCP L+F+ + KY SD K + YD + LDEA LDIT+ ++
Sbjct: 594 MPGFMGKKLCPTLVFIRPNKDKYRKVSDTEFKAILREYDDKLESIGLDEANLDITDFLQK 653
Query: 60 RGI----SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 115
G+ I +AE++R + + +T S G+A N++LAK+CS++NKPNGQ L D
Sbjct: 654 NGMDCPEGRIFVAEKIREQIKTKMQMTSSVGIASNKMLAKICSELNKPNGQSYLAFDADK 713
Query: 116 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 175
+ F+ + +R + G+G+V E +L + INTC+E+L+K + + F+ + +F + +
Sbjct: 714 IEEFMRAKKVRDVPGVGRVHEQVLIGL-DINTCDEILKKAADIYINFTETAFEFLVKAAM 772
Query: 176 GLG--STNTPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G+ S + ++SIS ++F V K+ ++A L+ + + RTL+
Sbjct: 773 GISRCSHDDDSGNLAKRSISFSKSFKVISRFEQFKEKMDKLATNLAEKCNEMKILARTLS 832
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNEDKVR 291
++ KT F ++ R++T ++I +DI+++A+ LL A PV R++ L++ + R
Sbjct: 833 IEFKTEKFMLKQRSLTFNQHICHKDDIMRYANELLNAVWPVEPCRMMMLKLNNL---RNR 889
Query: 292 APSDPTQ------KTLTNFMTSG 308
D T+ K L FM G
Sbjct: 890 TEKDSTESLLKDVKNLQFFMGKG 912
>gi|399026065|ref|ZP_10728032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
gi|398076760|gb|EJL67810.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
Length = 364
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 169/292 (57%), Gaps = 14/292 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP LIFVP F +Y S R++F +Y SLDEAYLD+TE +E
Sbjct: 61 MPSKTAKEKCPHLIFVPPHFARYKEISRKIREIFYEYTDLVEPLSLDEAYLDVTENKKEI 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +IA E+R ++E+ GLT SAG++ N+ LAKV SDINKPNGQ + D+ + F+
Sbjct: 121 E-SANQIAREIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDK--IENFL 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
LP+ K G+G+VT + + + GI ++ L+K +L L ++F S ++ +V G+
Sbjct: 178 EELPVEKFYGVGRVTANKMFTL-GIFKGKD-LKKKTLQELVSLFGKS-GSYYYNVVRGIH 234
Query: 179 STNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
++ R +KS++ ERT F D+ + KL ++ L +QK + GR LTLK+K
Sbjct: 235 NSEVKPHRIQKSVAVERTFFEDLFDEQQINEKLESLSAELHQRLQKNNILGRALTLKIKY 294
Query: 238 ASFEVRTRAVTLQKYISSSED---ILKHASVLLKAELPVSLRLIGLRVTQFN 286
F + TR++T ++Y +S+E+ I K L + PV RL+GL ++ N
Sbjct: 295 KDFSLFTRSITKEEYFTSAEEYFGISKKLWELRPFDKPV--RLLGLSLSHLN 344
>gi|302409854|ref|XP_003002761.1| DNA polymerase kappa [Verticillium albo-atrum VaMs.102]
gi|261358794|gb|EEY21222.1| DNA polymerase kappa [Verticillium albo-atrum VaMs.102]
Length = 407
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 211/441 (47%), Gaps = 64/441 (14%)
Query: 71 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 130
+R ++E+ +T SAG+A N LAK+CS++NKPNGQ++LP+DR ++M F+ SLP RK+ G
Sbjct: 1 MRREIHEKTKITVSAGIAANAKLAKICSNMNKPNGQYLLPSDRASIMKFMGSLPPRKVNG 60
Query: 131 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN-TPQARF-R 188
+G+V E L ++ G+ TC E+ + L +F +F + LGLG T P + R
Sbjct: 61 VGRVLERQLTEI-GVTTCGEIYEYRQYLNQLFGQKAFEFLIHCYLGLGRTKIQPAEEYER 119
Query: 189 KSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 248
KS+ +E TF D L KL A+ L DM++ ++GRTL LK+K ++EV TR V
Sbjct: 120 KSVGTESTFHDMSDPTQLTEKLRWTADELEKDMKRAEVKGRTLVLKIKLHTYEVFTRQVV 179
Query: 249 LQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 304
QK I ++D+ H+ + L+ E+P + LRL+GLR+T K T+ F
Sbjct: 180 TQKSICLADDLFNHSLPILTKLQQEIPDMKLRLMGLRMTHLVSTK-------KPDTMAFF 232
Query: 305 MTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLND 364
G S+K D + GS D D E + V++ + +E
Sbjct: 233 ---GFRSRK---DNAATGSPSKSDA---DGEKLNTQGVTDDDGWE--------------- 268
Query: 365 ENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSN 424
+ E E +E +L E + + E S K+I P N + +
Sbjct: 269 -------QWPEEELFQLDE--ELQEQANTAAEEVEDSVSSPFRRHGKEILP-NPIDEDAP 318
Query: 425 QKDQFIWLDDYKCSLCGTEMPPSFIEER--QEHSDFHLAERLQKEESGSDLRILTHRERC 482
D +W C +CG P +ER EH D L+ + +E D+ L C
Sbjct: 319 VSDAELW----DCPICGRPQAP---DERTFNEHIDLCLSRQTIREAVQEDVAPLA--AAC 369
Query: 483 VRT-----QRDHIASHRKRKK 498
+R+ +R + + RKR +
Sbjct: 370 IRSSTPEPKRTKLGNDRKRGR 390
>gi|225010252|ref|ZP_03700724.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
gi|225005731|gb|EEG43681.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
Length = 365
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 170/299 (56%), Gaps = 8/299 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A +LCP+LIFVP F +Y S +F ++ SLDEAYLD+T ++
Sbjct: 62 MSGIMASRLCPQLIFVPPRFERYKEVSAQISTIFRQHTDLVEPLSLDEAYLDVTH-HKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA E+RT + + GL SAG++ N+ +AK+ SDINKPNGQ +P + V++F+
Sbjct: 121 NPSASLIASEIRTEILKLTGLHASAGISINKFVAKIASDINKPNGQKTIPPEE--VLSFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+L IRK GIGKVT + + GI T ++ L+ L F S F+ +V G+
Sbjct: 179 ENLDIRKFFGIGKVTADKMYGL-GIFTGADLKLKSEDFLETHFGKSGRYFYRAVR-GVHH 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R +KS+ +ERTF+ + L K+ +AE LS + + L G+T+TLKLK A
Sbjct: 237 SEVSPERIQKSVGAERTFNENISSEVFLEGKIIALAEELSKRLGRSKLSGKTITLKLKYA 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDP 296
F +TR+ TL +I++ + I+ A+ LL E L S+RL+G+ + + N +K A P
Sbjct: 297 DFNTQTRSKTLPYFIANKDLIIAAATELLYQEVLSNSVRLLGISMGKLNNEKKEAIKGP 355
>gi|270356843|gb|ACZ80632.1| putative DNA-directed polymerase kappa [Filobasidiella depauperata]
Length = 570
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 152/289 (52%), Gaps = 41/289 (14%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP +I T F Y S R++ +YD N M ASLDE YL
Sbjct: 149 MAGFIAKKLCPNIILTDTHFDLYIAASKSVREILEQYDENLMMASLDEGYL--------- 199
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAK---VCSDINKPNGQFVLPNDRMAVM 117
+ LR V +E +T SAG+APNR+LAK +CSD NKPNGQ+ + +R ++
Sbjct: 200 --------KHLRNQVEKETNMTISAGIAPNRMLAKMGKICSDKNKPNGQYEMNFERSKIV 251
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
F+ LP+RKI G G+VTE L + G+ +C ++ K + L + LG+
Sbjct: 252 RFMRDLPVRKIPGFGRVTERYL-ESLGVKSCGDIYDKRAELLVMNHWLGFRGLCRTYLGI 310
Query: 178 GSTN-TPQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N TP+ R RKS+ ERTF + + L+ I + L D+++
Sbjct: 311 ADNNVTPRKREERKSVGVERTFRNKTNDEDIMNTLSSIVDELERDLER------------ 358
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 284
+RTRA ++ K++SS++DIL A LL+ ELP+ +RL+G + Q
Sbjct: 359 ------LRTRAKSVSKFVSSAKDILPIAQDLLQRELPLCIRLLGFFLPQ 401
>gi|398018133|ref|XP_003862253.1| DNA polymerase kappa, putative [Leishmania donovani]
gi|322500482|emb|CBZ35559.1| DNA polymerase kappa, putative [Leishmania donovani]
Length = 598
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 169/316 (53%), Gaps = 14/316 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPGFI +KLCPELI VP DF Y + + +YD F++ LDE +D+T+ +E
Sbjct: 194 MPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGLDELTMDVTKYLQEF 253
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMT 118
+S +IA + R V+ + LT S G+ P +LAK+ S++NKPNGQ + R V+
Sbjct: 254 PAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNGQHEITLLTREEVIN 313
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
++ +P+RKI GIG E L I+TC +L+ LL +F T +LSVGLGL
Sbjct: 314 YVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFREKTLAHYLSVGLGLA 372
Query: 179 ST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
T + + + R+S+ E +FS E L+RKL E + ++ L+ R +TL
Sbjct: 373 ETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV---RDHLQPRKMTL 429
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNE-DKV 290
LK +++ +VTL + + + L+ + LL+ L RLIG+R+ +F + D
Sbjct: 430 VLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHYAEFRLIGVRLQRFTDTDDD 489
Query: 291 RAPSDPTQKTLTNFMT 306
A + T+ LT +T
Sbjct: 490 HAGLNSTRDALTGALT 505
>gi|146298645|ref|YP_001193236.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
gi|146153063|gb|ABQ03917.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
Length = 360
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 168/295 (56%), Gaps = 8/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G +A+K CPE+IFV F +Y S K+F +Y SLDEAYLD+T+ ++
Sbjct: 62 ISGVLAKKYCPEIIFVRPRFDRYKEISSKIHKIFHEYTDLVEPLSLDEAYLDVTQ-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +A+E+RT ++ E GLT SAG++ N+ +AK+ SDINKPNGQ + D ++ F+
Sbjct: 121 NPSASLLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDINKPNGQKTVNPDE--IIPFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
LPIRK G+GKVT + + GI T ++ K L F S A F+ SV G+ +
Sbjct: 179 EELPIRKFYGVGKVTTEKMYQL-GIFTGSDLKSKSLEFLEKHFGKSGA-FYYSVVRGIHN 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+++E TF V + + +L IA L +++ + G+T+TLK+K +
Sbjct: 237 SEVKPHRITKSVAAEHTFDVNLSSEIFMLEQLERIAVSLEKRLKRHNVSGKTVTLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRA 292
F +TR+ TL +IS I++ LL E + S+RL+G+ ++ N ++ +A
Sbjct: 297 DFTQQTRSKTLPYFISDKSLIMEIVEELLYQEKMKNSVRLLGISLSNLNTEEKKA 351
>gi|372223245|ref|ZP_09501666.1| DNA polymerase IV [Mesoflavibacter zeaxanthinifaciens S86]
Length = 365
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 171/292 (58%), Gaps = 10/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G++A+K CPELIFV F +Y S R+VF +Y SLDEAYLD+T+ ++
Sbjct: 62 MSGYLAQKNCPELIFVKPRFDRYKEISQQIRQVFFEYTDLVEPLSLDEAYLDVTQ-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+E+R + ++ GLT SAG++ N+ +AK+ SD NKPNGQ V P + V+ F
Sbjct: 121 NPSATLIAQEIRQKILDKTGLTASAGISINKFIAKIASDYNKPNGQKTVNPEE---VLEF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+S+L IRK G+GKVT + + GI T ++ +K L F S ++ +V G+
Sbjct: 178 LSALDIRKFYGVGKVTAEKMYQL-GIFTGADLKKKSLEFLNQEFGKSGQHYY-NVVRGIH 235
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R KS+ +ERTFS + + ++L IA+ L ++K L G+T+TLK+K
Sbjct: 236 LSTVKPSRTPKSVGAERTFSENLSSEIFMLQRLENIAQELEKRLKKSKLAGKTVTLKIKY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNED 288
+ F ++TR+ TL +I+ IL +A LL ++ L S+RL+G+ + N +
Sbjct: 296 SDFTLQTRSKTLPFFIADKSLILDNAKELLYQSPLENSVRLLGISLANLNTE 347
>gi|336172096|ref|YP_004579234.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
gi|334726668|gb|AEH00806.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
Length = 366
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 163/289 (56%), Gaps = 8/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G AR+LCP+LIFV F +Y S R +F Y SLDEAYLD+TE ++
Sbjct: 62 ISGVKARRLCPDLIFVKPRFDRYKEISSKIRAIFYDYTDLVEPLSLDEAYLDVTE-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IAEE+RT ++ E GLT SAG++ N+ +AKV SD NKPNGQ V P + V+ F
Sbjct: 121 NPSASLIAEEIRTRIFNEVGLTASAGISINKFIAKVASDYNKPNGQKTVNPEE---VLGF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +L IRK GIGKVT + GI T ++ K + ++ + G+ +
Sbjct: 178 LEALDIRKFYGIGKVTAEKMYQK-GIFTGTDLKSKSLEFLEQNFGKSGSYYYYIVRGIHN 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R RKS+++ERTFS + + KL IAE +S + + + G+T+TLK+K +
Sbjct: 237 SEVKPNRIRKSLAAERTFSENLSSEIFMLEKLEHIAEEVSKRLIRSKVAGKTVTLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 286
F ++TR+ TL +IS +L+ A LL E + S+RL+G+ ++ N
Sbjct: 297 DFTLQTRSKTLPYFISDKSVVLETAKELLYQEKMNNSVRLLGISLSNLN 345
>gi|325286065|ref|YP_004261855.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
gi|324321519|gb|ADY28984.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
Length = 365
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 10/309 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G++A++ CP+LIFVP F +Y S R +F Y SLDEAYLD+T V ++
Sbjct: 62 MSGYMAKRNCPDLIFVPPRFARYKEISQKIRAIFYDYTDLVEPLSLDEAYLDVT-VNKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S +A+E+R +Y E GLT SAG++ N+ +AKV SD NKPNGQ V P + V+ F
Sbjct: 121 NPSASLLAKEIRERIYNELGLTASAGISINKFIAKVASDYNKPNGQKTVNPEE---VLAF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ L IRK G+GKVT + V GI T ++ K L F S A ++ V G+
Sbjct: 178 LEELEIRKFYGVGKVTAEKMYKV-GIFTGLDLKNKSLEFLEKHFGKSGA-YYYHVVRGIH 235
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
++ R KS+ +ERTF+ + + +L IA L ++K + G+T+TLK+K
Sbjct: 236 NSPVKPNRIPKSVGAERTFNENLSSEIFMLERLENIANELERRLKKSKIAGKTITLKIKY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDP 296
+ F ++TR+ T+ +I+ + IL+ A LL E L S+RL+G+ + N + P
Sbjct: 296 SDFTLQTRSKTIPYFIADKDLILEIAKELLYQEKLENSVRLLGISLANLNTPDKKKPEQE 355
Query: 297 TQKTLTNFM 305
+ FM
Sbjct: 356 SISVQLKFM 364
>gi|86134767|ref|ZP_01053349.1| DNA polymerase IV [Polaribacter sp. MED152]
gi|85821630|gb|EAQ42777.1| DNA polymerase IV [Polaribacter sp. MED152]
Length = 360
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 169/293 (57%), Gaps = 12/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A++ CP +IFV +DF +Y S R++F +Y SLDEAYLD+T ++
Sbjct: 62 MSNVLAKQKCPHIIFVKSDFARYKELSAQIREIFFEYTDLVEPLSLDEAYLDVTN-NKKN 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S EIA E+R +Y++ GL SAG++ N+ +AKV SDINKPNGQ + + V+ F+
Sbjct: 121 NPSANEIAREIRQKIYDKTGLRASAGISINKFIAKVASDINKPNGQKTIHPEE--VIQFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
LP+ K G+GKVT + ++ GI + L+K SL L +F S ++ ++ G+
Sbjct: 179 EELPVNKFYGVGKVTAAKMYNL-GIFVGND-LKKRSLEELTQLFGKSGLHYY-NIVRGIH 235
Query: 179 STNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R RKS+ +ERTF +++ + +L KL +IA+ + M K +G+T+TLK+K
Sbjct: 236 KSEVKPNRIRKSVGAERTFRENISSEIYML-DKLNDIADEIEKRMHKSNTKGKTITLKIK 294
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
+ F +TR+ T+ ++IS ++ LL E L S+RL+GL + N +
Sbjct: 295 YSDFTQQTRSKTVGQFISKKKEFFPVVKELLYQEKLENSVRLLGLSFSNLNNN 347
>gi|401424998|ref|XP_003876984.1| putative DNA polymerase IV [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493228|emb|CBZ28513.1| putative DNA polymerase IV [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 598
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 168/316 (53%), Gaps = 14/316 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPGFI +KLCPELI VP DF Y + + +YD F++ LDE +D+T+ +E
Sbjct: 194 MPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGLDELTMDVTKYLQEF 253
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMT 118
+S +IA + R V+ + LT S G+ P +LAK+ S++NKPNGQ + R V+
Sbjct: 254 PAVSASDIAHDFRNEVFIKTQLTSSGGIGPTSILAKIASNVNKPNGQHEITLLTREEVIN 313
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
++ +P+RKI GIG E L I+TC +L+ LL +F T +LSVGLGL
Sbjct: 314 YVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFREKTLAHYLSVGLGLA 372
Query: 179 ST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
T + + + R+S+ E +FS E L+RKL E + ++ L+ R +TL
Sbjct: 373 ETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV---RDHLQPRKMTL 429
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNE-DKV 290
LK +++ +VTL + + + L+ + LL+ L RL+G+R+ +F + D
Sbjct: 430 VLKYRTYDTEQFSVTLSSHTNDLKVWLEASQKLLEPHLLHYAEFRLVGVRLQRFTDTDDD 489
Query: 291 RAPSDPTQKTLTNFMT 306
+ T+ LT +T
Sbjct: 490 HTGLNSTRDALTGALT 505
>gi|89889949|ref|ZP_01201460.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
gi|89518222|gb|EAS20878.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
Length = 361
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 164/293 (55%), Gaps = 12/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A+KLCP+LIFV F KY S R +F Y SLDEAYLD+TE +
Sbjct: 61 MPSITAKKLCPDLIFVKHRFDKYREVSSQIRDIFLDYTDLVEPLSLDEAYLDVTE-NKLN 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA ++R +YE GLT SAG++ N+ +AK+ SD NKPNGQ + + V+ F+
Sbjct: 120 YPSATVIAYDIRRRIYETTGLTASAGISINKFVAKIASDYNKPNGQKTITPEE--VIPFL 177
Query: 121 SSLPIRKIGGIGKVT--EHILRDVF-GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
L IRK GIGKVT + L+ +F G + E L+ L F S A ++ ++ G+
Sbjct: 178 EELEIRKFHGIGKVTAEKMYLQGIFTGAHLKERSLE---FLQEHFGKSGAHYY-NIVRGI 233
Query: 178 GSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R RKS+ +ERTFS + + +L +IAE + + K + G+T+TLK+K
Sbjct: 234 HHSPVKPDRIRKSLGAERTFSENISSEIFMKERLTQIAEEIEKRLAKNDVAGKTVTLKIK 293
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
+ F+ +TR+ TL +I + + IL A L++ E S+RL+G+ ++ N D
Sbjct: 294 YSDFKTQTRSKTLPHFIRTKDLILATAIELMEQEGFRESVRLLGITLSNLNTD 346
>gi|146092011|ref|XP_001470183.1| putative DNA polymerase IV [Leishmania infantum JPCM5]
gi|134084977|emb|CAM69375.1| putative DNA polymerase IV [Leishmania infantum JPCM5]
Length = 598
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 168/316 (53%), Gaps = 14/316 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE- 59
MPGFI +KLCPELI VP DF Y + + +YD F++ LDE +D+T+ +E
Sbjct: 194 MPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGLDELTMDVTKYLQEF 253
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMT 118
+S +IA + R V+ + LT S G+ P +LAK+ S++NKPNGQ + R V+
Sbjct: 254 PAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNGQHEITLLTREEVIN 313
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
++ +P+RKI GIG E L I+TC +L+ LL +F T +LSVGLGL
Sbjct: 314 YVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFREKTLAHYLSVGLGLA 372
Query: 179 ST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
T + + + R+S+ E +FS E L+RKL E + ++ L+ R +TL
Sbjct: 373 ETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV---RDHLQPRKMTL 429
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNE-DKV 290
LK +++ +VTL + + + L+ + LL+ L RLIG+R+ +F + D
Sbjct: 430 VLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHYAEFRLIGVRLQRFTDTDDD 489
Query: 291 RAPSDPTQKTLTNFMT 306
A + + LT +T
Sbjct: 490 HAGLNSARDALTGALT 505
>gi|326335225|ref|ZP_08201421.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692633|gb|EGD34576.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 367
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 10/295 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G IAR+LCP LIFV F +Y S R +F +Y SLDEAYLD+T ++
Sbjct: 57 MSGVIARRLCPTLIFVKPRFERYKEISSRIRNIFYEYTDLVEPLSLDEAYLDVT-TNKKN 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAE++R+ ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +P + V++F+
Sbjct: 116 LSSATLIAEQIRSKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPSK--VLSFL 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L ++K GIGKVT + GI T ++ K + ++ ++F + G+ +
Sbjct: 174 EGLDVKKFYGIGKVTAEKMYQK-GIFTGADLRAKSLEELQSYFGNSGEYFYQIARGIHLS 232
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KSI E TF + + L +++E +S + K+ L +T+TLKLK +
Sbjct: 233 PVQPFRLIKSIGVEHTFEKNISSEIFMTEPLQQLSEEVSLRLSKKKLLAKTVTLKLKYSD 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN----EDK 289
F+++TR+ T+ ++I S I LL E L S+RL+G+ ++ FN EDK
Sbjct: 293 FKIQTRSRTIPEFIGDSPTIYHIVKELLYQEKLRESIRLLGVSLSNFNYPIKEDK 347
>gi|85374810|ref|YP_458872.1| DNA polymerase IV [Erythrobacter litoralis HTCC2594]
gi|84787893|gb|ABC64075.1| putative DNA damage-inducible protein [Erythrobacter litoralis
HTCC2594]
Length = 382
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 160/294 (54%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV F Y S R++F +Y P+ SLDEAYLD+T+ +
Sbjct: 78 MPSVTAKRLCPDLIFVKHRFEAYREASARIREIFNRYTPHVEPLSLDEAYLDVTDDLQAV 137
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G S A+ +R ++ EE GLT SAGV+ N+ LAK+ SD NKP+G V+ P + A F
Sbjct: 138 G-SATGTAQAIRKAIREETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRPGEGAA---F 193
Query: 120 ISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ SLPIR+ G+G K E + R GI+T ++ K S D+ G+
Sbjct: 194 VQSLPIRRFHGVGPKGAEKMAR--LGIDTGADLAGKDLAWLRQNFGSFGDYLYRAARGID 251
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ ERTFS + + R+ L I ++ +++ RGRT+TLK+K
Sbjct: 252 LRPIRTNRSRKSVGGERTFSQDQHEPDELRETLERIIAIVWERIERSKARGRTITLKMKY 311
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNEDK 289
F TRA +L Y+S ++ A LL+A+LP+ L RL+GL ++ D+
Sbjct: 312 NDFRTITRAQSLPHYVSGQDEFASVARDLLEAQLPLPLPIRLMGLTLSNLERDE 365
>gi|340621022|ref|YP_004739473.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
gi|339901287|gb|AEK22366.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
Length = 370
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 162/290 (55%), Gaps = 10/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A+K CPELIF+P F +Y S R++F +Y SLDEAYLD+T ++
Sbjct: 64 MSGVVAKKRCPELIFMPPRFERYRQISQQIREIFYQYTDLVEPLSLDEAYLDVTH-NKKN 122
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA E+R +YE+ GLT SAG++ N+ +AK+ SD NKPNGQ + D V F+
Sbjct: 123 CPSATLIATEIRQKIYEKTGLTASAGISINKFVAKIASDFNKPNGQKTVSFDE--VQDFL 180
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L +++ GIGKVT + + GI T +++ K + A ++ + G+ +
Sbjct: 181 DVLDVKRFYGIGKVTTEKMY-LKGIFTGKDLRNKSLSFLEEHFGNHAIYYYQLARGIHLS 239
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KS+ +ERTFS +T + + + L IA+ L M K+G+ G+T+TLK+K +
Sbjct: 240 EVKPLRLPKSVGAERTFSKNITSE-VFMEKDLYAIAQELHERMAKKGVSGKTITLKIKYS 298
Query: 239 SFEVRTRAVTLQKYISSSEDILKHAS--VLLKAELPVSLRLIGLRVTQFN 286
F V+TR+ T I+ +I H S +L + L S+RL+G+ ++ N
Sbjct: 299 DFSVQTRSKTFPYQIAQKVEIF-HLSKELLYQQPLENSVRLLGISISNLN 347
>gi|375012202|ref|YP_004989190.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
gi|359348126|gb|AEV32545.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
Length = 361
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 165/294 (56%), Gaps = 12/294 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M IA + CP +IFV F KY S R++F +Y SLDEAYLD+TE ++
Sbjct: 62 MASSIAYRKCPHIIFVKPHFEKYKEVSKQIREIFFEYTDLVEPLSLDEAYLDVTE--NKK 119
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMT 118
GI+ IA+E+R ++EE L+ SAG++ N+ +AKV SDINKPNGQ ++P+D V+
Sbjct: 120 GIATATRIAKEIRQRIWEETQLSASAGISINKFVAKVASDINKPNGQKTIMPDD---VIP 176
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGL 177
F+ +LPI+K GIG+ T ++ + GI+ ++ Q LL F S ++ ++ GL
Sbjct: 177 FLENLPIKKFYGIGEKTAEKMKKL-GIHFGRDLKQWDLPLLVREFGKSGTHYY-NIVRGL 234
Query: 178 GSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R RKSI +ERT F ++ L +L +I +L ++ G+T+TLKLK
Sbjct: 235 QKSTVKPDRIRKSIGAERTFFDDIHAESDLKEELEKIMTILHKRIESSEASGKTVTLKLK 294
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQFNEDK 289
+ FE TR+ T YI+S E+I LL P +RL+G+ ++ D+
Sbjct: 295 SFDFEQHTRSFTFDHYINSQEEIFDKIIQLLYQPFPEKPVRLLGITLSNLKNDE 348
>gi|407842871|gb|EKG01200.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 514
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 158/294 (53%), Gaps = 9/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I KLCP L+ VPTDF Y + + R + YDPNF + LDE +++T ++
Sbjct: 166 MPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQH 225
Query: 61 -GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
G++ ++A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L R VM
Sbjct: 226 PGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELRLRTRQDVME 285
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ LP+R + GIG V + +LR V GI TC +L+K LLC +F T F+LS GLG+
Sbjct: 286 FMKDLPVRTVPGIGPVQDAVLR-VLGIRTCGCVLRKKGLLCFLFPEKTFRFYLSAGLGVV 344
Query: 179 STNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+N R +K++ E TF + +A L + + E+ + + + + +TL
Sbjct: 345 RSNADLMRSDGTQKTMGHEITFKRRLKSEAELRQIVLEVLVAVHNTLLLRRVAAQRVTLL 404
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+K +FE ++TL + + +L+ LL+ L RL+G+R+ +
Sbjct: 405 MKRRTFENHQFSLTLGEATNDFAALLEATRKLLQPHLASFDKFRLVGVRLGKLQ 458
>gi|71411339|ref|XP_807923.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70872023|gb|EAN86072.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 514
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 167/322 (51%), Gaps = 21/322 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I KLCP L+ VPTDF Y + + R + YDPNF + LDE +++T ++
Sbjct: 166 MPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQH 225
Query: 61 -GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
G++ ++A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L R V+
Sbjct: 226 PGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELRLRTRQDVVE 285
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ LP+R + GIG V + +LR V GI TC ML+K LLC +F T F+LS GLG+
Sbjct: 286 FMKDLPVRAVPGIGPVQDAVLR-VLGIRTCGCMLRKKGLLCFLFPEKTFRFYLSAGLGVV 344
Query: 179 STNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+N + R +K++ E TF + +A L + + E+ + + + + +TL
Sbjct: 345 RSNADRMRSDGTQKTVGHEITFKRRLKSEAELKQIVLEVLVAVHNTLLLRRVAAQRVTLL 404
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN------ 286
+K +FE ++TL + + + + LL+ L + RL+G+R+ +
Sbjct: 405 MKRRTFENHQFSLTLGEATNDFAALREATRKLLQPHLASFENFRLVGVRLGKLQSTSRKK 464
Query: 287 ------EDKVRAPSDPTQKTLT 302
E K R P+ T L+
Sbjct: 465 LISGVEERKGRPPARITASVLS 486
>gi|395802471|ref|ZP_10481724.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
gi|395435712|gb|EJG01653.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
Length = 360
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 166/295 (56%), Gaps = 8/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G +A+K CPE+IFV F +Y S K+F +Y SLDEAYLD+T+ ++
Sbjct: 62 ISGVLAKKYCPEIIFVRPRFDRYKEISSKIHKIFHEYTDLVEPLSLDEAYLDVTK-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +A+E+RT ++ E GLT SAG++ N+ +AK+ SD NKPNGQ + D V F+
Sbjct: 121 NPSASLLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDE--VEAFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
LPIRK G+GKVT + + GI T ++ K L F S A F+ V G+ +
Sbjct: 179 EDLPIRKFYGVGKVTTEKMYQL-GIFTGTDLKSKSLEFLEKHFGKSGA-FYYHVVRGIHN 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ +R KS+++E TF V + + +L IA L +++ + G+T+TLK+K +
Sbjct: 237 SEVKSSRIAKSVAAEHTFDVNLSSEIFMMEQLERIASSLEKRLKRYNVSGKTITLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRA 292
F +TR+ TL +IS I+++ LL E + S+RL+G+ ++ N + +A
Sbjct: 297 DFSQQTRSKTLPYFISDKSLIMENVEELLYQEKMKDSVRLLGISLSNLNTEVKKA 351
>gi|421854046|ref|ZP_16286683.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371477685|dbj|GAB31886.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 359
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP LIFVP F Y S +F +Y P SLDEAYLD+T R
Sbjct: 60 MPSVQAQRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYLDVTHPLLPR 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P +R F+
Sbjct: 120 P-SATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGE--DFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
+SLP+ G+G T +R GI+T + L++ SL L F + A ++ G+ G
Sbjct: 177 ASLPVNAFHGVGPATARRMR-TLGIHTGAD-LRRFSLDILRQHFGKAAAFYY---GIARG 231
Query: 179 STNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ P R RKS+ E TF A L+ L E+A + A QK L GRT+TLKL
Sbjct: 232 KDDRPVEPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWAGCQKRNLTGRTITLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 283
+ F+ TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 292 RYTDFDQCTRSLSLADPVQDEEILAEMACRLLAPLLPVRAPVRLLGITLS 341
>gi|347535095|ref|YP_004842520.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
gi|345528253|emb|CCB68283.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
Length = 361
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 162/294 (55%), Gaps = 8/294 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G +A+K CP+LIFV F +YT S R +F +Y SLDEAYLD+T+ ++
Sbjct: 62 LSGVLAKKYCPDLIFVKPRFDRYTEISKKIRSIFYEYTDLVEPLSLDEAYLDVTQ-NKKN 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA E+R ++ E GLT SAG++ N+ +AK+ SD NKPNGQ V PN+ V+ F
Sbjct: 121 MSSATMIAAEIRQKIFIELGLTASAGISINKFVAKIASDYNKPNGQKTVAPNE---VLLF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LPI+K G+GKVT + + GI T ++ K + F+ V G+ +
Sbjct: 178 LEQLPIKKFYGVGKVTTEKMYQL-GIFTGLDLKSKSLDFLEKHFGKSGTFYYHVVRGVHN 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KS+++E TF + + + KL++IA L +QK G+T+TLK+K +
Sbjct: 237 GEVKANRIAKSVAAEHTFDINLTSEIFMLEKLSKIANELERRLQKHQKAGKTVTLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVR 291
F +TR+ TL +IS + + A LL E L S+RL+G+ ++ N + +
Sbjct: 297 DFTQQTRSKTLPYFISDKSLLFEFAKELLYQEKLKNSVRLLGISLSNLNTETTK 350
>gi|312069855|ref|XP_003137876.1| hypothetical protein LOAG_02290 [Loa loa]
Length = 650
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 173/359 (48%), Gaps = 96/359 (26%)
Query: 4 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT--------- 54
F +KLCP L + F KY S + RK+F YDP+F A LDEAY+++T
Sbjct: 144 FYCKKLCPHLKIISGSFEKYREASSVARKIFRDYDPDFHADGLDEAYINLTTYIQNRFLT 203
Query: 55 ------------------------------------EVC----------RERGISGI--- 65
E+C R+R G+
Sbjct: 204 GSAEHERIRYMGECVCRLPLITENEMYHLVSAEITEEICTKCKKLRKCVRDRITFGVDVD 263
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
EI E+R V + GLTCSAG+APN LLAKVCS+INKPNGQ+ L N+R AV+ F+ LPI
Sbjct: 264 EIVHEIRFRVEQAVGLTCSAGIAPNSLLAKVCSNINKPNGQYRLLNEREAVLNFLKDLPI 323
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
RKI GIG VTE +L+ + G+ C ++ ++ ++ +F+ + ++FL + G+ T
Sbjct: 324 RKISGIGPVTEAVLKGI-GLEKCGDLYEQRGIISLLFTQRSCEYFLRIARGISHT----- 377
Query: 186 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 245
+S+ +E S+ D + G GRT+T+K+K ++F+V TR
Sbjct: 378 --LESLCNELIDSL-------------------PDHRVRG--GRTVTVKMKFSTFDVITR 414
Query: 246 AVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQ--FNEDKVRAPSDP 296
++ IS + + S ++ E+ LRL+G+R+ F +K+ PS+P
Sbjct: 415 CCSVDYMISDVDRLFALCSKFVRREMHNDHGSDKYLRLLGVRLAHLVFENEKIE-PSNP 472
>gi|71415114|ref|XP_809635.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70874047|gb|EAN87784.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 514
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 164/322 (50%), Gaps = 21/322 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I KLCP L+ VPTDF Y + + R + YDPNF + LDE +++T ++
Sbjct: 166 MPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQH 225
Query: 61 -GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
G++ ++A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L R VM
Sbjct: 226 PGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELRLRTRQDVME 285
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ LP+R + GIG V + ILR V GI TC ML+K LLC +F T F+LS GLG+
Sbjct: 286 FMKDLPVRTVPGIGPVQDAILR-VLGIRTCGCMLRKKGLLCFLFPEKTFRFYLSAGLGVV 344
Query: 179 STNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+N R +K + E TF + +A L + + E+ + + + + +TL
Sbjct: 345 RSNADLMRSDGTQKKMGHEITFKRRLKSEAELKQIVLEVLVAVHNTLLLRRVAAQRVTLL 404
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN------ 286
+K +FE ++TL + + + + LL+ L RL+G+R+ +
Sbjct: 405 MKRRTFENHQFSLTLGEATNDFAALREATRKLLQPHLTSFDKFRLVGVRLGKLQSTSCKK 464
Query: 287 ------EDKVRAPSDPTQKTLT 302
E K R P+ T L+
Sbjct: 465 LISGVEERKGRPPARITASVLS 486
>gi|381186729|ref|ZP_09894299.1| DNA polymerase IV [Flavobacterium frigoris PS1]
gi|379651573|gb|EIA10138.1| DNA polymerase IV [Flavobacterium frigoris PS1]
Length = 360
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 161/290 (55%), Gaps = 6/290 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G +A+K CPELIFV F +Y S K+F +Y SLDEAYLD+T+ +
Sbjct: 62 ISGIMAKKYCPELIFVKPRFDRYKEISTKIHKIFHEYTDLVEPLSLDEAYLDVTQNKKGN 121
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+G+ +AEE+R +++E GLT SAG++ N+ +AK+ SD NKPNGQ + D V F+
Sbjct: 122 PSAGL-LAEEIRARIFKEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPDE--VNAFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK G+GKVT + + G+ T ++ K + +F+ +V G+ ++
Sbjct: 179 EELPIRKFYGVGKVTTEKMYQL-GVFTGLDLKSKSVEFLEKHFGKSGNFYFNVVRGIHNS 237
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KS+++E TF V + + KL IA L + K + G+T+TLK+K +
Sbjct: 238 EVKSDRITKSVAAEHTFDVNLSSEIFMLEKLEGIAIALERRLNKHKVAGKTITLKIKYSD 297
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
F +TR+ T+ +IS IL+ LL E + S+RL+G+ ++ N +
Sbjct: 298 FTQQTRSKTVPYFISDKGLILEIVKELLYQERMKDSVRLLGISLSNLNTE 347
>gi|294901592|ref|XP_002777428.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
gi|239885064|gb|EER09244.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
Length = 496
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 135/417 (32%), Positives = 202/417 (48%), Gaps = 64/417 (15%)
Query: 1 MPGFIARKLC----PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV 56
MPGFIAR+LC EL F P D +Y S + + Y P M SLDEAY+DIT
Sbjct: 64 MPGFIARELCRRQGVELRFKPVDMPRYQAASKIFKDTVSLYGPMKML-SLDEAYIDITAK 122
Query: 57 CRERG-----ISGIEIAEELRTSVYEE-----AGLTCSAGVAPNRL-LAKVCSDINKPNG 105
E IS +E A L + + EE +GLTCSAG+A LAK+ SD+NKPNG
Sbjct: 123 VAEAAMVDESISEVEAASLLVSRMREEVCENSSGLTCSAGIARGCFRLAKMASDVNKPNG 182
Query: 106 QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHS 165
QF++P ++ ++ S+PIRK+ G+G+V+E L GI+ +++ K + L S S
Sbjct: 183 QFMVPTTTQGMLEWLHSMPIRKLHGVGRVSERELSAGLGIHKVGDIIIKAAELLHAMSSS 242
Query: 166 TADFFLSVGLGLGSTNTPQARFR---KSISSERTFSVTEDKALLYRKLAEIAEMLSADM- 221
+ + +G+ A KSIS ER+ S + + Y L E+ E L + +
Sbjct: 243 GGHWLIDAAMGVADMEDVTAAAESGPKSISQERSLSTAKSGSAAY--LHEVLEELCSQVM 300
Query: 222 ----QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVS 274
+KE GR +T+KLKT ++V+ ++ TL++ + S + AS L+ A L
Sbjct: 301 ELCAEKEQY-GRCVTVKLKTFEWDVKQKSNTLKREVRSGRLLYSAASELMSTALATLKKP 359
Query: 275 LRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDK 334
+RL+G+RV+ F + P Q TL +F+ + AS V D+C+
Sbjct: 360 IRLLGVRVSSF---QTAVPQG--QSTLGDFLAAHKASSSRVA---------VDECIT--- 402
Query: 335 ETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISE--VEKIHENEVSQLLE 389
++E G V N C+F NK ++ E HEN V + E
Sbjct: 403 ----------IESHEHGGIV-----EAWNCTVCTFLNKATDRRCEMCHENRVGPVAE 444
>gi|374599088|ref|ZP_09672090.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|423324227|ref|ZP_17302068.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
gi|373910558|gb|EHQ42407.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|404608618|gb|EKB08077.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
Length = 357
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 163/295 (55%), Gaps = 12/295 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A+K CP LIFVP F +Y S R+VF +Y +LDEA+LD+TE +
Sbjct: 57 MSGILAKKKCPHLIFVPPRFDRYKEISRQIRQVFHEYTDLVEPLALDEAFLDVTE-NKIG 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++E LT SAG++ N+ LAKV SD NKPNGQ + + V F+
Sbjct: 116 CPSATLIAQEIRQKIFERTQLTASAGISINKFLAKVASDYNKPNGQKTINPEE--VEAFL 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
+L I+K GIGK T + FGI T ++ K L F + ++ V G
Sbjct: 174 EALEIKKFFGIGKKTADRMYH-FGIFTGRDLKAKSIDFLEEHFGKAGKAYYYIV---RGI 229
Query: 180 TNTPQA--RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
N+P + R KS+ +ERTF + L KLA I E LS ++K+GL G+T+TLK+K
Sbjct: 230 HNSPVSPDRLTKSVGTERTFDENLSSEVYLENKLAHIVEELSLRLRKQGLAGKTVTLKIK 289
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKV 290
A F +TR+ T +I+ + IL A LL E L S+RLIG+ ++ N KV
Sbjct: 290 YADFVQQTRSTTFPYFIADAGIILDCAKELLYQEKLQNSVRLIGVSLSNLNNIKV 344
>gi|407842323|gb|EKG01063.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 366
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 158/294 (53%), Gaps = 9/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I KLCP L+ VPTDF Y + + R + YDPNF + LDE +++T ++
Sbjct: 18 MPGYIGVKLCPSLVIVPTDFDAYHAEATVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQH 77
Query: 61 -GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
G++ ++A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L R VM
Sbjct: 78 PGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELRLRTRQDVME 137
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ LP+R + GIG V + +LR V GI TC +L+K LLC +F T F+LS GLG+
Sbjct: 138 FMKDLPVRTVPGIGPVRDAVLR-VLGIRTCGCVLRKKGLLCFLFPEKTFRFYLSAGLGVV 196
Query: 179 STNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+N R +K++ E TF + +A L + + E+ + + + + +TL
Sbjct: 197 RSNADLMRSDGTQKTMGHEITFKRRLKSEAELRQIVLEVLVAVHNTLLLRRVAAQRVTLL 256
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+K +FE ++TL + + +L+ LL+ L RL+G+R+ +
Sbjct: 257 MKRRTFENHQFSLTLGEATNDFAALLEATRKLLQPHLASFDKFRLVGVRLGKLQ 310
>gi|427409478|ref|ZP_18899680.1| hypothetical protein HMPREF9718_02154 [Sphingobium yanoikuyae ATCC
51230]
gi|425711611|gb|EKU74626.1| hypothetical protein HMPREF9718_02154 [Sphingobium yanoikuyae ATCC
51230]
Length = 365
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 162/287 (56%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+LCPEL+FV F Y S R +F ++ SLDEAYLD+T+ +
Sbjct: 63 MPGARARRLCPELLFVKPRFEVYRSVSAQIRAIFARFTDMIQPLSLDEAYLDVTQ--NKP 120
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S ++A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ A F
Sbjct: 121 GIASATQVAQEIRRLIQEETGLTASAGVSYNKLIAKLASDQNKPDGLCVVRPTEGA--DF 178
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
++ +P+R+I GIG VT + + GI T ++ + S+A F+ G
Sbjct: 179 MARMPVRRIHGIGPVTAERMHKL-GIETGADLRDRDMPFLKTHFGSSALFYYRAARGEDD 237
Query: 180 TNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ + RKS+S E TF + ++ALL R++ IA+ L A ++K GRT+ LK+K
Sbjct: 238 RPVHERQGRKSVSVEDTFFEDLVAEEALL-REIERIAQSLWARIEKAQAYGRTVVLKVKF 296
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRV 282
A F + TR+ + + S E ++ LLKA+LP+ + RL+GL +
Sbjct: 297 ADFRIITRSRSFAAPVRSVEQLVDAGRALLKAQLPLRMGARLLGLGI 343
>gi|409122245|ref|ZP_11221640.1| DNA polymerase IV 2 [Gillisia sp. CBA3202]
Length = 366
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 165/295 (55%), Gaps = 14/295 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M IA++ CP LIFV F +Y S R +F +Y SLDEAYLD+TE ++
Sbjct: 62 MSSVIAKRNCPNLIFVKARFDRYKEISSQIRAIFLEYTDLVEPLSLDEAYLDVTE--NKK 119
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMT 118
GI S IA+E+R + E+ GL SAG++ N+ +AKV SDINKPNGQ V P + V
Sbjct: 120 GIPSATLIAQEIREKIKEKTGLNASAGISINKFIAKVASDINKPNGQKTVNPEE---VEE 176
Query: 119 FISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLG 176
F+ L IRK G+GKVT E + R GI ++ K L F S ++ +V G
Sbjct: 177 FLEQLQIRKFYGVGKVTAEKMYR--LGIFKGIQLKDKSEEFLTENFGKS-GKYYYNVVRG 233
Query: 177 LGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ ++ R RKS+ +ERTFS + + +L IAE + ++ + G+T+TLK+
Sbjct: 234 IHNSEVKADRIRKSLGAERTFSENIASEIFMMERLENIAEEIERRLKGSKVAGKTVTLKI 293
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFNEDK 289
K + F ++TR+ TL YI+S IL A +L + ++ S+RL+G+ ++ N K
Sbjct: 294 KYSDFTLQTRSKTLPYYIASKAVILDTAKELLFQEKMKNSVRLLGITLSNLNTGK 348
>gi|421850035|ref|ZP_16283004.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
gi|371459135|dbj|GAB28207.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
Length = 360
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 156/290 (53%), Gaps = 15/290 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP LIFVP F Y S +F +Y P SLDEAYLD+T R
Sbjct: 61 MPSVQAQRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYLDVTHPLLPR 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P +R F+
Sbjct: 121 P-SATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGE--DFV 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
+SLP+ G+G T + GI+T + L++ SL L F + A ++ G+ G
Sbjct: 178 ASLPVNAFHGVGPATARRM-HTLGIHTGAD-LRRFSLDILRQHFGKAAAFYY---GIARG 232
Query: 179 STNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ P R RKS+ E TF A L+ L E+A + A QK L GRT+TLKL
Sbjct: 233 KDDRPVEPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWAGCQKRNLTGRTITLKL 292
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 283
+ F+ TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 293 RYTDFDQCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRLLGITLS 342
>gi|381199359|ref|ZP_09906509.1| DNA polymerase IV [Sphingobium yanoikuyae XLDN2-5]
Length = 365
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 163/287 (56%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+LCPEL+FV F Y S R +F ++ SLDEAYLD+T+ +
Sbjct: 63 MPGARARRLCPELLFVKPRFEVYRSVSAQIRVIFARFTDMIQPLSLDEAYLDVTQ--NKP 120
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S ++A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ A F
Sbjct: 121 GIASATQVAQEIRRLIQEETGLTASAGVSYNKLIAKLASDQNKPDGLCVVRPAEGA--DF 178
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
++ +P+R+I GIG VT + + GI T ++ + S+A F+ G
Sbjct: 179 MARMPVRRIHGIGPVTAERMHKL-GIETGADLRDRDLPFLQTHFGSSALFYYRAARGEDD 237
Query: 180 TNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ + RKS+S E TF + ++ALL R++ IA+ L A ++K GRT+ LK+K
Sbjct: 238 RPVHERQERKSVSVEDTFFEDLVAEEALL-REIERIAQSLWARIEKAQAYGRTVVLKVKF 296
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRV 282
A F + TR+ + + S E +++ LLKA+LP+ + RL+GL V
Sbjct: 297 ADFRIITRSRSFAAPVRSVEQLVEAGRALLKAQLPLRMGARLLGLGV 343
>gi|258541348|ref|YP_003186781.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|384041269|ref|YP_005480013.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
gi|384049784|ref|YP_005476847.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|384052894|ref|YP_005485988.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|384056126|ref|YP_005488793.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|384058767|ref|YP_005497895.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|384062061|ref|YP_005482703.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|384118137|ref|YP_005500761.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632426|dbj|BAH98401.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|256635483|dbj|BAI01452.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|256638538|dbj|BAI04500.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|256641592|dbj|BAI07547.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|256644647|dbj|BAI10595.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|256647702|dbj|BAI13643.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|256650755|dbj|BAI16689.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653746|dbj|BAI19673.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
Length = 359
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 156/290 (53%), Gaps = 15/290 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP LIFVP F Y S +F +Y P SLDEAYLD+T R
Sbjct: 60 MPSVQAQRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYLDVTHPLLPR 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P +R F+
Sbjct: 120 P-SATAIAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGE--DFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
+SLP+ G+G T + GI+T + L++ SL L F + A ++ G+ G
Sbjct: 177 ASLPVNAFHGVGPATARRM-HTLGIHTGAD-LRRFSLDILRQHFGKAAAFYY---GIARG 231
Query: 179 STNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ P R RKS+ E TF A L+ L E+A + A QK L GRT+TLKL
Sbjct: 232 KDDRPVEPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWAGCQKRNLTGRTITLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 283
+ F+ TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 292 RYTDFDQCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRLLGITLS 341
>gi|340617508|ref|YP_004735961.1| DNA polymerase IV [Zobellia galactanivorans]
gi|339732305|emb|CAZ95573.1| DNA polymerase IV [Zobellia galactanivorans]
Length = 366
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 167/298 (56%), Gaps = 8/298 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A++ CP LIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 62 MSSVLAQRNCPGLIFVKPRFERYKEISHQIRNIFYEYTDLVEPLSLDEAYLDVT-VNKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R +Y+ GL SAG++ N+ +AKV SDINKPNGQ + + +++ F+
Sbjct: 121 NPSASLIAKEIRQKIYDTIGLNASAGISINKFIAKVASDINKPNGQKTVNPEEVSL--FL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
L IRK G+GKVT + + GI T +++ L+ L F + ++ +V G+ +
Sbjct: 179 EELEIRKFYGVGKVTAEKMYKL-GIFTGKDLKLKTLEFLEGNFGKN-GSYYYNVVRGIHT 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ +ERTF+ + + +L IAE L ++K + G+T+TLK+K +
Sbjct: 237 SPVKPHRIPKSVGAERTFNENLSSEIFMLERLDHIAEELEKRLKKANIAGKTVTLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSD 295
F + TR+ TL YISS IL+ A LL E L S+RL+G+ + N +K +D
Sbjct: 297 DFTLNTRSKTLAYYISSKSLILETAKELLYQEKLQNSVRLLGISLANLNTEKKEKTTD 354
>gi|169596118|ref|XP_001791483.1| hypothetical protein SNOG_00811 [Phaeosphaeria nodorum SN15]
gi|160701232|gb|EAT92306.2| hypothetical protein SNOG_00811 [Phaeosphaeria nodorum SN15]
Length = 407
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 7/226 (3%)
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E +LR V+E A +T SAG+A N LAK+CS+ NKPNGQF LP+DR +M F+ ++P
Sbjct: 5 EAVSQLRADVHERAKITVSAGIAANAKLAKICSNKNKPNGQFFLPSDRQTIMEFMKTMPT 64
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
RK+ GIG+V E L D G+ TC ++ + L +F F + LGLG T +A
Sbjct: 65 RKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLPKLFGQKAFQFLMQCYLGLGRTKIQRA 123
Query: 186 R--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
RKS+ +E TF + L KL IAE L D+++ +GRTL +K+K ++EV
Sbjct: 124 EDYERKSVGTETTFKEMQSPDALRDKLRYIAEELEGDLKRTEYKGRTLCIKIKLHTYEVH 183
Query: 244 TRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVTQF 285
TR +T + ++D+ K+ +L+ E+P + LRL+GLR T
Sbjct: 184 TRQMTPPFAVHRADDLYKYGLPMLEKLMKEIPNMRLRLMGLRATHL 229
>gi|228472365|ref|ZP_04057130.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
gi|228276233|gb|EEK14968.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
Length = 367
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 165/289 (57%), Gaps = 8/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A++LCP LIFV F +Y S R +F +Y SLDEAYLD+T ++
Sbjct: 57 MAGAMAKQLCPSLIFVKPRFDRYREVSMQIRAIFHEYTDLVEPLSLDEAYLDVTTNKKDL 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+++R ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +P ++ F+
Sbjct: 117 P-SATLIAQQIRAKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPQE--ILDFL 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ L I+K GIGKVT + GI T ++ K + + ++F + G+ +
Sbjct: 174 APLDIKKFYGIGKVTAQKMYQK-GIFTGADLRAKSLEELQTYFGNNGEYFYQIARGIHLS 232
Query: 181 NTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKSI E TF ++T ++ L + L E+ E ++ ++++ L +T+TLKLK +
Sbjct: 233 AVQPFRLRKSIGVEHTFETNITSER-FLEKPLKELCEEVALRLKEKKLLAKTVTLKLKYS 291
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 286
F+ +TR+ ++ ++I +S DI LL E L S+RL+G+ ++ FN
Sbjct: 292 DFKQQTRSRSIPEFIGNSTDIYAVVEELLYQEKLYESVRLVGVSLSHFN 340
>gi|407420127|gb|EKF38477.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi marinkellei]
Length = 609
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 165/332 (49%), Gaps = 18/332 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I KLCP L+ VPTDF Y + + R + YDPNF + LDE +++T ++
Sbjct: 209 MPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQH 268
Query: 61 -GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
G++ ++A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L R VM
Sbjct: 269 PGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELRLRTRQDVME 328
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 177
F+ +LP+R + GIG+ TE IL + GIN E+ + LC + + T F L +G+
Sbjct: 329 FMKNLPVRTVPGIGRSTESILHGL-GINLLGEIYDRRVELCYILTEKTFCFLLGSSMGVV 387
Query: 178 ---------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 228
GS T +A RK+I ERTF + L + + +++ L
Sbjct: 388 RWMDTDTSDGSERTSEAE-RKTIGMERTFRNLSSRLELQQIAHSALQTAHRRLEENELFC 446
Query: 229 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQF- 285
R + LK K ASF+V + L ++ E + + LL A+ LRL+G+R+
Sbjct: 447 RQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLRIADQYAFLRLVGVRLADII 506
Query: 286 -NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 316
+ Q+TL + + ++S + VG
Sbjct: 507 TKSEYEALQRGGLQRTLLQYCSRSNSSYRAVG 538
>gi|327404453|ref|YP_004345291.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
gi|327319961|gb|AEA44453.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
Length = 370
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 169/300 (56%), Gaps = 12/300 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A +LCPELIFV F +Y S R +F +Y SLDEA+LD+T ++
Sbjct: 71 MPSSMAARLCPELIFVRPRFDRYQEISHQIRAIFYEYTDLVEPLSLDEAFLDVT--TNKK 128
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMT 118
GI S +A+E+R +Y+E GL SAG++ N+ AKV SD+NKPNGQ V+P + V T
Sbjct: 129 GIQSATLLAKEIRERIYQEVGLRASAGISINKFTAKVASDVNKPNGQLTVIPEE---VET 185
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGL 177
F+ LPI + GIGKVT ++++ G+ T +++ QK L F F+ ++ G+
Sbjct: 186 FLEKLPIDRFFGIGKVTATKMKEL-GVRTGKDLKQKSIDFLNQHFGKQGLHFY-NIVRGI 243
Query: 178 GSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R RKS + E T FS K + L +IA L M+K+ + G+ +++K+K
Sbjct: 244 QYSKVKPNRIRKSFAVEHTYFSEIYSKRKILENLEQIALDLERRMKKKSVSGKCVSIKIK 303
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAPSD 295
A F +TRA T+ +Y+S+ E+ +L++ E+ +RL+G+ ++ N ++ D
Sbjct: 304 YADFTQQTRAKTVLEYMSTKEEFFPLIELLVEHLEINKPVRLLGISFSKLNTEETELDQD 363
>gi|120437709|ref|YP_863395.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
gi|117579859|emb|CAL68328.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
Length = 363
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 169/294 (57%), Gaps = 12/294 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M IA++ CP+LIFV F +Y S R++F +Y SLDEAYLD+TE ++
Sbjct: 59 MSSVIAKRNCPDLIFVKPRFERYKEISGQIREIFFEYTDLVEPLSLDEAYLDVTE-NKKG 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+++R + E+ GL SAG++ N+ +AK+ SD+NKPNGQ V P + V+ F
Sbjct: 118 NPSATLIAKQIRDRIKEKTGLNASAGISINKFIAKIASDVNKPNGQKTVQPEE---VIAF 174
Query: 120 ISSLPIRKIGGIGKVT-EHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGL 177
+ L IRK G+GKVT E + R GI T +++ L+ L F S F+ +V G+
Sbjct: 175 LEELDIRKFYGVGKVTAEKMYR--LGIFTGKDLKLKSEEYLTEHFGKSGTHFY-NVVRGI 231
Query: 178 GSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R RKS+ +ERTF+ + + +L IAE + + K + G+T+TLK+K
Sbjct: 232 HLSEVKPHRIRKSLGAERTFNENISSEIFMLERLENIAEEIERRLTKSKVAGKTITLKIK 291
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 289
+ F +TR+ T+ YI++ + IL+ A LL E + S+RL+G+ ++ N +K
Sbjct: 292 YSDFTQQTRSRTINFYIANKDLILEIAKELLYQEKMKNSVRLLGISLSNLNTEK 345
>gi|384097234|ref|ZP_09998355.1| DNA polymerase IV [Imtechella halotolerans K1]
gi|383837202|gb|EID76602.1| DNA polymerase IV [Imtechella halotolerans K1]
Length = 366
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 161/289 (55%), Gaps = 8/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +IA+K CPELIFV F +Y S+ +K+F Y SLDEAYLD+T ++
Sbjct: 62 MSSYIAKKKCPELIFVKPRFDRYKEISESIQKIFYDYTDLVEPLSLDEAYLDVT-YNKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S EIA+E+R +Y GLT SAG++ N+ +AK+ SD NKPNGQ V P + V +F
Sbjct: 121 NPSASEIAKEIRNRIYLNTGLTASAGISINKFIAKIASDYNKPNGQKTVKPKE---VESF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +L IRK GIGKVT + + GI T +++ K ++ + + G +
Sbjct: 178 LEALDIRKFYGIGKVTTEKMY-LLGIFTGKDLKTKSREFLEYHFGNSGSHYYQIVRGFHN 236
Query: 180 TNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ +E TF + L +L I++ L ++K L G+T+TLK+K +
Sbjct: 237 SPVKPERIPKSVGAEHTFLENLSSEVFLKERLDNISQELETRLKKNKLAGKTITLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 286
F ++TR+ TL +IS IL+ A+ LL E L S+RL+G+ ++ N
Sbjct: 297 DFTLQTRSKTLPYFISDKSLILEIATELLYQEKLFNSVRLVGISLSNLN 345
>gi|393723669|ref|ZP_10343596.1| DNA polymerase IV [Sphingomonas sp. PAMC 26605]
Length = 364
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 150/290 (51%), Gaps = 7/290 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+L+FVP F Y S R +F Y SLDEAYLD+TE
Sbjct: 67 MPSVTALRRCPDLVFVPPRFDVYGAISQQIRAIFADYTDQIEPLSLDEAYLDVTEDRHGL 126
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE++R + E LT SAGV+ N+ +AK+ SD NKP+G V+P R + F+
Sbjct: 127 G-SAKAIAEQIRARIKAETRLTASAGVSYNKFIAKLASDQNKPDGICVIPPARGS--AFV 183
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+SLP+++ G+G VT + GI T ++ + S AD+ G+
Sbjct: 184 ASLPVKRFHGVGPVTATRM-AALGIETGADLRDRPLAFLHAHFGSYADYLYGAARGIDHR 242
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KS+ +ERTF A L+ L +AE +++ G+RGRT+TLKL+ +
Sbjct: 243 PVRSNRATKSVGAERTFETDIASPADLHAALDRVAEAALVRIERHGVRGRTMTLKLRFSD 302
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNE 287
F TRA +L + E + LL A+LPV L RL+GL ++ ++
Sbjct: 303 FRTITRARSLSRGAFDRESFVTGGRELLDAQLPVPLGVRLLGLTLSGIHD 352
>gi|329114949|ref|ZP_08243704.1| DNA polymerase IV [Acetobacter pomorum DM001]
gi|326695392|gb|EGE47078.1| DNA polymerase IV [Acetobacter pomorum DM001]
Length = 360
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 156/290 (53%), Gaps = 15/290 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP LIFVP F Y S +F +Y P SLDEAYLD+T R
Sbjct: 61 MPSVQAQRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYLDVTNPLLLR 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P +R F+
Sbjct: 121 P-SATAIAEEIRAAILHETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGE--AFV 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
++LP+ G+G T + GI+T + L++ SL L F + A ++ G+ G
Sbjct: 178 ANLPVNAFHGVGPATAQRM-HTLGIHTGAD-LRRFSLDILRQHFGKAAAFYY---GIARG 232
Query: 179 STNTP--QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ P R RKS+ E TF+ A L+ L E+A + A QK L GRT+TLKL
Sbjct: 233 KDDRPVEPNRPRKSLGKEITFAQDLRTSAELHAALHELAAKVWAGCQKRNLTGRTITLKL 292
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 283
+ F TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 293 RYTDFNQCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRLLGITLS 342
>gi|325266910|ref|ZP_08133581.1| DNA-directed DNA polymerase IV [Kingella denitrificans ATCC 33394]
gi|324981651|gb|EGC17292.1| DNA-directed DNA polymerase IV [Kingella denitrificans ATCC 33394]
Length = 355
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 153/286 (53%), Gaps = 7/286 (2%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ +FVP F Y S ++F +Y +LDEAYLD++ +
Sbjct: 63 AKQLCPQAVFVPPHFDLYRQVSRQIHQIFHQYTDLVEPLALDEAYLDVSH-NKLSVPYAT 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A ++R ++++ GLT SAG+APN+ LAKV SD KPNGQFVLP ++A F+ LPI
Sbjct: 122 DVASQIRAQIFQQTGLTASAGIAPNKFLAKVASDWRKPNGQFVLPPPKIA--AFLHGLPI 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
KI G+G+ T L FG T ++ + F + G+ + +
Sbjct: 180 EKIPGVGQKTAQKLHR-FGWKTAGDVQAASRMQLVHLLGQWGYRFYDLVRGVDNRPVQPS 238
Query: 186 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 245
R R IS+E T + + L ++A +S MQ++ RG+T+TLKLKT+ F + TR
Sbjct: 239 RERVQISTEITVPDDLPREEIALHLPDLAHDISLQMQRKRTRGQTVTLKLKTSDFHIYTR 298
Query: 246 AVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNEDK 289
+ T + +E +LK A LL+ ++P RLIG+ ++ D+
Sbjct: 299 SQTYSSPLPDAESLLKAACTLLQ-KMPGEPEYRLIGIGISHLQPDR 343
>gi|399030722|ref|ZP_10731053.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
gi|398071121|gb|EJL62391.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
Length = 360
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 164/294 (55%), Gaps = 6/294 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G +A+K CPE+IFV F +Y S ++F +Y SLDEAYLD+T+ ++
Sbjct: 62 ISGVLAKKYCPEIIFVRPRFDRYKEISTKIHEIFHEYTDMVEPLSLDEAYLDVTQ-NKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +A+E+R ++ E G+T SAG++ N+ +AK+ SD NKPNGQ + D V+ F+
Sbjct: 121 NPSASLLAQEIRLRIFNEVGITASAGISVNKFVAKIASDYNKPNGQKTVNPDE--VIPFL 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK G+GKVT + + GI T ++ K + F+ +V G+ ++
Sbjct: 179 EELPIRKFYGVGKVTTEKMYQL-GIFTGLDLKSKSVEFLEKHFGKSGGFYFNVVRGIHNS 237
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
+R KS+++E TF V + + +L +IA L ++K + G+T+TLK+K +
Sbjct: 238 EVKASRITKSVAAEHTFDVNLSSEIFMLEQLEKIAVSLEKRLKKYNILGKTVTLKIKYSD 297
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRA 292
F +TR+ TL +I+ IL+ LL E + S+RL+G+ + N ++ +A
Sbjct: 298 FTQQTRSKTLPYFIADKSLILETVEELLYQERMKDSVRLLGISLNNLNTEQKKA 351
>gi|399926725|ref|ZP_10784083.1| DNA polymerase IV, damage-inducible protein DinB [Myroides
injenensis M09-0166]
Length = 347
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 162/296 (54%), Gaps = 8/296 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+ G +A+K CP LIFV F +Y S RK+F +Y SLDEA+LD+T+ +
Sbjct: 48 ISGVLAKKRCPHLIFVKPRFDRYKEISREIRKIFHEYTDLVEPLSLDEAFLDVTK-NKIN 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA E+R +YE LT SAG++ N+ LAK+ SD NKPNGQ + D V+ F+
Sbjct: 107 CPSATLIAYEIRKKIYERLQLTASAGISINKFLAKIASDYNKPNGQKTINPDE--VIEFL 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
+L I+K GIGK T + FGI T +++ +K L F + D++ ++ G+
Sbjct: 165 ENLEIKKFFGIGKKTAEKMYH-FGIFTGKDLKEKSLDFLVTHFGKAGTDYY-NIVRGVHE 222
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ +ERTF + L +L I E L ++K+ + G+T+TLKLK +
Sbjct: 223 SPVQPNRKIKSVGTERTFDENLSSEVFLMERLDLIVEELGLRLKKQNVAGKTITLKLKYS 282
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAP 293
F +TR+ T+ YIS E IL LL E L S+RLIG+ V+ N + + P
Sbjct: 283 DFSQQTRSATVPYYISDRELILDKVKELLYQEKLKDSVRLIGVAVSNLNTEASKKP 338
>gi|119383484|ref|YP_914540.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
gi|119373251|gb|ABL68844.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
Length = 363
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 156/293 (53%), Gaps = 10/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+LIFV F Y S R +F +Y P SLDEAYLD+T+
Sbjct: 63 MPSMRAMRLCPDLIFVKPRFDVYRAVSQQVRAIFAEYTPLVEPLSLDEAYLDLTDHL--N 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G + IA+E+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+P + A F+
Sbjct: 121 GSTATRIAKEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPE--AGAEFV 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
LPI + GIG T + + GI T ++ ++ L A F S A ++ ++ G+ +
Sbjct: 179 QGLPIGRFHGIGPATAARM-EAHGILTGADLARQSLDFLTARFGKSGA-YYWNISRGIDT 236
Query: 180 TNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKSI +E T F D A + LA +A+ + LRGRT+TLK+K
Sbjct: 237 REVKPDRIRKSIGAENTYFEDLRDIAAAHEALAVLADKVWRHTTTAALRGRTVTLKVKYG 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNEDK 289
F TRA +L + + S +++L+ A LL P +RL+G+ ++ E +
Sbjct: 297 DFRQITRARSLPRAVESRDEMLEMACELLAPVFADPHGVRLLGITLSGLEEAR 349
>gi|393909444|gb|EJD75452.1| CBR-POLK-1 protein [Loa loa]
Length = 414
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 136/266 (51%), Gaps = 60/266 (22%)
Query: 4 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT--------- 54
F +KLCP L + F KY S + RK+F YDP+F A LDEAY+++T
Sbjct: 144 FYCKKLCPHLKIISGSFEKYREASSVARKIFRDYDPDFHADGLDEAYINLTTYIQNRFLT 203
Query: 55 ------------------------------------EVC----------RERGISGI--- 65
E+C R+R G+
Sbjct: 204 GSAEHERIRYMGECVCRLPLITENEMYHLVSAEITEEICTKCKKLRKCVRDRITFGVDVD 263
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
EI E+R V + GLTCSAG+APN LLAKVCS+INKPNGQ+ L N+R AV+ F+ LPI
Sbjct: 264 EIVHEIRFRVEQAVGLTCSAGIAPNSLLAKVCSNINKPNGQYRLLNEREAVLNFLKDLPI 323
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
RKI GIG VTE +L+ + G+ C ++ ++ ++ +F+ + ++FL + G+ +
Sbjct: 324 RKISGIGPVTEAVLKGI-GLEKCGDLYEQRGIISLLFTQRSCEYFLRIARGISHVFSVDR 382
Query: 186 RF-RKSISSERTFSVTEDKALLYRKL 210
+ RKSIS+ERTF T D L ++
Sbjct: 383 KIRRKSISTERTFHPTGDLGALLEEM 408
>gi|241759928|ref|ZP_04758028.1| DNA polymerase IV [Neisseria flavescens SK114]
gi|241319936|gb|EER56332.1| DNA polymerase IV [Neisseria flavescens SK114]
Length = 352
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 154/285 (54%), Gaps = 11/285 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ +FVP F Y S VF +Y SLDEAYLD+T+ E
Sbjct: 63 AKRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTQNF-ENVPYAS 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+ SLP+
Sbjct: 122 EVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--IMAFLESLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT + + GI T ++ ++G LL + + L+ G+
Sbjct: 180 GKIPGVGKVTLKKM-NALGIQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERPVKAE 238
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
+ R + IS+E T A + L +AE L ++++ + + +TLKLKT F +
Sbjct: 239 RERLQ--ISTEITLPEDLSLAQVSSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHDFRII 296
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
TR++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 297 TRSLTYSSVLPDSTSLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|311747596|ref|ZP_07721381.1| DNA polymerase IV [Algoriphagus sp. PR1]
gi|126575578|gb|EAZ79888.1| DNA polymerase IV [Algoriphagus sp. PR1]
Length = 365
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 158/276 (57%), Gaps = 14/276 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M IA + CP LIF F +Y S + R+VF +Y SLDEA+LD+TE ++
Sbjct: 64 MASSIAVRKCPHLIFAKPRFDRYRELSLMIREVFYEYTDLVEPLSLDEAFLDVTE--NKK 121
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMT 118
GI S I IA ++R + E+ L SAGV+ N+ LAK+ SD+NKPNGQ ++LP D
Sbjct: 122 GINSAILIARQIRQKIKEKTNLNASAGVSYNKFLAKIASDLNKPNGQAYILPED---AEE 178
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGL 177
F+ LPI K GIGKVT ++ + GI+ ++ Q L F S +F ++ G+
Sbjct: 179 FLEKLPIGKFFGIGKVTAEKMQKI-GIHNGADLKQFSLQFLSKKFGKSGLHYF-NIVRGI 236
Query: 178 GSTNTPQARFRKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ R RKS+S+E TF V T D+ LL KL I E + + K G++GRT+TLKL
Sbjct: 237 HLSEVQPHRVRKSLSAENTFEVDLTTDEELL-NKLQPIYEEVIRRLDKSGIKGRTVTLKL 295
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 271
K + F ++TR+ TL++Y E I + A LL+ E+
Sbjct: 296 KYSDFSLQTRSKTLEQY-PDKEMIWEIAKELLEQEV 330
>gi|374596002|ref|ZP_09669006.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
gi|373870641|gb|EHQ02639.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
Length = 349
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 162/290 (55%), Gaps = 10/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M IA++ CP+LIF+ F +Y S+ R +F +Y SLDEAYLD+TE ++
Sbjct: 48 MSSVIAKRNCPDLIFIKPRFERYREISNQIRAIFLEYTDLVEPLSLDEAYLDVTE-NKKG 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA E+R + + GL SAG++ N+ +AK+ SDINKPNGQ + P D V+ F
Sbjct: 107 NPSATLIAREIREKIKNKTGLNASAGISVNKFIAKIASDINKPNGQKTINPED---VLEF 163
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ L +RK G+GKVT + + GI ++ QK L F S ++ +V G+
Sbjct: 164 LEKLQVRKFHGVGKVTAEKMYQL-GIFNGFDLKQKSLEFLIENFGKSGLHYY-NVVRGIH 221
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +ERTF + + +L IAE + +QK + G+T+TLK+K
Sbjct: 222 LSEVKPNRIRKSLGAERTFDTNISSEIFMLERLQNIAEEIERRLQKSKVAGKTVTLKIKY 281
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFN 286
+ F TR+ TL +ISS + +L+ A +L + ++ S+RL+G+ ++ N
Sbjct: 282 SDFTQHTRSKTLPYFISSKDLVLECAKELLFQEKMKESVRLLGISLSNLN 331
>gi|261334854|emb|CBH17848.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 570
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 17/298 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPG+I K+CP L+ +P DF Y S+ R++ +YDPN+++ LDE L+++ + R
Sbjct: 184 MPGYIGLKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGLDELTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTRQDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + GIGK E +L+ GI T ++ + LC +F+ T F L +G+
Sbjct: 304 TYVRDLGLRSVPGIGKAMEALLKG-LGITTLSDIYNRRVELCYIFTEKTYRFLLGASIGI 362
Query: 178 -----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL 226
GS + RKS+ SERTF + + K L + I +++K L
Sbjct: 363 MQWPDACNIPGGSVDDGTGVGRKSVGSERTFKILQSKEELQEIVDFIFNSSYDELKKHEL 422
Query: 227 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRV 282
R ++L+++ A++ R + L ++ S + + LL A + L+G+R+
Sbjct: 423 MCRQVSLRIRWATYRSRQYTMNLAQHSDDSATLRRAVDGLLLPHAAKYSDMSLLGMRL 480
>gi|423132540|ref|ZP_17120190.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
gi|371639611|gb|EHO05227.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
Length = 356
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 158/295 (53%), Gaps = 6/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A+K CP LIFV F +Y S + R VF +Y +LDEA+LD+TE +
Sbjct: 57 MSAMMAKKNCPHLIFVKPRFERYKEVSRIIRSVFYEYTDLVEPLALDEAFLDVTE-NKIG 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA E+R + E GLT S G++ N+ LAK+ SD NKPNGQ + D V+ F+
Sbjct: 116 CPSATLIAHEIRMKILERTGLTASVGISINKFLAKIASDYNKPNGQKTIEPDE--VINFL 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L I+K GIGK T + + GI T +++ K + + GL ++
Sbjct: 174 EELEIKKFFGIGKKTADRMYHL-GIFTGKDLKAKSVEFLTEHFGKAGQIYYDIVRGLSNS 232
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KS+ +ERTF + + KL + E LS ++K+GL G+T+TLK+K +
Sbjct: 233 PVRPNRTIKSVGTERTFDENLSSEVFIETKLDILVEELSLRLKKQGLGGKTITLKIKYSD 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAP 293
F +TR+ T+ ++S E IL A VLL E L S+RLIG+ ++ N D+ + P
Sbjct: 293 FVQQTRSTTVPYFVSDKEIILDLAKVLLYQEKLKDSVRLIGVSLSNLNTDEKKKP 347
>gi|390169745|ref|ZP_10221678.1| DNA polymerase IV [Sphingobium indicum B90A]
gi|389587749|gb|EIM65811.1| DNA polymerase IV [Sphingobium indicum B90A]
Length = 359
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 164/295 (55%), Gaps = 13/295 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+LCP+L+FV F Y S R++F ++ SLDEAYLD+T +
Sbjct: 60 MPGARARRLCPDLLFVRPRFEVYRAVSAQVREIFSRFTDIIQPLSLDEAYLDVTR--NKP 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
GI S IAEE+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ P + A
Sbjct: 118 GIPSATRIAEEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPDGICVVRPQEGAA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI+ +P+R+I G+G VT ++ GI T ++ + S A F+ G
Sbjct: 175 FIAKMPVRRIHGVGPVTAKRMQ-ALGIETGADLRARDLPFLQHHFGSAALFYYRASRGED 233
Query: 179 STNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ + RKS+S E TF +T + AL+ +L IAE L ++K G GRT+ LK+K
Sbjct: 234 DRPVHERQERKSVSVEDTFFDDLTAEDALIV-ELDRIAENLWGRIEKSGAYGRTVVLKVK 292
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNEDK 289
A F + TR+ + + S + + + LL+A+LP+ + RL+GL V + ++
Sbjct: 293 FADFRIITRSRSFAAPLRSPDLLAETGRALLRAQLPLRMGARLLGLGVHNLDHEE 347
>gi|319952817|ref|YP_004164084.1| DNA polymerase iv [Cellulophaga algicola DSM 14237]
gi|319421477|gb|ADV48586.1| DNA polymerase IV [Cellulophaga algicola DSM 14237]
Length = 366
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 160/289 (55%), Gaps = 8/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A++ CP++ FV F +Y S RK+F Y SLDEAYLD+T V ++
Sbjct: 62 MSSVMAKRNCPQITFVQPRFERYKEISQKIRKIFYDYTDLVEPLSLDEAYLDVT-VNKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+E+R +++E GL SAG++ N+ +AKV SD NKPNGQ V P + V+ F
Sbjct: 121 NPSASLIAKEIRQRIFDELGLVASAGISINKFIAKVASDYNKPNGQKTVNPEE---VIEF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L IRK G+GKVT + + GI T ++ QK + + ++ V G+ +
Sbjct: 178 LEKLEIRKFYGVGKVTTEKMYKL-GIFTGFDLKQKSEIFLTENFGKSGGYYYHVVRGVHN 236
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ +ERTFS + + +L IA L ++K + G+T+TLK+K +
Sbjct: 237 SAVKPHRIPKSVGAERTFSENLSSEIFMLERLEHIATELERRLKKSTISGKTITLKIKYS 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 286
F ++TR+ TL+ YI+ IL+ A LL E L S+RL+G+ + N
Sbjct: 297 DFTLQTRSKTLRYYIADKHLILETAKELLYQEKLENSVRLLGISLANLN 345
>gi|418056114|ref|ZP_12694168.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
gi|353210392|gb|EHB75794.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
Length = 360
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 17/296 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP L+FVP F Y S R +F +Y P SLDEAYLD+TE R
Sbjct: 61 MPSTKALRQCPSLVFVPPRFEIYRAVSQQIRAIFARYTPLIEPLSLDEAYLDVTENLR-- 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + + A E+R + E GLT SAGV+ N+ LAK+ SD+ KPNGQFV+P R A F
Sbjct: 119 GLPTASDTAAEIRARILAETGLTASAGVSYNKFLAKLASDVRKPNGQFVIPPQRGA--EF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
I LP+++ G+G VT + + GI T ++ Q L F S A ++ ++ G
Sbjct: 177 IEGLPVKQFHGVGPVTAEKM-NALGIQTGADLRAQSLEFLQQHFGRSGA-WYYAIARGED 234
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKS SE TFS ED+ L + + E+A+ + A +K G T+T+K+
Sbjct: 235 DRPVEPNRPRKSSGSETTFS--EDRLLPAEIEAGVLEMADDVWAWCEKNQSFGATVTVKI 292
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASV-LLKAELPVS--LRLIGLRVTQFNED 288
K A F + TR+ T + + ++ D+L S+ L+++ PV+ +RL+G+ V++F+ D
Sbjct: 293 KFADFRIVTRSRTASRPV-TAHDLLHEISLALVRSIYPVTTGVRLVGVSVSKFSSD 347
>gi|420238527|ref|ZP_14742925.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
gi|398086197|gb|EJL76826.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
Length = 366
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 161/301 (53%), Gaps = 16/301 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S R++F +Y SLDEAYLD+TE +
Sbjct: 64 MPSVTAKRKCPDLIFVPPRFDVYKAISQQIREIFAEYTMLIEPLSLDEAYLDVTENLKGM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ PN+ +F
Sbjct: 124 AIA-TEIALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPNNG---PSF 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T +R + GI T ++ K + + +F V G+
Sbjct: 180 VEALPVKKFHGVGPATAERMRKL-GIETGLDLKSKSLIFLQEHFGKSGPYFYGVARGIDE 238
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEGLRGRTLTLKLK 236
R RKS+ +E TF ED L R AE+ + + + +G+ G+T+T+K+K
Sbjct: 239 RRVRADRIRKSVGAEDTF--VEDIDDLERATAELKPLSDKIWLYCEAQGISGKTVTVKIK 296
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPS 294
+ F TR+ T ++ D+ AS LL P S+RL+G+ ++ +D+ PS
Sbjct: 297 YSDFTQATRSRTGIAPFANMSDVFDAASALLATVYPFKRSVRLLGVTLSSLTKDQ---PS 353
Query: 295 D 295
D
Sbjct: 354 D 354
>gi|407420129|gb|EKF38479.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi marinkellei]
Length = 513
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 156/301 (51%), Gaps = 23/301 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I KLCP L+ VPTDF Y + + R + YDPNF + LDE +++T ++
Sbjct: 165 MPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQH 224
Query: 61 -GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
G++ ++A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L R VM
Sbjct: 225 PGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELRLRTRQDVME 284
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ +LP+R + GIG V E LR + GI TC +L+K LL +F T F+LS GLG+
Sbjct: 285 FMKNLPVRTVPGIGPVQEAALR-ILGIRTCGCLLRKKVLLFFLFPEKTFRFYLSAGLGVV 343
Query: 179 STN---TPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEML---SADMQKEGLR 227
N T R +K++ E TF S E K ++ + L + L A Q+
Sbjct: 344 RNNADRTRSDRTQKTMGHEITFKRRLKSEAELKQIVLKVLVAVHTTLLLRRAAAQR---- 399
Query: 228 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+TL +K +FE +TL + + + K LL+ L + RL+G+R+ +
Sbjct: 400 ---VTLHMKRRTFENHQFTLTLGEATNDFAALRKATWKLLQPHLASFDNFRLVGVRLGKL 456
Query: 286 N 286
Sbjct: 457 Q 457
>gi|373111204|ref|ZP_09525464.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|423135773|ref|ZP_17123418.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|423329499|ref|ZP_17307305.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
gi|371640315|gb|EHO05919.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|371641265|gb|EHO06852.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|404603127|gb|EKB02802.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
Length = 356
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 158/295 (53%), Gaps = 6/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A+K CP LIFV F +Y S + R VF +Y +LDEA+LD+TE +
Sbjct: 57 MSAMMAKKNCPHLIFVKPRFERYKEVSRIIRSVFYEYTDLVEPLALDEAFLDVTE-NKIG 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA E+R + E GLT SAG++ N+ LAK+ SD NKPNGQ + D V+ F+
Sbjct: 116 CPSATLIAHEIRMKILERTGLTASAGISINKFLAKIASDYNKPNGQKTIEPDE--VINFL 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L I+K GIGK T + + GI T +++ K + + GL ++
Sbjct: 174 EELEIKKFFGIGKKTADRMYHL-GIFTGKDLKAKSVEFLTEHFGKAGQIYYDIVRGLSNS 232
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KS+ +ERTF + + KL + E LS ++K+ L G+T+TLK+K +
Sbjct: 233 PVRPNRTIKSVGTERTFDENLSSEVFIETKLDMLVEELSLRLKKQSLGGKTITLKIKYSD 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAP 293
F +TR+ T+ ++S E IL A VLL E L S+RLIG+ ++ N D+ + P
Sbjct: 293 FVQQTRSTTVPYFVSDKEIILDLAKVLLYQEKLKDSVRLIGVSLSNLNTDEKKKP 347
>gi|363582785|ref|ZP_09315595.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium HQM9]
Length = 365
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 153/270 (56%), Gaps = 9/270 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A+KLCPELIFV F +Y S R +F +Y SLDEAYLD+T V ++
Sbjct: 61 MSSVVAKKLCPELIFVRHHFERYKEVSQQVRAIFFEYTDLVEPLSLDEAYLDVT-VNKKG 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IAEE+R + ++ GLT SAG++ N+ +AKV SD NKPNGQ V P + V+ F
Sbjct: 120 NPSATLIAEEIREKILQKTGLTASAGISINKFIAKVASDYNKPNGQKTVHPTE---VLDF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ +L I+K G+GKVT+ + GI T ++ K + L F S A ++ V G+
Sbjct: 177 LEALDIKKFYGVGKVTQKKMY-ALGIYTGADLKTKTEAYLTENFGKSGAHYYRIV-RGIH 234
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKSI +ERTF+ + + +L E++E L+ + K + G+T+TLK+K
Sbjct: 235 HSAVKPHRTRKSIGAERTFNENLASEIFMEERLKELSEELARRLTKSDVAGKTITLKIKY 294
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL 267
+ F V TR+ T+ YI + + + A LL
Sbjct: 295 SDFSVHTRSKTIAYYICDANLLFEVAKELL 324
>gi|71756019|ref|XP_828924.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834310|gb|EAN79812.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 570
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 17/298 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPG+I K+CP L+ +P DF Y S+ R++ +YDPN+++ LDE L+++ + R
Sbjct: 184 MPGYIGLKICPNLLILPPDFDTYNEESNTVRRIVAEYDPNYISFGLDELTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTRGDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + GIGK E +L+ GI T ++ + LC +F+ T F L +G+
Sbjct: 304 TYVRDLGLRSVPGIGKAMEALLKG-LGITTLSDIYNRRVELCYIFTEKTYRFLLGASIGI 362
Query: 178 -----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL 226
GS + RKS+ SERTF + + K L + I +++K L
Sbjct: 363 MQWPDACNIPGGSVDDGTGVGRKSVGSERTFKILQSKEELQEIVDFIFNSSYDELKKHEL 422
Query: 227 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRV 282
R ++L+++ A++ R + L ++ S + + LL A + L+G+R+
Sbjct: 423 MCRQVSLRIRWATYRSRQYTMNLAQHSDDSATLRRAVDGLLLPHAAKYSDMSLLGMRL 480
>gi|365961688|ref|YP_004943255.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
gi|365738369|gb|AEW87462.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
Length = 358
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 166/294 (56%), Gaps = 14/294 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G A++LCPELIFV F +Y S RK+F +Y SLDEAYLD+T+ ++
Sbjct: 60 MTGIQAKRLCPELIFVKPRFERYREISLKIRKIFYEYTDLVEPLSLDEAYLDVTQ-NKKN 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA E+R + +E GLT SAG++ N+ +AK+ SD NKPNGQ + P+D V F
Sbjct: 119 NPSATLIASEIRQRIVDEVGLTASAGISINKFVAKIASDYNKPNGQKTIHPDD---VTLF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ SL I+K GIGKVT + + GI T +++ K L F S ++ L G
Sbjct: 176 LESLDIKKFYGIGKVTTEKMYQL-GIYTGQDLKSKTIEYLEEHFGKSGTHYY---HLVRG 231
Query: 179 STNTPQA--RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+N+P R KS+++E TF + + KL IA+ L+ +QK L G+T+TLK+
Sbjct: 232 ISNSPVKPNRASKSVAAEHTFYTNLTSEIFMEEKLERIADELAKRLQKHKLSGKTVTLKI 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
K + F +TR+ TL +++ +L+ A LL + + S+RL+G+ ++ N +
Sbjct: 292 KYSDFSQQTRSKTLPYFVADRNVLLEVAKELLYQDRMKDSVRLLGISLSNLNTE 345
>gi|71415110|ref|XP_809633.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70874045|gb|EAN87782.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 604
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 149/297 (50%), Gaps = 16/297 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I KLCP L+ VPTD Y + + R + YDPNF + LDE +++T ++
Sbjct: 208 MPGYIGVKLCPSLVIVPTDLDAYHAEAAVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQH 267
Query: 61 -GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
G++ ++A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L R VM
Sbjct: 268 PGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELRLRTRQDVME 327
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 177
F+ LP+R + GIG+ TE IL GIN E+ + LC + + T F L +G+
Sbjct: 328 FMKDLPVRTVPGIGRSTESILHG-LGINLLGEIYDRRVELCYILTEKTFCFLLGSSMGVV 386
Query: 178 ---------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 228
GS T +A RKSI ERTF + L + + +++ L
Sbjct: 387 RWMDADTNDGSERTTEAE-RKSIGMERTFRNLSSRLELQQIAHSALQTAHRRLEENELFC 445
Query: 229 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVT 283
R + LK K ASF+V + L ++ E + + LL A+ LRL+G+R+
Sbjct: 446 RQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLRIADQYAFLRLVGVRLA 502
>gi|406663875|ref|ZP_11071888.1| DNA polymerase IV [Cecembia lonarensis LW9]
gi|405551867|gb|EKB47480.1| DNA polymerase IV [Cecembia lonarensis LW9]
Length = 361
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 156/289 (53%), Gaps = 9/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A CP+L+FV F +Y S+ R++F Y SLDEA+LD+TE +
Sbjct: 59 MSGKLAALKCPKLVFVKPRFDRYKELSNQIREIFYDYTDLVEPLSLDEAFLDVTE-NKVN 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+E+R + EE GL SAG++ N+ LAK SDINKPNGQ +LP + A F
Sbjct: 118 NPSATLIAQEIRGRIREEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEA---F 174
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ LPI K GIGKVT ++ + GI+ ++ Q L F S FF ++ G+
Sbjct: 175 LEKLPIEKFFGIGKVTAEKMKSI-GIHNGHDLKQFSIQYLTKKFGKSGLHFF-NIVRGIH 232
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+S+E TF D+ L EI E L + + G++GRT+TLK+K
Sbjct: 233 LSEVQPNRIRKSLSAENTFEKDLSDRVSFEAALLEIFEELKRRINRTGIKGRTVTLKIKY 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFN 286
+ F ++TR+ T ++Y + +L + L + +RL G+ ++ N
Sbjct: 293 SDFTIQTRSKTFEQYPEEQKIWETVMDLLQQDALALPVRLFGIGLSNLN 341
>gi|319638499|ref|ZP_07993261.1| DNA polymerase IV [Neisseria mucosa C102]
gi|317400248|gb|EFV80907.1| DNA polymerase IV [Neisseria mucosa C102]
Length = 352
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 154/285 (54%), Gaps = 11/285 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ +FVP F Y S VF +Y SLDEAYLD+T+ + +
Sbjct: 63 AKRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTQNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+ SLP+
Sbjct: 122 EVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPPK--IMAFLESLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT + + G+ T ++ ++G LL + + L+ G+
Sbjct: 180 GKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERPVKAE 238
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
+ R + IS+E T A L +AE L ++++ + + +TLKLKT F +
Sbjct: 239 RERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHDFRII 296
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
TR++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 297 TRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|403343923|gb|EJY71296.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 894
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 160/298 (53%), Gaps = 17/298 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-- 58
+PGFI ++LC +LIFV D KY +K+ +DP S DE LD+T+ +
Sbjct: 354 LPGFIGKRLCKDLIFVKPDKEKYQKEYAEIKKLLQDFDPLLECPSPDEFLLDVTQYIKTY 413
Query: 59 --ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ + I + +++R + ++ LT S GVA N+LLAK+CSD NKP+G L + + +
Sbjct: 414 NLDDDLGRIFLGDKIRKLILQKTQLTASCGVACNKLLAKICSDFNKPDGLTFLQLNAVEI 473
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +LPI+K+ GIGKVTE I+ + GI C++++ K + F+ + DF + LG
Sbjct: 474 SKFMDNLPIKKLQGIGKVTEMIM-NGLGIFNCKDIVVKAREIYINFTENVFDFLVKSALG 532
Query: 177 LGST-NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+G + Q + +KS+S +F D LL K+ E+A+ L+ E L GRTLT++
Sbjct: 533 IGKNLHDEQTQIKKSLSVAESFKNINDYELLKNKVIELAKELAQKCVAEQLLGRTLTMEY 592
Query: 236 KTASFEVRT---------RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 282
KT + + R + Y + E+++ + L P+ +R+IGL++
Sbjct: 593 KTKNLLTKQKYTSNIQPYRQYSSSIYTDNEEELVNVSLKLFHQIWPIDGGMRMIGLKL 650
>gi|424912575|ref|ZP_18335952.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392848606|gb|EJB01129.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 365
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+LIFV F Y S R++F +Y P SLDEAYLD+TE ++
Sbjct: 64 MPSVTAARKCPDLIFVKPRFEVYRAVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKDM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 124 PIA-TEIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L ++K G+G T + + GI T ++ K + +F + G+
Sbjct: 180 VEQLAVKKFHGVGPATAEKMHRL-GIETGADLKAKSLPFLVEHFGKSGPYFYGIARGIDE 238
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF+ +D L R+L +AE + + + +G G+T+T+K+K +
Sbjct: 239 RQVRPDRVRKSVGAEDTFTADIDDLELATRELRPLAEKVWSYCEAKGFSGKTVTVKIKYS 298
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
F TR+ T S++EDIL A+ LL P +RL+G+ ++ DK
Sbjct: 299 DFTQATRSRTTAIPYSNAEDILDAANTLLAGVYPFKRPVRLLGVTLSSLTNDK 351
>gi|119616168|gb|EAW95762.1| polymerase (DNA directed) kappa, isoform CRA_a [Homo sapiens]
Length = 396
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 114/174 (65%), Gaps = 3/174 (1%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 221 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 279
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 280 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 338
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+ + L L
Sbjct: 339 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKKKYLPL 392
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 86 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 145
>gi|344205893|ref|YP_004791034.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
gi|343777255|gb|AEM49808.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
Length = 364
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 159/297 (53%), Gaps = 21/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE
Sbjct: 59 MPAVRAERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTEPK--- 115
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SGIE IA +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 116 --SGIELATDIARTIRTQIREETRLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 171
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ SLP+ ++ G+GKV E L GI TC ++ Q + S + G
Sbjct: 172 DAFLLSLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARG 230
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + +SISSE TF+ ED L L + ++AE +K G T+ LK
Sbjct: 231 IDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWNATRKTERVGHTVVLK 288
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 289 LKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|404448685|ref|ZP_11013677.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
gi|403765409|gb|EJZ26287.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
Length = 360
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 162/296 (54%), Gaps = 11/296 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A CP LIFV F +Y S R++F Y SLDEA+LD+TE +
Sbjct: 59 MSGKMAALKCPHLIFVKPRFDRYKEISTRIREIFYAYTDLVEPLSLDEAFLDVTE-NKVG 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+E+R + EE GL SAG++ N+ LAK SDINKPNGQ +LP D +F
Sbjct: 118 NPSATLIAKEIRARIKEEIGLNASAGISYNKFLAKTASDINKPNGQAVILPQD---AESF 174
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ LPI K GIGKVT ++ + GI+ ++ Q L F S F+ ++ G+
Sbjct: 175 LEKLPIEKFFGIGKVTSEKMKSL-GIHNGYDLKQFSLQFLTKRFGKSGLHFY-NIVRGIH 232
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+S+E TFS + + L+EI E L ++K G++GRT+TLK+K
Sbjct: 233 LSEVQPNRIRKSLSAENTFSTDLKSEVEWLAALSEIFEELKRRVEKSGIKGRTVTLKIKY 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNEDKVRA 292
F ++TR+ T ++Y + I + LL+ E VS +RL G+ ++ N ++ R
Sbjct: 293 HDFNIQTRSRTFEQYPEEGK-IWETVLELLRQEALVSPVRLFGIGLSNLNVEEERV 347
>gi|20806775|ref|NP_621946.1| DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
gi|254478433|ref|ZP_05091810.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
gi|22095608|sp|P58965.1|DPO4_THETN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|20515235|gb|AAM23550.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacter tengcongensis MB4]
gi|214035604|gb|EEB76301.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
Length = 384
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 164/289 (56%), Gaps = 11/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++A+KLCP+ IF+P +Y S+ ++ P S+DEAYLD+T V +
Sbjct: 57 MPMYMAKKLCPQGIFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVTHVDK-- 114
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA E++ V + GLT S G++ N+ LAK+ SD NKP+G V+ D V +
Sbjct: 115 --NPEDIALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITED--MVPEIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
LP+ K+ GIG+ + LR + GI T E++L+ L +F + + + + G+
Sbjct: 171 KPLPVTKVHGIGEKSAEKLRSI-GIETVEDLLKLPQENLIELFGKTGVEIYNRIR-GIDE 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI E+T T++K LL + L E +E++S ++ KE L RT+T+K+KTA
Sbjct: 229 RPVETMREIKSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVKIKTA 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 286
F V T++ T+ KYI SEDI + A +L + +L +RLIGL V+ +
Sbjct: 289 DFAVHTKSKTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGLSVSNLS 337
>gi|225023349|ref|ZP_03712541.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
gi|224943827|gb|EEG25036.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
Length = 361
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 154/293 (52%), Gaps = 19/293 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+LCP+ +FVP F Y S VF ++ SLDEAYLD+T ++
Sbjct: 59 MPAATARRLCPQAVFVPPRFHLYREVSQQIHAVFRQHTDLVEPLSLDEAYLDVTH-NKQN 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
EIA +R + + GLT SAG+APN+ LAK+ SD KPNGQFV+P R+A F+
Sbjct: 118 LPYASEIAAAIRAEILRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIPPPRIA--QFL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSL--LCAVFSHSTADFFLSVGLG 176
+LP+ KI G+GK T + G+ T ++ +Q+G L L + + D L
Sbjct: 176 LTLPLGKIPGVGKKTLQKM-HALGLQTAGDLQKMQRGELVNLFGRWGYRLYD------LA 228
Query: 177 LGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
G N P R R IS+E T + + R LA++A+ L A Q++ ++ TLTLK
Sbjct: 229 RGIDNRPVQPQRERLQISTEITLPQDLPLSKIVRHLADLAKDLWAQAQRKQVQAHTLTLK 288
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 285
LKTA F + TR+ T + + L+ A+ L +P RLIGL ++
Sbjct: 289 LKTADFHILTRSQTYSSVLPDAA-ALEQAARQLAQRMPAGRDYRLIGLGISHL 340
>gi|376296835|ref|YP_005168065.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans ND132]
gi|323459397|gb|EGB15262.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans ND132]
Length = 386
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 160/299 (53%), Gaps = 15/299 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCPE+I VP +Y S L ++ P AS+DEAYLD T + R G
Sbjct: 53 ARKLCPEIILVPGRMGRYKEVSHLVMDALREFSPTVEQASVDEAYLDGTGLERLFGPVD- 111
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
EI ++ V E GLTCS G AP R LAK+ SD++KP+G F++ ++ +A F+ +LP+
Sbjct: 112 EIGRRIKARVKEATGLTCSVGAAPVRFLAKIASDMDKPDGMFIVRHEEVA--EFLQTLPV 169
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
KI G+G +L+ G+ TC ++L K G A + G+ T
Sbjct: 170 GKIPGVGAKLLEVLKR-LGVRTCGDILLKPGEYWEERLGKYGAALY-DRARGIDPTPVTP 227
Query: 185 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
KS S+E TF T D+ALL + L +E + D+++ G +GRT+TLK+K A F
Sbjct: 228 CEAAKSCSAENTFREDTTDRALLRKWLLAQSERVGEDLRRHGYKGRTVTLKVKYADFSQI 287
Query: 244 TRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTL 301
TR+ +L+ ++ I + A LL + +LP ++RLIG+ V+ F + P Q TL
Sbjct: 288 TRSRSLEARTDNTAVIFETACGLLEQVKLPRAVRLIGVGVSNFG-------ARPRQVTL 339
>gi|334345787|ref|YP_004554339.1| DNA polymerase IV [Sphingobium chlorophenolicum L-1]
gi|334102409|gb|AEG49833.1| DNA polymerase IV [Sphingobium chlorophenolicum L-1]
Length = 359
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 162/293 (55%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+LCP+L+FV F Y S R++F ++ SLDEAYLD+T +
Sbjct: 60 MPGARARRLCPDLLFVRPRFEVYRAVSAQVREIFSRFTDIIQPLSLDEAYLDVTR-NKPD 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAEE+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ + A FI
Sbjct: 119 IPSATRIAEEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPDGICVVRPEEGA--AFI 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ +P+R+I G+G VT ++ GI T ++ + S A F+ G
Sbjct: 177 AKMPVRRIHGVGPVTAKRMQ-ALGIETGADLRARDLAFLQHHFGSAALFYYRASRGEDDR 235
Query: 181 NTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ + RKS+S E TF +T + AL+ ++ IAE L + ++K G GRT+ LK+K A
Sbjct: 236 PVHERQERKSVSVEDTFFDDLTAEDALIT-EIDRIAENLWSRIEKSGAYGRTVVLKVKFA 294
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNEDK 289
F + TR+ + + S + + + LL+A+LP+ + RL+GL V + ++
Sbjct: 295 DFRIITRSKSFGGPVRSPDILAETGRALLRAQLPLRMGARLLGLGVHNLDHEE 347
>gi|33592070|ref|NP_879714.1| DNA polymerase IV [Bordetella pertussis Tohama I]
gi|33596271|ref|NP_883914.1| DNA polymerase IV [Bordetella parapertussis 12822]
gi|33602069|ref|NP_889629.1| DNA polymerase IV [Bordetella bronchiseptica RB50]
gi|384203372|ref|YP_005589111.1| DNA polymerase IV [Bordetella pertussis CS]
gi|408415972|ref|YP_006626679.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|410419849|ref|YP_006900298.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|410473391|ref|YP_006896672.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|412338221|ref|YP_006966976.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|427814305|ref|ZP_18981369.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|427821228|ref|ZP_18988291.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|427821749|ref|ZP_18988811.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
gi|33566040|emb|CAE36936.1| DNA-damage-inducible protein p [Bordetella parapertussis]
gi|33571714|emb|CAE41211.1| DNA-damage-inducible protein p [Bordetella pertussis Tohama I]
gi|33576507|emb|CAE33585.1| DNA-damage-inducible protein p [Bordetella bronchiseptica RB50]
gi|332381486|gb|AEE66333.1| DNA polymerase IV [Bordetella pertussis CS]
gi|401778142|emb|CCJ63525.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|408443501|emb|CCJ50161.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|408447144|emb|CCJ58816.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|408768055|emb|CCJ52813.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|410565305|emb|CCN22860.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|410572228|emb|CCN20497.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|410587014|emb|CCN02044.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
Length = 361
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 163/311 (52%), Gaps = 37/311 (11%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A++LCP+ ++VP DF +Y S R +F ++ SLDEAYLD+T C +
Sbjct: 60 MAAARAQRLCPDAVYVPPDFNRYREVSRQVRAIFARHTDLIEPLSLDEAYLDVT--CNKL 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+G FV+ R V+ F
Sbjct: 118 GLASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVIKPSR--VLDF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---------- 169
+ LP+RK+ G+GKV + L + GI T ++ + HS A+
Sbjct: 176 LQPLPVRKVPGVGKVMQARL-EQLGIQTVGDLSR----------HSVAELEQRFGRYGVR 224
Query: 170 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-- 227
+ G+ + + +S+E TF D L L E E L+A + ++G +
Sbjct: 225 LYELARGIDERAVQADQPAQQVSAETTF----DTDLALEALGEALERLAAKVWEQGAKKG 280
Query: 228 --GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPV--SLRLIGLRV 282
GRT LKLKT F + TR++TL + S+ ++ A L + +LP RL+G+ +
Sbjct: 281 RIGRTTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQLCTRVDLPAHTRYRLVGVGM 340
Query: 283 TQFNEDKVRAP 293
+ F + + AP
Sbjct: 341 SNFPDAQAEAP 351
>gi|440749593|ref|ZP_20928839.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
gi|436481879|gb|ELP38025.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
Length = 369
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 160/290 (55%), Gaps = 11/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG IA CP LIFV F +Y S R++F Y SLDEA+LD+TE +
Sbjct: 62 MPGKIAALRCPGLIFVRPRFERYKEISGQIRQIFLDYTDLVEPLSLDEAFLDVTE-NKVN 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA E+R + +E GL SAG++ N+ LAK SDINKPNGQ +LP + A F
Sbjct: 121 NPSATRIALEIRKRIKDELGLNASAGISYNKFLAKTASDINKPNGQAVILPKNAEA---F 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ LPI + GIGKVT ++++ GI+ ++ Q L F S F+ ++ G+
Sbjct: 178 LEKLPIERFYGIGKVTAEKMKEL-GIHNGFDLKQYSVQYLTKKFGKSGLHFY-NIVRGIH 235
Query: 179 STNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R RKS+S+E TFS ++ED+ + L I E + M++ G++GRT+TLK+K
Sbjct: 236 LSEVKPNRIRKSLSAESTFSKDISEDEQIA-DALERIWEEVVRRMERSGVKGRTVTLKIK 294
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFN 286
F + TR+ T++K++ + + + L ++RL+G+ ++ N
Sbjct: 295 YHDFTIHTRSKTIEKFLEPARIKEIIWELWHQEPLVAAVRLLGIGISNLN 344
>gi|225075588|ref|ZP_03718787.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
gi|224953010|gb|EEG34219.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
Length = 352
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 153/289 (52%), Gaps = 19/289 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ +FVP F Y S VF +Y SLDEAYLD+T R I
Sbjct: 63 AKRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVT-----RNFENI 117
Query: 66 ----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 121
E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+
Sbjct: 118 PYASEVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--IMAFLE 175
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
SLP+ KI G+GKVT + + G+ T ++ ++G LL + + L+ G+
Sbjct: 176 SLPLGKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERP 234
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
+ R + IS+E T A L +AE L ++++ + + +TLKLKT
Sbjct: 235 VKAERERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHD 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
F + TR++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 293 FRIITRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|71756025|ref|XP_828927.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834313|gb|EAN79815.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 155/297 (52%), Gaps = 17/297 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPG+I K+CP L+ +P DF Y S+ R++ +YDPNF + LDE L+++ + R
Sbjct: 184 MPGYIGLKVCPNLLILPPDFDAYNEESNTVRRIVAEYDPNFTSLGLDELTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTREDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + GIGKVTE +L+ + GI T ++ + LC +F+ T F L +G+
Sbjct: 304 TYVRDLGLRSVPGIGKVTEALLKGL-GITTLSDIYNRRVELCYIFTEKTYCFLLGASIGI 362
Query: 178 -----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL 226
S + RKS+ ERTF ++K L + + + +++K L
Sbjct: 363 MQWPDMCSILGASIDDGTGVGRKSVGCERTFKTFQNKEELQEMVDFLVDYSYDELKKHEL 422
Query: 227 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLR 281
R ++LK++ S+ + L +Y S + + L+ A +RL+G+R
Sbjct: 423 MCRQVSLKIRWNSYRHQQYTKNLTQYSDDSATLRRAVDELMLPHAAKYSEMRLLGVR 479
>gi|407853254|gb|EKG06320.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 604
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 148/297 (49%), Gaps = 16/297 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I KLCP L+ VPTDF Y + + R + YDPNF + LDE +++T ++
Sbjct: 208 MPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQH 267
Query: 61 -GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
G++ +A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L R VM
Sbjct: 268 PGMTAGNVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHDLRLRTRQDVME 327
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 177
F+ LP+R + GIG+ TE IL + GIN E+ + LC + + T F L +G+
Sbjct: 328 FMKDLPVRTVPGIGRSTESILHGL-GINLLGEIYDRRVELCYILTEKTFCFLLGSSMGVV 386
Query: 178 ---------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 228
G T +A RKSI ERTF + L + + +++
Sbjct: 387 RWMDADTNDGGERTTEAE-RKSIGMERTFRNLSSRLELQQIAHSALQTAHRRLEENEFFC 445
Query: 229 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVT 283
R + LK K ASF+V + L ++ E + + LL A+ LRL+G+R+
Sbjct: 446 RQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLRIADQYAFLRLVGVRLA 502
>gi|408823700|ref|ZP_11208590.1| DNA polymerase IV [Pseudomonas geniculata N1]
Length = 386
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 156/297 (52%), Gaps = 21/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYLD+TE
Sbjct: 80 MPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPK--- 136
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 137 --SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 192
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ LP+ ++ G+GKV E L GI TC ++ Q + S + G
Sbjct: 193 DAFLQPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARG 251
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + +SISSE TF+ ED L L + ++AE +K G T+ LK
Sbjct: 252 IDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWKATRKTERVGHTVVLK 309
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 310 LKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 365
>gi|397573824|gb|EJK48893.1| hypothetical protein THAOC_32274, partial [Thalassiosira oceanica]
Length = 571
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 175/365 (47%), Gaps = 72/365 (19%)
Query: 1 MPGFIARKLCPEL-------IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 53
MPGFI + L EL FV +DF Y S + + +YD SLDEAY+DI
Sbjct: 177 MPGFIGQVLVKELSGGSECLTFVKSDFKLYHSKSAEVKAILQEYDKTLKMCSLDEAYMDI 236
Query: 54 ----------TEVCRERGI-------------------SGIEIAE-------ELRTSVYE 77
TE R+ S +EI E +R V+
Sbjct: 237 ESYLDAYFSITEGDRDHAAITKRMSNSDDDRPPLQEMASILEIKEVTKNLLHSIRKRVHR 296
Query: 78 EAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTE 136
E GLTCSAG A N ++AK+ SD+NKPNGQ FV P++ + TF+S L +RK+ G+G++ E
Sbjct: 297 ETGLTCSAGTASNFMIAKIASDMNKPNGQVFVGPSEE-EIRTFLSPLSVRKVCGVGRILE 355
Query: 137 HILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL----------GSTNTPQAR 186
LR G+ T ++ K + + +F +TA F L V +G G ++
Sbjct: 356 KFLRATLGVVTVADLYAKRAEVNFLFKPATAQFLLRVSIGYSEDSRRESEGGERGDDESA 415
Query: 187 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRA 246
RK +S ERTF T+ + L KL IA L+ D+Q +GL+ RT+ LK+K A+F + TR
Sbjct: 416 QRKGMSGERTFQPTDTWSDLCVKLESIATRLAKDIQSKGLKPRTIGLKVKLANFNLLTRT 475
Query: 247 VTLQKYI------SSSEDILKHASVLL-----------KAELPVSLRLIGLRVTQFNEDK 289
T Q + S++ ++ A LL K + +RL+G+R + F ++
Sbjct: 476 NTRQVALFQQAGDGSTQTLVDIAVKLLRDVKRAFVEEHKDKAGFMVRLLGVRCSNFRLER 535
Query: 290 VRAPS 294
PS
Sbjct: 536 ETQPS 540
>gi|326386774|ref|ZP_08208395.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
gi|326208827|gb|EGD59623.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
Length = 380
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 153/291 (52%), Gaps = 11/291 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCPEL+FVP F Y S VF Y P SLDEAYLD+T R
Sbjct: 70 MPSTRAARLCPELVFVPPRFDVYRAVSRQIHAVFRDYTPLVEPLSLDEAYLDVTADLRGI 129
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE +R + E GLT SAGV+ N+ LAK+ SD NKP+G V+ A F+
Sbjct: 130 G-SATRIAEIIRQRIRAETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRPGEGA--DFV 186
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLG 178
+ LP+ + GIG + + GI T ++ +G L + H + AD+ G+
Sbjct: 187 AGLPVARFHGIGPRGAERM-EALGIRTGADL--RGVELAVLRKHFGAQADYLFRAARGID 243
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ ERTF R+ L +I E++ A + K G+ GRT+TLKLKT
Sbjct: 244 LRSVEPDRPRKSVGGERTFDRDLSSGTALREALDKITEIVWARIVKAGVHGRTVTLKLKT 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ F+ TRA + + ++ ++ + LL A LP+ +RL+GL ++ +
Sbjct: 304 SDFQAITRARSFARPVADQDEFARAGRELLDALLPLPQPIRLMGLTLSGLD 354
>gi|410030700|ref|ZP_11280530.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Marinilabilia sp. AK2]
Length = 358
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 158/290 (54%), Gaps = 11/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A C +L+FV F +Y S+ R++F Y SLDEA+LD+TE +
Sbjct: 59 MSGKLAALKCSKLVFVKPRFDRYKELSNQIREIFYDYTDLVEPLSLDEAFLDVTE-NKVN 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+E+R + EE GL SAG++ N+ LAK SDINKPNGQ +LP + A F
Sbjct: 118 NPSATLIAQEIRDRIKEEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEA---F 174
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ LPI K GIGKVT ++ + GI+ ++ Q L F S FF ++ G+
Sbjct: 175 LEKLPIEKFFGIGKVTAEKMKSI-GIHNGHDLKQFSLQYLTKKFGKSGLHFF-NIVRGIH 232
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+S+E TF D+ L EI E L + + G++GRT+TLK+K
Sbjct: 233 LSEVQPNRIRKSLSAENTFEKDLSDRVSFEAALLEIFEELKRRINRTGIKGRTVTLKIKY 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 286
+ F ++TR+ T ++Y + I + LL+ E L + +RL G+ ++ N
Sbjct: 293 SDFTIQTRSKTFEQY-PEEQKIWETVMDLLQQETLALPVRLFGIGLSNLN 341
>gi|300022279|ref|YP_003754890.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
gi|299524100|gb|ADJ22569.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
Length = 360
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 162/295 (54%), Gaps = 15/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CPELIFV F Y S R +F +Y SLDEAYLD+T R
Sbjct: 61 MPSTTAIRQCPELIFVQPRFDAYRAVSQQIRAIFARYTDVIEPLSLDEAYLDVT--ANPR 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + + A E+R + E GLT SAGV+ N+ LAK+ SD+ KPNGQ+V+P R A F
Sbjct: 119 GLPTASDTATEIRACILSETGLTASAGVSYNKFLAKLASDMRKPNGQYVIPPQRGA--EF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLG 178
I++LP++K GIG VT + + GI T ++ Q L F S A ++ ++ G
Sbjct: 177 IATLPVKKFHGIGPVTAAKM-NALGIQTGADLRSQSIEFLQRQFGKSGA-WYYAIARGED 234
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKS SE TFS ED+ + + + E+A+ + A +K G T T+K+
Sbjct: 235 DRPVEPNRPRKSSGSETTFS--EDRVIPAEIEAGVLEMADDVWAWCEKNQSFGATATVKI 292
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNED 288
K A F + TR+ T + I+S E + + + L+++ PV+ +RL+G+ V+ F+ +
Sbjct: 293 KYADFRIVTRSRTASRPITSRELLHETSLALVRSIYPVAIGIRLVGVSVSNFSSN 347
>gi|56160432|gb|AAV80830.1| polymerase kappa isoform 4 [Homo sapiens]
Length = 461
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 227
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|294507553|ref|YP_003571611.1| DNA polymerase IV [Salinibacter ruber M8]
gi|294343881|emb|CBH24659.1| DNA polymerase IV [Salinibacter ruber M8]
Length = 373
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 154/293 (52%), Gaps = 11/293 (3%)
Query: 2 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 61
P A + CP+LIFV Y S RK+ +Y SLDEAYLD+TE R
Sbjct: 75 PAVEADRKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRP 134
Query: 62 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 121
SG IA LR +YEE GLT SAGV P + +AKV SD++KP+G V+ D M FI+
Sbjct: 135 -SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQ--MEFIA 191
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 181
LPI K GIG VT +++ GI T ++ + F ++ +G
Sbjct: 192 QLPIEKFHGIGPVTAAKMQE-LGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRP 250
Query: 182 TPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +ERTF ED A + +L+ IAE ++ +++ +GRT+TLKLK+
Sbjct: 251 VQPDRDRKSVGAERTFP--EDIARAETMLERLSPIAERVAQRLRQANRKGRTVTLKLKSH 308
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
+V TR T+ + + + + ++ LL+ P+ +RL+G+ V+ E++
Sbjct: 309 DHQVSTRQTTVDRPLRAEDALMTITERLLRRPHPLDEPVRLLGISVSSLTEEE 361
>gi|294669256|ref|ZP_06734336.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308888|gb|EFE50131.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 354
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 153/299 (51%), Gaps = 29/299 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A++LCP+ +FVP +F+ Y S +F ++ SLDEAYLD+T + +
Sbjct: 58 MSAATAKRLCPQAVFVPPNFSLYRSVSRQIHGIFRRHTDLVEPLSLDEAYLDVT-LNHQN 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+IA +R + E GLT SAGVAPN+ LAK+ SD NKPNGQFVLP + V F+
Sbjct: 117 IPYASDIARSIRADILAETGLTASAGVAPNKFLAKIASDWNKPNGQFVLPPQK--VEAFL 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST---ADFFLSVG--- 174
+ LP+ KI G+GKVT ++ + G+NT ++ + HS A+ F G
Sbjct: 175 TGLPLGKIPGVGKVTRQKMQRL-GMNTVGDLRR----------HSPGELANLFGKWGYRL 223
Query: 175 --LGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 230
L G N P R R IS+E T AL+ R L +A+ L +Q R
Sbjct: 224 HDLAYGIDNRPVKAERERLQISTEITLPEDLPLALIVRHLPHLADDLWQQLQNRKTEARG 283
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLRVTQF 285
+TLKLKTA F + TR++T + S +L A+ L +P + RLIGL V
Sbjct: 284 VTLKLKTADFRIITRSLTYSSPLPDSAALLS-AARELAGRIPHASDIDYRLIGLGVGHL 341
>gi|443243201|ref|YP_007376426.1| DNA polymerase IV, damage-inducible protein [Nonlabens dokdonensis
DSW-6]
gi|442800600|gb|AGC76405.1| DNA polymerase IV, damage-inducible protein [Nonlabens dokdonensis
DSW-6]
Length = 349
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 163/293 (55%), Gaps = 10/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV + F +Y S R++F Y SLDEAYLD+TE +
Sbjct: 48 MPSVTAKRLCPDLIFVKSRFDRYREVSAQIREIFHDYTDLVEPLSLDEAYLDVTENKYDF 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
+ I IA E+R +YE G+T SAG++ N+ +AK+ SD NKPNGQ ++P + + +
Sbjct: 108 PSATI-IAYEIRRRIYETTGITASAGISVNKFIAKIASDYNKPNGQKTIVPEEIIEFLEE 166
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ RK GIGKVT + FGI T +++ +K L F S + ++ + G+
Sbjct: 167 LEI---RKFHGIGKVTAEKMYQ-FGIFTGKDLKRKSLEFLVENFGKSGSHYY-KIVRGIH 221
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +ERTFS + + +L +IAE + + K + G+T+TLK+K
Sbjct: 222 KSPVKPDRIRKSLGAERTFSENISSEVFMKERLIQIAEEIEKRIAKSDVSGKTVTLKIKY 281
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 289
F+ +TR+ TL +I + IL A L++ E S+RL+G+ ++ N K
Sbjct: 282 RDFKTQTRSKTLPYFIRDKQTILNTAIELMEQESFRESVRLLGITLSNLNTGK 334
>gi|30048187|gb|AAH50718.1| POLK protein [Homo sapiens]
Length = 472
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 227
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|256379783|ref|YP_003103443.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
gi|255924086|gb|ACU39597.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
Length = 430
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 158/292 (54%), Gaps = 10/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+L P +F+P DFTKY S ++F + P SLDEA+LD+ R
Sbjct: 82 MPTAHARRLAPHAVFLPPDFTKYRDVSRGVMELFRQVTPLVEPLSLDEAFLDVGGALRRL 141
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ EIA +R V E G+TCS GVA + LAK+ S + KP+G V+P DR + F+
Sbjct: 142 RATPAEIAARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKPDGLMVVPKDR--ALEFL 199
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
LP+ + G+GK T L D G+ T ++ L L + A+ + L G
Sbjct: 200 HPLPVGALWGVGKRTAEQL-DRLGLETVGDVAAAPLLRLRKAVGVALAEHLYA--LARGH 256
Query: 180 TNTPQARF--RKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ P + KSI +E TF V D+A+L +L ++E +A ++ +GLRGRT+++K++
Sbjct: 257 DDRPVVPYTREKSIGAEETFEVDHFDRAVLKLELLRLSERTAASLRAKGLRGRTVSIKVR 316
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNE 287
A F TR+ TL+ + ++ A+ LL +P ++RLIG+RV Q +E
Sbjct: 317 FADFTTITRSKTLRVATDVAREVYATATSLLDDHVPPGAVRLIGVRVEQLSE 368
>gi|424877132|ref|ZP_18300791.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164735|gb|EJC64788.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 375
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 160/298 (53%), Gaps = 10/298 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 77 MPSVTAKRKCPDLIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGM 136
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
++ EIA E+R + E GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F
Sbjct: 137 EVA-TEIALEIRAKIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---F 192
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T ++ GI T ++ K + +F + G+
Sbjct: 193 VEALPVKKFHGVGPATAERMKR-HGIETGLDLKSKSLAFLQQNFGKSGPYFYGIARGVDE 251
Query: 180 TNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF +D L +L +AE + + + G+T+T+K+K +
Sbjct: 252 RRVRPDRIRKSVGAEDTFVEDIDDLDLAKAELRPLAEKVWRYCEAHDITGKTVTVKIKYS 311
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN-EDKVRAP 293
F TR+ T+ +S + +L++A LL + P S+RL+G+ ++ N E+ +AP
Sbjct: 312 DFSQATRSRTMAGSVSDVDMVLENAETLLASVFPFKRSVRLLGITLSSLNTEESEQAP 369
>gi|389872202|ref|YP_006379621.1| DNA polymerase IV [Advenella kashmirensis WT001]
gi|388537451|gb|AFK62639.1| DNA polymerase IV [Advenella kashmirensis WT001]
Length = 354
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 160/293 (54%), Gaps = 22/293 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
AR+LCP I++ +FT Y S R +F +Y SLDEAYLD+T +GI S
Sbjct: 62 ARELCPHAIYIAPNFTLYREVSRQVRGIFQQYTDRIEPLSLDEAYLDVT--VNHKGIASA 119
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
E+A ++ ++ E LT SAGVAPN+ LAK+ SD NKPNG V+P R VM+F+ LP
Sbjct: 120 TEVARRIQEDIFRETSLTASAGVAPNKFLAKIASDWNKPNGICVVPPSR--VMSFLQDLP 177
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF-SHSTADFFLSVGLGLGSTNTP 183
+ KI G+G+VT + + L+ L F ++ F L+ G+ L +T
Sbjct: 178 LEKIPGVGRVTLAKFHRLQMKTIADLRLRSEWELTHHFGAYGHRLFELARGIDLREVDTN 237
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR----GRTLTLKLKTAS 239
Q + IS+E TF D+ L Y +L + + ++ + ++ LR GRT+TLKLK+AS
Sbjct: 238 QQ--SQQISTETTF----DRDLPYLQLQDPLDAIARKLWEQVLRKRKFGRTVTLKLKSAS 291
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-----LRLIGLRVTQFNE 287
F + TR+ T + S +++ +HA+ L A L RLIGL ++ F E
Sbjct: 292 FRIVTRSQTYSNPLYSVDEV-RHAAATLLARLEADKRHTLYRLIGLGISAFAE 343
>gi|402831592|ref|ZP_10880272.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
gi|402281665|gb|EJU30292.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
Length = 366
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 157/288 (54%), Gaps = 6/288 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G AR+LCP+LIFV F +Y S R +F +Y SLDEAYLD+T +
Sbjct: 57 MAGTTARQLCPQLIFVKPRFERYREISMQIRTIFYEYTDLVEPLSLDEAYLDVT-TNKMD 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+++R ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +P + V+ F+
Sbjct: 116 MPSATLIAQQIRAKIFEQTGLTASAGISINKFIAKIASDYNKPNGQKTVPPEE--VLDFL 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ L I+K GIGKVT + GI T ++ K + + ++F + G+ +
Sbjct: 174 AQLDIKKFYGIGKVTAQKMYQK-GIFTGADLRAKTLEELQEYFGNNGEYFYQIARGIHLS 232
Query: 181 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KSI E TF + + L ++ E ++ + K+ L +T+TLKLK +
Sbjct: 233 PVQPFRLVKSIGVEHTFETNISSEIFMEEPLKKLCEEVAQRLAKKQLLAKTVTLKLKYSD 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 286
F+ +TR+ TL ++ S I + S LL E L S+RL+G+ ++ FN
Sbjct: 293 FKQQTRSRTLIDFVGDSATIYQVISELLYQERLRESVRLLGVSLSHFN 340
>gi|56160428|gb|AAV80828.1| polymerase kappa isoform 2 [Homo sapiens]
Length = 489
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 227
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>gi|329893969|ref|ZP_08269988.1| DNA polymerase IV [gamma proteobacterium IMCC3088]
gi|328923368|gb|EGG30686.1| DNA polymerase IV [gamma proteobacterium IMCC3088]
Length = 361
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV F Y S R++F +Y SLDEAYLD+T+ R
Sbjct: 48 MPSVTAQRLCPDLIFVKARFDVYRSVSAQIREIFSRYTDVIEPLSLDEAYLDVTQDKRGV 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
G S ++IA +R S+YEE LT SAG++ N+ +AK+ SD NKPNGQ VLP++ A F
Sbjct: 108 G-SAVKIAHMIRKSIYEELNLTASAGISYNKFIAKIASDQNKPNGQCVVLPDEGEA---F 163
Query: 120 ISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ LP+R+ G+G K E + R + T ++ A S+AD+ G+
Sbjct: 164 VGQLPVRRFYGVGPKTAEKMAR--LNLQTGADIRACSLAFLAENFGSSADYLYKASRGVD 221
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKS+ +ERT+ ED + L + IAE + QK G +G+T TLK+
Sbjct: 222 HRPVRPNRIRKSVGAERTY--PEDLSQLESLREAVVSIAEEVWVRSQKNGCQGKTATLKI 279
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 283
K F+ TRA++L S ++ + LL+ E P+ +RL+G +++
Sbjct: 280 KFNDFQQITRAMSLDHLFGSEAELREVLLGLLQKEWPLRRPVRLVGAQLS 329
>gi|16119697|ref|NP_396403.1| DNA polymerase IV [Agrobacterium fabrum str. C58]
gi|22095614|sp|Q8UJK7.2|DPO42_AGRT5 RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
gi|15162281|gb|AAK90844.1| DNA polymerase IV [Agrobacterium fabrum str. C58]
Length = 357
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+LIFVP F Y S R +F +Y SLDEAYLD+TE +
Sbjct: 56 MPSVTAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGM 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 116 EIA-TEIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L ++K G+G T + FGI T ++ K A + +F + G+
Sbjct: 172 VEQLAVKKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TFSV D L +L +AE + + + + G+T+T+K+K +
Sbjct: 231 RQVRPDRIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYS 290
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
F TR+ T ++ ++IL+ AS LL P S+RL+G+ ++ D+
Sbjct: 291 DFTQATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQ 343
>gi|56160430|gb|AAV80829.1| polymerase kappa isoform 3 [Homo sapiens]
Length = 371
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 227
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 362
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 62 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 121
>gi|335037525|ref|ZP_08530830.1| DNA polymerase IV [Agrobacterium sp. ATCC 31749]
gi|333790976|gb|EGL62368.1| DNA polymerase IV [Agrobacterium sp. ATCC 31749]
Length = 365
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+LIFVP F Y S R +F +Y SLDEAYLD+TE +
Sbjct: 64 MPSVTAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 124 EIA-TEIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L ++K G+G T + FGI T ++ K A + +F + G+
Sbjct: 180 VEQLAVKKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDE 238
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TFSV D L +L +AE + + + + G+T+T+K+K +
Sbjct: 239 RQVRPDRIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYS 298
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
F TR+ T ++ ++IL+ AS LL P S+RL+G+ ++ D+
Sbjct: 299 DFTQATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQ 351
>gi|254525120|ref|ZP_05137175.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
gi|219722711|gb|EED41236.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
Length = 364
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 157/297 (52%), Gaps = 21/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE
Sbjct: 59 MPALRAERLCPDAIFVPPDFARYKAVSRQVREIFLRHTDLVEPLSLDEAYLDVTEPK--- 115
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 116 --SGIELATDIARTIREQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 171
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F++ LP+ ++ G+GKV E L GI TC ++ Q + S + G
Sbjct: 172 EAFLTPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARG 230
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + +SISSE TF+ ED L L + ++AE +K G T+ LK
Sbjct: 231 VDERPVEADQQVQSISSEDTFA--EDLLLEDLSEAIVQLAEKTWNATRKTERVGHTVVLK 288
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T + S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 289 LKTAQFRILTRSFTPDRPPDSMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|71411335|ref|XP_807921.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70872021|gb|EAN86070.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 597
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 148/297 (49%), Gaps = 16/297 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG+I KLCP L+ VPTDF Y + + R + YDPNF + LDE +++T ++
Sbjct: 201 MPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSVGLDELTMEVTAYLQQH 260
Query: 61 -GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
G++ ++A E R V+ E LT SAG+ P LAK+ S+ KPNGQ L R VM
Sbjct: 261 PGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKPNGQHELRLRTREDVME 320
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 177
F+ LP+R + GIG+ TE IL IN E+ + LC + + T F L +G+
Sbjct: 321 FMKDLPVRTVPGIGRSTESILHG-LDINLLGEIYDRRVELCYILTEKTFCFLLGSSMGVV 379
Query: 178 ---------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 228
G T +A RKSI ERTF + L + + +++ L
Sbjct: 380 RWMDADTNDGIERTTEAE-RKSIGMERTFRNLSSRLELQQIAHSALQTAHRRLEENELVC 438
Query: 229 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVT 283
R + LK K ASF+V + L ++ E + + LL A+ LRL+G+R+
Sbjct: 439 RQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDELLLRIADQYAFLRLVGVRLA 495
>gi|338740349|ref|YP_004677311.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
gi|337760912|emb|CCB66745.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
Length = 361
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 164/295 (55%), Gaps = 15/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A + CP+LIFVP F Y S R++F +Y P F SLDEAYLD+TE R
Sbjct: 61 MASTTALRQCPDLIFVPPRFEVYRAISRQIREIFAEYTPLFEPLSLDEAYLDVTENLR-- 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + + A E+R+ ++ E GLT SAGV+ N+ LAK+ SD++KPNGQFV+P R A F
Sbjct: 119 GLPTAADTATEIRSRIFSETGLTASAGVSYNKFLAKLASDMHKPNGQFVIPPQRGA--EF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
I +L ++K G+G VT L + GI T ++ Q L F S ++ ++ G
Sbjct: 177 IEALAVKKFHGVGPVTAEKL-NTLGIYTGADLRAQSLEFLQQHFGKS-GGWYYAIARGED 234
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKS SE TF ED+ L + + E+A+ + +K G T+T+K+
Sbjct: 235 DRPVEPNRPRKSSGSETTFP--EDRFLPAEIEEGVLEMADDVWVWCEKNRSFGATVTVKI 292
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNED 288
K F++ TR+ T+ I++ + + + L+++ PVS +RL+G+ V++F D
Sbjct: 293 KYTDFQIITRSRTVTAPIATHDRLRDISLSLVRSVYPVSKGIRLVGVAVSKFVSD 347
>gi|21750080|dbj|BAC03714.1| unnamed protein product [Homo sapiens]
Length = 372
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 3/174 (1%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R A M F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAGMDF 255
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+ + L L
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKKKYLPL 368
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 62 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 121
>gi|224060808|ref|XP_002300272.1| predicted protein [Populus trichocarpa]
gi|222847530|gb|EEE85077.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 124/208 (59%), Gaps = 23/208 (11%)
Query: 331 IDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHE--------- 381
+++ E S S++ E +Y DP+ N+L DLN +C+ ++ + E EKIHE
Sbjct: 1 MNNMEGSFSIESHELQHYGIRDPLASNNLEDLNVHHCTSTDSV-EAEKIHEPSSNKIADK 59
Query: 382 -------NEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDD 434
EVSQ E + Q EG D + +V N+ SS QKD+ +W+DD
Sbjct: 60 VITKDMAGEVSQWKESGLSLPGQLEGGSPDRMNQV----IMHNEAVFSSEQKDELVWVDD 115
Query: 435 YKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHR 494
YKCSLCG EMPP F EERQEHSDFHLAERLQK+ES D R R+R V Q+DHI+S
Sbjct: 116 YKCSLCGIEMPPYFDEERQEHSDFHLAERLQKDESRIDSRTSALRQRSV--QKDHISSQS 173
Query: 495 KRKKQKLFEKEGTHIPIDMFFAKRNRNF 522
KRKK+K KEG H+ IDMFFAK N NF
Sbjct: 174 KRKKRKPSPKEGGHLSIDMFFAKSNLNF 201
>gi|296283336|ref|ZP_06861334.1| DNA polymerase IV [Citromicrobium bathyomarinum JL354]
Length = 401
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 156/293 (53%), Gaps = 11/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV + F Y SD R +F + SLDEAYLD+T +
Sbjct: 94 MPSVTAKRLCPDLIFVKSRFDAYREASDQIRAIFRHHTDLVEPLSLDEAYLDVT--VNKL 151
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
GI S ++A+ +R + + LT SAGV+ N+ LAK+ SD NKP+G V+ P + A
Sbjct: 152 GIASATQVAQMIRQEIRAKTRLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGAA--- 208
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ +LPIR+ G+G E + + GI T ++ K + A S D+ G+
Sbjct: 209 FVQTLPIRRFHGVGPRGEEKMARL-GIATGADLAAKDAAWLAQHFGSFGDYLYRAARGID 267
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ ERTFSV +A R L EI +++ +++ RGRT+TLKLK
Sbjct: 268 DRPVRANRIRKSVGGERTFSVDRHEAEELRTTLDEIVDIVWERIERAQARGRTVTLKLKY 327
Query: 238 ASFEVRTRAVTLQKYISSSEDI--LKHASVLLKAELPVSLRLIGLRVTQFNED 288
F++ TRA +L + ++ + + HA + LP +RL+GL ++ D
Sbjct: 328 NDFQLMTRARSLPRNVADKAEFAAIGHAILDELLPLPRPIRLMGLTLSNLERD 380
>gi|261381373|ref|ZP_05985946.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
gi|284795651|gb|EFC50998.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
Length = 352
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 152/285 (53%), Gaps = 11/285 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ +FV F Y S VF +Y SLDEAYLD+T+ E
Sbjct: 63 AKRLCPQAVFVQPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTQNF-ENIPYAS 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+ SLP+
Sbjct: 122 EVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--IMAFLESLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT + + G+ T ++ ++G LL + + L+ G+
Sbjct: 180 GKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERPVKAE 238
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
+ R + IS+E T A L +AE L ++++ + + +TLKLKT F +
Sbjct: 239 RERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHDFRII 296
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
TR++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 297 TRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|424666909|ref|ZP_18103934.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
gi|401069578|gb|EJP78099.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
Length = 364
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 156/297 (52%), Gaps = 21/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYLD+TE
Sbjct: 59 MPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPK--- 115
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 116 --SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 171
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F++ LP+ ++ G+GKV E L GI TC ++ Q + S + G
Sbjct: 172 DAFLAPLPVNRVPGVGKVMEGKL-AARGIATCGDLRQWALIDLEEAFGSFGRSLYNRARG 230
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + +SISSE TF+ ED L L + ++A +K G T+ LK
Sbjct: 231 IDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLK 288
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 289 LKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|332667689|ref|YP_004450477.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
gi|332336503|gb|AEE53604.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
Length = 358
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 160/293 (54%), Gaps = 11/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +AR+LCPE++FV + F Y S R +F Y SLDEAYLD+TE ++
Sbjct: 56 MSGGMARRLCPEIVFVRSRFDVYRSVSYQIRDIFLDYTDLVEPLSLDEAYLDVTE-NKKN 114
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTF 119
S IA+E+R + E GLT SAGV+ N+ LAK+ SDINKPNG + + P + +A F
Sbjct: 115 MTSATLIAQEIRKRIEAETGLTASAGVSFNKFLAKIASDINKPNGIKVITPEEAIA---F 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + K G+GKVT + ++ GI T ++ Q+ F ++ + +
Sbjct: 172 LEQLAVEKFHGVGKVTARKMHNM-GIYTGGDLKQRSEADLVRFFGKAGRYYYRIVRAEDN 230
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKSI +ERTF+ D ++ KL ++AE + M K GRT+TLKLK+
Sbjct: 231 REVNPHRIRKSIGAERTFNEDVSDPEIMKNKLTDLAEGVHRYMDKTQNFGRTVTLKLKSP 290
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGLRVTQFNED 288
F++ TR+ + I + +++++ LL E P+ +RL+G+ ++ ++
Sbjct: 291 DFKILTRSRSFASEIRNLDELIRIVHDLLDQHIEEAPI-VRLLGVTLSNLEKE 342
>gi|159901912|gb|ABX10645.1| DNA-directed DNA polymerase IV [uncultured planctomycete 3FN]
Length = 384
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 166/296 (56%), Gaps = 12/296 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+ +F+PT Y S R++F ++ P +LDEA+LD+T R
Sbjct: 55 MPAATAKRLCPQGVFLPTRMPHYVDVSCQIREIFGRFTPLVEPLALDEAFLDVTGSSRLF 114
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G EI ++T++++E L S G+APN+ LAK+ SD++KP+G FV+ N + A+ F+
Sbjct: 115 GPPE-EIGRTIKTAIHDELQLVASVGIAPNKFLAKLASDLDKPDG-FVVVNPK-AIHAFL 171
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLG 178
LP+ ++ G+GK L D+ GI ++ L + S L F S +L + G+
Sbjct: 172 DPLPVTRLWGVGKAAARKL-DLIGIQHIAQLRALPRES-LADNFGASGDQLWL-LANGID 228
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R KSIS E TF+V +D L LA++ E ++ ++ LRGRT+ LK++
Sbjct: 229 DRDVIPDRDAKSISHETTFAVDVDDMERLRGVLAQLTEQVARRVRAAELRGRTVQLKIRY 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRVTQFNEDKV 290
+ F+ TR+ L + +++I + A +L LP +++RL+G+ V+Q + K+
Sbjct: 289 SDFQTYTRSTKLSQPTDVTDEIWQAAQSMLATRLPERTLAVRLLGIGVSQLDRSKL 344
>gi|406892189|gb|EKD37611.1| hypothetical protein ACD_75C01070G0002 [uncultured bacterium]
Length = 370
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 155/292 (53%), Gaps = 7/292 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP IFV ++Y S ++F +Y P SLDEAYLD+T V
Sbjct: 60 MPCAKAARLCPNAIFVRPRMSRYKEISVKIMEIFHQYTPLVEPLSLDEAYLDVT-VNNSN 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +AE++R ++ E LT SAGV+ N+ LAKV SDINKPNG +P D+ + F+
Sbjct: 119 NPSATLLAEKIRRHIFRELQLTASAGVSFNKFLAKVASDINKPNGITTIPPDK--ALEFL 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+SLPIRK G+GK TE + + GI T E+ Q FF + G+ +
Sbjct: 177 ASLPIRKFHGVGKATERKMHQL-GITTGYELRQWREDQLIRHFGKYGSFFHDIVRGIDNR 235
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI E T + T+D + LA++AE L + K + G LTLK++
Sbjct: 236 PVEPQRIRKSIGCETTLATDTDDIGTINAILADLAEELDHSLGKRRIGGYNLTLKVRYLD 295
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDK 289
F +R++T++ + +S DIL LL A S +RL+GL +++ ++K
Sbjct: 296 FITISRSITVKTPLFTSADILPLLPTLLHATAAGSRKIRLLGLSLSKLVDEK 347
>gi|255536316|ref|YP_003096687.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
gi|255342512|gb|ACU08625.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
Length = 360
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 151/272 (55%), Gaps = 11/272 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG +A + CP LI V F +Y S R +F +Y SLDEAYLD+TE ++
Sbjct: 58 MPGRLALEKCPHLIVVKPRFQRYKEISQQIRSIFNEYTDLVEPLSLDEAYLDVTE--NKK 115
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S +IA E+R +YEE GLT SAG++ N+ LAKV SD NKPNGQ + + ++ F
Sbjct: 116 GIESANDIAREIRGRIYEETGLTASAGISVNKFLAKVASDYNKPNGQKTIHPTQ--ILEF 173
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGL 177
+ LPI K GIGKVT + + ++ + L+ SL L +F S +++ +V G+
Sbjct: 174 MEELPIEKFYGIGKVTANKMHEMHIFKGAD--LKNKSLEELIRLFGKS-GNYYYNVVRGI 230
Query: 178 GSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
++ R +KS++ E TF D+ ++ +L I+E L + K+ ++G+++TLK+K
Sbjct: 231 HNSEVKPHRIQKSVAVEETFWDNLLDEEQVFAQLKTISEELEERLLKKEIKGKSITLKIK 290
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLK 268
F TR+ T Y + D + A L +
Sbjct: 291 YKDFTQYTRSTTRDSYFGGAHDFFETARKLWE 322
>gi|456737807|gb|EMF62484.1| DNA polymerase IV [Stenotrophomonas maltophilia EPM1]
Length = 364
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 156/297 (52%), Gaps = 21/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYLD+TE
Sbjct: 59 MPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPK--- 115
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 116 --SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 171
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F++ LP+ ++ G+GKV E L GI TC ++ Q + S + G
Sbjct: 172 DAFLAPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARG 230
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + +SISSE TF+ ED L L + ++A +K G T+ LK
Sbjct: 231 IDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLK 288
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 289 LKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|289577475|ref|YP_003476102.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
gi|289527188|gb|ADD01540.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
Length = 389
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 159/292 (54%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++ARKLCP IF+ +Y S + P S+DEAYLD+T++ +
Sbjct: 57 MPMYMARKLCPHGIFLSVRRKRYEEVSKQIFDILYSITPLVEPVSIDEAYLDVTDIDKNP 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ IA+E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + +
Sbjct: 117 EV----IAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITEDMIP--DIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
LP+ K+ GIG+ +E L+ + GINT ++L+ L +F + +L + G+
Sbjct: 171 KPLPVSKVYGIGEKSEERLKSM-GINTIGDLLKLSQENLVEIFGKVGVEIYLRIR-GIDE 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI E+T T+DK LL ++++S ++ + GL RT+T+K+KT+
Sbjct: 229 RPVETMREIKSIGKEKTLEKDTKDKKLLLHYAKLFSDIISEELFRAGLYARTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDK 289
F + T++ TL KYI SEDI A ++ +L +RLIGL V+ + K
Sbjct: 289 DFAIHTKSKTLNKYIRLSEDIYNVAYEIIENIKLDQYIRLIGLSVSNLSAVK 340
>gi|390958702|ref|YP_006422459.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
gi|390413620|gb|AFL89124.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
Length = 370
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 164/308 (53%), Gaps = 20/308 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCPE +FVP DFT+Y S R +F ++ SLDEAYLD+T +
Sbjct: 61 MPAVRAERLCPEAVFVPPDFTRYKAVSHAVRAIFERHTDAIEPLSLDEAYLDVT-TNKTS 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
+ IA+ +R +Y+E LT SAG+APN+ LAK+ SD KPNGQFV+ P++ F
Sbjct: 120 LPTATLIAKSIRQQIYDELNLTASAGIAPNKFLAKIASDWRKPNGQFVIQPHE---AEEF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG-LGLG 178
+ +LP+ +I G+GKVTE + + GI ++ ++ A + L + L G
Sbjct: 177 LRTLPVGRIPGVGKVTEARMAEA-GIKLVGDIY---AMSLATLEQHFGSYSLRLHELARG 232
Query: 179 STNTPQA--RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ P R RK +S+E TF ED L L + +AE + + R +T+ LK
Sbjct: 233 IDHNPVVSNRVRKQVSAEDTFP--EDLPLTELEAHVCRLAEKVWKASEGNARRAKTVVLK 290
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN-EDKV 290
LKT F TR++T + +S+ ED++ A L + +LP RL+G+ +T F D
Sbjct: 291 LKTKEFNSLTRSLTPRTPVSTCEDLISTALGLRDRVDLPAQQLYRLVGVGLTNFELRDDS 350
Query: 291 RAPSDPTQ 298
A S+P +
Sbjct: 351 VADSEPAE 358
>gi|58039310|ref|YP_191274.1| DNA polymerase IV [Gluconobacter oxydans 621H]
gi|81557124|sp|Q5FSM8.1|DPO4_GLUOX RecName: Full=DNA polymerase IV; Short=Pol IV
gi|58001724|gb|AAW60618.1| DNA polymerase IV, damage-inducible protein P [Gluconobacter
oxydans 621H]
Length = 356
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 151/290 (52%), Gaps = 9/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCPEL+FVP F Y S +F +Y P SLDEAYLD+T+
Sbjct: 58 MPSVTAKRLCPELLFVPARFDVYRSVSAQIHDIFSRYTPLIQPLSLDEAYLDLTDHLGAY 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S +A+ +R ++ E GLT SAGV+ NR LAK+ SD KP+G FV+ M F+
Sbjct: 118 G-SATLVADRIRADIHAETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPAMGP-EFV 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
++LP+ GIG +R GI T ++ ++ A F+ + G+
Sbjct: 175 AALPVDAFHGIGPAMARKMR-ALGIETGADLRERDIETLTRHFGKAATFYYGISRGIDHR 233
Query: 181 NTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E+T+ +T + A ++ L +IA L Q+ L+ RT+TLK+K A
Sbjct: 234 PVVVNRERKSLGTEQTYLRDLTSE-ADAHQALTQIAATLWGSAQRRQLQARTVTLKVKYA 292
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F TRA TL + S E +L+ L+ P +RL+GL ++ F+
Sbjct: 293 DFRQITRARTLSAPVPSEEVLLETGQSLMAPLFPFVPGVRLLGLTLSGFH 342
>gi|194364233|ref|YP_002026843.1| DNA polymerase IV [Stenotrophomonas maltophilia R551-3]
gi|226738241|sp|B4SIF5.1|DPO4_STRM5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|194347037|gb|ACF50160.1| DNA-directed DNA polymerase [Stenotrophomonas maltophilia R551-3]
Length = 356
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 158/297 (53%), Gaps = 21/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE
Sbjct: 59 MPAVRAERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTEPK--- 115
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SG+E IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 116 --SGMELATDIARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 171
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ LP+ ++ G+GKV E L GI TC ++ Q + S + G
Sbjct: 172 DAFLLPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARG 230
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + +SISSE TF+ ED L L + ++AE +K G T+ LK
Sbjct: 231 VDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWNATRKTERVGHTVVLK 288
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ ++ F +
Sbjct: 289 LKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPADTRYRLVGVGLSGFRD 344
>gi|386716938|ref|YP_006183264.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
gi|384076500|emb|CCH11081.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
Length = 364
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 162/300 (54%), Gaps = 27/300 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE
Sbjct: 59 MPALRAERLCPDAIFVPPDFARYKAVSRQVREIFLRHTDLVEPLSLDEAYLDVTEPK--- 115
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 116 --SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 171
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV--- 173
F+ LP+ ++ G+GKV E L GI TC + L++ SL+ + F S+
Sbjct: 172 DAFLLPLPVNRVPGVGKVMEGKL-AARGIVTCGD-LRRWSLVD--LEEAFGSFGRSLYNR 227
Query: 174 GLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTL 231
G+ + +SISSE TF+ ED L L + ++AE +K G T+
Sbjct: 228 ARGIDERPVEPDQQVQSISSEDTFA--EDLLLEDLGEAIVQLAEKTWNATRKTERVGHTV 285
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKLKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 286 VLKLKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|83814230|ref|YP_445661.1| DNA polymerase IV [Salinibacter ruber DSM 13855]
gi|83755624|gb|ABC43737.1| putative DNA polymerase IV [Salinibacter ruber DSM 13855]
Length = 373
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 153/293 (52%), Gaps = 11/293 (3%)
Query: 2 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 61
P A + CP+LIFV Y S RK+ +Y SLDEAYLD+TE R
Sbjct: 75 PAVEADRKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRP 134
Query: 62 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 121
SG IA LR +YEE GLT SAGV P + +AKV SD++KP+G V+ D M FI+
Sbjct: 135 -SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQ--MEFIA 191
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 181
LPI K GIG VT +++ GI T ++ + F ++ +G
Sbjct: 192 QLPIEKFHGIGPVTAAKMQE-LGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRP 250
Query: 182 TPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +ERTF ED A + +L+ IAE ++ +++ +GRT+TLKLK+
Sbjct: 251 VQPDRDRKSVGAERTFP--EDIARAETMLDRLSPIAERVAQRLRQANRKGRTVTLKLKSH 308
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
+V TR T+ + + + + ++ LL+ P +RL+G+ V+ +++
Sbjct: 309 DHQVSTRQTTVDRPLRAEDALMTITERLLRRPHPPDEPVRLLGISVSSLTDEE 361
>gi|167038401|ref|YP_001665979.1| DNA polymerase IV [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167038865|ref|YP_001661850.1| DNA polymerase IV [Thermoanaerobacter sp. X514]
gi|256751141|ref|ZP_05492023.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300913550|ref|ZP_07130867.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307723435|ref|YP_003903186.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|320116805|ref|YP_004186964.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853105|gb|ABY91514.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
gi|166857235|gb|ABY95643.1| DNA-directed DNA polymerase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256750047|gb|EEU63069.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300890235|gb|EFK85380.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307580496|gb|ADN53895.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|319929896|gb|ADV80581.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 389
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 159/289 (55%), Gaps = 11/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++ARKLCP IF+ +Y S + P S+DEAYLD+T++ +
Sbjct: 57 MPMYMARKLCPHGIFLSVRRKRYEEVSAQIFDILYSITPLVEPVSIDEAYLDVTDIDKNP 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I IA E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + +
Sbjct: 117 EI----IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITED--MIPDIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
LP+ K+ GIG+ +E L+ + GINT ++L+ L +F + +L + G+
Sbjct: 171 KPLPVSKVYGIGQKSEERLKSM-GINTIGDLLKLSQENLVEIFGKVGVEIYLRIR-GIDE 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI E+T T+DK LL R ++++S ++ +E L RT+T+K+KT+
Sbjct: 229 RPVETMREIKSIGKEKTLEKDTKDKKLLLRYAKLFSDIISEELFRERLYARTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 286
F V T++ TL KYI EDI A ++++ +L +RLIGL V+ +
Sbjct: 289 DFTVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGLSVSNLS 337
>gi|297543787|ref|YP_003676089.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841562|gb|ADH60078.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 389
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 159/292 (54%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++ARKLCP IF+ +Y S + P S+DEAYLD+T++ +
Sbjct: 57 MPMYMARKLCPHGIFLSVRRKRYEEVSKQIFDILYSITPLVEPVSIDEAYLDVTDIDKNP 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ IA+E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + +
Sbjct: 117 EV----IAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITEDMIP--DIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
LP+ K+ GIG+ +E L+ + GINT ++L+ L +F + +L + G+
Sbjct: 171 KPLPVSKVYGIGEKSEERLKSM-GINTIGDLLKLSQENLVEIFGKVGVEIYLRIR-GIDE 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI E+T T+DK LL ++++S ++ + GL RT+T+K+KT+
Sbjct: 229 RPVETMREIKSIGKEKTLEKDTKDKKLLLHYAKLFSDIISEELFRAGLYARTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDK 289
F + T++ TL KYI SEDI A ++ +L +RLIGL V+ + K
Sbjct: 289 DFAIHTKSKTLNKYIRLSEDIYNVAYEIIENIKLDQYIRLIGLSVSNLSAVK 340
>gi|383317865|ref|YP_005378707.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Frateuria aurantia DSM 6220]
gi|379044969|gb|AFC87025.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Frateuria aurantia DSM 6220]
Length = 370
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 160/297 (53%), Gaps = 22/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP +FVP DF +Y S +++F ++ SLDEAYLD+T
Sbjct: 57 MPAMRAERLCPTAVFVPPDFARYKRVSGQVQEIFNRHTDLVEPLSLDEAYLDVTTNTLAL 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S ++A +R +++EE GLT SAGVAPN+ LAK+ SD NKP+G +V+ R V+ F+
Sbjct: 117 P-SATQVARMIRAAIHEETGLTASAGVAPNKFLAKIASDWNKPDGLYVIRPSR--VLEFL 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL---SVGLGL 177
S LP+ K+ G+GKV E LRD GI +++ ++ S + L + +G+
Sbjct: 174 SGLPVGKLPGVGKVMESRLRD-LGIQRVDQLRER---TVDQLERSFGRWGLRLHQLSMGI 229
Query: 178 GSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGLRGRTLT 232
+ R RK IS+E TF +D+ L R+LAE A S +++ T+
Sbjct: 230 DESAVMPHRVRKQISTEDTFP--DDRRLDQLDTPVRQLAERA--WSTAVRQAMSHPHTIV 285
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN 286
LKLKT F +R+ TL S+ DI++ A +L+ + LP RL+G+ +T F
Sbjct: 286 LKLKTHDFINLSRSQTLPSPPRSAADIIEVAKMLMNRVTLPADTRYRLVGIGLTGFK 342
>gi|383451945|ref|YP_005358666.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
gi|380503567|emb|CCG54609.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
Length = 359
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 160/292 (54%), Gaps = 8/292 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G A +LCPEL FV F +Y S R +F +Y SLDEAYLD+TE ++
Sbjct: 61 MSGVQAARLCPELTFVRPRFDRYKEISKQIRAIFLEYTDLVEPLSLDEAYLDVTE-NKKG 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+E+R ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ + D V FI
Sbjct: 120 NPSATLIAKEIRQKIFEKTGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDE--VEAFI 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
L ++K GIGKVT + + GI T ++ K L F +S F+ ++ G+
Sbjct: 178 EVLDVKKFYGIGKVTAEKMYQL-GIYTGLDLKNKTLEYLEQHFGNSGQAFY-NLSRGISY 235
Query: 180 TNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KSI +ERTF+ + + +L IA + ++K + G+T+TLK+K +
Sbjct: 236 SQVKPNRQMKSIGAERTFNENLSSEIYMEERLENIASEIERRIKKYKISGKTITLKIKYS 295
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 289
F +TR+ TL +I+ I++ A LL E L S+RL+G+ + N ++
Sbjct: 296 DFTQQTRSKTLPYFIADKSLIMETAKELLYQERLKDSVRLLGISLNNLNTNQ 347
>gi|222149470|ref|YP_002550427.1| DNA polymerase IV [Agrobacterium vitis S4]
gi|221736453|gb|ACM37416.1| DNA-damage-inducible protein [Agrobacterium vitis S4]
Length = 385
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 154/293 (52%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 87 MPSVTAKRKCPDLIFVPPRFDVYRQVSHQIREIFAEYTPLIEPLSLDEAYLDVTENLKGM 146
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F
Sbjct: 147 EIA-TEIALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---F 202
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP+++ G+G T ++ GI T ++ K + +F + G+
Sbjct: 203 VEALPVKRFHGVGPATAERMQR-HGIETGLDLKSKSLQFLQTHFGKSGSYFYGIARGIDE 261
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF D R +L +AE + + ++G+T+T+K+K +
Sbjct: 262 RQVRADRIRKSVGAEDTFVEDIDDLDPARAELRPLAEKVWRYCESHDIKGKTITVKIKYS 321
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
F TR+ T+ Y+S + I+ A LL + P +RL+G+ ++ N ++
Sbjct: 322 DFSQATRSKTVAGYVSDIDMIMGIAEPLLASVFPFKHPVRLLGITLSSLNTEE 374
>gi|190572635|ref|YP_001970480.1| DNA polymerase IV [Stenotrophomonas maltophilia K279a]
gi|226738242|sp|B2FLR2.1|DPO4_STRMK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|190010557|emb|CAQ44166.1| putative DNA-damage-inducible protein p [Stenotrophomonas
maltophilia K279a]
Length = 364
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 156/297 (52%), Gaps = 21/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYLD++E
Sbjct: 59 MPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVSEPK--- 115
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 116 --SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 171
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F++ LP+ ++ G+GKV E L GI TC ++ Q + S + G
Sbjct: 172 DAFLAPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARG 230
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + +SISSE TF+ ED L L + ++A +K G T+ LK
Sbjct: 231 IDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLK 288
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 289 LKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|296117372|ref|ZP_06835962.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769]
gi|295976138|gb|EFG82926.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769]
Length = 397
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 151/286 (52%), Gaps = 7/286 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IAR+ CPEL+FVP F Y S ++F +Y P SLDEAYLD+T R
Sbjct: 77 MPSVIARRKCPELVFVPPRFDVYRAVSARIHQIFARYTPLIQPLSLDEAYLDVTHPLLPR 136
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S EIA E+R ++ E GL SAGV+ N+ LAK+ SD KP+G +V+ A F+
Sbjct: 137 G-SATEIAREIRATIRAETGLCASAGVSYNKFLAKLASDHRKPDGLYVITPRHGA--EFV 193
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP+ + GIG T + GI+T ++ + A A F+ V G+
Sbjct: 194 ADLPVERFHGIGPATAARM-HALGIHTGRDLRARTLEDLARHFGKVAAFYHGVARGVDHR 252
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ +ERTF + + + + ++ + + ++ L GRT+T+K+K
Sbjct: 253 PVESDRPRKSLGTERTFEHDLYEWSDMAAPMTDMCQRVWHGCERRDLTGRTVTIKIKYND 312
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 283
F RA TL + +++++++ HA LL+ P +RL+G+ V+
Sbjct: 313 FRQIVRASTLMQPVATAQELSAHALGLLRGCFPPERGVRLLGVVVS 358
>gi|398382571|ref|ZP_10540656.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sphingobium sp. AP49]
gi|397726677|gb|EJK87110.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sphingobium sp. AP49]
Length = 364
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 165/290 (56%), Gaps = 17/290 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+LCP+L+FV F Y S R +F ++ SLDEAYLD+T+ +
Sbjct: 63 MPGARARRLCPDLLFVKPRFEVYRAVSAQIRAIFGRFTDMVQPLSLDEAYLDVTQ--NKP 120
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
GI S +A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ P + A
Sbjct: 121 GIASATLVAQEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPDGLCVVRPAEGAA--- 177
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGL 177
F++ +P+R+I GIG VT + + GI T ++ + S L A F S+A F+ G
Sbjct: 178 FMAGMPVRRIHGIGPVTAERMHKL-GIQTGADLRDRDLSFLQAQFG-SSALFYYRAARGE 235
Query: 178 GSTNTPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + RKS+S E TF VTE+ L +++ IA+ L + K GRT+ LK
Sbjct: 236 DDRPVHERQERKSVSVEDTFLEDLVTEEA--LVQEINRIADNLWNRIDKAQAYGRTVVLK 293
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRV 282
+K A F + TR+ + + S E +++ LL+A+LP+ + RL+GL V
Sbjct: 294 VKFADFRIITRSRSFTAPVRSLEQLMETGRGLLRAQLPLRIGARLLGLGV 343
>gi|334318683|ref|YP_004551242.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
gi|334099110|gb|AEG57119.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
Length = 378
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 156/299 (52%), Gaps = 9/299 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE +
Sbjct: 80 MPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGL 139
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEE+RT + E LT SAGV+ N+ LAK+ SD KP+G FV+ R F+
Sbjct: 140 RLA-TEIAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKRGP--EFV 196
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 197 QALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDER 255
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI +E TF D L + + + + G+RG+T+TLK+K A
Sbjct: 256 EVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWAD 315
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDP 296
F TR+ T+ I+S ++ + A +LL PV +RL+G VT + DKV S+P
Sbjct: 316 FTQITRSKTIVAPIASVAEMSEIAELLLSPIFPVPKGIRLLG--VTLSSLDKVDDRSEP 372
>gi|421862800|ref|ZP_16294504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379710|emb|CBX21699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 352
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 156/286 (54%), Gaps = 19/286 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 --QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R R IS+E ++ ED L L +AE L + ++ + +++TLKLKT
Sbjct: 235 VEAERERLQISTE--ITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYD 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 282
F + TR +T + +L+ A +L K P + RLIG+ V
Sbjct: 293 FRIITRTLTYSSVLPDCASLLQAAQMLTKRVPPQTEDAFRLIGIGV 338
>gi|393773805|ref|ZP_10362197.1| DNA polymerase IV [Novosphingobium sp. Rr 2-17]
gi|392720746|gb|EIZ78219.1| DNA polymerase IV [Novosphingobium sp. Rr 2-17]
Length = 373
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 154/291 (52%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+L+F F Y S R +F Y P+ SLDEAYLD+T +
Sbjct: 72 MPSARAVRLCPDLVFCKPRFEVYREVSQQIRAIFLDYTPHVEPLSLDEAYLDVTADLKGI 131
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G S IA+E+R + E GLT SAGV+ N+ +AK+ SD NKP+G V+ P D A F
Sbjct: 132 G-SATRIAQEIRRRIRAETGLTASAGVSYNKFIAKLASDENKPDGLCVIRPGDGAA---F 187
Query: 120 ISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGL 177
+++LP+R+ G+G + E + R GI T ++ K + L A F S A++ G+
Sbjct: 188 VAALPVRRFHGVGPRGAEKMAR--LGIETGADLASKDLAFLRANFG-SFAEYLFRAARGV 244
Query: 178 GSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ ERT F D L + I +++ +++ RGRT+TLKL+
Sbjct: 245 DLRQVRADRPRKSVGGERTFFENIVDPVALRETMDHIVDVVWERIERSQARGRTVTLKLR 304
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
A F+ TRA +L +++ + LL E+P+ +RL+GL ++
Sbjct: 305 YADFQTLTRARSLPHFVADKAEFAALGHALLDEEMPLPQPIRLMGLTLSAL 355
>gi|261334856|emb|CBH17850.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
Length = 571
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 159/301 (52%), Gaps = 24/301 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN++ LDE L+++ + R
Sbjct: 184 MPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYIVVGLDELTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTREDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ GI T ++ + LC + ++ F L +G+
Sbjct: 304 TYVRDLGLRSVPGVGKVTEALLKG-LGITTLGDIHDRRVELCYILHNNLFRFLLGASIGI 362
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+F V K L+ + I E +M++
Sbjct: 363 MQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEMIYSIFEEAYEEMRQNE 422
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR-----LIGL 280
+ R ++L ++ +S+ + +L ++ S + + LL LP + + L+G+
Sbjct: 423 MLCRQISLLVRWSSYRYQQYTKSLIQHSDDSATLRRAVDGLL---LPHAAKYSEMCLLGV 479
Query: 281 R 281
R
Sbjct: 480 R 480
>gi|294502105|ref|YP_003566170.1| DNA polymerase IV, damage-inducible protein P [Salinibacter ruber
M8]
gi|294342089|emb|CBH22754.1| DNA polymerase IV, damage-inducible protein P [Salinibacter ruber
M8]
Length = 393
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 162/304 (53%), Gaps = 34/304 (11%)
Query: 2 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 61
P A + CP LIFVP Y S R++ +Y SLDEAYLD+TE ++
Sbjct: 90 PAVEADRQCPGLIFVPPRMEVYQEESRRIREILRRYTDVIEPLSLDEAYLDVTE-PKKGP 148
Query: 62 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFI 120
SG +A +R +Y+E GLT SAGV P++ +AKV SD +KP+G V+ P ++ + FI
Sbjct: 149 PSGTLVARRIREEIYQETGLTASAGVGPSKFVAKVASDRDKPDGLTVIRPEEQ---LDFI 205
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGI-------NTCEEMLQKGSLLCAVFSHSTADFFLSV 173
+ LP+ GIG VTE ++++ GI +T E+ L++ F F
Sbjct: 206 AGLPVGDFHGIGPVTEEKMQEM-GIESGAGLQDTPEKALRR------RFGKRGGHFKK-- 256
Query: 174 GLGLGSTNTP--QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG---- 225
L +G + P R KS+ +ERTFS ++E K +L R L IAE ++ + G
Sbjct: 257 -LAMGEDDRPVQPDRESKSVGAERTFSEDISEPKEMLSR-LEPIAERVAGRLGSAGPEGT 314
Query: 226 -LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 282
+RGRT+TLKLK+ EV TR TL++ I S E +++ A LL P +RL+GL V
Sbjct: 315 PVRGRTVTLKLKSHDHEVSTRQTTLRRAIRSEEALMRLAKWLLSRPHPPEEPVRLLGLSV 374
Query: 283 TQFN 286
+
Sbjct: 375 SSLT 378
>gi|294948988|ref|XP_002785996.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
gi|239900104|gb|EER17792.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
Length = 585
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 178/357 (49%), Gaps = 51/357 (14%)
Query: 1 MPGFIARKLCPE--------------------LIFVPTDFTKYTYYSDLTRKVFCKYDPN 40
MPGFIAR+LC L F P D +Y S + + Y P
Sbjct: 64 MPGFIARELCRRQGVELRLEGPSGVVVMMEGGLRFKPVDMPRYQAASKIFKDTVSLYGPM 123
Query: 41 FMAASLDEAYLDITEVCRERG-----ISGIEIAEELRTSVYEE-----AGLTCSAGVAPN 90
M SLDEAY+DIT E IS +E A L + + EE +GLTCSAG+A
Sbjct: 124 KML-SLDEAYIDITAKVAEAAMVDESISEVEAASLLVSRMREEVCEKSSGLTCSAGIARG 182
Query: 91 RL-LAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCE 149
LAK+ SD+NKPNGQF++P ++ ++ S+PIRK+ G+G+V+E L GI+
Sbjct: 183 CFRLAKMASDVNKPNGQFMVPTTTQGMLEWLHSMPIRKLHGVGRVSERELSAGLGIHKVG 242
Query: 150 EMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR---KSISSERTFSVTEDKALL 206
+++ K + L S S + + +G+ A KSIS ER+ S + +
Sbjct: 243 DIIIKAAELLHAMSSSGGHWLIDAAMGVTDMEDVTAAAESGPKSISQERSLSTAKSGSAA 302
Query: 207 YRKLAEIAEMLSADM-----QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILK 261
Y L E+ E L + + +KE GR +T+KLKT ++V+ ++ TL++ + S + +
Sbjct: 303 Y--LHEVLEELCSQVMELCAEKEQY-GRCVTVKLKTFEWDVKQKSNTLKREVRSGRLLYE 359
Query: 262 HASVLLK---AELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIV 315
AS L+ A L +RL+G+RV+ F + P Q TL +F+ + AS V
Sbjct: 360 AASELMSTALATLKKPIRLLGVRVSSF---QTAVPQG--QSTLGDFLAAHKASSSRV 411
>gi|71756023|ref|XP_828926.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834312|gb|EAN79814.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 158/301 (52%), Gaps = 24/301 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPG+I K+CP L+ +P DF Y S+ R++ +YDPNF + LD+ L+++ + R
Sbjct: 184 MPGYIGLKVCPNLLILPPDFDAYNEESNTVRRIVDEYDPNFTSLGLDDLTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTRGDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ GI T ++ + LC + ++ F L +G+
Sbjct: 304 TYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFRFLLGASIGI 362
Query: 178 -------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+F V K L+ + I E +M++
Sbjct: 363 MQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEMIYSIFEEAYEEMRQNE 422
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR-----LIGL 280
+ R ++L ++ +S+ + +L +Y S + + LL LP + + L+G+
Sbjct: 423 MLCRQISLLVRWSSYRYQQYTKSLIQYSDDSATLRRAVDGLL---LPHAAKYSEMCLLGV 479
Query: 281 R 281
R
Sbjct: 480 R 480
>gi|365877904|ref|ZP_09417398.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442586482|ref|ZP_21005311.1| DNA polymerase IV [Elizabethkingia anophelis R26]
gi|365754447|gb|EHM96392.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442563801|gb|ELR81007.1| DNA polymerase IV [Elizabethkingia anophelis R26]
Length = 363
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 149/257 (57%), Gaps = 11/257 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP LIFV F +Y S R++F +Y SLDEAYLD+TE ++
Sbjct: 61 MPSKTAQQKCPNLIFVRPRFLRYKEISQQIRQIFYEYTDLVEPLSLDEAYLDVTE--NKK 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
GI S +IA E+R ++E+ GLT SAG++ N+ LAKV SDINKPNGQ + P + V++
Sbjct: 119 GIESANQIALEIRKKIFEKTGLTASAGISVNKFLAKVASDINKPNGQKTIHPQN---VLS 175
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGL 177
F+ LPI K GIGKVT + + + I +++ K L +F S ++ +V G+
Sbjct: 176 FLEELPIEKFYGIGKVTANKM-NTLSIYKGKDLKNKSLEELVLLFGKSGKHYY-NVVRGI 233
Query: 178 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R KS++ E TF D+ ++ K+ EI + L +++ G++G+TLTLK+K
Sbjct: 234 QYSEVKPHRIAKSVAVEETFWEDLLDEDTVFEKIDEITDELFRRLERSGIKGKTLTLKIK 293
Query: 237 TASFEVRTRAVTLQKYI 253
F + TR+ T +Y+
Sbjct: 294 YKDFTLFTRSKTESQYL 310
>gi|126640285|ref|YP_001083269.1| DNA polymerase IV [Acinetobacter baumannii ATCC 17978]
Length = 296
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 157/287 (54%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 6 ARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 64
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP+
Sbjct: 65 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPL 122
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 123 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 178
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 179 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 238
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 239 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 285
>gi|452751626|ref|ZP_21951371.1| DNA polymerase IV [alpha proteobacterium JLT2015]
gi|451960845|gb|EMD83256.1| DNA polymerase IV [alpha proteobacterium JLT2015]
Length = 362
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 149/278 (53%), Gaps = 16/278 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV + F Y S R++F ++ SLDEAYLD+T R
Sbjct: 63 MPSVTAQRLCPDLIFVKSRFDVYRSVSQQIREIFARHTDLIEPLSLDEAYLDVTASGR-- 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
EIA E+R + LT SAGV+ N+ LAK+ SD NKP+G V+ P++ A F
Sbjct: 121 --PATEIAREIRAEILSTTRLTASAGVSYNKFLAKLASDQNKPDGLCVIRPHEGAA---F 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
++ LP+++ G+G VT + + FGI T ++ K L F S AD++ G+
Sbjct: 176 VAGLPVKRFHGVGPVTAAKM-ERFGIRTGADLAAKSREWLQGNFGRS-ADYYYGAARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+R RKSI +ERTFS ED +A L L + E + + + G GRT+TLK+
Sbjct: 234 HRPVRASRVRKSIGAERTFS--EDFRTRADLLAALEPVIEAVWERIDRAGAAGRTVTLKI 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV 273
K A F+ TRA + + +S + LL+ ELPV
Sbjct: 292 KFADFQQITRARSFETPVSDRGMFTRIGHDLLERELPV 329
>gi|421540704|ref|ZP_15986846.1| DNA polymerase IV [Neisseria meningitidis 93004]
gi|402318254|gb|EJU53778.1| DNA polymerase IV [Neisseria meningitidis 93004]
Length = 352
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 155/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTHNFKNIPYAG- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>gi|407690031|ref|YP_006813615.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
gi|407321206|emb|CCM69808.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
Length = 378
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 153/291 (52%), Gaps = 11/291 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE +
Sbjct: 80 MPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGL 139
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEE+RT + E LT SAGV+ N+ LAK+ SD KP+G FV+ R F+
Sbjct: 140 RLA-TEIAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKRGP--EFV 196
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 197 QALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDER 255
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKT 237
R RKSI +E TF ED L A + ++ + G+RG+T+TLK+K
Sbjct: 256 EVKPDRIRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKW 313
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
A F TR+ T+ I+S ++ + A +LL PV +RL+G+ ++ +
Sbjct: 314 ADFTQITRSKTIVAPIASVAEMREIAELLLSPIFPVPKGIRLLGVTLSSLD 364
>gi|255068100|ref|ZP_05319955.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|340362974|ref|ZP_08685331.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|349610910|ref|ZP_08890230.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
gi|255047615|gb|EET43079.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|339886785|gb|EGQ76409.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|348615332|gb|EGY64854.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
Length = 352
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 154/287 (53%), Gaps = 15/287 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTHNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED +L L +AE L + ++ + + +TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLSLEQAAGHLPHLAEDLWRQIARKNVEAKGVTLKLKTHDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
+ TR++T + ++ +L A L++ P + RLIG+ V
Sbjct: 295 IITRSLTYSSVLPDTDALLCAAQTLMQRVPPQREDAFRLIGIGVNHL 341
>gi|419797103|ref|ZP_14322604.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
gi|385698791|gb|EIG29135.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
Length = 382
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 154/287 (53%), Gaps = 15/287 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 93 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTHNFKNIPYAS- 151
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 152 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 209
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 210 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 264
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED +L L +AE L + ++ + + +TLKLKT F
Sbjct: 265 VKAERERLQISTEITLPEDLSLEQAAGHLPHLAEDLWRQIARKNVEAKGVTLKLKTHDFR 324
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
+ TR++T + ++ +L A L++ P + RLIG+ V
Sbjct: 325 IITRSLTYSSVLPDTDALLCAAQTLMQRVPPQREDAFRLIGIGVNHL 371
>gi|71756015|ref|XP_828922.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834308|gb|EAN79810.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 497
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 157/298 (52%), Gaps = 18/298 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++ LD+ L+++ + R
Sbjct: 109 MPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGLDDFTLEVSAYIERF 168
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 169 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTRGDVM 228
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ + GI T ++ + LC + ++ F L +G+
Sbjct: 229 TYVRDLGLRSVPGVGKVTEALLKGL-GITTLSDIYNRRVELCYILHNNLFRFLLGASIGI 287
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+ + K + L + +M+K
Sbjct: 288 MQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMLDTVFNGAYEEMRKSE 347
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLR 281
L R ++L+++ AS+ + +L +Y S + + LL A + L+G+R
Sbjct: 348 LMCRRISLRIRWASYRYQQYTKSLIQYSDDSATLRRAVDGLLLPHAAKYSEISLLGVR 405
>gi|410465504|ref|ZP_11318750.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981467|gb|EKO38032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
Length = 394
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 153/289 (52%), Gaps = 6/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP +F+P + +Y+ S L ++ P AS+DEAY+DIT C+
Sbjct: 55 MPVSEAKRRCPHGVFLPGNRRRYSEVSRLVMATLGRFSPLVEPASIDEAYVDITG-CQTL 113
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+A ++ ++ E GL CS GVAP + +AK+ SD +KP+G ++ + + F+
Sbjct: 114 FGPPETMARAMKAAIREATGLPCSVGVAPVKFIAKIASDYDKPDGLTIVTPE--TALDFL 171
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+ KI G+GK E L + GI ++ + A + GS
Sbjct: 172 GPLPVSKIPGVGKRAEETLARL-GIRLVADIRRHEPEFLARHCGKWGLDLYNKAHARGSA 230
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KS+S+E TF T D+ +L L + AE + ++++EGLRGRT+T+KLK +
Sbjct: 231 VVSTDREAKSVSAENTFEADTADRDILAAWLLKQAERVGRELRQEGLRGRTVTIKLKFNT 290
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 287
F TR+ TL + +S I + A LL AE LP LRLIG+ V+QF E
Sbjct: 291 FRQITRSRTLAEPTASDSAIFETARALLNAEPLPNPLRLIGVGVSQFGE 339
>gi|220905578|ref|YP_002480890.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869877|gb|ACL50212.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 426
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 163/302 (53%), Gaps = 33/302 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +AR+LCP+ + V + +Y S + P AS+DEAY+D T + ER
Sbjct: 54 MPMVVARRLCPQAVIVRGRYQRYAELSHAIMSALKDFSPLVEPASVDEAYMDATGL--ER 111
Query: 61 GISGIE-IAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 118
+E + ++T + + GLTCS G AP + LAK+CSD+NKP+G F+L + M
Sbjct: 112 LFGPLEELVAGIKTRIVDVTGGLTCSVGAAPVKFLAKICSDVNKPDGVFILRQENMD--A 169
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF----FLSVG 174
F+ +LP+ +I G+GK T L+D+ G+ T ++ + FS DF F G
Sbjct: 170 FLCALPVGRIPGVGKRTVQSLQDL-GVRTVAQLRR--------FS---PDFMERRFGKWG 217
Query: 175 LGL-------GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGL 226
L L S R KS S+E TF+ T D+ L R L AE + + +++ G
Sbjct: 218 LALYERAQGRDSRKVETEREAKSESAECTFAEDTRDRDFLQRMLMAHAERVGSSLRRHGY 277
Query: 227 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQ 284
RGRT+TLK+K F TR+ TL++ +S++E I + LL AELP+ +RLIGL V+
Sbjct: 278 RGRTITLKVKFCDFRQITRSRTLEEAVSATETIFETGCRLL-AELPLPQPVRLIGLGVSG 336
Query: 285 FN 286
F+
Sbjct: 337 FD 338
>gi|418398635|ref|ZP_12972189.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
gi|359507493|gb|EHK80001.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
Length = 346
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 155/293 (52%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE +
Sbjct: 48 MPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGM 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ P A F
Sbjct: 108 QLA-TEIAEEIRARIRAETQLTASAGVSYNKFLAKIASDQRKPDGLFVITPKHGPA---F 163
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 164 VQALPVKKFHGVGPATAEKMKKL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDE 222
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLK 236
R RKS+ +E TF ED L A + ++ + G+RG+T+TLK+K
Sbjct: 223 REVKPNRIRKSVGAEDTFR--EDVHYLEAARAGLKPLIDKVWHYCEASGIRGKTVTLKVK 280
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNE 287
A F TR+ T+ I+S+ ++ + A +LL P + +RL+G+ ++ ++
Sbjct: 281 WADFTQITRSKTIVAPIASAAEMGEIAELLLSPIFPAAKGIRLLGVTLSSLDQ 333
>gi|445453449|ref|ZP_21445121.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
gi|444753425|gb|ELW78075.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
Length = 351
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 157/287 (54%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP+
Sbjct: 120 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 233
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 234 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 294 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|187478526|ref|YP_786550.1| DNA polymerase IV [Bordetella avium 197N]
gi|115423112|emb|CAJ49643.1| DNA polymerase IV [Bordetella avium 197N]
Length = 360
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 23/300 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A++LCP+ ++VP DF +Y S R++F ++ SLDEAYLD+T + G+ S
Sbjct: 65 AQRLCPDAVYVPPDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYLDVT--VNKLGLPSA 122
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
+AE +R + E GLT SAGVAPN+ LAK+ SD NKP+G FVL + V+ F+ LP
Sbjct: 123 TAVAEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKPDGLFVLRPAK--VLEFLQPLP 180
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL---SVGLGLGSTN 181
+RK+ G+G+VT+ L + GI+T ++ + A H L + GL
Sbjct: 181 VRKVPGVGRVTQARL-ESLGIHTVGDL---ATCAPAELEHHFGRHGLRLHELARGLDERE 236
Query: 182 TPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
+ + +S+E TF A L L +A + +K+G GRT LKLKT F
Sbjct: 237 VQPDQPLQQVSAENTFERDLRLADLGEALDRLAARVWEQARKKGQLGRTAVLKLKTDRFR 296
Query: 242 VRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNEDKVRAPSDPTQ 298
+ TR++TL + SS+E++ A L + +LP RL G+ ++ F +DP Q
Sbjct: 297 LLTRSLTLSQPPSSAEELAAIARRLCARVDLPAHTRYRLAGVGMSNF--------TDPAQ 348
>gi|169797618|ref|YP_001715411.1| DNA polymerase IV [Acinetobacter baumannii AYE]
gi|184156526|ref|YP_001844865.1| DNA polymerase IV [Acinetobacter baumannii ACICU]
gi|215484969|ref|YP_002327210.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|239502137|ref|ZP_04661447.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB900]
gi|260556426|ref|ZP_05828645.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|301510902|ref|ZP_07236139.1| DNA polymerase IV [Acinetobacter baumannii AB058]
gi|332851008|ref|ZP_08433143.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332865620|ref|ZP_08436453.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332875005|ref|ZP_08442852.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|384130174|ref|YP_005512786.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|403673120|ref|ZP_10935433.1| DNA polymerase IV [Acinetobacter sp. NCTC 10304]
gi|417554988|ref|ZP_12206057.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|417563117|ref|ZP_12213996.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|417577028|ref|ZP_12227873.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|417870856|ref|ZP_12515804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|417880013|ref|ZP_12524558.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|417884379|ref|ZP_12528580.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|421201172|ref|ZP_15658331.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|421456702|ref|ZP_15906040.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|421623016|ref|ZP_16063906.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|421627446|ref|ZP_16068256.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|421629411|ref|ZP_16070144.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|421634758|ref|ZP_16075369.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|421644682|ref|ZP_16085159.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|421647102|ref|ZP_16087533.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|421649774|ref|ZP_16090157.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|421658940|ref|ZP_16099167.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|421662434|ref|ZP_16102599.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|421673404|ref|ZP_16113344.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|421680541|ref|ZP_16120395.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|421687638|ref|ZP_16127358.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|421689691|ref|ZP_16129365.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|421695286|ref|ZP_16134895.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|421699297|ref|ZP_16138830.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|421791630|ref|ZP_16227802.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|421796731|ref|ZP_16232787.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|421802523|ref|ZP_16238472.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|421806537|ref|ZP_16242400.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|424061480|ref|ZP_17798969.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|424064969|ref|ZP_17802453.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|425749660|ref|ZP_18867631.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|445397472|ref|ZP_21429297.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|445462986|ref|ZP_21449183.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|445480792|ref|ZP_21455703.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|445487709|ref|ZP_21457924.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|169150545|emb|CAM88453.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AYE]
gi|183208120|gb|ACC55518.1| Nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
ACICU]
gi|193076069|gb|ABO10667.2| DNA polymerase IV [Acinetobacter baumannii ATCC 17978]
gi|213988136|gb|ACJ58435.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|260410481|gb|EEX03780.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|322506394|gb|ADX01848.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|332730291|gb|EGJ61615.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332735209|gb|EGJ66287.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332736815|gb|EGJ67795.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|342226754|gb|EGT91714.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|342226802|gb|EGT91760.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|342234417|gb|EGT99076.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|395525699|gb|EJG13788.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|395563204|gb|EJG24857.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|395570249|gb|EJG30911.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|400210406|gb|EJO41375.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|400391405|gb|EJP58452.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|404564254|gb|EKA69436.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|404565597|gb|EKA70761.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|404566300|gb|EKA71456.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|404571691|gb|EKA76742.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|404666357|gb|EKB34304.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|404673052|gb|EKB40856.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|408504675|gb|EKK06416.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|408512515|gb|EKK14156.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|408516896|gb|EKK18455.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|408693128|gb|EKL38740.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|408693899|gb|EKL39494.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|408701548|gb|EKL46975.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|408703781|gb|EKL49163.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|408709114|gb|EKL54373.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|408714774|gb|EKL59907.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|410386265|gb|EKP38738.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|410389456|gb|EKP41870.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|410398429|gb|EKP50648.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|410402559|gb|EKP54674.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|410414716|gb|EKP66512.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|410417717|gb|EKP69486.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|425488001|gb|EKU54342.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|444768127|gb|ELW92346.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|444771115|gb|ELW95248.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|444780511|gb|ELX04458.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|444784058|gb|ELX07889.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|452954105|gb|EME59509.1| DNA polymerase IV [Acinetobacter baumannii MSP4-16]
Length = 351
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 157/287 (54%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP+
Sbjct: 120 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 233
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 234 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 294 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|304317842|ref|YP_003852987.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779344|gb|ADL69903.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 378
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 174/301 (57%), Gaps = 19/301 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF-CKYDPNFMAA--SLDEAYLDITEVC 57
MP ++A+ LCP +F+P F +Y ++++KVF Y+ + S+DEAYLD+T++
Sbjct: 56 MPMYMAKTLCPHGVFLPVRFERY---REVSKKVFDILYEITNIVEPLSIDEAYLDVTDID 112
Query: 58 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 117
+ +IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+G V+ D V
Sbjct: 113 KNPE----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMVISED--MVP 166
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSV-GL 175
+ L + K+ GIG+ + L+ + GI +++L+ L +F + + + G+
Sbjct: 167 DILRPLSVSKVYGIGEKSSERLKKI-GIEKVDDLLKLSEEELTNIFGKYGKEIYDRIRGI 225
Query: 176 GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
L T R KSI E T T+D LL + L ++++S+++++E L RT+T+K
Sbjct: 226 DLRPVET--YRETKSIGKETTLKKDTDDIDLLSKYLKRFSKIISSELKEERLYCRTVTVK 283
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAP 293
+KT+ F V T++ TL +YI S EDI A+ +LK +++ +RLIGL V+ + +K++
Sbjct: 284 IKTSHFTVHTKSRTLNEYIDSPEDIYNVATAILKESKISQPVRLIGLSVSNLSRNKIKQL 343
Query: 294 S 294
S
Sbjct: 344 S 344
>gi|417548493|ref|ZP_12199574.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
gi|417566604|ref|ZP_12217476.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|395552276|gb|EJG18284.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|400388792|gb|EJP51864.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
Length = 351
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 157/287 (54%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP+
Sbjct: 120 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQGLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 233
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 234 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 294 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|384141455|ref|YP_005524165.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385235754|ref|YP_005797093.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|387125587|ref|YP_006291469.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|416150487|ref|ZP_11603372.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|417571512|ref|ZP_12222369.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|417874790|ref|ZP_12519632.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|421205151|ref|ZP_15662251.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|421536653|ref|ZP_15982890.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|421665373|ref|ZP_16105491.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|421670582|ref|ZP_16110574.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|421701851|ref|ZP_16141338.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|421705664|ref|ZP_16145086.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|424054052|ref|ZP_17791583.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|425754620|ref|ZP_18872477.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
gi|323516262|gb|ADX90643.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|333363953|gb|EGK45967.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|342227896|gb|EGT92804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|347591948|gb|AEP04669.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385880079|gb|AFI97174.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|395551960|gb|EJG17969.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|398325341|gb|EJN41519.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|404667538|gb|EKB35459.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|407195442|gb|EKE66575.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|407195695|gb|EKE66822.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|409985414|gb|EKO41630.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|410384422|gb|EKP36931.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|410390444|gb|EKP42833.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|425496514|gb|EKU62640.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
Length = 351
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 157/287 (54%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP+
Sbjct: 120 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 233
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 234 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 294 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|116254503|ref|YP_770339.1| DNA polymerase IV [Rhizobium leguminosarum bv. viciae 3841]
gi|115259151|emb|CAK10264.1| putative DNA polymerase [Rhizobium leguminosarum bv. viciae 3841]
Length = 370
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 154/293 (52%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 72 MPSVTAKRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGM 131
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F
Sbjct: 132 EIA-TEIALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---F 187
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T ++ GI T ++ K + +F + G+
Sbjct: 188 VEALPVKKFHGVGPATAERMKR-HGIETGLDLKSKSLAFLQQHFGKSGPYFYGIARGIDE 246
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF D L + +L +AE + + + G+T+T+K+K +
Sbjct: 247 RQVRPDRIRKSVGAEDTFVEDIDNFDLAKAELRPLAEKVRRYCEAHDITGKTVTVKIKYS 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
F TR+ T+ +S + +L+ A LL + P +RL+G+ ++ N ++
Sbjct: 307 DFSQATRSQTVSGAVSDVDQMLEIAETLLASVFPFKRPVRLLGVTLSSLNTEE 359
>gi|433469657|ref|ZP_20427074.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
gi|432202554|gb|ELK58614.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
Length = 352
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|342185958|emb|CCC95443.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 610
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 162/325 (49%), Gaps = 20/325 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+PGFI KLC L+ VP DF Y S + ++ +YDP+ ++ +DE L++++ +
Sbjct: 207 IPGFIGMKLCRNLVIVPPDFKAYRAESAIVHRIASEYDPDCVSVGMDELTLEVSDYLSRQ 266
Query: 61 G--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G ++ +++A ELR V+ E LT SAG+ P LAK+ S+ NKPNGQ+ L + R VM
Sbjct: 267 GGTMTAVDVATELRARVFRETQLTSSAGIGPTAALAKIASNYNKPNGQYELRLHTREDVM 326
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
++ LP+R GIGK E+ L+ INT ++ ++ LC V + F L +G+
Sbjct: 327 RYVRDLPLRAAPGIGKAMENTLKG-LDINTLGDIYERRVELCYVLTEKLYRFLLGNAIGV 385
Query: 178 GSTN----TPQARF--------RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
S P F RKS+ SER FS KA L I + + +++
Sbjct: 386 MSWPCSCVAPAYEFCDRTLITARKSVGSERAFSALCSKAELKEVATTIFQAVYDELRANE 445
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVT 283
R ++L+++ SF ++ +L ++ + + LL + S+RL+G+R+
Sbjct: 446 WVCRQVSLRIRWPSFRIQQFTKSLPQHSDDHSTLNRALGELLLPHVSYYASMRLLGIRLL 505
Query: 284 QFNEDK--VRAPSDPTQKTLTNFMT 306
K + QKTL+ F T
Sbjct: 506 DLVSKKEYLAKQRGGVQKTLSQFCT 530
>gi|384214582|ref|YP_005605746.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
gi|354953479|dbj|BAL06158.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
Length = 366
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 158/295 (53%), Gaps = 17/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE
Sbjct: 69 MPSVTAKRQCPDLIFVRPRFEVYKAISRQIRDIFAEHTPIIEPLSLDEAYLDVTE----- 123
Query: 61 GISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +A + +R + E GL SAG++ N+ LAK+ SD KPNGQFV+ D
Sbjct: 124 NLQGIPLARDVALLIREKIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPDMGP- 182
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGL 175
F+ +LP+ K GIG T + + G+ T ++ Q + A F S A ++ +
Sbjct: 183 -AFVETLPVGKFHGIGPATSAKM-NALGLFTGLDIRNQTLEFMNANFGKSGA-YYYWISR 239
Query: 176 GLGSTNTPQARFRKSISSERTFSVTEDK-ALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
G+ R RKSI +E TFS D+ L +L + + + + G RGRT+TLK
Sbjct: 240 GVDERPVRANRIRKSIGAETTFSTDLDEYGALAAELKPLVDKVWRHCETTGNRGRTVTLK 299
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNE 287
+K A FE+ TR+ ++ ++ +D+ + A LL+AE+P+ +RL+G+ ++ +
Sbjct: 300 IKFADFEIITRSRSVTAPVAGRDDLERLACGLLEAEMPLPKRVRLLGVSLSALQD 354
>gi|152979982|ref|YP_001355275.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille]
gi|151280059|gb|ABR88469.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille]
Length = 401
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 148/299 (49%), Gaps = 15/299 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KL P+ I +P DF Y +YS L ++ P+ +DE Y+D++E E
Sbjct: 102 AAKLAPDAILLPVDFDAYRHYSRLFKQAVADIAPHIENRGIDEIYIDLSEHAEETH---- 157
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ +V + GL+CS G+APN+LLAK+CSD+ KPNG +L +A T I LP
Sbjct: 158 ALASRIKNAVQQATGLSCSIGIAPNKLLAKICSDLEKPNGLTILTQADIA--TRIWPLPA 215
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
RKI GIG L G+NT EE+ +LL F S AD+ V G+
Sbjct: 216 RKINGIGPRAAEKL-TALGLNTIEELAGADATLLHEHFGRSYADWLGRVAQGIDERPVVT 274
Query: 185 ARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
KS+S E TF D+ L + E ++ D++++G GRT+ +KL+ A F
Sbjct: 275 YSEPKSVSRETTFENNLHAKRDREALGGIFTRLCERVAGDLERKGYVGRTVGIKLRFADF 334
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDPT 297
+ TR +TL Y + I + A LK +P+ RL+G+R+ DP
Sbjct: 335 RIVTRDLTLPAYTDDAVAIRQAAGECLK-RIPLDQPFRLLGVRIGTLARKDSLPAEDPV 392
>gi|385341648|ref|YP_005895519.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|385857505|ref|YP_005904017.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
gi|325201854|gb|ADY97308.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|325208394|gb|ADZ03846.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
Length = 352
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|260583597|ref|ZP_05851345.1| DNA polymerase IV [Granulicatella elegans ATCC 700633]
gi|260158223|gb|EEW93291.1| DNA polymerase IV [Granulicatella elegans ATCC 700633]
Length = 352
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 159/295 (53%), Gaps = 18/295 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ I VP +F +Y S R++F +Y P S+DEAYLD+TE + +
Sbjct: 57 MPTSKAIRLCPKAIIVPPNFERYRQLSLQIREIFHRYTPLVEPMSIDEAYLDVTENSKNQ 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ I IA E++ ++Y+E GLTCS GV+ N+ LAK+ S KP G V+ D+ + FI
Sbjct: 117 TSATI-IAREIQEAIYKEVGLTCSVGVSFNKFLAKIASGQRKPAGITVI--DQESFPEFI 173
Query: 121 SSLPIRKIGGIGKVTE---HILRDVFG---INTCEEMLQKGSLLCAVFSHSTADFFLSVG 174
+LP+ K G+G+ T H + + G +N +E L K F + V
Sbjct: 174 KTLPVEKFFGVGQATTKKLHQKKLLIGEDILNCSKEYLIK------YFGKQGEALYRQVR 227
Query: 175 LGLGSTNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
G + R RKS E T T D+ +L + + + +E +S ++K L +T+T+
Sbjct: 228 -GQSNDQLTLYRERKSYGKEETLLEDTTDEDVLQKYIEQFSEQISKWLKKNKLAAKTITI 286
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRVTQFNE 287
KLK + FE +TR+ TL+ Y+ S E + A LL + S+RLIGL V+QF +
Sbjct: 287 KLKQSDFETKTRSKTLETYVQSKEKLEIEAYHLLMEQYNNESVRLIGLTVSQFEQ 341
>gi|365857221|ref|ZP_09397216.1| putative DNA polymerase IV [Acetobacteraceae bacterium AT-5844]
gi|363716526|gb|EHL99927.1| putative DNA polymerase IV [Acetobacteraceae bacterium AT-5844]
Length = 364
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 158/312 (50%), Gaps = 24/312 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CPEL+FV F Y S +F +Y SLDEAYLD+TE +R
Sbjct: 65 MPSVTARRKCPELVFVKPRFDVYRAVSRQIHDIFARYTTLIQPLSLDEAYLDVTEPLLDR 124
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KP+G FV+ RM F+
Sbjct: 125 G-SATAIAEEIRAAIRAETGLTASAGVSYNKFLAKMASDHRKPDGLFVI-TPRMG-PAFV 181
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+L I K G+G T + + GI+ ++ Q+ D++ +V G+ +
Sbjct: 182 ETLAIGKFHGVGPATAAKM-NRLGIHNGHDLRQQTREFLQHHFGKAGDYYFNVARGVDNR 240
Query: 181 NTPQARFRKSISSERTFS----VTEDK----ALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
R RKS+ +E TF V ED A L+ K+ EI + K G GRT+T
Sbjct: 241 PVNPDRTRKSVGAETTFERDLIVWEDAVPAMAPLFSKVWEI-------VAKSGRGGRTVT 293
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKV 290
+K+K A F TR+ + ++S E + LL+ P +RL+G+ ++ F++D
Sbjct: 294 VKVKYADFRQITRSRSCAPPLASLEMFEEIGLELLRPVFPAPEGVRLLGVTISNFDDDTR 353
Query: 291 RAPSDPTQKTLT 302
S P Q LT
Sbjct: 354 ---SHPAQLALT 362
>gi|163856930|ref|YP_001631228.1| DNA polymerase IV [Bordetella petrii DSM 12804]
gi|163260658|emb|CAP42960.1| DNA polymerase IV [Bordetella petrii]
Length = 371
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 162/290 (55%), Gaps = 17/290 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP DF +Y S R++F ++ SLDEAYLD+T V ++ S
Sbjct: 65 AQRLCPDAVYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYLDVT-VNKQGLPSAT 123
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A +R+ + +E LT SAGVAPN+ LAK+ SD +KP+G FV+ + V+ F+ LP+
Sbjct: 124 DVARSIRSEILQETRLTASAGVAPNKFLAKIASDWDKPDGLFVIKPAQ--VLAFLQPLPV 181
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF-----LSVGLGLGST 180
RK+ G+GKV + L + G++T ++ + ++ H + LS G+
Sbjct: 182 RKVPGVGKVMQARL-EALGVHTVGDLARHTAV---ELEHHFGRYGIRLHELSQGIDRREV 237
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
P A ++ IS+E TF+V + L L +A + K+G GRT+ LKLKT F
Sbjct: 238 Q-PDAPLQQ-ISAETTFAVDQPLHALSEPLGRLAVKVWGQAVKKGAVGRTVVLKLKTDRF 295
Query: 241 EVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 287
+ TR +TL + +S+E + + A L + +LP RL G+ ++ F++
Sbjct: 296 RILTRTLTLTRAPTSAEALAEVAFQLCARVDLPAGTRYRLAGVGMSNFDD 345
>gi|305665931|ref|YP_003862218.1| DNA polymerase IV [Maribacter sp. HTCC2170]
gi|88710706|gb|EAR02938.1| DNA polymerase IV [Maribacter sp. HTCC2170]
Length = 366
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 156/290 (53%), Gaps = 10/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A++ CP L FV + +Y S R +F Y SLDEAYLD+T V ++
Sbjct: 62 MSGVMAKRNCPHLTFVKPRYNRYKEISKQIRNIFFDYTDLVEPLSLDEAYLDVT-VNKKG 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S IA+E+R + +E GL SAG++ N+ +AKV SD NKPNGQ V P + V+ F
Sbjct: 121 NPSATLIAQEIRKRIQDEVGLKASAGISVNKFVAKVASDFNKPNGQKTVNPEE---VLQF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ L IR G+GKVT + + GI T +E+ K L F S + + V G+
Sbjct: 178 LEDLEIRSFFGVGKVTAEKMYKL-GIFTGKELKTKSEEFLIENFGKSGSHYH-KVVRGIH 235
Query: 179 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R KS+ +ERTFS + + +L IA L + K + G+T+TLK+K
Sbjct: 236 NGAVKPHRVPKSVGAERTFSENLSSEIFMLERLEHIANELERRLSKTKIAGKTVTLKIKY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 286
+ F ++TR+ TL ++S+ IL+ A LL E + S+RL+G+ + N
Sbjct: 296 SDFTLQTRSKTLPYFVSNKSLILEVAKELLYQEKMENSVRLLGISLANLN 345
>gi|198284367|ref|YP_002220688.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666878|ref|YP_002427031.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248888|gb|ACH84481.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519091|gb|ACK79677.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 378
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 150/286 (52%), Gaps = 13/286 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
AR LCP+ +FV Y S + Y P SLDEA+LD+T + G+ +
Sbjct: 73 ARSLCPQAVFVRPRMDAYREASRQVMGILRCYTPLVEPLSLDEAFLDVTAATAD-GVLAV 131
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IA E+R + E GLT SAGV+ N+LLAK+ S+ KPNG FV+P + + F++ LP+
Sbjct: 132 RIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPPEHG--LAFLAPLPV 189
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
K+ G+G T L GI+T ++ +L A F + +F V G+ S
Sbjct: 190 GKLHGVGPATVKKL-SAMGIHTVLDLRNASREVLIAQFGKA-GLWFYEVARGIDSRPVQT 247
Query: 185 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
+R RKS+ ERTF ED ++ L ++A +SA +Q GL GRT+++K + FE
Sbjct: 248 SRQRKSVGYERTFPQNLEDPKVMLSTLRQMAGQVSARLQALGLAGRTVSIKARFPDFETV 307
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPVSL------RLIGLRVT 283
TRA T + I +E I+ LL +P SL RL+G+ V+
Sbjct: 308 TRAHTDAQAIWRTEAIIACLPGLLAKAIPASLPMHASVRLLGVTVS 353
>gi|261334859|emb|CBH17853.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 572
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 158/307 (51%), Gaps = 18/307 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++ LDE L+++ + R
Sbjct: 184 MPGFLALKICPNLLILPPDFDSYNEESNTVRRIVAEYDPNYISFGLDELTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTREDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ GI T ++ + LC + ++ F L +G+
Sbjct: 304 TYVRDLGLRSVPGVGKVTEALLKG-LGITTLGDIHDRRVELCYILHNNLFRFLLGASIGI 362
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+ + K + + + +M+K
Sbjct: 363 MQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSE 422
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRVT 283
+ R ++L+++ AS+ + +L +Y S + + LL A + L+G+R
Sbjct: 423 MMCRRISLRIRWASYRYQQYTKSLIQYSDDSATLRRAVDGLLLPHAAKYSEISLLGVRFL 482
Query: 284 QFNEDKV 290
KV
Sbjct: 483 DLISAKV 489
>gi|71756037|ref|XP_828933.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834319|gb|EAN79821.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 156/298 (52%), Gaps = 18/298 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++ LDE L+++ + R
Sbjct: 184 MPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGLDELTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ + LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGDTKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTREDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ GI T ++ + LC + ++ F L +G+
Sbjct: 304 TYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFRFLLGASIGI 362
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+ + K + + + +M+K
Sbjct: 363 VQWPDAATAANTENCEGATGGQRKAISSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSE 422
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLR 281
L R ++L+++ AS+ + +L +Y S + + LL A + L+G+R
Sbjct: 423 LMCRRISLRIRWASYRYQQYTKSLIQYSDDSATLRRAVDGLLLPHAAKYSEISLLGVR 480
>gi|340028073|ref|ZP_08664136.1| DNA-directed DNA polymerase [Paracoccus sp. TRP]
Length = 363
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 152/293 (51%), Gaps = 10/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+L+FV F Y S R +F +Y P SLDEAYLD+T+ + R
Sbjct: 63 MPSMRAMRLCPDLVFVKPRFDVYRAVSQQVRDIFFEYTPLVEPLSLDEAYLDLTDYLQGR 122
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ IA+E+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+P + A F+
Sbjct: 123 --TATRIAQEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPE--AGPEFV 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGS 179
LPI + GIG T + + GI T ++ Q L A F S ++ ++ G+ +
Sbjct: 179 HGLPIGRFHGIGPATAARM-ESHGILTGADLARQTLEFLTARFGKS-GTYYWNIARGIDT 236
Query: 180 TNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKSI +E T F D + L +A+ + G GRT+TLK+K
Sbjct: 237 REVKPNRIRKSIGAENTYFEDLRDLPAAHEALEVLADKVWRHATNAGRVGRTVTLKVKYG 296
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNEDK 289
F TRA +L + + S +++L A LL P +RL+G+ ++ +E +
Sbjct: 297 DFRQITRARSLPRPVESRDEMLGMARDLLGPVFADPHGVRLLGITLSGLDEAR 349
>gi|452852653|ref|YP_007494337.1| DNA polymerase IV [Desulfovibrio piezophilus]
gi|451896307|emb|CCH49186.1| DNA polymerase IV [Desulfovibrio piezophilus]
Length = 381
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 154/285 (54%), Gaps = 12/285 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
AR+LCP+++ VP +Y S + V ++ P AS+DEAYLD T + ER I
Sbjct: 53 ARQLCPQIVMVPVRMKRYKEISHMVMGVLKEFSPTVEQASVDEAYLDGTGL--ERLFGPI 110
Query: 66 E-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 123
E + E++ + + GLTCS G AP R LAK+ SD++KP+G F++ P+ V TF+ L
Sbjct: 111 ETVGSEIKKRMRQVTGLTCSVGAAPVRFLAKIASDMDKPDGMFIIHPHQ---VETFLRDL 167
Query: 124 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 182
P+RKI G+G K+ E + R + TC ++L K G+
Sbjct: 168 PVRKIPGVGKKLVETLAR--LRVQTCGDILHKERDFWVERLGKYGGALHDRARGIDPNGV 225
Query: 183 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
+ KS S+E TF T D+ L L E AE + AD+++ G +GRT+TLK+K F+
Sbjct: 226 IVSSGAKSCSAENTFHEDTTDRETLTTWLLEQAERVGADLRRHGYKGRTITLKIKYTDFK 285
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQF 285
TR+++L ++ I + A LL+ +L ++RLIG+ V+ F
Sbjct: 286 QVTRSLSLDTRTDTTSVIFETACTLLRQLDLRRAVRLIGVGVSNF 330
>gi|418936247|ref|ZP_13489976.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
gi|375056985|gb|EHS53180.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
Length = 359
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 153/293 (52%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 61 MPSVTARRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENRKGM 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F
Sbjct: 121 EIA-TEIALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---F 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T ++ GI T ++ K + +F + G+
Sbjct: 177 VEALPVKKFHGVGPATAERMKQ-HGIETGLDLKSKSLAFLQQHFGKSGPYFYGIARGIDE 235
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF D L + +L +AE + + + G+T+T+K+K +
Sbjct: 236 RRVRPDRIRKSVGAEDTFIEDIDNLDLAKAELRPMAEKVWRYCEAHDITGKTITVKIKYS 295
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
F TR+ T+ S + IL+ A LL + P +RL+G+ ++ N ++
Sbjct: 296 DFSQATRSKTVAGSFSDIDMILEIAETLLASVFPFKHPVRLLGITLSSLNTEE 348
>gi|341613645|ref|ZP_08700514.1| DNA polymerase IV [Citromicrobium sp. JLT1363]
Length = 380
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 11/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV + F Y S+ R +F + SLDEAYLD+TE +
Sbjct: 76 MPSVTAKRLCPDLIFVKSRFDAYREASEQIRTIFRHHTDLVEPLSLDEAYLDVTE--NKL 133
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
GI + ++A+ +R + + LT SAGV+ N+ LAK+ SD NKP+G V+ P + A
Sbjct: 134 GIAAATQVAQMIRQEIRAKTQLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGAA--- 190
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ +LPIR+ G+G E + + GI T ++ K A S ++ G+
Sbjct: 191 FVQTLPIRRFHGVGPRGEEKMARL-GIATGADLAAKDRAWLAQHFGSFGEYLYRAARGID 249
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKSI ERTFS +A R L EI E++ +++ RGRT+TLKLK
Sbjct: 250 ERPVRVNRIRKSIGGERTFSADRHEAEELRTTLDEIVEIVWERIERAQARGRTVTLKLKY 309
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNED 288
F++ TRA +L + + + +L++ LP+ +RL+GL ++ D
Sbjct: 310 NDFQLMTRARSLPRNVDGKVEFAALGHEILESLLPLPKPIRLMGLTLSNLERD 362
>gi|85709267|ref|ZP_01040332.1| DNA polymerase IV [Erythrobacter sp. NAP1]
gi|85687977|gb|EAQ27981.1| DNA polymerase IV [Erythrobacter sp. NAP1]
Length = 383
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 158/297 (53%), Gaps = 20/297 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV F Y S R++F + P+ SLDEAYLD+TE
Sbjct: 76 MPSVTAKRLCPDLIFVRHRFDAYKEASRQIRRIFEHHTPHVEPLSLDEAYLDVTE--DRL 133
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S IAE +R + + LT SAGV+ N+ LAK+ SD NKPNG V+ + A F
Sbjct: 134 GIGSATRIAELIRQEIRAKTKLTASAGVSYNKFLAKLASDQNKPNGLCVIRPGQGA--DF 191
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
++ LPIR+ G+G E ++ + GI T ++ K L A F S AD+ G+
Sbjct: 192 VAGLPIRRFHGVGPKAEEKMKRL-GIETGADLAAKDIEFLRANFG-SFADYLYRAARGID 249
Query: 179 STNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEML-----SADMQKEGLRGRT 230
R RKS+ ERTFS ED A L L I E++ +A + RGRT
Sbjct: 250 LRPVRAHRVRKSVGGERTFS--EDISSGAALRDTLENIIEIVWGRIENASKDDKPTRGRT 307
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQF 285
+TLK+K F++ +RA ++ +I ++ + + LL+ LP+ + RL+GL ++
Sbjct: 308 ITLKVKFTDFQIMSRAKSVPHWIEDKQEFARLSRELLEEALPLPMPIRLMGLTLSNL 364
>gi|385338282|ref|YP_005892155.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|433475868|ref|ZP_20433205.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|433513766|ref|ZP_20470555.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|433515222|ref|ZP_20471995.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|433518610|ref|ZP_20475345.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|433524427|ref|ZP_20481085.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|433528518|ref|ZP_20485127.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|433530726|ref|ZP_20487310.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|433532988|ref|ZP_20489550.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|433534767|ref|ZP_20491305.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
gi|319410696|emb|CBY91075.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|432208977|gb|ELK64948.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|432247075|gb|ELL02518.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|432251130|gb|ELL06502.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|432255018|gb|ELL10351.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|432258654|gb|ELL13935.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|432265319|gb|ELL20515.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|432265536|gb|ELL20728.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|432266344|gb|ELL21530.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|432271036|gb|ELL26166.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
Length = 352
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|408380616|ref|ZP_11178199.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
gi|407745470|gb|EKF57003.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
Length = 364
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 152/294 (51%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP LIFV F Y S+ R +F +Y P SLDEAYLD+TE ++
Sbjct: 63 MPSVTAARKCPGLIFVKPRFDAYREVSEKIRAIFSEYTPIIEPLSLDEAYLDVTENLKDM 122
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I+ EIA ++R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ TF+
Sbjct: 123 PIA-TEIALQIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPRHGP--TFV 179
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
L ++K G+G T +R + GI T ++ K + FF + G+
Sbjct: 180 EELAVKKFHGVGPATAEKMRRL-GIETGADLKAKSLTFLSQHFGKAGPFFYGIARGIDER 238
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYR---KLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKSI +E TF+ D + L +L +A+ + + + +GL G+TLTLK+K
Sbjct: 239 PVRPDRERKSIGAEDTFAA--DISALQAASDELRPLAQKVWSSCRAKGLSGKTLTLKVKY 296
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
A F TR+ T + ED+L+ A VLL P +RL+GL ++ DK
Sbjct: 297 ADFTQVTRSRTTSVPFAGVEDMLELAHVLLVGLHPFKRPVRLLGLTLSSLVIDK 350
>gi|313668564|ref|YP_004048848.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
gi|313006026|emb|CBN87485.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
Length = 352
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 155/286 (54%), Gaps = 19/286 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 --QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R R IS+E ++ ED L L +AE L + ++ + +++TLKLKT
Sbjct: 235 VEAERERLQISTE--ITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYD 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 282
F + TR +T + +L+ A +L P + RLIG+ V
Sbjct: 293 FRIITRTLTYSSVLPDCASLLQAAQMLTNRVPPQTEDAFRLIGIGV 338
>gi|153939133|ref|YP_001392095.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|384463083|ref|YP_005675678.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
gi|152935029|gb|ABS40527.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|295320100|gb|ADG00478.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
Length = 349
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 156/294 (53%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + +
Sbjct: 116 ---PIKVAEHIKKKVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQD--MIPSIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
LPI KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T +K + + L + + +SA++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSANLYKRNSGGKTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+F+ TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 289 NFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|440733826|ref|ZP_20913497.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
gi|440358515|gb|ELP95866.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
Length = 353
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 159/296 (53%), Gaps = 19/296 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE E
Sbjct: 56 MPALRAERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYLDVTEPKGEL 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
+ EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+ P+ V F
Sbjct: 116 A-TATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQ---VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
++ LP+ K+ G+GKV + L ++ GI T ++ G + S G+
Sbjct: 172 LTPLPVSKVPGVGKVMQAKLAEL-GIVTVGDLRTHGEVELEARFGSFGLRLYQRARGIDQ 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ +SISSE TF+ ED AL R LAE + +A + E + RT+ LK
Sbjct: 231 RPVEADQQVQSISSEDTFA--EDLALDALEPAIRLLAE--KTWTATRRTERI-ARTVVLK 285
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S + + A L + +LP S RL+G+ + F+E
Sbjct: 286 LKTAQFRILTRSFTPEQPPDSLQALTDIALALRQRVDLPASTRYRLVGVGLAGFHE 341
>gi|352516889|ref|YP_004886206.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
gi|348600996|dbj|BAK94042.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
Length = 378
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP FVP + KY S R++F Y S+DEAYLD+T + S I
Sbjct: 80 AYELCPHATFVPGNHQKYREISQKIREIFHCYTDIIEPVSIDEAYLDVTN-NKINSSSAI 138
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP G V+ D + F+ LPI
Sbjct: 139 KIAKLIQHDIWQEVHLTCSAGVSYNKFLAKLASDYQKPRGLTVVTPDE--AVEFLRDLPI 196
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 184
K G+GK T + ++ GI T ++ QK + L +F + V G+ ++
Sbjct: 197 EKFHGVGKKTVPKMHEL-GIYTGNDLYQKSEMELIQIFGKMGYSLYRKV-RGIHNSPVQV 254
Query: 185 ARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R RKS+ ERT+ ++T ++ L +L +AE ++ ++KE G+T+ LKL+ + FE
Sbjct: 255 TRERKSVGRERTYGKALTSEQECL-SQLRIMAEQVTESLKKEQKHGKTVVLKLRYSDFET 313
Query: 243 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 286
T+ T+Q+YI +DI AS++ + A++ +RL+G+ +T +
Sbjct: 314 ITKRATVQEYIYQKDDIFSQASLIFEEVAQVEKGVRLLGITMTNLD 359
>gi|71756033|ref|XP_828931.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834317|gb|EAN79819.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 570
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 160/301 (53%), Gaps = 24/301 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P D Y S++ R++ +YDPN++ LD+ L+++ + R
Sbjct: 183 MPGFLALKICPNLLLLPPDDDSYYLESNIVRRIVAEYDPNYIVVGLDDFTLEVSAYIERF 242
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 243 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTRGDVM 302
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ + GI T ++ + LC + ++ F L +G+
Sbjct: 303 TYVRDLGLRSVPGVGKVTEALLKGL-GITTLGDIHDRRVELCYILHNNLFRFLLGASIGI 361
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+F V K L+ + I E +M++
Sbjct: 362 MQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEMIYSIFEEAYEEMRQNE 421
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR-----LIGL 280
+ R ++L ++ +S+ + +L +Y S + + LL LP + + L+G+
Sbjct: 422 MLCRQISLLVRWSSYRYQQYTKSLIQYSDDSATLRRAVDGLL---LPHAAKYSEMCLLGV 478
Query: 281 R 281
R
Sbjct: 479 R 479
>gi|269214646|ref|ZP_05986970.2| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
gi|269209306|gb|EEZ75761.1| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
Length = 368
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 156/289 (53%), Gaps = 19/289 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 79 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 137
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 138 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 195
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 196 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 250
Query: 184 --QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R R IS+E ++ ED L L +AE L + ++ + +++TLKLKT
Sbjct: 251 VEAERERLQISTE--ITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYD 308
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
F + TR +T + +L+ A +L P + RLIG+ V +
Sbjct: 309 FRIITRTLTYSSVLPDCASLLQAAQMLTNRVPPQTEDAFRLIGIGVGRL 357
>gi|213155590|ref|YP_002317635.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|301346037|ref|ZP_07226778.1| DNA polymerase IV [Acinetobacter baumannii AB056]
gi|301596200|ref|ZP_07241208.1| DNA polymerase IV [Acinetobacter baumannii AB059]
gi|417575406|ref|ZP_12226259.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|421788645|ref|ZP_16224929.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|421799153|ref|ZP_16235155.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
gi|213054750|gb|ACJ39652.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|400206139|gb|EJO37119.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|410401585|gb|EKP53724.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|410410628|gb|EKP62527.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
Length = 351
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 157/287 (54%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP+
Sbjct: 120 EVAMYIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 233
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 234 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 294 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|261334853|emb|CBH17847.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 571
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 160/305 (52%), Gaps = 24/305 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P DF Y S++ R++ +YDPN+++ LD+ L+++ + R
Sbjct: 184 MPGFLALKICPNLLILPPDFDAYNEESNIVRRIVAEYDPNYISFGLDDFTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTRQDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ GI T ++ + LC + ++ F L +G+
Sbjct: 304 TYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYDRRVELCYILHNNLFRFLLGASIGI 362
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+ + K + + + +M+K
Sbjct: 363 MQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSE 422
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR-----LIGL 280
+ R ++L ++ AS+ + +L +Y S + + L+ LP + + L+G+
Sbjct: 423 IMCRRISLTIRWASYRYQQYTKSLIQYSDDSATLRRAVDELM---LPHAAKYSEMCLLGV 479
Query: 281 RVTQF 285
R++
Sbjct: 480 RLSDL 484
>gi|218768451|ref|YP_002342963.1| DNA polymerase IV [Neisseria meningitidis Z2491]
gi|433480065|ref|ZP_20437352.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|433520223|ref|ZP_20476941.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|433541303|ref|ZP_20497752.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
gi|22095638|sp|Q9JRG1.1|DPO4_NEIMA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|6900413|emb|CAB72023.1| putative DNA-damage inducible protein P [Neisseria meningitidis]
gi|121052459|emb|CAM08795.1| impB/mucB/samB family protein [Neisseria meningitidis Z2491]
gi|432215025|gb|ELK70916.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|432253761|gb|ELL09100.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|432276950|gb|ELL32002.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
Length = 352
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|298368851|ref|ZP_06980169.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
gi|298282854|gb|EFI24341.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
Length = 352
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 151/285 (52%), Gaps = 11/285 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S +F +Y SLDEAYLD+T+ ++ +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRSISAQIHGIFRRYTTLIEPLSLDEAYLDVTDNLQQIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++AE++R + E GLT SAG+APN+ LAK+ SD KPNGQFVLP + A F+ +LP+
Sbjct: 122 DVAEKIRAEILAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKAA--AFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +F + + G+
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELLN-LFGRYGYRLY-DLARGVDERPVK 236
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R IS+E T A L +AE L +Q++ + +++TLKLKT F +
Sbjct: 237 PDRERLQISTEITLPEDLSLAQAAGHLPHLAEDLWRQIQRKNVEAKSVTLKLKTHDFRII 296
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
TR++T + S +L+ A L P + RLIGL V
Sbjct: 297 TRSLTYSSVLPDSAALLRAAQTLAGRIPPQREDAFRLIGLGVAHL 341
>gi|385852932|ref|YP_005899446.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|416196178|ref|ZP_11618024.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|433465393|ref|ZP_20422874.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|433490777|ref|ZP_20447897.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|433505380|ref|ZP_20462318.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|433507449|ref|ZP_20464355.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
gi|325140607|gb|EGC63127.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|325199936|gb|ADY95391.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|432202592|gb|ELK58651.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|432226697|gb|ELK82421.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|432240672|gb|ELK96206.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|432240723|gb|ELK96256.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
Length = 352
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 153/284 (53%), Gaps = 15/284 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 282
+ TR +T + +L+ A +L+ P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLMARVSPQTEDAFRLIGIGV 338
>gi|333897923|ref|YP_004471797.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113188|gb|AEF18125.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
Length = 379
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 164/297 (55%), Gaps = 11/297 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++A+ LCP IF+P F +Y S+ + + S+DEAYLD+T++ +
Sbjct: 57 MPMYMAKTLCPHGIFLPVRFQRYREVSEKVFDILYEVTDIVEPLSIDEAYLDVTDIDKNP 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+IA+E++ V+ GLT SAGV+ N+ LAK+ SD NKP+G ++ D V +
Sbjct: 117 E----DIAKEIKEKVHMVTGLTVSAGVSYNKFLAKIASDWNKPDGLMIITED--MVPDIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
L + K+ GIGK + L+ + G+ +++L+ L +F + + + G+ S
Sbjct: 171 RPLSVSKVYGIGKKSSERLKKI-GVEKVDDLLKLSQDELTNIFGKYGKEIYDRIR-GIDS 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI E T T D LL + L A+++S++++ E L RT+T+K+KT+
Sbjct: 229 RPVETYRETKSIGKETTLKKDTSDADLLLKYLRGFADIVSSELKGERLYCRTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAPS 294
+F + TR+ TL +YI SS+DI A + K A++ +RLIGL V+ + K++ S
Sbjct: 289 NFTLHTRSRTLNEYIDSSDDIYSVAEAIFKEAKMTQPVRLIGLSVSNLSATKIKQLS 345
>gi|430744026|ref|YP_007203155.1| nucleotidyltransferase/DNA polymerase [Singulisphaera acidiphila
DSM 18658]
gi|430015746|gb|AGA27460.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Singulisphaera acidiphila DSM 18658]
Length = 361
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 152/293 (51%), Gaps = 17/293 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA++ CPELIFV F Y S R +F +Y P SLDEAYLD+TE +
Sbjct: 62 MPSVIAKRKCPELIFVKPRFDVYRAVSQQIRTIFAEYTPLIEPLSLDEAYLDVTE--NRK 119
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S E+AEE+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+ + + F
Sbjct: 120 GIFSATEVAEEIRAKIRAETGLTASAGVSYNKFLAKMASDERKPDGLFVITPKKGS--AF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP+ K GIG VT + + GI+ ++ + ++ S+ G+
Sbjct: 178 VENLPVGKFHGIGPVTRSKM-EALGIHNGGDLRSQTLSFLQKHFRKAGPYYFSLARGIDE 236
Query: 180 TNTPQARFRKSISSERT-----FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
R RKSI +E T F+V E +A L + ++ +RGRT+TLK
Sbjct: 237 RPVCADRVRKSIGAETTFNTDLFTVEEARAALEPLIGKVWSYCEGTT----IRGRTVTLK 292
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 285
K A F+ TR T+ ++S + + S LL+ PVS +RL+G+ ++
Sbjct: 293 AKYADFQQITRNRTVDVPVTSRAVLEEVVSALLERLFPVSKGIRLLGVALSSL 345
>gi|423016898|ref|ZP_17007619.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
gi|338780129|gb|EGP44547.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
Length = 360
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 6/249 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A++LCP+ ++VP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 60 MSAVRAQRLCPQAVYVPPDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYLDVT--VNKL 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S E+A+ +R + E GLT SAGVAPN+ LAK+ SD NKP+GQFV+ R V+ F
Sbjct: 118 GLPSATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQFVIRPTR--VLEF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+RK+ G+GKVT+ L + GI T ++ G + + G+
Sbjct: 176 LQPLPVRKVPGVGKVTQARL-EQLGIQTVGDLATHGVQELEHYFGRYGRRLYELARGIDE 234
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
+ + +S+E TFS + + +AE + + K+G GRT+ LKLKT
Sbjct: 235 REVQTDQPLQQVSAETTFSEDVRLEAIGEAIDRMAEKVWSQALKKGALGRTVVLKLKTDR 294
Query: 240 FEVRTRAVT 248
F + TR+ T
Sbjct: 295 FRILTRSQT 303
>gi|261377452|ref|ZP_05982025.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
gi|269146178|gb|EEZ72596.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
Length = 352
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHTVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|453331644|dbj|GAC86558.1| DNA polymerase IV [Gluconobacter thailandicus NBRC 3255]
Length = 379
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 150/288 (52%), Gaps = 7/288 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+L+FVP F Y S ++F +Y P SLDEAYLD+T+
Sbjct: 58 MPSLTAKRLCPDLVFVPARFDVYRTVSAQIHEIFARYTPLIQPLSLDEAYLDLTDYLGAY 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S +AE +RT + +E GLT SAGV+ NR LAK+ SD KP+G FV+ RM F+
Sbjct: 118 G-SATLVAESIRTDIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPRMGP-DFV 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ L + + GIG T +R GI T ++ + + +A F+ + G+
Sbjct: 175 AGLAVDQFHGIGPATARKMR-ALGIETGADLRKLDLPTLTRYFGKSALFYHGISRGIDER 233
Query: 181 NTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ +E+T+ S +D+ L IA L Q++ + GRT+TLK+K A
Sbjct: 234 PVVVNRERKSLGTEQTYLSDLKDENAARTALGLIATKLWLQAQRKQITGRTVTLKVKYAD 293
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 285
F TRA TL ++S + L P++ +RL+GL ++
Sbjct: 294 FRQITRARTLPASVNSEAVLADVGQSLFTPLFPLTPGVRLLGLTMSSL 341
>gi|402823561|ref|ZP_10872979.1| DNA polymerase IV [Sphingomonas sp. LH128]
gi|402262917|gb|EJU12862.1| DNA polymerase IV [Sphingomonas sp. LH128]
Length = 375
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 152/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+L+F F Y S R +F Y P+ SLDEAYLD+T +
Sbjct: 74 MPSARAVRLCPDLVFRKPRFEVYREVSQQIRAIFLDYTPHVEPLSLDEAYLDVTADLKGI 133
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IA+E+R + + LT SAGV+ N+ LAK+ SD NKP+G V+ A F+
Sbjct: 134 G-SATRIAQEIRRRIKADTRLTASAGVSYNKFLAKLASDQNKPDGLCVIRPGEGA--QFV 190
Query: 121 SSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ LP+R+ G+G + E + R GI T ++ K + L A F S A++ G+
Sbjct: 191 AGLPVRRFHGVGPRGAEKMAR--LGIETGADLAGKDLAFLRANFG-SFAEYLFRAARGVD 247
Query: 179 STNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ ERT F ED L + I + + +++ G RGRT+T+KL+
Sbjct: 248 LRQVRADRPRKSVGGERTFFENIEDPVALRETMDHIVDTVWERIERSGARGRTVTMKLRY 307
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
A F+ TRA +L +++ + LL+ LP+ +RL+GL ++ +
Sbjct: 308 ADFQTLTRARSLHHFVADKAEFSAIGHALLEDHLPLPQPIRLMGLTLSALEQ 359
>gi|421766181|ref|ZP_16202958.1| DNA polymerase IV [Lactococcus garvieae DCC43]
gi|407625350|gb|EKF52056.1| DNA polymerase IV [Lactococcus garvieae DCC43]
Length = 365
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 163/297 (54%), Gaps = 22/297 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KY S R++F +Y AAS+DEAYLD+TE + S I
Sbjct: 75 AYDLCPQAIFISGNYEKYRAVSKQVREIFNRYTEEVEAASIDEAYLDVTE-NKIGSTSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ +Y E GLTCSAGV+ N+ LAK+ SD KP+G ++P+D F++ LP
Sbjct: 134 KIAKLIQHDIYVELGLTCSAGVSYNKFLAKIASDYEKPHGLTVIMPDD---AKEFLAELP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L D+ GI ++ + L L F + FL G+ +
Sbjct: 191 VEKFHGVGKATGAKLHDM-GIFKGTDIQKVDPLDLADRFGIYGWNLFLKAN-GIHDSAVV 248
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+R RKS+ ERT+ LLY ++LA ++E +S ++ + L G T+ LKL+
Sbjct: 249 TSRQRKSVGKERTYG-----KLLYQIEDIKQELANLSERVSRNLNQHQLTGDTVVLKLRY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDKVR 291
+ F T+ L + IS ++DI A LL+ + + +RL+G+ +T F +++R
Sbjct: 304 SDFRTLTKRKKLAEKISKADDIAHTAHDLLEEIDYDDTLGVRLLGVTLTGFGVEELR 360
>gi|326389369|ref|ZP_08210937.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392939169|ref|ZP_10304813.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
gi|325994732|gb|EGD53156.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392290919|gb|EIV99362.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
Length = 389
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 158/298 (53%), Gaps = 23/298 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++ARKLCP IF+ +Y S + P S+DEAYLD+T + +
Sbjct: 57 MPMYMARKLCPHGIFLSVRRKRYEEVSAQIFNILYSITPLVEPVSIDEAYLDVTYIDKNP 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I IA E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + +
Sbjct: 117 EI----IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITED--MIPDIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL----- 175
LP+ K+ GIG+ +E L+ GINT +++L+ + S + F +GL
Sbjct: 171 KPLPVSKVYGIGEKSEQKLK-AMGINTIDDLLK-------LSQESLIEIFGKLGLEIYNR 222
Query: 176 --GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G+ R KSI E+T T+DK LL + ++++S ++ +E L RT+T
Sbjct: 223 IRGIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYVKLFSDIISEELVRERLYARTVT 282
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDK 289
+K+KT F V T++ TL KYI EDI A ++++ +L +RLIGL V+ + K
Sbjct: 283 VKIKTPDFAVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGLSVSNLSAVK 340
>gi|170759086|ref|YP_001788136.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
gi|169406075|gb|ACA54486.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
Length = 349
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 156/294 (53%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHERYKEVSNSIFKILYKITPIIEPVSIDEAYLDITNIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++AE ++ V +E GLT S G++ N+ LAK+ S+ NKP+G ++ D + + +
Sbjct: 116 ---SIKVAEHIKKRVKDEMGLTLSVGISYNKFLAKLASEWNKPDGIKIIRQD--MIPSIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
LPI KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T DK + + L + + +S ++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDITDKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+F+ TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 289 NFQTHTRSKTVDDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|427827542|ref|ZP_18994574.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
gi|316984579|gb|EFV63544.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
Length = 342
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 153/284 (53%), Gaps = 15/284 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 53 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 111
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 112 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 169
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 170 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 224
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 225 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 284
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 282
+ TR +T + +L+ A +L+ P + RLIG+ V
Sbjct: 285 IITRTLTYSSVLPDCAALLQAAQMLMARVSPQTEDAFRLIGIGV 328
>gi|374312136|ref|YP_005058566.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
gi|358754146|gb|AEU37536.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
Length = 382
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 19/302 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCPE IF+P DFT+Y S R++F ++ SLDEAYLD+T V +
Sbjct: 76 MPAITAERLCPEAIFLPPDFTRYKAVSRAVREIFQRHTDLIEPLSLDEAYLDVT-VNKNG 134
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
+ ++A +R + EE LT SAGVAPN+ LAK+ SD KPNG FV+ P D + TF
Sbjct: 135 LPTATKVASAIRQQIREELSLTASAGVAPNKFLAKIASDWRKPNGLFVIQPGD---LDTF 191
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLG 178
+ LP+ +I G+GKVTE L V GI T ++ + + L A F + G+
Sbjct: 192 LPPLPVGRIPGVGKVTETRLNQV-GIQTVGDLRNFELATLEAQFGRYGLRLH-ELARGID 249
Query: 179 STNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
R KSIS+E TF ++E + L+ R +AE + ++E RT+ LK
Sbjct: 250 HNPVVPDRPTKSISAEDTFQRDIPLSETEELIRR----LAEKVWTASRRESRMARTVVLK 305
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS--LRLIGLRVTQFNEDKVR 291
LKT+ F + TR+ T +S E++ A S+ + +L + RL+G+ ++ F E +
Sbjct: 306 LKTSEFNILTRSHTPLVPPASCEELTTIALSLRERIDLAATQRFRLVGVGLSNFREQESP 365
Query: 292 AP 293
P
Sbjct: 366 PP 367
>gi|384426413|ref|YP_005635770.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
gi|341935513|gb|AEL05652.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
Length = 359
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 165/299 (55%), Gaps = 15/299 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+TE +
Sbjct: 56 MPAVRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ LP+ +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 172 LLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELHAHFG-SFGQSLYRRARGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 230 ERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLK 287
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNEDKVRA 292
T++F + TR+ T ++ +S + ++ A L + ELP RL+G+ ++ F++ +++A
Sbjct: 288 TSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSGFSDPELQA 346
>gi|59801155|ref|YP_207867.1| DNA polymerase IV [Neisseria gonorrhoeae FA 1090]
gi|240014082|ref|ZP_04720995.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
DGI18]
gi|240016516|ref|ZP_04723056.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
FA6140]
gi|240121643|ref|ZP_04734605.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
PID24-1]
gi|268599074|ref|ZP_06133241.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268684378|ref|ZP_06151240.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268686699|ref|ZP_06153561.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|293399022|ref|ZP_06643187.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
gi|75432500|sp|Q5F8N2.1|DPO4_NEIG1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|59718050|gb|AAW89455.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae FA
1090]
gi|268583205|gb|EEZ47881.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268624662|gb|EEZ57062.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268626983|gb|EEZ59383.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610436|gb|EFF39546.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
Length = 352
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 153/284 (53%), Gaps = 17/284 (5%)
Query: 7 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 66
++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G E
Sbjct: 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG-E 122
Query: 67 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 126
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 180
Query: 127 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 181 KIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHPV 235
Query: 185 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F +
Sbjct: 236 KAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 295
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 296 ITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|21230058|ref|NP_635975.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769949|ref|YP_244711.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|188993162|ref|YP_001905172.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. B100]
gi|24211642|sp|Q8PCW8.1|DPO4_XANCP RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81304097|sp|Q4UQI2.1|DPO4_XANC8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21111581|gb|AAM39899.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575281|gb|AAY50691.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|167734922|emb|CAP53134.1| DNA polymerase IV [Xanthomonas campestris pv. campestris]
Length = 359
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 165/299 (55%), Gaps = 15/299 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+TE +
Sbjct: 56 MPAVRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ LP+ +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 172 LLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 230 ERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLK 287
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNEDKVRA 292
T++F + TR+ T ++ +S + ++ A L + ELP RL+G+ ++ F++ +++A
Sbjct: 288 TSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSGFSDPELQA 346
>gi|347530139|ref|YP_004836887.1| DNA polymerase IV [Sphingobium sp. SYK-6]
gi|345138821|dbj|BAK68430.1| DNA polymerase IV [Sphingobium sp. SYK-6]
Length = 366
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 158/287 (55%), Gaps = 15/287 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+LCPEL+FV F Y S R +F ++ SLDEAYLD+T+ +
Sbjct: 63 MPGGQARRLCPELVFVRARFDAYRAVSQQIRGIFERFTDVIQPLSLDEAYLDVTQ--NKL 120
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMT 118
GI S +A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V P + A
Sbjct: 121 GIVSATYVAQEIRRLIREETGLTASAGVSCNKLIAKLASDQNKPDGLCIVKPEEAEA--- 177
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLG 176
F++++P+ +I GIG VT + GI++ ++ K L A+ H +A F+ G
Sbjct: 178 FMAAMPVGRIHGIGPVTARRM-ATLGIHSGADL--KAWPLPALQRHFGKSATFYHDAARG 234
Query: 177 LGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ RKSIS E TF S + L +L +IA L + GRT+TLK+
Sbjct: 235 IDDRPVRDRETRKSISVEDTFESDIGAEGQLLAELEKIAARLWTRVIAARALGRTVTLKI 294
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGL 280
K F + TR+ TL ++ED+ + LL+A+LP+ + RL+GL
Sbjct: 295 KLGDFRILTRSRTLPAPPVNAEDLYAIGTDLLRAQLPLPIGARLLGL 341
>gi|421538412|ref|ZP_15984588.1| DNA polymerase IV [Neisseria meningitidis 93003]
gi|402316439|gb|EJU51984.1| DNA polymerase IV [Neisseria meningitidis 93003]
Length = 352
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ +G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>gi|325103858|ref|YP_004273512.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
gi|324972706|gb|ADY51690.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
Length = 366
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 162/294 (55%), Gaps = 12/294 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP LIF F Y S R +F +Y SLDEAYLD+T+ + G S I
Sbjct: 70 AIKLCPHLIFTRPRFDVYKEVSSHIRSIFYRYTDIIEPLSLDEAYLDVTDDKQNIG-SAI 128
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA++++ + +E LT SAG++ ++ +AK+ SD KP+G F+ P+ ++ FI +LP
Sbjct: 129 DIAKKIKQEIKDELDLTASAGISTSKFIAKIASDFQKPDGLTFIGPS---KIVPFIEALP 185
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
I K G+GKVT ++ + N + K + L F S FF + G+ + +
Sbjct: 186 IEKFFGVGKVTAAKMKKLGIFNGADLKKWKQNDLTKQFGKS-GKFFYEIVRGIDNRSVKP 244
Query: 185 ARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R KS+ +E TF + +D +L +L +++E +S + + +G+T+TLK+K + F
Sbjct: 245 NRISKSVGAEDTFENDIDDIEILNEELQKLSERVSRRLNDKEFKGKTMTLKVKFSDFTQI 304
Query: 244 TRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNEDKVRAPSD 295
TR+ TL Y +S + I +HAS LL+ +RL+G+ V+ F +K P+D
Sbjct: 305 TRSTTLDFYTNSFDIIFEHASSLLEHVDREEKRIRLLGVSVSHFFHEK---PAD 355
>gi|218459031|ref|ZP_03499122.1| DNA polymerase IV [Rhizobium etli Kim 5]
Length = 300
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 160/308 (51%), Gaps = 16/308 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+T+ +
Sbjct: 2 MPSVTAKRKCPDLIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTDNLKGM 61
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 62 EIA-TEIATEIRARIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 117
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGL 177
+ +LP++K G+G T + + GI+T ++ KG L + H + +F + G+
Sbjct: 118 VEALPVKKFHGVGPATAEKMHRL-GIDTGADL--KGKTLEFLVEHFGKSGPYFHGIARGI 174
Query: 178 GSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ +E TFS R+ L + E + + G+ +T+TLK+K
Sbjct: 175 DERQVKPDRVRKSVGAEDTFSKDLHAYEPAREGLQPLIEKVWGYCEANGIGAKTVTLKIK 234
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPS 294
A F TR+ T+ + + D+ + S+LL P +RL+G+ ++ RAP
Sbjct: 235 YADFNQITRSKTVPGLLPAITDLEEIISLLLAPIFPPPKGIRLLGITLSSLER---RAPG 291
Query: 295 DPTQKTLT 302
Q L
Sbjct: 292 TEPQLRLA 299
>gi|414342328|ref|YP_006983849.1| DNA polymerase IV [Gluconobacter oxydans H24]
gi|411027663|gb|AFW00918.1| DNA polymerase IV [Gluconobacter oxydans H24]
Length = 379
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 156/306 (50%), Gaps = 11/306 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+L+FVP F Y S ++F +Y P SLDEAYLD+T+
Sbjct: 58 MPSLKAKRLCPDLVFVPARFDVYRTVSAQIHEIFARYTPLIQPLSLDEAYLDLTDYLGAY 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S +AE +R + +E GLT SAGV+ NR LAK+ SD KP+G FV+ RM F+
Sbjct: 118 G-SATLVAESIRADIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPRMGP-DFV 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
+ L + + GIG T +R GI T + L+K L L F S A F+ + G+
Sbjct: 175 AGLAVDQFHGIGPATARKMR-ALGIETGAD-LRKLDLPTLTRHFGKS-ALFYHGISRGID 231
Query: 179 STNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E+T+ S +D+ L IA L Q++ + GRT+TLK+K
Sbjct: 232 ERPVVVNRERKSLGTEQTYLSDLKDENAARAALGLIATKLWLQAQRKQITGRTVTLKVKY 291
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKVRAPSD 295
A F TRA TL ++S + L P++ +RL+GL ++ P
Sbjct: 292 ADFRQITRARTLPASVNSEAVLADVGQSLFTPLFPLTPGVRLLGLTMSSLAGTDDATPDS 351
Query: 296 PTQKTL 301
P Q L
Sbjct: 352 PPQMQL 357
>gi|343472335|emb|CCD15475.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 610
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 162/325 (49%), Gaps = 20/325 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+PGFI KLC +L+ VP D Y S + ++ +YDP+ ++ +DE L++++ +
Sbjct: 207 IPGFIGMKLCRDLVIVPLDLEAYRAESAIVHRIASEYDPDCVSVGMDELTLEVSDYLSRQ 266
Query: 61 G--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G ++ +++A ELR V+ E LT SAG+ P LAK+ S+ NKPNGQ+ L + R VM
Sbjct: 267 GGTMTAVDVATELRARVFRETQLTSSAGIGPTAALAKIASNYNKPNGQYELRLHTREDVM 326
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
++ LP+R GIGK E+ L+ INT ++ ++ LC V + F L +G+
Sbjct: 327 RYVRDLPLRAAPGIGKAMENTLKG-LDINTLGDIYERRVELCYVLTEKLYRFLLGNAIGV 385
Query: 178 GSTN----TPQARF--------RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
S P F RKS+ SER FS KA L I + + +++
Sbjct: 386 MSWPCSCVAPAYEFCDRTLITARKSVGSERAFSALCSKAELKEVATTIFQAVYDELRANE 445
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVT 283
R ++L+++ SF ++ +L ++ + + LL + S+RL+G+R+
Sbjct: 446 WVCRQVSLRIRWPSFRIQQFTKSLPQHSDDHSTLNRALGELLLPHVSYYASMRLLGIRLL 505
Query: 284 QFNEDK--VRAPSDPTQKTLTNFMT 306
K + QKTL+ F T
Sbjct: 506 DLVSKKEYLAKQRGGVQKTLSQFCT 530
>gi|406888144|gb|EKD34717.1| DNA-directed DNA polymerase [uncultured bacterium]
Length = 335
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 168/318 (52%), Gaps = 12/318 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP IF ++Y S ++F +Y P SLDEA+LD+T + +
Sbjct: 27 MPSAQAARLCPHAIFTQPRMSRYKEISLKIMEIFRQYTPLVEPLSLDEAFLDVT-INNDN 85
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +A+++R ++ E LT SAG++ N+ LAKV SDINKPNG +P + + F+
Sbjct: 86 NPSATILADKIRRQIFRELQLTASAGISFNKFLAKVASDINKPNGIATIPPGK--ALEFL 143
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SSLPIRK G+GK TE + + GI T ++ Q + FF + G+ +
Sbjct: 144 SSLPIRKFYGVGKATEQKMHQL-GITTGYDLRQWQEDNLILHFGKIGSFFHDIVRGIDNR 202
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI E T ++ T+D + L +AE L ++++ + G TLTLK++
Sbjct: 203 PVEPQRIRKSIGCETTLAIDTDDICKINDILTGLAEELGNSLKRKRIGGYTLTLKVRYLD 262
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKVRAPSDPT 297
F TR++T++ + S++DIL LL A S +RL+GL V + + + S P
Sbjct: 263 FITITRSLTVKIPLFSTDDILPLLPTLLHATAAGSRKIRLLGLSVAKLADGE---KSIPR 319
Query: 298 QKTLTNFMTSGHASKKIV 315
Q L FMT G S+ +V
Sbjct: 320 QLKLP-FMT-GINSRPVV 335
>gi|114321922|ref|YP_743605.1| DNA-directed DNA polymerase [Alkalilimnicola ehrlichii MLHE-1]
gi|122310678|sp|Q0A4X2.1|DPO4_ALHEH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|114228316|gb|ABI58115.1| DNA-directed DNA polymerase [Alkalilimnicola ehrlichii MLHE-1]
Length = 355
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 161/288 (55%), Gaps = 12/288 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP + A +LCP+ +F+ F Y S + +F +Y P SLDEAYLD+++ C R
Sbjct: 59 MPAWRAARLCPDAVFLRPRFDVYRSISAQIQALFREYTPLVEPLSLDEAYLDVSD-CPRR 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IA E+R ++E+ GLT SAGV+ N+ LAK+ SD++KP+G V+P ++ F+
Sbjct: 118 GGSATLIAREIRARIHEQTGLTASAGVSCNKFLAKIASDLDKPDGLHVIPPEQ--AEAFV 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
++LP+ KI G+G+ T + + G+ T ++ + L S A F+ + G
Sbjct: 176 AALPVGKIHGVGQATRQRM-ERMGVRTGADLRRLTLLELQRAFGSRARFYYELARGRDER 234
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ +E TF + A + ++A +A+ ++A + + GL GRT+TLK+K
Sbjct: 235 PVRPRRERKSVGAETTFGEDLNNPAEMLERMAPLADKVAASLHRRGLAGRTVTLKVKYHD 294
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 283
F TR+++ + + S+++I LL+ + PV RL+G+ V+
Sbjct: 295 FRQITRSLS-GRPVQSADEIRARLPALLQDTEAGDRPV--RLLGVTVS 339
>gi|422320499|ref|ZP_16401558.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
gi|317404723|gb|EFV85111.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
Length = 360
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 156/293 (53%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A++LCP+ ++VP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 60 MSAVRAQRLCPQAVYVPPDFNRYREVSRQIRQIFGRHTDLIEPLSLDEAYLDVT--VNKL 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S E+A+ +R + E GLT SAGVAPN+ LAK+ SD NKP+GQ+V+ R V+ F
Sbjct: 118 GLPSATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQYVIRPSR--VLEF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+RK+ G+GKV + L + GI+T ++ + + + G+
Sbjct: 176 LQPLPVRKVPGVGKVMQARL-EQLGIHTVGDLATHAAQELEHYFGRYGRRLYELARGIDD 234
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
+ + +S+E TFS + L +A+ + + K+G GRT+ LKLKT
Sbjct: 235 REVQTDQPLQQVSAETTFSEDVRLEAVGEALDRMADKVWSQALKKGALGRTVVLKLKTDR 294
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNEDK 289
F + TR+ T +S+ ++ A +L + +LP RL G+ ++ F + +
Sbjct: 295 FRILTRSQTNPNPPASAAELATMARLLCERVDLPAQTLYRLAGVGMSNFADPQ 347
>gi|380513106|ref|ZP_09856513.1| DNA polymerase IV [Xanthomonas sacchari NCPPB 4393]
Length = 356
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 158/295 (53%), Gaps = 17/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T E
Sbjct: 59 MPALRAERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDMIEPLSLDEAYLDVTAPKGEL 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ EIA+ +R + E LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+
Sbjct: 119 R-TATEIAQTIRAQIRAETELTASAGIAPNKFLAKIASDWRKPDGQFVIRPHR--VEAFL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP+ K+ G+GKV E L ++ GI T ++ + S G+
Sbjct: 176 TPLPVNKVPGVGKVMEAKLAEL-GIATVGDLRARSEAELEARFGSFGLRLYQRARGIDER 234
Query: 181 NTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ +SISSE TF+ ED AL R+LAE + +A + E + RT+ LKL
Sbjct: 235 PVESDQPVQSISSEDTFA--EDLALDALEPAIRQLAE--KTWNATRRTERI-ARTVVLKL 289
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 287
KTA F + TR+ T ++ S + ++ A L + +LP S RL+G+ ++ F+E
Sbjct: 290 KTAQFRILTRSFTPEQPPESLQTLIDIALALRARVDLPASTRYRLVGVGLSGFHE 344
>gi|385323903|ref|YP_005878342.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|385328701|ref|YP_005883004.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|385850975|ref|YP_005897490.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|416169881|ref|ZP_11608241.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|416182644|ref|ZP_11612119.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|416187280|ref|ZP_11614150.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|416212875|ref|ZP_11622033.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|421551063|ref|ZP_15997063.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|421555045|ref|ZP_16000984.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|421556829|ref|ZP_16002739.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|421561526|ref|ZP_16007368.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|433471763|ref|ZP_20429146.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|433477892|ref|ZP_20435210.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|433488729|ref|ZP_20445887.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|433509644|ref|ZP_20466510.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|433511655|ref|ZP_20468478.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|433522170|ref|ZP_20478857.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|433526276|ref|ZP_20482906.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|433539224|ref|ZP_20495699.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
gi|261392290|emb|CAX49816.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|308389553|gb|ADO31873.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|325130510|gb|EGC53265.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|325134571|gb|EGC57215.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|325136508|gb|EGC59112.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|325144732|gb|EGC67027.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|325205798|gb|ADZ01251.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|389605414|emb|CCA44332.1| DNA polymerase IV [Neisseria meningitidis alpha522]
gi|402328597|gb|EJU63964.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|402332198|gb|EJU67529.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|402336083|gb|EJU71345.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|402337822|gb|EJU73068.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|432207720|gb|ELK63708.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|432214708|gb|ELK70604.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|432222595|gb|ELK78386.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|432246145|gb|ELL01602.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|432246416|gb|ELL01864.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|432258548|gb|ELL13830.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|432261040|gb|ELL16297.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|432272947|gb|ELL28049.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
Length = 352
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|385855494|ref|YP_005902007.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
gi|325204435|gb|ADY99888.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
Length = 352
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ +G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|148380777|ref|YP_001255318.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|153932271|ref|YP_001385062.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|153934711|ref|YP_001388531.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
gi|148290261|emb|CAL84381.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|152928315|gb|ABS33815.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|152930625|gb|ABS36124.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
Length = 349
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 155/294 (52%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + +
Sbjct: 116 ---PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQD--MIPSIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
LPI KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNTGGKTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+F+ TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 289 NFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|121635137|ref|YP_975382.1| DNA polymerase IV [Neisseria meningitidis FAM18]
gi|385340339|ref|YP_005894211.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|416178473|ref|ZP_11610615.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|416192460|ref|ZP_11616642.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|416203316|ref|ZP_11620044.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|421542743|ref|ZP_15988849.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|433467593|ref|ZP_20425047.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|433492845|ref|ZP_20449935.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|433494972|ref|ZP_20452039.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|433497141|ref|ZP_20454176.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|433499204|ref|ZP_20456211.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|433501175|ref|ZP_20458160.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|433503328|ref|ZP_20460288.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
gi|189027672|sp|A1KUQ3.1|DPO4_NEIMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|120866843|emb|CAM10601.1| impB/mucB/samB family protein [Neisseria meningitidis FAM18]
gi|325132193|gb|EGC54889.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|325138126|gb|EGC60699.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|325142626|gb|EGC65017.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|325198583|gb|ADY94039.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|402316662|gb|EJU52204.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|432202427|gb|ELK58491.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|432227708|gb|ELK83416.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|432229620|gb|ELK85305.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|432233226|gb|ELK88858.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|432233631|gb|ELK89257.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|432235148|gb|ELK90765.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|432239638|gb|ELK95186.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
Length = 352
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>gi|319788065|ref|YP_004147540.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317466577|gb|ADV28309.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 364
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 157/300 (52%), Gaps = 27/300 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ +FVP DF +Y S R++ ++ SLDEAYLD+T R
Sbjct: 64 MPALRAERLCPDAVFVPPDFVRYKAVSRQVREIMLEHTDLVEPLSLDEAYLDVT-TPRTG 122
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S +AE +R + E GLT SAGVAPN+ LAK+ SD NKP+G FV+ P V F
Sbjct: 123 LPSATAVAEAIRAKIRAETGLTASAGVAPNKFLAKIASDWNKPDGLFVIRPQH---VERF 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTC--------EEMLQK-GSLLCAVFSHSTADFF 170
++ LP+ +I G+GKV + L + GI T EE+ Q+ GS A++ +
Sbjct: 180 LTPLPVERIPGVGKVMQGKLAE-LGIATVGELRSRPLEELQQRFGSFGAALYRRAR---- 234
Query: 171 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 230
G+ + +S+SSE TF+ L + ++AE ++ G G T
Sbjct: 235 -----GIDERPVEPDQPVRSVSSEDTFAGDLPLEALEPAIRQLAEKTWNASRRAGRDGHT 289
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
+ LKLKTA F + TR++TL++ +S+ ++ A L + LP RL+G+ ++ F +
Sbjct: 290 VVLKLKTAQFRILTRSLTLERPPASAAELADLACALRERVSLPAETRYRLVGVGLSGFRD 349
>gi|384215689|ref|YP_005606855.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
gi|354954588|dbj|BAL07267.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
Length = 368
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 159/296 (53%), Gaps = 17/296 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R++F ++ P SLDEAYLD+TE
Sbjct: 71 MPSVTAKRQCPDLIFVKPRFEVYKAVSQQIREIFAEHTPTIEPLSLDEAYLDVTE----- 125
Query: 61 GISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +A + +R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ +
Sbjct: 126 NLQGIPLARDVALAIRAKIKEVTGLNASAGISYNKFLAKLASDHRKPNGQYVITPEMGP- 184
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +LP+ K GIG T + + G+ T +M + ++ S+ G
Sbjct: 185 -AFVENLPVGKFHGIGPATGAKM-NALGLYTGLDMRNQSLEFMQTNFGKAGTYYYSISRG 242
Query: 177 LGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + R RKS+ +E TFS + E +A++ ++ + + + +++G RGRT+TLK
Sbjct: 243 VDNREVRADRVRKSVGAENTFSTDLIEFEAMV-SEVQPLIDKVWRHCEEKGSRGRTVTLK 301
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRVTQFNED 288
+K A FE+ TR+ ++ +SS D+ + LL+ E LP +RL+G+ ++ + +
Sbjct: 302 VKFADFEIMTRSRSVPTAVSSRSDLERLVISLLENETPLPRPVRLLGISLSSLHPE 357
>gi|260551121|ref|ZP_05825325.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|424057302|ref|ZP_17794819.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
gi|260405888|gb|EEW99376.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|407440835|gb|EKF47352.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
Length = 351
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 156/288 (54%), Gaps = 15/288 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP ++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPHVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ + V +FI LP+
Sbjct: 120 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQ--VGSFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 233
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 234 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAELPVS----LRLIGLRVTQFN 286
+ + + I S +D+++ +LL E+ +S RLIG+ V Q
Sbjct: 294 LQHSKSFKNPIHSQQDLIQVLFLLLN-EMHISENFQFRLIGIGVYQLQ 340
>gi|384539827|ref|YP_005723910.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
gi|336035170|gb|AEH81101.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
Length = 378
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 153/291 (52%), Gaps = 11/291 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S + +F +Y P SLDEAYLD+TE +
Sbjct: 80 MPSVTAKRKCPDLIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGL 139
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEE+RT + + LT SAGV+ N+ LAK+ SD KP+G FV+ R F+
Sbjct: 140 RLA-TEIAEEIRTRIKAKTHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKRGP--EFV 196
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 197 QALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDER 255
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKT 237
R RKSI +E TF ED L A + ++ + G+RG+T+TLK+K
Sbjct: 256 EVKPDRIRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKW 313
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
A F TR+ T+ I+S ++ + A +LL PV +RL+G+ ++ +
Sbjct: 314 ADFTQITRSKTIVAPIASVAEMREIAELLLSPIFPVPKGIRLLGVTLSSLD 364
>gi|398808463|ref|ZP_10567326.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Variovorax sp. CF313]
gi|398087495|gb|EJL78081.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Variovorax sp. CF313]
Length = 405
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 151/284 (53%), Gaps = 11/284 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF +Y YS + + + P +DE Y+D T+V + G
Sbjct: 92 AAKLCPQAIILPVDFDEYRRYSRAFKNIILEVAPLMEDRGVDEVYIDFTDVPGGQRDGGR 151
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++T++++ GLTCS GVAPN+L+AK+ S+ NKPNG V+ + T I LP
Sbjct: 152 SLARLIQTAIFDATGLTCSIGVAPNKLIAKMASEFNKPNGISVVYEHDLE--TRIWPLPC 209
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
RK+ GIG + L+ FGI T ++ + L A F +T + V G +
Sbjct: 210 RKVNGIGPKADEKLKR-FGIETVGQLAARDRDWLVATFGKATGAWMHEVAWGRDNRPVVT 268
Query: 185 ARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
S+S E TF D+A L + E L+AD+Q++G G+T+ +KL+ F
Sbjct: 269 ESEPVSMSRETTFDRDLHAVRDRAELGAIFTHLCEQLAADLQRKGYVGKTIGIKLRYDDF 328
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 282
++ TR T++++ S ++ I +H L +P+ LRL+G+RV
Sbjct: 329 KIATRDQTIERFTSDAKTI-RHTGGLCLKRVPLERPLRLLGVRV 371
>gi|421544771|ref|ZP_15990844.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|421546859|ref|ZP_15992901.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|421549106|ref|ZP_15995128.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|421553074|ref|ZP_15999043.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|421559533|ref|ZP_16005406.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|433537101|ref|ZP_20493603.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
gi|402322503|gb|EJU57961.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|402322684|gb|EJU58135.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|402324927|gb|EJU60349.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|402329587|gb|EJU64947.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|402335332|gb|EJU70598.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|432272862|gb|ELL27967.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
Length = 352
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ +G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|304387164|ref|ZP_07369408.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
gi|304338768|gb|EFM04878.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
Length = 342
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 53 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 111
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 112 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 169
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 170 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 224
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 225 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 284
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 285 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 328
>gi|261334858|emb|CBH17852.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
Length = 572
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 24/305 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN++ LDE L+++ + R
Sbjct: 184 MPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYIVVGLDELALEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTREDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ GI T ++ + LC + ++ F L +G+
Sbjct: 304 TYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFRFLLGASIGI 362
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+ + K + + + +M+K
Sbjct: 363 MQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSE 422
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR-----LIGL 280
+ R ++L ++ AS+ + +L ++ S + + L+ LP + + L+G+
Sbjct: 423 IMCRRISLTIRWASYRYQQYTKSLIQHSDDSATLRRAVDELM---LPHAAKYSEMCLLGV 479
Query: 281 RVTQF 285
R++
Sbjct: 480 RLSDL 484
>gi|170755759|ref|YP_001782423.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|429244890|ref|ZP_19208309.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
gi|169120971|gb|ACA44807.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|428758080|gb|EKX80533.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
Length = 349
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 155/294 (52%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + +
Sbjct: 116 ---PIKVAEHIKKKVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQD--MIPSIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
LPI KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+F+ TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 289 NFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|209547183|ref|YP_002279101.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538427|gb|ACI58361.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 363
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 151/289 (52%), Gaps = 9/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S R++F +Y P SLDEAYLD+T +
Sbjct: 65 MPSVTAKRKCPELIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTHNLKGM 124
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + E GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 125 EIA-TEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 180
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T + + GI+T + +K + +F + G+
Sbjct: 181 VEALPVKKFHGVGPATAERMHRL-GIDTGASLKEKSLEFLVEHFGKSGPYFYGIARGIDE 239
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TFS R+ L + E + A + G+ +T+TLK+K A
Sbjct: 240 RQVKPNRVRKSVGAEDTFSQDLHTFEPAREGLQPLIEKVWAYCEANGIGAKTVTLKVKYA 299
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
F TR+ T+ + + D+ + S+LL P +RL+G+ ++
Sbjct: 300 DFNQITRSKTVPAPLPAIADLEEIISLLLVPIFPPRKGVRLLGVTLSSL 348
>gi|433656055|ref|YP_007299763.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433294244|gb|AGB20066.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 379
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 170/301 (56%), Gaps = 19/301 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF-CKYDPNFMAA--SLDEAYLDITEVC 57
MP ++A++LCP IF+P F +Y ++++KVF Y+ + S+DEAYLD+T++
Sbjct: 57 MPMYMAKRLCPNGIFLPVRFERY---REVSKKVFDILYEVTDIVEPLSIDEAYLDVTDID 113
Query: 58 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 117
+ +IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+G V+ D V
Sbjct: 114 KNPE----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMVITED--MVP 167
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSV-GL 175
+ L + K+ GIG+ + L+ + GI +++L+ L +F + + + G+
Sbjct: 168 DILRPLNVSKVYGIGEKSSERLKKI-GIEKVDDLLKLSEEELTNIFGKYGKEIYDRIRGI 226
Query: 176 GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
L T R KSI E T T+D +L + L + +S +++KE L RT+T+K
Sbjct: 227 DLRPVET--YRETKSIGKETTLKEDTDDIEILSKYLGGFSRTISLELKKEKLYCRTVTVK 284
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAP 293
+KT +F V T++ TL +YI S EDI AS +LK + + +RLIGL V+ + + ++
Sbjct: 285 IKTWNFTVHTKSRTLNEYIDSPEDIYNVASSILKESNISQPVRLIGLSVSNLSTNNIKQL 344
Query: 294 S 294
S
Sbjct: 345 S 345
>gi|345016684|ref|YP_004819037.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032027|gb|AEM77753.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
Length = 389
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 157/295 (53%), Gaps = 23/295 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++A+KLCP IF+ +Y S + P S+DEAYLD+T + +
Sbjct: 57 MPMYMAKKLCPHGIFLSVRRKRYEEVSKQIFDILYSITPLVEPVSIDEAYLDVTYIDKNP 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I IA E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + +
Sbjct: 117 EI----IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITEDMIP--DIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL----- 175
LP+ K+ GIG+ +E L+ GINT +++L+ + S + F +GL
Sbjct: 171 KPLPVSKVYGIGEKSEQKLK-AMGINTIDDLLK-------LSQESLIEIFGKLGLEIYNR 222
Query: 176 --GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G+ R KSI E+T T+DK LL + ++++S ++ +E L RT+T
Sbjct: 223 IRGIDERPVETMREIKSIGKEKTLEKDTKDKKLLLHYVKLFSDIISEELVRERLYARTVT 282
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 286
+K+KT F V T++ TL KYI EDI A ++++ +L +RLIGL V+ +
Sbjct: 283 VKIKTPDFAVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGLSVSNLS 337
>gi|254805229|ref|YP_003083450.1| DNA polymerase IV [Neisseria meningitidis alpha14]
gi|421568021|ref|ZP_16013752.1| DNA polymerase IV [Neisseria meningitidis NM3001]
gi|254668771|emb|CBA06675.1| DNA-damage-inducible protein p [Neisseria meningitidis alpha14]
gi|254672331|emb|CBA05492.1| DNA polymerase IV [Neisseria meningitidis alpha275]
gi|402342966|gb|EJU78122.1| DNA polymerase IV [Neisseria meningitidis NM3001]
Length = 352
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|294664551|ref|ZP_06729895.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292605685|gb|EFF48992.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 359
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 157/293 (53%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T+ +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQSIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFSD 341
>gi|87200669|ref|YP_497926.1| DNA polymerase IV [Novosphingobium aromaticivorans DSM 12444]
gi|87136350|gb|ABD27092.1| DNA-directed DNA polymerase [Novosphingobium aromaticivorans DSM
12444]
Length = 378
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 150/289 (51%), Gaps = 9/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A LCP+LIF F Y S R +F Y P+ SLDEAYLD+T+ R
Sbjct: 72 MPSARAIVLCPDLIFCRPRFDVYRSVSQQIRAIFLDYTPHVEPLSLDEAYLDVTDDVRGI 131
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE +R + + GLT SAGV+ N+ LAK+ SD NKP+G V+ A F+
Sbjct: 132 G-SATRIAELIRRRIKADTGLTASAGVSYNKFLAKIASDQNKPDGMCVIRPGEGA--QFV 188
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+SLP+R+ GIG + GI T ++ + S AD+ G+
Sbjct: 189 ASLPVRRFHGIGPRGAEKM-AALGIETGADLRARDLPFLRQHFGSLADYLYRAVRGIDLR 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +ERTF ++ A L L I E++ +++ G GRT+TLK+K
Sbjct: 248 QVKADRPRKSVGAERTFERDISSGPA-LRETLERILEIVWDRIERSGASGRTVTLKMKFN 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 285
F TRA +L + I+ E+ + + LL A+LP++ +RL+GL ++
Sbjct: 307 DFTPITRARSLPRPIADKEEFARLSRELLDAQLPLAKPIRLMGLTLSAL 355
>gi|421485956|ref|ZP_15933508.1| DNA polymerase IV [Achromobacter piechaudii HLE]
gi|400195737|gb|EJO28721.1| DNA polymerase IV [Achromobacter piechaudii HLE]
Length = 356
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 161/301 (53%), Gaps = 15/301 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A +LCP+ I+VP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MSAVRAERLCPQAIYVPPDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYLDVT--INKC 113
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S E+A+ +R + EE GLT SAG+APN+ LAK+ SD NKP+GQFV+ + V+ F
Sbjct: 114 GLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVVRPGK--VLDF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+RK+ G+GKVT+ L + GI+T ++ + + + G+
Sbjct: 172 LQPLPVRKVPGVGKVTQARL-EQLGIHTVGDLATHSAEELEHYFGRYGRRLYELARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ + +S+E TFS ED L L + +A+ + K+G GRT+ LKLKT
Sbjct: 231 REVQTDQPLQQVSAETTFS--EDIRLDALGDAIDRMADRVWDQALKKGALGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE--DKVRA 292
F + TR+ T S+ ++ A +L + ELP RL G+ ++ F + ++ R
Sbjct: 289 DRFRILTRSQTSPNPPGSAAELAAVAKLLCERVELPPETLYRLAGVGMSNFADPAEQARQ 348
Query: 293 P 293
P
Sbjct: 349 P 349
>gi|161870317|ref|YP_001599487.1| DNA polymerase IV [Neisseria meningitidis 053442]
gi|161595870|gb|ABX73530.1| putative DNA-damage inducible protein P [Neisseria meningitidis
053442]
Length = 342
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 53 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 111
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 112 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 169
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 170 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 224
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 225 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 284
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 285 IITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 328
>gi|445429972|ref|ZP_21438363.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
gi|444761010|gb|ELW85437.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
Length = 351
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 155/287 (54%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A FI LP+
Sbjct: 120 EVAMHIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--NFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 233
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 234 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 294 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|168184461|ref|ZP_02619125.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|237796253|ref|YP_002863805.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
gi|182672433|gb|EDT84394.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|229262753|gb|ACQ53786.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
Length = 349
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 155/294 (52%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + +
Sbjct: 116 ---PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQD--MIPSIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
LPI KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+F+ TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 289 NFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|385335758|ref|YP_005889705.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164301|gb|ADV07842.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
Length = 368
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 154/288 (53%), Gaps = 17/288 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y S DEAYLD+T + +G
Sbjct: 79 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYLDVTRNFKNIPYAG- 137
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 138 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 195
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 196 GKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHP 250
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 251 VKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 310
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQF 285
+ TR +T + +L+ A +L+ A +P + RLIG+ V +
Sbjct: 311 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGVGRL 357
>gi|296314223|ref|ZP_06864164.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
gi|296839124|gb|EFH23062.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
Length = 352
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCVALLQ-AVQMLMARVPPQTEDAFRLIGIGV 338
>gi|226950227|ref|YP_002805318.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
gi|226843691|gb|ACO86357.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
Length = 349
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 155/294 (52%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + +
Sbjct: 116 ---PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQD--MIPSIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
LPI KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+F+ TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 289 NFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|254283888|ref|ZP_04958856.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
gi|219680091|gb|EED36440.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
Length = 371
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 159/309 (51%), Gaps = 12/309 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ C EL+FV F Y S + +F +Y SLDEAYLD++E RER
Sbjct: 64 MPSITAKRKCSELLFVKPRFDVYRTVSQQIQAIFRRYTALVEPLSLDEAYLDVSE-DRER 122
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S E AE +R ++EE GLT SAGV+ N+ LAKV SD NKPNG V+ P++ A F
Sbjct: 123 VGSATETAERIRREIFEEVGLTASAGVSYNKFLAKVASDQNKPNGLCVIRPHEGAA---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ LP R+ G+G T + GI++ ++ Q L F S A + G
Sbjct: 180 AAGLPARRFFGVGPKTAQRM-AALGIHSGADLRAQSLDFLQQHFGKS-ALYLYRASRGED 237
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKSI ERT+S + L L +I +++ ++ RGRT+TLK+K
Sbjct: 238 FREVRPNRERKSIGGERTYSTDLKHSQELRAALVDIIDLVWRRIEARTARGRTVTLKIKF 297
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF-NEDKVRAPS 294
+ F TRA ++ I S E + A LL+ LPV +RLIGL ++ + D + +
Sbjct: 298 SDFRQITRARSVHSCIDSLEGFSQIAHALLETVLPVERGVRLIGLTLSSLESSDAPTSSA 357
Query: 295 DPTQKTLTN 303
+P K LT
Sbjct: 358 EPATKALTQ 366
>gi|387819084|ref|YP_005679431.1| DNA polymerase IV [Clostridium botulinum H04402 065]
gi|322807128|emb|CBZ04702.1| DNA polymerase IV [Clostridium botulinum H04402 065]
Length = 349
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 155/294 (52%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKITPIIEPVSIDEAYLDITNIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + +
Sbjct: 116 ---PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQD--MIPSIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
LPI KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+F+ TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 289 NFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|365885711|ref|ZP_09424698.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
gi|365285650|emb|CCD97229.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
Length = 368
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 157/295 (53%), Gaps = 17/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV F Y S R +F ++ P SLDEAYLD+T+
Sbjct: 70 MPSVTAKRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPVIEPLSLDEAYLDVTD----- 124
Query: 61 GISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +IA ++R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + A
Sbjct: 125 NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGA- 183
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ LP+ K GIG T + GI+T ++ + ++ + G
Sbjct: 184 -AFVEGLPVGKFHGIGPATAAKF-NALGIHTGLDIRNQSLPFLQQHFGKAGSYYYWISRG 241
Query: 177 LGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ R RKSI +E TF+ +TE + + +L + + + + G RGRT+TLK
Sbjct: 242 IDHRPVRANRIRKSIGAENTFAADLTEFEPMAA-ELQPLIDKVWRHCEATGNRGRTVTLK 300
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
+K A FE+ TR+ ++ +++ ++ + + LL+AELP+ +RL+G+ ++ E
Sbjct: 301 VKFADFEIITRSRSVVTVVATRAELERLSLALLQAELPLPKPVRLLGVSLSSLQE 355
>gi|254493799|ref|ZP_05106970.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268594856|ref|ZP_06129023.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268596764|ref|ZP_06130931.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268601428|ref|ZP_06135595.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268603758|ref|ZP_06137925.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268682227|ref|ZP_06149089.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291043738|ref|ZP_06569454.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
gi|226512839|gb|EEH62184.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268548245|gb|EEZ43663.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268550552|gb|EEZ45571.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268585559|gb|EEZ50235.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268587889|gb|EEZ52565.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268622511|gb|EEZ54911.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291012201|gb|EFE04190.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
Length = 352
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y S DEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYLDVTRNFKNIPYAG- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|71756027|ref|XP_828928.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834314|gb|EAN79816.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 159/305 (52%), Gaps = 24/305 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++ LD+ L+++ + R
Sbjct: 184 MPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGLDDFTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTREDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ GI T ++ + LC + ++ F L +G+
Sbjct: 304 TYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFRFLLGASIGI 362
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+ + K + L + +M+K
Sbjct: 363 MQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMLDTVFNGAYEEMRKSE 422
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR-----LIGL 280
+ R ++L ++ AS+ + +L ++ S + + LL LP + + L+G+
Sbjct: 423 IMCRRISLTIRWASYRYQQYTKSLIQHSDDSATLRRAVDGLL---LPHAAKYSEMCLLGV 479
Query: 281 RVTQF 285
R++
Sbjct: 480 RLSDL 484
>gi|261364541|ref|ZP_05977424.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
gi|288567106|gb|EFC88666.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
Length = 352
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 152/287 (52%), Gaps = 15/287 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTHNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+ +LP+
Sbjct: 122 EVATEIRAAIFAEIGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--IMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKALLYR--KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED +L L +AE L + ++ + + +TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLSLEQAGGHLPHLAEDLWRQITRKNVEAKGVTLKLKTHDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
+ TR++T + + +L A L++ P + RLIG+ V
Sbjct: 295 IITRSLTYSSVLPDIDALLCAAQTLMQRVPPQHEDAFRLIGIGVNHL 341
>gi|425743150|ref|ZP_18861241.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
gi|425484302|gb|EKU50707.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
Length = 351
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 155/287 (54%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP ++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPHVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP+
Sbjct: 120 EVAMHIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 233
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 234 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 294 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|261334855|emb|CBH17849.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
gi|261334857|emb|CBH17851.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
Length = 570
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 160/301 (53%), Gaps = 24/301 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P D Y S++ R++ +YDPN++ LD+ L+++ + R
Sbjct: 183 MPGFLALKICPNLLLLPPDDDSYYLESNIVRRIVAEYDPNYIVVGLDDFTLEVSAYIERF 242
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 243 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTREDVM 302
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ + GI T ++ + LC + ++ F L +G+
Sbjct: 303 TYVRDLGLRSVPGVGKVTEALLKGL-GITTLGDIHDRRVELCYILHNNLFRFLLGASIGI 361
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+F V K L+ + I E +M++
Sbjct: 362 MQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEMIYSIFEEAYEEMRQNE 421
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR-----LIGL 280
+ R ++L ++ +S+ + +L ++ S + + LL LP + + L+G+
Sbjct: 422 MLCRQISLLVRWSSYRYQQYTKSLIQHSDDSATLRRAVDGLL---LPHAAKYSEMCLLGV 478
Query: 281 R 281
R
Sbjct: 479 R 479
>gi|293604743|ref|ZP_06687143.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
gi|292816912|gb|EFF75993.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
Length = 360
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 161/306 (52%), Gaps = 21/306 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A +LCP+ I+VP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 60 MSAMRAERLCPDAIYVPPDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYLDVTH--NKG 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S E+A+ +R + EE GLT SAG+APN+ LAK+ SD NKP+GQFV+ + V+ F
Sbjct: 118 GLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVIRPTK--VLEF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+RK+ G+GKVT+ L + GI+T ++ A + + G+
Sbjct: 176 LQPLPVRKVPGVGKVTQARL-EQLGIHTVGDLATHSLEELAHYFGRYGRRLYELARGIDE 234
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ + +S+E TFS ED L L + +A + K+G GRT+ LKLKT
Sbjct: 235 REVQTDQPLQQVSAETTFS--EDIRLDALGEAIDRMAGKVWDQALKKGALGRTVVLKLKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNEDKVRAPS 294
F + TR+ T S+ ++ A +L + ELP RL G+ ++ F +
Sbjct: 293 DRFRILTRSQTSLNPPGSAAELAAVARLLCERVELPPETLYRLAGVGMSNF--------A 344
Query: 295 DPTQKT 300
DP +++
Sbjct: 345 DPAEQS 350
>gi|390933370|ref|YP_006390875.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389568871|gb|AFK85276.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 379
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 162/297 (54%), Gaps = 11/297 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++A+ LCP +F+P F +Y S+ + S+DEAYLD+T++ +
Sbjct: 57 MPMYMAKTLCPHGVFLPVRFQRYREVSEKVFDILYSVTDIVEPLSIDEAYLDVTDIDKNP 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+G V+ D V +
Sbjct: 117 E----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMVITED--MVPDIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
L + K+ GIGK + L+ + G+ +++L+ L +F + + + G+ S
Sbjct: 171 RPLSVSKVYGIGKKSSERLKKI-GVEKVDDLLKLSQDELRNIFGKYGKEIYDRIR-GIDS 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI E T T D LL + L A ++S++++ EGL RT+T+K+KT+
Sbjct: 229 RPVETYRETKSIGKETTLKKDTSDVDLLLKYLRGFANIVSSELKSEGLYCRTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 294
+F V TR+ TL +YI +DI A S+ +A++ +RLIGL V+ + K++ S
Sbjct: 289 NFIVHTRSRTLNEYIDLPDDIYSVAESIFKEAKIIQPVRLIGLSVSNLSAIKIKQLS 345
>gi|254670271|emb|CBA05549.1| DNA polymerase IV [Neisseria meningitidis alpha153]
Length = 400
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 111 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 169
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 170 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 227
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 228 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 282
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 283 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 342
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 343 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 386
>gi|288929132|ref|ZP_06422977.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
gi|288329234|gb|EFC67820.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
Length = 367
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 153/302 (50%), Gaps = 23/302 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G A++LCPELIF+P DF KY S ++F +Y SLDEAYLD+T+ +
Sbjct: 62 MSGVQAKRLCPELIFLPPDFKKYKQVSQQVHEIFHRYTDLVEPLSLDEAYLDVTQ--NKL 119
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI ++IA+ +R + E LT SAGV+ N+ LAKV SD KP+G V+ R M F
Sbjct: 120 GIELAVDIAQRIRQEIRNELHLTASAGVSFNKFLAKVASDFRKPDGITVIHPSR--AMHF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I +LPI G+G T + + N + L VF + + + + +
Sbjct: 178 IDNLPITDFWGVGHKTAETMHAMGIFNGADLRQLSRLRLRQVFGKA-GEMYYNFARAIDP 236
Query: 180 TNTPQARFRKSISSERTFSVTEDKA-------LLYRKLAEIAEMLSADMQKEGLRGRTLT 232
RKS+ ERTF ED + LYR + E+ E L +K +GRTLT
Sbjct: 237 RPVEPHWIRKSVGCERTFD--EDSSNPTVLLTELYRLVLELVERL----KKNDFKGRTLT 290
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 289
LK+K F TR+ T + EDIL A LL +E+ S +RL+G++V+ N++
Sbjct: 291 LKVKFHDFTQITRSRTAPHVLRKKEDILPIAKALL-SEVNYSGRPIRLLGVQVSNMNDEP 349
Query: 290 VR 291
R
Sbjct: 350 HR 351
>gi|302382770|ref|YP_003818593.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
gi|302193398|gb|ADL00970.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
Length = 358
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 164/307 (53%), Gaps = 14/307 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+L+FVP F Y S + +F Y P SLDEAYLD+T+ R
Sbjct: 61 MPSTTALRQCPDLVFVPPRFEVYRAVSKQIQAIFADYTPLVEPLSLDEAYLDVTDNLR-- 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + E A E+R + EE GLT SAG++ N+ LAK+ SD KPNGQFV+P R F
Sbjct: 119 GLPTASETAVEIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGRGE--AF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+++ G+G VT + + GI T E++ ++ L + ++ ++ G
Sbjct: 177 VEILPVKRFYGVGPVTAAKMSRL-GIETGEDLRRQSLALLQQHFGKSGPWYYAISRGEDH 235
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS SE TF +T+ A+ LA ++ +K GRT+T+K++
Sbjct: 236 RAVNPNRERKSSGSETTFGSDLTDPSAIEAGVLAMTGDVWGW-CEKSDAYGRTVTVKVRW 294
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKVRAPSD 295
A F+ TR+ + + ++S + + + + +L+++ P + +RL+G+ ++ F KV APS
Sbjct: 295 ADFQQSTRSRSFPEPVTSKDRLEEISLLLVRSLYPPAKGIRLVGVSLSNF---KVPAPSA 351
Query: 296 PTQKTLT 302
Q L
Sbjct: 352 SDQLALA 358
>gi|325921296|ref|ZP_08183156.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
gi|325548263|gb|EGD19257.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
Length = 359
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 161/294 (54%), Gaps = 15/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+T+ +
Sbjct: 56 MPAMRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ LP+ +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 172 LLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 230 ERPVEPDQEVQSVSSEDTFS--EDIALDALDPHILRLAEKTWLATRRTERIGRTVVLKLK 287
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
T++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 288 TSNFRILTRSYTPEQPPASLEALAEIALALTRRVELPADTRYRLVGVGLSGFSD 341
>gi|344199852|ref|YP_004784178.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
gi|343775296|gb|AEM47852.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
Length = 399
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 150/286 (52%), Gaps = 13/286 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
AR LCP+ IF+ Y S L + Y P SLDEA+LD T + GI +
Sbjct: 94 ARSLCPQAIFLRPRMEAYREASRLVMGILRCYTPLVEPLSLDEAFLDATAATAD-GILAV 152
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+IA E+R + E GLT SAGV+ N+LLAK+ SD KPNG FV+P +R +TF++ LP+
Sbjct: 153 QIAREIRARIERETGLTASAGVSYNKLLAKLASDWRKPNGLFVVPPERG--LTFLAPLPV 210
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
K+ G+G T L + GI+T ++ L A F T +F + G+
Sbjct: 211 SKLHGVGPATVKKLSSM-GIHTVLDLRNMSREALIAQFG-KTGLWFYEIARGIDLRPVQP 268
Query: 185 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
+R RKS+ +ERTF D ++ L ++A ++A +Q GL GRT+++K + F
Sbjct: 269 SRQRKSVGTERTFPKNLADPKVMLATLQQMAGQVAARLQVLGLAGRTVSIKARFPDFATV 328
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELP------VSLRLIGLRVT 283
TRA T + I +E I LL +P S+RL+G+ V+
Sbjct: 329 TRAHTDAQAIWRTEAISALLPGLLAKAIPTRLPVHASVRLLGVTVS 374
>gi|300773786|ref|ZP_07083655.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
gi|300759957|gb|EFK56784.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 166/307 (54%), Gaps = 20/307 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A +LCP+LIF F Y S R++F +Y SLDEAYLD+TE ++GI S
Sbjct: 65 ALQLCPQLIFTRPRFDVYKEVSQQIRQIFLRYTDLIEPLSLDEAYLDVTE--DKQGIGSA 122
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
I+IA +++ + EE LT SAGV+ N+ +AK+ SDINKP+G F+ P+ V+ F+ L
Sbjct: 123 IDIARQIKQEIREELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSK---VVAFMEHL 179
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
PI K G+GKVT ++ + GI+ +M Q T FF ++ G+ +
Sbjct: 180 PIEKFFGVGKVTASKMKKL-GIHRGADMKQWTQEALTRHFGKTGKFFYNIVRGVDNRPVQ 238
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R KSIS E TF+ D +L L E++ L+ + + L G+T+TLK+K + F
Sbjct: 239 PNRQTKSISVEDTFAQDIADLQVLEDILKELSGRLAKRLNAKQLAGKTVTLKVKFSDFSQ 298
Query: 243 RTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVTQF-NEDKVRAPSDPT 297
TR++T + ++ E + + AS LL AE+ V RL+G+ V+ F ED P
Sbjct: 299 ATRSMTSLEVVTGEEVLYQIASELLNKVSLAEMKV--RLLGVGVSNFTGED----PDQQI 352
Query: 298 QKTLTNF 304
+ LT F
Sbjct: 353 NRQLTLF 359
>gi|21244347|ref|NP_643929.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
gi|24211643|sp|Q8PGJ4.1|DPO4_XANAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21110002|gb|AAM38465.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
Length = 359
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 156/293 (53%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DFT+Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|421565721|ref|ZP_16011491.1| DNA polymerase IV [Neisseria meningitidis NM3081]
gi|402343298|gb|EJU78447.1| DNA polymerase IV [Neisseria meningitidis NM3081]
Length = 352
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ +G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|169632191|ref|YP_001705927.1| DNA polymerase IV [Acinetobacter baumannii SDF]
gi|169150983|emb|CAO99608.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii]
Length = 363
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 152/280 (54%), Gaps = 11/280 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP+
Sbjct: 120 EVAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI G+GKVT+ L+ + ++T + LQK ++L F +L G+ +
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQKIEEAVLVHHFGKYGQQLYL-YAQGIDNRPVQ 234
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQSYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 244 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGL 280
+ + + I S +D+++ +LL + +P RLIG+
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGV 334
>gi|357418538|ref|YP_004931558.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
gi|355336116|gb|AER57517.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
Length = 366
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 151/299 (50%), Gaps = 25/299 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+LCP+ IFV DF +Y S R++F + SLDEAYLD+T R
Sbjct: 56 MPGVTARRLCPQAIFVAPDFARYRAVSRQIREIFLAHTDLVEPLSLDEAYLDVT-APRIA 114
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S A+ +R ++E GLT SAG+APN+ LAK+ SD NKPNGQ+V+ + V F+
Sbjct: 115 SSSATATAQAIRAQIFETTGLTASAGIAPNKFLAKIASDWNKPNGQYVIKPAQ--VEAFL 172
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM---------LQKGSLLCAVFSHSTADFFL 171
+ L + +I G+GKV E L ++ G+ T ++ L+ G A++ +
Sbjct: 173 TPLKVGRIPGVGKVAERKLAEL-GVATVGDLRRFTLDELQLRFGRFGAALYRRAR----- 226
Query: 172 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
G+ + +SIS+E TF V A L +A +A+ K G T+
Sbjct: 227 ----GIDERPVQPDQQVQSISAEDTFEVDLPLAELGPAIARMADKAWRATGKTARIGHTV 282
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPV--SLRLIGLRVTQFNE 287
LKLKTA F + TR+ T + SS A L + +LPV RL+G+ + F E
Sbjct: 283 VLKLKTAQFRILTRSFTPEAPPSSLAQFTAIALALRDRVDLPVDTRYRLVGVGLAGFRE 341
>gi|421563647|ref|ZP_16009463.1| DNA polymerase IV [Neisseria meningitidis NM2795]
gi|421907165|ref|ZP_16337050.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|393291682|emb|CCI73036.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|402340132|gb|EJU75335.1| DNA polymerase IV [Neisseria meningitidis NM2795]
Length = 352
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 156/287 (54%), Gaps = 21/287 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHTVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L + P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARSTDERP 234
Query: 184 --QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R R IS+E ++ ED L L +AE L + ++ + +++TLKLKT
Sbjct: 235 VEAERERLQISTE--ITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYD 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 293 FRIITRTLTYSSILPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|433677041|ref|ZP_20509074.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817838|emb|CCP39428.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
Length = 353
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 157/296 (53%), Gaps = 19/296 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T E
Sbjct: 56 MPALRAERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYLDVTAPKGEL 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
+ EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+ P+ V F
Sbjct: 116 A-TATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQ---VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
++ LP+ K+ G+GKV + L ++ GI T ++ G S G+
Sbjct: 172 LTPLPVSKVPGVGKVMQAKLAEL-GIVTVGDLRTHGEAELEARFGSFGLRLYQRARGIDQ 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ +SISSE TF+ ED AL R LAE + +A + E + RT+ LK
Sbjct: 231 RPVEADQQVQSISSEDTFA--EDLALDALEPAIRLLAE--KTWTATRRTERI-ARTVVLK 285
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S + + A L + +LP S RL+G+ + F+E
Sbjct: 286 LKTAQFRILTRSFTPEQPPDSLQALTDIALALRQRVDLPASTRYRLVGVGLAGFHE 341
>gi|294625057|ref|ZP_06703705.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292600642|gb|EFF44731.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 359
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 157/293 (53%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T+ +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFSD 341
>gi|416161050|ref|ZP_11606273.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|418288632|ref|ZP_12901092.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|418290884|ref|ZP_12902979.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|433473835|ref|ZP_20431195.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|433481353|ref|ZP_20438620.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|433484383|ref|ZP_20441607.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|433486655|ref|ZP_20443847.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
gi|325128493|gb|EGC51371.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|372200836|gb|EHP14847.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|372201466|gb|EHP15389.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|432209296|gb|ELK65265.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|432218110|gb|ELK73973.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|432220314|gb|ELK76137.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|432221174|gb|ELK76987.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
Length = 352
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 153/289 (52%), Gaps = 25/289 (8%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T R I
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVT-----RNFKNI 117
Query: 66 ----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 121
E+A+E+R +++ E GLT SAG+A N+ LAK+ SD KPNGQFVLP + VM F+
Sbjct: 118 PYDSEVAKEIRAAIFAETGLTASAGIASNKFLAKIASDWRKPNGQFVLPPHK--VMAFLE 175
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+
Sbjct: 176 TLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGT 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
P R+ + ++ ED L L +AE L + ++ + +++TLKLKT
Sbjct: 231 DERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKT 290
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 291 YDFRIITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|182418367|ref|ZP_02949662.1| DNA polymerase IV [Clostridium butyricum 5521]
gi|237666322|ref|ZP_04526307.1| DNA polymerase IV [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182377749|gb|EDT75293.1| DNA polymerase IV [Clostridium butyricum 5521]
gi|237657521|gb|EEP55076.1| DNA polymerase IV [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 348
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 157/298 (52%), Gaps = 20/298 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP F+A++ CP IFV + +YT S K+ P S+DE YLD+++ R
Sbjct: 57 MPIFMAKEKCPNGIFVAGRYGRYTKISQEIFKILSDVTPIIEQVSIDEGYLDLSQ---SR 113
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+GI+ A ++ V++E GLT S G++ N+ LAK+ SD NKPNG + R + +
Sbjct: 114 FENGIDAARYIKNKVFKEIGLTISVGISYNKFLAKLASDWNKPNG--IKEISRSMIPDIL 171
Query: 121 SSLPIRKIGGIGKVTEHILRD--VFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
LP+ KI G+GK++ L + +F I M +K + D + + G+
Sbjct: 172 LPLPLSKIHGLGKISVGKLNNMGIFYIKDLYNMEKK--FYIEYLGKNGLDIYDRI-RGID 228
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLA----EIAEMLSADMQKEGLRGRTLTL 233
+ R RKS+ ERT T++K L + L EI EML A + + G+T+TL
Sbjct: 229 NRKIETIRERKSVGKERTLKFDTDNKEELLQYLKEFSFEIEEMLCA----KNVVGKTVTL 284
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKV 290
K KT FE TR+ TL YIS EDI + LL++ EL +LRLIG+ ++ F E ++
Sbjct: 285 KFKTKDFENHTRSRTLNNYISYHEDIFNVSKELLESEELKSNLRLIGVSISSFKEKEI 342
>gi|194098704|ref|YP_002001766.1| DNA polymerase IV [Neisseria gonorrhoeae NCCP11945]
gi|193933994|gb|ACF29818.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
NCCP11945]
Length = 368
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 153/287 (53%), Gaps = 17/287 (5%)
Query: 7 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 66
++LCP+ ++VP F Y S VF +Y S DEAYLD+T + +G E
Sbjct: 80 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYLDVTRNFKNIPYAG-E 138
Query: 67 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 126
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 139 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 196
Query: 127 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 197 KIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHPV 251
Query: 185 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F +
Sbjct: 252 KAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 311
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQF 285
TR +T + +L+ A +L+ A +P + RLIG+ V +
Sbjct: 312 ITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGVGRL 357
>gi|311105525|ref|YP_003978378.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
gi|310760214|gb|ADP15663.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
Length = 359
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 156/299 (52%), Gaps = 17/299 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A +LCP I+VP DF +Y S R++F ++ SLDEAYLD+T + G+ S
Sbjct: 64 AERLCPHAIYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYLDVT--INKLGLPSA 121
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+G FV+ + V+ F+ LP
Sbjct: 122 TEVAQVIRHQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPAK--VLAFLEPLP 179
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
+RK+ G+GKVT+ L + GI+T ++ + + + G+
Sbjct: 180 VRKVPGVGKVTQARL-EQLGIHTVGDLATHSAQELEHYFGRYGRRLYELARGIDEREVQT 238
Query: 185 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 244
+ + +SSE TFS + + +AE + K+G GRT+ LKLKT F + T
Sbjct: 239 DQPLQQVSSETTFSQDIRLDAVGEAIDRMAERVWDQALKKGALGRTVVLKLKTDRFRILT 298
Query: 245 RAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNEDKVRAPSDPTQKT 300
R+ T S+ ++ A +L + +LP RL G+ ++ F +DP ++T
Sbjct: 299 RSQTSPGPPGSAAELAAVARLLCERVDLPPETLYRLAGVGMSNF--------ADPQEQT 349
>gi|168179226|ref|ZP_02613890.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
gi|182669759|gb|EDT81735.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
Length = 349
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 155/294 (52%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + +
Sbjct: 116 ---PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQD--MIPSIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
LPI KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+F+ TR+ T+ YI ++I A +L +RLIGL V+ ++K++
Sbjct: 289 NFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGKNKIK 342
>gi|93117311|gb|ABE99573.1| DinB [Neisseria meningitidis]
gi|93117319|gb|ABE99577.1| DinB [Neisseria meningitidis]
Length = 336
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 13/271 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELP 272
+ TR +T + +L+ A +L+ A +P
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVP 324
>gi|22095624|sp|Q92XH8.2|DPO42_RHIME RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
Length = 354
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R
Sbjct: 56 MPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGL 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ F+
Sbjct: 116 KLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGP--DFV 172
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 173 QALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDER 231
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI +E TF D L + + + + G+RG+T+TLK+K A
Sbjct: 232 KVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWAD 291
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 292 FTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 340
>gi|78049296|ref|YP_365471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325924733|ref|ZP_08186170.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346726392|ref|YP_004853061.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
gi|123584151|sp|Q3BP42.1|DPO4_XANC5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|78037726|emb|CAJ25471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325544825|gb|EGD16171.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346651139|gb|AEO43763.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
Length = 359
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 156/293 (53%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPTQTRYRLVGVGLSGFSD 341
>gi|350572217|ref|ZP_08940522.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
gi|349790473|gb|EGZ44382.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
Length = 383
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 158/290 (54%), Gaps = 15/290 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ +++P +F Y S VF ++ SLDEAYLD+T + +
Sbjct: 94 AQRLCPQAVYIPPNFPLYREISQQVHAVFRQHTDLIEPLSLDEAYLDVTRNFQNIPYAS- 152
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A+ +R ++ + GLT SAGVAPN+ LAK+ SD KPNGQFVLP +++A F+ +LP
Sbjct: 153 QVAKTIRAEIFRQTGLTASAGVAPNKFLAKIASDWRKPNGQFVLPPEKVA--EFLHTLPP 210
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEML--QKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + GI+T ++L ++G L +F + + G+ +
Sbjct: 211 EKIPGVGKVTRLKMQSL-GIDTVGDLLRFERGE-LANLFGKWGYRLY-ELARGIDNRAVK 267
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
+R R IS+E T + ED L + L +A+ L ++ R++TLKLKTA F
Sbjct: 268 PSRERVQISTEIT--LPEDLPLNQILLHLPHLADDLWQQAARKKAAFRSVTLKLKTADFR 325
Query: 242 VRTRAVTLQKYISSSEDILKHA---SVLLKAELPVSLRLIGLRVTQFNED 288
+ TR+ T + + +L+ A S L L + RLIGL V+ +
Sbjct: 326 IITRSQTFSSPLPDAASLLQAAHQISTRLPHTLHATYRLIGLGVSHLEPN 375
>gi|433615571|ref|YP_007192366.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
gi|429553818|gb|AGA08767.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
Length = 369
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R
Sbjct: 71 MPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGL 130
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ F+
Sbjct: 131 KLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGP--DFV 187
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 188 QALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDER 246
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI +E TF D L + + + + G+RG+T+TLK+K A
Sbjct: 247 EVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWAD 306
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 307 FTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 355
>gi|293610008|ref|ZP_06692309.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827240|gb|EFF85604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 351
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 154/286 (53%), Gaps = 11/286 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A TFI LP+
Sbjct: 120 EVAMQIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--TFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 178 KKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQLYLYAQ-GIDHRPVQ 234
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLEKKQLNARGVNIKLKLKNFQTL 294
Query: 244 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 295 QHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|193782767|ref|NP_436520.4| DNA polymerase IV [Sinorhizobium meliloti 1021]
gi|193073223|gb|AAK65932.2| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti 1021]
Length = 369
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R
Sbjct: 71 MPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGL 130
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ F+
Sbjct: 131 KLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGP--DFV 187
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 188 QALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDER 246
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI +E TF D L + + + + G+RG+T+TLK+K A
Sbjct: 247 KVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWAD 306
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 307 FTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 355
>gi|93117313|gb|ABE99574.1| DinB [Neisseria meningitidis]
Length = 336
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 13/271 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELP 272
+ TR +T + +L+ A +L+ A +P
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVP 324
>gi|93117305|gb|ABE99570.1| DinB [Neisseria meningitidis H44/76]
Length = 335
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 145/266 (54%), Gaps = 12/266 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLL 267
+ TR +T + +L+ A +L+
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM 320
>gi|71756035|ref|XP_828932.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834318|gb|EAN79820.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 158/305 (51%), Gaps = 24/305 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P D Y S++ R++ +YDPN++ LD+ L+++ + R
Sbjct: 184 MPGFLALKICPNLLLLPPDDDSYYLESNIVRRIVAEYDPNYIVVGLDDFTLEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTRGDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ GI T ++ + LC + ++ F L +G+
Sbjct: 304 TYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFRFLLGASIGI 362
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+ + K + + + +M+K
Sbjct: 363 MQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSE 422
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR-----LIGL 280
+ R ++L ++ AS+ + +L +Y S + + L+ LP + + L+G+
Sbjct: 423 IMCRRISLTIRWASYRYQQYTKSLIQYSDDSATLRRAVDELM---LPHAAKYSEMCLLGV 479
Query: 281 RVTQF 285
R++
Sbjct: 480 RLSDL 484
>gi|146338544|ref|YP_001203592.1| DNA polymerase IV [Bradyrhizobium sp. ORS 278]
gi|146191350|emb|CAL75355.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 278]
Length = 368
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 153/296 (51%), Gaps = 19/296 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV F Y S R +F ++ P SLDEAYLD+T+
Sbjct: 70 MPSMTAKRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTD----- 124
Query: 61 GISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +IA ++R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + A
Sbjct: 125 NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQYVISPETGA- 183
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ LP+ + GIG T + GI+T ++ + ++ + G
Sbjct: 184 -AFVEGLPVGRFHGIGPATAAKF-NALGIHTGLDIRNQTLPFLQQHFGKAGSYYYWISRG 241
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ---KEGLRGRTLTL 233
+ R RKSI +E TF+ D AE+ ++ + G RGRT+TL
Sbjct: 242 IDHRPVRANRIRKSIGAENTFAT--DLIEFEPMAAELQPLIDKVWRHCDATGNRGRTVTL 299
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
K+K A F+V TR+ ++ +SS ++ + + LL+AELP+ +RL+G+ ++ E
Sbjct: 300 KVKFADFDVITRSRSVATAVSSRAELERLSLALLQAELPLPKPVRLLGVSLSSLQE 355
>gi|418517734|ref|ZP_13083893.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410705578|gb|EKQ64049.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 359
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 155/293 (52%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTELVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|418520920|ref|ZP_13086967.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703343|gb|EKQ61837.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 359
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 155/293 (52%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|27375972|ref|NP_767501.1| DNA polymerase IV [Bradyrhizobium japonicum USDA 110]
gi|27349111|dbj|BAC46126.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 110]
Length = 366
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 154/295 (52%), Gaps = 17/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R++F ++ P SLDEAYLD+TE
Sbjct: 69 MPSVTAKRQCPDLIFVRPRFEVYKAISRQIREIFAEHTPIIEPLSLDEAYLDVTE----- 123
Query: 61 GISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +A + +R + E GL SAG++ N+ LAK+ SD KPNGQFV+ +
Sbjct: 124 NLQGIPLARDVALRIREKIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGP- 182
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGL 175
F+ +LP+ K GIG T + + GI T +M Q + A F + A ++ +
Sbjct: 183 -AFVEALPVGKFHGIGPATSAKM-NALGIFTGRDMRNQTLEFMNANFGKAGA-YYYWISR 239
Query: 176 GLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
G+ R RKSI +E TF D+ L L + + + + G RGRT+TLK
Sbjct: 240 GVDERPVRANRIRKSIGAETTFQADLDEFDALVAALKPLVDKVWRHCEATGNRGRTVTLK 299
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNE 287
+K A FE+ TR+ + ++ +D+ + LL+ E+P+ +RL+G+ ++ +
Sbjct: 300 IKFADFEIITRSRSAPTPVAGRDDLERLTCGLLEVEMPLPKRVRLLGVSLSALQD 354
>gi|170748058|ref|YP_001754318.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
gi|170654580|gb|ACB23635.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
Length = 360
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 18/309 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+LCP+L+FV F Y S+ R VF ++ +LDEAYLD+TE
Sbjct: 62 MPSATARRLCPDLLFVKPRFEVYRAISEEIRAVFARHTAVIEPVALDEAYLDVTENL--L 119
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + +A+ +R + E GL SAGV+ N+ LAKV SD KPN FV+ M F
Sbjct: 120 GLPTATAVAKAIRAEILERTGLVASAGVSYNKFLAKVASDHRKPNALFVI-TPAMG-PDF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+++LPI + G+G VTE ++ + GI T ++ L F + A ++ +V G+
Sbjct: 178 VAALPIGRFHGVGPVTEAKMKRL-GIETGADLRAWTPERLRETFGSAGA-YYHAVARGID 235
Query: 179 STNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKSI +E TFS +D A +L +LA + + + A +G+R RT+TLKL
Sbjct: 236 GRPVRAHRVRKSIGAETTFS--DDTAAFEVLAARLAPLFDKVWAAADAKGMRARTVTLKL 293
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAP 293
K + F TRA +L ++ + + LL P+ S RLIG+ ++ F +D AP
Sbjct: 294 KFSDFAQVTRARSLPVPVADRAGLERIGLDLLAGLFPLRRSARLIGVSLSGFAQD---AP 350
Query: 294 SDPTQKTLT 302
P Q L
Sbjct: 351 EAPLQLGLA 359
>gi|440224781|ref|YP_007338177.1| DNA polymerase IV (Pol IV) [Rhizobium tropici CIAT 899]
gi|440043653|gb|AGB75631.1| DNA polymerase IV (Pol IV) [Rhizobium tropici CIAT 899]
Length = 371
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 155/301 (51%), Gaps = 10/301 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP LIFVP F Y S R++F +Y SLDEAYLD+T+ +
Sbjct: 70 MPSVTAKRKCPNLIFVPPRFDVYRAVSQQIREIFAEYTSMIEPLSLDEAYLDVTQNHKGM 129
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+RT + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 130 EIA-TEIALEIRTRIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 185
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T + +GI T ++ K +F + G+
Sbjct: 186 VETLPVKKFHGVGPATAERMHK-YGIETGLDLKSKSLAFLQEHFGKAGPYFYGIARGIDE 244
Query: 180 TNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKSI +E TF +D L +L +A+ + + G +T+T+K+K +
Sbjct: 245 RQVKPDRIRKSIGAEDTFVEDIDDLELATAELRPLAQKVWRYCETGGFSAKTVTVKIKYS 304
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF-NEDKVRAPSD 295
F TR+ T ++ + +L+ A+ LL P + +RL+G+ ++ NE+ S
Sbjct: 305 DFTQATRSRTSSLPVADAGAVLETAAALLATVHPFARPIRLLGITLSSLTNEEADDGRSQ 364
Query: 296 P 296
P
Sbjct: 365 P 365
>gi|260593234|ref|ZP_05858692.1| DNA-directed DNA polymerase [Prevotella veroralis F0319]
gi|260534791|gb|EEX17408.1| DNA-directed DNA polymerase [Prevotella veroralis F0319]
Length = 362
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 163/293 (55%), Gaps = 17/293 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A++ CP+LI VP F +Y S +VF +Y SLDEA+LD+TE ++GI+
Sbjct: 61 AKRRCPDLIIVPCHFERYKEVSGQIHEVFHEYTDLVEPISLDEAFLDVTE--NKKGIALA 118
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
++IA++++ ++E LT SAGV+ N+LLAK+ SDI KPNG +++ +R M FI+ LP
Sbjct: 119 VDIAKDIKQKIFERTSLTASAGVSYNKLLAKIASDIRKPNGIYIVHPER--AMNFIARLP 176
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNT 182
I K+ GIG T + ++ G+ T E+ L+K S L VF + G+
Sbjct: 177 IEKLWGIGPKTAIKMHEM-GVFTGEQ-LRKISYNHLVQVFG-KMGKVYYDFSRGIDERPV 233
Query: 183 PQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
+R RKS+ ERTF ED K+ + +L I L + + GRTLTLKLK +
Sbjct: 234 VISRERKSVGCERTF--LEDLHVKSKIVIELYHITLELVERLSRSKFEGRTLTLKLKWDA 291
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLK-AELPV-SLRLIGLRVTQFNEDKV 290
TR++T +K + + EDIL A LL+ E +RL+GL V+ D++
Sbjct: 292 TTQITRSLTQEKILRTKEDILPLAKQLLRETEYETRPIRLMGLSVSFPTNDEI 344
>gi|78358660|ref|YP_390109.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
gi|78221065|gb|ABB40414.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
Length = 385
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 152/290 (52%), Gaps = 8/290 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+LCP +FV +Y S +V ++ P AS+DEAYLD T R
Sbjct: 51 MPSGQARRLCPHAVFVKGRMHRYKEISAQVMQVLHEFSPLVEQASVDEAYLDATGSARLF 110
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G E+A +R +V E LTCS GVAP + LAK+ SD+NKP+G FVL D +A F+
Sbjct: 111 GPPE-EMARRIRAAVREAVSLTCSVGVAPVKFLAKIASDVNKPDGLFVLQPDEVA--GFL 167
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+ I G+G+ L+ G+ T ++L+ + F F + G+
Sbjct: 168 AVLPVGDIPGVGRHFAGQLQ-ALGVRTAGDVLRYPETFWQRRFGKGGLGLF-ARAQGIDP 225
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
KS S+E TF T+D+ LL L + AE + + ++ GL GRT+TLK+K A
Sbjct: 226 RVVEPYTQAKSESAENTFEEDTDDRELLKTWLLKQAERVGRNQRRMGLSGRTVTLKVKFA 285
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNE 287
F TR+ TL SS+ I A+ LL + LP +RLIG+ ++ + E
Sbjct: 286 DFRTVTRSRTLAAPTSSTRVIYDTAAALLDEMGLPQKVRLIGVGLSHYAE 335
>gi|390444078|ref|ZP_10231861.1| DNA polymerase IV [Nitritalea halalkaliphila LW7]
gi|389665309|gb|EIM76780.1| DNA polymerase IV [Nitritalea halalkaliphila LW7]
Length = 367
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 158/293 (53%), Gaps = 17/293 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG +A + CP L+FVP F+ Y S +++F + SLDEA+LD+TE +
Sbjct: 70 MPGKLAIRKCPHLLFVPPRFSVYKEVSQQVQEIFFSFTDFVEPLSLDEAFLDVTE--NKF 127
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMT 118
G S I +A +R +++E GLT SAGV+ N+ LAK SD+ KPNGQ +LP D
Sbjct: 128 GYKSAIYMAYLIRKRIFQETGLTASAGVSYNKFLAKTASDLRKPNGQAVILPED---AAE 184
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLG 176
F+ LP+ K G+GKVT L + FGI + ++ K L + H + + + G
Sbjct: 185 FLERLPVEKFYGVGKVTAAKL-NRFGIYSGADL--KSFSLAFLTKHFGKSGQHYYQIVRG 241
Query: 177 LGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + R RKSIS E TF ++ L + L + E L ++K+GL+GRT LK
Sbjct: 242 IHDSPVQPDRMRKSISVESTFEQDISARNELDF-ALQRLLEDLKKRLRKQGLKGRTAVLK 300
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 286
LK + F +TR+ + + YI E + + LL+ E L +RL+G+ + + N
Sbjct: 301 LKYSDFSQQTRSRSQEHYI-PEEALEEFYRALLEQEPLKQPIRLMGVGLQKLN 352
>gi|384420785|ref|YP_005630145.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463698|gb|AEQ97977.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 369
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 161/299 (53%), Gaps = 15/299 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T+ +
Sbjct: 66 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KT 123
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F
Sbjct: 124 GMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAF 181
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ L + +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 182 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGID 239
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 240 ERPVEPDQDVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLK 297
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNEDKVRA 292
T++F + TR+ T + S E + + A L + ELP RL+G+ ++ FN+ + RA
Sbjct: 298 TSNFRILTRSCTPGQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFNDVEERA 356
>gi|427426239|ref|ZP_18916302.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
gi|425696945|gb|EKU66638.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
Length = 351
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 153/286 (53%), Gaps = 11/286 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A TFI LP+
Sbjct: 120 EVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--TFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 178 KKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQLYLYAQ-GIDHRPVQ 234
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLEKKQLNARGVNIKLKLKNFQTL 294
Query: 244 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 295 QHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|315639680|ref|ZP_07894820.1| DNA-directed DNA polymerase IV [Enterococcus italicus DSM 15952]
gi|315484641|gb|EFU75097.1| DNA-directed DNA polymerase IV [Enterococcus italicus DSM 15952]
Length = 374
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 159/289 (55%), Gaps = 17/289 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ +F+P ++ KY S R++F +Y S+DEAYLD+TE + + S I
Sbjct: 77 AYELCPQAVFLPGNYEKYRAVSKQVREIFQRYTDLVEPMSIDEAYLDVTE-NKIQAKSAI 135
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
++A+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP G V+P D +A F+ LP
Sbjct: 136 KVAKCIQYDIWHELQLTCSAGVSYNKFLAKLASDYQKPRGLTVVMPEDAVA---FLKKLP 192
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADFFLSV-GLGLGSTNT 182
I K G+GK T + ++ GI+T ++ +K L F F V G+ L T
Sbjct: 193 IEKFHGVGKKTVPKMHEL-GIHTGADLYEKDEFFLIQQFGKMGYSLFRKVRGIHLSPVVT 251
Query: 183 PQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ ERT+ TE+ L +L +++E ++ ++K G + LK++TA
Sbjct: 252 --TRERKSVGKERTYGTLLTTEESCL--TQLRQLSEEVADLLKKLERHGNIVVLKMRTAD 307
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F +T+ +TL + E+I ASVL + E V +RL+G+ VT N
Sbjct: 308 FVTKTKRMTLNRATHRKEEIFSVASVLFEEENQVDRGIRLLGVTVTGLN 356
>gi|408785779|ref|ZP_11197520.1| DNA polymerase IV [Rhizobium lupini HPC(L)]
gi|408488247|gb|EKJ96560.1| DNA polymerase IV [Rhizobium lupini HPC(L)]
Length = 290
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 148/281 (52%), Gaps = 9/281 (3%)
Query: 13 LIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELR 72
+IFV F Y S R++F +Y P SLDEAYLD+TE ++ I+ EIA E+R
Sbjct: 1 MIFVKPRFEVYRAVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKDMPIA-TEIALEIR 59
Query: 73 TSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRKIGGI 131
+ GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ L ++K G+
Sbjct: 60 ARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEQLAVKKFHGV 116
Query: 132 GKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 191
G T + + GI T ++ K + +F + G+ R RKS+
Sbjct: 117 GPATAEKMHRL-GIETGADLKAKSLPFLVEHFGKSGPYFYGIARGIDERQVRPDRVRKSV 175
Query: 192 SSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 250
+E TF+ +D L R+L +AE + + + +G G+T+T+K+K + F TR+ T
Sbjct: 176 GAEDTFTADIDDLELATRELRPLAEKVWSYCEAKGFSGKTVTVKIKYSDFTQATRSRTTA 235
Query: 251 KYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDK 289
S++EDIL A+ LL P +RL+G+ ++ DK
Sbjct: 236 IPYSNAEDILDAANTLLAGVYPFKRPVRLLGVTLSSLTNDK 276
>gi|365886913|ref|ZP_09425808.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
gi|365337547|emb|CCD98339.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
Length = 368
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 157/295 (53%), Gaps = 17/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV F Y S R +F ++ P SLDEAYLD+T+
Sbjct: 70 MPSVTAKRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTD----- 124
Query: 61 GISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +IA ++R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + A
Sbjct: 125 NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGA- 183
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ SLP+ + GIG T + GI+T ++ + ++ + G
Sbjct: 184 -AFVESLPVGRFHGIGPATAAKF-NGLGIHTGLDIRNQTLPFLQHHFGKAGSYYYWISRG 241
Query: 177 LGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ R RKSI +E TF+ +TE + + +L + + + + G RGRT+TL+
Sbjct: 242 IDHRPVRANRIRKSIGAENTFATDLTEFEPMAA-ELQPLIDKVWRHCEATGNRGRTVTLR 300
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
+K A F++ TR+ ++ +SS ++ + LL+AE+PV +RL+G+ ++ E
Sbjct: 301 VKFADFDMITRSRSVATAVSSRAELEHLSLALLQAEMPVKKPVRLLGVSLSSLRE 355
>gi|13488542|ref|NP_109549.1| DNA polymerase IV [Mesorhizobium loti MAFF303099]
gi|22095629|sp|Q98NW7.1|DPO43_RHILO RecName: Full=DNA polymerase IV 3; Short=Pol IV 3
gi|14028296|dbj|BAB54888.1| DNA-damage-inducible protein P [Mesorhizobium loti MAFF303099]
Length = 361
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 156/294 (53%), Gaps = 16/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S R VF ++ SLDEAYLD+T+ R
Sbjct: 64 MPSVTAKRKCPELIFVPPRFDVYRAVSAQIRDVFAEHTDLIEPLSLDEAYLDVTQ-NRLN 122
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IAE +R + E GLT SAG++ N+ LAK+ SD NKPNGQFV+ P A F
Sbjct: 123 ISSATTIAEMIRAKILEVTGLTASAGISYNKFLAKMASDQNKPNGQFVITPRHGPA---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ +LP+ K G+G T + + GI T ++ ++ S L F S ++ + +
Sbjct: 180 VETLPVNKFHGVGPATAAKM-EALGIETGADLKERSLSFLQQHFGKSGL-WYYQIARAID 237
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKL 235
R RKSI +E TF+ D L LAE+ +++ + +G+RGRT+TLK+
Sbjct: 238 ERAVDPDRPRKSIGAEDTFAA--DIVDLETSLAELKPLVAKVWGYCEGKGIRGRTVTLKI 295
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
K A F+ TR+ T+ I S D A+ LL + PV +RL+G+ ++ +
Sbjct: 296 KFADFQQITRSRTVAVPIELS-DFEHLAADLLGSVFPVRKGIRLLGVTLSSLGD 348
>gi|384531775|ref|YP_005717379.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
gi|333813951|gb|AEG06619.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
Length = 369
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 148/289 (51%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R
Sbjct: 71 MPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGL 130
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEE+R + E LT SAG++ N+ LAK+ SD KP+G FV+ F+
Sbjct: 131 KLA-TEIAEEIRGRIRAETHLTASAGISYNKFLAKMASDQRKPDGLFVITPKHGP--DFV 187
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 188 QALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDER 246
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI +E TF D L + + + + G+RG+T+TLK+K A
Sbjct: 247 EVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWAD 306
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 307 FTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 355
>gi|325860095|ref|ZP_08173221.1| DNA polymerase IV [Prevotella denticola CRIS 18C-A]
gi|325482380|gb|EGC85387.1| DNA polymerase IV [Prevotella denticola CRIS 18C-A]
Length = 359
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 163/314 (51%), Gaps = 27/314 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP L+ VP F +Y S VF +Y SLDEA+LD+TE ++
Sbjct: 56 MPMAQARRRCPHLVVVPCHFDRYKAVSRQIHAVFHEYTDLVEPISLDEAFLDVTE--NKK 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ ++IA E++ + + LT SAG++ N+LLAK+ SD+ KP+G F + DR + F
Sbjct: 114 GMDLAVDIAREIKQKILDRTSLTASAGISYNKLLAKISSDMRKPDGLFTVHPDR--ALGF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLG 178
+ SLP+ K+ G+G T + D+ G+ T E++ Q L VF + + G+
Sbjct: 172 VGSLPVEKLWGVGPKTAKRMHDM-GVFTGEQLRQVSRRHLVQVFG-KMGNIYYDFSRGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL-------LYRKLAEIAEMLSADMQKEGLRGRTL 231
+ RKS+ ERTF ED + LY + E+ E L+ + G GRTL
Sbjct: 230 NRPVVAVHERKSVGCERTF--LEDLHVGSKIIIELYHIVLELVERLA----RSGFEGRTL 283
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNE 287
TLKLK + TR++T Q+ + + +DIL A LLK + PV RL+GL V+
Sbjct: 284 TLKLKWDATTQITRSLTQQRVLRTKDDILPLAKQLLKETSCHDRPV--RLMGLSVSSPLP 341
Query: 288 DKVRAPSDPTQKTL 301
+K + P + L
Sbjct: 342 EKEESSHVPVEGLL 355
>gi|375136727|ref|YP_004997377.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
gi|325124172|gb|ADY83695.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
Length = 351
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 153/286 (53%), Gaps = 11/286 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A TFI LP+
Sbjct: 120 EVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--TFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 178 KKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQLYLYAQ-GIDHRPVQ 234
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLEKKQLNARGVNIKLKLKNFQTL 294
Query: 244 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 295 QHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|325270034|ref|ZP_08136642.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
gi|324987619|gb|EGC19594.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
Length = 364
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 161/311 (51%), Gaps = 25/311 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP L+ VP F +Y S VF +Y SLDEA+LD+TE ++
Sbjct: 56 MPMAQARRRCPHLVVVPCHFDRYKAVSRQIHAVFHEYTDLVEPISLDEAFLDVTE--NKK 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ ++IA E++ + + LT SAGV+ N+LLAK+ SD+ KP+G F + DR + F
Sbjct: 114 GMELAVDIAREIKQKILDRTSLTASAGVSYNKLLAKISSDMRKPDGLFTVHPDR--ALGF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVF---SHSTADFFLSVGL 175
I SLP+ K+ GIG T + D+ G+ T ++ Q L VF H DF
Sbjct: 172 IGSLPVEKLWGIGPKTAKRMHDM-GVFTGGQLRQVSRRHLVQVFGKMGHVYYDF----SR 226
Query: 176 GLGSTNTPQARFRKSISSERTF---SVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRT 230
G+ + RKS+ ERTF E K + LY + E+ E L+ + G GRT
Sbjct: 227 GIDNRRVVAFHERKSVGCERTFLEDIHVESKIIIELYHIVLELVERLA----RSGFEGRT 282
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRVTQFNED 288
LTLKLK + TR++T ++ + + +DIL A LL A +RL+GL V+ +
Sbjct: 283 LTLKLKWDAASQITRSLTQERVLRTKDDILPLAKRLLGETAYHDRPVRLMGLSVSSPVIE 342
Query: 289 KVRAPSDPTQK 299
K AP P +
Sbjct: 343 KADAPGRPVWR 353
>gi|383775145|ref|YP_005454214.1| DNA polymerase IV [Bradyrhizobium sp. S23321]
gi|381363272|dbj|BAL80102.1| DNA polymerase IV [Bradyrhizobium sp. S23321]
Length = 366
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 157/295 (53%), Gaps = 19/295 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE
Sbjct: 69 MPSVTARRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTPVIEPLSLDEAYLDVTE----- 123
Query: 61 GISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +A + +R ++ E GL SAG++ N+ LAK+ SD KPNGQFV+ +
Sbjct: 124 NLQGIPLARDVALRIRETIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGP- 182
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGL 175
F+ +LP+ K GIG T + + G+ T ++ Q + A F S A ++ +
Sbjct: 183 -AFVETLPVGKFHGIGPATSAKM-NALGLFTGLDIRNQSLEFMNANFGKSGA-YYYWISR 239
Query: 176 GLGSTNTPQARFRKSISSERTFSVTED--KALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
G+ R RKSI +E TF D AL+ +L + + + + G RGRT+TL
Sbjct: 240 GVDERPVRANRVRKSIGAETTFQADLDVFDALII-ELRPLVDKVWRHCEATGNRGRTVTL 298
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 286
K+K A FE+ TR+ +L +S +++ + A LL+ E+P+ +RL+G+ ++
Sbjct: 299 KIKFADFEIITRSRSLPAPVSGRDELERLACGLLEVEMPLPKRVRLLGVSLSALQ 353
>gi|381170537|ref|ZP_09879693.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688994|emb|CCG36180.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 359
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 155/293 (52%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQLIRTQIREEIQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|393765264|ref|ZP_10353849.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
gi|392729263|gb|EIZ86543.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
Length = 360
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 159/300 (53%), Gaps = 15/300 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+LCP+L+FV F Y S+ R VF ++ P +LDEAYLD+TE
Sbjct: 62 MPSATARRLCPDLLFVKPRFEVYRAVSEEIRAVFARHTPVIEPVALDEAYLDVTENL--L 119
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + +A+ +R + E GL SAGV+ N+ LAKV SD KP+ FV+ M F
Sbjct: 120 GLPTATAVAKAIRAEILERTGLVASAGVSYNKFLAKVASDYRKPDALFVI-TPAMGP-DF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+++LPI + G+G VTE ++ + GI T ++ L F + A ++ +V GL
Sbjct: 178 VAALPIGRFHGVGPVTEAKMKRL-GIETGADLRAWDPDRLREAFGSAGA-YYHAVARGLD 235
Query: 179 STNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKSI +E TFS ED A +L +LA + + + A +G+R RT+TLKL
Sbjct: 236 MRPVRAHRVRKSIGAETTFS--EDTAAFEILAARLAPLFDKVWAGADAKGMRARTVTLKL 293
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAP 293
K + F TRA +L ++ + + LL P+ S RLIG+ ++ F + + P
Sbjct: 294 KFSDFAQVTRAKSLSVPVADRAALERIGLDLLAGLFPLRRSARLIGIALSGFEQGEKEEP 353
>gi|357032073|ref|ZP_09094013.1| DNA polymerase IV [Gluconobacter morbifer G707]
gi|356414300|gb|EHH67947.1| DNA polymerase IV [Gluconobacter morbifer G707]
Length = 376
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 143/281 (50%), Gaps = 19/281 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+L+FVP F Y S R +F +Y P SLDEAYLD+T+
Sbjct: 75 MPSLKAKRLCPDLLFVPPRFDVYRAVSAQIRDIFARYTPLIQPLSLDEAYLDLTDHLGAY 134
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-----PNDRMA 115
G S IAE +R + E GLT SAGV+ NR LAK+ SD KP+G F++ PN
Sbjct: 135 G-SATLIAERIREDIRMETGLTASAGVSYNRFLAKLASDYRKPDGLFLITPAMGPN---- 189
Query: 116 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 175
F++ LP+ GIG T +R GI T +++ + A F+ +
Sbjct: 190 ---FVADLPVSSFHGIGPATARRMR-TLGIETGKDLRDVSLAVLTRHFGKAALFYHGISR 245
Query: 176 GLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRTLT 232
G+ R RKS+ +E+T+ D +L L +IA L + + L+ RT+T
Sbjct: 246 GIDDRPVVVDRERKSLGTEQTY--LTDLLILSEALEALDQIAAKLWSQSLRRNLQARTVT 303
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV 273
LK+K A F TRA TL + ++S ++ + +L++ PV
Sbjct: 304 LKVKYADFRQITRARTLARPVASEAELREVGQILMRPLFPV 344
>gi|304382732|ref|ZP_07365223.1| DNA-directed DNA polymerase IV [Prevotella marshii DSM 16973]
gi|304336127|gb|EFM02372.1| DNA-directed DNA polymerase IV [Prevotella marshii DSM 16973]
Length = 400
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 151/291 (51%), Gaps = 16/291 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A+ CP+LI VP + Y S+ ++F +Y SLDEA+LDIT ++
Sbjct: 95 MPVKKAKLRCPQLIIVPVRHSLYREISEQVHEIFGRYTDLIEPLSLDEAFLDITH--NKK 152
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI ++IA+E+R S+ EE LT SAG++ N+ LAK+ SD KP+G FV+ DR + F
Sbjct: 153 GIEMAVDIAKEIRQSIREELHLTASAGISYNKFLAKIASDFRKPDGLFVIHPDR--ALDF 210
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I+ LPI G+G T + + + + L VF + A ++ G+
Sbjct: 211 IARLPIHDFWGVGSKTAAVFHKMGVFDGAQLRACSRRHLTEVFGKAGAMYY-EFARGIDH 269
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+S E+TF + + +L +L E L ++K G G TLTLK+K
Sbjct: 270 RPVVTERERKSVSCEQTFEEDIYSNSTVLI-ELYHTMEDLVRRLEKTGFEGHTLTLKIKY 328
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKA-----ELPVSLRLIGLRVT 283
F TR++T K + S DIL A LLK+ E P+ RLIGL V+
Sbjct: 329 GDFSQVTRSMTTGKTLRSKADILPRAKQLLKSISWSVEKPI--RLIGLAVS 377
>gi|395003647|ref|ZP_10387772.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acidovorax sp. CF316]
gi|394318442|gb|EJE54873.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acidovorax sp. CF316]
Length = 422
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 145/284 (51%), Gaps = 11/284 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP I +P DF + +S L + + P +DE Y+D T+V + G
Sbjct: 111 AAKLCPHAIVLPVDFDEVRRFSRLFKSTIAEIAPVMQDRGVDEVYIDFTDVPGGQREGGR 170
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ S+++ GLTCS GVAPNRLLAK+ S+ NKPNG ++ + + I L +
Sbjct: 171 VLARLIQKSIFDVTGLTCSIGVAPNRLLAKMASEFNKPNGISIVHEEDLK--DRIWPLNV 228
Query: 126 RKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
RKI GIG K E + GI T E+ Q L A F S+ + V G +
Sbjct: 229 RKINGIGPKAGEKLA--ALGITTIGELAAQDPQWLIARFGQSSGAWMHRVAWGRDDSPVV 286
Query: 184 QARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
S+S E TF DKA L R ++ E ++AD+Q++G G+T+ +KL+
Sbjct: 287 TESEPVSMSRETTFDRDLHAVRDKAELGRIFTDLCERVAADLQRKGYVGKTIGIKLRYDD 346
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 282
F + TR TL +Y + I + A + LK L LRL+G+RV
Sbjct: 347 FRIATRDQTLDRYTQDAATIRRTAGLCLKRVPLDRKLRLLGVRV 390
>gi|93117315|gb|ABE99575.1| DinB [Neisseria meningitidis]
gi|93117317|gb|ABE99576.1| DinB [Neisseria meningitidis]
Length = 336
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 13/271 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELP 272
+ TR +T + +L+ A +L+ A +P
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVP 324
>gi|93117309|gb|ABE99572.1| DinB [Neisseria meningitidis]
Length = 335
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 13/271 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELP 272
+ TR +T + +L+ A +L+ A +P
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVP 324
>gi|354334968|gb|AER23910.1| DNA-directed DNA polymerase [Variovorax sp. HH01]
Length = 397
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 149/284 (52%), Gaps = 11/284 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF +Y YS +++ + P +DE Y+D T+V + G
Sbjct: 84 AAKLCPQAIILPVDFDEYRRYSRAFKQIILEVAPLMEDRGVDEVYIDFTDVPGGQRDGGR 143
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A L+ ++++ GLTCS GVAPN+L+AK+ S+ NKPNG ++ D + I LP
Sbjct: 144 SLARLLQKAIFDATGLTCSIGVAPNKLIAKMASEFNKPNGISIVYEDDLE--KLIWPLPC 201
Query: 126 RKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
RK+ GIG K E + R FGI T ++ ++ L A F +T + V G
Sbjct: 202 RKVNGIGPKADEKLKR--FGIETVGQLAVRDRDWLIANFGKATGAWMHEVSWGRDDRPVV 259
Query: 184 QARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
S+S E TF D+A L + E ++AD+Q++G G+T+ +KL+
Sbjct: 260 TESEPVSMSRETTFDRDLHAVRDRAELGAIFTRLCEQVAADLQRKGYVGKTIGIKLRYDD 319
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 282
F + TR T++++ ++ I + + LK L LRL+G+RV
Sbjct: 320 FRIATRDQTIERFTDDAKTIRQTGGLCLKRVPLERPLRLLGVRV 363
>gi|390944951|ref|YP_006408712.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
gi|390418379|gb|AFL85957.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
Length = 360
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 160/296 (54%), Gaps = 13/296 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G +A CP LIFV F +Y S R++F +Y SLDEA+LD+TE E
Sbjct: 59 MSGKMAALKCPHLIFVRPRFERYKEISLQIREIFFEYTDLVEPLSLDEAFLDVTENKFEN 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 119
S +A+E+R + + GL SAG++ N+ LAK+ SDINKPNGQ +LP + A F
Sbjct: 119 P-SATLLAKEIRAKIKSQTGLNASAGISYNKFLAKIASDINKPNGQAVILPKEAEA---F 174
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ LPI K GIGKVT ++ FGI+ +++ + L F S F+ ++ G+
Sbjct: 175 LEKLPIEKFFGIGKVTAEKMKK-FGIHQGKDLKEYSLQFLTKKFGKSGLHFY-NIVRGIH 232
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKSIS+E TF + + + L + E L ++K ++GRT+TLK+K
Sbjct: 233 MSEVQPNRERKSISAENTFEKDLPTQVEWEEALKGVFEELMRRIEKTRIKGRTITLKIKY 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN--EDKV 290
F ++TR+ + +Y E I + LL E L ++RL G+ ++ N E+K+
Sbjct: 293 KDFTLQTRSKSFDQY-PDKEKIWETVLELLNQERLTDAVRLFGIGISNLNLLEEKI 347
>gi|167645987|ref|YP_001683650.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167348417|gb|ABZ71152.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 373
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 152/295 (51%), Gaps = 17/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A CP+LIFVP F Y S +F Y SLDEAYLD+T R
Sbjct: 59 MPSTTALAKCPQLIFVPPRFEVYKAVSRQIHAIFADYTDLIEPLSLDEAYLDVT--ANRR 116
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G++ + A E+R + E GLT SAG++ N+ LAK+ SD KPNGQFV+P + F
Sbjct: 117 GLATATDTALEIRARILETTGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGKGEA--F 174
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LPI + G+G VTE ++ + I+T E++ ++ + ++ ++ G
Sbjct: 175 VQTLPIGRFYGVGAVTEAKMKSL-DIHTGEDLHRQSLAFLQQHFGKSGPWYYAIARGEDH 233
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD-----MQKEGLRGRTLTLK 234
R RKS SE TF D+ + + E + AD QK G R RT+T+K
Sbjct: 234 RRVNPDRVRKSSGSETTF----DQDHIAPEPIEAGVLAMADDVWAWCQKTGARARTVTVK 289
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNE 287
+K A F+ TR+ +L I+ E + + L+++ P + +RL+G+ ++ F++
Sbjct: 290 IKWADFQQATRSRSLPSPIADHETLRRTGLDLIRSVYPPRMGIRLVGVTLSNFDQ 344
>gi|93117307|gb|ABE99571.1| DinB [Neisseria meningitidis]
Length = 329
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 13/271 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 57 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 115
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 116 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 173
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 174 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 228
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 229 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 288
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELP 272
+ TR +T + +L+ A +L+ A +P
Sbjct: 289 IITRTLTYSSVLPDCAALLQAAQMLM-ARVP 318
>gi|149177333|ref|ZP_01855938.1| DNA-damage-inducible protein P [Planctomyces maris DSM 8797]
gi|148843858|gb|EDL58216.1| DNA-damage-inducible protein P [Planctomyces maris DSM 8797]
Length = 388
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 156/292 (53%), Gaps = 12/292 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+LCP+ F P + Y S +K+F KY P SLDEA+LD++
Sbjct: 49 MPMKTARQLCPQAHFFPVRMSDYAEVSQSLQKIFRKYTPLVEPLSLDEAFLDVSGSQLLF 108
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G +G EIA ++ V L S GVAPN+ LAK+ SD +KP+G V+ D+ + F+
Sbjct: 109 G-NGREIAASIKQEVRHSLQLIASVGVAPNKFLAKIASDADKPDGLVVVEPDK--IQEFL 165
Query: 121 SSLPIRKIGGIGKV-TEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
LP+ ++ GIGK+ T+ R GI T ++ + + +L +F + ++ GL
Sbjct: 166 DPLPVSRVWGIGKMATQRFNR--LGIQTISQVRVLEPKILTELFGEQGLHLW-NLSQGLD 222
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R KSIS E TFS D +L L ++ E +S ++K LRG+T+ LK++
Sbjct: 223 ERAVIPERQAKSISRETTFSSDVNDLEILRIILMDLVEDVSRRLRKNKLRGKTIQLKIRY 282
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQFN 286
F TR++T+ + + +I + A ++L +L P+S+RLIG+ VT F
Sbjct: 283 DDFSTFTRSITVSQPTDLTREIEQSALLMLDQKLPERPLSIRLIGVGVTGFQ 334
>gi|258546266|ref|ZP_05706500.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
gi|258518488|gb|EEV87347.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
Length = 353
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 144/287 (50%), Gaps = 10/287 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++ CP+LI P F Y S R + SLDEAYLD+++ E G S
Sbjct: 64 AQQRCPQLILAPPRFAVYRAVSLQIRALMLAITDAVEPLSLDEAYLDVSDSPHENG-SAT 122
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IAE L + GLT SAGV+ N++LAK+ SD+NKPNG V+ + A F++SL I
Sbjct: 123 RIAERLSAEILAATGLTASAGVSYNKMLAKIASDLNKPNGIAVITPAQGA--DFVASLAI 180
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+ GIGK T + GI T ++ L + +L H DF+ + G+
Sbjct: 181 ERFHGIGKATAAHM-HALGIQTGADLRRLSRETLRHEFGKHG--DFYYDMARGIDLRPVE 237
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
AR RKSI SE TF+ ED A LY+ L AD+Q+ L+ TLTLKLK + F
Sbjct: 238 AARERKSIGSETTFARDIEDHAALYQALLAQNREAFADVQRRHLQPHTLTLKLKYSDFSQ 297
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 288
TR TL + ED + LL+ P +RL+G+ + ED
Sbjct: 298 TTRRQTLSTPFAREEDAHYWIARLLQEIAPARPVRLVGITYSGLRED 344
>gi|317154691|ref|YP_004122739.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
gi|316944942|gb|ADU63993.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
Length = 392
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 159/287 (55%), Gaps = 14/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+L+ V +Y S+ ++ P AS+DEAYLD T + ER I
Sbjct: 62 ARKLCPDLLLVSGRMGRYKEISNQVMAALHEFSPTVEQASVDEAYLDGTGL--ERLFGPI 119
Query: 66 -EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 123
++A +++T V E GLTCS G AP R LAK+ SD+NKP+G F+L P D V F+ +L
Sbjct: 120 DQVARQIKTRVREVTGLTCSVGAAPVRFLAKIASDVNKPDGMFILRPED---VAGFLRTL 176
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA--VFSHSTADFFLSVGLGLGSTN 181
P+ +I G+G LR + G TC ++L + V + A + G+ ST
Sbjct: 177 PVGRIPGVGAKLAETLRHM-GARTCGDILGRPRSYWEQRVGKYGGALHDRAGGID-PSTV 234
Query: 182 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
TP + KS S+E TF T D+ +L R L +E + +D++ G +GRT+TLK+K A F
Sbjct: 235 TPTSEA-KSCSAENTFHEDTTDREVLNRWLLAQSERVGSDLRGHGYKGRTVTLKVKFADF 293
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN 286
TR+ +L ++ I + A LL + +L ++RLIG+ V+ F+
Sbjct: 294 TQITRSRSLDARTDNTALICETARDLLGQLDLRRAVRLIGVGVSNFS 340
>gi|403412384|emb|CCL99084.1| predicted protein [Fibroporia radiculosa]
Length = 310
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 92/142 (64%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M GFIA+KLCP LI V F +Y S +F +YDPN AAS DE Y++IT C +
Sbjct: 152 MAGFIAKKLCPHLILVGNHFDRYLEMSRRVMDIFRRYDPNMCAASCDEGYINITAYCEDH 211
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ E +++R +V +E LT SAG+APN++LAK+CSD NKPNGQF L +D + F+
Sbjct: 212 QLTAEECVQQMREAVQKETRLTVSAGIAPNKMLAKICSDKNKPNGQFKLESDPATIKEFM 271
Query: 121 SSLPIRKIGGIGKVTEHILRDV 142
L IRK+ G+G+V E +L +
Sbjct: 272 HDLSIRKLPGVGRVNERLLESI 293
>gi|424796310|ref|ZP_18222059.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422795030|gb|EKU23796.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 353
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 159/305 (52%), Gaps = 37/305 (12%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPALRAERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYLDVTA---PK 112
Query: 61 GI--SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVM 117
G + EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+ P+ V
Sbjct: 113 GALSTATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQ---VD 169
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVG 174
F++ LP+ K+ G+GKV + L GI T ++ +H A+ F S G
Sbjct: 170 AFLTPLPVSKVHGVGKVMQAKL-AALGIVTVGDLR----------THGEAELEARFGSFG 218
Query: 175 L-------GLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEG 225
L G+ + +SISSE TF+ ED AL L + +AE ++
Sbjct: 219 LRLYQRARGIDPRPVEANQQVQSISSEDTFA--EDLALDALAPAIRLLAEKTWTATRRTE 276
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRV 282
RT+ LKLKTA F + TR+ T ++ S + + A L + +LP S RL+G+ +
Sbjct: 277 RIARTVVLKLKTAQFRILTRSFTPEQPPDSLQALTDIALALCQRVDLPASTRYRLVGVGL 336
Query: 283 TQFNE 287
F+E
Sbjct: 337 AGFHE 341
>gi|334140370|ref|YP_004533572.1| DNA polymerase IV [Novosphingobium sp. PP1Y]
gi|333938396|emb|CCA91754.1| DNA polymerase IV [Novosphingobium sp. PP1Y]
Length = 374
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 152/299 (50%), Gaps = 15/299 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP LIF F Y S R +F +Y P+ SLDEAYLD+T +
Sbjct: 73 MPSTRAARQCPGLIFRKPRFEVYRAVSQQIRAIFHEYTPHVEPLSLDEAYLDVTADLKGL 132
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G S IAEE+R + E GLT SAGV+ N+ LAK+ SD NKP+G V+ P + A F
Sbjct: 133 G-SATRIAEEIRRRIKSETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRPGEGAA---F 188
Query: 120 ISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
++ LP+R+ G+G + E + R GI T ++ K S A++ G+
Sbjct: 189 VAMLPVRRFHGVGPRGAEKMAR--LGIETGADLRGKDIHFLRQHFGSFAEYLYRAARGVD 246
Query: 179 STNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKS+ ERTF ED A L + I +++ +++ RGRT+TLKL
Sbjct: 247 LRQVRANRPRKSVGGERTF--FEDIARADALRETMDSIIDIVWDRIERAETRGRTITLKL 304
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVRA 292
+ A F TRA +L +++ E+ + LL LP +RL+GL ++ ++ A
Sbjct: 305 RYADFRTITRARSLSHFVTGKEEFGQIGHALLDDLMPLPQPIRLMGLTLSALEREEAVA 363
>gi|212703647|ref|ZP_03311775.1| hypothetical protein DESPIG_01692 [Desulfovibrio piger ATCC 29098]
gi|212672942|gb|EEB33425.1| ImpB/MucB/SamB family protein [Desulfovibrio piger ATCC 29098]
Length = 407
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 156/308 (50%), Gaps = 18/308 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFV + +Y S + P AS+DEAYLD T + ER
Sbjct: 63 MPMATAHRLCPQAIFVRGNRRRYAEISGRIMAALQDFSPLVEPASIDEAYLDATGL--ER 120
Query: 61 GISGIE-IAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVM 117
+E + ++ V E GLTCS G AP + LAK+CSDINKP+G ++L P D V
Sbjct: 121 LFGPVEQLIPAIKARVREVTGGLTCSVGAAPVKFLAKICSDINKPDGIYILRPED---VD 177
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
F+ L +R++ G+G+ L + GI E++ + L + G+
Sbjct: 178 GFLGGLDVRRLPGVGRRMVAEL-EALGIRRVEQLRRYSPELLEQRFGKWGRELHARARGI 236
Query: 178 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
KS S+E TF+ T D+ L L AE + A +++ GLR RT+TLK+K
Sbjct: 237 DPRPVVPEHEAKSESAETTFARDTRDREFLKTMLLGHAERVGASLRRHGLRSRTVTLKIK 296
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSD 295
A F TR+ TL + +S+E I + + LL+AE LP +RLIGL V+ F S
Sbjct: 297 FADFRQITRSRTLSEATNSTETIYETGTALLEAEALPQPVRLIGLGVSGFG-------SA 349
Query: 296 PTQKTLTN 303
PTQ+ L
Sbjct: 350 PTQELLPG 357
>gi|421096936|ref|ZP_15557635.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200901122]
gi|410800181|gb|EKS02242.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200901122]
Length = 362
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 149/270 (55%), Gaps = 9/270 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P+ IFV F Y SD R++F +Y SLDE YLD+T ++
Sbjct: 59 MPCSKAAQLAPQAIFVSPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKK 116
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I + IA+E+R +++ GLT SAGV ++ +AK+ S+ NKPNG VLP+D V+T
Sbjct: 117 NIPFAVTIAKEIRAEIFKRTGLTASAGVGNSKFIAKLASEKNKPNGLVVVLPDD---VIT 173
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LP+ G+GKVT ++++ GI+T +++ K + T ++ + G
Sbjct: 174 FIDPLPVSSFHGVGKVTAQKMKEL-GIHTGKDLRTKNIDELVQYFGKTGIYYYKISRGED 232
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E TF + D+ L ++L E+A + ++K G+TLTLK+K
Sbjct: 233 EREVESCRERKSLGAENTFDQDKIDQEDLLQQLREVAVEVERRLKKRNFAGKTLTLKIKF 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL 267
F ++TR+ TL + I S++++ A+ L
Sbjct: 293 QDFSLKTRSKTLSEPIFSADELYSIAAELF 322
>gi|189912993|ref|YP_001964882.1| DNA polymerase IV [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|189913320|ref|YP_001964549.1| DNA polymerase IV [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|167777669|gb|ABZ95969.1| DNA damage-inducible protein DNA polymerase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167781388|gb|ABZ99685.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 358
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 157/296 (53%), Gaps = 15/296 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ IF P F Y S R++F +Y SLDEAYLD+T ++
Sbjct: 62 AYKLCPDAIFTPPRFEVYKSVSKEIRRIFLEYTDLVEPLSLDEAYLDVTTNKPNLPLAST 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTFISSLP 124
IA+E+R ++E GLTCSAGVA N+ LAK+ S+ NKPNG + VLP + ++F+ LP
Sbjct: 122 -IAKEIRKKIWEGTGLTCSAGVATNKFLAKMASEKNKPNGLYVVLPGEE---LSFLDELP 177
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+ + GIGK T + + G + +++ L S L F + F+ + G+
Sbjct: 178 LYQFFGIGKKTYEKFQHL-GFSKGKDLRLADESFLLKEFGKMGSVFY-RMARGIDDREVI 235
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R KSI E TF+ +ED + L +A+ L M K+ +G+TLTLK+K F V
Sbjct: 236 PFRDPKSIGVETTFTHDSEDFSYFLLTLETLAKELEGRMLKKNKKGKTLTLKVKFEDFTV 295
Query: 243 RTRAVTLQKYISSSEDILKHASVLL------KAELPVSLRLIGLRVTQFNEDKVRA 292
+ +++T ++++ + +S LL + P +RL+GL VT F E +++
Sbjct: 296 KQKSITSDSVFFLADNLFQQSSNLLANVWKDNFDPPKKIRLLGLSVTNFYEKEIKG 351
>gi|227539640|ref|ZP_03969689.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240553|gb|EEI90568.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 350
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 164/305 (53%), Gaps = 16/305 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A +LCP+LIF F Y S R++F +Y SLDEAYLD+TE ++GI S
Sbjct: 56 ALQLCPDLIFTRPRFDIYKEVSQQIRQIFLRYTDLIEPLSLDEAYLDVTE--DKQGIGSA 113
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
I+IA +++ + EE LT SAGV+ N+ +AK+ SDINKP+G F+ P+ V+ F+ L
Sbjct: 114 IDIARQIKQEIQEELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSK---VVAFMEHL 170
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
PI K G+GKVT ++ + GI +M Q T +FF ++ G+ +
Sbjct: 171 PIEKFFGVGKVTASKMKKL-GIYRGADMKQWTQEALTRHFGKTGEFFYNIVRGIDNRPVQ 229
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R KSIS E TF+ D +L L E++ L + + L G+T+TLK+K + F
Sbjct: 230 PNRQTKSISVEDTFAQDIADIQVLEDILKELSVRLVKRLNAKELAGKTVTLKVKFSDFSQ 289
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP-VSLRLIGLRVTQF-NEDKVRAPSDPTQK 299
TR++T ++ E + + AS LL K L + +RL+G+ V+ F ED P +
Sbjct: 290 ATRSMTALDVVTGEEVLYQIASELLNKVSLTEMKVRLLGVGVSNFTGED----PDRQINR 345
Query: 300 TLTNF 304
LT F
Sbjct: 346 QLTLF 350
>gi|404406098|ref|ZP_10997682.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes sp. JC136]
Length = 353
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 139/265 (52%), Gaps = 11/265 (4%)
Query: 5 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 64
+AR+LCP LIFVP F Y S R +F Y SLDEA+LD++ V S
Sbjct: 61 LARRLCPALIFVPARFDVYKAVSQQIRDIFHDYTDLVEPLSLDEAFLDVSHVR-----SA 115
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
+A E++ + E GLT SAG++ N++LAK+ SD KP+G FV+P DR + F++ LP
Sbjct: 116 TLVAREIKARIRAETGLTASAGISVNKMLAKIASDYRKPDGLFVIPPDR--IDAFVAELP 173
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
+ + GIG+VT + GI T ++ Q L L F + ++ G+
Sbjct: 174 VERFFGIGEVTAEKMH-ALGIRTGADLRQWEELELVRHFGKAGRSYY-GYARGIDPRPVV 231
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R RKS+ +E TF T D+ +L +L ++ E + + + RGRT+ LKLK F
Sbjct: 232 PNRIRKSLGAETTFEADTADREVLLGELEQVCEEVWRRLVRHKFRGRTVVLKLKFDDFRQ 291
Query: 243 RTRAVTLQKYISSSEDILKHASVLL 267
TR+ TL + + S + + A LL
Sbjct: 292 ITRSRTLSRPVDSHDGLCLVAGELL 316
>gi|398825840|ref|ZP_10584115.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. YR681]
gi|398222485|gb|EJN08859.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. YR681]
Length = 366
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 158/295 (53%), Gaps = 17/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R++F ++ P SLDEAYLD+TE
Sbjct: 69 MPSVTAKRQCPDLIFVRPRFEVYKAISRQIREIFAEHTPVIEPLSLDEAYLDVTE----- 123
Query: 61 GISGIEIAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +A + +R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ +
Sbjct: 124 NLQGIPLARDVALRIRDKIKAETGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGP- 182
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGL 175
F+ +LP+ K GIG T + + G+ T ++ Q + A F S A ++ +
Sbjct: 183 -AFVETLPVGKFHGIGPATAAKM-NALGLFTGLDIRNQTLEFMNANFGKSGA-YYYWISR 239
Query: 176 GLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
G+ R RKSI +E TFS D L +L + + + + G RGRT+TLK
Sbjct: 240 GVDERPVRANRIRKSIGAETTFSTDLDTFDALAAELRPLVDKVWRHCETSGNRGRTVTLK 299
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
+K A FE+ TR+ ++ ++ +++ + A LL+ E+P+ S+RL+G+ ++ +
Sbjct: 300 VKFADFEIVTRSRSVPAPVAGRDELERLACGLLEVEMPLPKSVRLLGVSLSSLQD 354
>gi|381401525|ref|ZP_09926424.1| DNA polymerase IV [Kingella kingae PYKK081]
gi|380833500|gb|EIC13369.1| DNA polymerase IV [Kingella kingae PYKK081]
Length = 338
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 154/291 (52%), Gaps = 15/291 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+ +FVP F Y S +F +Y SLDEAYLD+T+ ++
Sbjct: 48 MPVATAKRLCPQAVFVPPHFDLYRQMSQQIHMIFQRYTDLIEPISLDEAYLDVTQNKQQL 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
+ ++A+++R + + GLT SAG+APN+ LAK+ SD KPNGQFV+ P++ + F
Sbjct: 108 PYAS-QVAKQIRAEILAQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIQPHE---IEYF 163
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF-FLSVGLGLG 178
+ LP+ K+ G+GK T ++ G T ++ Q A H F + L G
Sbjct: 164 LRDLPVGKVWGVGKKTLLKMQQ-HGWQTIGDLRQVSR---AELVHWFGKFGYRLYDLARG 219
Query: 179 STNTP-QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
P QA R R IS+E T S +K + L +++ L MQ++ ++ TLTLKLK
Sbjct: 220 VDERPVQAERERLQISTEMTLSDNLNKQAISMYLDNLSKDLWQQMQRKKMQAYTLTLKLK 279
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQFN 286
+ F+V TR+ T + E L A++ L A +P RLIGL V+
Sbjct: 280 STEFQVFTRSQTYSAAL--PEQGLLQAALQLIARMPDGEFRLIGLGVSHLQ 328
>gi|285019488|ref|YP_003377199.1| DNA polymerase iv protein [Xanthomonas albilineans GPE PC73]
gi|283474706|emb|CBA17205.1| probable dna polymerase iv protein [Xanthomonas albilineans GPE
PC73]
Length = 353
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 158/302 (52%), Gaps = 31/302 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYLD+T V +
Sbjct: 56 MPALRAERLCPDAIFVPPDFARYKAVSRQVRAIFQRHTDLIEPLSLDEAYLDVT-VPKGG 114
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQ V+ R V F+
Sbjct: 115 PAAATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQCVIHPHR--VEAFL 172
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGL-- 175
+ LP+ K+ G+GKV + L GI T ++ C S A+ F S GL
Sbjct: 173 TPLPVNKVPGVGKVMQSKL-AALGIVTVGDLRD-----C-----SEAELEARFGSFGLRL 221
Query: 176 -----GLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRG 228
G+ + +SISSE TF+ ED AL L + +AE ++
Sbjct: 222 YQRARGIDERPVESDQPVQSISSEDTFA--EDLALEALEPAIRRLAEKTWDATRRTDRVA 279
Query: 229 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQF 285
RT+ LKLKTA F + TR+ T ++ S + ++ A L + +LP S RL+G+ ++ F
Sbjct: 280 RTVVLKLKTAQFRILTRSFTPERPPESLQTLIDIALALRQRVDLPASTRYRLVGVGLSGF 339
Query: 286 NE 287
+E
Sbjct: 340 HE 341
>gi|71756021|ref|XP_828925.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834311|gb|EAN79813.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 572
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 24/305 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 59
MPGF+A K+CP L+ +P D Y S+ R++ +YDPN++ LDE L+++ + R
Sbjct: 184 MPGFLALKICPNLLILPPDDDSYNEESNTVRRIVAEYDPNYIVVGLDELALEVSAYIERF 243
Query: 60 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 117
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 244 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTREDVM 303
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
T++ L +R + G+GKVTE +L+ GI T ++ + LC + ++ F L +G+
Sbjct: 304 TYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYILHNNLFRFLLGASIGI 362
Query: 178 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 225
+ NT RK+ISSER+ + K + + + +M+K
Sbjct: 363 MQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSE 422
Query: 226 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR-----LIGL 280
+ R ++L ++ AS+ + +L ++ S + + L+ LP + + L+G+
Sbjct: 423 IMCRRISLTIRWASYRYQQYTKSLIQHSDDSATLRRAVDELM---LPHAAKYSEMCLLGV 479
Query: 281 RVTQF 285
R++
Sbjct: 480 RLSDL 484
>gi|94497839|ref|ZP_01304405.1| DNA-directed DNA polymerase [Sphingomonas sp. SKA58]
gi|94422728|gb|EAT07763.1| DNA-directed DNA polymerase [Sphingomonas sp. SKA58]
Length = 360
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 156/293 (53%), Gaps = 11/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+LCP+L+FV F Y S R++F ++ SLDEAYLD+T +
Sbjct: 61 MPGARARRLCPDLLFVKPRFEVYRAVSVQIREIFARFTDMIQPLSLDEAYLDVT--VNKP 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
GI S +A+E+R + E GLT SAGV+ N+L+AK+ SD NKP+G V+ P + A
Sbjct: 119 GIASATRVAQEIRRMIRAETGLTASAGVSYNKLIAKLASDQNKPDGICVVRPAEGAA--- 175
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI+++P+R+I G+G VT ++ GI T ++ + S ADF+ G
Sbjct: 176 FIAAMPVRRIHGVGPVTARRMQ-ALGIETGADLRARDLPFLQAHFGSAADFYYRAARGED 234
Query: 179 STNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ + RKS+S E T F D+ L +L I+ L ++K GRT+ LK+K
Sbjct: 235 DRPVRERQSRKSVSVEDTFFGDLTDRDALVTELDRISASLWTRIEKAQAWGRTVVLKVKF 294
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHA--SVLLKAELPVSLRLIGLRVTQFNED 288
A F + TR+ + + S+E + + +L + LP+ RL+GL V D
Sbjct: 295 ADFRIITRSRSFASPVRSAEQLAQAGRELLLAQLPLPLGARLLGLGVHNLEGD 347
>gi|239905076|ref|YP_002951815.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
gi|239794940|dbj|BAH73929.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
Length = 394
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 151/289 (52%), Gaps = 6/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP +F+P + +Y+ S + + ++ P AS+DEAY+DIT
Sbjct: 55 MPVSEAKRRCPHGVFLPGNRRRYSEVSRIVMETLGRFSPLVEPASIDEAYVDITGSQTLF 114
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G +A ++ + E GL CS GVAP + +AK+ SD +KP+G ++ + + F+
Sbjct: 115 GPPET-MARAMKADIREATGLPCSVGVAPVKFIAKIASDYDKPDGLTIVTPE--TALDFL 171
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+ KI G+GK E L + GI ++ + A GS
Sbjct: 172 GPLPVSKIPGVGKRAEESLARL-GIRVVADIRRHEPEFLARHCGKWGLDLYDKAHARGSA 230
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KS+S+E TF T D+ +L L + AE + ++++E LRGRT+T+KLK +
Sbjct: 231 VVCTDREAKSVSAENTFEADTADRDILAAWLLKQAERVGRELRQESLRGRTVTIKLKFNT 290
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 287
F+ TR+ TL + +S I + A LL AE LP LRLIG+ V+QF E
Sbjct: 291 FKQITRSRTLAEPTASDSAIFETARALLDAEPLPHPLRLIGVGVSQFGE 339
>gi|296446214|ref|ZP_06888161.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
gi|296256251|gb|EFH03331.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
Length = 357
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 150/293 (51%), Gaps = 17/293 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S R +F Y P SLDEAYLD+TE R+
Sbjct: 59 MPSVTAQRRCPELIFVPPRFDVYREVSRGLRAIFLDYTPLVEPLSLDEAYLDVTE-NRKA 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAEE+R + EE GLT SAGV+ N+ LAK+ SD KP+G FV+ +M +F+
Sbjct: 118 MASATRIAEEIRARIKEETGLTASAGVSYNKFLAKLASDHRKPDGLFVV-TPQMG-PSFV 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + + G+G T + + GI T ++ Q L F S A F+ + G+
Sbjct: 176 ADLAVGRFHGVGPATTKKM-NALGIETGRDLRAQSLEFLQRNFGKSGA-FYYGIARGVDE 233
Query: 180 TNTPQARFRKSISSERTFSV-----TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
R RKSI +E TF+ E +A LA I + + Q+ GRT+T+K
Sbjct: 234 RPVRPDRIRKSIGAEVTFARDLHAHEEARA----ALAPIVARVWSHCQRAATSGRTVTVK 289
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQF 285
+K A F TR TL ++ + ++ + A L+ P +RL+G+ ++
Sbjct: 290 VKYADFRQITRRSTLAAPVAGAAELERSALALMHPLFPSPAGVRLLGVTLSSL 342
>gi|375144729|ref|YP_005007170.1| DNA polymerase IV [Niastella koreensis GR20-10]
gi|361058775|gb|AEV97766.1| DNA polymerase IV [Niastella koreensis GR20-10]
Length = 358
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 159/289 (55%), Gaps = 8/289 (2%)
Query: 1 MPGFIARKLCPELIFV-PTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 59
MP A +LCPEL+FV P F Y S R++F +Y SLDEAYLD+TE ++
Sbjct: 59 MPSKRAVQLCPELVFVAPPRFAVYKAVSRQVREIFHRYTDLIEPLSLDEAYLDVTEDKQQ 118
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G S I IA++++ ++ +E LT SAGV+ N+ +AK+ SD+NKP+G +P D+ V F
Sbjct: 119 IG-SAIGIAKQIKAAIRDELQLTASAGVSINKFVAKIASDMNKPDGLTFIPPDK--VEAF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ SLP+ K G+GKVT + + + T ++ + + F+ + G+
Sbjct: 176 MESLPVNKFHGVGKVTAEKM-NTLNLFTGADLKKLTEVELVRLFGKPGSFYYKIVRGIDD 234
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSIS+E TF D + + +L +A +++ +Q+ L+G+T+TLK++ +
Sbjct: 235 RPVEPNRETKSISAEDTFLNDLDNPVEMKEQLDRLAAVVTNRLQQYELKGKTITLKIRYS 294
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELP-VSLRLIGLRVTQF 285
F+ TR+ TL + E I +LLK ++ +RL+G+ V+ F
Sbjct: 295 DFKQLTRSQTLPAAVCDQETIAATVLQLLLKTDIQEAKIRLLGVGVSNF 343
>gi|291514181|emb|CBK63391.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes shahii WAL 8301]
Length = 356
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 152/282 (53%), Gaps = 13/282 (4%)
Query: 5 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 64
+A++LCPELIFVP F Y S R +F +Y SLDEA+LD++ V S
Sbjct: 62 LAKRLCPELIFVPARFDVYKAVSRQIRAIFGEYTELVEPLSLDEAFLDVSHVR-----SA 116
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
+A E++ + E GLT SAG++ N++LAK+ SD KP+G F +P +R + F++ LP
Sbjct: 117 TLVAREIKAHILAETGLTASAGISVNKMLAKIASDYRKPDGLFTIPPER--IEEFVAGLP 174
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+ + GIG+VT + + GI T ++ L + L F + ++ G+
Sbjct: 175 VERFFGIGEVTAEKMHRL-GIRTGADLRLWNEAALVQQFGKAGHSYY-GYARGIDEREVT 232
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R RKS+ +E TF+ T+D+ L +L+ + E + + + RG+T+ LKLK +F
Sbjct: 233 PNRVRKSLGAETTFAEDTDDRERLRLELSAVREEVWNRVMRHEFRGKTVVLKLKFDNFRQ 292
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 282
TR+ TL + S+E + + + LL A +RLIGL V
Sbjct: 293 ITRSKTLFTPVDSAETLRRVSEELLAAADFHGRKIRLIGLTV 334
>gi|399887391|ref|ZP_10773268.1| DNA polymerase IV [Clostridium arbusti SL206]
Length = 347
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 159/293 (54%), Gaps = 11/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++A+ CP IF+P +Y S+ +F + P S+DEAYLD+T V ++
Sbjct: 57 MPIYMAKAKCPNGIFLPVRHERYREISNKVFNIFNEITPLIEPLSIDEAYLDLTHVNKD- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ IA ++ + +E GL S G++ N+ LAK+ SD NKPNG V+ + + F
Sbjct: 116 ---SLYIASFIKNRIKKETGLNISIGLSYNKFLAKLASDWNKPNGLKVIKKSDVPEILF- 171
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
L I K+ G+GK + L D+ GI T EE+ + + L +F + + + G+ +
Sbjct: 172 -PLSIDKVHGLGKKSVKKLNDI-GIFTVEELYKLPVNFLIDLFGKFGPEIYDRIR-GIDN 228
Query: 180 TNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKSI E T + T+DK + + A ++ M+ + L G+ +T+K+KT+
Sbjct: 229 REVKILRERKSIGKETTLINDTDDKEDIKPYIKSFASSIANIMESKNLSGKNITIKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKV 290
SF T++ TL YI+S EDI K A S+L K +L +RLIGL ++ F E ++
Sbjct: 289 SFINHTKSKTLTHYINSEEDIYKEACSILEKLKLEEKIRLIGLSISSFKEKRI 341
>gi|90418642|ref|ZP_01226553.1| DNA polymerase IV [Aurantimonas manganoxydans SI85-9A1]
gi|90336722|gb|EAS50427.1| DNA polymerase IV [Aurantimonas manganoxydans SI85-9A1]
Length = 399
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 159/310 (51%), Gaps = 20/310 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE +
Sbjct: 99 MPSVTARRRCPDLIFVKPRFEVYKAISAEIRAIFAEHTPIIEPLSLDEAYLDVTENLHDI 158
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +IAE +R + E GLT SAGV+ N+ LAK+ SD KP+G FV+ M F+
Sbjct: 159 P-SATQIAEMIRQRIREVTGLTASAGVSYNKFLAKLASDYRKPDGIFVV-TPAMGP-GFV 215
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPI + G+G T ++ FGI+T ++ K T ++ S+ G+
Sbjct: 216 EDLPIGRFHGVGPATAAKMQR-FGIHTGRDLHDKSLPFLQEHFGKTGPYYYSISRGIDER 274
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK-------EGLRGRTLTL 233
R RKS+ +E TF A L+ E+ E L + K +RGRT+TL
Sbjct: 275 PVRANRIRKSVGAENTFG-----ADLF-AFDEMREALQPILDKVWRYCETSTIRGRTVTL 328
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVR 291
K+K A F+ TRA + + ++S +D+ + A LL A +P +RL+G+ ++ + +
Sbjct: 329 KVKFADFQQITRARSAVQPVASRDDLERIALSLLGAAMPFDKGVRLLGVALSSLIREGM- 387
Query: 292 APSDPTQKTL 301
+ PTQ +L
Sbjct: 388 SDETPTQFSL 397
>gi|189044612|sp|Q1JF59.1|DPO4_STRPD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94544652|gb|ABF34700.1| DNA polymerase IV [Streptococcus pyogenes MGAS10270]
Length = 364
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|28210190|ref|NP_781134.1| DNA polymerase IV [Clostridium tetani E88]
gi|28202626|gb|AAO35071.1| putative DNA polymerase IV [Clostridium tetani E88]
Length = 352
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 156/295 (52%), Gaps = 15/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP F+AR+ CP I+VP+ +Y S K+F + P S+DEAYLDIT RE
Sbjct: 57 MPVFMAREKCPNGIYVPSRHDRYREVSKNIFKIFYEITPIVEPVSIDEAYLDITNCGRE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+EI + ++ +++ GLT S G++ N+ LAK+ SD NKPNG ++ D + +
Sbjct: 116 ---PLEIVKYIKKEIWKREGLTASMGISYNKFLAKLASDWNKPNGVKIIKKD--MIPNIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG---LGL 177
LPI K+ G+GK + + ++ GI E+M + L +F F L + G
Sbjct: 171 LPLPINKVHGMGKKSVEKMNNI-GIFKIEDMYK---LPLDLFIEYFGKFGLEIYERIRGF 226
Query: 178 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R RKSI +E T T+D + + L ++ +S ++K + G+T+T+K+K
Sbjct: 227 DNREVQVGRERKSIGNETTLRKDTKDTEEIKKYLYTFSKSISEGLKKNHMWGKTVTVKIK 286
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKV 290
FE T++ TL+ YI+ E I A +L + + LRLIGL ++ +E K+
Sbjct: 287 NYKFETTTKSKTLKDYINEEEKIYIEACKILDSINIKEPLRLIGLTLSNLSESKI 341
>gi|359797341|ref|ZP_09299927.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
gi|359364842|gb|EHK66553.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
Length = 365
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 133/250 (53%), Gaps = 8/250 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A +LCP I+VP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 65 MSAIKAERLCPHAIYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYLDVT--VNKC 122
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
G+ S E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+G FV+ PN V+
Sbjct: 123 GLPSATEVAQVIRQQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPNK---VLA 179
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ LP+RK+ G+GKVT+ L + GI T ++ + + + G+
Sbjct: 180 FLEPLPVRKVPGVGKVTQARL-EQLGIQTVGDLATHSAQELEHYFGRYGRRLYELARGID 238
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ + +S+E TFS + + +AE + K+G GRT+ LKLKT
Sbjct: 239 EREVQPDQPLQQVSAETTFSRDVRLDAVGEAIDRMAEKVWDQALKKGALGRTVVLKLKTD 298
Query: 239 SFEVRTRAVT 248
F + TR+ T
Sbjct: 299 RFRILTRSQT 308
>gi|345882594|ref|ZP_08834057.1| DNA polymerase IV [Prevotella sp. C561]
gi|345044625|gb|EGW48656.1| DNA polymerase IV [Prevotella sp. C561]
Length = 358
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 162/294 (55%), Gaps = 33/294 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A++ CP+LI VPT F KY S VF +Y SLDEA+LD+T+ ++GI
Sbjct: 53 AKRRCPQLIVVPTHFEKYKEVSQQIHAVFHEYTDLVEPISLDEAFLDVTD--NKKGIELA 110
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
++IA+E++ + E LT SAG++ N+LLAK+ SD+ KPNG F + DR + FI SLP
Sbjct: 111 VDIAKEIKQKILERTSLTASAGISFNKLLAKIASDMRKPNGIFTVHPDR--ALDFIGSLP 168
Query: 125 IRKIGGIGKVTEHILRDVFGINT--------CEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
+ K+ G+G T + + ++ G+ T CE ++Q + V+ DF G
Sbjct: 169 VEKLWGVGPKTANRMHEM-GVFTGAQLRRISCEHLVQVFGKMGRVYY----DF----SRG 219
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEGLRGRTLTL 233
+ + A RKS+ ERTF ED + + + E+ + L ++++ RGRTLTL
Sbjct: 220 IDNRPVVVAYERKSVGCERTF--LEDLHIDTKIIIELYHIVLELVERIERKDFRGRTLTL 277
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 283
KLK + TR++T +K + + +DIL A LLK + P+ RL+GL V+
Sbjct: 278 KLKWDATTQITRSLTQEKVLRTKDDILPLAKRLLKDTEYHDRPI--RLMGLSVS 329
>gi|260220684|emb|CBA28482.1| hypothetical protein Csp_A07430 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 412
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 9/283 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF +Y +YS + + P +DE Y+D T V + G
Sbjct: 92 AAKLCPQAILLPVDFAQYRHYSQRFKAIITDIAPVMENRGVDEVYIDFTHVPGGQRQGGR 151
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ +++++ GLTCS GVAPN+LLAK+ S+ NKPNG ++ + M I L
Sbjct: 152 VLARLIQKAIFDDTGLTCSVGVAPNKLLAKMASEFNKPNGIAIVHESDLEPM--IWPLAC 209
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
RKI GIG + L+ GI T ++ K L F + + G
Sbjct: 210 RKINGIGPKADEKLKK-HGIETIGQLAAKELQWLMDTFGPRAGAWLHAAAHGQDDRPVET 268
Query: 185 ARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
S+S E TF DKA L + E ++AD+Q++G RG+T+ +KL+ F
Sbjct: 269 ESEPVSMSRETTFDRDLHAVRDKAELGAIFTRLCEQVAADLQRKGYRGKTVGIKLRFDDF 328
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 282
+ TR +T+ + + ++DI + A + LK A L LRL+G+RV
Sbjct: 329 KSVTRDITVDYFTADAKDIRRIAGLCLKRAPLQKRLRLLGVRV 371
>gi|149185736|ref|ZP_01864052.1| DNA polymerase IV [Erythrobacter sp. SD-21]
gi|148830956|gb|EDL49391.1| DNA polymerase IV [Erythrobacter sp. SD-21]
Length = 370
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 153/294 (52%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LIFV + F Y S R +F + SLDEAYLD+TE +
Sbjct: 70 MPSVTAKRLCPDLIFVKSRFDAYREVSQQIRAIFRHHTDLVEPLSLDEAYLDVTE--DKL 127
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S IAE +R + + LT SAGV+ N+ LAK+ SD NKP+G V+ A F
Sbjct: 128 GIGSATRIAELIRQEIRAKTRLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGA--DF 185
Query: 120 ISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ SLP+R+ G+G K E + D GI T E+ K S AD+ G+
Sbjct: 186 VQSLPVRRFHGVGPKGAEKM--DRLGIQTGAELAAKDIEWLRAHFGSFADYLYRAARGID 243
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+R RKS+ ERTFS + L L +I +++ +++ +GRT+TLK+K
Sbjct: 244 LRPVRSSRIRKSVGGERTFSRDLSSGSELRETLEDIIDIVWGYIERAEAKGRTVTLKMKY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNEDK 289
F++ +RA T+ + I+ + LL+ LP+ +RL+GL +++ K
Sbjct: 304 IDFQIFSRAKTVDQPITDRAQFEALSRQLLEEVLPLPMPIRLMGLTLSKLEGGK 357
>gi|359398362|ref|ZP_09191383.1| DNA polymerase IV [Novosphingobium pentaromativorans US6-1]
gi|357600274|gb|EHJ61972.1| DNA polymerase IV [Novosphingobium pentaromativorans US6-1]
Length = 401
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 152/299 (50%), Gaps = 15/299 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP LIF F Y S R +F +Y P+ SLDEAYLD+T +
Sbjct: 100 MPSARAARQCPGLIFRKPRFEVYREVSQQIRAIFHEYTPHVEPLSLDEAYLDVTADLKGI 159
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G S IAEE+R + E GLT SAGV+ N+ LAK+ SD NKP+G V+ P + A F
Sbjct: 160 G-SATRIAEEIRRRIRTETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRPGEGAA---F 215
Query: 120 ISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
++ LP+R+ G+G + E + R GI T ++ + S A++ G+
Sbjct: 216 VAGLPVRRFHGVGPRGAEKMAR--LGIETGADLRDRDIHFLRQHFGSFAEYLYRAARGVD 273
Query: 179 STNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKS+ ERTF ED A L + I +++ +++ RGRT+TLKL
Sbjct: 274 LRQVRANRPRKSVGGERTF--FEDIARADALRETMDSIIDIVWDRIERAEARGRTVTLKL 331
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVRA 292
+ A F TRA +L +++ E+ + LL LP +RL+GL ++ ++ A
Sbjct: 332 RYADFRTITRARSLPHFVTGKEEFGQIGHALLDDLMPLPQPIRLMGLTLSALEREEAVA 390
>gi|374578695|ref|ZP_09651791.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM471]
gi|374427016|gb|EHR06549.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM471]
Length = 367
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 163/311 (52%), Gaps = 24/311 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R +F ++ P SLDEAYLD+T+
Sbjct: 69 MPSVTAKRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTPIIEPLSLDEAYLDVTQ----- 123
Query: 61 GISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +IA ++R + E GL SAGV+ N+ LAK+ SD KPNGQFV+ +
Sbjct: 124 NLQGIPLARDIALKIRERIKAETGLNASAGVSYNKFLAKLASDHRKPNGQFVISPEMGP- 182
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +LP+ K GIG T + + + Q + A F S A ++ + G
Sbjct: 183 -AFVETLPVGKFHGIGPATGAKMNALGMFTGLDIRRQTLEFMNANFGKSGA-YYYWISRG 240
Query: 177 LGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ R RKSI +E TFS +T+ L+ +L + + + + G RGRT+TLK
Sbjct: 241 VDDRPVRANRVRKSIGAETTFSNDLTQFDTLVA-ELKPLIDKVWRHCEATGSRGRTVTLK 299
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT--QFNEDKV 290
+K A FE+ TR+ + ++ D+ + A LL+ E+P+ S+RL+G+ ++ Q +D
Sbjct: 300 IKFADFEIITRSRSAVSPVAGRADLERLACGLLEVEMPLPKSVRLLGVSLSSLQAGDD-- 357
Query: 291 RAPSDPTQKTL 301
++P Q TL
Sbjct: 358 ---AEPPQLTL 365
>gi|139473158|ref|YP_001127873.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
gi|189044614|sp|A2RCQ1.1|DPO4_STRPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|134271404|emb|CAM29624.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
Length = 364
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|71904218|ref|YP_281021.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
gi|123639299|sp|Q48RJ4.1|DPO4_STRPM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71803313|gb|AAX72666.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
Length = 364
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 166/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGITMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|418297525|ref|ZP_12909366.1| DNA polymerase IV [Agrobacterium tumefaciens CCNWGS0286]
gi|355537711|gb|EHH06966.1| DNA polymerase IV [Agrobacterium tumefaciens CCNWGS0286]
Length = 365
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 151/293 (51%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+LIFV F Y S R++F +Y P SLDEAYLD+TE ++
Sbjct: 64 MPSVTAARKCPDLIFVKPRFEVYRAVSQQIREIFAEYTPIIEPLSLDEAYLDVTENLKDM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ +IA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 124 PIA-TDIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L ++K G+G T ++ + GI T ++ K + +F + G+
Sbjct: 180 VEQLAVKKFHGVGPATAEKMQRL-GIETGTDLKAKSLQFLVEHFGKSGPYFYGIARGIDD 238
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF+ D L +L +AE + A + +G G+T+T+K+K +
Sbjct: 239 RRVRPDRVRKSVGAEDTFTADISDLDLATSELRPLAEKVWAYCEAKGFSGKTVTVKIKYS 298
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDK 289
F TR+ T S +DI A+ LL P +RL+G+ ++ +K
Sbjct: 299 DFTQATRSRTSALPYSGIKDIFDAANALLAGVYPFKRPVRLLGVTLSSLTNEK 351
>gi|358012029|ref|ZP_09143839.1| DNA polymerase IV [Acinetobacter sp. P8-3-8]
Length = 351
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 162/304 (53%), Gaps = 22/304 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S ++F Y SLDEA+LD+TE + S
Sbjct: 61 ARKLCPQVVVIEPNFEKYREVSQQIHQIFQHYTSTIEPLSLDEAFLDVTENLQNIP-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+AE +R +++ GLT SAGVAPN+ LAK+ SD NKPNG ++ + V FI LP+
Sbjct: 120 EVAECIRADIFKTTGLTASAGVAPNKFLAKIASDWNKPNGICIIKPSQ--VQHFIHDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
+KI G+GKVT+ L+ + + T ++ Q ++L F FL G+
Sbjct: 178 KKIPGVGKVTQEKLKSL-NLETLGDLQQVDENVLIHHFGKYGKQLFL-YAQGIDERPVQA 235
Query: 185 ARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
R R+ IS E TF S+T+ + E + +QK+ ++ R + +KLK +F
Sbjct: 236 ERQRQQISKEITFDDDLSITQCSPY----WDNLIERVWLSLQKKQMQARGVNVKLKLKNF 291
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK-AELP--VSLRLIGLRVTQFNEDKVRAPSDPT 297
+V + + + ++S +D+++ +LL+ ++P + RLIG+ + Q E + D T
Sbjct: 292 QVLQHSKSFKLALNSQQDMVQVIKLLLQEMQIPEHLQFRLIGVGLYQLTEQQ-----DET 346
Query: 298 QKTL 301
Q +L
Sbjct: 347 QLSL 350
>gi|323138008|ref|ZP_08073082.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242]
gi|322396727|gb|EFX99254.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242]
Length = 382
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 154/291 (52%), Gaps = 11/291 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP+LIFV F Y S R++F +Y SLDEAYLD+T +
Sbjct: 84 MPSVTARRKCPDLIFVKPRFDVYKAVSTQIREIFAEYTAIIEPLSLDEAYLDVT--TNLK 141
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI + EIA+E+R ++ + GLT SAGV+ N+ LAK+ SD KP+G FV+ RM F
Sbjct: 142 GIETATEIAQEIRAAIRSKIGLTASAGVSYNKFLAKLASDHRKPDGMFVI-TPRMGP-AF 199
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ + + K G+G T+ + + GI+T ++ + L F + F+ + G+
Sbjct: 200 VEGMAVEKFHGVGPATKAKM-NRLGIHTGRDLRSQALPFLIENFGKAGGHFYW-ISRGVD 257
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E+TF++ D A + L + + + + G+RGRT+TLK+K
Sbjct: 258 HRPVRADRIRKSVGAEQTFALDMTDLAAMREALEPVIDKVWRHCETTGVRGRTVTLKVKF 317
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ F++ TR+ TL I + ++ ++ L P +RL+G+ ++
Sbjct: 318 SDFDLITRSRTLPHAIDTRAELARNVFETLTGAFPFRKPVRLLGVSISSLG 368
>gi|19746777|ref|NP_607913.1| DNA polymerase IV [Streptococcus pyogenes MGAS8232]
gi|24211640|sp|Q8NZI1.1|DPO4_STRP8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19749010|gb|AAL98412.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS8232]
Length = 364
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|365899200|ref|ZP_09437117.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3843]
gi|365420001|emb|CCE09659.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3843]
Length = 367
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 158/293 (53%), Gaps = 11/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R +F ++ SLDEAYLD+TE +
Sbjct: 70 MPSVTAKRKCPDLIFVRPRFEVYKAISREIRDIFAEHTAIIEPLSLDEAYLDVTENLQHI 129
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ +IA +R + E LT SAG++ N+ LAK+ SD KPNGQFV+ +M F+
Sbjct: 130 PVA-TDIATAIRAKILRETCLTASAGISYNKFLAKLASDHRKPNGQFVI-TPKMGP-AFV 186
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGS 179
LP+ K GIG T + + GI T +M Q + A F + A ++ + G+
Sbjct: 187 EELPVGKFHGIGPATNAKM-NRLGIFTGMDMRNQTLEFMNAHFGKAGA-YYYWISRGVDE 244
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E TFS +TE AL+ +L + + + + G GRT+TLK+K
Sbjct: 245 RPVRANRIRKSVGAENTFSGDLTEFAALVA-ELDPLVDKIWGHCESTGNFGRTVTLKVKF 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNED 288
+ FE+ TR+ +L ISS +D+ + LL++E+P +RL+G+ ++ +
Sbjct: 304 SDFEIITRSRSLASAISSRQDLGRLTIGLLESEMPTPKPVRLLGVSLSSLQSE 356
>gi|386399214|ref|ZP_10083992.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM1253]
gi|385739840|gb|EIG60036.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM1253]
Length = 367
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 163/311 (52%), Gaps = 24/311 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R +F ++ SLDEAYLD+TE
Sbjct: 69 MPSVTAKRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTAIIEPLSLDEAYLDVTE----- 123
Query: 61 GISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +IA ++R + E GL SAG++ N+ LAK+ SD KPNGQFV+ +
Sbjct: 124 NLQGIPLARDIALKIRERIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGP- 182
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +LP+ K GIG T + + + Q + A F S A ++ + G
Sbjct: 183 -AFVETLPVGKFHGIGPATGAKMNALGMFTGLDIRRQTLEFMNANFGKSGA-YYYWISRG 240
Query: 177 LGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ R RKSI +E TFS +TE L+ +L + + + + G RGRT+TLK
Sbjct: 241 VDERPVRANRVRKSIGAETTFSSDLTEFDTLVA-ELKPLVDKVWRHCEATGSRGRTVTLK 299
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT--QFNEDKV 290
+K A FE+ TR+ + ++ +D+ + A LL+ E+P+ S+RL+G+ ++ Q +D
Sbjct: 300 IKFADFEIITRSRSALSPVAGRDDLERLACGLLEGEMPLPKSVRLLGVSLSSLQAGDD-- 357
Query: 291 RAPSDPTQKTL 301
++P Q TL
Sbjct: 358 ---AEPPQLTL 365
>gi|152979117|ref|YP_001344746.1| DNA polymerase IV [Actinobacillus succinogenes 130Z]
gi|150840840|gb|ABR74811.1| DNA-directed DNA polymerase [Actinobacillus succinogenes 130Z]
Length = 357
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 156/300 (52%), Gaps = 22/300 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP+LI +P T Y S ++F +Y SLDEAYLD+T+ +
Sbjct: 62 MPTAQAVKLCPDLIVLPVRMTLYKQVSQQIHQIFHRYTDIIEPLSLDEAYLDVTDSGKCC 121
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IA+E+R ++++E LT SAG+AP + LAK+ SD NKPNGQFV+ + V F+
Sbjct: 122 G-SATWIAQEIRQAIFDELHLTASAGIAPLKFLAKIASDQNKPNGQFVINPEN--VTEFV 178
Query: 121 SSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+LP+RKI G+GKVT EH+L G+ TCE++ G S+L F G+
Sbjct: 179 RTLPLRKIPGVGKVTSEHLLE--MGLYTCEDVQHAGLSVLLNRFG-KIGKRIWDFSHGID 235
Query: 179 STNTPQARFRKSISSERT-----FSVTEDKALLYRKLAEIA-EMLSADMQKEGLRGRTLT 232
R RKS+ ERT F++ + A+L +E+ +L A R R +
Sbjct: 236 EREVQPHRERKSVGVERTLSQNIFTLEQGMAVLEELCSELKRRILRAKPDISLSRYRKMG 295
Query: 233 LKLKTASFEVRT---RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 289
+KLK F+V T AV Q+ E S + + S+RL+GL VT E+K
Sbjct: 296 VKLKFDDFQVTTLEKSAVEFQQ-----ETFATLLSQIWQRAEGRSVRLVGLHVTIPEEEK 350
>gi|209559938|ref|YP_002286410.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
gi|209541139|gb|ACI61715.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
Length = 364
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 166/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFALYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALFQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|407716219|ref|YP_006837499.1| DNA-directed DNA polymerase protein [Cycloclasticus sp. P1]
gi|407256555|gb|AFT66996.1| DNA-directed DNA polymerase protein [Cycloclasticus sp. P1]
Length = 365
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 136/253 (53%), Gaps = 7/253 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IF+P F Y S + ++F +Y + SLDEAYLD++ +
Sbjct: 61 MPCSRAYRLCPQAIFIPPRFDAYKAVSKIIHEIFWRYATDVEPLSLDEAYLDVSHSSEYK 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G S IAE ++ + E L SAGV+ N+ LAK+ SD++KP+G +V+ P A F
Sbjct: 121 G-SATRIAEAIKHDIKAETQLIASAGVSYNKFLAKIASDMDKPDGLYVIRPEQGEA---F 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I++LPI G+G TE I + GI T ++ K S+ +A++F + G+
Sbjct: 177 IATLPIGSFYGVGPATE-IKMNKLGIKTGRDLRSKSSVELTKHFGKSAEYFFQIARGIDH 235
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E TF DK LL KL ++A+ + ++ + +T+T+K+K A
Sbjct: 236 RPVRSTRIRKSLGKETTFKTDVYDKTLLLEKLNQLAQKVFENLAAQQFMAKTITVKIKYA 295
Query: 239 SFEVRTRAVTLQK 251
+F+ TR+ + K
Sbjct: 296 NFKSVTRSYSSTK 308
>gi|339017671|ref|ZP_08643821.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
gi|338753217|dbj|GAA07125.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
Length = 367
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 135/263 (51%), Gaps = 11/263 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A++ CP L+FVP F Y S+ +F +Y SLDEAYLD+T+ R
Sbjct: 60 MPSVVAKRKCPNLVFVPPRFEVYRAVSNQIHAIFARYTALIQPLSLDEAYLDVTQPLLPR 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ I IA+E+R ++ E GLT SAG++ N+ LAK+ SD KPNGQFV+P A F+
Sbjct: 120 PYATI-IAQEIRAAILAETGLTASAGISYNKFLAKLASDYRKPNGQFVIPPG--AGEAFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+ GIG T + + GI T ++ Q S L F + A + G+ G
Sbjct: 177 ADLPVSAFHGIGPATAARM-NSLGIYTGADLRTQSLSTLAHHFGKAAAFYH---GIARGE 232
Query: 180 TNTPQA--RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
N P R RKSI E TF A L+ L +++ + K L GRT+TLKL+
Sbjct: 233 DNRPVEVNRPRKSIGKETTFERDIRLPADLHAALGNLSQAVWQASAKRTLSGRTVTLKLR 292
Query: 237 TASFEVRTRAVTLQKYISSSEDI 259
F TR+ +L + S +
Sbjct: 293 YEDFTQLTRSKSLPHCVQGSAQL 315
>gi|383480538|ref|YP_005389432.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|383494519|ref|YP_005412195.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
gi|378928528|gb|AFC66734.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|378930246|gb|AFC68663.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
Length = 364
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVIMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|424744843|ref|ZP_18173126.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
gi|422942623|gb|EKU37670.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
Length = 351
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 152/286 (53%), Gaps = 11/286 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A TFI LP+
Sbjct: 120 EVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--TFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 178 KKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQLYLYAQ-GIDHRPVQ 234
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLVQCQPYWQGLAEKVWQTLEKKQLNARGVNIKLKLKNFQTL 294
Query: 244 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 295 QHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|50914926|ref|YP_060898.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|306826715|ref|ZP_07460017.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
gi|73620812|sp|Q5XA48.1|DPO4_STRP6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|50904000|gb|AAT87715.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|304431004|gb|EFM34011.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
Length = 364
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 166/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|242277745|ref|YP_002989874.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
gi|242120639|gb|ACS78335.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
Length = 389
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 148/289 (51%), Gaps = 6/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP+L V +Y S Y P AS+DEAY+DIT +
Sbjct: 57 MPVRQALKLCPQLQVVSGSRHRYKEISRKVMAALSNYSPIVEQASIDEAYIDITGTEKLF 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G + ++IA ++ + + GLT S G+AP + LAK+ SD+NKP+G ++ ++ V F+
Sbjct: 117 G-TPLQIARSIKADIRKATGLTASVGIAPVKFLAKIASDLNKPDGISIITAEQ--VQDFL 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP+ KI G+GK LR +GI ++ + G G+ T
Sbjct: 174 KTLPVEKIPGVGKKALPRLRS-YGITYAADLRRYPPEFWKERFGERGLVLYEKGAGIDPT 232
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
+ KS S+E TF D L L + +E ++AD++K G++GRT+TLK+K
Sbjct: 233 PVTEGGAMKSSSAENTFGEDVSDIHTLKTLLLKQSERIAADIRKHGVKGRTVTLKVKFPD 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNE 287
F TR+ TL S + I K A LL AELP+ +RLIG+ ++ F E
Sbjct: 293 FRQITRSRTLDSRTSHAGTIYKTACSLLDAELPIGPIRLIGVGISNFEE 341
>gi|421656075|ref|ZP_16096386.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
gi|408506381|gb|EKK08092.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
Length = 351
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 155/287 (54%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A +FI LP+
Sbjct: 120 EVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--SFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP- 183
+KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P
Sbjct: 178 KKIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPV 233
Query: 184 QA-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
QA R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 234 QAERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 294 LQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|167644442|ref|YP_001682105.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167346872|gb|ABZ69607.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 375
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 154/296 (52%), Gaps = 17/296 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A CP+L+FVP F Y S ++F Y SLDEAYLD+T R
Sbjct: 61 MPSTTALAKCPQLVFVPPRFEVYKAVSRQIHEIFADYTDLIEPLSLDEAYLDVT--ANRR 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + E A+E+R + E GLT SAGV+ N+ LAK+ SD KPNGQFV+P + F
Sbjct: 119 GLETASETAKEIRARILETTGLTASAGVSYNKFLAKLASDQRKPNGQFVVPPGKGE--AF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LPI + G+G VTE ++ + G++T E++ ++ + ++ ++ G
Sbjct: 177 VQTLPIGRFHGVGAVTEAKMKRL-GVHTGEDLHRQSLAFLQQHFGRSGPWYYAIARGEDD 235
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD-----MQKEGLRGRTLTLK 234
R RKS SE TF D+ + + E + AD K G R RT+T+K
Sbjct: 236 RRVNPDRVRKSSGSETTF----DQDHIAPEPIEAGVLAMADDVWAWCAKTGDRARTVTVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNED 288
+K A F+ TR+ + ++ E + + + L+++ P + +RL+G+ ++ F ++
Sbjct: 292 IKWADFQQATRSRSRPSPVADHETLRQTSLDLIRSVYPPRLGIRLVGVTLSNFEQE 347
>gi|408793588|ref|ZP_11205194.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408462092|gb|EKJ85821.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 358
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 13/296 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+P F A KLCP+ IF P F Y S R +F +Y SLDEAYLD+T +
Sbjct: 57 IPCFQAYKLCPDAIFTPPRFEVYKSISKEIRSIFLEYTDLVEPLSLDEAYLDVTSNKLQI 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
++ IA+E+R +++ GLTCSAGVA N+ LAK+ S+ NKPNG + VLP + F
Sbjct: 117 PLAST-IAKEIRKKIFDRTGLTCSAGVAQNKFLAKMASEKNKPNGLYVVLPGEE---EKF 172
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +P+ GIGK T L + E + S L F A F+ + GL
Sbjct: 173 LDDIPLYSFFGIGKKTYERLSQLGYTKGSELRKAEESFLVGEFGKMGAVFY-RMARGLDD 231
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI E TFS +ED A L L +++ L M ++ +G+TLTLK+K
Sbjct: 232 REVIPFRDPKSIGVETTFSHDSEDFAYLLLTLENLSKELELRMGRKNKQGKTLTLKIKFE 291
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL------KAELPVSLRLIGLRVTQFNED 288
F V+ ++++ + ++++ + +S LL E +RL+G+ VT F+ D
Sbjct: 292 DFTVKQKSISSESVFYLADNLFQQSSNLLANVWKENTEPMKKIRLLGISVTNFSSD 347
>gi|386363358|ref|YP_006072689.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
gi|350277767|gb|AEQ25135.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
Length = 364
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 166/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CPE IF+ ++ KY + R++F +Y S+DEAYLD+T + GI S
Sbjct: 75 AYERCPEAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|392329945|ref|ZP_10274561.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
gi|391419817|gb|EIQ82628.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
Length = 364
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 167/301 (55%), Gaps = 34/301 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+T+ + S +
Sbjct: 75 AYERCPKAIFISGNYDKYRSVGHQIRRIFRRYTDLVEPMSIDEAYLDVTDNKLDIK-SAV 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP G VLP D ++F++ LP
Sbjct: 134 KIAKLIQHDIWQEVGLTCSAGVSYNKFLAKLASDFEKPRGLTLVLPQD---ALSFLAKLP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----GS 179
I K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 191 IEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARGI 242
Query: 180 TNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRTL 231
+++P R RKSI SERT++ LLY++ AEI A+ ++A +Q+ G+T+
Sbjct: 243 SHSPVKPDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQEHKKLGKTV 297
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNEDK 289
LK++ A F T+ VTL + + I + A+ + + E PV +RL+G+ +T EDK
Sbjct: 298 VLKVRYADFTTLTKRVTLTELTREAAQIEQVAADIFDSLIENPVGIRLLGVTMTNL-EDK 356
Query: 290 V 290
V
Sbjct: 357 V 357
>gi|260909969|ref|ZP_05916656.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635919|gb|EEX53922.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
Length = 365
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 23/302 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M G A+++CPELI +P +F KY S +++F +Y SLDEAYLD+T+ ++
Sbjct: 62 MSGVQAKRMCPELILIPPNFKKYKQVSQQVQEIFHRYTDIVEPLSLDEAYLDVTQ--NKQ 119
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI ++IA+ ++ +Y+E LT SAGV+ N+ LAKV SD KPNG V+ R M F
Sbjct: 120 GIELAVDIAKRIKQEIYDELHLTASAGVSFNKFLAKVASDFRKPNGITVIHPSR--AMQF 177
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPI G+G T + + N + L VF + ++ + +
Sbjct: 178 IDKLPITDFWGVGHKTAETMHAMGIFNGADLRQLSRLRLRQVFGKAGETYY-NFARAIDP 236
Query: 180 TNTPQARFRKSISSERTFSVTEDKA-------LLYRKLAEIAEMLSADMQKEGLRGRTLT 232
RKS+ ERTF ED + LYR + E+ E L ++ +GRTLT
Sbjct: 237 RPVEPHWVRKSVGCERTFE--EDSSNPNVLLTELYRLVLELVERL----KRNDFKGRTLT 290
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 289
LK+K F TR+ T + E+IL A LL +++ S +RL+G++V+ N+
Sbjct: 291 LKVKFHDFTQITRSRTALHILRKKEEILPIAKALL-SDVDYSSHPIRLLGVQVSNINDGP 349
Query: 290 VR 291
R
Sbjct: 350 HR 351
>gi|262280632|ref|ZP_06058415.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
gi|262257532|gb|EEY76267.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
Length = 351
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 151/286 (52%), Gaps = 11/286 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A FI LP+
Sbjct: 120 EVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--NFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 178 KKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAILVHHFGKYGQQLYL-YAQGIDHRPVQ 234
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQSLEKKQLNARGVNVKLKLKNFQTL 294
Query: 244 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + ++ I S D+++ +LL + ++P RLIG+ V Q
Sbjct: 295 QHSKSFKRPIQSLHDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|85859606|ref|YP_461807.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
gi|85722697|gb|ABC77640.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
Length = 362
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 156/293 (53%), Gaps = 11/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+P D+ Y S + V +DEAYLDI+E R+
Sbjct: 71 MPLRTAYKLCPRAIFLPVDYKAYLAVSRYFKAVLLNITTIMEDVGIDEAYLDISE-NRD- 128
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +I+E+++T +YE+ GLTCS G+APN+LLAK+ SD+NKP+G + + + +
Sbjct: 129 --TDEKISEKIKTGIYEKTGLTCSIGIAPNKLLAKIASDMNKPDGLTIFSGED--IENRL 184
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
LPIRK+ GIG TE L+ I T ++ +L A F S + G+
Sbjct: 185 WPLPIRKLYGIGPKTEEHLK-ALNIATIGQLAALPPEVLVARFGPSYGHYLHEASRGIDE 243
Query: 180 TNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ + KS S E TF V E + + R LAE+ + + +D+ ++G R + LK++ +
Sbjct: 244 SPIITSWEPKSFSREITFQVDEKNWQAIARTLAELTKEVVSDLAEKGYAARNVILKIRYS 303
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELP-VSLRLIGLRVTQFNEDK 289
F TRA ++ + + E+I + A S L + +L +RL+G+RV + + K
Sbjct: 304 DFRTVTRACSIDQAVGKEEEIRRMAFSCLKRVDLSGKKIRLVGVRVGRLEKIK 356
>gi|218961283|ref|YP_001741058.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans]
gi|167729940|emb|CAO80852.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 353
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 153/289 (52%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M + A LCPE IF+ F Y S R++F ++ SLDEAYLD+TE +
Sbjct: 57 MSSYQAWNLCPEAIFIHPHFNLYKKVSHQIREIFYQWTDLVEPLSLDEAYLDVTE-NKLG 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++IA+ ++ + E+ GLTCSAGV+ N+ LAK+ SD+NKP+G +P ++ + + F
Sbjct: 116 EDDAVKIAKLIKAEILEKTGLTCSAGVSYNKFLAKIGSDLNKPDGLTYIPPEKASEILF- 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K GIGKVT L+ GIN ++ + F+ V G+
Sbjct: 175 -ALPIEKFYGIGKVTSAKLKKK-GINNGADLYKYELKDLIRLLGKAGHFYYYVVRGIDKR 232
Query: 181 NTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
KS+S E TF D L L ++AE LS ++++G+RG +TLK+K +
Sbjct: 233 EVITEFEPKSLSCETTFYEDIDNLDYLLIILQQLAERLSNRLRQKGIRGNNITLKIKYDN 292
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 286
FE+ TR+ YI+ ++++ + LL A S +RL+GL + + +
Sbjct: 293 FELITRSSNTPSYINKADELFAYGEQLLIANWDSSRKVRLLGLAIGKLD 341
>gi|383640097|ref|ZP_09952503.1| DNA-directed DNA polymerase [Sphingomonas elodea ATCC 31461]
Length = 361
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 150/289 (51%), Gaps = 9/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+P A + CP+LIFV F Y S +F Y SLDEAYLD+TE R
Sbjct: 61 LPSVTALRRCPDLIFVRPRFDVYKAVSQAIHAIFADYTDLIQPLSLDEAYLDVTEDRRRL 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G + A+E+R + E GLT SAG++ N+ LAK+ SD KPNGQF + + A ++
Sbjct: 121 G-TAWATAKEIRARILAETGLTASAGISYNKFLAKLASDHRKPNGQFAVTPEMGAA--WV 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP+ + G+G VT +R + GI T ++ K A S A+++ + G+
Sbjct: 178 ETLPVSRFHGVGPVTAAKMRRL-GIETGADLRAKSMDFLARHFGSNAEWYHQIVRGVDER 236
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS SE TFS +T+D + L + ++ + +G GRT T+K+K A
Sbjct: 237 PVNPNRERKSSGSETTFSRDLTDDAEIEAAVLGQADDVWEWCERTQGF-GRTATVKIKYA 295
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
F++ TR+ + ++S E + + LL+ LP +RL+G+ V+ F
Sbjct: 296 DFQIITRSRSQPAPMTSREQLHAASLALLRLVLPTPKGIRLVGVTVSNF 344
>gi|299771913|ref|YP_003733939.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
gi|298702001|gb|ADI92566.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
Length = 351
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 152/286 (53%), Gaps = 11/286 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S
Sbjct: 61 ARKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A +FI LP+
Sbjct: 120 EVAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--SFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 178 KKIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAILVHHFGKYGQQLYLYAQ-GIDHRPVQ 234
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLVQCQPYWQGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 244 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 286
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 295 QHSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|299821605|ref|ZP_07053493.1| DNA-directed DNA polymerase IV [Listeria grayi DSM 20601]
gi|299817270|gb|EFI84506.1| DNA-directed DNA polymerase IV [Listeria grayi DSM 20601]
Length = 356
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 154/291 (52%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP+ IF+ + + Y S+ R +F +Y SLDEAYLD+T+ +
Sbjct: 60 MPTKQAVKLCPQGIFIHGNMSHYVEVSNQIRAIFHRYTDLIEPLSLDEAYLDVTD--NKV 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S +A++++ +++ E GLT SAGV+ N+ +AK+ SD +KP+G V+P + F
Sbjct: 118 GMKSATYLAQDIQRTIFRELGLTASAGVSYNKFIAKIASDYHKPHGITVVPPEEAE--AF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGL 177
+ +PI K G+GKVT L + GI T ++ + LL + H + V G
Sbjct: 176 LEGIPITKFYGVGKVTAEKLHRL-GIYTGADLKAWSEWDLLRELNKHGY-QLYRHV-RGQ 232
Query: 178 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
S R RKS+ E TF D+ ++ R L + A +S +QK G+T+ LK++
Sbjct: 233 SSNIVNPNRDRKSVGKETTFEKDVWDEIMIQRYLRKFAAQISERLQKIHKNGKTVVLKIR 292
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
F TR +TL +Y++ SE I + LL A S+RLIGL VT
Sbjct: 293 YRDFTTYTRRLTLSEYVNDSEAIFQAGKALLNASYSGEESIRLIGLTVTNL 343
>gi|150377463|ref|YP_001314058.1| DNA polymerase IV [Sinorhizobium medicae WSM419]
gi|150032010|gb|ABR64125.1| DNA-directed DNA polymerase [Sinorhizobium medicae WSM419]
Length = 378
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 147/289 (50%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S +F +Y P SLDEAYLD+TE +
Sbjct: 80 MPSVTAKRKCPDLIFVPHRFEVYRAVSRQIHAIFAEYTPLIEPLSLDEAYLDVTENLKGM 139
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEE+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+ F+
Sbjct: 140 ELA-TEIAEEIRARIRAETGLTASAGVSYNKFLAKIASDQRKPDGLFVITPKHGP--EFV 196
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 197 QMLPVKKFHGVGPATAEKMKRL-GIETGADLKARDLAFLQQHFGKSGPYFYWIARGIDGR 255
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ +E TF D L + + + + +RG+T+TLK+K +
Sbjct: 256 EVKPDRIRKSVGAEDTFREDIHDLETAREGLRPLMDKVWHYCEAGSIRGKTVTLKVKWSD 315
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 286
F TR+ TL ++S+ ++ + +LL + P + +RL+G+ ++
Sbjct: 316 FTQITRSKTLPAPVASAAEMAQIVDLLLSSIFPAAKGIRLLGVTLSSLR 364
>gi|259046578|ref|ZP_05736979.1| DNA-directed DNA polymerase [Granulicatella adiacens ATCC 49175]
gi|259036743|gb|EEW37998.1| DNA-directed DNA polymerase [Granulicatella adiacens ATCC 49175]
Length = 352
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 160/297 (53%), Gaps = 15/297 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP+ I P +++ Y S R+VF + S+DEAYLD+T R
Sbjct: 57 MPTAKAMKLCPKAILTPGNYSLYKEISSQVREVFKSFTNMIEPLSIDEAYLDVTN--NSR 114
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S +A ++ VYE+ GLTCS GV+ N+ LAK+ S KP+G V+ + F
Sbjct: 115 GIASATLVAHLIQKEVYEKTGLTCSVGVSFNKFLAKMASGYQKPSGITVITPEN--AQEF 172
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLG 178
I ++PI G+GKV+ LR GI T E++L + L + F + + V G+
Sbjct: 173 IRTIPIGDFYGVGKVSAEKLRRA-GIETGEDLLHLSKAELESRFGNLGPRLYAQVR-GIS 230
Query: 179 STNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ SERT T D +L L + + +++ +QK L RT++LKL+
Sbjct: 231 NDQLTLYRERKSMGSERTLIKDTTDHGILSEYLEKFSLEIASMLQKRALASRTISLKLRD 290
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGLRVTQFNE-DKV 290
++F +++VTL+ Y + E+IL+ A L + E P+ RLIGL V+ + DK+
Sbjct: 291 SNFNTTSKSVTLRDYFNKKEEILQLALQLFEEMMDEKPI--RLIGLSVSHLEKTDKI 345
>gi|327312331|ref|YP_004327768.1| DNA polymerase IV [Prevotella denticola F0289]
gi|326945721|gb|AEA21606.1| DNA polymerase IV [Prevotella denticola F0289]
Length = 359
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 162/314 (51%), Gaps = 27/314 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP L+ VP F +Y S VF +Y SLDEA+LD+TE ++
Sbjct: 56 MPMAQARRRCPHLVVVPCHFDRYKAVSRQIHAVFHEYTDLVEPISLDEAFLDVTE--NKK 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ ++IA E++ + + LT SAG++ N+LLAK+ SD+ KP+G F + DR + F
Sbjct: 114 GMDLAVDIAREIKQKILDRTSLTASAGISYNKLLAKISSDMRKPDGLFTVHPDR--ALGF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLG 178
+ SLP+ K+ G+G T + D+ G+ T ++ Q L VF + + G+
Sbjct: 172 VGSLPVEKLWGVGPKTAKRMHDM-GVFTGGQLRQVSRRHLVQVFG-KMGNIYYDFSRGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL-------LYRKLAEIAEMLSADMQKEGLRGRTL 231
+ RKS+ ERTF ED + LY + E+ E L+ + G GRTL
Sbjct: 230 NRPVVAVHERKSVGCERTF--LEDLHVGSKIIIELYHIVLELVERLA----RSGFEGRTL 283
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVTQFNE 287
TLKLK + TR++T Q+ + + +DIL A LLK + PV RL+GL V+
Sbjct: 284 TLKLKWDATTQITRSLTQQRVLRTKDDILPLAKQLLKETSCHDRPV--RLMGLSVSSPLP 341
Query: 288 DKVRAPSDPTQKTL 301
+K + P + L
Sbjct: 342 EKEESSHVPVEGLL 355
>gi|71911381|ref|YP_282931.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
gi|71854163|gb|AAZ52186.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
Length = 364
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEIA---EMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI+ + ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|162146654|ref|YP_001601113.1| DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209543354|ref|YP_002275583.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
gi|161785229|emb|CAP54775.1| putative DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209531031|gb|ACI50968.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
Length = 381
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 146/289 (50%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP+LIFVP F Y S +F +Y SLDEAYLD+T+ +R
Sbjct: 74 MPSVTARRKCPDLIFVPPRFDVYRAVSAQIHAIFARYTGLIQPLSLDEAYLDVTDPLIDR 133
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+++R ++ E GLT SAGV+ N+ LAK+ SD KP+G +V+ RM F+
Sbjct: 134 -PSATAIAQDIRAAIRAETGLTASAGVSYNKFLAKLASDYRKPDGLYVI-TPRMGP-RFV 190
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SLP+ GIG T +R GI T ++ A A F+ + G
Sbjct: 191 ESLPVEAFHGIGPATAARMR-AMGIRTGLDLRAHDMDSLARHFGKAAAFYYGIARGRDDR 249
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ +ERTF D A L + + + + +K GL RT+T+K+K A
Sbjct: 250 PVEADRRRKSVGTERTFEHDIHDWAEALSALDGMVDRVWGECRKRGLVARTVTVKVKYAD 309
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F+ RA +L + +++ + A LL+ P +RL+G+ ++ +
Sbjct: 310 FQQTGRARSLPQPLAAHAVFRQVACDLLRPFFPPERGIRLLGVTLSNLD 358
>gi|420143241|ref|ZP_14650742.1| DNA polymerase IV (Pol IV) [Lactococcus garvieae IPLA 31405]
gi|391856760|gb|EIT67296.1| DNA polymerase IV (Pol IV) [Lactococcus garvieae IPLA 31405]
Length = 365
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 163/297 (54%), Gaps = 22/297 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ +F+ ++ KY S+ R++F +Y AAS+DEAYLD+T + S I
Sbjct: 75 AYELCPQAVFISGNYEKYRAISEQVREIFNRYTDEVEAASIDEAYLDVTR-NKIGSTSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G +LP A F++ LP
Sbjct: 134 KVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTVILPE---AAKDFLAELP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L ++ GI T E+ LL A F + FL G+
Sbjct: 191 VEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAERFGVYGWNLFLKAN-GIHHAPVI 248
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+R RKS+ ERT+S LLY ++L ++E +S ++++ L G T+ LKL+
Sbjct: 249 TSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLSERVSTNLKRHQLLGDTVVLKLRY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDKVR 291
+ F+ T+ L + I+ + + A LL+ + + +RL+G+ +T F +++R
Sbjct: 304 SDFKTITKRKKLPEKINEATALAHVAQDLLEEVDYDETLGVRLLGVTLTGFGAEELR 360
>gi|350566930|ref|ZP_08935549.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
gi|348660650|gb|EGY77359.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
Length = 349
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 150/288 (52%), Gaps = 13/288 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+ CP LI VP +Y S + Y S+DEAYLD++
Sbjct: 58 MPLFIAKNSCPNLIIVPGRMQRYLEKSKEVFDILHSYTEILEKVSIDEAYLDLSN----- 112
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMTF 119
++ +++A++++ V + GLT S G++ N+ LAK+ SD NKP+G V+ ND V
Sbjct: 113 SLNSVDVAKQIKNEVKDRTGLTVSCGISYNKFLAKLASDWNKPDGLKVISKND---VPDI 169
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ L I+K+ G+G+ ++ LR++ GINT E+M Q L +F + + + G+
Sbjct: 170 LLPLDIKKVHGLGRKSQEKLRNI-GINTVEDMFQLDLEFLEKIFGKMGYEIYQRIR-GID 227
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R RKS+ ERTF T DK +L +L + + LS D+ + L +TLTLKLKT
Sbjct: 228 NRAVNSQRSRKSLGVERTFPDTRDKYILLNRLIQYSVELSKDLSSKNLGFKTLTLKLKTF 287
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQF 285
F++ T + T I+ ++I A L LRL+G+ +
Sbjct: 288 DFKINTHSKTYSHVINDKQEIENLALELFNTHYKGEKLRLMGISASNL 335
>gi|345430002|ref|YP_004823122.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
gi|301156065|emb|CBW15536.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
Length = 377
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 156/294 (53%), Gaps = 22/294 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP LI VP + Y S ++F +Y SLDEAYLD+T+ C +
Sbjct: 82 MPTAQAIKKCPNLILVPVNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVTD-CTQC 140
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P++ V F
Sbjct: 141 SGSATWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHE---VEQF 197
Query: 120 ISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLG 176
+ +LP++KI G+GKVT E +L+ G+ TCE+ +QK S+L +F + G
Sbjct: 198 VKTLPLKKIPGVGKVTSERLLK--MGLETCED-VQKLDQSILLNIFGKMGKRIW-DFSHG 253
Query: 177 LGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGLRG-RT 230
+ R RKSI ERT S + + ALL AE+ + L R
Sbjct: 254 IDEREIQAHRERKSIGVERTLSENIRHLEQGIALLDNLYAELIRRIERSAPNIPLTAFRK 313
Query: 231 LTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 283
+ +KLK F+V T T L I S + +L+ + + S+RL+GL VT
Sbjct: 314 IGVKLKFEDFQVTTLEKTGLPLSIKSFQQLLEQ---IWQRSQGKSIRLVGLHVT 364
>gi|421892458|ref|ZP_16323115.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
gi|379981806|emb|CCG26837.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
Length = 364
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 165/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D ++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIHRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D M F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AMCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + + I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNVAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|401424996|ref|XP_003876983.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493227|emb|CBZ28512.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 753
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 166/354 (46%), Gaps = 59/354 (16%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA----------- 49
MPGFI +LCP+L+ VPTDF S + V YDP+ +DE
Sbjct: 282 MPGFIGMRLCPQLVIVPTDFAACRVESAKFKGVVRDYDPDAQLLGMDEVMMCLDDYLARH 341
Query: 50 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 109
++D T R ++ + EE R + E GLT SAG+AP LAK+ S+ NKPNGQF +
Sbjct: 342 HVDATTHARRFDVAE-RVIEECRRRIAEATGLTVSAGIAPTPTLAKMASNYNKPNGQFAV 400
Query: 110 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 168
R AVM +++S+P+R++ GIGK E +L + GI T E+ ++ L + + T +
Sbjct: 401 RLFSREAVMNYLASIPVRQVPGIGKSRESVLAGL-GIRTLGEVYEQRHRLFYILTRKTYE 459
Query: 169 FFLSVGLGLGST-----NTPQARF---------------------RKSISSERTFSVTED 202
F L+ +G+G P + RKS+ ERTF +
Sbjct: 460 FLLASSIGIGGMYDSLETAPSSSAGATAGQTVAAMDGASNEDDGGRKSVGHERTFYKLTN 519
Query: 203 ----KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSED 258
+A+ Y+ L E L+ +EGL + LKLK SF V+ + +L Y E
Sbjct: 520 PMALQAIAYKNLRRSHETLA----EEGLLCSQVVLKLKRRSFHVKQHSKSLNVYTDDHEV 575
Query: 259 ILKHASVLLKAELPV-----SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTS 307
+ + LL LPV RL+G+R+ + + R SD T T +TS
Sbjct: 576 LRRALDELL---LPVVGDFAEFRLLGVRLEKL---RRRPQSDGTGGATTLTVTS 623
>gi|86360880|ref|YP_472767.1| DNA polymerase IV [Rhizobium etli CFN 42]
gi|86284982|gb|ABC94040.1| DNA-directed DNA polymerase protein [Rhizobium etli CFN 42]
Length = 363
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 152/291 (52%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+T +
Sbjct: 65 MPSVTAKRKCPDLIFVPPRFDIYKAVSQQIREIFAEYTPMIEPLSLDEAYLDVTHNLKGM 124
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 125 EIA-TEIALEIRARIKAITGLNASAGISYNKFLAKMASDLNKPNGQAVITPRNGPA---F 180
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGL 177
+ +LP++K G+G T + + GI+T ++ KG L + H + +F + G+
Sbjct: 181 VEALPVKKFHGVGPATAEKMHRL-GIDTGADL--KGKTLEFLVEHFGKSGPYFYGIARGI 237
Query: 178 GSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ +E TFS R+ L + E + + G+ +T+ LK+K
Sbjct: 238 DERQVKPNRVRKSVGAEDTFSQDLHAYEPAREALQPLIEKVWGYCEANGIGAKTVMLKVK 297
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
A F TR+ T+ +++ D+ + +LL P +RL+G+ ++
Sbjct: 298 YADFNQITRSKTVPIPLAAIADLEEIVGLLLAPIFPPRKGIRLLGVSLSSL 348
>gi|430761508|ref|YP_007217365.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011132|gb|AGA33884.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
Length = 372
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 150/296 (50%), Gaps = 15/296 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +L P+ I +P DF Y YS L + P +DE Y+D+TE+ + +
Sbjct: 74 AARLAPDAILLPADFDAYRRYSRLFKTAVAHIAPRIEDRGIDEIYIDLTEMSADT----L 129
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A E++ +V E GL+CS G+APN+LLAK+ SD++KP+G VL +A ++ LP+
Sbjct: 130 PLANEIKAAVREATGLSCSIGIAPNKLLAKIASDLDKPDGLTVLAPSDLAARVWL--LPV 187
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG-----S 179
KI GIG L+ GI T ++ +LL F + + GL +
Sbjct: 188 NKINGIGPKAGDRLQG-LGIRTIGDLAGAAPALLERHFGARMGGWLIRAAHGLDEQPIVT 246
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
+ P++ R++ + ER +D+ALL L + E ++ D+ G RGRT+ +KL+
Sbjct: 247 ESEPRSMTRET-TFERDLHPRQDRALLTAALTGLCERVAGDLAARGYRGRTIGIKLRYHD 305
Query: 240 FEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 294
F TR VTL+ + +ED+L + L + L +RL+G+R D P+
Sbjct: 306 FRTLTRDVTLRNPVCRAEDLLASSRECLRRVPLDRRIRLLGVRAGALVADSQEGPA 361
>gi|421595932|ref|ZP_16039866.1| DNA polymerase IV, partial [Bradyrhizobium sp. CCGE-LA001]
gi|404271960|gb|EJZ35706.1| DNA polymerase IV, partial [Bradyrhizobium sp. CCGE-LA001]
Length = 393
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 155/294 (52%), Gaps = 17/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R +F ++ SLDEAYLD+TE
Sbjct: 96 MPSVTAKRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTDIIEPLSLDEAYLDVTE----- 150
Query: 61 GISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +IA ++R V E GL SAG++ N+ LAK+ SD KPNGQFV+ +
Sbjct: 151 NLQGIPLARDIALKIREKVRAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGP- 209
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGL 175
F+ LP+ K GIG T + + G+ T ++ Q + + A F S A ++ +
Sbjct: 210 -AFVEMLPVGKFHGIGPATAAKM-NALGLFTGLDIRNQTLAFMNANFGKSGA-YYYWISR 266
Query: 176 GLGSTNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
G+ R RKSI +E TFS D L +L + + + + G RGRT+TLK
Sbjct: 267 GVDERPVRANRIRKSIGAENTFSTDLDAYDALAAELRPLVDKVWRHCEATGNRGRTVTLK 326
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 286
+K A FE+ TR+ ++ ++ +D+ + A LL+ E+P+ +RL+G+ ++
Sbjct: 327 IKFADFEIITRSRSIPAPVARRDDLERLACGLLEIEMPLPKRVRLLGVSLSALQ 380
>gi|15675671|ref|NP_269845.1| DNA polymerase IV [Streptococcus pyogenes SF370]
gi|22095631|sp|Q99Y66.1|DPO4_STRP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13622885|gb|AAK34566.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes M1
GAS]
Length = 364
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEIA---EMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI+ + ++A +Q G+T
Sbjct: 242 ISNSPVKYDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|424917329|ref|ZP_18340693.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
gi|392853505|gb|EJB06026.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
Length = 363
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 150/289 (51%), Gaps = 9/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R++F +Y P SLDEAYLD+T +
Sbjct: 65 MPSVTAKRKCPDLIFVLPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTHNLKGM 124
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + E GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 125 EIA-TEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 180
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T + + GI+T + +K + +F + G+
Sbjct: 181 VEALPVKKFHGVGPATAERMHRL-GIDTGASLKEKSLEFLVEHFGKSGPYFYGIARGIDE 239
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TFS R+ L + E + A + G+ +T+TLK+K A
Sbjct: 240 RQVKPNRVRKSVGAEDTFSQDLHTFEPAREGLQPLIEKVWAYCEANGIGAKTVTLKVKYA 299
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
F TR+ T+ + + D+ + S+LL P +RL+G+ ++
Sbjct: 300 DFNQITRSKTVPAPLPAIADLEEIISLLLVPIFPPRKGVRLLGVTLSSL 348
>gi|50083505|ref|YP_045015.1| DNA polymerase IV [Acinetobacter sp. ADP1]
gi|81613392|sp|Q6FFG4.1|DPO4_ACIAD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49529481|emb|CAG67193.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter sp. ADP1]
Length = 351
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 158/295 (53%), Gaps = 19/295 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ARKLCP+LI + +F KY S ++F ++ SLDEAYLD+TE
Sbjct: 56 MPMGQARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNL 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S ++A ++R ++E+ LT SAGVAPN+ LAK+ SD NKPNG V+ + VM FI
Sbjct: 116 P-SATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQ--VMQFI 172
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
+LP++KI G+G+VT+ L+ + + T ++ + ++L F +L G+
Sbjct: 173 QNLPLKKIPGVGRVTQDKLQQL-KLETLGDLQHIEEAVLIQHFGKYGKQLYL-YAQGIDH 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAE----IAEMLSADMQKEGLRGRTLTLKL 235
+ R R+ IS E TF D+ L + + +AE + +Q + L+ R + +KL
Sbjct: 231 RSVQAERVRQQISKETTF----DQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKL 286
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL----RLIGLRVTQFN 286
K F+V + + ++ + S ++ K LL E+ ++L RLIG+ + Q +
Sbjct: 287 KNKHFQVFQHSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQYRLIGVGLYQLS 340
>gi|342904369|ref|ZP_08726170.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
gi|341953609|gb|EGT80113.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
Length = 355
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 152/299 (50%), Gaps = 20/299 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP LI VP + Y S ++F +Y SLDEAYLD+T C++
Sbjct: 60 MPTAQAIKKCPNLILVPVNMALYKQVSVQIHQIFQRYTDIIEPLSLDEAYLDVTH-CQKC 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V F
Sbjct: 119 SGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VSEF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I +LP+ KI G+GKVT L D+ G+ TC ++ ++ G+
Sbjct: 176 IKTLPLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDD 234
Query: 180 TNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTL 231
R RKS+ E+T ++ + AL LY++L E +S ++ R +
Sbjct: 235 REVQAHRERKSVGVEQTLIENIHTIEQASALLNNLYQELIRRLERVSCNIPLSAF--RKI 292
Query: 232 TLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 289
+KLK F+V T T L + S + +L + K S+RLIGL V E+K
Sbjct: 293 GIKLKFEDFQVTTLEKTGLSLSLESFQQLLPQIFMRSKGR---SIRLIGLHVNLPEENK 348
>gi|254293831|ref|YP_003059854.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
gi|254042362|gb|ACT59157.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
Length = 360
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 155/282 (54%), Gaps = 12/282 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A+K CP+LIFVP F Y S+ R +F +Y SLDEAYLD+T+ +
Sbjct: 61 MASVAAKKRCPDLIFVPPRFDVYKSVSNQIRNIFAQYTHLIEPLSLDEAYLDVTDNLK-- 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S +IA E+R + +E GLT SAGV+ N+ +AK+ SD NKPNGQ V+P + F
Sbjct: 119 GIESATQIAMEIRAEILKETGLTASAGVSYNKFIAKLASDENKPNGQCVIPPK--SGEQF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
++ LPIR+ G+G VT + + GI T ++ + S L F +S AD++ + G
Sbjct: 177 VAGLPIRRFYGVGPVTAKKM-ERLGILTGADLKKADLSWLRQNFGNS-ADYYYAAARGKD 234
Query: 179 STNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ ERT+S + E + +L + ++ +L +++ G T+ LK+K
Sbjct: 235 DRIVQPNRIRKSVGVERTYSKDLFEKEEIL-TETEKLITLLWERIERANAVGHTIVLKVK 293
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 278
+ F+ TR+ TL+ I+ E + A +LL LP ++ I
Sbjct: 294 FSDFKQITRSHTLEHSITEIEHLDVSAQLLL-GHLPRPIKPI 334
>gi|238021390|ref|ZP_04601816.1| hypothetical protein GCWU000324_01289 [Kingella oralis ATCC 51147]
gi|237868370|gb|EEP69376.1| hypothetical protein GCWU000324_01289 [Kingella oralis ATCC 51147]
Length = 360
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 156/297 (52%), Gaps = 16/297 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A++LCP +F+P F Y S ++F + +LDEAYLD+T C ++ I+
Sbjct: 64 AKRLCPHAVFIPPQFALYRQVSRQIHQIFRLHTDLIEPLALDEAYLDVT--CNKQNIAYA 121
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 123
+IA +R ++ + GLT SAG+APN+ LAK+ SD KPNGQFV+ P + V F+ +L
Sbjct: 122 RDIALAIRAEIHRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIAPQN---VNAFLHTL 178
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
P+ KI G+GK T L + G T + LQ+ L + + L L G N P
Sbjct: 179 PLGKISGVGKKTLAKL-NAQGWRTVGD-LQRVPLGMLINLFGRWGYRLH-DLAHGVDNRP 235
Query: 184 --QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R R IS+E T + R + ++A L+ MQ+ G+TLTLKLKT+ F
Sbjct: 236 VEPERERVQISTEITLPDDLPLGQIVRHIPDLARDLAQQMQRRHTIGQTLTLKLKTSDFR 295
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDP 296
TR+ T + S++ +++ A L K +P RLIG+ ++ +D+ R P P
Sbjct: 296 TLTRSQTYSSALPSAQTLIQAAQQLAK-RMPSEHEYRLIGIGISHL-QDENRQPELP 350
>gi|385833731|ref|YP_005871506.1| DNA-damage-inducible protein P [Lactococcus garvieae Lg2]
gi|343182884|dbj|BAK61222.1| DNA-damage-inducible protein P [Lactococcus garvieae Lg2]
Length = 365
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 162/297 (54%), Gaps = 22/297 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ +F+ ++ KY S+ R++F +Y AAS+DEAYLD+T + S I
Sbjct: 75 AYELCPQAVFISGNYEKYRAISEQVREIFNRYTDEVEAASIDEAYLDVTR-NKIGSTSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP G +LP A F++ LP
Sbjct: 134 KVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPYGLTVILPE---AAKDFLAELP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L ++ GI T E+ LL A F + FL G+
Sbjct: 191 VEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAERFGVYGWNLFLKAN-GIHHAPVV 248
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+R RKS+ ERT+S LLY ++L ++E +S ++++ L G T+ LKL+
Sbjct: 249 TSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLSERVSTNLKRHQLLGDTVVLKLRY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDKVR 291
+ F+ T+ L + I+ + + A LL+ + + +RL+G+ +T F +++R
Sbjct: 304 SDFKTITKRKKLSEKINEATTLAHVAQDLLEEVDYDETLGVRLLGVTLTGFGAEELR 360
>gi|58580386|ref|YP_199402.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|188578682|ref|YP_001915611.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58424980|gb|AAW74017.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|188523134|gb|ACD61079.1| ImpB/MucB/SamB family [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 369
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 157/293 (53%), Gaps = 15/293 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP IFVP DF +Y S R++F ++ SLDEAYLD+T+ +
Sbjct: 66 MPAVRAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KT 123
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F
Sbjct: 124 GMQLATEIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAF 181
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ L + +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 182 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGID 239
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 240 ERPVEPDQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLATRRTERIGRTVVLKLK 297
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN 286
T++F + TR+ T ++ S E + + A L + ELP RL+G+ ++ F+
Sbjct: 298 TSNFRILTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFS 350
>gi|421836285|ref|ZP_16270813.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
gi|409741873|gb|EKN41498.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
Length = 337
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 150/288 (52%), Gaps = 11/288 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + +
Sbjct: 116 ---PIKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQD--MIPSIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
LPI KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQF 285
+F+ TR+ T+ YI ++I A +L +RLIGL V+
Sbjct: 289 NFQTHTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNL 336
>gi|393719670|ref|ZP_10339597.1| DNA polymerase IV [Sphingomonas echinoides ATCC 14820]
Length = 361
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 138/282 (48%), Gaps = 6/282 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+L+FVP F Y S R +F Y SLDEAYLD+TE
Sbjct: 65 MPSVTALRRCPDLVFVPPRFEAYRAVSAQIRAIFDDYTDLVEPLSLDEAYLDVTEDRHGL 124
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE++R + E LT SAGV+ N+ +AK+ SD NKP+G V+ A F+
Sbjct: 125 G-SARAIAEQIRARIKAETALTASAGVSYNKFIAKLASDQNKPDGLCVISPRHGA--AFV 181
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+SLP+++ G+G VT + GI T ++ ++ S D+ G+
Sbjct: 182 ASLPVKRFHGVGPVTARRM-AALGIETGADLRERPLAFLHAHFGSYGDYLYGAARGVDHR 240
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KS+ +ERTF A L+ L + E + + RGRT+TLKL+ +
Sbjct: 241 PVRSERPSKSVGAERTFETDLSAPADLHAALDRVGEAAWVRIDRHSARGRTVTLKLRFSD 300
Query: 240 FEVRTRAVTLQKYISSSEDI-LKHASVLLKAELPVSLRLIGL 280
F TRA +L + + HA + LP+ +RL+GL
Sbjct: 301 FRTITRARSLNSVVDRDAFFAIGHALLDAHLPLPLGVRLLGL 342
>gi|347522347|ref|YP_004779918.1| DNA-damage-inducible protein P [Lactococcus garvieae ATCC 49156]
gi|343180915|dbj|BAK59254.1| DNA-damage-inducible protein P [Lactococcus garvieae ATCC 49156]
Length = 365
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 162/297 (54%), Gaps = 22/297 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ +F+ ++ KY S+ R++F +Y AAS+DEAYLD+T + S I
Sbjct: 75 AYELCPQAVFISGNYEKYRAISEQVREIFNRYTDEVEAASIDEAYLDVTR-NKIGSTSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP G +LP A F++ LP
Sbjct: 134 KVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPYGLTVILPE---AAKDFLAELP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L ++ GI T E+ LL A F + FL G+
Sbjct: 191 VEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAERFGVYGWNLFLKAN-GIHHAPVV 248
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+R RKS+ ERT+S LLY ++L ++E +S ++++ L G T+ LKL+
Sbjct: 249 TSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLSERVSTNLKRHQLLGDTVVLKLRY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDKVR 291
+ F+ T+ L + I+ + + A LL+ + + +RL+G+ +T F +++R
Sbjct: 304 SDFKTITKRKKLSEKINEATTLAHVAQDLLEEIDYDETLGVRLLGVTLTGFGAEELR 360
>gi|373467387|ref|ZP_09558686.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
gi|371758922|gb|EHO47678.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
Length = 355
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 153/299 (51%), Gaps = 20/299 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP LI VP + T Y S ++F +Y SLDEAYLD+T C++
Sbjct: 60 MPTAQAIKKCPNLILVPVNMTLYKQVSAQIHQIFQRYTDIIEPLSLDEAYLDVTH-CQKC 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA+E+R ++++E LT SAG+AP + LAK+ SD+NKPNGQFV+ PN+ V F
Sbjct: 119 SGSATWIAQEIRQAIFDELKLTASAGIAPLKFLAKIASDMNKPNGQFVIKPNE---VSEF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I +LP+ KI G+GKVT L D+ G+ TC ++ ++ G+
Sbjct: 176 IKTLPLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDD 234
Query: 180 TNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTL 231
R RKS+ E+T ++ + AL LY +L E +++++ R +
Sbjct: 235 REVQAHRERKSVGVEQTLIENIHTIEQASALLNNLYDELIRRLERINSNIPLSAF--RKI 292
Query: 232 TLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 289
+KLK F+V T T L + S + +L + K S+RLIGL V E+K
Sbjct: 293 GVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---SIRLIGLHVNLPEENK 348
>gi|84622350|ref|YP_449722.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|123523174|sp|Q2P7M9.1|DPO4_XANOM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|84366290|dbj|BAE67448.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 359
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 157/293 (53%), Gaps = 15/293 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP IFVP DF +Y S R++F ++ SLDEAYLD+T+ +
Sbjct: 56 MPAVRAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F
Sbjct: 114 GMQLATEIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ L + +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 230 ERPVEPDQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLATRRTERIGRTVVLKLK 287
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN 286
T++F + TR+ T ++ S E + + A L + ELP RL+G+ ++ F+
Sbjct: 288 TSNFRILTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFS 340
>gi|424892013|ref|ZP_18315593.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424893756|ref|ZP_18317336.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393183294|gb|EJC83331.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393185037|gb|EJC85074.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 362
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 149/289 (51%), Gaps = 9/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ C +LIFVP F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 64 MPSVTAKRKCLDLIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + +A F
Sbjct: 124 DIA-TEIALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPRNGLA---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T + + GI+T ++ +K + +F + G+
Sbjct: 180 VEALPVKKFHGVGPATAEKMHRL-GIDTGADLKEKTLEFLVEHFGKSGPYFYGIARGIDE 238
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TFS R+ L + E + A + + +T+TLK+K A
Sbjct: 239 RRVKPDRVRKSVGAEDTFSQDLHSYEPAREGLQPLIEKVWAYCEANAIGAKTVTLKVKYA 298
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
F TR+ T+ + D+ LL P+ +RL+G+ ++
Sbjct: 299 DFNQITRSKTVPAALPGITDLEDIVDFLLAPIFPLRKGIRLLGVSLSSL 347
>gi|313206275|ref|YP_004045452.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|386321740|ref|YP_006017902.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|442314536|ref|YP_007355839.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
gi|312445591|gb|ADQ81946.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|325336283|gb|ADZ12557.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|441483459|gb|AGC40145.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
Length = 360
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 146/268 (54%), Gaps = 7/268 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A+K CP++IFV F +Y S+ R +F +Y SLDEAYLD+T ++
Sbjct: 59 MSSVVAKKKCPQIIFVKPRFHRYKEVSEQIRTIFFEYTDLVEPLSLDEAYLDVTH--NKK 116
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S IA+E+R ++E GLT SAG++ N+ LAKV SDINKPNGQ + + V++F
Sbjct: 117 GIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTK--VLSF 174
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LPI + GIG VT + + + GI +++ +K + + G+
Sbjct: 175 LENLPIERFYGIGNVTANKMYQL-GIYKGKDLKEKPLEYLVTHFGKMGGHYYDIVRGIHR 233
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ E T+ D + ++L +A+ L ++K+ ++G++LTLK+K
Sbjct: 234 SEVKPHRIAKSVGVEHTYVDDIDTEQDIDKQLMRLAQELYRRIEKKKVKGKSLTLKIKYK 293
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL 266
F + TR+ T Y + E++ + A L
Sbjct: 294 DFSLFTRSKTQNLYFETEEEMYQTARFL 321
>gi|389690299|ref|ZP_10179316.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
gi|388589817|gb|EIM30105.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
Length = 378
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 156/307 (50%), Gaps = 14/307 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ C +LIFV F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 80 MPSVTARRKCADLIFVKPRFDVYKQVSLQIREIFHEYTPLVEPLSLDEAYLDVTENLK-- 137
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI ++A E+R +++E GLT S G++ + LAK+ SD KPNG FV+ + F
Sbjct: 138 GIPYATQVAREIRAKIFQETGLTASVGISYQKFLAKMASDQRKPNGMFVITPEMGP--AF 195
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LPI+K GIG T + GI T ++ + ++ + G+
Sbjct: 196 MEQLPIQKFHGIGPATAAKF-NRLGIFTGLDLKGRSLEFLQERFGKAGSYYYWLAQGVDH 254
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E TFS +TE +A + L I + + + G+RGRT+TLK+K
Sbjct: 255 RPVCPDRIRKSVGAENTFSNDLTELEA-MKTALQPIIDKVWRHCDQTGVRGRTVTLKVKY 313
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSD 295
A F TR+ TL + E + + LL A +P +RL+G+ ++ N D+ S+
Sbjct: 314 ADFHQITRSRTLSGMVEGREALEAASFELLSALVPFPKPVRLLGVSLSTLNTDE---ESE 370
Query: 296 PTQKTLT 302
P Q +L
Sbjct: 371 PPQLSLA 377
>gi|390990143|ref|ZP_10260433.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555108|emb|CCF67408.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 359
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 154/293 (52%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+A N+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQLIRTQIREETQLTASAGIASNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|416110629|ref|ZP_11592173.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
gi|315023043|gb|EFT36056.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
Length = 348
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 146/268 (54%), Gaps = 7/268 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A+K CP++IFV F +Y S+ R +F +Y SLDEAYLD+T ++
Sbjct: 47 MSSVVAKKKCPQIIFVKPRFHRYKEVSEQIRTIFFEYTDLVEPLSLDEAYLDVTH--NKK 104
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S IA+E+R ++E GLT SAG++ N+ LAKV SDINKPNGQ + + V++F
Sbjct: 105 GIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTK--VLSF 162
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LPI + GIG VT + + + GI +++ +K + + G+
Sbjct: 163 LENLPIERFYGIGNVTANKMYQL-GIYKGKDLKEKPLEYLVTHFGKMGGHYYDIVRGIHR 221
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ E T+ D + ++L +A+ L ++K+ ++G++LTLK+K
Sbjct: 222 SEVKPHRIAKSVGVEHTYVDDIDTEQDIDKQLMRLAQELYRRIEKKKVKGKSLTLKIKYK 281
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVL 266
F + TR+ T Y + E++ + A L
Sbjct: 282 DFSLFTRSKTQNLYFETEEEMYQTARFL 309
>gi|256822627|ref|YP_003146590.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069]
gi|256796166|gb|ACV26822.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069]
Length = 369
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 119/217 (54%), Gaps = 6/217 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+LCP LI VP +F KY + S + R +F +Y SLDEAYLD+T+ C E
Sbjct: 67 MPSAYARRLCPGLIIVPPNFDKYRHDSKVIRDIFAQYTDLIEPLSLDEAYLDVTD-CTEY 125
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ +R ++E+ LT SAGVAPN+ LAK+ SD NKPNGQFVL D V F+
Sbjct: 126 KGSATYIAQAIRYQIFEKLQLTASAGVAPNKFLAKIASDWNKPNGQFVLTPDE--VEGFV 183
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LP+ KI G+GK T + + GI TC+E+ + L + S + G+ +
Sbjct: 184 ERLPVNKIHGVGKKTAEKFQRM-GIETCKELREVDLLTLSKTFGSFGQRLYELSRGIDNR 242
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 217
RKS+S E T+ +D L L E+ +L
Sbjct: 243 KVITHYPRKSLSVENTYD--QDLVTLEECLEELPHLL 277
>gi|398353762|ref|YP_006399226.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|390129088|gb|AFL52469.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 374
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 155/294 (52%), Gaps = 17/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S+ R++F +Y P SLDEAYLD+TE +
Sbjct: 76 MPSVTAKRKCPDLIFVIPRFDVYRAVSEQIRQIFAEYTPLIEPLSLDEAYLDVTENLKGM 135
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ +IAEE+R + GLT SAGV+ N+ LAK+ SD KP+G FV+ P + A F
Sbjct: 136 EIA-TDIAEEIRAKIKATTGLTASAGVSYNKFLAKMASDQRKPDGLFVITPRNGPA---F 191
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T ++ + GI T ++ + + + +F + G+
Sbjct: 192 VEALPVKKFHGVGPATAERMKRL-GIETGLDLKTRSLVFLQEHFGKSGAYFYGIARGIDQ 250
Query: 180 TNTPQARFRKSISSERTFSVTEDKALL-----YRKLAEIAEMLSADMQKEGLRGRTLTLK 234
R RKS+ +E TF+ ED LL ++L + E + + + RT+T+K
Sbjct: 251 REVKPDRVRKSVGAEDTFA--ED--LLEFEPASKELVPLVEKVWRYCEANAISARTVTVK 306
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+K + F TR+ TL ++ +I + A LL P S+RL+G+ ++ +
Sbjct: 307 IKYSDFTQATRSRTLPVPVTGPAEIAEIARALLSMVYPFRRSIRLLGVTLSSLD 360
>gi|433608670|ref|YP_007041039.1| DNA polymerase IV [Saccharothrix espanaensis DSM 44229]
gi|407886523|emb|CCH34166.1| DNA polymerase IV [Saccharothrix espanaensis DSM 44229]
Length = 427
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 156/290 (53%), Gaps = 6/290 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+L P +FV ++ +Y S +F P SLDEA+LD++ R
Sbjct: 84 MPTAHARRLAPHAVFVTPNYARYQEVSRGVMAIFRDITPLVEPLSLDEAFLDVSGALRRL 143
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ IAE +R V G+TCS GVAP + LAK+ S + KP+G V+P + AV+ F+
Sbjct: 144 RATPGAIAETIRDQVERAEGVTCSVGVAPTKFLAKLASGMCKPDGMMVVP--KAAVLEFL 201
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
LP+ + G+GK T L D G+ T ++ L V + A+ ++ GL
Sbjct: 202 HPLPVSALWGVGKRTAEQL-DRVGLETVADVAATPLPRLRRVLGVALAEHLHALAQGLDD 260
Query: 180 TNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ KSI +E TF V D+ LL R+L ++E + +++ GLRGRT+++K++ A
Sbjct: 261 RPVVPSSREKSIGAEETFEVDHFDRELLRRELLRLSERSAGTLRERGLRGRTVSIKVRFA 320
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNE 287
F TR+ TL+ ++++ K A+ LL ++P ++RLIG+R+ Q E
Sbjct: 321 DFTTITRSKTLRVATDVTQEVYKTAATLLDEQVPPGAVRLIGVRIEQLVE 370
>gi|456357588|dbj|BAM92033.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Agromonas oligotrophica S58]
Length = 357
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 153/298 (51%), Gaps = 23/298 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE
Sbjct: 59 MPSVTAKRQCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTE----- 113
Query: 61 GISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +IA ++R + E L SAG++ N+ LAK+ SD KPNGQ+V+ + A
Sbjct: 114 NLQGIPLARDIALQIRAKIKAETDLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGA- 172
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ LP+ K GIG T + GI+T ++ + ++ + G
Sbjct: 173 -AFVEGLPVGKFHGIGPATTAKF-NALGIHTGLDIRNQTLPFLQQHFGKAGSYYYWISRG 230
Query: 177 LGSTNTPQARFRKSISSERTFS--VTE---DKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
+ R RKS+ +E TFS +TE KA L + ++ A K GRT+
Sbjct: 231 VDDRPVRANRIRKSVGAENTFSTDLTEFEPMKAELLPLIDKVWRHCEATCNK----GRTV 286
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
TLK+K A FE+ TR+ ++ + S +D+ + + LL++E+P+ +RL+G+ ++ E
Sbjct: 287 TLKVKFADFEIMTRSRSVASAVGSRDDLERLSVALLQSEMPLPKPVRLLGVSLSSLQE 344
>gi|333375949|ref|ZP_08467746.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
gi|332969247|gb|EGK08275.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
Length = 363
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 150/291 (51%), Gaps = 15/291 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+ +FVP F Y S +F Y SLDEAYLD+T+ ++
Sbjct: 73 MPVATAKRLCPQAVFVPPHFDLYRQVSQQIHTIFQCYTDLIEPISLDEAYLDVTQNKQQL 132
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
+ ++A+++R + + GLT SAG+APN+ LAK+ SD KPNGQFV+ P++ + F
Sbjct: 133 PYAS-QVAKQIRAEILAQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIQPHE---IEYF 188
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLG 176
+ LP+ K+ G+GK T ++ G T ++ Q A H F + G
Sbjct: 189 LRDLPVGKVWGVGKKTLLKMQQ-HGWQTIGDLRQVSR---AELVHWFGKFGYRLYDLARG 244
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ R R IS+E T S +K + L +++ L MQ++ ++ TLTLKLK
Sbjct: 245 VDERPVQAERERLQISTEMTLSDNLNKQAISMYLDNLSKDLWQQMQRKKMQAYTLTLKLK 304
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQFN 286
+ F+V TR+ T + E L A++ L A +P RLIGL V+
Sbjct: 305 STEFQVFTRSQTYSAAL--PEQGLLQAALQLIARMPDGEFRLIGLGVSHLQ 353
>gi|94989203|ref|YP_597304.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94993090|ref|YP_601189.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|417856180|ref|ZP_12501239.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
gi|189044610|sp|Q1JA16.1|DPO4_STRPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044611|sp|Q1JK63.1|DPO4_STRPC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94542711|gb|ABF32760.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94546598|gb|ABF36645.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|387933135|gb|EIK41248.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
Length = 364
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 166/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY + R++F +Y S+DEAYLD+T + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|429743284|ref|ZP_19276854.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
gi|429165943|gb|EKY07963.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
Length = 360
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 141/259 (54%), Gaps = 26/259 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+LCP+ +FV F Y S +F ++ SLDEAYLD+T +
Sbjct: 58 MPAVTARRLCPQAVFVAPRFPLYRQVSQQIHGIFRRHTDLIEPLSLDEAYLDVTRNKQNL 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+G +IA +R + E GLT SAG+A N+ LAK+ SD NKP+GQF LP + F+
Sbjct: 118 PYAG-DIARLIRADIRSETGLTASAGIAANKFLAKIASDWNKPDGQFSLPPQKSE--AFL 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVG---- 174
++LP+ KI G+GKVT + + G++T ++ +G L A+ F G
Sbjct: 175 ATLPLGKIPGVGKVTLQKMHRL-GLSTAGDLRRFSRGEL---------ANLFGKWGYRLY 224
Query: 175 -LGLGSTNTPQA--RFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 229
L G+ N P R R IS+E T + + ALL L ++AE L A +++ R R
Sbjct: 225 DLARGTDNRPVKPDRERLQISTETTLARDLPLSAALLC--LPQLAEELWAQAERKKCRAR 282
Query: 230 TLTLKLKTASFEVRTRAVT 248
++TLKLKTASF + TR++T
Sbjct: 283 SVTLKLKTASFRILTRSLT 301
>gi|395764365|ref|ZP_10445034.1| DNA-damage-inducible protein p [Janthinobacterium lividum PAMC
25724]
Length = 372
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 152/304 (50%), Gaps = 17/304 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KL P+ I +P DF Y YS ++ + P +DE Y+D++E G
Sbjct: 74 AAKLAPDSILLPADFEAYRAYSARFKQAVAELCPIIQNVGIDEIYIDLSEY----GEQAP 129
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 124
+A L+ +V+E GL+CS G+APN+LLAK+CSD+ KP+G +L P D V T + LP
Sbjct: 130 AMAARLKAAVFEATGLSCSVGLAPNKLLAKICSDLEKPDGLTILQPED---VETRVWPLP 186
Query: 125 IRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNT 182
+KI GIG K T + + GI + E+ + ++L F + LG+
Sbjct: 187 AKKINGIGPKATAKL--EALGIVSIGELARADLTMLRTQFGDLYTGWLRQAALGIDDRPV 244
Query: 183 PQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R KS+S E TF V D+A L KL + ++ D+ K+ L GRT+ +KL+
Sbjct: 245 QTSRETKSVSRETTFERDLQVVRDRATLSEKLESLCTRVAGDLDKQSLAGRTVGVKLRFE 304
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPT 297
F TR +TL + + IL+ + L + +RL+G+R++ + V P
Sbjct: 305 DFSTVTRDITLPSATADAAAILRASRDCLRRVPFEKKIRLLGVRISTLCDPAVVTRLVPA 364
Query: 298 QKTL 301
Q L
Sbjct: 365 QAEL 368
>gi|387790872|ref|YP_006255937.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
gi|379653705|gb|AFD06761.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
Length = 366
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 158/293 (53%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP IFV F Y S R++F +Y SLDEAYLD+T E
Sbjct: 64 MPSKKAQQLCPHAIFVRPRFAAYKEVSQKIREIFHRYTDLIEPLSLDEAYLDVTHDKLEI 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTF 119
G S IEIA +++ ++ +E LT SAGV+ N+ +AK+ SDINKP+G F+ P+ + +F
Sbjct: 124 G-SAIEIAMQIKKAIKDELNLTASAGVSVNKFVAKIASDINKPDGLTFIGPS---KIESF 179
Query: 120 ISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 177
+ SL + K GIG+VT ++ ++F +++ ++ LL F+ + G+
Sbjct: 180 MESLAVEKFHGIGRVTAEKMKRMNLFTGADLKKLTEEQLLLHF---GKPGKFYYKIVRGI 236
Query: 178 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R KS+ +E TF D + +L +IA+ ++ +Q+ L+GRTLTLK+K
Sbjct: 237 DDREVQPNRVTKSVGAEDTFPYDLTDLEEMNVELDKIAKTVADRLQRYQLKGRTLTLKIK 296
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNE 287
+ F+ TR + I+ + I + A LL P +RL+G+ ++ FNE
Sbjct: 297 YSDFKQITRNQSFLHEINDLQTIAQTAKELLLKTSPEDKKIRLLGITLSNFNE 349
>gi|329850033|ref|ZP_08264879.1| impB/mucB/samB family protein [Asticcacaulis biprosthecum C19]
gi|328841944|gb|EGF91514.1| impB/mucB/samB family protein [Asticcacaulis biprosthecum C19]
Length = 365
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 161/306 (52%), Gaps = 11/306 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R +F Y P SLDEAYLD+TE +
Sbjct: 64 MPSVTAKRKCPDLIFVKHRFEVYREVSHQIRDIFFDYTPLVEPLSLDEAYLDVTENLKGM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +IAE++R + + LT SAGV+ N+ LAK+ SD NKP+G FV+ + F+
Sbjct: 124 -TSATQIAEDIRARIRDVTQLTASAGVSYNKFLAKIASDQNKPDGLFVIKPSQGP--DFV 180
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+SLP++K G+G T + + G+ T ++ + + ++ +V G+
Sbjct: 181 ASLPVKKFYGVGPATASKM-NRLGLYTGMDIRNQTLAFLQKHFGISGSYYYNVSRGICHR 239
Query: 181 NTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ E TF ED + L + +L I + + ++ +G++GRT+TLK+K
Sbjct: 240 QVKPDRERKSVGGENTF--FEDVSTLDSAWAQLLPILDKVWRHIEGKGIKGRTVTLKVKY 297
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSD 295
A F TR+ T ++ + + + LL+ PV ++RL+G+ ++ +ED+ P D
Sbjct: 298 ADFTTITRSKTFAAAVADRDTMTRIGRELLEGVFPVVKNIRLLGISLSSLSEDEADEPED 357
Query: 296 PTQKTL 301
Q +L
Sbjct: 358 MRQLSL 363
>gi|91978101|ref|YP_570760.1| DNA polymerase IV [Rhodopseudomonas palustris BisB5]
gi|91684557|gb|ABE40859.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris BisB5]
Length = 396
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 156/295 (52%), Gaps = 15/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP L+FV F Y S R++F ++ SLDEAYL +TE +
Sbjct: 98 MPSVTARRQCPGLVFVKPRFEVYKAISQQIREIFAEHTLVIEPLSLDEAYLYVTENLQ-- 155
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GIS +IA +R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + F
Sbjct: 156 GISLARDIALAIRARIKTETGLNASAGISYNKFLAKLASDHRKPNGQYVISPETGP--AF 213
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGL 177
+ +LP+ K GIG T GI T ++ +G L + +H ++ + G+
Sbjct: 214 VEALPVGKFHGIGPATAARFH-ALGIQTGLDI--RGRTLTFLEAHFGKAGAYYYWISRGI 270
Query: 178 GSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKS+ +E TFS +TE A+ +L + + + + G RGRT+TLK+
Sbjct: 271 DERPVRANRIRKSVGAENTFSQDLTEFDAMAA-ELQPLIDKVWRHCETTGNRGRTVTLKV 329
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNED 288
K A FE+ +R+ ++ + ED+ + A LL+A +P+ ++RL+G+ ++ D
Sbjct: 330 KFADFEIMSRSRSVPTAVGGREDLERLAVGLLQAAMPLPKAVRLLGVSLSSLRSD 384
>gi|88705924|ref|ZP_01103633.1| DNA polymerase IV [Congregibacter litoralis KT71]
gi|88699995|gb|EAQ97105.1| DNA polymerase IV [Congregibacter litoralis KT71]
Length = 410
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 160/316 (50%), Gaps = 21/316 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+ CP+L+FV F Y S +F +Y SLDEAYLD+T
Sbjct: 101 MPGVTARRRCPQLLFVKPRFEVYRAVSQQLHGIFARYTHIIEPLSLDEAYLDVTADLAGL 160
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE +R + E LT SAGV+ N+ +AKV SD NKP+G FV+ + A F+
Sbjct: 161 G-SATAIAEAIRGDIRRELRLTASAGVSYNKFIAKVASDQNKPDGVFVVRPEEGA--AFV 217
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
++LP R+ G+G T + + GI T ++ Q L F S A + G
Sbjct: 218 ATLPARRFFGVGPKTAERMSSL-GIQTGADIRAQTLGFLEQHFGKS-AHYLYRASRGEDY 275
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKSI ERT+S ++ D+A L L I +++ + + RGRT+T+K+K
Sbjct: 276 RAVKADRERKSIGGERTYSDDLSTDEA-LRDALEHIIDIVWERIHRNNARGRTVTIKVKY 334
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF---------N 286
A F+ TRA ++ + + E + + LL+A LPV +RL+GL ++
Sbjct: 335 ADFQQITRARSVSPPVDTREAFERLSRGLLEALLPVPKGVRLLGLTLSSLESSQEPAHTG 394
Query: 287 EDKVRAPSDPTQKTLT 302
E V A S P Q++L
Sbjct: 395 ESGV-AESGPVQESLA 409
>gi|359686511|ref|ZP_09256512.1| DNA polymerase IV [Leptospira santarosai str. 2000030832]
Length = 360
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P IFV F Y SD R++F +Y SLDE YLD+T ++
Sbjct: 59 MPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKK 116
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I ++IA+E+R+ +++ LT SAGV ++L+AK+ S+ NKPNG VLP+D V
Sbjct: 117 NIPFAVKIAKEIRSEIFKRTELTASAGVGNSKLIAKLASEKNKPNGLTVVLPDD---VTA 173
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LPI G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 174 FIDPLPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGED 232
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K
Sbjct: 233 EREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKF 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 284
F ++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 293 QDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTKAIRLLGINLSH 348
>gi|15677305|ref|NP_274460.1| DNA polymerase IV [Neisseria meningitidis MC58]
gi|22095639|sp|Q9JYS8.1|DPO4_NEIMB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|7226689|gb|AAF41808.1| DNA-damage-inducible protein P [Neisseria meningitidis MC58]
Length = 318
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 137/247 (55%), Gaps = 12/247 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVT 248
+ TR +T
Sbjct: 295 IITRTLT 301
>gi|325918965|ref|ZP_08181032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas vesicatoria ATCC 35937]
gi|325534810|gb|EGD06739.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas vesicatoria ATCC 35937]
Length = 359
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 159/294 (54%), Gaps = 15/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPALRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + +E LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEIAQLIRTQIRDETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ L + +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 230 ERPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLK 287
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNE 287
T++F + TR+ T ++ +S + + + A L + ELP RL+G+ ++ F++
Sbjct: 288 TSNFRILTRSYTPEQPPASLDALAQIALALTRRVELPDETRYRLVGVGLSGFSD 341
>gi|407451872|ref|YP_006723597.1| nucleotidyltransferase/DNA polymerase [Riemerella anatipestifer
RA-CH-1]
gi|403312856|gb|AFR35697.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-1]
Length = 360
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 147/269 (54%), Gaps = 7/269 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A+K CP++IFV F +Y S+ R +F +Y SLDEAYLD+T ++
Sbjct: 59 MSSVVAKKKCPQIIFVKPRFHRYKEISEQIRAIFFEYTDLVEPLSLDEAYLDVTH--NKK 116
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI S IA+E+R ++E GLT SAG++ N+ LAKV SDINKPNGQ + + V++F
Sbjct: 117 GIDSANLIAKEIRRKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTK--VLSF 174
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LPI + GIG VT + + + GI +++ +K + + G+
Sbjct: 175 LENLPIERFYGIGNVTANKMYQL-GIYKGKDLKEKSLEYLITHFGKMGRHYYDIVRGIHR 233
Query: 180 TNTPQARFRKSISSERTFSVTED-KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ R KS+ E T++ D + + ++L +A+ L +K+ ++G++LTLK+K
Sbjct: 234 SEVKPHRIAKSVGVEHTYADDIDTEKDIDQQLIRLAQELYERAEKKQVKGKSLTLKIKYK 293
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL 267
F + TR+ T Y + E++ + A L
Sbjct: 294 DFSLFTRSKTQDLYFETEEEMYQIARFLW 322
>gi|302875636|ref|YP_003844269.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
gi|307688072|ref|ZP_07630518.1| DNA polymerase IV [Clostridium cellulovorans 743B]
gi|302578493|gb|ADL52505.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
Length = 353
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 157/301 (52%), Gaps = 19/301 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +IA+K CP IF+P + +Y S K+FC P S+DEAYLD++ + +
Sbjct: 58 MPVYIAKKKCPHGIFLPVRYWRYKEISKEIFKIFCSLTPYVEPLSIDEAYLDLSYINED- 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
IE A+ ++ V +E GL S G++ N+ LAK+ SD NKPNG V+ + + + F
Sbjct: 117 ---PIECAKYIKQKVQKEIGLNLSIGISYNKFLAKLASDWNKPNGLKVITEEMIPELLF- 172
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
L I ++ GIG + L D+ G+ E++ LL + + + + G +
Sbjct: 173 -PLEISRVYGIGNKSVKRLNDI-GVFNIEQLYNLPKELLRELMGKMGIEVYERIR-GYDN 229
Query: 180 TNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
R RKSI E T + + E K L+Y E A+ +S ++ + + + +T+K
Sbjct: 230 REVVVERERKSIGRETTLAKDVEQIEELKELIY----EFAKSISKTLKAKNISAKNVTIK 285
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAP 293
+KTA F+ T++ TL YI EDI K A ++L ++ +RL+G+ ++ F EDK+
Sbjct: 286 IKTADFKSHTKSKTLNHYIVGEEDIFKEAYNILENLDIKDKIRLVGVSMSSFKEDKLEQI 345
Query: 294 S 294
S
Sbjct: 346 S 346
>gi|399924340|ref|ZP_10781698.1| DNA polymerase IV [Peptoniphilus rhinitidis 1-13]
Length = 348
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 151/296 (51%), Gaps = 11/296 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++A+ LC LI +P +Y S V Y S+DE+YLDI + +
Sbjct: 56 MPMYMAKNLCDHLIIMPMRRDRYLEKSREVFDVLKTYTKVIEKVSIDESYLDIEGLGYDE 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I E++ VY GL S G++ N+ LAK+ SD NKP G ++ + + F
Sbjct: 116 NI-----VYEIQKDVYNRTGLNVSIGMSYNKFLAKLASDWNKPKGIMIIKKRDIPEILF- 169
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
L IRK+ GIGK +E LR++ GINT EE+ L ++F S + + + G+ +
Sbjct: 170 -PLDIRKVHGIGKKSEKKLRNI-GINTVEELYSLSYDFLVSMFKKSGEEIYNRIR-GIDN 226
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
RKS+ +E TF VT + L L E + +S D+ + + G TLTLK+K
Sbjct: 227 RKVTPNTVRKSLGTETTFEVTSKRDELIGYLKEFSHEISEDLIVKEISGYTLTLKMKNED 286
Query: 240 FEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 294
F+V+TR+ T +K I + +DI K + + +A LRLIG+ ++ + +R S
Sbjct: 287 FKVKTRSKTYEKAIYAEDDIYKKSLEIFDEAYGGEKLRLIGITISNLADLSIRQLS 342
>gi|299144467|ref|ZP_07037547.1| DNA polymerase IV [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518952|gb|EFI42691.1| DNA polymerase IV [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 347
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 149/287 (51%), Gaps = 10/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP F+A+KLCP LI P +Y SD K+ KY S+DE Y+DI+E +
Sbjct: 57 MPLFMAKKLCPHLIVAPMRRNRYIEKSDEVFKILSKYSDIIEKVSIDECYMDISENKNQ- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++I ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ + + +
Sbjct: 116 ---PVDIVFSIKKKVKNETGLTVSVGLSYNKFLAKMASDWNKPDGMMIIS--KSEIPQLL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
S + I KI G+G ++ LR++ GIN EE+L+ L +F + + + G+ +
Sbjct: 171 SKIDIGKIHGLGNKSQEKLRNL-GINKIEELLELDREFLFELFGKMGYEVYDRIR-GIDN 228
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ ERTFS T + L L + L+ D++ L +T+TLK+KT +
Sbjct: 229 RAVTPNRERKSLGIERTFSDTNNVKELISYLDRYSFELAEDLKNRNLGFKTITLKIKTDN 288
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQF 285
F+V T + T + IS EDI K+ + + LRLIG+ +
Sbjct: 289 FKVSTYSKTYSRAISEYEDIFKNVKDIFEYNYKNQKLRLIGISASNL 335
>gi|349687672|ref|ZP_08898814.1| DNA polymerase IV [Gluconacetobacter oboediens 174Bp2]
Length = 361
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 149/299 (49%), Gaps = 12/299 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP+L+FVP F Y S +F ++ P SLDEAYLD+T +
Sbjct: 62 MPSVIALRKCPDLVFVPPRFDVYRAVSAQIHDIFSRFTPLIQPLSLDEAYLDVTHPLQPY 121
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+++R + E GLT SAG++ N+ LAK+ SD KP+GQFV+ RM F+
Sbjct: 122 P-SATAIAQDIRDRIRAETGLTASAGISYNKFLAKLASDYRKPDGQFVI-TPRMG-PDFV 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLG 178
++LP+ + GIG T + GI T ++ Q+ L + H ADF+ + G+
Sbjct: 179 ATLPVEQFHGIGPATAARMH-ALGIRTGLDLRQQP--LSRLLRHFGKAADFYYGIARGID 235
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R R+SI +ERTF V D A + +++ + L G T+T+K+K
Sbjct: 236 ERPVEVNRPRRSIGAERTFEVDIHDWAAALDVIMDLSTRVWNRCTARSLTGITVTIKVKY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFN-EDKVRAP 293
F R T + + + D++ A LL P +RL+G+ V+ D + AP
Sbjct: 296 NDFRQIVRGRTALEPVRDATDLVDRAQGLLAPCFPPPRGIRLLGVTVSGLRARDALAAP 354
>gi|332530928|ref|ZP_08406852.1| DNA-directed DNA polymerase [Hylemonella gracilis ATCC 19624]
gi|332039616|gb|EGI76018.1| DNA-directed DNA polymerase [Hylemonella gracilis ATCC 19624]
Length = 404
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 146/285 (51%), Gaps = 13/285 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF +Y YS ++V + P +DE Y+D TEV + SG
Sbjct: 119 AAKLCPQAILLPVDFDEYRRYSRRFKEVILEIAPVMEDRGVDEVYIDFTEVPGGQRESGR 178
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+A ++ S++E GLTCS GVAPN+LLAK+ S+ NKP G V +D + I LP
Sbjct: 179 TLARLIQKSIFEATGLTCSIGVAPNKLLAKMASEFNKPKGISIVQVSD---LQEKIWPLP 235
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEML--QKGSLLCAVFSHSTADFFLSVGLGLGS--- 179
RKI GIG T+ L+ I+T E+ KG L+ F S + G
Sbjct: 236 CRKINGIGPKTDEKLQ-ALSISTIGELAARSKGELV-ERFGRSYGAWLHEAAWGRDERPV 293
Query: 180 -TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
T + + + ER DKA L + E ++AD+Q++G GRT+ +KL+ A
Sbjct: 294 VTESEPVSVSRETTFERDLHAVRDKAELAAIFTSLCERVAADLQRKGYEGRTIGVKLRYA 353
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 282
F+ TR TL + + ++ I A + LK +L RL+G+RV
Sbjct: 354 DFKSVTRDQTLDFHTADAQAIRHAAGLCLKRVDLQRRFRLLGVRV 398
>gi|407473475|ref|YP_006787875.1| DNA polymerase IV [Clostridium acidurici 9a]
gi|407049983|gb|AFS78028.1| DNA polymerase IV [Clostridium acidurici 9a]
Length = 339
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 163/291 (56%), Gaps = 17/291 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF-CKYDPNFM--AASLDEAYLDITEVC 57
MPGFIAR+ CP F+P +Y +++R+VF Y+ + S+DEAYLD++ +
Sbjct: 48 MPGFIARQRCPNGQFLPVRMERY---KEVSRQVFGILYEIADLIEPVSIDEAYLDVSNIE 104
Query: 58 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 117
+ + +EI EE++ V +E GLT S G++ N+ LAK+ SD NKPNG ++ + V
Sbjct: 105 K----NPLEIVEEIKYKVLKETGLTMSRGISYNKFLAKLASDWNKPNGIKIITKE--MVP 158
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLG 176
+ L + + GIGK + L ++ GI T +E+++ L F S + + + G
Sbjct: 159 DILLPLSVSSVHGIGKKSSQKLNNI-GIYTIKELMRLPEDFLVDFFGKSGREIYNRIR-G 216
Query: 177 LGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ + + RKSI ERTF+ T++K +L L + + L ++ + ++ +T+TLK+
Sbjct: 217 IDNRTVNISSERKSIGVERTFTNHTKNKEILQEYLYKFSLELELSLKSKEMQAKTITLKI 276
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF 285
K +F +TR +TL +I+SS++I + LLK + +RLIGL V+
Sbjct: 277 KDTNFRTQTRGITLSNHITSSKEIFNISKNLLKEVSISADIRLIGLSVSNL 327
>gi|257455879|ref|ZP_05621098.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
gi|257446727|gb|EEV21751.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
Length = 351
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 155/291 (53%), Gaps = 24/291 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M + AR+LCP+ IFV F Y S+ R + +Y SLDEAYLD+T+ E+
Sbjct: 57 MSCYRARQLCPQAIFVKPRFEVYREVSEQIRAIMHQYTLLVEPLSLDEAYLDVTDSPYEK 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA +R + + LT SAGV+ N++LAK+ SD+NKPNG V+ ++ + FI
Sbjct: 117 N-SATLIANRIRQQILRQTQLTASAGVSYNKMLAKIASDLNKPNGIAVITPEQG--LDFI 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
++LP++K GIGK T +L D+ GI T ++ + + DFF + G+ +
Sbjct: 174 ANLPVKKFHGIGKATVKMLHDM-GIFTGLDLRNTPADVLKQHFGKRGDFFHQIAHGIDNR 232
Query: 181 NTPQARFRKSISSERTF--SVTEDK---ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R KS+ SE TF + +DK A LYR+ ++ + D+QK+ + RT+T+K+
Sbjct: 233 EVKAERNHKSVGSETTFVHNTMDDKVIVAALYRENSQAFK----DLQKKQRKARTITIKI 288
Query: 236 KTASFEVRTRAVTLQKYISSSED------ILKHASVLLKAELPVSLRLIGL 280
K + F V TR+ ++ + D L H + L LPV RL+G+
Sbjct: 289 KYSDFSVITRSHSISSHFEQESDAHYWIQWLYHHTPKL---LPV--RLVGV 334
>gi|340780896|ref|YP_004747503.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340555049|gb|AEK56803.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 7/283 (2%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
AR LCP+ IFV Y S + Y SLDEA+LD+T + G +
Sbjct: 72 ARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTD-GTLAV 130
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+G FV+P +R + F++ LP+
Sbjct: 131 EIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERG--LAFLAPLPV 188
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
K+ G+G T L G+ T ++ + +F V + +
Sbjct: 189 GKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPS 247
Query: 186 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 244
R RKS+ +ERTFS ED++++ L E+A ++A +Q L G T+ +K + F T
Sbjct: 248 RQRKSVGTERTFSKNLEDRSVMRTTLQEMAAQVAARLQALNLAGHTVNIKARFPDFTTVT 307
Query: 245 RAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQF 285
RA T + I S + I LL +P S+RL+G+ V+
Sbjct: 308 RAYTATEGIGSVDAIAALLPELLDRAVPKSASVRLLGITVSSL 350
>gi|414075047|ref|YP_007000264.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris UC509.9]
gi|413974967|gb|AFW92431.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris UC509.9]
Length = 346
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 159/295 (53%), Gaps = 22/295 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYLD+TE + S I
Sbjct: 57 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYLDVTE-NKIGAQSAI 115
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P++ + F++ LP
Sbjct: 116 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPDE---ALEFLAKLP 172
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L G T ++ + + L F + F G+ ++
Sbjct: 173 VEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAEKFGIYGWELFQKAN-GIHNSKVK 230
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ ERT+ LLY +L +I++ +S +++ L+G + LKL+
Sbjct: 231 NHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKRHQLKGNIIILKLRY 285
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDK 289
+ F T+ ++ + + S EDI + A + + + + +RL+G+ V+ F K
Sbjct: 286 SDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDESLGVRLLGVTVSGFGVQK 340
>gi|406040038|ref|ZP_11047393.1| DNA polymerase IV [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 351
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 154/286 (53%), Gaps = 13/286 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S +F +Y SLDEAYLD+TE + S
Sbjct: 61 ARKLCPDVVVIEPNFEKYRAVSAQIHHIFQQYTSMIEPLSLDEAYLDVTENFKNLP-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+IA ++R +++ GLT SAGVAPN+ LAK+ SD NKP+G V+ + V FI LP+
Sbjct: 120 DIAIQIRQEIFKVTGLTASAGVAPNKFLAKIASDWNKPDGLCVIKPSQ--VQAFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
+KI G+G+VT+ L+ + + T ++ + + ++L F FL G+
Sbjct: 178 KKIPGVGRVTQEKLQQL-QLETLGDLQRIEENVLIHHFGKYGKQLFLYAQ-GIDHRTVQA 235
Query: 185 ARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R R+ IS E TF + ++ L Y +AE + ++Q + L R +++KLK +F++
Sbjct: 236 ERERQQISKETTFDGDLYLNECLAY--WPPLAEKVWNNLQHKQLTARGVSIKLKLKNFQI 293
Query: 243 RTRAVTLQKYISSSEDILKHASVLL-KAELPVSL--RLIGLRVTQF 285
+ + ++ I S ++L VLL + LP RLIGL V Q
Sbjct: 294 YQHSKSFKRPIQSFAELLDILQVLLYEMHLPAEFQYRLIGLGVYQL 339
>gi|116512975|ref|YP_811882.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris SK11]
gi|123025143|sp|Q02WA3.1|DPO4_LACLS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116108629|gb|ABJ73769.1| Nucleotidyltransferase/DNA polymerase for DNA repair [Lactococcus
lactis subsp. cremoris SK11]
Length = 364
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 159/295 (53%), Gaps = 22/295 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYLD+TE + S I
Sbjct: 75 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYLDVTE-NKIGAQSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P++ + F++ LP
Sbjct: 134 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPDE---ALEFLAKLP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L G T ++ + + L F + F G+ ++
Sbjct: 191 VEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAEKFGIYGWELFQKAN-GIHNSKVK 248
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ ERT+ LLY +L +I++ +S +++ L+G + LKL+
Sbjct: 249 NHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKRHQLKGNIIILKLRY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDK 289
+ F T+ ++ + + S EDI + A + + + + +RL+G+ V+ F K
Sbjct: 304 SDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDESLGVRLLGVTVSGFGVQK 358
>gi|401888778|gb|EJT52727.1| hypothetical protein A1Q1_02062 [Trichosporon asahii var. asahii
CBS 2479]
Length = 618
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 143/284 (50%), Gaps = 50/284 (17%)
Query: 16 VPTDFTKYTYYSDLTRKVFCK------------YDPNFMAASLDEAYLDITEVCRERGIS 63
P F YT S R+V K YD N M A LDE IT ++ ++
Sbjct: 226 TPLHFDLYTEASRKIREVLLKVSYAILHRADIQYDANLMMAGLDEG---ITGYIQQHDVT 282
Query: 64 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 123
+E E+LR V GLT SAG+APNR+LAK PNG F L +R ++ F+ L
Sbjct: 283 ALEAVEKLRAEVEAATGLTISAGIAPNRMLAK-------PNGVFELEFNRATIVKFMHDL 335
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
P+RKI G G+VTE L + FG+ L +H +G+ S
Sbjct: 336 PVRKIPGFGRVTERCL-EGFGVE-----------LTGSKAH--------LGIADNSVQPY 375
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
+ RKS+ ERTF + + +LA IAE L D+++ G+T+T+K K ++E +
Sbjct: 376 KREERKSVGVERTFRDKWEDEDILAELANIAEELEDDLKRLQYSGKTVTVKYKLHTYESK 435
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
+RA +++KYI++ +DIL ELPV +RL+G+R++ +
Sbjct: 436 SRAQSVKKYINTKDDIL--------PELPVRIRLLGIRLSNLKD 471
>gi|419802488|ref|ZP_14327674.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|419845026|ref|ZP_14368313.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
gi|385190048|gb|EIF37498.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|386416952|gb|EIJ31444.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
Length = 374
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 156/294 (53%), Gaps = 22/294 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP LI VP + Y S ++F +Y SLDEAYLD+T+ C +
Sbjct: 79 MPTAQAIKKCPNLILVPVNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVTD-CTQC 137
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P++ V F
Sbjct: 138 SGSATWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHE---VEQF 194
Query: 120 ISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLG 176
+ +LP++KI G+GKVT E +L+ G+ TCE+ +QK S+L +F + G
Sbjct: 195 VKTLPLKKIPGVGKVTSERLLK--MGLETCED-VQKLDQSILLNIFGKMGKRIW-DFSHG 250
Query: 177 LGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGLRG-RT 230
+ R RKSI ERT S + + ALL AE+ + L R
Sbjct: 251 IDDREIQAYRERKSIGVERTLSENIRHLEQGIALLDNLYAELIRRIERSAPNVPLTVFRK 310
Query: 231 LTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 283
+ +KLK F+V T T L + S + +L+ + + S+RL+GL VT
Sbjct: 311 IGVKLKFEDFQVTTLEKTGLPLSLKSFQQLLEQ---IWQRSQGKSIRLVGLHVT 361
>gi|357060135|ref|ZP_09120909.1| DNA polymerase IV [Alloprevotella rava F0323]
gi|355377025|gb|EHG24265.1| DNA polymerase IV [Alloprevotella rava F0323]
Length = 371
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 156/294 (53%), Gaps = 12/294 (4%)
Query: 5 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 63
+A++LCP LI VP F KY + ++F Y S+DEA+LD+TE ++G+
Sbjct: 63 VAKRLCPSLIIVPCHFEKYRAVNRQISEIFHDYTDQVEFLSVDEAFLDVTE--NKKGVEL 120
Query: 64 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 123
++IA E++ + EE LT SAGV+ +LLAK+ SD KP+G + D+ + FI+ L
Sbjct: 121 AVDIAREIKNRIQEELQLTASAGVSYCKLLAKIASDYRKPDGLCTIHPDK--ALRFIAHL 178
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTN 181
P+ K+ G+G T L + GI T E+ L++ SL L F F + G+
Sbjct: 179 PVTKLWGVGPKTAERLHQM-GIYTGEQ-LREYSLHSLTQAFG-KMGQVFYNFARGIDERP 235
Query: 182 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
R KS+ E TF + +A + +L + L ++K GRTLTLK+K A F
Sbjct: 236 VVTTREAKSVGCEHTFEKDLQTQAPVIVELYHVTLKLVERIKKHKFEGRTLTLKVKYADF 295
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKVRAP 293
TR++T Q+ + + + IL A LL K + +RL+GL V+ E+ V+ P
Sbjct: 296 TQITRSLTQQELLRTKKQILPLAKQLLAKTDTSRPIRLLGLSVSSPKEENVKKP 349
>gi|429770091|ref|ZP_19302173.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
gi|429185547|gb|EKY26522.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
Length = 359
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 153/293 (52%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+LIF P F Y S VF Y SLDEAYLD+T R
Sbjct: 61 MPSSTALRRCPQLIFTPPRFEIYRAVSAQIHAVFADYTDLIEPLSLDEAYLDVT--ANRR 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + AEE+R + E GLT SAG++ N+ LAK+ SD KPNGQFV+P R F
Sbjct: 119 GLPTASATAEEIRDRILEATGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGRGE--AF 176
Query: 120 ISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ LP+++ G+G VT E + R GI T ++ + + ++ ++ G
Sbjct: 177 VQDLPVKRFHGVGPVTAEKMTR--LGIETGADLRHQSLAFLQHHFGKSGPWYYAIARGED 234
Query: 179 STNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS SE TF+ + E +A+ + E+A+ + A +K G GRT+T+K+K
Sbjct: 235 HRPVNPDRERKSSGSETTFARDLVEPEAI-EAGVEEMADEVWAWCEKAGSLGRTVTVKVK 293
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNE 287
A F+ TR+ + + ++S + + + +L ++ P + +RL+G+ ++ +
Sbjct: 294 WADFQQSTRSRSFAEPVASKARLREISRLLARSLYPPTKGVRLVGVTISNLEK 346
>gi|392987494|ref|YP_006486087.1| DNA-damage-inducible protein P [Enterococcus hirae ATCC 9790]
gi|392334914|gb|AFM69196.1| DNA-damage-inducible protein P [Enterococcus hirae ATCC 9790]
Length = 315
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 154/287 (53%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ IF P D KY+ S + R++F +Y S+DEAYLD+T R S I
Sbjct: 23 AYELCPQAIFKPGDHQKYSEISQIVREIFYRYTDIVEPVSIDEAYLDVTNNKRNCK-SAI 81
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA ++ ++EE LTCSAGV+ N+ LAK+ SD KP G V P D +TF+ +LP
Sbjct: 82 KIARLIQRDIWEEVKLTCSAGVSYNKFLAKLASDFQKPKGITIVAPQD---ALTFLKALP 138
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
I K G+GK T + ++ GI T E++ +L F + V G+
Sbjct: 139 IDKFHGVGKKTVPKMHEL-GIFTGEDLYNCTEMMLIQQFGKMGYSLYRKVR-GVHDAPVN 196
Query: 184 QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++ +
Sbjct: 197 VTRERKSVGKEHTYGQPLQTEEAVL-AQLQQLAEKVEESLKRVQKHGKTVVLKVRYTDYT 255
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
T+ VTL +YI E + AS++ + L + +RL+G+ +T +
Sbjct: 256 TVTKRVTLPEYIYKKEALFYQASLIWEEILGIEQGIRLLGITLTNLD 302
>gi|294055037|ref|YP_003548695.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
gi|293614370|gb|ADE54525.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
Length = 350
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 158/305 (51%), Gaps = 33/305 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP F AR+LCP+LI +P F Y S R +F +Y SLDEAYLD++++ ++R
Sbjct: 59 MPVFQARQLCPQLIILPVRFELYRTISKQVRAIFHRYTDLVEPLSLDEAYLDVSQL-KQR 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G EIA E+R+++ E GLT SAG+APN+L+AK+ SD NKPNGQ ++ + V F+
Sbjct: 118 GA---EIATEIRSTIERETGLTASAGIAPNKLIAKIASDWNKPNGQCIVGPSK--VEAFM 172
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGL 177
LPIRKI GIG + ++ GI TC ++ + L +H F + G+
Sbjct: 173 RPLPIRKIWGIGPKSAQRFAEL-GIETCGQLQE---LDQTQLTHRFGSFGFELYKLCRGI 228
Query: 178 GSTNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
R RKS+S E TF ++ ++ L R+ E+ + L A + L
Sbjct: 229 DERPVEPNRIRKSLSCEHTFQQNLETLRACESQLERQFDELLQDLRASAPDRQI--TKLV 286
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE----LPVSLRLIGLRVTQFNED 288
+KLK A F R T +K +S D+ ++ ++L +A PV L IG+R D
Sbjct: 287 IKLKFADF----RQTTAEK-PASQPDLQQYTALLHEAWGRSGQPVRLLGIGVRFA----D 337
Query: 289 KVRAP 293
R P
Sbjct: 338 AHRGP 342
>gi|254876929|ref|ZP_05249639.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842950|gb|EET21364.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 350
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 157/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R+VF + SLDEAYLD+T+V +
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASSIIREVFYTFTDKVEPLSLDEAYLDVTDVAAYK 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V F+
Sbjct: 120 N-SATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VNNFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
+LP++K+ G+GKV++ L+ + + TC + LQ+ SL V F + + + G+
Sbjct: 177 KNLPVKKLFGVGKVSQEKLKSM-NVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPNLYDKLTSRMTEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + + +LK+ + L + +RLIG+ V
Sbjct: 292 FTDTKFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHIRLIGIGV 336
>gi|375088530|ref|ZP_09734868.1| hypothetical protein HMPREF9703_00950 [Dolosigranulum pigrum ATCC
51524]
gi|374561495|gb|EHR32834.1| hypothetical protein HMPREF9703_00950 [Dolosigranulum pigrum ATCC
51524]
Length = 395
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 152/287 (52%), Gaps = 11/287 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP IF+P +FT Y S +F +Y SLDEAYLD+T ++ S
Sbjct: 99 AYELCPRAIFIPPNFTLYRQISAQIHDIFYQYTDLVQPLSLDEAYLDVTN-NKKSMPSAT 157
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IA++L+ +YE+ LTCSAGV+ N+ +AK+ SD KP+G V+ + F+ LPI
Sbjct: 158 MIAQQLQKIIYEQTQLTCSAGVSYNKFIAKIASDYQKPSGLTVVTP--ASAHHFLMQLPI 215
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
K G+G+ T + I T E++ Q+ L F + V G+ ++
Sbjct: 216 EKFFGVGEKTLEKMH-ALNIYTGEDLYQQTLDDLMHRFGKMGYSLYHKVR-GIDNSPVVA 273
Query: 185 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R RKS+ E T++ +T D ++ ++L +++ A ++K L G+T+ LK + ++F
Sbjct: 274 DRTRKSVGKESTYAHVITHDDEVI-QQLRRLSQQTFASLEKHRLHGKTVVLKYRYSNFST 332
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
T+ TL YI S+ED+ AS L E V +RL+G+ VT N+
Sbjct: 333 HTKRRTLFNYIHSAEDLFNIASDLWYEEGDVEQGVRLLGVTVTNLNK 379
>gi|94995023|ref|YP_603121.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
gi|189044613|sp|Q1J509.1|DPO4_STRPF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94548531|gb|ABF38577.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
Length = 364
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 165/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAY+D+T + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYVDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ L K+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDMWKEVGLTCSAGVSYNKFLGKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>gi|421113191|ref|ZP_15573639.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
gi|410801366|gb|EKS07536.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
Length = 360
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P IFV F Y SD R++F +Y SLDE YLD+T ++
Sbjct: 59 MPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKK 116
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V
Sbjct: 117 NIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTA 173
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LP+ G+GKVT ++++ GI+T +++ K T ++ + G
Sbjct: 174 FIDPLPVGSFHGVGKVTAQKMKEL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGED 232
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K
Sbjct: 233 EREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKF 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 284
F ++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 293 QDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLGINLSH 348
>gi|410450101|ref|ZP_11304144.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
gi|410016110|gb|EKO78199.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
Length = 360
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 157/296 (53%), Gaps = 18/296 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P IFV F Y SD R++F +Y SLDE YLD+T ++
Sbjct: 59 MPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKK 116
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V
Sbjct: 117 NIPFAVKIAKEIRSEIFKRIELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTA 173
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LPI G+GKVT ++++ GI+T +++ K T ++ + G
Sbjct: 174 FIDPLPIGSFHGVGKVTAQKMKEL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGED 232
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K
Sbjct: 233 EREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKF 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 284
F ++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 293 QDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLGINLSH 348
>gi|402756923|ref|ZP_10859179.1| DNA polymerase IV [Acinetobacter sp. NCTC 7422]
Length = 355
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 149/287 (51%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP+++ + +F KY S ++F +Y SLDEAYLD+TE + S
Sbjct: 65 ARKLCPQVVVIEPNFEKYREVSAQIHQIFQQYTTLIEPLSLDEAYLDVTENLKNIP-SAT 123
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPNG FV+ + V++FI L +
Sbjct: 124 EVAAQIRADIFAVTGLTASAGVAPNKFLAKIASDWNKPNGLFVIKPHQ--VLSFIQDLAL 181
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 182 NKIPGVGKVTQERLQQL-NLHTLGD-LQKIEENVLIHHFGKYGKQLYL-YAQGIDHRPVK 238
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF A + E + + K+ L R +T+KLK +F+V
Sbjct: 239 AERERQQISKEITFDEDYTFAQCSHAWQPLTEQVWRSLNKKQLTARGVTIKLKLKNFQVL 298
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQFN 286
+ + ++ + S +D L + L E+ + RL+G+ V Q
Sbjct: 299 QHSKSFKQALQSQQD-LGQVILQLLDEMHIDPESQFRLVGVGVYQLQ 344
>gi|254491040|ref|ZP_05104221.1| ImpB/MucB/SamB family [Methylophaga thiooxidans DMS010]
gi|224463553|gb|EEF79821.1| ImpB/MucB/SamB family [Methylophaga thiooxydans DMS010]
Length = 362
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 154/293 (52%), Gaps = 16/293 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFV F Y S R +F +Y SLDEAYLD+T
Sbjct: 60 MPCSRAYRLCPQAIFVKPRFDAYREVSQQIRDIFWRYASEVEPLSLDEAYLDVTYTEDFN 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV-LPNDRMAVMTF 119
G S IA+ ++ + +E L SAGV+ N+ LAK+ SD++KPNG +V LP A F
Sbjct: 120 G-SATLIAKAIKQDILQETNLYASAGVSYNKFLAKIASDMDKPNGLYVILPQQGEA---F 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+S L I K GIG TE ++ + GI T ++ QK + ++ ++ +
Sbjct: 176 VSELAIGKFHGIGPATEAKMKQL-GIATGYDLRQKSEAELTERFGKSGQYYFNIARAIDE 234
Query: 180 TNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
R RKS+ E TF SV E L KL+++A+++ + K+ L+ RT+T+K
Sbjct: 235 RPVRSTRIRKSLGKETTFSHDILSVPE----LTAKLSDLADIVLESLAKQNLKARTVTVK 290
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRVTQFN 286
+K + F+ TRA TL+ I+S++ +L + E ++RL+GL ++ F+
Sbjct: 291 VKYSDFQQVTRAQTLEHSIASADLNEWIPKLLARTEAGQKAVRLVGLSLSGFD 343
>gi|456877106|gb|EMF92144.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. ST188]
Length = 360
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P IFV F Y SD R++F +Y SLDE YLD+T ++
Sbjct: 59 MPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKK 116
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V
Sbjct: 117 NIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTA 173
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LPI G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 174 FIDPLPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGED 232
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K
Sbjct: 233 EREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKF 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 284
F ++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 293 QDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLGINLSH 348
>gi|406697434|gb|EKD00693.1| hypothetical protein A1Q2_04885 [Trichosporon asahii var. asahii
CBS 8904]
Length = 618
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 143/284 (50%), Gaps = 50/284 (17%)
Query: 16 VPTDFTKYTYYSDLTRKVFCK------------YDPNFMAASLDEAYLDITEVCRERGIS 63
P F YT S R+V K YD N M A LDE IT ++ ++
Sbjct: 226 TPLHFDLYTEASRKIREVLLKVSYTILHRADIQYDANLMMAGLDEG---ITGYIQQHDVT 282
Query: 64 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 123
+E E+LR V GLT SAG+APNR+LAK PNG F L +R ++ F+ L
Sbjct: 283 ALEAVEKLRAEVEAATGLTISAGIAPNRMLAK-------PNGVFELEFNRATIVKFMHDL 335
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
P+RKI G G+VTE L + FG+ L +H +G+ S
Sbjct: 336 PVRKIPGFGRVTERCL-EGFGVE-----------LTGSKAH--------LGIADNSVQPY 375
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
+ RKS+ ERTF + + +LA IAE L D+++ G+T+T+K K ++E +
Sbjct: 376 KREERKSVGVERTFRDKWEDEDILAELANIAEELEDDLKRLQYSGKTVTVKYKLHTYESK 435
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 287
+RA +++KYI++ +DIL ELPV +RL+G+R++ +
Sbjct: 436 SRAQSVKKYINTKDDIL--------PELPVRIRLLGIRLSNLKD 471
>gi|303257690|ref|ZP_07343702.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
gi|302859660|gb|EFL82739.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
Length = 366
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 144/271 (53%), Gaps = 9/271 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A +LCP LIFVP +Y S ++F +Y S+DEA+LD+T+V R+
Sbjct: 61 MPSSVAARLCPNLIFVPGRMDEYKKASAEVFEIFSRYTNLIEQVSIDEAFLDVTDVWRDY 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G + +EIA+ ++ V E GL SAGV+ N+ LAK+ SD KP+G V+ PN A + F
Sbjct: 121 GYA-MEIAKLIKEDVRREVGLIISAGVSYNKFLAKIASDWRKPDGLCVIHPN---AALKF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
I LP++ I G+G VT + + GI T +++ +K S L F S ++ + +
Sbjct: 177 IDRLPVKAIWGVGPVTSQKM-EALGIFTGKDLREKDLSFLVEQFGSSGLSYY-NFARCID 234
Query: 179 STNTPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RK +S+E T S E L L+E+ + L ++K GR+LTLK++
Sbjct: 235 DRPVRTERIRKQVSAEITLSKDEGNLNKLEDTLSELTDYLMTRLRKNDFLGRSLTLKVRF 294
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK 268
+F+ TR T + ILK A LL+
Sbjct: 295 HNFKTITRTQTSNSVFNEKSQILKTAESLLE 325
>gi|125625067|ref|YP_001033550.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris MG1363]
gi|389855450|ref|YP_006357694.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris NZ9000]
gi|189027668|sp|A2RNH9.1|DPO4_LACLM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|124493875|emb|CAL98869.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris MG1363]
gi|300071872|gb|ADJ61272.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris NZ9000]
Length = 364
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 159/295 (53%), Gaps = 22/295 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYLD+TE + S I
Sbjct: 75 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYLDVTE-NKIGAQSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P++ + F++ LP
Sbjct: 134 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPDE---ALEFLAKLP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L G T ++ + + L F + F G+ ++
Sbjct: 191 VEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAERFGIYGWELFQKAN-GIHNSKVK 248
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ ERT+ LLY +L +I++ +S +++ L+G + LKL+
Sbjct: 249 NHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKRHQLKGNIIILKLRY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDK 289
+ F T+ ++ + + S EDI + A + + + + +RL+G+ V+ F K
Sbjct: 304 SDFTTLTKRKSMVENLDSPEDIAEAARQIFEEIDYDESLGVRLLGVTVSGFGVQK 358
>gi|418743619|ref|ZP_13299980.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
gi|410795642|gb|EKR93537.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
Length = 360
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P IFV F Y SD R++F +Y SLDE YLD+T ++
Sbjct: 59 MPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKK 116
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V
Sbjct: 117 NIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTA 173
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LPI G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 174 FIDPLPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGED 232
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K
Sbjct: 233 EREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKF 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 284
F ++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 293 QDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLGINLSH 348
>gi|333378665|ref|ZP_08470395.1| hypothetical protein HMPREF9456_01990 [Dysgonomonas mossii DSM
22836]
gi|332883069|gb|EGK03353.1| hypothetical protein HMPREF9456_01990 [Dysgonomonas mossii DSM
22836]
Length = 353
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 148/291 (50%), Gaps = 20/291 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A + CP LIFVP F Y S ++F +Y SLDEA+LD+TE
Sbjct: 48 MASKTALRKCPHLIFVPARFDVYKSVSRQIMEIFHEYTDLVEPLSLDEAFLDVTENNMNI 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +IA+E++ + E LT SAGV+ N+ LAK+ SD NKPNG FV+ F+
Sbjct: 108 A-SATQIAQEIKQKIREATNLTASAGVSFNKFLAKIASDQNKPNGLFVVKPK--VAEQFV 164
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
SL I + G+GKVT ++ + GI T ++ Q+ + L +VF + ++ + +
Sbjct: 165 ESLAIERFFGVGKVTAKVMHQM-GIKTGWDLKQRSENELVSVFGKAGHIYYQN-ARAIDY 222
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA-------DMQKEGLRGRTLT 232
R RKSISSE TF D L E+A L A +QK+ +GRT+T
Sbjct: 223 RPVESQRIRKSISSETTFDRDID------SLDELAVELDAVARDTFDYLQKKKFKGRTVT 276
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 282
LK+K A F++ TR+ T + E K LLK +L +RLIGL V
Sbjct: 277 LKIKYADFKIITRSRTFADAVEDYELFYKAGFELLKLVDLSPKVRLIGLGV 327
>gi|325578163|ref|ZP_08148298.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
gi|325159899|gb|EGC72028.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
Length = 344
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 156/294 (53%), Gaps = 22/294 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP LI VP + Y S ++F +Y SLDEAYLD+T+ C +
Sbjct: 49 MPTAQAIKKCPNLILVPVNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVTD-CTQC 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P++ V F
Sbjct: 108 SGSATWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHE---VEQF 164
Query: 120 ISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLG 176
+ +LP++KI G+GKVT E +L+ G+ TCE++ QK S+L +F + G
Sbjct: 165 VKTLPLKKIPGVGKVTSERLLK--MGLETCEDV-QKLDQSILLNIFGKMGKRIW-DFSHG 220
Query: 177 LGSTNTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGLRG-RT 230
+ R RKSI ERT S + + ALL AE+ + L R
Sbjct: 221 IDDREIQAYRERKSIGVERTLSKNIRHLEQGIALLDNLYAELIRRIERSAPNVPLTVFRK 280
Query: 231 LTLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 283
+ +KLK F+V T T L + S + +L+ + + S+RL+GL VT
Sbjct: 281 IGVKLKFEDFQVTTLEKTGLPLSLKSFQQLLEQ---IWQRSQGKSIRLVGLHVT 331
>gi|335429441|ref|ZP_08556339.1| DNA polymerase IV [Haloplasma contractile SSD-17B]
gi|334889451|gb|EGM27736.1| DNA polymerase IV [Haloplasma contractile SSD-17B]
Length = 398
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 163/297 (54%), Gaps = 20/297 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP + A+KLCP LI VP + Y YS Y S+DE YLD+TE+ + +
Sbjct: 62 MPVYKAKKLCPHLIIVPGNMELYREYSKKFFDFLKTYTTQIEVGSIDEGYLDVTELAKSK 121
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+E+A+E++T ++EE L CS G+APN+ LAK+ SD+ KP G VL R V +
Sbjct: 122 --HPVELAKEIQTRLHEEIKLPCSIGIAPNKFLAKMASDMKKPLGITVL--RRRDVPDML 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA--VFSHSTADFFLSVGLGLG 178
S+PI K+ GIGK T L + I T ++ K + L A V + F+L+ G G
Sbjct: 178 WSMPIGKMYGIGKKTAPKLLNE-EIKTIGDLANKENELKARKVLGNQYNHFYLNAN-GYG 235
Query: 179 STNTPQARFR--KSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
++ +R KS+ + RT+S V + +A Y+KL E++EM+S + ++ +T+T+
Sbjct: 236 NSKIDLSRHSDYKSVGNSRTYSKNIVKKQEA--YQKLDELSEMVSNRLIRKTYLAKTITV 293
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIGLRVTQFNE 287
+++ FE T++ T++K++++ ++ K L L + P+ RL+G+ + E
Sbjct: 294 QIRYKDFETHTKSKTIEKHVNTKVELFKVIKRLFDELWNQNPI--RLLGVSTSNIVE 348
>gi|386585380|ref|YP_006081782.1| DNA polymerase IV [Streptococcus suis D12]
gi|353737526|gb|AER18534.1| DNA polymerase IV [Streptococcus suis D12]
Length = 355
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 161/298 (54%), Gaps = 35/298 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE + GIS
Sbjct: 75 AYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NKLGISSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++ +SL
Sbjct: 133 VKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL---ASL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
P+ K G+GK T L ++ G+ T +++L ++ D F G L G
Sbjct: 190 PVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDLYRKARG 241
Query: 179 STNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRGRT 230
+N+P R RKSI ERT+ + LLYR +L + + ++A +++ G +GRT
Sbjct: 242 ISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRNGKKGRT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 286
+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ VT F
Sbjct: 297 IVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKGIRLLGVTVTNFQ 354
>gi|383811006|ref|ZP_09966486.1| ImpB/MucB/SamB family protein [Prevotella sp. oral taxon 306 str.
F0472]
gi|383356411|gb|EID33915.1| ImpB/MucB/SamB family protein [Prevotella sp. oral taxon 306 str.
F0472]
Length = 378
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 156/292 (53%), Gaps = 19/292 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A++ CP+L+ VP F +Y S ++F +Y SLDEA+LD+TE ++GIS
Sbjct: 78 AKRRCPDLVIVPCHFDRYKEVSRQIHQIFHEYTDLVEPISLDEAFLDVTE--NKKGISMA 135
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
I+IA+E++ ++E LT SAGV+ N+LLAK+ SD+ KP+G +++ DR M FI SLP
Sbjct: 136 IDIAKEIKQKIFERTSLTASAGVSYNKLLAKIASDMRKPDGIYIVHPDR--AMDFIGSLP 193
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 183
I K+ G+G T + ++ G+ E++ + + VF + + G+
Sbjct: 194 IEKLWGVGPRTAAKMHEM-GVFKGEQLRNISYNHMTQVFG-KMGKIYYNFSRGIDERPVI 251
Query: 184 QARFRKSISSERTFS---VTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKS+ E TF E K + LY E+ E L+ + GRTLTLKLK
Sbjct: 252 VSRERKSVGCEHTFREDLHIESKIIIELYHLTLELVERLT----RNQFEGRTLTLKLKWD 307
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ TR++T K + + DIL A +LL S+RL+GL V+ D
Sbjct: 308 ATTQITRSLTQGKILRTKHDILPLAKLLLSETGYKKHSIRLMGLSVSSSTTD 359
>gi|218780742|ref|YP_002432060.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
gi|254781919|sp|B8FBE8.1|DPO4_DESAA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|218762126|gb|ACL04592.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
Length = 396
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 153/291 (52%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ARKLCP +F+P +Y S ++F +Y P SLDEA++D+T R
Sbjct: 58 MPIVTARKLCPRGVFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVTSSTRLF 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G SG EIA +R + G+T SAG+A N+L+AK+ SD+ KPNG V+P D+ F+
Sbjct: 118 G-SGEEIAANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPADQ--TQEFL 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
LPI ++ G+G + + L G+ T ++ + +L A F + + + G+
Sbjct: 175 DPLPISRLWGVGPASRNKLIS-LGVKTIRDVRKLTQEMLSANFGRN-GEVIYAFARGMDD 232
Query: 180 TNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
KSI E TF T ++A Y+ + ++E ++ M+KE GRT+ +K+K
Sbjct: 233 RPVEPPGAAKSIGREITFDRNVYTLEEA--YKWMLFLSERVARRMRKEEATGRTVNIKVK 290
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 285
A F TR+VTL+ +I HA LL+ L S +RL+G+ ++Q
Sbjct: 291 YADFIQVTRSVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQL 341
>gi|217979283|ref|YP_002363430.1| DNA-directed DNA polymerase [Methylocella silvestris BL2]
gi|217504659|gb|ACK52068.1| DNA-directed DNA polymerase [Methylocella silvestris BL2]
Length = 359
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 148/290 (51%), Gaps = 9/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CPELIFV F Y SD R +F +Y P SLDEAYLD++E
Sbjct: 61 MPSVTARRKCPELIFVKPRFDVYRAVSDEMRAIFAEYTPIIEPLSLDEAYLDVSETLNG- 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S EIA+++R + E LT SAGV+ N+ LAK+ SD KP+G FV+ +M F+
Sbjct: 120 ALSATEIAQQIRAKIRERTNLTASAGVSYNKFLAKLASDHRKPDGLFVI-TPKMGP-AFV 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGS 179
LP+RK G+G T ++ + GI T ++ Q + + F + ++ V G+
Sbjct: 178 EPLPVRKFHGVGPATAAKMKRL-GIETGFDLKAQSLAFMQQQFGKA-GPYYYGVARGVDE 235
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAE-IAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF R+ E I + + + G GRTLTLK+K A
Sbjct: 236 RPVRAHRIRKSVGAENTFFADLFTFEAAREAMEPIVDKVWRHCETAGAHGRTLTLKVKYA 295
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F+ TR+ T ++ ++ + + LL P +RL+G+ ++ +
Sbjct: 296 DFQQITRSRTGMTPFATRAELERQSLDLLAPLFPCDKGVRLLGVSLSSLD 345
>gi|254369305|ref|ZP_04985317.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
gi|157122255|gb|EDO66395.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
Length = 349
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 158/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKSIS E T+ ED L KL + + L++ M +E + + +K
Sbjct: 234 NREVNPVRIRKSISVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 292 FTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>gi|150019053|ref|YP_001311307.1| DNA polymerase IV [Clostridium beijerinckii NCIMB 8052]
gi|149905518|gb|ABR36351.1| DNA-directed DNA polymerase [Clostridium beijerinckii NCIMB 8052]
Length = 348
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 8/296 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP F+AR+ CP IFV + KY S ++F + P S+DE +LD+++ +
Sbjct: 57 MPMFMAREKCPNGIFVSGRYGKYAKVSQEIFEIFNEVTPLVEPVSIDEGFLDLSQ---GK 113
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
GIE A ++ V++E GLT S G++ N+ LAK+ S+ NKPNG + + + + F
Sbjct: 114 IKDGIEAARYIKNRVFKEVGLTLSIGISYNKFLAKLASEWNKPNGIKEIRKEMIPDILF- 172
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPI K+ G+GKV+ L ++ GI EE+ + + G+
Sbjct: 173 -PLPISKVHGLGKVSVAKLNNM-GIYYIEELYKMPKEFYIEYLGKNGIEIYDRIRGIDGR 230
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI ERT T++K L + E + + + ++ + G+T+TLK KT
Sbjct: 231 KVELIRERKSIGKERTLKFDTKNKEELREYIKEFSFEIEEILNRKNVSGKTVTLKFKTKD 290
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPS 294
FE TR+ TL YI + +I K A LL +E L +RLIG+ ++ F E +V+ S
Sbjct: 291 FENHTRSKTLNYYIGTQLEIYKVAEELLDSEQLKEEVRLIGVSISSFKETEVQQMS 346
>gi|424033801|ref|ZP_17773212.1| DNA polymerase IV [Vibrio cholerae HENC-01]
gi|408873914|gb|EKM13097.1| DNA polymerase IV [Vibrio cholerae HENC-01]
Length = 342
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 152/306 (49%), Gaps = 32/306 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+ R
Sbjct: 49 MPTARALQLCPHLLVVPGRMHVYKQVSQQIRTIFERYTPLIEPLSLDEAYLDVTDSTACR 108
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P ++ V +
Sbjct: 109 G-SATLIAESIRNDIWNELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEK--VQEVV 165
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
LP+ KI G+GKV+ L G CE++ L F A + G+
Sbjct: 166 DKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW-KRSHGIDD 223
Query: 180 TNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGL 226
R RKS+ ERTFS V EDK LY +L + E S D + K+G
Sbjct: 224 REVVVERERKSVGVERTFSENIVTYDECWQVIEDK--LYPELEKRLEKASPDKSIIKQG- 280
Query: 227 RGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF 285
+KLK A F++ T + Q + +++L+ +LK + +RL+GL V
Sbjct: 281 ------IKLKFADFQLTTIEHIHPQLELDDFKELLRD---ILKRQNGREIRLLGLSVMLK 331
Query: 286 NEDKVR 291
E + R
Sbjct: 332 PEQQAR 337
>gi|332715601|ref|YP_004443067.1| DNA polymerase IV [Agrobacterium sp. H13-3]
gi|325062286|gb|ADY65976.1| DNA polymerase IV [Agrobacterium sp. H13-3]
Length = 359
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 147/284 (51%), Gaps = 9/284 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 61 MPSVTAKRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGM 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + L SAG++ N+ LAK+ SD+NKPNGQ V+ P + F
Sbjct: 121 EIA-TEIALEIRAKIKAVTSLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---F 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +L ++K G+G T ++ GI T ++ K + +F ++ G+
Sbjct: 177 VEALAVKKFHGVGPATAERMKR-HGIETGLDLKSKSLGFLQQHFGKSGPYFYNIARGIDE 235
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF+ +D L +L +A+ + + + G+T+T+K+K +
Sbjct: 236 RQVKPDRIRKSVGAEDTFAEDIDDLNLAKAELGPLAQKVWRYCEAHDITGKTVTVKIKYS 295
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 280
F TR+ T+ +S I + + LL + P +RL+G+
Sbjct: 296 DFSQATRSKTVSGAVSDLATIQEMSETLLASVFPFKRPVRLLGI 339
>gi|404255732|ref|ZP_10959700.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26621]
Length = 348
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 17/298 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+P A + CP+L+F+P F Y S +F ++ SLDEAYLD+T+ R
Sbjct: 48 LPSVTAARRCPDLVFMPPRFDVYKAVSRQIHAIFAEFSDLIQPLSLDEAYLDVTD--NRR 105
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + A+E+R + EE GLT SAG++ N+ LAK+ SD KPNGQF + D A +
Sbjct: 106 GLPTAWSTAKEIRARILEETGLTASAGISFNKFLAKLASDHRKPNGQFAVTPDMGA--DW 163
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP+ + G+G VT ++ + GI T ++ K ++AD++ + G+
Sbjct: 164 VQTLPVARFHGVGPVTAAKMQRL-GIETGSDLRAKPLAFLQEHFGNSADWYFRIARGIDD 222
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD-----MQKEGLRGRTLTLK 234
R RKS SE TF D+ L E + AD + G GRT+T+K
Sbjct: 223 RPVNPNRQRKSSGSEITF----DRDLTAAAEIEAGVLGQADDVWQWCARAGAFGRTVTVK 278
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKV 290
+K A F++ TR+ T + + + + L+++ LP +RL+G+ V+ F+ V
Sbjct: 279 IKYADFQMITRSRTRPTAVKTQTGLRDTSLRLVRSVLPTEKGIRLVGVTVSNFDRSVV 336
>gi|148254691|ref|YP_001239276.1| DNA polymerase IV [Bradyrhizobium sp. BTAi1]
gi|146406864|gb|ABQ35370.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. BTAi1]
Length = 354
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 157/295 (53%), Gaps = 19/295 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE
Sbjct: 57 MPSVTAKRQCPDLIFVKPRFEVYKAISLQVRAIFAEHTPLIEPLSLDEAYLDVTE----- 111
Query: 61 GISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
+ GI +IA +R ++ E GL SAG++ N+ LAK+ SD KPNGQ+V+ +
Sbjct: 112 NLQGIPLARDIALRIRETIKTETGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGP- 170
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGL 175
F+ +LP+ K GIG T L GI T ++ ++ + L F S A ++ +
Sbjct: 171 -AFVETLPVGKFHGIGPATAAKL-TALGIRTGLDIRRQSLAFLQQHFGKSGA-YYYWISR 227
Query: 176 GLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTL 233
G+ R RKS+ +E TF VT+ L + +L + + + + G GRT+TL
Sbjct: 228 GIDERPVRADRIRKSVGAETTF-VTDLTELEPMTAELRPLIDKVWRHCESTGKSGRTVTL 286
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
K+K + FE+ TR+ +L ++ D+ + A LL+AE+P+ +RL+G+ ++
Sbjct: 287 KVKFSDFEIITRSRSLLSPVTGRTDLERLAVGLLQAEMPLPKPVRLLGVALSSLQ 341
>gi|225871905|ref|YP_002753359.1| DNA polymerase IV [Acidobacterium capsulatum ATCC 51196]
gi|225791585|gb|ACO31675.1| putative DNA polymerase IV [Acidobacterium capsulatum ATCC 51196]
Length = 374
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 161/303 (53%), Gaps = 17/303 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DFT+Y S R++F ++ SLDEAYLD+T +
Sbjct: 68 MPAVTAERLCPQAIFVPPDFTRYKAVSRAVREIFERHTDLIEPLSLDEAYLDVTH--NKT 125
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
G+ + ++A +R + EE LT SAGVAPN+ LAK+ SD KP+G FV+ P D + T
Sbjct: 126 GLPTATKVAITIRRQIREELSLTASAGVAPNKFLAKIASDWRKPDGLFVIQPQD---LAT 182
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV-GLGL 177
F+ L + +I G+GKVTE L GI T + LQ L A + + L + L
Sbjct: 183 FLPPLAVGRIPGVGKVTEERLAR-LGIRTAGD-LQHYDL--ATLESNFGRYGLRLYHLAR 238
Query: 178 GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
G ++P R KS+S+E TF + + ++E + ++E RT+ LKL
Sbjct: 239 GVDHSPVTPNRPTKSVSAEDTFEADIPLSATEPVIRRLSEKVWNASRREARIARTVVLKL 298
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS--LRLIGLRVTQFNEDKVRA 292
KT F + TR++T + +S E++ A S+ + +L RLIG+ ++ F + + A
Sbjct: 299 KTGDFHIHTRSLTPETPPASCEELTAIALSLRERVDLGADRLYRLIGVGLSNFRDPEPDA 358
Query: 293 PSD 295
D
Sbjct: 359 AED 361
>gi|422002069|ref|ZP_16349308.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
gi|417259281|gb|EKT88659.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
Length = 360
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 155/295 (52%), Gaps = 16/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P IFV F Y SD R++F +Y SLDE YLD+T ++
Sbjct: 59 MPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT-FNKKN 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTF 119
++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V F
Sbjct: 118 MPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTAF 174
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LP+ G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 175 IDPLPVGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGEDE 233
Query: 180 TNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K
Sbjct: 234 REVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKFQ 293
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 284
F ++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 294 DFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTKAIRLLGINLSH 348
>gi|121998646|ref|YP_001003433.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
gi|254781922|sp|A1WY69.1|DPO4_HALHL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|121590051|gb|ABM62631.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
Length = 356
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 147/295 (49%), Gaps = 12/295 (4%)
Query: 2 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 61
P AR+ CPE IF+ F +Y S +F + SLDEAYLD+T R RG
Sbjct: 60 PAAWARRRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRG 119
Query: 62 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 121
S +A+ +R + EE GLT SAGV+ N+LLAK+ SD KP+G +V+P + +++
Sbjct: 120 -SATHMAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGP--AYVA 176
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 181
+ PIR++ G+G T L + GI ++L VF + A G+
Sbjct: 177 AQPIRRLHGVGPATAARL-ERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRP 235
Query: 182 TPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
R RKSI +ERTF T D ++++LA + ++ ++ L RT+TLKL+ A F
Sbjct: 236 VRPRRSRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHHELVARTVTLKLRYADF 295
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSL---RLIGLRVTQFNED 288
E TR V+ ++ + DI LL PV L L GL+ Q +D
Sbjct: 296 ESITRRVSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPKQREQD 350
>gi|289665427|ref|ZP_06487008.1| DNA polymerase IV [Xanthomonas campestris pv. vasculorum NCPPB 702]
gi|289668390|ref|ZP_06489465.1| DNA polymerase IV [Xanthomonas campestris pv. musacearum NCPPB
4381]
Length = 359
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 158/294 (53%), Gaps = 15/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F
Sbjct: 114 GMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ L + +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED L L + +A ++ GRT+ LKLK
Sbjct: 230 ERPVEPDQEVQSVSSEDTFS--EDLPLDALDPHILRLAGKTWLATRRTERIGRTVVLKLK 287
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS--LRLIGLRVTQFNE 287
T++F + TR+ T ++ +S E + + A S+ + E+P RL+G+ ++ F++
Sbjct: 288 TSNFRILTRSYTPEQPPASQEALAQIALSLTRRVEMPAQTRYRLVGVGLSGFSD 341
>gi|319763873|ref|YP_004127810.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
gi|330823863|ref|YP_004387166.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
gi|317118434|gb|ADV00923.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
gi|329309235|gb|AEB83650.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
Length = 397
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 146/291 (50%), Gaps = 13/291 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCPE I +P DF +Y YS ++V P +DE Y+D T+V + G
Sbjct: 95 AARLCPEAILLPVDFAEYRRYSRRFKEVILSIAPVMEDRGVDEVYIDFTQVPGGQREGGR 154
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+A ++ S+++ GLTCS GVAPN+L+AK+ S+ +KPNG V P D + I L
Sbjct: 155 VLARLIQKSIHDATGLTCSIGVAPNKLIAKMASEFDKPNGISIVQPGD---LQARIWPLA 211
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS---- 179
RKI GIG T L+ GI+T ++ + L A F ++ + G
Sbjct: 212 CRKINGIGPKTNDRLQ-AHGIHTIGDLAARPRDWLVAHFGKASGAWLHDAAWGRDERPVV 270
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + + + ER DKALL + + ++ D+ +G +GRT+ +KL+ A
Sbjct: 271 TESEPVSMSRETTFERDLHAVSDKALLGEIFTTLCQQVAQDLAAKGYKGRTIGIKLRYAD 330
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNED 288
F+ TR T+ + + I + A LK +P++ LRL+G+RV + D
Sbjct: 331 FQTATRDQTIDQPTRDAATIRRAAGQCLK-RVPLTKRLRLLGVRVGKLQPD 380
>gi|418753975|ref|ZP_13310210.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
gi|409965705|gb|EKO33567.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
Length = 360
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 156/296 (52%), Gaps = 18/296 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P IFV F Y SD R++F +Y SLDE YLD+T ++
Sbjct: 59 MPCSKAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKK 116
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I ++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V
Sbjct: 117 NIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTA 173
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LP+ G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 174 FIDPLPVGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGED 232
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K
Sbjct: 233 EREVEPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKF 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 284
F ++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 293 QDFSLKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTKAIRLLGINLSH 348
>gi|440782777|ref|ZP_20960697.1| DNA polymerase IV [Clostridium pasteurianum DSM 525]
gi|440219823|gb|ELP59033.1| DNA polymerase IV [Clostridium pasteurianum DSM 525]
Length = 347
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 159/293 (54%), Gaps = 11/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++A+ CP IF+P + +Y S+ +F + S+DEAYLD+T V R+
Sbjct: 57 MPIYMAKAKCPNGIFLPVRYERYKEISNKIFDIFNEITTLIEPLSIDEAYLDLTHVNRD- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ IA ++ + +E GL S G++ N+ LAK+ SD NKPNG ++ + + F
Sbjct: 116 ---SLYIASFIKNRIKKETGLNISIGLSYNKFLAKLASDWNKPNGLKIIKKSDVPKILF- 171
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
L I K+ G+GK + L ++ GI T EE+ + + L +F + + + G+ +
Sbjct: 172 -PLSIDKVHGLGKKSVKKLNNI-GIFTVEELYKLSVNFLVDLFGKFGPEIYDRIR-GIDN 228
Query: 180 TNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKSI E T + T+D+ + + A ++ M+ + L G+ +T+K++TA
Sbjct: 229 REVKILRERKSIGKETTLINDTDDEEDIKPYIKSFASSIANIMKNKNLSGKNITIKIRTA 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKV 290
SF T++ TL YI+S EDI + A S+L K +L +RLIG+ ++ F E K+
Sbjct: 289 SFINHTKSKTLTYYINSEEDIYREACSILEKLKLEEKIRLIGISISSFKEKKI 341
>gi|89256328|ref|YP_513690.1| DNA polymerase IV [Francisella tularensis subsp. holarctica LVS]
gi|156502401|ref|YP_001428466.1| DNA polymerase IV [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367662|ref|ZP_04983683.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|290952880|ref|ZP_06557501.1| DNA polymerase IV [Francisella tularensis subsp. holarctica URFT1]
gi|422938730|ref|YP_007011877.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|423050677|ref|YP_007009111.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
gi|122500763|sp|Q2A3L2.1|DPO4_FRATH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|226738232|sp|A7NC07.1|DPO4_FRATF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|89144159|emb|CAJ79420.1| DNA polymerase IV, devoid of proofreading,damage inducible protein
P [Francisella tularensis subsp. holarctica LVS]
gi|134253473|gb|EBA52567.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|156253004|gb|ABU61510.1| ImpB/MucB/SamB family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407293881|gb|AFT92787.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|421951399|gb|AFX70648.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
Length = 349
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 158/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 292 FTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>gi|374373625|ref|ZP_09631285.1| DNA polymerase IV [Niabella soli DSM 19437]
gi|373234598|gb|EHP54391.1| DNA polymerase IV [Niabella soli DSM 19437]
Length = 348
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 163/291 (56%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+ +FV F Y S+ ++F ++ SLDEAYLD+T+ +
Sbjct: 50 MPSKTAQRLCPQALFVYPRFDAYKTVSEKIHEIFHRFTDIIEPLSLDEAYLDVTKDKQNI 109
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTF 119
G S ++IA +++ ++ EE LT SAGV+ N+ +AK+ SD+NKP+G F+ P+ + F
Sbjct: 110 G-SALDIARQIKQAIKEELQLTASAGVSINKFVAKIASDMNKPDGLTFIGPS---RIEAF 165
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ LP+ K G+GKVT ++ G++T ++ + S + F ++L V G+
Sbjct: 166 MEQLPVGKFHGVGKVTAAKMK-TMGLHTGADLKKLSESEITKQFGKPGKFYYLIV-RGID 223
Query: 179 STNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R KS+S E T+ S K ++ +L +A L+ +Q+ GL+GRT+T+K K
Sbjct: 224 NREVQPHRETKSVSVEDTYQSDLTTKETMWTELETLAIRLADRLQRHGLKGRTVTVKFKF 283
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 285
F + TR+++L + ++ E L A+ L + PV +RL+GL V+ F
Sbjct: 284 HDFTIITRSLSLPELVNDQES-LSAATRTLLDKAPVDEKKVRLLGLGVSNF 333
>gi|187735823|ref|YP_001877935.1| DNA-directed DNA polymerase [Akkermansia muciniphila ATCC BAA-835]
gi|254781918|sp|B2UKN1.1|DPO4_AKKM8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187425875|gb|ACD05154.1| DNA-directed DNA polymerase [Akkermansia muciniphila ATCC BAA-835]
Length = 359
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 149/295 (50%), Gaps = 13/295 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP LIF Y S +F +Y SLDEA+LD+TE +
Sbjct: 58 MPSMKALKLCPHLIFTRNRMDVYKAVSAQIHAIFHRYTDLVEPLSLDEAFLDVTE--NKP 115
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI ++IA ++ + E LT SAGV+ N+ LAK+ SD KP+G F + R F
Sbjct: 116 GIPLAVDIARRIKKEIRRELHLTASAGVSYNKFLAKIASDYRKPDGLFTIHPSRAE--KF 173
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I++LPI G+G T +R + N + + L F + A F+ + G+
Sbjct: 174 IAALPIEAFWGVGHATAERMRALSITNGAQLRARDKDFLVRHFGKTGAIFY-NFARGVDD 232
Query: 180 TNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+R RKS+ E T+ +VT +AL R L +AE L+ + + G RG TLTLK+K
Sbjct: 233 RPVEPSRMRKSVGCEETYRENVTRAEALEQR-LPLLAEELAGRLARSGFRGNTLTLKVKF 291
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNEDK 289
F +TR T+ + ++ E IL A L++ EL + RL+GL V+ E++
Sbjct: 292 PDFVQKTRCATVPEILTEKEGILPLARTLME-ELDSGDRTFRLLGLSVSHPQEEQ 345
>gi|21911131|ref|NP_665399.1| DNA polymerase IV [Streptococcus pyogenes MGAS315]
gi|28895184|ref|NP_801534.1| DNA polymerase IV [Streptococcus pyogenes SSI-1]
gi|341958651|sp|P0DA78.1|DPO4_STRP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|341958652|sp|P0DA79.1|DPO4_STRPQ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21905342|gb|AAM80202.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS315]
gi|28810429|dbj|BAC63367.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
SSI-1]
Length = 365
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 164/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ + A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVVALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTMTNL-ED 355
Query: 289 KV 290
K+
Sbjct: 356 KM 357
>gi|409440154|ref|ZP_11267166.1| DNA polymerase IV [Rhizobium mesoamericanum STM3625]
gi|408747756|emb|CCM78348.1| DNA polymerase IV [Rhizobium mesoamericanum STM3625]
Length = 362
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 148/289 (51%), Gaps = 9/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP LIFVP F Y S R++F +Y SLDEAYLD+++ +
Sbjct: 64 MPSATAKRKCPALIFVPPRFDVYRAVSQQIREIFAEYTTVIEPLSLDEAYLDVSQNLKGM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F
Sbjct: 124 KIA-TEIASEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP++K G+G T + + GI+T ++ +K + +F + G+
Sbjct: 180 VEALPVQKFHGVGPATAEKMHRL-GIDTGADLKEKTLEFLVEHFGKSGPYFYGIARGIDE 238
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TFS R+ L + E + + G+ +T+TLK+K A
Sbjct: 239 RQVKPDRVRKSVGAEDTFSHDVHAYEPAREGLQPLIEKVWGYCEANGIGAKTVTLKVKYA 298
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
F TR+ T+ + + D+ + +LL P +RL+G+ ++
Sbjct: 299 DFNQITRSKTVPAPLPAIADLEEIVDLLLSPIFPPRKGIRLLGVTLSSL 347
>gi|190894484|ref|YP_001984777.1| DNA polymerase IV [Rhizobium etli CIAT 652]
gi|190700145|gb|ACE94227.1| DNA-directed DNA polymerase protein [Rhizobium etli CIAT 652]
Length = 362
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 151/291 (51%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFV F Y S R++F +Y SLDEAYLD+T +
Sbjct: 64 MPSVTAKRKCPELIFVAPRFDVYKAVSQQIREIFAEYTAVIEPLSLDEAYLDVTHNLKGM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 124 EIA-TEIALEIRAKIKQATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGL 177
+ +LP++K G+G T + + GI+T ++ KG L + H + +F + G+
Sbjct: 180 VEALPVKKFHGVGPATADKMHRL-GIDTGADL--KGKTLEFLVEHFGKSGPYFHGIARGI 236
Query: 178 GSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ +E TFS R+ L + E + + G+ +T+TLK+K
Sbjct: 237 DERQVKPNRVRKSVGAEDTFSQDLHAYEPARQGLQPLIEKVWGYCEANGIGAKTVTLKVK 296
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
A F TR+ T+ + ++ + S++L P +RL+G+ ++
Sbjct: 297 YADFHQITRSKTVPTLLRGITELEEIISLMLAPIFPPRKGIRLLGITLSSL 347
>gi|432331934|ref|YP_007250077.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methanoregula formicicum SMSP]
gi|432138643|gb|AGB03570.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methanoregula formicicum SMSP]
Length = 385
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 158/309 (51%), Gaps = 24/309 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A LCP +F+P DF Y S + Y S+DEA+L+++ +
Sbjct: 89 MPISRAYVLCPHAVFLPPDFPAYVQASAAVMAILRSYGFRMEQVSIDEAFLNVSSL---- 144
Query: 61 GISGIE--IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL--PNDRMAV 116
G G AEE+R +++ GL+CS G+AP+R++AK+ SD KP G ++ P R
Sbjct: 145 GDFGTAQAFAEEVRACIHKRLGLSCSIGIAPSRIIAKIASDFRKPGGLTIVTPPTAR--- 201
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGL 175
F+S LP+R+I G+GK E +L ++ GI T ++ Q+ +L F S A F +
Sbjct: 202 -DFLSPLPVRRIPGVGKKAEGMLFEM-GIRTIGDLAQQDVQVLIGRFGRS-AIFLHQLAC 258
Query: 176 GLGSTNTPQARFR-KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
G+ S+ P+ KSIS E TF + T+D+ L + E+ + A + EGLR RTLTL
Sbjct: 259 GIDSSGVPEGSGETKSISRETTFEIDTDDREHLLSVIDELIRCVGASLAAEGLRFRTLTL 318
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNEDKVRA 292
K++ + F R+R + + + A L E +RLIG+R++ F +
Sbjct: 319 KIRYSGFITRSRGRSFSHGTDNPAAMKSLAHSLFCEEYRGGKVRLIGIRLSSFEK----- 373
Query: 293 PSDPTQKTL 301
D +Q TL
Sbjct: 374 -RDASQATL 381
>gi|410944344|ref|ZP_11376085.1| DNA polymerase IV [Gluconobacter frateurii NBRC 101659]
Length = 379
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 137/258 (53%), Gaps = 9/258 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+L+FVP F Y S +F +Y P SLDEAYLD+T+
Sbjct: 58 MPSLKAKRLCPDLVFVPGRFDVYRAVSAQIHDIFARYTPLIQPLSLDEAYLDLTDYLGAY 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S +AE +R + +E GLT SAGV+ NR LAK+ SD KP+G FV+ M F+
Sbjct: 118 G-SATLVAERIRADIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPGMGP-DFV 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLG 178
+ L + + GIG T +R GI T ++ + L + H +A F+ + G+
Sbjct: 175 TGLTVDQFHGIGPATAQKMR-ALGIETGADLRKVD--LPTLMRHFGKSAPFYHGISRGID 231
Query: 179 STNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E+T+ S + K L IA L +Q++ L GRT+TLK+K
Sbjct: 232 ERPVVVNRERKSLGTEQTYLSDLQKKDEAEAALDLIATKLWLQVQRKQLTGRTVTLKVKY 291
Query: 238 ASFEVRTRAVTLQKYISS 255
A+F TRA TL I+S
Sbjct: 292 ANFRQITRARTLPAPITS 309
>gi|404254296|ref|ZP_10958264.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26621]
Length = 364
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 154/290 (53%), Gaps = 9/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+P A + CP+L+FVP F Y S + +F Y P SLDEAYLD+T ++
Sbjct: 65 LPSVTALRRCPDLVFVPPRFDVYKAVSRQIQAIFRDYTPLVQPLSLDEAYLDVTANLQDL 124
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ A+ +R + EE GLT SAG++ N+ LAK+ SD KPNGQF + D A ++
Sbjct: 125 P-TAWATAKAIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFAVTPDMGAA--WV 181
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
+LP+ + G+G VT + + GI T ++ K L A F ++ AD++ ++ G
Sbjct: 182 ETLPVSRFHGVGPVTAKKMHRL-GITTGADLRAKSIDFLRANFGNA-ADWYHAIARGEDH 239
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS SE TF+ D + + ++A+ + A K GRT+T+K+K
Sbjct: 240 RPVDPDRIRKSSGSETTFNRDLLDPVEIATGVQQMADDVWAWCAKAEAYGRTVTVKVKYN 299
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 286
F+ TR+ T I ++ + ++ L+++ LP + +RL+G+ V+ F+
Sbjct: 300 DFQQITRSRTYPGPIDTAAKLSAASAELIRSVLPPTKGIRLVGVTVSTFD 349
>gi|322434446|ref|YP_004216658.1| DNA-directed DNA polymerase [Granulicella tundricola MP5ACTX9]
gi|321162173|gb|ADW67878.1| DNA-directed DNA polymerase [Granulicella tundricola MP5ACTX9]
Length = 368
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 150/281 (53%), Gaps = 33/281 (11%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCPE IFVP DFT+Y S R++F ++ SLDEAYLD+TE +
Sbjct: 71 MPAVTAERLCPEAIFVPPDFTRYKAVSRAVREIFERHTDLVEPLSLDEAYLDVTE--NKL 128
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
G++ +A+ +R + EE LT SAGVAPN+ LAK+ SD KP+G FV+ P++ V
Sbjct: 129 GLATATRVAKMIREQIREELNLTASAGVAPNKFLAKIASDWKKPDGLFVIQPHE---VQG 185
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD-FFLSVG--- 174
F+ LP+ +I G+GKVTE ++ V GI T ++ H T + F G
Sbjct: 186 FLMPLPVGRIPGVGKVTEERMKSV-GIATVGDL--------HAMDHPTLEQHFGRYGRRL 236
Query: 175 --LGLGSTNTPQA--RFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGL 226
L G P R KS+S+E TF + E + L+ R+LAE + S ++
Sbjct: 237 YELARGVDENPVVANRSSKSLSAEDTFEKDIPLAETEPLV-RRLAEKVWLAS---RQNAR 292
Query: 227 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 267
RT+ LKLKT F TR++T +S+E +L +V L
Sbjct: 293 MARTVVLKLKTKEFSTLTRSLTPLAMPTSAE-MLGDVAVFL 332
>gi|325280117|ref|YP_004252659.1| DNA polymerase IV [Odoribacter splanchnicus DSM 20712]
gi|324311926|gb|ADY32479.1| DNA polymerase IV [Odoribacter splanchnicus DSM 20712]
Length = 363
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 160/320 (50%), Gaps = 37/320 (11%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A KLCP+LIFV Y S+ ++F +Y +LDEA+LD+TE +
Sbjct: 61 MSSMQALKLCPDLIFVRGRMEHYKAVSEEIHRIFHEYTDLIEPLALDEAFLDVTENKKNI 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ ++IA ++ + E+ GL SAGV+ N+ LAK+ SD KP+G FV+ + A FI
Sbjct: 121 PLA-VDIARAIKKEIREKLGLVASAGVSYNKFLAKIASDYRKPDGLFVIHPRKAA--AFI 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM-----------LQKGSLLCAVFSHSTADF 169
+ LPI GIGKVT H + GI+ ++ K L FSH
Sbjct: 178 ARLPIEVFWGIGKVTAHKMH-ALGIHNGAQLRNCSLEFLNRNFGKAGQLYYDFSH----- 231
Query: 170 FLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLR 227
G+ R RKS+ E TF +T AL+ +L +A+ L + K G +
Sbjct: 232 ------GVDLRPVEVVRIRKSVGCENTFEKDLTTHTALII-ELWHVADELIRRLGKAGFK 284
Query: 228 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQ 284
G TLTLK+K F +TR++++ + + ++IL A LL A L ++ +RL+GL V+
Sbjct: 285 GHTLTLKIKFHDFTQKTRSISVGHELYTMKEILPLAKQLL-AGLQLTHYRIRLMGLTVS- 342
Query: 285 FNEDKVRAPSDPTQKTLTNF 304
+ V +P DP Q T
Sbjct: 343 ---NPVSSPDDPEQGIPTQL 359
>gi|329119433|ref|ZP_08248118.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464366|gb|EGF10666.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
Length = 358
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 150/294 (51%), Gaps = 25/294 (8%)
Query: 10 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 69
CP+ +FVP F Y S +F ++ SLDEAYLD+T + +G +IA
Sbjct: 67 CPQAVFVPPQFPLYRQVSQQIHGIFRRHTDLIEPLSLDEAYLDVTRNKQNHPYAG-DIAR 125
Query: 70 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 129
+R + E GLT SAG+APN+ LAK+ SD +KP+GQF LP + + F+++LP+ KI
Sbjct: 126 LIRADILAETGLTASAGIAPNKFLAKIASDWHKPDGQFSLPPQK--IEAFLAALPLGKIP 183
Query: 130 GIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVG-----LGLGSTNT 182
G+GKVT + + G+ T ++ +++G L A+ F G L G N
Sbjct: 184 GVGKVTLQKMHRL-GLKTAGDLRRMERGEL---------ANLFGKWGYRLYDLARGIDNR 233
Query: 183 P--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
P R R IS+E T AL+ + L +A L A ++ R R++TLKLKTA F
Sbjct: 234 PVKAERERVQISTEITLPEDLPLALILQHLPHLAADLWAQAARKQCRARSVTLKLKTARF 293
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDKVR 291
TR++T + + +L A L P + RLIGL V+ + ++
Sbjct: 294 RTLTRSLTYSSPLPDTTALLAAARELAARIPPDTEGGYRLIGLGVSHLEQPGIQ 347
>gi|167563378|ref|ZP_02356294.1| DNA polymerase IV [Burkholderia oklahomensis EO147]
gi|167570546|ref|ZP_02363420.1| DNA polymerase IV [Burkholderia oklahomensis C6786]
Length = 394
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 158/293 (53%), Gaps = 20/293 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A + CPEL+ +P +Y S L ++ Y P+ SLDEAYLD++ R +
Sbjct: 78 MSSALAMRKCPELLILPPAMDRYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCQ 137
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G SG IA E+R V++ G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F
Sbjct: 138 G-SGTLIAREIRERVHDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAF 193
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLG 176
+++LP+RK+ G+GKVT L D GI TC+E L+ SL H F + G
Sbjct: 194 VAALPVRKLHGVGKVTAARL-DRLGIRTCDE-LRGWSLF--DLHHEFGAFGRRLYELAHG 249
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEG-LRG-RTL 231
+ + RKS+S E T+ +D L + AEI +L A +++ G +R R L
Sbjct: 250 IDERPVRADQERKSVSVETTY--VQDLDTLDQCAAEIRRLTALLDARIERAGAVRSIRKL 307
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 284
+K++ A F+ RT + + + A L++ + PV L +G+R+ +
Sbjct: 308 YVKIRFADFQ-RTTVECVADATDAETAVALLAKGLVRRKQPVRLLGVGVRIDE 359
>gi|412986578|emb|CCO15004.1| DNA polymerase kappa [Bathycoccus prasinos]
Length = 809
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 155/301 (51%), Gaps = 31/301 (10%)
Query: 12 ELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR--ERGISGIEIAE 69
EL+ DF +Y + L +V+ KYDP+F+A S DE YL++TE + ER ++ E ++
Sbjct: 376 ELLVTDVDFDRYAEIAKLGHEVYRKYDPDFLAPSSDEVYLNMTEYFKFDEREMTPEEKSD 435
Query: 70 EL-------RTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 122
E+ R V+E+A LT S G P+ LAK+CSD+NKPNGQ +L ++ F+++
Sbjct: 436 EMEKTMKKIREEVFEKAKLTVSGGGGPSMRLAKICSDVNKPNGQKILTFTSEDILKFLNT 495
Query: 123 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 182
L IRKIGGIG E L + F + TC +++ + L V + F SV +G+G
Sbjct: 496 LSIRKIGGIGASMERYL-NAFDVKTCGDIITHKAKLAKVCHATAYTFLFSVAMGVGMETV 554
Query: 183 PQ-----ARFRKSISSERTFSVTEDK-ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
P A R+ +S R++ K L++ L A+ +S ++++ R + +
Sbjct: 555 PPPIQDGAPGRRGVSMNRSWYPGISKYEYLFKILESFAQGVSKEVKRLNFIPRQIMI--- 611
Query: 237 TASFEVRTRAVTLQK-----------YISSSEDILKHASVLLKAEL-PVSLRLIGLRVTQ 284
TA F+ + VT Q+ +I + +D+ + P+ +R +G+RV+
Sbjct: 612 TAKFQHNFQQVTRQRRLPRASQSYKDWIPTVKDLFDKLYHEFDGDTKPLDVRRLGVRVSC 671
Query: 285 F 285
F
Sbjct: 672 F 672
>gi|182679061|ref|YP_001833207.1| DNA-directed DNA polymerase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634944|gb|ACB95718.1| DNA-directed DNA polymerase [Beijerinckia indica subsp. indica ATCC
9039]
Length = 373
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 148/297 (49%), Gaps = 11/297 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+LIFVP F Y S R +F ++ SLDEAYLD+T R
Sbjct: 70 MPSVTALRKCPDLIFVPPRFDIYKAVSRRIRAIFAEHTALIEPLSLDEAYLDVTSNLRNV 129
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S EIAE++R + E GLT SAGV+ N+ LAK+ SD NKPNG FV+ +M F+
Sbjct: 130 A-SATEIAEQIRARILAETGLTASAGVSYNKFLAKLASDHNKPNGLFVI-TPKMGP-GFV 186
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP+ K GIG T + + I T ++ + ++ + G+
Sbjct: 187 EALPVSKFHGIGPATAAKMEKL-AIATGRDLKARPLAFLQQHFGKAGTYYYWIARGVDER 245
Query: 181 NTPQARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKSI +E TF++ T + A Y L I E + + LR RT+TLK+K
Sbjct: 246 PVRPDRERKSIGAENTFAIDLYTFEAA--YAALTPIMEKVWRSREMMNLRARTVTLKVKY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKVRA 292
A F+ TR+ T + I + + + LL P + +RL+G+ ++ F + + A
Sbjct: 304 ADFQQITRSRTDDEGIVTRVLFEERVASLLAPLFPTTKGIRLLGVTLSAFAKPEPEA 360
>gi|395490223|ref|ZP_10421802.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26617]
Length = 364
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 154/290 (53%), Gaps = 9/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+P A + CP+L+FVP F Y S + +F Y P SLDEAYLD+T ++
Sbjct: 65 LPSVTALRRCPDLVFVPPRFDVYKAVSRQIQAIFRDYTPLVQPLSLDEAYLDVTANLQDL 124
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ A+ +R + EE GLT SAG++ N+ LAK+ SD KPNGQF + D A ++
Sbjct: 125 P-TAWATAKAIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFAVTPDMGA--AWV 181
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
+LP+ + G+G VT + + GI T ++ K L A F ++ AD++ ++ G
Sbjct: 182 ETLPVSRFHGVGPVTAKKMHRL-GITTGADLRAKSIDFLRANFGNA-ADWYHAIARGEDH 239
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS SE TF+ D + + ++A+ + A K GRT+T+K+K
Sbjct: 240 RPVDPDRIRKSSGSETTFNRDLLDPVEIATGVQQMADDVWAWCAKAEAYGRTVTVKVKYN 299
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 286
F+ TR+ T I ++ + ++ L+++ LP + +RL+G+ V+ F+
Sbjct: 300 DFQQITRSRTYPGPIDTAAKLSAASAELIRSVLPPTKGIRLVGVTVSTFD 349
>gi|223932767|ref|ZP_03624765.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|302023273|ref|ZP_07248484.1| DNA polymerase IV [Streptococcus suis 05HAS68]
gi|330832046|ref|YP_004400871.1| DNA polymerase IV [Streptococcus suis ST3]
gi|386583321|ref|YP_006079724.1| DNA polymerase IV [Streptococcus suis D9]
gi|223898600|gb|EEF64963.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|329306269|gb|AEB80685.1| DNA polymerase IV [Streptococcus suis ST3]
gi|353735467|gb|AER16476.1| DNA polymerase IV [Streptococcus suis D9]
Length = 355
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 160/298 (53%), Gaps = 35/298 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE + GI S
Sbjct: 75 AYECCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NKLGISSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP G +LP D + ++ +SL
Sbjct: 133 VKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPYGLTLILPEDAVGIL---ASL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
P+ K G+GK T L ++ G+ T +++L ++ D F G L G
Sbjct: 190 PVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDLYRKARG 241
Query: 179 STNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRGRT 230
+N+P R RKSI ERT+ + LLYR +L + + ++A +++ G +GRT
Sbjct: 242 ISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRNGKKGRT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 286
+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ VT F
Sbjct: 297 IVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKGIRLLGVTVTNFQ 354
>gi|115314775|ref|YP_763498.1| DNA polymerase IV [Francisella tularensis subsp. holarctica OSU18]
gi|122325207|sp|Q0BM23.1|DPO4_FRATO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115129674|gb|ABI82861.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
Length = 349
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 158/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYYFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 292 FTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>gi|313205495|ref|YP_004044152.1| DNA-directed DNA polymerase [Paludibacter propionicigenes WB4]
gi|312444811|gb|ADQ81167.1| DNA-directed DNA polymerase [Paludibacter propionicigenes WB4]
Length = 361
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 13/290 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A + CP LIFV F Y S ++F +Y SLDEA+LD+TE ++ +
Sbjct: 61 ALRKCPHLIFVMPRFDVYKSVSRQIMEIFHEYTDLVEPLSLDEAFLDVTENHKQIA-TAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+IA+E++ + E GLT SAGV+ N+ LAK+ SD NKP+G FV+ A F+ +LPI
Sbjct: 120 QIAKEIKQKIRETVGLTASAGVSFNKFLAKIASDYNKPDGLFVITPK--AAEQFVDTLPI 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
+ G+GKVT + + GI T ++ Q + + +
Sbjct: 178 ERFFGVGKVTAERMHQL-GIKTGADLKQWSEQGLVTNFGKVGHMYYQNARAIDNRPVESQ 236
Query: 186 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD----MQKEGLRGRTLTLKLKTASFE 241
R RKS+SSE TF++ D +Y ++ ++L+ + +QK+ +GRT ++KLK + F
Sbjct: 237 RIRKSVSSETTFAIDTD---IYEEILPELDVLTREVVDYIQKKDFKGRTASIKLKFSDFR 293
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKV 290
V TR+ T +S E + +LK +L +RLIG+ V NE++V
Sbjct: 294 VITRSKTFPTPVSDYETLYGAGKEMLKLVDLSPKIRLIGIGVKN-NEEEV 342
>gi|319943512|ref|ZP_08017794.1| DNA-directed DNA polymerase [Lautropia mirabilis ATCC 51599]
gi|319743327|gb|EFV95732.1| DNA-directed DNA polymerase [Lautropia mirabilis ATCC 51599]
Length = 414
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 9/283 (3%)
Query: 9 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 68
LCP+ I +P DF +Y +S + + P +DE ++D+T+V + G +A
Sbjct: 110 LCPQAILLPPDFDRYRRFSQAFKAIILSEAPVMEDRGIDEVFIDLTKVAGVQEDGGRALA 169
Query: 69 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLPIRK 127
L+ + E GL+CS GVAPN+L+AK+ SD++KP+G + P D + T I LP R+
Sbjct: 170 TRLQARIQAETGLSCSIGVAPNKLIAKMASDLDKPHGITIIRPED---LQTRIWPLPCRR 226
Query: 128 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 187
I GIG T+ L+ + + + + L F T + G
Sbjct: 227 INGIGPKTDERLQKLGVLTIAQLAACDTAWLVEHFGTRTGQWLHDAAWGRDDRPVANRAE 286
Query: 188 RKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
+IS E TF D+A L +AE + D+Q++G RGRT+ +KL+ A F
Sbjct: 287 PVTISRETTFERDLHAVHDRAELAAIFTRLAEQTAQDLQRKGYRGRTVGIKLRYADFRTV 346
Query: 244 TRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF 285
TR +T + + DI + A LK +L RL+G+RV+
Sbjct: 347 TRELTTESPTQDAGDIRRLAGRCLKRVDLQRRFRLLGIRVSSL 389
>gi|424877038|ref|ZP_18300697.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164641|gb|EJC64694.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 364
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 151/294 (51%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFV F Y S R +F +Y P SLDEAYLD+TE +
Sbjct: 65 MPSVTAQRKCPELIFVKPRFDVYKAVSLQIRTIFAEYTPMIEPLSLDEAYLDVTENLKGM 124
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + GLT SAG++ N+ LAK+ SD NKPNGQFV+ P + A F
Sbjct: 125 EIA-TEIAAEIRARIKSTTGLTASAGISYNKFLAKMASDQNKPNGQFVITPKNGPA---F 180
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ LP++K G+G T + + GI+T ++ +K L F S +F + G+
Sbjct: 181 VERLPVKKFHGVGPATAEKMHRL-GIDTGADLKEKTLDFLVEHFGKS-GPYFYGIARGID 238
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +E TFS R+ L + E + + + +T+TLK+K
Sbjct: 239 NRLVKPDRVRKSVGAEDTFSQDIHSFEPAREGLQPLIEKVWGYCEANEIAAKTVTLKVKY 298
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
A F TR+ T + + D+ + +LL P +RL+G+ ++ + +
Sbjct: 299 ADFSQITRSKTALAPLPAITDLDEVVGLLLAPLFPPRKGIRLLGVTLSSLEKRR 352
>gi|240142517|ref|YP_002967028.1| DNA polymerase IV [Methylobacterium extorquens AM1]
gi|240012462|gb|ACS43687.1| DNA polymerase IV [Methylobacterium extorquens AM1]
Length = 408
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 161/316 (50%), Gaps = 33/316 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A++ CPEL+FV F Y S R +F ++ P SLDEAYLD+TE +
Sbjct: 111 MASVTAKRKCPELVFVKPRFEVYREVSMAIRAIFAEHTPIIEPLSLDEAYLDVTENL--K 168
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G + EIA E++T++ E LT SAGV+ + LAK+ SD KP+G FV+ RM F
Sbjct: 169 GFETATEIAREIKTAIRERLNLTASAGVSYQKFLAKIASDYRKPDGLFVI-TPRMGP-KF 226
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ +LP+ + GIG TE + + GI T ++ K + L F S A +F + G+
Sbjct: 227 VLTLPVGRFHGIGPATEAKMARL-GIATGADLKSKSLAFLQEHFGKSGA-YFHGIARGVD 284
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM----------LSADMQKEGLRG 228
R RKS+ +E TF R LA I EM + + G+RG
Sbjct: 285 HRPVRPDRIRKSVGAENTFE---------RDLAGIEEMREHLQPIVDKVWSRCAATGVRG 335
Query: 229 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFN 286
RT+TLK+K + FE TR+ + + S +D+ A+ LL+ P+ L RL+G+ ++ +
Sbjct: 336 RTVTLKVKFSDFEQITRSRSTAVDVGSRDDLEGIAADLLRQLFPMRLGVRLLGVTMSGLD 395
Query: 287 EDKVRAPSDPTQKTLT 302
++ +P Q +L
Sbjct: 396 NER----EEPRQLSLA 407
>gi|389809863|ref|ZP_10205529.1| DNA polymerase IV [Rhodanobacter thiooxydans LCS2]
gi|388441393|gb|EIL97669.1| DNA polymerase IV [Rhodanobacter thiooxydans LCS2]
Length = 363
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 145/300 (48%), Gaps = 9/300 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+LIFVP DF +Y S R++F ++ SLDEAYLD+T
Sbjct: 64 MPAIRAERLCPQLIFVPPDFVRYKAVSRQIREIFARHTELIEPLSLDEAYLDVTTTKSAL 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S AE +R ++ EE LT SAGVAPN+ LAK+ SD KP+G FV+ + V TF+
Sbjct: 124 G-SATATAEAIRAAIREETRLTASAGVAPNKFLAKIASDFRKPDGLFVVRPQQ--VETFL 180
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP+ ++ G+GKV E L GI T E+ + G+
Sbjct: 181 TPLPVGRLPGVGKVMEAKL-AALGIATVGELRAFAQAELEQRFGRWGRRLHELSRGVDEH 239
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLKLKTAS 239
R IS+E TF L + +A A Q E R RT+ LKLKTA
Sbjct: 240 PVQPERPTLQISAEDTFEHDLLLEELEPHIRRLAAKAWAAYQHEHARVARTVVLKLKTAD 299
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLL-KAELPV--SLRLIGLRVTQF-NEDKVRAPSD 295
F TR++T + S+ ++ A L + E P RL G+ + F N D +A +D
Sbjct: 300 FHTLTRSLTPVQRPRSAAELADIACALRERVERPADSRYRLAGVGLAGFVNGDSYQAQAD 359
>gi|387126480|ref|YP_006295085.1| DNA polymerase IV [Methylophaga sp. JAM1]
gi|386273542|gb|AFI83440.1| DNA polymerase IV [Methylophaga sp. JAM1]
Length = 362
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 156/288 (54%), Gaps = 16/288 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCPE IFV F Y S+ R++F +Y SLDEAYLD+T G S
Sbjct: 65 AYRLCPEAIFVRPRFDAYKEVSNQIREIFWRYASEVEPLSLDEAYLDVTYTESFNG-SAT 123
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IA+ +++ + E GLT SAGV+ N+ LAK+ SD++KP+G +++ ++ F++ LPI
Sbjct: 124 LIAKAIKSEILAETGLTASAGVSYNKFLAKIASDMDKPDGLYLIRPEQG--QEFVNKLPI 181
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
K GIG TE ++++ G++T ++ QK + L F S ++ ++ +
Sbjct: 182 GKFHGIGPATEIKMKNL-GVHTGHDLRQKSLTELSERFGKS-GQYYYNIARAIDDRPVRS 239
Query: 185 ARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R RKS+ E TF+ ED L L ++AE + + K ++GRT+T+K+K A F+
Sbjct: 240 QRIRKSLGKETTFA--EDILSIPDLNNILLDVAEQVLGSLSKHNMQGRTVTVKVKYADFQ 297
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQFN 286
TRA TL I ++ +L + E PV RL+GL ++ F+
Sbjct: 298 QVTRAQTLDHSIGFADLQEWLPKLLARTEAGHKPV--RLVGLSLSGFD 343
>gi|401425000|ref|XP_003876985.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493229|emb|CBZ28514.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 463
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 102/183 (55%), Gaps = 3/183 (1%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA+KLCP L P F Y + R + +YDP+++A LDE +D+T+ R
Sbjct: 43 MPGFIAKKLCPSLWIRPPRFDLYRREAAEVRAIGAQYDPHYVAVGLDELTMDVTDYLRTH 102
Query: 61 GISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMT 118
E + E R V E LTCS G+A AK+ S++ KPNGQ +L R V+
Sbjct: 103 PDRSAEDVCAEFRRRVEEATQLTCSGGIAHTAAFAKLASNVKKPNGQHILALRTREEVLA 162
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
++ +P+R + GIG TE L G+ TC++ L + + LC +F T F+LSVGLGL
Sbjct: 163 YVRDMPVRDVPGIGFATEQRL-HALGVVTCKDFLARKAELCYLFREKTFAFYLSVGLGLV 221
Query: 179 STN 181
T+
Sbjct: 222 RTH 224
>gi|359429948|ref|ZP_09220965.1| DNA polymerase IV [Acinetobacter sp. NBRC 100985]
gi|358234628|dbj|GAB02504.1| DNA polymerase IV [Acinetobacter sp. NBRC 100985]
Length = 355
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 11/287 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A+KLCP+++ + F KY S ++F +Y SLDEAYLD+TE ++ S
Sbjct: 65 AKKLCPQVVVIEPHFEKYREVSAQIHQIFQQYTALIEPLSLDEAYLDVTENLKDIP-SAT 123
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPNG FV+ + V+ FI L +
Sbjct: 124 EVATQIRADIFAVTGLTASAGVAPNKFLAKIASDWNKPNGLFVIKPHQ--VLKFIQDLAL 181
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
KI G+GKVT+ L + ++T ++ L + ++L F +L G+
Sbjct: 182 NKIPGVGKVTQEKLNQL-NLHTLGDLQLIEENVLIHHFGKYGKQLYL-YAQGIDHRPVKA 239
Query: 185 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 244
R R+ IS E TF A ++E + + K+ L R + +KLK +F+V
Sbjct: 240 ERERQQISKEITFDDDYTLAQCQHAWQPLSEQVWRSLNKKQLTARGVNVKLKLKNFQVLQ 299
Query: 245 RAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQFNE 287
+ + + + S D L+ + L E+ + RL+G+ V Q +
Sbjct: 300 HSKSFKSPLQSQHD-LQQVVIQLLEEMRIDPDFQFRLVGVGVYQLQQ 345
>gi|417842070|ref|ZP_12488165.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
gi|341947850|gb|EGT74491.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
Length = 355
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 151/299 (50%), Gaps = 20/299 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP LI VP + T Y S ++F +Y SLDEAYLD+T C++
Sbjct: 60 MPTAQAIKKCPNLILVPVNMTLYKQVSAQIHQIFHRYTDIIEPLSLDEAYLDVTH-CQKC 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V F
Sbjct: 119 SGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VEEF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I +L + KI G+GKVT L D+ G+ TC ++ ++ G+
Sbjct: 176 IKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDD 234
Query: 180 TNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTL 231
R RKS+ E+T +V + AL LY +L E +S ++ R +
Sbjct: 235 REVQAHRERKSVGVEQTLIENIHTVEQALALLNNLYDELIRRLERVSRNIPLSSF--RKI 292
Query: 232 TLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 289
+KLK F+V T T L + S + +L + K S+RLIGL V E+K
Sbjct: 293 GVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRSKGR---SIRLIGLHVNLPEENK 348
>gi|320352846|ref|YP_004194185.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
gi|320121348|gb|ADW16894.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
Length = 388
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 148/295 (50%), Gaps = 8/295 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ +F+ +Y S +F +Y P S+DEA+LD+T+
Sbjct: 60 MPSVRAHQLCPQAVFIRPRMARYQEMSRQIMTLFRRYTPLVEQLSVDEAFLDVTDNLMGE 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ +R ++ E GLT SAGV+ N+ LAK+ S +KP+G V+P DR FI
Sbjct: 120 P-SATRIAQAIRAAIRETTGLTASAGVSYNKFLAKIASGYHKPDGLTVIPPDR--ARDFI 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
++LPI K G+G TE ++ GI T ++L+ T FF + GL
Sbjct: 177 AALPIGKFYGVGPATERKMQ-AHGIRTGADLLRFSRQEMVALFGKTGHFFHDIARGLDQR 235
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI +E T + D A + L ++ + +S + ++ GRTLTLK++
Sbjct: 236 PVQPVRVRKSIGAETTLAEDILDYARVSVVLYQLVQQVSRLLAEKATGGRTLTLKVRYND 295
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQF-NEDKVR 291
F TR+ T + S++DIL LL A +RL+G+ V NE + R
Sbjct: 296 FTTITRSSTTPQGFFSAQDILAQLPRLLAATEAGRRRIRLLGVTVANLCNEQEAR 350
>gi|332686123|ref|YP_004455897.1| DNA polymerase IV [Melissococcus plutonius ATCC 35311]
gi|379727827|ref|YP_005320012.1| DNA polymerase IV [Melissococcus plutonius DAT561]
gi|332370132|dbj|BAK21088.1| DNA polymerase IV [Melissococcus plutonius ATCC 35311]
gi|376318730|dbj|BAL62517.1| DNA polymerase IV [Melissococcus plutonius DAT561]
Length = 370
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 152/285 (53%), Gaps = 15/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ F P ++ KY+ S R +FC+Y AS+DEAYLD+T + + S I
Sbjct: 78 AYELCPQATFKPGNYQKYSEVSQQIRTIFCRYTDIIEPASIDEAYLDVT-INKLHSKSAI 136
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA ++ ++++E LTCSAG++ N+ LAK+ SD KP G +LP + F+ +L
Sbjct: 137 KIARLIQQTIWQELQLTCSAGISYNKFLAKLASDYQKPKGLTVILPEE---AEDFLKNLA 193
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
I K GIGK T + ++ GI T ++ + L F + V G+
Sbjct: 194 IEKFHGIGKKTVPKMHEL-GIYTGRDLYHVSEIVLIQHFGKMGYSLYRKVR-GIHDAPVD 251
Query: 184 QARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ RKS+ E T+ TE++ + +L ++A + A +Q+ G+T+ LK++ +
Sbjct: 252 ATKDRKSVGKEHTYRKPLATEEQVV--TQLRQLAMKVEASLQQAQKHGKTIVLKVRYEDY 309
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 283
T+ VTLQ+YI ED+ ++ + EL ++RL+G+ +T
Sbjct: 310 TTITKRVTLQEYIYMKEDLFYQVQMIWENELEWKKNIRLLGITLT 354
>gi|167627838|ref|YP_001678338.1| DNA polymerase IV [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|226738231|sp|B0TZS5.1|DPO4_FRAP2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|167597839|gb|ABZ87837.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 350
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 157/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKATSAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+++ + TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKNM-NVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + L++ M +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLEACLEKLPNLYNKLTSRMTEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + + +LK+ + L + +RLIG+ +
Sbjct: 292 FTDTKFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHIRLIGIGI 336
>gi|15674011|ref|NP_268186.1| DNA polymerase IV [Lactococcus lactis subsp. lactis Il1403]
gi|22095634|sp|Q9CE21.1|DPO4_LACLA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|12725077|gb|AAK06127.1|AE006432_9 DNA-damage-inducible protein P [Lactococcus lactis subsp. lactis
Il1403]
Length = 363
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 159/296 (53%), Gaps = 24/296 (8%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y + AAS+DEAYLD+TE + S I
Sbjct: 74 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDDIEAASIDEAYLDVTE-NKIGAQSAI 132
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P + + F++ LP
Sbjct: 133 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPEE---ALEFLAKLP 189
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNT 182
+ K G+GK T L + N + LQK L F + + G+ ++
Sbjct: 190 VEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLAERFGVYGWELYQKAN-GIHNSKV 246
Query: 183 PQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ ERT+ LLY +L++I+ +S ++ L+G + LKL+
Sbjct: 247 KNYRERKSVGKERTYG-----KLLYLPDDIKAELSKISGKVSDSLKSHQLKGSIVILKLR 301
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIGLRVTQFNEDK 289
+ F T+ +L + + S E+I + A + L+ + + +RL+G+ VT+F K
Sbjct: 302 YSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYDESLGVRLLGVTVTEFGAQK 357
>gi|378827935|ref|YP_005190667.1| DNA polymerase IV [Sinorhizobium fredii HH103]
gi|365180987|emb|CCE97842.1| DNA polymerase IV [Sinorhizobium fredii HH103]
Length = 371
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 148/289 (51%), Gaps = 9/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R +F +Y P SLDEAYLD+TE +
Sbjct: 73 MPSVTAKRKCPDLIFVKPRFDVYRAVSLQIRSIFAEYTPMIEPLSLDEAYLDVTENLKGI 132
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 133 EIA-TEIAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGQA---F 188
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ ++P++K G+G T + + GI T ++ K + +F + G+ +
Sbjct: 189 VEAVPVKKFHGVGPATAEKMHRL-GIETGADLKGKTQEFLVEHFGKSGPYFYGIARGIDN 247
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TFS R+ L + E + + G+ +T+TLK+K A
Sbjct: 248 REVKPDRVRKSVGAEDTFSEDIHSFEPAREGLQPLIEKVWDYCEANGIGAKTVTLKVKYA 307
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
F TR+ T+ + + D+ + +LL P +RL+G+ ++
Sbjct: 308 DFSQITRSKTVAAPLQTIGDLEEVVGLLLAPIFPPRRGIRLLGVTLSSL 356
>gi|408673241|ref|YP_006872989.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
gi|387854865|gb|AFK02962.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
Length = 355
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 151/286 (52%), Gaps = 13/286 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M IA++ CP LIFV F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 57 MSSRIAKQKCPSLIFVKPRFEVYKQVSREIREIFLEYTPLVEPLSLDEAYLDVTENL--K 114
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
GI+ EIA+E++ + E+ LT SAGV+ N+ LAK+ SD KP+G FV+ P+ A
Sbjct: 115 GIATATEIAQEIKVRIKEKTTLTASAGVSVNKFLAKIASDYRKPDGLFVIKPSQAEA--- 171
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ L I K GIG+VT + + GI T +E+ +K ++ + G+
Sbjct: 172 FVEKLEIAKFHGIGRVTAEKMHKM-GIFTGKELREKSLEFLVNNFGKVGRYYHDIARGID 230
Query: 179 STNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ + RKS+ E TF +TE LY +L +I E L MQ+ G+++TLK+K
Sbjct: 231 NRSVNPDSIRKSVGVENTFDRDLTEPDD-LYHELDDIIEQLWRRMQRANAFGKSITLKIK 289
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGL 280
A F+ TR+ T + + + K + +L LP +RL+G+
Sbjct: 290 FADFDTITRSRTTHLPVFEKDFLAKVSYEMLNNLFPLPKGVRLMGV 335
>gi|313674610|ref|YP_004052606.1| DNA-directed DNA polymerase [Marivirga tractuosa DSM 4126]
gi|312941308|gb|ADR20498.1| DNA-directed DNA polymerase [Marivirga tractuosa DSM 4126]
Length = 359
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 157/296 (53%), Gaps = 13/296 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A C +L+FV F +Y S L R++F +Y SLDEAYLD+TE +
Sbjct: 61 MPSKLAASKCKDLVFVKPRFDRYRELSHLIREIFYRYTDLVEPLSLDEAYLDVTE--NKM 118
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GIS +IA E++ ++ E GLT SAGV+ N+ LAK+ SD KP+G F++ + V++F
Sbjct: 119 GISTATDIAIEIKKAIKSEIGLTASAGVSINKFLAKIASDYRKPDGIFIIKPHQ--VLSF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGL 177
I LPI K G+GK T + + I T ++ K L + H +F SV G
Sbjct: 177 IEQLPIEKFFGVGKKTAEKMHRL-NIKTGADLQAKS--LKELVKHFGKQGRYFYSVSRGE 233
Query: 178 GSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ +E TFS++ + K+ + L IAE ++ T+TLK+K
Sbjct: 234 DYRKVNPNRIRKSVGAENTFSISLKTKSAILEALQPIAEKCWKRYKQSDANAHTITLKVK 293
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN-EDKV 290
F+ TR+ + ++ I S+ + L+ + EL S+RL+G ++ F E+K+
Sbjct: 294 FDDFKQITRSKSFEEAIYSAAIFDQGLESLMDSFELYQSVRLVGCSLSNFEIEEKI 349
>gi|374623299|ref|ZP_09695812.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
gi|373942413|gb|EHQ52958.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
Length = 383
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 149/296 (50%), Gaps = 14/296 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARK PE I +P DF Y YS + P +DE Y+D+T V G SG
Sbjct: 87 ARK-APEAILLPPDFEAYRDYSRRFKTAVAAIAPCIEDRGIDEIYIDLTHVP---GASG- 141
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+ + L+ +V + GLTCS G+APN+LLAK+CS+++KP+G +L D V T I LP+
Sbjct: 142 PLGQRLKQAVRDATGLTCSIGIAPNKLLAKLCSELDKPDGLTLLTTD--DVPTRIWPLPV 199
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
K+ GIG L + GI T ++ G LL F + + G+
Sbjct: 200 GKVNGIGPKAAARL-EALGILTVGDLAACGPGLLREQFGPTYGAWLHQAARGIDDRPVET 258
Query: 185 ARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+S+S E TF +D+A L + +S D+ ++G RGRT+ +KL+ F
Sbjct: 259 VSVPRSVSRETTFERDLHPRQDRAELSEIFTALCMRVSQDLARKGCRGRTVGIKLRYEDF 318
Query: 241 EVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFNEDKVRAPSD 295
TR +TL + +S++ DI + A L + L LRL+G+RV+ + AP+D
Sbjct: 319 RTLTRDITLARPVSAAMDIRRAAGECLRRVPLEQRLRLLGVRVSGLSFGDEDAPAD 374
>gi|256426123|ref|YP_003126776.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
gi|256041031|gb|ACU64575.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
Length = 371
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 160/294 (54%), Gaps = 15/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCPELIF+ F Y S R++F ++ SLDEA+LD+TE ++
Sbjct: 66 MPSKRALQLCPELIFIRPRFDVYKEASRKIREIFSRHTDIIEPLSLDEAFLDVTEDKQQI 125
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTF 119
G S IEIA+ ++ ++ +E LT SAGV+ N+ +AK+ SD+NKP+G F+ P+ ++ +F
Sbjct: 126 G-SAIEIAKLIKQAIKDELQLTASAGVSVNKFVAKIASDLNKPDGLTFIGPS---SIESF 181
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+ K G+GKVT ++ + G++T ++ + F+ + G+
Sbjct: 182 MEKLPVEKFFGVGKVTADKMKRM-GLHTGADLKRLSENDLKTHFGKVGAFYYRIVRGIDE 240
Query: 180 TNTPQARFRKSISSERTFSV----TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R KS+ +E TF TE+ + +L +IA + +++ GL+GRT+TLK+
Sbjct: 241 REVQPHRETKSLGAEDTFPYDLTRTEE---MNAELEKIAVTVYERLKRYGLKGRTVTLKI 297
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNE 287
K + F TR + + E IL+ A LL + P +RL+G+ ++ F E
Sbjct: 298 KYSDFRQITRNQSFPVPVGDLEKILETAKQLLLSTEPEDKPVRLLGISLSNFGE 351
>gi|148263204|ref|YP_001229910.1| DNA-directed DNA polymerase [Geobacter uraniireducens Rf4]
gi|146396704|gb|ABQ25337.1| DNA-directed DNA polymerase [Geobacter uraniireducens Rf4]
Length = 408
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 156/303 (51%), Gaps = 25/303 (8%)
Query: 4 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 63
F AR+ CP+LI VP + +YT S + Y P S+DEA+LDIT R G S
Sbjct: 61 FEARQKCPDLICVPGNNRRYTSISRRIMAMLHDYTPLVEVFSIDEAFLDITGSLRLFG-S 119
Query: 64 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 123
IA ++ + GLTCS G+APN+LLAK+ S++ KP+G V+ +R+A + + +L
Sbjct: 120 ASRIAHLIKARIRHRFGLTCSIGIAPNKLLAKLASEMKKPDGLTVIHQERVAAI--LENL 177
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG-----LGLG 178
PIR++ GIG+ TE L + GI TC E+ G + + F VG +GLG
Sbjct: 178 PIRELCGIGRQTERTL-TLLGIRTCGEL---GRFPVHILTRR----FGVVGEKLHRMGLG 229
Query: 179 STNTP-----QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 231
+ P A KS+ T +TE +L L +AEM+ +K + G+T+
Sbjct: 230 IDDAPVVPAEAAPDVKSVGHSTTLERDITERGEILA-ILLRLAEMVGRRARKHAVAGKTV 288
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKV 290
TL ++ A F + T Y + S+DI + A +LL +L +RL+G+R+T
Sbjct: 289 TLTIRYADFSTFSLQATAGNYTNQSDDIYQAAVLLLDSVDLRQPVRLLGVRITNLRHHTE 348
Query: 291 RAP 293
+ P
Sbjct: 349 QLP 351
>gi|117926811|ref|YP_867428.1| DNA-directed DNA polymerase [Magnetococcus marinus MC-1]
gi|117610567|gb|ABK46022.1| DNA-directed DNA polymerase [Magnetococcus marinus MC-1]
Length = 357
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 161/308 (52%), Gaps = 16/308 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A+ LC +LI P Y S +F +Y SLDEAYLD+TE
Sbjct: 58 MPMGRAKNLCDQLIIQPGRMQTYKNESHHIHAIFQRYTNLIEPLSLDEAYLDVTENFLNL 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +IA++++T+++EE LT SAG++ N++LAK+ S +NKPNG ++ ++ A FI
Sbjct: 118 N-SATQIAQQIKTAIWEETHLTASAGISVNKMLAKIASAMNKPNGLTLIRPEQAA--QFI 174
Query: 121 SSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+LP+++ GIG+ T E +L+ GI T + Q + + F+ + + +
Sbjct: 175 DTLPVKRFHGIGQRTAERMLQ--LGIETGAHLRQWDRITLIKWFGKAGGFYHELAHNIDN 232
Query: 180 TNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ +E TF +D K L+ + L I L + + LRG TLTLK+K
Sbjct: 233 RPVNPNRERKSVGAEHTFD--QDIFAKPLMQQALNTILAELWNRLDQLQLRGSTLTLKIK 290
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNEDKVRAP 293
A F+ TRA T Q+ IS+ + + + LL+ E P+ +RL+G+ + + A
Sbjct: 291 FADFQQITRAHTAQQIISTQAEAARIITALLQRE-PLYDRGVRLLGISMGHLCSSQT-AT 348
Query: 294 SDPTQKTL 301
+ P Q +L
Sbjct: 349 TQPQQLSL 356
>gi|424835122|ref|ZP_18259792.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
gi|365978249|gb|EHN14341.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
Length = 349
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 153/294 (52%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIA+K CP I+VP +Y S+ K+ + P S+DEAYLDI+ + E
Sbjct: 57 MPVFIAKKRCPFGIYVPGRHDRYKEVSNNIFKILFQITPIVEPVSIDEAYLDISHIKEE- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++A+ ++ V +E GLT S G++ N+ LAK+ SD NKP+G ++ D + +
Sbjct: 116 ---PIKVAKHIKKRVKDEIGLTLSVGISYNKFLAKLASDWNKPDGIKIIKED--MIPRIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGS 179
L I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 171 MPLSINKINGIGKKSVERLNNI-GIYTVEDMHKLSKDFCIEYFGKFGVEIYERI-RGIDY 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT+
Sbjct: 229 REVKVSRERKSIGKEITLKKDIINKEEMKKYLLDFSNKISTNLYKRNSAGKTITVKIKTS 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+F+ TR+ T+ Y ++I A +L +RLIGL V+ E+K++
Sbjct: 289 NFKTHTRSKTVNNYTRDKDEIYSIACDILDNINFKEPIRLIGLTVSNLGENKIK 342
>gi|220915280|ref|YP_002490584.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953134|gb|ACL63518.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 418
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 157/298 (52%), Gaps = 13/298 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDEAYLDITEVC 57
+P AR+LCP+ +F+P F +Y S+L+R+VF +Y P SLDEA+LD++
Sbjct: 64 LPTARARRLCPDGVFLPPRFGRY---SELSRRVFDVYRRYTPLVEPLSLDEAFLDVS-AS 119
Query: 58 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 117
R +G EIA ++ +V E GL SAGVA ++ AK+ +D+ KP+G V+P V
Sbjct: 120 RALHGTGPEIARAIKVAVRGECGLAVSAGVAEVKMAAKIATDLGKPDGLVVVPAG--GVA 177
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLG 176
F++ LP+ ++ G+G+VTE LR + G+ T ++ + S L A + A ++ G
Sbjct: 178 AFLAPLPVGRLWGVGEVTEATLRRI-GVATIGDLARMPESALAAALGPNHARGLRALARG 236
Query: 177 LGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ KS+ +E TF + L R+L A + ++ GL G +TLK+
Sbjct: 237 EDAREVVPDEEAKSVGAEDTFDHDLLGRTALERELLAQAGTVGRRLRAAGLAGHVVTLKV 296
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKVRA 292
K A F + TR VTL++ I + A L + +L +RL G+ V+ F D+ R
Sbjct: 297 KYADFTLVTRRVTLERATDDDRAIFEAARAQLERVDLRRPVRLTGISVSGFAGDEERG 354
>gi|198283550|ref|YP_002219871.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248071|gb|ACH83664.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 374
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 148/284 (52%), Gaps = 13/284 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
AR LCP+ IFV Y S + Y P SLDEA+LD+T + GI +
Sbjct: 73 ARSLCPQAIFVRPRMEAYREASRQVMAILRSYTPLVEPLSLDEAFLDVTAATAD-GILAV 131
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
EIA E+ ++ E LT SAGV+ N+LLAK+ SD KP G FV+P R + F++ LP+
Sbjct: 132 EIAREILDRIHRETRLTASAGVSYNKLLAKLASDWRKPQGLFVIPPKRG--LDFLAPLPV 189
Query: 126 RKIGGIGKVTEHILRDVFGINTCEE---MLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 182
K+ G+G T L GI+T + M Q+ + C F + A +F V G+
Sbjct: 190 GKLHGVGPATVKKL-SAMGIDTVSDLRAMAQERLIRC--FGKAGA-WFYEVARGIDRRPV 245
Query: 183 PQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R RKS+ +ERTFS ED+ + L ++AE ++A +Q L G T+ +K + F
Sbjct: 246 QPTRQRKSVGTERTFSENLEDRGTMLATLQQMAEQVAARLQALALAGYTVNIKARFPDFA 305
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVT 283
TRA T + ++E I + LL +P S+RL+G+ V+
Sbjct: 306 TVTRAHTATEVTGNTEAIAALLTELLDRAVPQGASVRLLGITVS 349
>gi|149277809|ref|ZP_01883949.1| putative DNA polymerase [Pedobacter sp. BAL39]
gi|149231497|gb|EDM36876.1| putative DNA polymerase [Pedobacter sp. BAL39]
Length = 365
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 162/294 (55%), Gaps = 19/294 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP LIFV F Y S R++F +Y SLDEAYLD+TE +
Sbjct: 66 MPSKRALQLCPHLIFVYPRFAAYKEVSRHIREIFRRYTDLIQPLSLDEAYLDVTE--DKL 123
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
GI S I+IA E++ ++ +E LT SAGV+ N+ +AKV SD++KP+G F+ P+ +
Sbjct: 124 GIGSAIDIAMEIKQAIKDELNLTASAGVSINKFVAKVASDMDKPDGLTFIGPSK---IER 180
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
FI LP+ K G+GKVT ++ + G++ ++ L +G L+ +F S FF + G
Sbjct: 181 FIEQLPVEKFHGVGKVTAEKMK-IRGLHKGADLKKLTEGELV-HLFGKS-GHFFYKIVRG 237
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLY---RKLAEIAEMLSADMQKEGLRGRTLTL 233
+ + KSI +E TFS ED LL +L +IA + M++ L GRTLT+
Sbjct: 238 IDHRPVQANQETKSIGAEDTFS--EDLELLTEMNEELCKIAGTVCNRMEQHRLYGRTLTI 295
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRVTQF 285
K+K + F+ TR+ + + I + I+ A LL A +RL+G+ ++ F
Sbjct: 296 KIKFSDFKQITRSRSFSEPIRELDMIISIAEALLVAADISGKKVRLLGISISNF 349
>gi|418408826|ref|ZP_12982140.1| DNA polymerase IV [Agrobacterium tumefaciens 5A]
gi|358004842|gb|EHJ97169.1| DNA polymerase IV [Agrobacterium tumefaciens 5A]
Length = 359
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 9/284 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 61 MPSVTAKRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGM 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + L SAG++ N+ LAK+ SD+NKPNGQ V+ P + F
Sbjct: 121 EIA-TEIALEIRAKIKAVTSLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---F 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +L ++K G+G T ++ GI T ++ K + +F ++ G+
Sbjct: 177 VEALAVKKFHGVGPATAERMKR-HGIETGLDLKSKSLGFLQQHFGKSGPYFYNIARGIDE 235
Query: 180 TNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF +D L +L +A+ + + + G+T+T+K+K +
Sbjct: 236 RQVKPDRIRKSVGAEDTFVEDIDDLDLAKAELGPLAQKVWRYCEAHDITGKTVTVKIKYS 295
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGL 280
F TR+ T+ +S I + + LL + P +RL+G+
Sbjct: 296 DFSQATRSKTVSGAVSDLATIQEMSESLLASVFPFKRPVRLLGI 339
>gi|313888564|ref|ZP_07822230.1| ImpB/MucB/SamB family protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845450|gb|EFR32845.1| ImpB/MucB/SamB family protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 346
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 153/296 (51%), Gaps = 11/296 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++A+ LC LI P +Y S +V Y S+DE+YLDI+ + +
Sbjct: 56 MPMYMAKNLCDHLIIRPMRRERYLEKSREVFEVLKTYTDKIEKVSIDESYLDISGLGYDE 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+I +L+ V+E+ GL+ S G++ N+ LAK+ SD NKP G ++ + + F
Sbjct: 116 -----DIVYDLQKKVFEKTGLSVSCGLSYNKFLAKLASDWNKPRGVKIIRESDIPEILF- 169
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
L IRK+ GIG TE LR++ GINT E++ L +F S + + + G+ +
Sbjct: 170 -PLDIRKVHGIGNKTEKRLRNI-GINTVEDLYSLSYDFLVTMFKKSGEEIYKRIR-GIDN 226
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
RKS+ +E TF VT + L L + ++ +S D+ + + G TLTLK+K +
Sbjct: 227 REVTPNNVRKSLGTESTFEVTSKREKLISHLRDFSKEVSEDLIVKEISGYTLTLKMKDEN 286
Query: 240 FEVRTRAVTLQKYISSSEDIL-KHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 294
F+V+TR+ T + I EDI K + +A LRLIG+ V+ + +R S
Sbjct: 287 FKVKTRSRTYENAIYEEEDIFNKSMEIFEEAYEGDKLRLIGITVSNLVDLNIRQLS 342
>gi|392953721|ref|ZP_10319275.1| DNA-directed DNA polymerase [Hydrocarboniphaga effusa AP103]
gi|391859236|gb|EIT69765.1| DNA-directed DNA polymerase [Hydrocarboniphaga effusa AP103]
Length = 362
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 152/291 (52%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IF P DFT+Y S R++F ++ SLDEAYLD+T E
Sbjct: 63 MPAVRAERLCPDAIFTPPDFTRYRAVSRQVREIFLRHTDLVEPLSLDEAYLDVTTNKTEL 122
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
+ +A+ +R + EE LT SAGVAPN+ LAK+ SD NKP+G FV+ P D +
Sbjct: 123 P-TATAVAQCIREQIREELSLTASAGVAPNKFLAKIASDWNKPDGLFVIRPGD---IDRV 178
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF-LSVGLGL 177
+ LP+ ++ G+GKV E L ++ GI + ++ L+ + L A F LS+G+
Sbjct: 179 LPPLPVGRLPGVGKVMEGKLAEM-GIGSVGDLRLRTAAELEARFGRYGLRLHQLSLGIDH 237
Query: 178 GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
G R +SIS+E TF + L + +AE +K GRT+ LKLKT
Sbjct: 238 GEVKP--DRPTQSISAEDTFERDIPLSELEPHIRRMAEKAWNAARKTPRIGRTVVLKLKT 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 285
A F++ TR++T + S E A L + LP RL+G+ + F
Sbjct: 296 ADFQILTRSLTPGRPPESLERFANIAVELRDRVNLPADRLYRLVGVGLGNF 346
>gi|154340461|ref|XP_001566187.1| putative DNA polymerase kappa [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063506|emb|CAM39687.1| putative DNA polymerase kappa [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 754
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 166/370 (44%), Gaps = 67/370 (18%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFI +LCP+L+ VPTDF S + V YDP +DE + + + +
Sbjct: 282 MPGFIGMRLCPQLVIVPTDFAACRVESAKFKGVVRNYDPAAQVLGMDEIMMRLDDYLAQH 341
Query: 61 GISGI----------EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 110
+ I EE R V E GLT SAG+AP LAK+ SD KPNGQF +
Sbjct: 342 HMDATTHAERFDVAERIIEECRRRVAEVTGLTASAGIAPTPTLAKMASDYKKPNGQFAVR 401
Query: 111 -NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 169
R AVM +++S+P+R++ GIGK E IL GI+T E+ Q+ L + + T +F
Sbjct: 402 LFSREAVMDYLASIPVRRVPGIGKSRESILAG-LGIHTLGEVYQQRHRLFYILTRKTYEF 460
Query: 170 FLSVGLGLG----------------STNTPQA---------RFRKSISSERTF----SVT 200
L+ +G+G +T T A RKS+ ERTF +
Sbjct: 461 LLASAMGVGGMYDSLEAAPPSSAGTTTKTVAALDGESNEDDWRRKSVGQERTFYKLKNRM 520
Query: 201 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 260
E +A+ + L + E L A E L + LKLK SF V+ + +L Y ++D
Sbjct: 521 ELQAIAHMNLRQSHETLVA----EDLLCSQVVLKLKHRSFHVKQHSKSLNLY---TDDYE 573
Query: 261 KHASVLLKAELPV-----SLRLIGLRVTQFNED--------------KVRAPSDPTQKTL 301
L LPV RL+G+R+ + K A ++ TQ TL
Sbjct: 574 VLRRALDDLLLPVVDDFAKFRLLGIRLEKLRRRPQNSGAGGAIILTVKSTAEAESTQPTL 633
Query: 302 TNFMTSGHAS 311
++F AS
Sbjct: 634 SHFFARQSAS 643
>gi|379796249|ref|YP_005326248.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873240|emb|CCE59579.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 356
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 152/287 (52%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI T +++ K L +F + + G+
Sbjct: 176 MALDIGDFPGVGKASKKVMHD-HGIFTGKDLYNKSEFELIHLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS DI A +L + V +RLIG+ V
Sbjct: 293 YQFETLSKQMSLRDSVSSENDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>gi|417903965|ref|ZP_12547796.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
gi|341848294|gb|EGS89459.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
Length = 356
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDK-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|86156570|ref|YP_463355.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773081|gb|ABC79918.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 418
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 158/300 (52%), Gaps = 17/300 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDEAYLDITEVC 57
+P AR+LCP+ +F+P F +Y S+L+R+VF +Y P SLDEA+LD+T
Sbjct: 65 LPTARARRLCPDGVFLPPRFGRY---SELSRRVFDVYRRYTPLVEPLSLDEAFLDVT-AS 120
Query: 58 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 117
R G +IA ++ +V E GL SAGVA ++ AK+ +D+ KP+G V+P V
Sbjct: 121 RALHGGGPDIARAIKAAVRGECGLAVSAGVADVKMAAKIATDLGKPDGLVVVPPG--GVA 178
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLG 176
F++ LP+ ++ G+G+VTE LR + G+ T ++ + S L A + A ++ G
Sbjct: 179 AFLAPLPVGRLWGVGEVTEAALRRI-GVATIGDLARMPESALAAALGPTHARGLRALACG 237
Query: 177 LGSTNTPQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
KS+ +E TF +D + L R+L A ++ ++ GL G +TL
Sbjct: 238 EDPREVVPDEEAKSVGAEDTFD--QDLLGRPALERELLAQAGTVARRLRAAGLAGHVVTL 295
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRA 292
K+K A F + TR VTL++ I A + L + +L +RL G+ V+ F D+ R
Sbjct: 296 KVKYADFTLVTRRVTLERATDDDRAIFDAACAQLARVDLRRPVRLTGISVSGFAGDEERG 355
>gi|121606049|ref|YP_983378.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
gi|120595018|gb|ABM38457.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
Length = 431
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 148/312 (47%), Gaps = 15/312 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF + +S L + + P +DE Y+D T V + G
Sbjct: 111 AAKLCPQAIVLPVDFDEIRRFSRLFKSTIAEVAPLMQDRGIDEVYIDFTGVPGGQREGGR 170
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ +++E+ GLTCS GVAPN+LLAK+ S+ NKPNG ++ + T I L +
Sbjct: 171 ALARLIQRAIFEKTGLTCSIGVAPNKLLAKMASEFNKPNGISIVREADL--QTLIWPLNV 228
Query: 126 RKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS---- 179
RKI GIG K E + R GI T E+ L + F +T + V G
Sbjct: 229 RKINGIGPKAGEKLAR--LGIQTIGELAALDRQFLISQFGKATGAWMHEVAWGRDDSPVV 286
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + + + ER DKA L + E ++AD+Q++G RT+ +KL+
Sbjct: 287 TESEPVSMSRETTFERDLHAVRDKAELGAIFTRLCEQVAADLQRKGYVARTIGIKLRYDD 346
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAPSDPTQ 298
F + TR T Y + I K A + LK L LRL+G+R + V+A P
Sbjct: 347 FRIATRDQTAPAYTDDARTIRKLAGLCLKRVPLEQRLRLLGVRASAL----VKAGEAPVH 402
Query: 299 KTLTNFMTSGHA 310
+ SG A
Sbjct: 403 EQNWPSAQSGRA 414
>gi|424040926|ref|ZP_17778973.1| DNA polymerase IV [Vibrio cholerae HENC-02]
gi|408891302|gb|EKM29153.1| DNA polymerase IV [Vibrio cholerae HENC-02]
Length = 342
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 151/306 (49%), Gaps = 32/306 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+ R
Sbjct: 49 MPTARALQLCPHLLVVPGRMHVYKQVSQQIRTIFERYTPLIEPLSLDEAYLDVTDSTACR 108
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P ++ V +
Sbjct: 109 G-SATLIAESIRNDIWNELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEK--VQEVV 165
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
LP+ KI G+GKV+ L G CE++ L F A + S G+
Sbjct: 166 DKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW-SRSHGIDD 223
Query: 180 TNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGL 226
R RKS+ ERTFS V EDK LY +L + E D + K+G
Sbjct: 224 REVVVERERKSVGVERTFSENIVTYDECWQVIEDK--LYPELEKRLEKACPDKSIIKQG- 280
Query: 227 RGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF 285
+KLK A F++ T + Q + + +L+ +LK + +RL+GL V
Sbjct: 281 ------IKLKFADFQLTTIEHIHPQLELDDFKALLRD---ILKRQNGREIRLLGLSVMLK 331
Query: 286 NEDKVR 291
E + R
Sbjct: 332 PEQQAR 337
>gi|423349379|ref|ZP_17327035.1| hypothetical protein HMPREF9156_00573 [Scardovia wiggsiae F0424]
gi|393702927|gb|EJD65129.1| hypothetical protein HMPREF9156_00573 [Scardovia wiggsiae F0424]
Length = 466
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 153/302 (50%), Gaps = 20/302 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IF+P D Y S +F + S+DE Y+D++ +
Sbjct: 74 MPAATAHRLCPQGIFLPVDMQYYRSMSSQVFGIFARITDRIEKVSVDECYMDVSGALLQW 133
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
EIA +R +V G+TCS G+A N+L+AK+ S KP+G ++P R A FI
Sbjct: 134 K-DPREIAAWIRQTVKRRIGVTCSVGIASNKLIAKLASTNAKPDGMLMIPQSRQA--EFI 190
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+PIR I GIG TE L +GI+T +++ + SL A+ S + A + GLG
Sbjct: 191 QMMPIRAIPGIGPSTERAL-SAWGISTVKQLADMSISSLTSALRSAAHARYLYQAARGLG 249
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEI-AEMLSADMQKEGLRGRTLTLKLKT 237
S+ + KSI +ERTF+ + L L + +++ ++++ L RT+T+KL+
Sbjct: 250 SSGVVVSAAEKSIGAERTFAEDTNSWLKISGLLRWCCDDVASTLRRKKLYARTVTVKLRL 309
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK-------------AELPVSLRLIGLRVTQ 284
+ ++++T+ + ++S+ I + LL AE+P +RL G+ +
Sbjct: 310 SDLSHISKSLTVTQPMNSAAQIYPISRQLLARLLKMQQPEKGKDAEVPRLIRLAGVSTSH 369
Query: 285 FN 286
F+
Sbjct: 370 FS 371
>gi|238060265|ref|ZP_04604974.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
gi|237882076|gb|EEP70904.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
Length = 419
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 150/305 (49%), Gaps = 13/305 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR LCP +++P DF +YT S ++F P SLDEA+LD+ R
Sbjct: 78 MPIMRARSLCPHAVYLPPDFAQYTAASRAVMQIFRDVTPLVEPLSLDEAFLDVAGARRLF 137
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G IA +R V +E GLTCS GVAP++ +AK+ S KP+G V+P DR V+ F+
Sbjct: 138 GPPA-RIARSIRARVADEQGLTCSVGVAPSKFVAKLGSTRAKPDGLLVVPADR--VLDFL 194
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
LP+ + G+G+ + LR G+ T ++ + +L + A + G
Sbjct: 195 RPLPVDALWGVGERSAETLRR-LGLATIGDLAEAPYGMLRKALGEAAAAHLHGLAQGRDP 253
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ KSI +E TF D + R L +AE + A +++ G GRT+++K++TA
Sbjct: 254 RRVTPEQVEKSIGAEVTFDADVADPLEIRRALLALAEKVGARLRRAGQVGRTVSIKVRTA 313
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNEDKVRAPSDPT 297
F R+ TL ++ + A L A P +RL+G+R+ AP+ T
Sbjct: 314 DFRTVNRSRTLDVATDTARETFDTAWALYTALDPSDRIRLVGVRMEGL------APAGQT 367
Query: 298 QKTLT 302
+ LT
Sbjct: 368 PQQLT 372
>gi|300313613|ref|YP_003777705.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
gi|300076398|gb|ADJ65797.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
Length = 384
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 152/305 (49%), Gaps = 18/305 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +L P+ I +PTDF Y YS L ++ P +DE Y+D++ +
Sbjct: 85 AAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDRGIDEIYIDLSAWSD----TAP 140
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 124
E+A +++ +V+ LTCS GVAPN++LAK+ S+++KPNG +L P D + I LP
Sbjct: 141 EVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTILTPAD---IERRIWPLP 197
Query: 125 IRKIGGIG-KVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADFFLSVGLGLGSTNT 182
+RKI GIG K E + GI+T ++ LL A F S A++ V G+
Sbjct: 198 VRKINGIGPKAAEKL--SALGIDTVADLAGAAPDLLRAHFGRSYAEWLGRVAQGVDDRPV 255
Query: 183 PQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
KSIS E TF D+A L + L+AD+ ++G GRT+ +KLK A
Sbjct: 256 QTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKGYVGRTIGIKLKYA 315
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFN-EDKVRAPSDP 296
F TR VTL + I + A LK L LRL+G+RV + +D+ A S
Sbjct: 316 DFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVGALSKKDEQAAASHA 375
Query: 297 TQKTL 301
Q L
Sbjct: 376 VQAEL 380
>gi|315660146|ref|ZP_07913003.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
gi|315494827|gb|EFU83165.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
Length = 359
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 153/288 (53%), Gaps = 13/288 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP+ +V + KY S+ +F Y SLDEAYLDIT + R
Sbjct: 59 MPMSQAHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+S +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V +
Sbjct: 118 DLSASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYENVHKIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK +E I+ GI +++ QK L +F + + G+
Sbjct: 176 MALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY-NKARGIDD 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D +L +K+ E++ + + K +T+T+K+KT
Sbjct: 234 SPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 282
FE ++ ++L+ I S DI + + +L AEL +RLIG+ V
Sbjct: 293 FKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLIGVTV 339
>gi|281492632|ref|YP_003354612.1| DNA polymerase IV [Lactococcus lactis subsp. lactis KF147]
gi|281376296|gb|ADA65787.1| DNA polymerase IV [Lactococcus lactis subsp. lactis KF147]
Length = 364
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 159/296 (53%), Gaps = 24/296 (8%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y + AAS+DEAYLD+TE + S I
Sbjct: 75 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDDIEAASIDEAYLDVTE-NKIGAQSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P + + F++ LP
Sbjct: 134 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPEE---ALEFLAKLP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNT 182
+ K G+GK T L + N + LQK L F + + G+ ++
Sbjct: 191 VEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLAERFGVYGWELYQKAN-GIHNSKV 247
Query: 183 PQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ ERT+ LLY +L++I+ +S ++ L+G + LKL+
Sbjct: 248 KNYRERKSVGKERTYG-----KLLYLPDDIKAELSKISGKVSDSLKSHQLKGSIVILKLR 302
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIGLRVTQFNEDK 289
+ F T+ +L + + S E+I + A + L+ + + +RL+G+ VT+F K
Sbjct: 303 YSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYDESLGVRLLGVTVTEFGVQK 358
>gi|87162181|ref|YP_494528.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195793|ref|YP_500603.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|161510117|ref|YP_001575776.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|384862538|ref|YP_005745258.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|416840638|ref|ZP_11903844.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|416846097|ref|ZP_11906377.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|418988982|ref|ZP_13536651.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418994606|ref|ZP_13542240.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|421150671|ref|ZP_15610326.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422744266|ref|ZP_16798233.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|87128155|gb|ABD22669.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203351|gb|ABD31161.1| ImpB/MucB/SamB family superfamily [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|160368926|gb|ABX29897.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|302751767|gb|ADL65944.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|320142358|gb|EFW34172.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|323439836|gb|EGA97552.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|323442999|gb|EGB00620.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|377716116|gb|EHT40300.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377743219|gb|EHT67202.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|394329366|gb|EJE55475.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
Length = 346
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 49 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 108 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 165
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 166 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 223
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 224 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 282
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 283 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 329
>gi|388567220|ref|ZP_10153657.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
gi|388265603|gb|EIK91156.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
Length = 423
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 11/300 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF + S ++V P +DE Y+D T+V + G
Sbjct: 103 AAKLCPQAILLPVDFDEVKRLSRTFKRVIMDIAPVMQDRGVDEVYIDFTDVPGGQREGGR 162
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+A ++ S+++ GLTCS GVAPN+LLAK+ S+ NKPNG V+P D + I LP
Sbjct: 163 VLARLIQKSIFDATGLTCSIGVAPNKLLAKMASEFNKPNGISIVMPED---LQRLIWPLP 219
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVFSHSTADFFLSVGLGLGS---- 179
RK+ G+G + L+ GI+T ++ + L A F S + V G
Sbjct: 220 CRKVNGVGPKADARLQS-HGIHTIGDLAAREPDWLVANFGKSYGAWLHEVAWGRDDRPVV 278
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + + + ER D+A L L E+ E +++D+Q++G RT+ +KL
Sbjct: 279 TESEPVGMSRETTFERDLHAVHDRAELGAILTELCEQVASDLQRKGYLARTIGIKLTYVG 338
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAPSDPTQ 298
F TR +TL + + + I + A LK +L RL+G+R ++ + P Q
Sbjct: 339 FTKVTRDLTLDEPTADAATIRRAAGQCLKRVDLTRRFRLLGVRSSKLVKPGTHEAHGPDQ 398
>gi|340782658|ref|YP_004749265.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340556810|gb|AEK58564.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 7/278 (2%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
AR LCP+ IFV Y S + Y SLDEA+LD+T + G +
Sbjct: 72 ARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTD-GTLAV 130
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+G FV+P +R + F++ LP+
Sbjct: 131 EIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERG--LAFLAPLPV 188
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
K+ G+G T L G+ T ++ + +F V + +
Sbjct: 189 GKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPS 247
Query: 186 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 244
R RKS+ +ERTFS D++++ L E+A ++A +Q L G T+ +K + F T
Sbjct: 248 RQRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLHLAGHTVHIKARFPDFTTVT 307
Query: 245 RAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGL 280
RA T + I S++ I LL +P S+RL+G+
Sbjct: 308 RAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGM 345
>gi|417861785|ref|ZP_12506840.1| DNA polymerase IV [Agrobacterium tumefaciens F2]
gi|338822189|gb|EGP56158.1| DNA polymerase IV [Agrobacterium tumefaciens F2]
Length = 359
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 9/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP+LIFV F Y S R++F +Y P SLDEAYLD+TE +
Sbjct: 61 MPSVTARRKCPDLIFVLPRFDVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGM 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F
Sbjct: 121 EIA-TEIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---F 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +L ++K G+G T +R GI T ++ K + +F ++ G+
Sbjct: 177 VEALAVKKFHGVGPATAERMRR-HGIETGLDLKSKSLGFLQQHFGKSGPYFYNIARGIDE 235
Query: 180 TNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF +D L +L A+ + + + G+T+T+K+K +
Sbjct: 236 RQVRPDRIRKSVGAEDTFIEDIDDLDLAKAELGPFAQKVWRYCEAHDITGKTVTVKIKYS 295
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 286
F TR+ T+ + I + A LL + P +RL+G+ ++ +
Sbjct: 296 DFTQATRSRTVSGAVPDLATIQEMAETLLASVFPFKRPVRLLGVTLSSLS 345
>gi|146092007|ref|XP_001470182.1| putative DNA polymerase kappa [Leishmania infantum JPCM5]
gi|134084976|emb|CAM69374.1| putative DNA polymerase kappa [Leishmania infantum JPCM5]
Length = 753
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 171/372 (45%), Gaps = 70/372 (18%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA----------- 49
MPGFI +LCP+L+ VPTDF S + V +YD + +DE
Sbjct: 282 MPGFIGMRLCPQLVIVPTDFAACRAESAKFKAVVREYDSDAQLLGMDEVMMCLDDYLAHH 341
Query: 50 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 109
++D+T ++ + EE R + E GLT SAG+AP LAK+ S+ KPNGQF +
Sbjct: 342 HMDVTTHAGRFDVAE-RVIEECRRRIAEATGLTVSAGIAPTPTLAKMASNYKKPNGQFAV 400
Query: 110 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 168
R AVM +++S+P+R++ GIGK E +L + GI+T E+ ++ L + + T +
Sbjct: 401 RLFSREAVMNYLASIPVRQVPGIGKSRESVLAGL-GIHTLGEVYEQRHRLFYILTRKTYE 459
Query: 169 FFLSVGLGLG------------STNTPQARF--------------RKSISSERTFSVTED 202
F L+ +G+G S T + RKS+ ERTF +
Sbjct: 460 FLLASSIGIGGMYDSLEAAPSSSAGTTNGKTVAAVDGGSNEDDWGRKSVGHERTFYKLTN 519
Query: 203 K----ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSED 258
+ A+ Y+ L E L+ +EGL + LKLK SF V+ + +L Y E
Sbjct: 520 RMALQAIAYKNLRRSHETLA----EEGLLCSQVVLKLKHRSFHVKQHSKSLNVYTDDHEV 575
Query: 259 ILKHASVLLKAELPV-----SLRLIGLRVTQFNED--------------KVRAPSDPTQK 299
+ + LL +PV RL+G+R+ + K A ++ Q
Sbjct: 576 LRRALDELL---MPVVDDFAEFRLLGVRLEKLRRRPRSDGTGGATTLTVKSAAEAESNQL 632
Query: 300 TLTNFMTSGHAS 311
TL++F T AS
Sbjct: 633 TLSHFFTRQLAS 644
>gi|384550711|ref|YP_005739963.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333560|gb|ADL23753.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 356
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 152/287 (52%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQFIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI T +++ K L +F + + G+
Sbjct: 176 MALDIGDFPGVGKASKKVMHD-HGIFTGKDLYNKSEFELIHLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAEGLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS DI A +L + V +RLIG+ V
Sbjct: 293 HQFETLSKQMSLRDSVSSENDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>gi|385782159|ref|YP_005758330.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|418572807|ref|ZP_13137011.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
gi|364523148|gb|AEW65898.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983970|gb|EHP01102.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
Length = 356
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|349701936|ref|ZP_08903565.1| DNA polymerase IV [Gluconacetobacter europaeus LMG 18494]
Length = 361
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 11/288 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+L+FVP F Y S +F ++ P SLDEAYLD+T +
Sbjct: 62 MPSVTALRKCPDLLFVPPRFDVYRAVSARIHDIFSRFTPLIQPLSLDEAYLDVTHPLQPY 121
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ +R + EE GLT SAGV+ N+ LAK+ SD +KP+GQFV+ RM F+
Sbjct: 122 P-SATAIAQAIRDLIREETGLTASAGVSYNKFLAKLASDYHKPDGQFVI-TPRMGA-DFV 178
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLG 178
+ LP+ + GIG T + GI T ++ Q+ L + H ADF+ + G+
Sbjct: 179 AGLPVEEFHGIGPATAARMH-ALGIRTGLDLRQQP--LSRLLRHFGKAADFYYGIARGID 235
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R R+S+ +E+TF D +A+++ + L G T+T+K+K
Sbjct: 236 ERPVEVNRPRRSVGAEKTFEADIHDWPAACNSVADLSARVWDRCTARSLTGVTVTIKVKY 295
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVT 283
F R T + + + D+ A LL P +RL+G+ V+
Sbjct: 296 NDFRQIVRGRTAAEPVRDAGDLTDRAQALLAPCFPPPRGIRLLGITVS 343
>gi|387131110|ref|YP_006294000.1| DNA polymerase IV [Methylophaga sp. JAM7]
gi|386272399|gb|AFJ03313.1| DNA polymerase IV [Methylophaga sp. JAM7]
Length = 362
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 156/298 (52%), Gaps = 20/298 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFV F Y S R +F +Y SLDEAYLD++
Sbjct: 60 MPCARAYRLCPQAIFVRPRFEAYREVSGQIRDIFWRYASEVEPLSLDEAYLDVSYTADYN 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IA+ ++ + +E LT SAGV+ N+ LAK+ SD++KPNG +V+ +R F+
Sbjct: 120 G-SATLIAKAIKRDILKETRLTASAGVSYNKFLAKIASDMDKPNGLYVIRPERGE--KFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
+LP+ K GIG TE ++ + GI T ++ K + L F + ++ ++ +
Sbjct: 177 ETLPVGKFHGIGPATEAKMKQL-GIETGLDLRNKTLAQLTERFGKA-GHYYFNIARAIDE 234
Query: 180 TNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+R RKS+ E TF SVTE L KL ++AE++ + K+ L RT+T+K
Sbjct: 235 RPVRSSRTRKSLGKETTFAQDITSVTE----LTTKLLDLAEIVLESLAKQKLNARTVTVK 290
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 289
+K + F+ TRA TL I+ + L+ +L A +RL+GL ++ F+ K
Sbjct: 291 VKYSDFQQITRAHTLDHSIALGD--LREVIPMLLARTEAGKNPVRLVGLSLSGFDAGK 346
>gi|21283565|ref|NP_646653.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MW2]
gi|49486714|ref|YP_043935.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSSA476]
gi|57652116|ref|YP_186780.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus COL]
gi|151222045|ref|YP_001332867.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|221141185|ref|ZP_03565678.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253729654|ref|ZP_04863819.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|258422972|ref|ZP_05685871.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|258451039|ref|ZP_05699075.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|262049939|ref|ZP_06022799.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|262053189|ref|ZP_06025347.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|282917242|ref|ZP_06324997.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282923234|ref|ZP_06330915.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283771045|ref|ZP_06343936.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|284024941|ref|ZP_06379339.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 132]
gi|294849444|ref|ZP_06790186.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|297208923|ref|ZP_06925327.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300913020|ref|ZP_07130458.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379081|ref|ZP_07361828.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015099|ref|YP_005291335.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|379021655|ref|YP_005298317.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|384548185|ref|YP_005737438.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|384870436|ref|YP_005753150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|387143483|ref|YP_005731876.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387780958|ref|YP_005755756.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415689555|ref|ZP_11452840.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|417649076|ref|ZP_12298882.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|417654248|ref|ZP_12303972.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|417797059|ref|ZP_12444259.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|417890486|ref|ZP_12534561.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|417897571|ref|ZP_12541501.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|417902413|ref|ZP_12546279.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|418278482|ref|ZP_12892363.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|418282422|ref|ZP_12895196.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|418286830|ref|ZP_12899468.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|418306652|ref|ZP_12918429.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|418316783|ref|ZP_12928216.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|418317606|ref|ZP_12929023.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|418319965|ref|ZP_12931331.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|418561209|ref|ZP_13125706.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|418570061|ref|ZP_13134360.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|418579821|ref|ZP_13143912.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418641460|ref|ZP_13203670.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648524|ref|ZP_13210566.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651462|ref|ZP_13213463.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|418659923|ref|ZP_13221575.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871769|ref|ZP_13426138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875828|ref|ZP_13430080.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418889716|ref|ZP_13443845.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418904230|ref|ZP_13458269.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906834|ref|ZP_13460857.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912523|ref|ZP_13466501.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418926310|ref|ZP_13480207.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929243|ref|ZP_13483128.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418934888|ref|ZP_13488706.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418949246|ref|ZP_13501503.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|418950965|ref|ZP_13503097.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955346|ref|ZP_13507288.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|419773959|ref|ZP_14299943.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|424785854|ref|ZP_18212650.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|440708430|ref|ZP_20889095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443639343|ref|ZP_21123354.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|448741043|ref|ZP_21723015.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|448744750|ref|ZP_21726633.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
gi|22095607|sp|P58964.1|DPO4_STAAW RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81649035|sp|Q6G838.1|DPO4_STAAS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81694161|sp|Q5HEM7.1|DPO4_STAAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044608|sp|A6QIC3.1|DPO4_STAAE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21205006|dbj|BAB95701.1| MW1836 [Staphylococcus aureus subsp. aureus MW2]
gi|49245157|emb|CAG43623.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286302|gb|AAW38396.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
COL]
gi|150374845|dbj|BAF68105.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|253726595|gb|EES95324.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257846759|gb|EEV70774.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|257861281|gb|EEV84093.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|259158916|gb|EEW44002.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|259161947|gb|EEW46529.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|269941366|emb|CBI49763.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282318869|gb|EFB49224.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282593145|gb|EFB98144.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283459639|gb|EFC06730.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|294823581|gb|EFG40008.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|296886413|gb|EFH25342.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|298695234|gb|ADI98456.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|300885798|gb|EFK81005.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304342316|gb|EFM08208.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315196234|gb|EFU26589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|329314571|gb|AEB88984.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|329728616|gb|EGG65046.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|329731471|gb|EGG67834.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|334267648|gb|EGL86106.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|341839478|gb|EGS81059.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|341843119|gb|EGS84350.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|341854960|gb|EGS95820.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|344178060|emb|CCC88542.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830964|gb|AEV78942.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|365165527|gb|EHM57313.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|365170533|gb|EHM61531.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|365171887|gb|EHM62635.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|365228696|gb|EHM69875.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|365240493|gb|EHM81267.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|365245156|gb|EHM85805.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|365246446|gb|EHM86998.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|371969684|gb|EHO87124.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|371985110|gb|EHP02198.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|374363796|gb|AEZ37901.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|375019260|gb|EHS12821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|375025433|gb|EHS18837.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|375025967|gb|EHS19358.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|375033508|gb|EHS26693.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|375367884|gb|EHS71822.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|375369487|gb|EHS73365.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|375371200|gb|EHS74987.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374974|gb|EHS78585.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|377693700|gb|EHT18069.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377721258|gb|EHT45396.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377736928|gb|EHT60941.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377740310|gb|EHT64307.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741462|gb|EHT65450.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377751523|gb|EHT75452.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377762302|gb|EHT86169.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769119|gb|EHT92896.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769370|gb|EHT93140.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383972231|gb|EID88279.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|421955823|gb|EKU08157.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|436504953|gb|ELP40917.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443407154|gb|ELS65714.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|445548151|gb|ELY16405.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|445561950|gb|ELY18136.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
Length = 356
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>gi|422747071|ref|ZP_16800996.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
gi|320139725|gb|EFW31594.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
Length = 346
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 49 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 108 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 165
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 166 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 223
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 224 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 282
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 283 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 329
>gi|381184017|ref|ZP_09892694.1| DNA polymerase IV [Listeriaceae bacterium TTU M1-001]
gi|380316085|gb|EIA19527.1| DNA polymerase IV [Listeriaceae bacterium TTU M1-001]
Length = 356
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 145/289 (50%), Gaps = 9/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCPE IF+ + Y S R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTKQAAKLCPEGIFIHGNMEHYVTVSTQIREIFKRYTDIVEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S IA E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+P ++ TF
Sbjct: 118 GMASATLIAREIQYAIYHELGLTSSAGVSYNKFIAKIASDYKKPAGLTVIPPEKAE--TF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ S+PI K G+GKVT + + GI T +++ H + G +
Sbjct: 176 LESIPIDKFYGVGKVTSEKMHRL-GIKTGKDLKAWSEWDLIREFHKHGYYLYRHVRGRSN 234
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E TF D+ +L + L +E + + K G+T+ LKL+ +
Sbjct: 235 NIVNPHRDRKSVGKETTFERNVVDELVLEKSLMRFSEKIETRLLKIQKHGKTVVLKLRYS 294
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 285
F T+ +TL Y+ + I + LL S +RLIGL VT
Sbjct: 295 DFTTITKRMTLTNYVHDRQMIYEAGLALLNEVYNGSEAIRLIGLTVTNL 343
>gi|253734997|ref|ZP_04869162.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253727179|gb|EES95908.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 346
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 49 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 108 DLPASKIAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 165
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I + G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 166 MTLDIGEFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 223
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 224 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 282
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 283 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 329
>gi|436836274|ref|YP_007321490.1| DNA-directed DNA polymerase [Fibrella aestuarina BUZ 2]
gi|384067687|emb|CCH00897.1| DNA-directed DNA polymerase [Fibrella aestuarina BUZ 2]
Length = 364
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 152/294 (51%), Gaps = 19/294 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP+L+FV F Y S R +F +Y P SLDEAYLD+TE R
Sbjct: 61 MPSSTARRKCPDLLFVKPRFDVYKAVSQQIRAIFAEYTPLIEPLSLDEAYLDVTE-NRPG 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S +IA E++ + E GLT SAGV+ N+ LAK+ SD NKP+G FV+ + A + F+
Sbjct: 120 LASATQIAREIKVKIREATGLTASAGVSYNKFLAKLASDHNKPDGLFVIKPE--AGLAFV 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
SL + + GIG T + + GI T ++ + F+ ++ + +
Sbjct: 178 ESLRVGQFHGIGPATAGKMNQL-GIATGLDLRHQTEAFLVRHFGKMGHFYHAIAHAIDNR 236
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA---DMQKEGLR----GRTLTL 233
R RKS+ SE TF+ L+ + E+ + LS D+ ++ +R GRTLTL
Sbjct: 237 PVRPDRERKSVGSETTFATD-----LF-EWDELTDGLSGPITDLWQDCVRLQTTGRTLTL 290
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
K+K A F+ TR+ + I+S + LL+ +LP+ +RL+G+ ++
Sbjct: 291 KIKFADFQQITRSRSFGSPIASEAQLTYLTHELLRTQLPLPKGVRLLGVSLSNL 344
>gi|441495813|ref|ZP_20978052.1| DNA polymerase IV [Fulvivirga imtechensis AK7]
gi|441440562|gb|ELR73820.1| DNA polymerase IV [Fulvivirga imtechensis AK7]
Length = 347
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 141/263 (53%), Gaps = 11/263 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP+LIFV F Y S+ R +F +Y SLDEAYLD+T ++
Sbjct: 48 MPSSIAARKCPDLIFVRPRFDAYKAVSNQIRDIFFEYTDLVEPLSLDEAYLDVTH-NKKN 106
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA E++ + E GLT SAG++ N+ LAK SD+NKP+G F++ P D A +
Sbjct: 107 MPSATLIAREIKKRIKETTGLTASAGISINKFLAKTASDVNKPDGLFLIAPEDAEA---Y 163
Query: 120 ISSLPIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ L I K GIGKVT E + + GI +++ + V ++ + +
Sbjct: 164 VERLAIEKFFGIGKVTAEKMFK--MGIRNGQDLKRYAEADLVVRFGKAGRYYYRIARAID 221
Query: 179 STNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ +E TF +TE + + ++L +I + L+ M++ +G+TLTLK+K
Sbjct: 222 DREVNPNRIRKSLGAENTFEKDLTELEE-IRKELVDITKTLTMRMERSNTKGKTLTLKVK 280
Query: 237 TASFEVRTRAVTLQKYISSSEDI 259
F+ TR+ T+ K+I + + I
Sbjct: 281 FHDFQQITRSKTITKWIENEKQI 303
>gi|408789869|ref|ZP_11201510.1| DNA polymerase IV [Lactobacillus florum 2F]
gi|408520891|gb|EKK20913.1| DNA polymerase IV [Lactobacillus florum 2F]
Length = 351
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 153/289 (52%), Gaps = 12/289 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+LCP+ +F DFT + SD ++F +Y + +LDEAYLDIT+ R
Sbjct: 52 MPAEQARRLCPQAVFFQPDFTLFRMVSDQIHQIFHEYTDQIESVALDEAYLDITD-NRMN 110
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ + +A L++ ++E+ LTCS G++ + LAK SD KP G ++ + F+
Sbjct: 111 VDNPVWLAHLLQSEIWEKTHLTCSTGISYCKFLAKEASDYQKPAGMTMISEQE--ALPFL 168
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
LPI++ G+GK T I + GI T ++ Q +LL F + V G+
Sbjct: 169 KRLPIQRFRGVGKQTS-IKMEQLGIKTGADLYQLSEALLINQFGKLGYILYRRVR-GIDD 226
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ E TF +TE A + L+ +A+ + + +QK L G+TL LK++
Sbjct: 227 RPVIGQRLRKSLGKEETFRHFLTELSA-MQTVLSRLAKEVCSGLQKSQLHGKTLVLKVRY 285
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVT 283
A F +RTR +T + ++ D L+ A++ + LP +RL+GL VT
Sbjct: 286 ADFTMRTRRLTRSDFFANDVDELQEAAMQILTTLPSKPGGIRLLGLTVT 334
>gi|358336666|dbj|GAA55127.1| DNA polymerase kappa subunit [Clonorchis sinensis]
Length = 822
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 128/239 (53%), Gaps = 29/239 (12%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G + E A E+R ++ LT SAG+ PN L AK+ SD KP+GQF + AV F+
Sbjct: 334 GTTAWEAAREIRFRIFCATRLTASAGLGPNTLTAKIASDWCKPSGQFEVARTSEAVTEFM 393
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG---- 176
LP+RK+ GIG VTE L + FGI TC ++++K +L + S S ++L + +G
Sbjct: 394 RQLPVRKVPGIGHVTERRL-EAFGIRTCRDLIEKRGILWNLSSRSAMGYYLRIAVGHSDD 452
Query: 177 ---------------------LGSTNTPQARF---RKSISSERTFSVTEDKALLYRKLAE 212
L ++ Q R RKS+S ERTF T + L + +
Sbjct: 453 DWLPCSSPEILTRPNGSNVLALSEADSNQGRSEVDRKSMSVERTFPDTSEPEALILRCRQ 512
Query: 213 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 271
++ LS D+++E ++GR+LTLKLK +FE R+R+ L Y + +E I A+ +L+ E+
Sbjct: 513 LSAKLSEDLKEEHVKGRSLTLKLKLDTFENRSRSQMLPDYTNDAEIIATFATEILREEM 571
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 27/96 (28%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF-------------CKYDPN------- 40
+PGF+ +KLCP+L VP DF +YT S + R V C P
Sbjct: 152 LPGFLGKKLCPDLRIVPPDFARYTAASRVVRSVLRPYAAIGLAKDKTCGGPPGSDNGDDH 211
Query: 41 ---FMAASLDEAYLDITEVCRERGISGIEIAEELRT 73
+ ASLDEAYLD+T+ ++R + +++E R+
Sbjct: 212 PVAMVTASLDEAYLDLTQHLKDR----VNLSQEQRS 243
>gi|443919038|gb|ELU39333.1| DNA polymerase IV [Rhizoctonia solani AG-1 IA]
Length = 664
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 135/279 (48%), Gaps = 26/279 (9%)
Query: 36 KYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAK 95
KYDPN +AA DE YL++T VC E S + + +R VY+E GLT S GVAPN K
Sbjct: 177 KYDPNLLAAGCDEGYLNLTSVCEEANESPEVLVQRMRDEVYKETGLTMSCGVAPN----K 232
Query: 96 VCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 155
+CSD+NKPNGQ+++ DR ++ F LP+RK G V H R + + + L
Sbjct: 233 ICSDLNKPNGQYIMSFDRSVILEFTRKLPMRKT--CGDVFTH--RAQLYLLSQQNKLHLH 288
Query: 156 SLLCAVFSHSTADFFLSVGLGLGSTNTPQAR-FRKSISSERTFSVTEDKALLYRKLAEIA 214
SLLCA +L V +T P R R+S+ ERTF+ D +L L +IA
Sbjct: 289 SLLCA---------YLGVH---DNTVAPYTRDSRRSLGYERTFNPQNDSKVLLETLDKIA 336
Query: 215 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 274
E L+ D +K G + L + + R Q D + + LL E P+
Sbjct: 337 EGLAQDCEKRCCIGSGVILSIVPSINTDRVSIFPSQATAQMDNDQGRSITELLVKEFPLC 396
Query: 275 LRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKK 313
LRL+GLR+T + K + T L F G K
Sbjct: 397 LRLMGLRLTNLKDLK-----EDTNAGLKRFWAQGPGVSK 430
>gi|417897786|ref|ZP_12541714.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
gi|341849861|gb|EGS90998.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
Length = 356
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I + G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGEFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>gi|197120569|ref|YP_002132520.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. K]
gi|196170418|gb|ACG71391.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. K]
Length = 418
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 157/298 (52%), Gaps = 13/298 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDEAYLDITEVC 57
+P AR+LCP+ +F+P F + YS+L+R+VF +Y P SLDEA+LD++
Sbjct: 64 LPTARARRLCPDGVFLPPRFGR---YSELSRRVFDVYRRYTPLVEPLSLDEAFLDVS-AS 119
Query: 58 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 117
R +G +IA ++ +V E GL SAGVA ++ AK+ +D+ KP+G V+P V
Sbjct: 120 RALHGTGPDIARAIKAAVRGECGLAVSAGVAEVKMAAKIATDLGKPDGLVVVPAG--GVA 177
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLG 176
F++ LP+ ++ G+G+VTE LR + G+ T ++ + S L A + A ++ G
Sbjct: 178 AFLAPLPVGRLWGVGEVTEATLRRI-GVATIGDLARMPESALAAALGPTHARGLRALARG 236
Query: 177 LGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ KS+ +E TF + L R+L A + ++ GL G +TLK+
Sbjct: 237 EDAREVVPDEEAKSVGAEDTFDHDLLGRPALERELLAQAGTVGRRLRAAGLAGHVVTLKV 296
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKVRA 292
K A F + TR VTL++ I + A L + +L +RL G+ V+ F D+ R
Sbjct: 297 KYADFTLVTRRVTLERATDDDRAIFEAARAQLERVDLRRPVRLTGISVSGFAGDEERG 354
>gi|374674123|dbj|BAL52014.1| DNA polymerase IV [Lactococcus lactis subsp. lactis IO-1]
Length = 364
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 159/296 (53%), Gaps = 24/296 (8%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y + AAS+DEAYLD+TE + S I
Sbjct: 75 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDDIEAASIDEAYLDVTE-NKIGAQSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P + + F++ LP
Sbjct: 134 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPEE---ALEFLAKLP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNT 182
+ K G+GK T L + N + LQK L F + + G+ ++
Sbjct: 191 VEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLAERFGVYGWELYQKAN-GIHNSKV 247
Query: 183 PQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ ERT+ LLY +L++I+ +S ++ L+G + LKL+
Sbjct: 248 KNYRERKSVGKERTYG-----KLLYLPDDIKAELSKISGKVSDSLKSHQLKGSIVILKLR 302
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIGLRVTQFNEDK 289
+ F T+ +L + + S E+I + A + L+ + + +RL+G+ VT+F K
Sbjct: 303 YSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYDESLGVRLLGVTVTEFGVPK 358
>gi|365920653|ref|ZP_09444978.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
gi|364577797|gb|EHM55045.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
Length = 354
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 139/286 (48%), Gaps = 10/286 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP +I VP F Y S R + SLDEAYLD+++ ERG S
Sbjct: 64 ALQLCPHVILVPPRFETYRAVSLQIRALMLAITDLVEPLSLDEAYLDVSDSPHERG-SAT 122
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IAE LR + GLT SAGV+ N++LAK+ SD+NKP+G V+P F +SLPI
Sbjct: 123 RIAERLRAEIRAATGLTASAGVSYNKMLAKIASDLNKPDGLAVIPPAEGP--AFAASLPI 180
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQ--KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+ GIGK T + GI T ++L+ SL A H DF+ + G+
Sbjct: 181 ERFHGIGKATAAHMH-ALGIKTGADLLRFSAESLRQAFGKH--GDFYYHMARGIDLRPVE 237
Query: 184 QARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R RKSI SE TF E LY+ L + AD+QK L TLT+KLK F
Sbjct: 238 PTRERKSIGSETTFIHDLEGIPALYQALLAQNQDAFADVQKRHLHPHTLTIKLKYHDFSQ 297
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNE 287
TR+ ++ + D + LL P +RL+G+ + E
Sbjct: 298 ITRSRSVSTPFTRENDAHYWIARLLHDIAPTKPVRLVGVTYSGLQE 343
>gi|334365065|ref|ZP_08514033.1| DNA polymerase IV [Alistipes sp. HGB5]
gi|313158762|gb|EFR58149.1| DNA polymerase IV [Alistipes sp. HGB5]
Length = 358
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 152/282 (53%), Gaps = 13/282 (4%)
Query: 5 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 64
+A++LCP LIFVP F Y S R VF Y SLDEA+LD+T + S
Sbjct: 62 LAKRLCPNLIFVPARFDVYKEVSRQIRAVFRDYTELVEPLSLDEAFLDVTHLR-----SA 116
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
A E++ + E GLT SAG++ N++LAK+ SD KP+G F +P + + F+++LP
Sbjct: 117 TLAAREIKARILAETGLTASAGISVNKMLAKIASDYRKPDGLFTIPPGQ--IEEFVAALP 174
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
I + GIG+VT + + GI+T ++ L+ + L F + ++ G+
Sbjct: 175 IERFFGIGEVTARKMHGM-GIHTGADLRLRDEAELVRHFGKAGHSYY-GYARGIDEREVT 232
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R RKS+ +E TF+ T+D+ L +L+ + E + + + +G+T+ LKLK +F
Sbjct: 233 PNRIRKSLGAETTFAEDTDDREQLRLELSAVREEVWNRLMRHEFKGKTVVLKLKFDNFRQ 292
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 282
TR+ TL ++S+E + + + LL A +RLIGL V
Sbjct: 293 ITRSKTLFAPVNSAETLRQVSEELLAAVDFRGRKIRLIGLTV 334
>gi|187931836|ref|YP_001891821.1| DNA polymerase IV [Francisella tularensis subsp. mediasiatica
FSC147]
gi|226738233|sp|B2SH34.1|DPO4_FRATM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187712745|gb|ACD31042.1| DNA-damage inducible protein P [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 349
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 157/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ G+ TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKST-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + + L++ + +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRITEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 292 FTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKQNHPIRLIGIGV 336
>gi|254372939|ref|ZP_04988428.1| hypothetical protein FTCG_00510 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570666|gb|EDN36320.1| hypothetical protein FTCG_00510 [Francisella novicida GA99-3549]
Length = 349
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 160/298 (53%), Gaps = 25/298 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R++F + SLDEAYLD+T+V +
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASSIIREIFHSFTDKVEPLSLDEAYLDVTDVTVYK 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT S GVAPN+LLAK+ SDINKPNG +V+ ++ V F+
Sbjct: 120 N-SATLIAQAIKQEIFNKTGLTGSTGVAPNKLLAKIASDINKPNGLYVITPEQ--VNDFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV-----FSHSTADFFLSVGL 175
+LP++K+ G+GKV++ L+ + + TC + LQ+ SL V F S ++
Sbjct: 177 KNLPVKKLFGVGKVSQEKLKSM-NVETCSD-LQQLSLATLVDKFGKFGSSLYNY----AR 230
Query: 176 GLGSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-L 231
G+ + R RKSIS E T+ ED L KL + + L++ + E + +
Sbjct: 231 GIDNREVNPVRIRKSISVENTY--LEDLKTLEACLEKLPSLYDKLTSRITDEHYKSIIGI 288
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRVTQFNE 287
+K F +T + K + ++++K+ + L K P+ L IG+R+ + N+
Sbjct: 289 VVKFTDTKFN-KTSLTRVSKIL--DKEVIKNLIIELHQKQNHPIRLIGIGVRLGEVND 343
>gi|121595598|ref|YP_987494.1| DNA-directed DNA polymerase [Acidovorax sp. JS42]
gi|120607678|gb|ABM43418.1| DNA-directed DNA polymerase [Acidovorax sp. JS42]
Length = 399
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 140/285 (49%), Gaps = 13/285 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ + +P DF Y YS L ++V P +DE Y+D T V + G
Sbjct: 97 AARLCPQAVLLPVDFAAYRRYSRLFKEVILSIAPVMEDRGVDEVYIDFTRVAGGQRDGGR 156
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+A ++ S+++ GLTCS GVAPN+L+AK+ S+ NKPNG V P D + I L
Sbjct: 157 VLARLIQKSIFDATGLTCSIGVAPNKLIAKMASEFNKPNGISIVQPGD---LQPLIWPLD 213
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS---- 179
RKI G+G E L GI T E+ Q+ L F S + G
Sbjct: 214 CRKINGVGPKAEARLL-AHGIRTIGELAQRPLPWLMQQFGRSYGAWLHDAAWGRDERAVV 272
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T + + + ER D+A L R + E ++ D+ +G GRT+ +KL+
Sbjct: 273 TESEPVSMSRETTFERDLHAVHDRAELGRIFTALCEQVAGDLIAKGYAGRTIGIKLRYDD 332
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRV 282
F++ TR T+ + + I + A + LK +P++ LRL+G+RV
Sbjct: 333 FKIATRDQTVADFTQDAATIRRVAGLCLK-RVPLTKRLRLLGVRV 376
>gi|300788116|ref|YP_003768407.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|384151547|ref|YP_005534363.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|399539999|ref|YP_006552661.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|299797630|gb|ADJ48005.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|340529701|gb|AEK44906.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|398320769|gb|AFO79716.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
Length = 404
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP LI +P Y S +F + P SLDEA+LD++ R
Sbjct: 72 MPFSTAKRLCPHLINIPPTSGLYGEVSRGVMGIFRELTPLVEPLSLDEAFLDVSGALRRL 131
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G + + ++R+ V E G+TCS GVA + +AK+ S + KP+G V+P + F+
Sbjct: 132 GATPASLGAQIRSRVAAEHGITCSVGVAKVKFVAKLASGMAKPDGMVVVPAAE--TLAFL 189
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ------KGSLLCAVFSHSTADFFLSVG 174
LP+ + G+G TE LR G+ T ++ K SL A H +
Sbjct: 190 HPLPVSALWGVGARTEEHLRR-LGLATIADVAAFPPERLKKSLGTAAGEH-----LYRLA 243
Query: 175 LGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
G+ + KSI +E TF V D+A L +L +AE + A ++ GLRGRT+++
Sbjct: 244 HGVDERSVVAESAEKSIGAEHTFDVDRHDRASLGLELLRLAERVGATLRGRGLRGRTVSI 303
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFN 286
K++ A F TRA TL + +I A LL P ++RLIG+RV +
Sbjct: 304 KVRFADFRTITRARTLVSATDVAREIHAVAVALLAEHAPTGAVRLIGVRVEGLD 357
>gi|254514854|ref|ZP_05126915.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR5-3]
gi|219677097|gb|EED33462.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR5-3]
Length = 373
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 157/316 (49%), Gaps = 21/316 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPG AR+ CP+L+FV F Y S ++F +Y SLDEAYLD+T
Sbjct: 64 MPGVTARRRCPQLLFVKPRFDVYRSVSRQLHEIFARYTDLIEPLSLDEAYLDVTADTAGM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE +R + +E LT SAGV+ N+ +AKV SD NKP+G FV+ A F+
Sbjct: 124 G-SATAIAEAIRRDIRDELCLTASAGVSYNKFIAKVASDQNKPDGVFVVRPGEGA--DFV 180
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
++LP R+ G+G T + GI++ ++ + +A + G
Sbjct: 181 AALPARRFYGVGPRTAERM-STLGIHSGADIRAQSLHFLEQHFGKSAQYLYRASRGEDYR 239
Query: 181 NTPQARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKSI ERT++ ED L L + L I +++ + + GRT+TLK+K
Sbjct: 240 PVRPDRQRKSIGGERTYA--EDLLLDEDLRKALEHIIDIVWERIDRHRSLGRTVTLKVKY 297
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT---------QFN 286
A F+ TRA ++ + + D + + LL+A LPV +RL+GL ++ N
Sbjct: 298 ADFQQITRARSVSPPVETRADFERLSRELLEALLPVPKGVRLLGLTLSGLEAPQAAGSLN 357
Query: 287 EDKVRAPSDPTQKTLT 302
V PS P Q++L
Sbjct: 358 PGVVAEPS-PVQESLA 372
>gi|390947019|ref|YP_006410779.1| nucleotidyltransferase/DNA polymerase [Alistipes finegoldii DSM
17242]
gi|390423588|gb|AFL78094.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes finegoldii DSM 17242]
Length = 358
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 152/282 (53%), Gaps = 13/282 (4%)
Query: 5 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 64
+A++LCP LIFVP F Y S R VF Y SLDEA+LD+T + S
Sbjct: 62 LAKRLCPNLIFVPARFDVYKEVSRQIRAVFRDYTELVEPLSLDEAFLDVTHLR-----SA 116
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
A E++ + E GLT SAG++ N++LAK+ SD KP+G F +P + + F+++LP
Sbjct: 117 TLAAREIKARILAETGLTASAGISVNKMLAKIASDYRKPDGLFTIPPGQ--IEEFVAALP 174
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
I + GIG+VT + + GI+T ++ L+ + L F + ++ G+
Sbjct: 175 IERFFGIGEVTARKMHGM-GIHTGADLRLRDEAELVRHFGKAGHSYY-GYARGIDEREVT 232
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R RKS+ +E TF+ T+D+ L +L+ + E + + + +G+T+ LKLK +F
Sbjct: 233 PNRIRKSLGAETTFAEDTDDREQLRLELSAVREEVWNRLMRHEFKGKTVVLKLKFDNFRQ 292
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 282
TR+ TL ++S+E + + + LL A +RLIGL V
Sbjct: 293 ITRSKTLFAPVNSAETLRQVSEELLAAVDFRGRKIRLIGLTV 334
>gi|349575619|ref|ZP_08887530.1| DNA-directed DNA polymerase IV [Neisseria shayeganii 871]
gi|348012887|gb|EGY51823.1| DNA-directed DNA polymerase IV [Neisseria shayeganii 871]
Length = 394
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 130/251 (51%), Gaps = 20/251 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG- 64
AR+ CP+L+ +P DF +Y S +F ++ SLDEAYLD++ R +SG
Sbjct: 95 ARRRCPQLVCLPPDFARYRAVSAQIHAIFRRHTDIIEPLSLDEAYLDVS-----RPLSGH 149
Query: 65 ---IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 121
+IA+ +R + E GLT SAGVAPN+L+AK+ SD KPNGQ V+ ++ V+ F+
Sbjct: 150 RYARDIAQAIRAEIRAETGLTASAGVAPNKLIAKIASDWRKPNGQTVVAPEQ--VLRFLH 207
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS----LLCAVFSHSTADFFLSVGLGL 177
LP KI G+GKVT + D GI T +M Q L + H D + G+
Sbjct: 208 PLPPAKIPGVGKVTAAKMAD-LGIRTIADMAQWPREHLVLHFGRYGHRLYD----LARGI 262
Query: 178 GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R K +S E T + A L L IAE + + ++ R LTLKLKT
Sbjct: 263 DERPVRPEREYKQVSVEHTLAQDVPLAGLLPMLPGIAEEVWRQLARKRYAARRLTLKLKT 322
Query: 238 ASFEVRTRAVT 248
A F+V TR+ T
Sbjct: 323 ADFQVLTRSAT 333
>gi|302346217|ref|YP_003814515.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
gi|302150325|gb|ADK96586.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
Length = 366
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 154/287 (53%), Gaps = 19/287 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A++ CP+LI V + F +Y S VF +Y SLDEA+LD++E ++GI
Sbjct: 61 AKRRCPQLIVVSSHFDRYKEVSRQIHAVFHEYTDLVEPISLDEAFLDVSE--NKKGIELA 118
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
++IA+E++ ++E LT SAG++ N+LLAK+ SD+ KPNG F + DR + FI LP
Sbjct: 119 VDIAKEIKQKIFERTSLTASAGISYNKLLAKIASDMRKPNGIFTVHPDR--ALDFIGKLP 176
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
I K+ G+G T + + G+ T E++ + L VF + + G+ +
Sbjct: 177 IEKLWGVGPKTAERMHSM-GVFTGEQLREISREHLVQVFG-KMGNVYYDFSRGIDNRPVI 234
Query: 184 QARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
A RKS+ ERTF E K ++ +L I L ++ + +GRTLTLKLK +
Sbjct: 235 VAYERKSVGCERTFLEDLHVESKIII--ELYHITLELVERIKTKDFKGRTLTLKLKWDAT 292
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 283
TR++T K + + +DIL A LLK P+ RL+GL V+
Sbjct: 293 TQITRSLTQDKILRTKDDILPLAKQLLKDTDYHNRPI--RLMGLSVS 337
>gi|146317857|ref|YP_001197569.1| DNA polymerase IV [Streptococcus suis 05ZYH33]
gi|145688663|gb|ABP89169.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 05ZYH33]
Length = 337
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 160/298 (53%), Gaps = 35/298 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE + GIS
Sbjct: 57 AYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NKLGISSA 114
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++ +SL
Sbjct: 115 VKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL---ASL 171
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
P+ K G+GK T L ++ G+ T +++L ++ D F G L G
Sbjct: 172 PVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDLYRKARG 223
Query: 179 STNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRGRT 230
+N+P R RKS ERT+ + LLYR +L + + ++A +++ G +GRT
Sbjct: 224 ISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRNGKKGRT 278
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 286
+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ VT F
Sbjct: 279 IVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKGIRLLGVTVTNFQ 336
>gi|402826938|ref|ZP_10876079.1| DNA-directed DNA polymerase [Sphingomonas sp. LH128]
gi|402259526|gb|EJU09748.1| DNA-directed DNA polymerase [Sphingomonas sp. LH128]
Length = 367
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 150/300 (50%), Gaps = 27/300 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
+P A + CPELIFVP F Y S +VF +Y SLDEAYLD+T +
Sbjct: 61 LPSVTALRRCPELIFVPPRFEVYKDVSRQIHEVFARYTDLIQPLSLDEAYLDVT--ANKS 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI + A+ +R ++ +E GLT SAG++ N+ LAK+ SD KPNGQF + D +
Sbjct: 119 GIETAWRTAKAIRKAILDETGLTASAGISYNKFLAKLASDHRKPNGQFAVTPDMGE--AW 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP+ + G+G VT ++ + GI T + K S+A+++ ++ G+
Sbjct: 177 VETLPVSRFHGVGPVTAEKMKRL-GIETGAHLRAKSLGFLQQNFGSSAEWYFAIARGVDD 235
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA--DMQKEGLR--------GR 229
R RKS SE TF R L E E+ + M + R GR
Sbjct: 236 RPVNPNRVRKSCGSETTFD---------RDLTEPGEIEAGILRMADDVWRWCEARETFGR 286
Query: 230 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
T+T+K+K F+ TR+ + I + E++ + A L++ LP +RL+G+ V+ F E
Sbjct: 287 TVTVKIKYGDFQQITRSRSQPSVIVTQENLQRCAIDLVRTVLPPIKGIRLVGVTVSNFGE 346
>gi|440735334|ref|ZP_20914941.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436430703|gb|ELP28061.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
Length = 356
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGETAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>gi|160900719|ref|YP_001566301.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
gi|160366303|gb|ABX37916.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
Length = 437
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 147/285 (51%), Gaps = 13/285 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ I +P DF + +S + +++ P +DE Y+D T+V + G
Sbjct: 117 AARLCPQAILLPVDFAEVRRFSRMFKEIIVSIAPLMEDRGVDEVYIDFTDVPGGQREGGR 176
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+A ++ ++ + GLTCS GVAPN+LLAK+ S+ NKPNG V P+D AV I L
Sbjct: 177 VLARLIQKTITDATGLTCSIGVAPNKLLAKMASEFNKPNGISIVQPDDLQAV---IWPLA 233
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGS--- 179
RKI GIG + L+ + GI T E L K SL L F + ++ V G
Sbjct: 234 CRKINGIGPKADAKLQSL-GIQTIGE-LAKQSLPQLVQWFGRAYGNWLHGVSWGRDERPV 291
Query: 180 -TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
T++ + + ER D+A L ++ E L+ D+Q++G GRT+ +KL+
Sbjct: 292 VTHSEPVSMSRETTFERDLHAVRDRAELSAIFTDLCERLAQDLQRKGYMGRTVGIKLRYD 351
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 282
F+ TR TL+ ++ + + + A LK L LRL+G+RV
Sbjct: 352 DFKTATRDHTLELPMADAATLRRAAGQCLKRVPLAKRLRLLGVRV 396
>gi|373956101|ref|ZP_09616061.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
gi|373892701|gb|EHQ28598.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
Length = 368
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 159/308 (51%), Gaps = 9/308 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP IFV F Y S R++F +Y SLDEAYLD+T
Sbjct: 66 MPSKKALQLCPHAIFVRPRFAVYKEVSQQIREIFSRYTDLIEPLSLDEAYLDVTNDKLNI 125
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTF 119
G S IEIA++++ ++ +E LT SAGV+ N+ +AK+ SDINKPNG +F+ P+ + F
Sbjct: 126 G-SAIEIAKQIKQAIQDELRLTASAGVSINKFVAKIASDINKPNGLKFIGPS---GIENF 181
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+ K G+GKVT ++ + G++T ++ + F+ + GL +
Sbjct: 182 MELLPVEKFFGVGKVTAEKMKKM-GLHTGADLKKLTEDEMHRHFGKAGRFYYQIVRGLDN 240
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KS+ +E TF+ A + +L +IA ++ +++ L+GRT+TLK+K +
Sbjct: 241 REVQPHRETKSMGAEDTFAYDLTTLAEMNAELDKIAVTVANRLERYQLKGRTVTLKVKYS 300
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRVTQFNEDKVRAPSDP 296
F+ TR + I+ E I A LL E +RL+G+ ++ F E +R D
Sbjct: 301 DFKQITRNQSSAAPIADLESITATAKQLLFTSFEEGQKVRLLGISLSNFGEVILRQKQDK 360
Query: 297 TQKTLTNF 304
L F
Sbjct: 361 QTGQLELF 368
>gi|359727025|ref|ZP_09265721.1| DNA polymerase IV [Leptospira weilii str. 2006001855]
Length = 352
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 158/298 (53%), Gaps = 18/298 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P+ IFVP F Y S+ R++F +Y SLDE YLD+T ++
Sbjct: 49 MPCSKAAQLAPQAIFVPPRFKVYKEVSNRIREIFLEYTDRVEMLSLDEGYLDVT--FNKK 106
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V+
Sbjct: 107 NIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VIA 163
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LP+ G+GKVT ++++ I T +++ K + ++ + G
Sbjct: 164 FIDPLPVSSFHGVGKVTAQKMKEL-EIYTGKDLRAKNIDELVQYFGKMGIYYYKISRGED 222
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E TF + D+ L ++L E+A + +++ G+TLTLK+K
Sbjct: 223 EREVESCRERKSLGAENTFDQDKIDREDLLQQLREVAVEVERRLKERDFAGKTLTLKIKF 282
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQFN 286
F +RTR+ TL + I S++++ A+ L + + ++RL+G+ ++ N
Sbjct: 283 QDFRLRTRSKTLSEPIFSADELYSVAAELFEEFFEIKNGKQVSIKAIRLLGINLSHPN 340
>gi|257869791|ref|ZP_05649444.1| DNA directed DNA polymerase [Enterococcus gallinarum EG2]
gi|257803955|gb|EEV32777.1| DNA directed DNA polymerase [Enterococcus gallinarum EG2]
Length = 374
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 151/288 (52%), Gaps = 15/288 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP +F+P + KY S R++F +Y S+DEAYLD+T V + S I
Sbjct: 80 AFELCPHAVFIPGNHQKYREISQQVREIFGRYTDVIEPVSIDEAYLDVT-VNKINCPSAI 138
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA ++ +++ LTCSAGV+ N+ LAK+ SD +KP G V+P D + F+ LP
Sbjct: 139 KIARMIQQDIWQTTQLTCSAGVSYNKFLAKLSSDFHKPRGLTVVMPED---AVVFLKKLP 195
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
I K GIGK T + ++ GI ++ + + L F + V G+ +
Sbjct: 196 IDKFHGIGKKTVPRMHEL-GIYKGSDLYEWSEMALIQEFGKMGYSLYRKVR-GIHDSPVS 253
Query: 184 QARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
R RKS+ E T+ TED+ + +L +AE + +++ G+T+ LK++ A +
Sbjct: 254 VTRERKSVGKEHTYGNALTTEDQVI--SQLRNLAEEVERSLKRTQKHGKTVVLKVRYADY 311
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
T+ VTL +Y+ E I AS++ + L + +RL+G+ VT +
Sbjct: 312 STITKRVTLPEYMHKKEAIFSQASLIWEEILGIEKGIRLLGITVTNLD 359
>gi|223934355|ref|ZP_03626276.1| DNA-directed DNA polymerase [bacterium Ellin514]
gi|223896818|gb|EEF63258.1| DNA-directed DNA polymerase [bacterium Ellin514]
Length = 368
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 152/281 (54%), Gaps = 12/281 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A++LCP+ F+ Y S+ ++ S+DEAYLD++ VC+
Sbjct: 58 MPSVVAKRLCPDGFFIRPRMDHYRAESNQIMQIVAASGAIIEQVSIDEAYLDLSPVCQRS 117
Query: 61 GI-----SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 115
+ S + +A +L+ ++ E GLT S G+A N+LLAK+ SD NKPNG ++P +R
Sbjct: 118 DLDSSLLSAVPLAAQLKDKIFSERGLTTSIGIASNKLLAKIASDFNKPNGLTLIP-ERDK 176
Query: 116 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVG 174
V+ F+ +PIR I G+G+VTE +L+ G+ T ++ G L V S S G
Sbjct: 177 VL-FLRPMPIRAIPGVGRVTEEMLKKS-GVETIGDLQDFPGDLRSMVGSFGPTLKRFSFG 234
Query: 175 LGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
+T KSISSE TF TED+ +L L E AE ++A ++++ + +T+ +
Sbjct: 235 EDNRQLDT--GDVIKSISSENTFLKDTEDRKILKTCLREQAEEIAAKLKRKQIGAQTIQV 292
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 274
KL+ + F TR +++++ I+ + DI + LL E VS
Sbjct: 293 KLRYSDFTTLTRQLSVEEPITEAADIYRLGCYLLAREKLVS 333
>gi|146320049|ref|YP_001199760.1| DNA polymerase IV [Streptococcus suis 98HAH33]
gi|253751099|ref|YP_003024240.1| DNA polymerase IV [Streptococcus suis SC84]
gi|253753000|ref|YP_003026140.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|253754823|ref|YP_003027963.1| DNA polymerase IV [Streptococcus suis BM407]
gi|386577190|ref|YP_006073595.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386581236|ref|YP_006077640.1| DNA polymerase IV [Streptococcus suis SS12]
gi|386587467|ref|YP_006083868.1| DNA polymerase IV [Streptococcus suis A7]
gi|403060877|ref|YP_006649093.1| DNA polymerase IV [Streptococcus suis S735]
gi|189044615|sp|A4VZ21.1|DPO4_STRS2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145690855|gb|ABP91360.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 98HAH33]
gi|251815388|emb|CAZ50961.1| DNA polymerase IV [Streptococcus suis SC84]
gi|251817287|emb|CAZ55017.1| DNA polymerase IV [Streptococcus suis BM407]
gi|251819245|emb|CAR44505.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|292557652|gb|ADE30653.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|353733382|gb|AER14392.1| DNA polymerase IV [Streptococcus suis SS12]
gi|354984628|gb|AER43526.1| DNA polymerase IV [Streptococcus suis A7]
gi|402808203|gb|AFQ99694.1| DNA polymerase IV [Streptococcus suis S735]
Length = 355
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 160/298 (53%), Gaps = 35/298 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE + GIS
Sbjct: 75 AYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NKLGISSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++ +SL
Sbjct: 133 VKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL---ASL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
P+ K G+GK T L ++ G+ T +++L ++ D F G L G
Sbjct: 190 PVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDLYRKARG 241
Query: 179 STNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRGRT 230
+N+P R RKS ERT+ + LLYR +L + + ++A +++ G +GRT
Sbjct: 242 ISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRNGKKGRT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 286
+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ VT F
Sbjct: 297 IVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKGIRLLGVTVTNFQ 354
>gi|418645978|ref|ZP_13208094.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
gi|375022047|gb|EHS15540.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
Length = 356
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGVYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|335042079|ref|ZP_08535106.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
gi|333788693|gb|EGL54575.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
Length = 362
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 20/295 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LC +FVP F Y S+ R +F +Y SLDEAYLD+T
Sbjct: 60 MPCSRAYRLCSHALFVPPRFDAYREVSNQIRDIFWRYATEVEPLSLDEAYLDVTYTEAFN 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IA+ ++ + +E LT SAGV+ N+ LAK+ SD++KPNG +V+ ++ F+
Sbjct: 120 G-SATLIAQAIKREILQETRLTASAGVSYNKFLAKIASDMDKPNGLYVIRPEQGE--AFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
++LP+ K GIG TE + ++ GI+T +++ +K + L F + ++ ++ +
Sbjct: 177 AALPVGKFHGIGPATETKMHNL-GIHTGKDLREKSLTELTERFGKA-GQYYYNIARAIDE 234
Query: 180 TNTPQARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
R RKS+ E TF S+ E L KL ++AE + + K+ L+ RT+T+K
Sbjct: 235 RPVRSQRIRKSLGKETTFAEDIHSIPE----LTAKLLDLAERVFESLVKQNLKARTITVK 290
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVS-LRLIGLRVTQFN 286
+K A F+ TRA + + I ++ LK LL K E + LRL+GL ++ F+
Sbjct: 291 VKYADFQQVTRAHSTEHIIQLTD--LKQIIPLLLEKTEAGIKPLRLVGLSMSGFD 343
>gi|436840478|ref|YP_007324856.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432169384|emb|CCO22752.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 389
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 146/288 (50%), Gaps = 8/288 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP+L V +Y SD KV Y P AS+DEAYLDIT +
Sbjct: 57 MPVHQALKLCPQLQVVSGTRGRYKEISDQVMKVLGNYSPVVEQASIDEAYLDITGTQKLF 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G ++A+ ++ +Y+ GLT S G+AP + LAK+ SD+NKPNG ++ P++ V F
Sbjct: 117 GPPR-KLAQSIKDDIYKTTGLTASVGIAPVKFLAKIASDLNKPNGISIIEPHE---VEEF 172
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +LP+ KI G+GK L F + ++ + G G+
Sbjct: 173 LKTLPVEKIPGVGKKALPRLH-AFSVKFAADLRKYSPEFWKERFGERGLVLYEKGAGIDP 231
Query: 180 TNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
T KS S+E TF D +L L + +E ++AD++++GL+GRT+TLK+K
Sbjct: 232 TPVTLGGQMKSSSAENTFDDDVSDPHVLKTLLLKQSERIAADIRRKGLKGRTITLKIKFP 291
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQF 285
F TR+ TL S S I K LL E + +RLIG+ ++ F
Sbjct: 292 DFRQITRSKTLDFRTSHSGTIYKTGCKLLDNEGRIGPVRLIGIGISNF 339
>gi|303326238|ref|ZP_07356681.1| DNA polymerase IV [Desulfovibrio sp. 3_1_syn3]
gi|345891911|ref|ZP_08842739.1| hypothetical protein HMPREF1022_01399 [Desulfovibrio sp.
6_1_46AFAA]
gi|302864154|gb|EFL87085.1| DNA polymerase IV [Desulfovibrio sp. 3_1_syn3]
gi|345047771|gb|EGW51630.1| hypothetical protein HMPREF1022_01399 [Desulfovibrio sp.
6_1_46AFAA]
Length = 415
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 151/297 (50%), Gaps = 15/297 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK---YDPNFMAASLDEAYLDITEVC 57
MP AR+LCP+ IFV + YS+L+R + + P AS+DEAYLD +
Sbjct: 53 MPIVTARRLCPQGIFV---HGRRHRYSELSRAIMAALGDFSPLVEPASIDEAYLDAAGLT 109
Query: 58 RERGISGIEIAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMA 115
R G E+ ++ V E GLTCS G AP + LAK+CSD+NKP+G F+L P D
Sbjct: 110 RLFGPLE-ELIARIKDRVAEVTGGLTCSVGAAPVKFLAKICSDVNKPDGVFILRPED--- 165
Query: 116 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 175
F+ L + ++ G+G+ LRD+ GI T ++ +
Sbjct: 166 ADDFLLPLEVGRLPGVGRRMVESLRDL-GIVTVAQLRRYSPEFLEKRYGKWGRALYERAY 224
Query: 176 GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
G+ R KS S+E TF T D+ L R L AE + A +++ L GRT+TLK
Sbjct: 225 GIDPRPVTPERPMKSESAECTFERDTRDREFLVRMLLAHAERVGASLRRHKLSGRTITLK 284
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNEDKV 290
+K A F TR+ TL + +++E I + LL+ P ++RLIGL V+ F E+ V
Sbjct: 285 VKFADFRQITRSRTLAEATNATETIFETGRELLRELKPAQAVRLIGLGVSGFEENPV 341
>gi|357050984|ref|ZP_09112180.1| hypothetical protein HMPREF9478_02163 [Enterococcus saccharolyticus
30_1]
gi|355380609|gb|EHG27745.1| hypothetical protein HMPREF9478_02163 [Enterococcus saccharolyticus
30_1]
Length = 371
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 151/288 (52%), Gaps = 15/288 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP +F+P + KY S R++F +Y S+DEAYLD+T V + S I
Sbjct: 77 AFELCPHAVFIPGNHQKYREISQQVREIFGRYTDVIEPVSIDEAYLDVT-VNKINCPSAI 135
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA ++ +++ LTCSAGV+ N+ LAK+ SD +KP G V+P D + F+ LP
Sbjct: 136 KIARMIQQDIWQTTQLTCSAGVSYNKFLAKLSSDFHKPRGLTVVMPED---AVVFLKKLP 192
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
I K GIGK T + ++ GI ++ + + L F + V G+ +
Sbjct: 193 IDKFHGIGKKTVPRMHEL-GIYKGSDLYEWSEMALIQEFGKMGYSLYRKVR-GIHDSPVS 250
Query: 184 QARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
R RKS+ E T+ TED+ + +L +AE + +++ G+T+ LK++ A +
Sbjct: 251 VTRERKSVGKEHTYGNALTTEDQVI--SQLRNLAEEVERSLKRTQKHGKTVVLKVRYADY 308
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
T+ VTL +Y+ E I AS++ + L + +RL+G+ VT +
Sbjct: 309 STITKRVTLPEYMHKKEAIFSQASLIWEEILGIEKGIRLLGITVTNLD 356
>gi|116873410|ref|YP_850191.1| DNA polymerase IV [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123463973|sp|A0AK80.1|DPO4_LISW6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116742288|emb|CAK21412.1| DNA polymerase IV [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 356
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 153/292 (52%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
G+ S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+ P + A
Sbjct: 118 GMKSATMVARDIQQTIYHELGLTASAGVSFNKFIAKIASDFKKPAGMTVVAPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + A + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEARLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|30249204|ref|NP_841274.1| UMUC family protein [Nitrosomonas europaea ATCC 19718]
gi|30180523|emb|CAD85130.1| UMUC family (DNA-repair) [Nitrosomonas europaea ATCC 19718]
Length = 385
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 15/289 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +L P+ I +P DF Y +YS L + + P+ +DE Y+D++E E
Sbjct: 89 AAQLAPDAILLPADFDTYRHYSRLFKDAIARITPHIEDRGIDEIYIDLSEHPDETA---- 144
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ +V + GL+CS G+APN+LLAK+ SD+ KP+G +L + + I L +
Sbjct: 145 SLASSIKQAVRDATGLSCSIGIAPNKLLAKISSDLEKPDGLTILTH--TDIPNRIWPLSV 202
Query: 126 RKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 183
RKI GIG K E ++R GI E+ + SLL A F S A + G S
Sbjct: 203 RKINGIGPKAEEKLVR--LGIQKIGELAKAELSLLQAHFGRSNAIWLHDSAHGRDSRPVV 260
Query: 184 QARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
+ KSIS E TF V ED+ +L E+ ++ D+Q++G GRT+ +KL+ +
Sbjct: 261 ISSESKSISREATFERDLHVQEDREILSDIFTELCTRVAEDLQRKGYVGRTIGIKLRYEN 320
Query: 240 FEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNE 287
F+ TR +T++ + + I K A L + LRL+G+R++ ++
Sbjct: 321 FQTITRDLTVRNPTADASTIRKAARDCLRRVPFEQKLRLLGVRISGLSK 369
>gi|163790782|ref|ZP_02185208.1| DNA-damage-inducible protein P [Carnobacterium sp. AT7]
gi|159873962|gb|EDP68040.1| DNA-damage-inducible protein P [Carnobacterium sp. AT7]
Length = 377
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 151/287 (52%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP F+ + Y S R +F +Y SLDEAYLD+TE ++ S I
Sbjct: 80 AFELCPHGNFISGHYELYREISKQVRAIFERYTDIIEPLSLDEAYLDVTE-NKKNLTSAI 138
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IA+ ++ +++E LT SAGV+ N+ +AK+ SD +KP G V+P D+ + F+ LPI
Sbjct: 139 YIAKLIQRDIWQEVRLTSSAGVSYNKFIAKLASDYHKPAGITVIPPDK--ALEFLRELPI 196
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 184
K G+GK T + ++ GI T E++ QK + L F + V G+ +
Sbjct: 197 EKFYGVGKKTVEKMHEL-GIYTGEDLYQKDEMELIQRFGRMGYSLYRKV-RGIDNAPVQV 254
Query: 185 ARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
+R RKS+ E T+ TE + L +L IA + +QK G+T+ LK++ ++FE
Sbjct: 255 SRERKSVGRELTYGKNLTTEQEVL--SELRFIANKVQLSLQKNQKHGKTVVLKVRYSNFE 312
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 286
T+ +TL Y+ E+I HA + +S +RL+G+ VT +
Sbjct: 313 TATKRITLPNYVKDGEEIFFHAQNIWDEIGVISRGIRLLGITVTNLD 359
>gi|239814330|ref|YP_002943240.1| DNA-directed DNA polymerase [Variovorax paradoxus S110]
gi|239800907|gb|ACS17974.1| DNA-directed DNA polymerase [Variovorax paradoxus S110]
Length = 416
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 146/283 (51%), Gaps = 9/283 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF + YS ++V + P +DE Y+D T+V + G
Sbjct: 102 AAKLCPQAIILPVDFEEIRKYSRTFKQVIREVAPLMEDRGVDEVYIDFTDVPGGQREGGR 161
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ ++ + GLTCS GVAPN+L+AK+ S+ NKPNG V+ D + T I LP
Sbjct: 162 SLARLIQKAILDATGLTCSIGVAPNKLIAKMASEFNKPNGISVVYEDDL--QTRIWPLPC 219
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
RK+ GIG + L+ FGI T ++ + L F ST + V G +
Sbjct: 220 RKVNGIGPKADEKLKR-FGIETVGQLAARERDWLIQNFGKSTGAWMHEVAWGRDNRPVVT 278
Query: 185 ARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
S+S E TF D+A L + E ++ D+Q++G G+T+ +KL+ F
Sbjct: 279 ESEPVSMSRETTFDRDLHAVRDRAELGAIFTHLCEKVAEDLQRKGYVGKTIGIKLRYDDF 338
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 282
++ TR T++++ + + I + + LK L LRL+G+RV
Sbjct: 339 KIATRDQTIERHTADGKTIRQVGGLCLKRVPLDRPLRLLGVRV 381
>gi|258408893|ref|ZP_05681175.1| DNA polymerase IV [Staphylococcus aureus A9763]
gi|257840340|gb|EEV64802.1| DNA polymerase IV [Staphylococcus aureus A9763]
Length = 337
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 40 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 98
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 99 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI--DYQNVHDIL 156
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 157 MTLDIGDFPGVGKASKKVMHD-NGIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 214
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 215 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 273
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 274 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 325
>gi|418932215|ref|ZP_13486045.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418991828|ref|ZP_13539487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|424767720|ref|ZP_18195035.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|377711767|gb|EHT35994.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377721523|gb|EHT45654.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|402348809|gb|EJU83783.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|408423947|emb|CCJ11358.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408425936|emb|CCJ13323.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408427924|emb|CCJ15287.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408429913|emb|CCJ27078.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408431899|emb|CCJ19214.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408433894|emb|CCJ21179.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408435886|emb|CCJ23146.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408437869|emb|CCJ25112.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
Length = 346
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 49 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 108 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI--DYQNVHDIL 165
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 166 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 223
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 224 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 282
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 283 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 329
>gi|254229504|ref|ZP_04922918.1| ImpB/MucB/SamB family [Vibrio sp. Ex25]
gi|262393489|ref|YP_003285343.1| DNA polymerase IV [Vibrio sp. Ex25]
gi|151937969|gb|EDN56813.1| ImpB/MucB/SamB family [Vibrio sp. Ex25]
gi|262337083|gb|ACY50878.1| DNA polymerase IV [Vibrio sp. Ex25]
Length = 356
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 151/301 (50%), Gaps = 32/301 (10%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+ RG S
Sbjct: 68 ALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYLDVTDSTACRG-SAT 126
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P D+ V I +LP+
Sbjct: 127 LIAESIRRDIWNELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPDK--VQEVIDTLPL 184
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 184
I G+GKV+ L G CE++ L F A + G+ +
Sbjct: 185 ENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW-QRSHGIDNREVVV 242
Query: 185 ARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGLRGRTL 231
R RKS+ ERTFS V EDK LY +L + E S D + K+G
Sbjct: 243 ERERKSVGVERTFSQNISSYDECWQVIEDK--LYPELEKRLERASPDKSIIKQG------ 294
Query: 232 TLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKV 290
+K+K A F++ T + Q + + +L+ +LK + +RL+GL V E++
Sbjct: 295 -IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIRLLGLNVMLKPENQA 350
Query: 291 R 291
R
Sbjct: 351 R 351
>gi|389797332|ref|ZP_10200375.1| DNA polymerase IV [Rhodanobacter sp. 116-2]
gi|388447706|gb|EIM03706.1| DNA polymerase IV [Rhodanobacter sp. 116-2]
Length = 366
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 147/300 (49%), Gaps = 9/300 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+LIFVP DF +Y S R++F ++ SLDEAYLD+T
Sbjct: 68 MPAIRAERLCPQLIFVPPDFVRYKAVSRQVREIFARHTELIEPLSLDEAYLDVTTTKSGL 127
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S AE +R ++ +E LT SAGVAPN+ LAK+ SD KP+G FV+ + V F+
Sbjct: 128 G-SATATAEAIREAIRKETRLTASAGVAPNKFLAKIASDFRKPDGLFVIRPQQ--VEAFL 184
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP+ ++ G+GKV E L GI T E+ + G+
Sbjct: 185 TPLPVGRLPGVGKVMEAKL-AALGIATVGELRAFAQAELEQRFGRWGRRLHELAQGIDEH 243
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE-GLRGRTLTLKLKTAS 239
R +S+E TF L + ++AE A Q+E G RT+ LKLKTA
Sbjct: 244 PVQPQRPTLQVSAEDTFEHDLRLDELEPHIRQLAEKAWAGHQREHGRVARTVVLKLKTAD 303
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLL-KAELPV--SLRLIGLRVTQF-NEDKVRAPSD 295
F TR++T S+ ++ A L + + P RL+G+ + F + D +A SD
Sbjct: 304 FHTLTRSLTPPTRPMSAAELADIACALRERVQRPADSRYRLVGVGLAGFVDRDGYQAQSD 363
>gi|293550615|ref|ZP_06673283.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|431444918|ref|ZP_19513647.1| DNA polymerase IV [Enterococcus faecium E1630]
gi|291603236|gb|EFF33420.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|430586080|gb|ELB24346.1| DNA polymerase IV [Enterococcus faecium E1630]
Length = 373
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQANIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 190 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 248 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 307 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|333912981|ref|YP_004486713.1| DNA polymerase IV [Delftia sp. Cs1-4]
gi|333743181|gb|AEF88358.1| DNA polymerase IV [Delftia sp. Cs1-4]
Length = 440
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 146/285 (51%), Gaps = 13/285 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ I +P DF + +S + + + P +DE Y+D T+V + G
Sbjct: 120 AARLCPQAILLPVDFAEVRRFSRMFKDIIVSIAPLMEDRGVDEVYIDFTDVPGGQREGGR 179
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+A ++ ++ + GLTCS GVAPN+LLAK+ S+ NKPNG V P+D AV I L
Sbjct: 180 VLARLIQKTITDATGLTCSIGVAPNKLLAKMASEFNKPNGISIVQPDDLQAV---IWPLA 236
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGS--- 179
RKI GIG + L+ + GI T E L K SL L F + ++ V G
Sbjct: 237 CRKINGIGPKADAKLQSL-GIQTIGE-LAKQSLPQLVQWFGRAYGNWLHGVSWGRDERPV 294
Query: 180 -TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
T++ + + ER D+A L ++ E L+ D+Q++G GRT+ +KL+
Sbjct: 295 VTHSEPVSMSRETTFERDLHAVRDRAELSAIFTDLCERLAQDLQRKGYMGRTVGIKLRYD 354
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 282
F+ TR TL+ ++ + + + A LK L LRL+G+RV
Sbjct: 355 DFKTATRDHTLELPMADAATLRRAAGQCLKRVPLAKRLRLLGVRV 399
>gi|148268367|ref|YP_001247310.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH9]
gi|150394429|ref|YP_001317104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH1]
gi|189044606|sp|A6U2Z9.1|DPO4_STAA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044607|sp|A5IU61.1|DPO4_STAA9 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|147741436|gb|ABQ49734.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946881|gb|ABR52817.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH1]
Length = 356
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|431751229|ref|ZP_19539921.1| DNA polymerase IV [Enterococcus faecium E2620]
gi|430615883|gb|ELB52821.1| DNA polymerase IV [Enterococcus faecium E2620]
Length = 373
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 154/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A KLCP+ IF P D KY+ S R+VF Y S+DEAYLD+TE C+
Sbjct: 77 AYKLCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + + L F + V G+ +
Sbjct: 190 TLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTLIRNFGKMGYSLYRKVR-GIHDS 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 248 PVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 307 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|431760524|ref|ZP_19549122.1| DNA polymerase IV [Enterococcus faecium E3346]
gi|430623868|gb|ELB60539.1| DNA polymerase IV [Enterococcus faecium E3346]
Length = 372
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 76 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 131
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 132 SAIKIARMIQANIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 188
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 189 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 246
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 247 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 305
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 306 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 355
>gi|386579169|ref|YP_006075574.1| DNA polymerase IV [Streptococcus suis JS14]
gi|319757361|gb|ADV69303.1| DNA polymerase IV [Streptococcus suis JS14]
Length = 355
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 160/298 (53%), Gaps = 35/298 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE + GIS
Sbjct: 75 AYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NKLGISSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++ +SL
Sbjct: 133 VKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL---ASL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
P+ K G+GK T L ++ G+ T +++L ++ D F G L G
Sbjct: 190 PVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDLYRKARG 241
Query: 179 STNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRGRT 230
+N+P R RKS ERT+ + LLYR +L + + ++A +++ G +GRT
Sbjct: 242 ISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRNGKKGRT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 286
+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ VT F
Sbjct: 297 IVLKVRYGDFSTLTKRHSLEVYTDKTETIEKEVRQLIEEIGKIEKGIRLLGVTVTNFQ 354
>gi|255021890|ref|ZP_05293900.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
gi|254968714|gb|EET26266.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
Length = 390
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 7/278 (2%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
AR LCP+ IFV Y S + Y SLDEA+LD+T + G +
Sbjct: 89 ARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTD-GTLAV 147
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+G FV+P +R + F++ LP+
Sbjct: 148 EIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERG--LAFLAPLPV 205
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
K+ G+G T L G+ T ++ + +F V + +
Sbjct: 206 GKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPS 264
Query: 186 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 244
R RKS+ +ERTFS D++++ L E+A ++A +Q L G T+ +K + F T
Sbjct: 265 RQRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLHLAGHTVHIKARFPDFTTVT 324
Query: 245 RAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGL 280
RA T + I S++ I LL +P S+RL+G+
Sbjct: 325 RAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGI 362
>gi|42521969|ref|NP_967349.1| DNA polymerase IV [Bdellovibrio bacteriovorus HD100]
gi|39574499|emb|CAE78003.1| DNA polymerase IV [Bdellovibrio bacteriovorus HD100]
Length = 356
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 152/304 (50%), Gaps = 15/304 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+L+ +P F Y S R++ ++ SLDEAYLD+T+ C +
Sbjct: 57 MPSSQAVRLCPQLVLIPPHFDLYKAESRKVREIMERFTNKIEPLSLDEAYLDVTD-CEQF 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G S IA+E+R ++ E LT SAGVAPN+ LAK+ SD KPNGQFV+ P D V TF
Sbjct: 116 GGSATLIAQEIRRLIFTELNLTASAGVAPNKFLAKIASDWKKPNGQFVVRPQD---VETF 172
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+ KI G+GKVT + D+ G+ TC ++ + L + + S A G+
Sbjct: 173 VKDLPVEKIFGVGKVTAQKMHDL-GLRTCGDIQKYTVLELSHWFGSRAAELYDFSRGIDH 231
Query: 180 TNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
RKS++ E T++ +D L + L + E M + R L +K
Sbjct: 232 REVITEWERKSLTVEETYN--KDLPTLQDCLKTLPSLYEDFVRRMDRGQYHDRIKGLVIK 289
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNEDKVRAPS 294
F+ + T ++ IS + +L KA V +RL+GL V + K + S
Sbjct: 290 LKFFDFKQ--TTHEEVISELPTLQDFERLLEKAWNRRGVPVRLVGLGVRLGTQKKFSSES 347
Query: 295 DPTQ 298
D +Q
Sbjct: 348 DSSQ 351
>gi|430853560|ref|ZP_19471288.1| DNA polymerase IV [Enterococcus faecium E1258]
gi|430540641|gb|ELA80843.1| DNA polymerase IV [Enterococcus faecium E1258]
Length = 372
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 76 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 131
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 132 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 188
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 189 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 246
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 247 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 305
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 306 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEVLGVEKGIRLLGITLTNLD 355
>gi|418898552|ref|ZP_13452620.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377758672|gb|EHT82555.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 346
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 152/287 (52%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 49 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 107
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 108 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDIL 165
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 166 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 223
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 224 SEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 282
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 283 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 329
>gi|257885067|ref|ZP_05664720.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|257820919|gb|EEV48053.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
Length = 373
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 190 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 248 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 307 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEVLGVEKGIRLLGITLTNLD 356
>gi|157871748|ref|XP_001684423.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
gi|68127492|emb|CAJ05431.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
Length = 751
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 56/332 (16%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA----------- 49
MPGFI +LCP+L+ VPTDF S + V +YDP+ +DE
Sbjct: 282 MPGFIGMRLCPQLVIVPTDFAACRVESAKFKGVVREYDPDAQLLGMDEVMMCLDDYLAHH 341
Query: 50 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 109
++D+T ++ + EE R + E GLT SAG+AP LAK+ S+ KPNGQF +
Sbjct: 342 HVDVTTHAGRFDVAE-RVIEECRRRIAEATGLTVSAGIAPTPTLAKMASNYKKPNGQFAV 400
Query: 110 P-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 168
R AV+ +++S+P+R++ GIGK E IL + GI T E+ ++ L + + T +
Sbjct: 401 RLFSREAVINYLASIPVRQVPGIGKSRESILAGL-GIRTLGEVYEQRHRLFYILTRKTYE 459
Query: 169 FFLSVGLGLGST-----NTPQARF---------------------RKSISSERTFSVTED 202
F L+ +G+G P + RKS+ ERTF +
Sbjct: 460 FLLASSIGIGGMYDSRETAPSSSAGATTGKTVAAMDGASNEDDWGRKSVGHERTFYKLMN 519
Query: 203 K----ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSED 258
+ A+ Y+ L E L +EGL + LKLK SF V+ + +L Y E
Sbjct: 520 RMALQAIAYKNLRRSQETLV----EEGLLCSQVVLKLKHHSFHVKQHSKSLNVYTDDHEV 575
Query: 259 ILKHASVLLKAELPV-----SLRLIGLRVTQF 285
+ + LL LPV RL+G+R+ +
Sbjct: 576 LRRALDELL---LPVMDDFAEFRLLGVRLEKL 604
>gi|417845577|ref|ZP_12491603.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
gi|341954646|gb|EGT81119.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
Length = 355
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 149/299 (49%), Gaps = 20/299 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP LI VP + Y S ++F +Y SLDEAYLD+T C++
Sbjct: 60 MPTAQAIKKCPNLILVPVNMALYKQVSAQIHQIFQRYTDIIEPLSLDEAYLDVTH-CQKC 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V F
Sbjct: 119 SGSATWIAQEIRQAIFNELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VEEF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I +L + KI G+GKVT L D+ G+ TC ++ ++ G+
Sbjct: 176 IKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDD 234
Query: 180 TNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTL 231
R RKS+ E+T ++ + AL LY++L E +S ++ R +
Sbjct: 235 REVQAHRERKSVGVEQTLIENIHTIEQASALLNNLYQELIRRLERVSRNIPLSAF--RKI 292
Query: 232 TLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 289
+KLK F+V T T L + S + +L + K +RLIGL V E+K
Sbjct: 293 GVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---KIRLIGLHVNLPEENK 348
>gi|300727423|ref|ZP_07060832.1| DNA polymerase IV [Prevotella bryantii B14]
gi|299775303|gb|EFI71902.1| DNA polymerase IV [Prevotella bryantii B14]
Length = 363
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 154/298 (51%), Gaps = 24/298 (8%)
Query: 5 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 64
+A++LCP LI + + Y S ++F Y S+DEA+LD+T V ++
Sbjct: 62 MAKRLCPNLIIAASHHSYYAKISHQIHEIFQDYTDKIEPISIDEAFLDVT-VNKKGSDLA 120
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 124
++IA+E++ ++E LT SAG++ N+ LAK+ SD KP+G FV+ D+ + FI+ LP
Sbjct: 121 VDIAKEIKQRIFETVHLTASAGISYNKFLAKIASDYRKPDGLFVIHPDK--ALDFIAQLP 178
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
I K G+G T + V N + + L +F S F+ + G+
Sbjct: 179 IEKFWGVGPKTALRMHHVGIFNGLQLRQCSVNHLKELFGKSGPVFY-NFARGIDERPVIS 237
Query: 185 ARFRKSISSERTFSVTEDKAL-------LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
RKS+ E+TF ED ++ LY + E+ E L +K+ RG+TLTLK+K
Sbjct: 238 EHVRKSVGCEQTF--LEDISIRSSVIIALYHIVLELVERL----KKDDFRGKTLTLKIKY 291
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK-----AELPVSLRLIGLRVTQFNEDKV 290
F +++++T QKY+ + IL A LL A P+ RL+GL V+ +E+ +
Sbjct: 292 GDFTQKSKSITQQKYLREKDTILPLAKQLLTQFRFDANHPI--RLMGLSVSNPHEEVI 347
>gi|49484136|ref|YP_041360.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426027|ref|ZP_05602449.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428700|ref|ZP_05605095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431310|ref|ZP_05607686.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257436932|ref|ZP_05612974.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904526|ref|ZP_06312411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|282906299|ref|ZP_06314151.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282909215|ref|ZP_06317031.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911520|ref|ZP_06319320.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914693|ref|ZP_06322478.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282919730|ref|ZP_06327462.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282925134|ref|ZP_06332794.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|283958656|ref|ZP_06376102.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|293507770|ref|ZP_06667612.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|293510787|ref|ZP_06669489.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|293539327|ref|ZP_06672006.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|295428477|ref|ZP_06821104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590052|ref|ZP_06948692.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|384867134|ref|YP_005747330.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|387603227|ref|YP_005734748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|404479241|ref|YP_006710671.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
gi|415684801|ref|ZP_11449864.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|417886924|ref|ZP_12531064.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|418565646|ref|ZP_13130043.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|418581874|ref|ZP_13145954.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418596890|ref|ZP_13160434.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|418600790|ref|ZP_13164241.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|418892785|ref|ZP_13446894.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418900449|ref|ZP_13454507.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909822|ref|ZP_13463813.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418917922|ref|ZP_13471878.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923666|ref|ZP_13477579.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982961|ref|ZP_13530666.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985616|ref|ZP_13533303.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|81650794|sp|Q6GFG2.1|DPO4_STAAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49242265|emb|CAG40972.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271170|gb|EEV03327.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274344|gb|EEV05856.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277959|gb|EEV08615.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283721|gb|EEV13846.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313092|gb|EFB43490.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|282316368|gb|EFB46745.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282321407|gb|EFB51733.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282324529|gb|EFB54841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326783|gb|EFB57080.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330496|gb|EFB60013.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595082|gb|EFC00049.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|283471165|emb|CAQ50376.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|283789696|gb|EFC28518.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919862|gb|EFD96931.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|291094833|gb|EFE25101.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|291466418|gb|EFF08942.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|295127459|gb|EFG57098.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577180|gb|EFH95894.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|312437639|gb|ADQ76710.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193424|gb|EFU23821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|341858556|gb|EGS99345.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|371972901|gb|EHO90269.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|374396472|gb|EHQ67709.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|374400687|gb|EHQ71795.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|377702813|gb|EHT27131.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377704176|gb|EHT28487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377706296|gb|EHT30595.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377711424|gb|EHT35657.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729387|gb|EHT53482.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377733260|gb|EHT57305.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377749229|gb|EHT73180.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377750768|gb|EHT74705.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|404440730|gb|AFR73923.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
Length = 356
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|256829594|ref|YP_003158322.1| DNA-directed DNA polymerase [Desulfomicrobium baculatum DSM 4028]
gi|256578770|gb|ACU89906.1| DNA-directed DNA polymerase [Desulfomicrobium baculatum DSM 4028]
Length = 412
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 143/299 (47%), Gaps = 8/299 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A+KLCP +F+P ++Y S + P AS+DEAY DI+ R
Sbjct: 66 MPIVQAKKLCPHAVFLPGRMSRYREISVKIMNIMRALCPLVEQASVDEAYADISGTRRIF 125
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTF 119
G IA L+ + LTCS G+APN+ LAK+ SD NKP G F+ P D V F
Sbjct: 126 GPPE-NIARRLKAEILAATNLTCSVGIAPNKFLAKIASDWNKPGGLTFIPPAD---VPAF 181
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LP+ +I G+GK + LR + G+ T +L F G+
Sbjct: 182 LRDLPLGRIPGVGKQFQEELRRI-GVTTIPHVLAHPRTYWNELMGKRGAFLHDRACGIDD 240
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
+ KS S+E T T D+ LL R L AE + +++ G +G T+TLK+K
Sbjct: 241 SPVVPGSDPKSCSAENTLDRDTLDRTLLERWLLIQAERIGRELRGLGKKGLTVTLKIKFQ 300
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDP 296
F TR+ TL + + +I + A +LL AE LP +RLIG V+ F + P P
Sbjct: 301 DFSSITRSRTLARPTDITTEIFEAARMLLTAEKLPRPVRLIGTGVSNFRFVQAELPLMP 359
>gi|15924885|ref|NP_372419.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|15927469|ref|NP_375002.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus N315]
gi|156980211|ref|YP_001442470.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu3]
gi|253316904|ref|ZP_04840117.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006682|ref|ZP_05145283.2| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793751|ref|ZP_05642730.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|258421003|ref|ZP_05683934.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|258430025|ref|ZP_05688395.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|258443457|ref|ZP_05691799.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|258445315|ref|ZP_05693506.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|258447879|ref|ZP_05696013.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|258453312|ref|ZP_05701297.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|269203548|ref|YP_003282817.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282894562|ref|ZP_06302790.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|282928068|ref|ZP_06335675.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|295407275|ref|ZP_06817074.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|296276904|ref|ZP_06859411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MR1]
gi|297246199|ref|ZP_06930050.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|384865100|ref|YP_005750459.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831484|ref|YP_006238138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387151036|ref|YP_005742600.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|415693410|ref|ZP_11455212.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652327|ref|ZP_12302075.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|417799257|ref|ZP_12446403.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|417802359|ref|ZP_12449421.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|417892730|ref|ZP_12536773.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|418313350|ref|ZP_12924841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|418425084|ref|ZP_12998184.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|418428036|ref|ZP_13001029.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|418430906|ref|ZP_13003812.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|418434765|ref|ZP_13006620.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|418437519|ref|ZP_13009303.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440428|ref|ZP_13012121.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443426|ref|ZP_13015021.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|418446497|ref|ZP_13017961.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449518|ref|ZP_13020893.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452343|ref|ZP_13023672.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455316|ref|ZP_13026569.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458192|ref|ZP_13029385.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418600140|ref|ZP_13163609.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|418640175|ref|ZP_13202408.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653301|ref|ZP_13215240.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|418656863|ref|ZP_13218650.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|418878853|ref|ZP_13433085.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881582|ref|ZP_13435797.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884557|ref|ZP_13438743.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887258|ref|ZP_13441399.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418894685|ref|ZP_13448783.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418915025|ref|ZP_13468993.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920153|ref|ZP_13474087.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|419784424|ref|ZP_14310191.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|443635272|ref|ZP_21119403.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
gi|54036997|sp|P63992.1|DPO4_STAAN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040958|sp|P63991.1|DPO4_STAAM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044605|sp|A7X420.1|DPO4_STAA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13701688|dbj|BAB42981.1| SA1711 [Staphylococcus aureus subsp. aureus N315]
gi|14247667|dbj|BAB58057.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|156722346|dbj|BAF78763.1| hypothetical protein SAHV_1880 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787723|gb|EEV26063.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|257842951|gb|EEV67369.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|257849619|gb|EEV73587.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|257851342|gb|EEV75282.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|257855833|gb|EEV78757.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|257858811|gb|EEV81680.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|257864520|gb|EEV87263.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|262075838|gb|ACY11811.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282590132|gb|EFB95213.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|282763049|gb|EFC03181.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|285817575|gb|ADC38062.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|294967850|gb|EFG43880.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|297176906|gb|EFH36163.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|312830267|emb|CBX35109.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129296|gb|EFT85290.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724814|gb|EGG61318.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|334274366|gb|EGL92687.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|334274843|gb|EGL93150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|341857210|gb|EGS98032.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|365236159|gb|EHM77060.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|374395052|gb|EHQ66326.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|375015118|gb|EHS08783.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018963|gb|EHS12529.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|375032138|gb|EHS25391.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|377693131|gb|EHT17506.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696038|gb|EHT20395.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377712330|gb|EHT36548.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377722126|gb|EHT46253.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377730091|gb|EHT54165.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377755053|gb|EHT78957.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766065|gb|EHT89903.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|383364037|gb|EID41359.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|385196876|emb|CCG16513.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716866|gb|EIK04904.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|387717367|gb|EIK05382.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|387717639|gb|EIK05639.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|387724007|gb|EIK11693.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|387726071|gb|EIK13655.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|387729222|gb|EIK16678.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733714|gb|EIK20887.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|387735534|gb|EIK22654.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|387735637|gb|EIK22748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|387743458|gb|EIK30250.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743497|gb|EIK30288.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387745166|gb|EIK31927.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|443409751|gb|ELS68242.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
Length = 356
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|118497578|ref|YP_898628.1| DNA polymerase IV [Francisella novicida U112]
gi|195536274|ref|ZP_03079281.1| ImpB/MucB/SamB family protein [Francisella novicida FTE]
gi|226738234|sp|A0Q6K9.1|DPO4_FRATN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|118423484|gb|ABK89874.1| DNA-damage inducible protein P [Francisella novicida U112]
gi|194372751|gb|EDX27462.1| ImpB/MucB/SamB family protein [Francisella tularensis subsp.
novicida FTE]
Length = 349
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 131/229 (57%), Gaps = 13/229 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + TC + LQ+ SL L F + + S G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNLY-SYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 224
+ R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|69246405|ref|ZP_00603927.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|406580418|ref|ZP_11055611.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|406582747|ref|ZP_11057845.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|406584910|ref|ZP_11059906.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410936970|ref|ZP_11368832.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430824014|ref|ZP_19442581.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430844890|ref|ZP_19462787.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430846835|ref|ZP_19464689.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430851098|ref|ZP_19468853.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430856102|ref|ZP_19473806.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|431237138|ref|ZP_19503281.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|431264073|ref|ZP_19505961.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|431382817|ref|ZP_19511410.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|431522829|ref|ZP_19516778.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|431536394|ref|ZP_19517354.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|431701816|ref|ZP_19524925.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|431744892|ref|ZP_19533757.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|431779259|ref|ZP_19567455.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|447913406|ref|YP_007394818.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
gi|68195277|gb|EAN09729.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|404453795|gb|EKA00827.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|404457737|gb|EKA04267.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|404463129|gb|EKA08825.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410734563|gb|EKQ76482.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430441398|gb|ELA51495.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430496321|gb|ELA72426.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430534502|gb|ELA74946.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430538389|gb|ELA78681.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430545391|gb|ELA85365.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|430572702|gb|ELB11552.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|430576509|gb|ELB15160.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|430581188|gb|ELB19635.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|430585011|gb|ELB23320.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|430594881|gb|ELB32833.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|430597101|gb|ELB34905.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|430604817|gb|ELB42247.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|430642524|gb|ELB78301.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|445189115|gb|AGE30757.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
Length = 372
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 76 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 131
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 132 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 188
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 189 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 246
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 247 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 305
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 306 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 355
>gi|385792952|ref|YP_005825928.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678277|gb|AEE87406.1| DNA polymerase IV [Francisella cf. novicida Fx1]
Length = 350
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 131/229 (57%), Gaps = 13/229 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + TC + LQ+ SL L F + + S G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNLY-SYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 224
+ R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|347549369|ref|YP_004855697.1| putative DNA-damage-inducible protein dinP [Listeria ivanovii
subsp. ivanovii PAM 55]
gi|346982440|emb|CBW86436.1| Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol
IV)) [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 356
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 152/290 (52%), Gaps = 11/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + + Y S R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTKQAVKLCPNGIFIHGNMSHYVEVSGQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S IA +++ ++Y E GLT SAGV+ N+ +AK+ SD +KP G V+ D F
Sbjct: 118 GMKSATLIARDIQQTIYRELGLTASAGVSFNKFIAKIASDFHKPAGITVVSPDEAE--AF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +P+ K G+GKVT L + GI T + L+K S + + L + S
Sbjct: 176 LEKIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKQGYHLYRHVRGRS 233
Query: 180 TNTPQA-RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
N R RKS+ E TF D+ +L + L A+ + + K G+T+ LKL+
Sbjct: 234 NNVVNPHRDRKSVGKETTFEFNILDERILEQNLMIFAKKVEERLTKLQKHGKTIVLKLRY 293
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQF 285
+ F T+ +TL +YI ++ I + A++LL+ S+RLIGL VT
Sbjct: 294 SDFTTVTKRLTLNEYIHDAKQIYQAAALLLRETYTGKESIRLIGLTVTNL 343
>gi|257879319|ref|ZP_05658972.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257881865|ref|ZP_05661518.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257890145|ref|ZP_05669798.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257893473|ref|ZP_05673126.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260558761|ref|ZP_05830950.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|261207356|ref|ZP_05922043.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289566863|ref|ZP_06447272.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|293559579|ref|ZP_06676113.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|293567574|ref|ZP_06678918.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|294615737|ref|ZP_06695587.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|294617662|ref|ZP_06697289.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|314937919|ref|ZP_07845235.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|314941410|ref|ZP_07848303.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|314948535|ref|ZP_07851915.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|314951290|ref|ZP_07854344.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|314992879|ref|ZP_07858280.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|314998083|ref|ZP_07862971.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|383328038|ref|YP_005353922.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|389867928|ref|YP_006375351.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|415894551|ref|ZP_11550362.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|416141894|ref|ZP_11599495.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|424790843|ref|ZP_18217351.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|424812972|ref|ZP_18238210.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|424827112|ref|ZP_18251927.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|424862493|ref|ZP_18286434.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|424901209|ref|ZP_18324746.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|424951499|ref|ZP_18366589.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|424952391|ref|ZP_18367416.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|424956586|ref|ZP_18371357.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|424961921|ref|ZP_18376320.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|424964118|ref|ZP_18378259.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|424968420|ref|ZP_18382044.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|424969912|ref|ZP_18383457.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|424973275|ref|ZP_18386563.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|424978170|ref|ZP_18391116.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|424982026|ref|ZP_18394709.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|424984626|ref|ZP_18397153.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|424986313|ref|ZP_18398740.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|424990169|ref|ZP_18402393.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|424994773|ref|ZP_18406698.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|424999062|ref|ZP_18410709.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|425005449|ref|ZP_18416691.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|425007823|ref|ZP_18418938.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|425009707|ref|ZP_18420701.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|425014480|ref|ZP_18425154.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|425019387|ref|ZP_18429755.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|425019621|ref|ZP_18429969.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|425023820|ref|ZP_18433915.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|425031184|ref|ZP_18436327.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|425036572|ref|ZP_18441314.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|425039062|ref|ZP_18443629.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|425043158|ref|ZP_18447421.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|425045520|ref|ZP_18449619.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|425048658|ref|ZP_18452549.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|425051519|ref|ZP_18455183.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|425061120|ref|ZP_18464385.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|427395461|ref|ZP_18888383.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430831485|ref|ZP_19449536.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430862315|ref|ZP_19479632.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430867327|ref|ZP_19482321.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430963227|ref|ZP_19487519.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|431011146|ref|ZP_19489890.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|431290485|ref|ZP_19506620.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|431747928|ref|ZP_19536692.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|431754045|ref|ZP_19542710.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|431768728|ref|ZP_19557161.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|431770023|ref|ZP_19558426.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|431774449|ref|ZP_19562757.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|431776996|ref|ZP_19565253.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|431781303|ref|ZP_19569451.1| DNA polymerase IV [Enterococcus faecium E6012]
gi|431784934|ref|ZP_19572969.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|257813547|gb|EEV42305.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257817523|gb|EEV44851.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257826505|gb|EEV53131.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257829852|gb|EEV56459.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260075220|gb|EEW63533.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|260078416|gb|EEW66120.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289161351|gb|EFD09242.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|291589675|gb|EFF21479.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|291591388|gb|EFF23047.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|291596069|gb|EFF27335.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|291606455|gb|EFF35855.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|313587925|gb|EFR66770.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|313592683|gb|EFR71528.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|313596507|gb|EFR75352.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|313599833|gb|EFR78676.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|313642777|gb|EFS07357.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|313645032|gb|EFS09612.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|364089914|gb|EHM32556.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|364092131|gb|EHM34531.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|378937732|gb|AFC62804.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|388533177|gb|AFK58369.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|402916579|gb|EJX37434.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|402920398|gb|EJX40916.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|402923556|gb|EJX43839.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|402925523|gb|EJX45657.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|402929819|gb|EJX49540.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|402931190|gb|EJX50781.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|402941404|gb|EJX60134.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|402942144|gb|EJX60773.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|402945696|gb|EJX64030.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|402947532|gb|EJX65740.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|402952036|gb|EJX69896.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|402958911|gb|EJX76192.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|402961782|gb|EJX78777.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|402962996|gb|EJX79896.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|402963083|gb|EJX79977.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|402968385|gb|EJX84868.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|402976878|gb|EJX92731.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|402979166|gb|EJX94849.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|402980164|gb|EJX95791.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|402980893|gb|EJX96463.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|402985999|gb|EJY01151.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|402994248|gb|EJY08791.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|402998300|gb|EJY12563.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|402998547|gb|EJY12796.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|403001961|gb|EJY15974.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|403008428|gb|EJY21932.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|403011172|gb|EJY24501.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|403014113|gb|EJY27131.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|403016353|gb|EJY29177.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|403017456|gb|EJY30199.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|403020988|gb|EJY33472.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|403026817|gb|EJY38752.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|403029973|gb|EJY41693.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|403037479|gb|EJY48751.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|403042057|gb|EJY53033.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|425723961|gb|EKU86847.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430481368|gb|ELA58524.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430548893|gb|ELA88740.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430550338|gb|ELA90134.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430555652|gb|ELA95189.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|430560168|gb|ELA99474.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|430582585|gb|ELB21007.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|430614804|gb|ELB51775.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|430619968|gb|ELB56771.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|430628596|gb|ELB65030.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|430634198|gb|ELB70333.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|430635776|gb|ELB71855.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|430639937|gb|ELB75791.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|430648490|gb|ELB83896.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|430649664|gb|ELB85032.1| DNA polymerase IV [Enterococcus faecium E6012]
Length = 373
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 190 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 248 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 307 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|333381439|ref|ZP_08473121.1| hypothetical protein HMPREF9455_01287 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830409|gb|EGK03037.1| hypothetical protein HMPREF9455_01287 [Dysgonomonas gadei ATCC
BAA-286]
Length = 348
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 158/298 (53%), Gaps = 19/298 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A + CP+LIFVP F Y S ++F +Y SLDEA+LD+TE +
Sbjct: 48 MASKTALRKCPQLIFVPARFDVYKSVSRQIMEIFHEYTDLVEPLSLDEAFLDVTE--NNK 105
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
I S +IA+E++ + E LT SAGV+ N+ LAK+ SD NKP+G FV+ P +
Sbjct: 106 NIPSATQIAQEIKQKILEATRLTASAGVSFNKFLAKIASDQNKPDGLFVVKPKN---AEQ 162
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGL 177
F+ +L I + G+GKVT + + GI ++ Q+ + L AVF + +F + +
Sbjct: 163 FVETLAIEQFFGVGKVTAKRMHQL-GIKNGWDLKQRSENELIAVFGKAGHIYFQN-ARAI 220
Query: 178 GSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
R RKS+SSE TF E+ AL+ L E+A D++++ + RT+TL
Sbjct: 221 DDRPVESQRIRKSMSSETTFEHDIDNLEELALI---LDEVARDAFHDIERKKFKARTVTL 277
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKV 290
K+K A F+ TR+ T ++ E K LL+ +L +RLIGL + NED++
Sbjct: 278 KIKYADFKTITRSKTFPASVADYESFYKAGFELLQNIDLSPKVRLIGLGLKN-NEDEM 334
>gi|386729583|ref|YP_006195966.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
gi|418311480|ref|ZP_12923003.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|418980100|ref|ZP_13527887.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|365234136|gb|EHM75076.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|379992131|gb|EIA13589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|384230876|gb|AFH70123.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
Length = 356
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSTRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|430837087|ref|ZP_19455063.1| DNA polymerase IV [Enterococcus faecium E0680]
gi|430487868|gb|ELA64576.1| DNA polymerase IV [Enterococcus faecium E0680]
Length = 373
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 190 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 248 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 307 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|430821683|ref|ZP_19440274.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430829563|ref|ZP_19447655.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430869936|ref|ZP_19483091.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|431766003|ref|ZP_19554501.1| DNA polymerase IV [Enterococcus faecium E4215]
gi|430438165|gb|ELA48638.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430480316|gb|ELA57492.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430559313|gb|ELA98672.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|430627336|gb|ELB63845.1| DNA polymerase IV [Enterococcus faecium E4215]
Length = 372
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 76 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 131
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 132 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 188
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 189 ALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 246
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 247 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 305
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 306 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 355
>gi|359687051|ref|ZP_09257052.1| DNA polymerase IV [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751085|ref|ZP_13307371.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
gi|418757063|ref|ZP_13313251.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384116734|gb|EIE02991.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404273688|gb|EJZ41008.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
Length = 367
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 157/294 (53%), Gaps = 17/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP IFV F Y S R++F +Y SLDEA+LD+T+ ++
Sbjct: 58 MPCSQAARLCPSGIFVTPRFEAYKKVSSKIRQIFLEYTDLVEMLSLDEAFLDVTQ--NKK 115
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
I ++A+E+R ++EE LT SAGV+ N+ LAK+ +D NKPNG ++ ++ V F
Sbjct: 116 NIPYATQVAKEIREKIFEETQLTASAGVSINKFLAKIATDQNKPNGMTIVRPEQ--VEKF 173
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I SL + GIGKVT + GI +++ +K + + +F +V GL
Sbjct: 174 IESLDVSVFPGIGKVTLKKMH-ALGIKKGKDLKEKSLEMLDQNFGKSGRWFYAVCRGLDD 232
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TF+ E+ + ++R+L++IAE L + ++ G+T+TLK+K +
Sbjct: 233 RPVEPFRERKSLGAESTFAKDLENSSEIFRELSDIAEELERRLLQKPFPGKTITLKVKFS 292
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL--------KAELPVSLRLIGLRVTQ 284
F +TR++T ++ + S LL KA P+ RL+GL ++
Sbjct: 293 DFTQKTRSITEDYSYLDKNELYRIGSKLLEEFILGSGKAIFPI--RLLGLSLSH 344
>gi|406832336|ref|ZP_11091930.1| DNA polymerase IV 2 [Schlesneria paludicola DSM 18645]
Length = 348
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 149/281 (53%), Gaps = 9/281 (3%)
Query: 10 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 69
CPELIFV F Y S ++++ +Y P + DEAYLD+TE + + + A
Sbjct: 57 CPELIFVAPRFDVYRSISHDIKQIYYEYTPKVEPVAFDEAYLDVTESLQGETTAWM-TAR 115
Query: 70 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKI 128
E+R ++E GLT SAGV+ N+ LAK+ S KPN QF +LP D A F++ L + +
Sbjct: 116 EIRARIFELTGLTASAGVSFNKFLAKLASGYKKPNSQFAILPGDAEA---FLAGLSVSRF 172
Query: 129 GGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 188
GIG VT + D+ GI+T ++ + L +++ + G S + AR R
Sbjct: 173 HGIGPVTAKKMSDL-GIHTGADLKAQSVELLRQHFGRIGEWYYGIARGEDSRSVEHARIR 231
Query: 189 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 247
KS SSE TF E A + ++ +AE + + GRT+T+K + A F+ TR+
Sbjct: 232 KSFSSETTFRQDLEQLADIEAQVLALAEDVWQWCDGTQMFGRTVTVKFRFADFQRITRSR 291
Query: 248 TLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ ++Y+ E + + L+++ P+ ++RL+G+ ++ F
Sbjct: 292 SEREYVDRPELLREICVGLVRSVFPLRQAIRLVGVGISNFR 332
>gi|304439728|ref|ZP_07399627.1| NAD(+) kinase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371803|gb|EFM25410.1| NAD(+) kinase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 346
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 147/282 (52%), Gaps = 11/282 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP F+AR LCP++I VP +Y S + Y S+DEAYLDI
Sbjct: 54 MPIFMARSLCPQVIIVPGRMYRYKEKSIEVFSILKTYAKVIEQVSIDEAYLDIAGTE--- 110
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G E+A ++++ V E+ GLT S G++ N+ LAK+ SD NKP+G + D V +
Sbjct: 111 --DGRELAMKIKSEVKEKTGLTISVGLSYNKFLAKIASDWNKPDGFMEIDED--MVPEIL 166
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
L I K+ GIGKV+E LR++ GIN ++++ + F+ + + + G+
Sbjct: 167 YDLDISKVHGIGKVSEDRLREL-GINNVKDLMSLSREYMTLEFNKMGHELYDRIR-GIDR 224
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ ERTF+ T D+ +LY + ++ LS D+++ T+T+K+KT
Sbjct: 225 REVKGDRKRKSMGVERTFTPTGDEKILYEYIDRFSKELSEDLKRIDKSAMTITIKIKTDK 284
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 280
F++ T + T + I EDI A L K E LRL+G+
Sbjct: 285 FKIHTISKTFLESIEKYEDIKNIAEELYDKLENRERLRLLGI 326
>gi|430833777|ref|ZP_19451788.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430839165|ref|ZP_19457107.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430859625|ref|ZP_19477234.1| DNA polymerase IV [Enterococcus faecium E1552]
gi|430486182|gb|ELA63050.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430491162|gb|ELA67644.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430543162|gb|ELA83237.1| DNA polymerase IV [Enterococcus faecium E1552]
Length = 372
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 76 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 131
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 132 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 188
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 189 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 246
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 247 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 305
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 306 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 355
>gi|431745421|ref|ZP_19534267.1| DNA polymerase IV [Enterococcus faecium E2134]
gi|430610468|gb|ELB47613.1| DNA polymerase IV [Enterococcus faecium E2134]
Length = 373
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 190 ALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 248 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 307 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|418568277|ref|ZP_13132626.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
gi|371980042|gb|EHO97258.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
Length = 356
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVV--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|350532188|ref|ZP_08911129.1| DNA polymerase IV [Vibrio rotiferianus DAT722]
Length = 342
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 148/310 (47%), Gaps = 40/310 (12%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+ R
Sbjct: 49 MPTARALQLCPNLLVVPGRMHVYKQVSQQIRAIFERYTPLIEPLSLDEAYLDVTDSKMCR 108
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE +R +Y E GLT SAG+AP + LAKV SD+NKPNGQFV+P ++ V +
Sbjct: 109 G-SATLIAESIRNDIYSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEK--VQEVV 165
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
LP+ KI G+GKV+ L G CE++ L F A + G+
Sbjct: 166 DKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW-KRSHGIDD 223
Query: 180 TNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGL 226
R RKS+ ERTFS V EDK L+ +L E S D + K+G
Sbjct: 224 REVVVERERKSVGVERTFSENIATYDECWKVIEDK--LFPELERRLEKASPDKSIIKQG- 280
Query: 227 RGRTLTLKLKTASFEVRT-----RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 281
+KLK A F++ T + L+ + DILK + +RL+GL
Sbjct: 281 ------IKLKFADFQLTTIEHIHPQLELEDFKVLLRDILKRQN-------GREIRLLGLS 327
Query: 282 VTQFNEDKVR 291
V E + R
Sbjct: 328 VMLKPEQQAR 337
>gi|187778600|ref|ZP_02995073.1| hypothetical protein CLOSPO_02195 [Clostridium sporogenes ATCC
15579]
gi|187772225|gb|EDU36027.1| ImpB/MucB/SamB family protein [Clostridium sporogenes ATCC 15579]
Length = 349
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 156/300 (52%), Gaps = 23/300 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP F+A+K CP I+VP +Y S+ K+ K P S+DEAYLDI+ + +E+
Sbjct: 57 MPVFMAKKKCPFGIYVPGRHNRYREVSNNIFKILYKVTPIIEPVSIDEAYLDISHI-KEK 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I++A+ ++ V +E GLT S G++ N+ LAK+ SD NKP+G ++ D + +
Sbjct: 116 ---PIKVAKYIKNRVKDEIGLTLSVGISYNKFLAKLASDWNKPDGIKIINKD--MIPRIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL----- 175
LPI KI GIGK + L ++ G+ T +M + C ++F G+
Sbjct: 171 MPLPINKIHGIGKKSVEKLHNI-GVFTVADMHKLSKDFC-------IEYFGKFGVEIYDR 222
Query: 176 --GLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G+ +R RKSI E T +K + + L + + +S ++ K G+T+T
Sbjct: 223 IRGIDYREVKVSRERKSIGKEITLKKDIINKEEMKKYLLDFSNKISTNLYKRNSAGKTVT 282
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 291
+K+KT++F+ TR+ T+ Y ++I A +L +RLIGL V+ E+K++
Sbjct: 283 VKIKTSNFKTHTRSKTVNDYTRDKDEIYSIACDILDNINFKEPIRLIGLTVSNLGENKIK 342
>gi|392966693|ref|ZP_10332112.1| DNA-directed DNA polymerase [Fibrisoma limi BUZ 3]
gi|387845757|emb|CCH54158.1| DNA-directed DNA polymerase [Fibrisoma limi BUZ 3]
Length = 374
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 13/306 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A + CP LIFV F Y S R +F Y SLDEAYLD+TE
Sbjct: 75 MSSLMAIRKCPHLIFVKPRFEVYKTVSAQIRTIFADYTDLIEPLSLDEAYLDVTERA-SA 133
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
++ +IA+E++ + +E LT SAGV+ N+ LAK+ SD KP+G FV+ P+ +A F
Sbjct: 134 DLTATQIAQEIKERIRQETQLTASAGVSYNKFLAKLASDYRKPDGLFVIKPHQGLA---F 190
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + + G+G+VT + + GI T ++ Q+ + S+ +
Sbjct: 191 VEQLNVGQFHGVGRVTAEKMNQL-GIFTGLDLRQQTEAFLTRHFGKVGHHYYSIARAIDD 249
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ SE TFS +TE+ LL L + + + A ++ G+ GRT+TLK+K
Sbjct: 250 RPVTANRVRKSVGSENTFSHDLTEESELL-TGLEPLTDDVWAYCERTGVYGRTVTLKVKY 308
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSD 295
A F+ TR+ TL ++S + + + LL LP+ +RL+G+ ++ N D V S
Sbjct: 309 ADFQQITRSRTLPTTVASRNILQQITADLLTGLLPLPKPVRLLGVSIS--NLDTVTTTSA 366
Query: 296 PTQKTL 301
Q L
Sbjct: 367 NGQLAL 372
>gi|418563747|ref|ZP_13128181.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
gi|371970362|gb|EHO87784.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
Length = 356
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ + +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDMNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>gi|358052928|ref|ZP_09146734.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
gi|357257587|gb|EHJ07838.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
Length = 356
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 157/310 (50%), Gaps = 17/310 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP +V F +Y S +F Y SLDEAYLDIT++ R
Sbjct: 59 MPMSQAHKLCPNGYYVTHRFGEYRKISQQIMAIFRSYTDKVEPMSLDEAYLDITDLVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V I
Sbjct: 118 DLPASQIAQYIRRDILEQTALTASAGVSYNKFLAKLASGMNKPNGMTVI--DYNNVHDII 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
SL I G+GK ++ ++ D I T +++ QK L +F + + G+
Sbjct: 176 MSLDIGDFPGVGKASKKVMHDN-DIYTGQDLYQKSEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKSI +ERTF+ V +D+ +L RK+ E++ + + + +T+T+K+KT
Sbjct: 234 SEVKSSRIRKSIGTERTFATDVNDDEQIL-RKVWELSGKTAERLNELQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVRAPSD 295
FE ++ +L+ +++ DI A L + + +RLIG+ V PS
Sbjct: 293 YQFETYSKQTSLRDSVNTENDIYNIAYALYNELKDPDIPIRLIGVTVGNLE------PSS 346
Query: 296 PTQKTLTNFM 305
T+ +F+
Sbjct: 347 YKNMTIYDFI 356
>gi|398356293|ref|YP_006529620.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|399995501|ref|YP_006575739.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|365182348|emb|CCE99198.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|390131540|gb|AFL54920.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 363
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 147/291 (50%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+L+FV F Y S R +F +Y P SLDEAYLD+TE +
Sbjct: 65 MPSVTAKRKCPDLVFVRPRFDVYKAVSLQIRAIFAEYTPMIEPLSLDEAYLDVTENLKGM 124
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 125 EIA-TEIAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 180
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ LPI+K G+G T + + GI T ++ +K + +F + G+ +
Sbjct: 181 VEQLPIKKFHGVGPATAEKMHRL-GIETGADLKEKSFEFLVEHFGKSGPYFYGIARGIDN 239
Query: 180 TNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ +E TFS ED L + E + + + +T+TLK+K
Sbjct: 240 REIKPNRVRKSVGAEDTFS--EDIHAFEPAREGLQPLMEKVWGYCEANEIGAKTVTLKVK 297
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
A F TR+ T+ + + ++ + +LL P +RL+G+ ++
Sbjct: 298 YADFTQITRSKTVAAPLQTISNLEEVVGLLLAPIFPPRKGIRLLGVSLSSL 348
>gi|385831557|ref|YP_005869370.1| DNA polymerase IV [Lactococcus lactis subsp. lactis CV56]
gi|418037230|ref|ZP_12675613.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|326407565|gb|ADZ64636.1| DNA polymerase IV [Lactococcus lactis subsp. lactis CV56]
gi|354694717|gb|EHE94360.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris
CNCM I-1631]
Length = 363
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 158/296 (53%), Gaps = 24/296 (8%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F Y + AAS+DEAYLD+TE + S I
Sbjct: 74 AYDLCPQAIFISGNYEKYTKVSKQVREIFKCYTDDIEAASIDEAYLDVTE-NKIGAQSAI 132
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P + + F++ LP
Sbjct: 133 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPEE---ALEFLAKLP 189
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNT 182
+ K G+GK T L + N + LQK L F + + G+ ++
Sbjct: 190 VEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLAERFGVYGWELYQKAN-GIHNSKV 246
Query: 183 PQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ ERT+ LLY +L++I+ +S ++ L+G + LKL+
Sbjct: 247 KNYRERKSVGKERTYG-----KLLYLPDDIKAELSKISGKVSDSLKSHQLKGSIVILKLR 301
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIGLRVTQFNEDK 289
+ F T+ +L + + S E+I + A + L+ + + +RL+G+ VT+F K
Sbjct: 302 YSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYDESLGVRLLGVTVTEFGAQK 357
>gi|293572065|ref|ZP_06683076.1| DNA polymerase IV [Enterococcus faecium E980]
gi|291607850|gb|EFF37161.1| DNA polymerase IV [Enterococcus faecium E980]
Length = 372
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 154/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD+TE C+
Sbjct: 76 AYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLDVTENKINCK---- 131
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 132 SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 188
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 189 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 246
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 247 PVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 305
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 306 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 355
>gi|257888438|ref|ZP_05668091.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257899185|ref|ZP_05678838.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|431049963|ref|ZP_19493323.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|431065032|ref|ZP_19493855.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|431594896|ref|ZP_19522002.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|431738337|ref|ZP_19527282.1| DNA polymerase IV [Enterococcus faecium E1972]
gi|257824492|gb|EEV51424.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257837097|gb|EEV62171.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|430560372|gb|ELA99669.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|430568652|gb|ELB07691.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|430590822|gb|ELB28868.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|430597775|gb|ELB35558.1| DNA polymerase IV [Enterococcus faecium E1972]
Length = 373
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 29/295 (9%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAVFSHSTADFFLSVGL 175
+LPI K G+GK T + ++ GI T C EM+ L F + V
Sbjct: 190 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRNFGKMGYSLYRKVR- 242
Query: 176 GLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
G+ + R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ L
Sbjct: 243 GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQKHGKTVVL 301
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
K++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 302 KVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|419839102|ref|ZP_14362520.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
gi|386909813|gb|EIJ74477.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
Length = 355
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 150/299 (50%), Gaps = 20/299 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP LI VP + Y S ++F +Y SLDEAYLD+T C++
Sbjct: 60 MPTAQAIKKCPNLILVPVNMALYKQVSAQIHQIFQRYTDIIEPLSLDEAYLDVTH-CQKC 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V F
Sbjct: 119 SGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VSEF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I +L + KI G+GKVT L D+ G+ TC ++ ++ G+
Sbjct: 176 IKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDD 234
Query: 180 TNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTL 231
R RKS+ E+T ++ + AL LY +L E +S ++ R +
Sbjct: 235 REVQAHRERKSVGVEQTLVENIHTIEQASALLNNLYDELIRRLERVSRNIPLSSF--RKI 292
Query: 232 TLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 289
+KLK F+V T T L + S + +L + K ++RLIGL V E+K
Sbjct: 293 GVKLKFEDFQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---AIRLIGLHVNLPEENK 348
>gi|328957028|ref|YP_004374414.1| DNA polymerase IV [Carnobacterium sp. 17-4]
gi|328673352|gb|AEB29398.1| DNA polymerase IV [Carnobacterium sp. 17-4]
Length = 377
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 148/287 (51%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP F+ + Y S R +F +Y SLDEAYLD+T V + S
Sbjct: 80 AYELCPHGNFISGHYDLYREISAEVRSIFERYTDTIEPLSLDEAYLDVT-VNKHNLTSAT 138
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IA+ ++ +++E LT SAGV+ N+ +AK+ SD +KP G V+P D + F+ LPI
Sbjct: 139 YIAKLIQRDIWQEVQLTSSAGVSYNKFIAKLASDYHKPAGITVIPPDE--ALDFLRKLPI 196
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 184
K G+GK T + D+ I T E++ QK + L F + V G+ ++
Sbjct: 197 EKFYGVGKKTVEKMHDL-SIYTGEDLFQKNEMELIQRFGRMGYSLYRKV-RGIDNSPVRV 254
Query: 185 ARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
+R RKS+ E T+ TE + L +L IA + +QK G+T+ LK++ ++FE
Sbjct: 255 SRERKSVGRELTYGKNLTTEQEVL--SELRFIANKVQLSLQKNQKHGKTVVLKVRYSNFE 312
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 286
T+ +TL Y+ + E+I HA L L +RL+G+ VT +
Sbjct: 313 TATKRLTLPNYVKNGEEIFFHAQNLWDEIGVLDRGIRLLGITVTNLD 359
>gi|303248472|ref|ZP_07334730.1| DNA-directed DNA polymerase [Desulfovibrio fructosovorans JJ]
gi|302490092|gb|EFL50012.1| DNA-directed DNA polymerase [Desulfovibrio fructosovorans JJ]
Length = 388
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 145/290 (50%), Gaps = 6/290 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP +F+P + +Y S L P AS+DEAY+DIT
Sbjct: 55 MPVAEAKRRCPHGVFLPGNRRRYAEVSRLVMATLQAVSPLVEPASIDEAYVDITGTETLF 114
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G + L++ + E GL CS G+AP + +AK+ SD +KP+G ++ D++++ F+
Sbjct: 115 GPPET-LGRRLKSMIREATGLNCSVGIAPVKFIAKIASDYDKPDGLTIVAPDQVSL--FL 171
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP+ KI G+GK + L GI E+ Q + G GS
Sbjct: 172 ADLPVGKIPGVGKRAQAAL-SRLGIRVVGEIPQYPPEFWQRHLGKWGLDLYARACGQGSD 230
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R KS+S+E TFS T D+A L L +E + +++++ GRT+TLKLK
Sbjct: 231 TVNPCREAKSVSAENTFSTDTADRARLAAWLLHQSERVGRELRRDNQSGRTITLKLKFND 290
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
F TR+ TL +S I A LL+AE LP LRLIG+ V+ F +
Sbjct: 291 FRQITRSRTLPDPTASDTVIYAVAKELLEAEPLPKPLRLIGVGVSNFGNE 340
>gi|425056854|ref|ZP_18460293.1| putative DNA polymerase IV [Enterococcus faecium 504]
gi|403041417|gb|EJY52432.1| putative DNA polymerase IV [Enterococcus faecium 504]
Length = 373
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQANIWESDQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 190 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 248 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 307 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|91223441|ref|ZP_01258706.1| DNA polymerase IV [Vibrio alginolyticus 12G01]
gi|91191527|gb|EAS77791.1| DNA polymerase IV [Vibrio alginolyticus 12G01]
Length = 356
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 151/301 (50%), Gaps = 32/301 (10%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+ RG S
Sbjct: 68 ALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYLDVTDSTACRG-SAT 126
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P ++ V I SLP+
Sbjct: 127 LIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEK--VQEVIDSLPL 184
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 184
I G+GKV+ L G CE++ L F A + G+ +
Sbjct: 185 ENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW-QRSHGIDNREVVV 242
Query: 185 ARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGLRGRTL 231
R RKS+ ERTFS V E+K LY +L + E S D + K+G
Sbjct: 243 ERERKSVGVERTFSQNIATYDECWQVIEEK--LYPELEKRLERASPDKSIIKQG------ 294
Query: 232 TLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKV 290
+K+K A F++ T + Q + + +L+ +LK + +RL+GL V ED+
Sbjct: 295 -IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIRLLGLNVMLKPEDQA 350
Query: 291 R 291
R
Sbjct: 351 R 351
>gi|409098882|ref|ZP_11218906.1| DNA-directed DNA polymerase [Pedobacter agri PB92]
Length = 366
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 164/290 (56%), Gaps = 15/290 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A +LCP IFV F Y+ S R++F +Y SLDEAYLD+TE + GI S
Sbjct: 70 AYQLCPTAIFVYPRFDAYSSVSKSIREIFSRYTDIIEPLSLDEAYLDVTE--DKLGIGSA 127
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
I+IA+ ++ ++ E LT SAGV+ N+ +AKV SD+NKP+G F+ P+ + F+ L
Sbjct: 128 IDIAKSIKDAIKNELNLTASAGVSINKFVAKVASDMNKPDGLTFIGPS---KIKAFMEKL 184
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTN 181
P+ K G+GKVT ++ I+T ++ L + LL F S F+ + G+
Sbjct: 185 PVEKFFGVGKVTAAKMK-AMQIHTGSDLKNLSESQLLSQ-FGKS-GKFYYKIVRGIDDRP 241
Query: 182 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
R KS+ +E T + T + ++++ L +I+E ++ ++K L+G+T+TLK+K F
Sbjct: 242 VRANRETKSVGAEDTLAEDTNEDSVMHDLLKQISETVAKRLEKYQLKGKTVTLKIKFEDF 301
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVSLRLIGLRVTQFNED 288
++ TR+ + I +E+I A LL A + + +RL+G+ +++F ++
Sbjct: 302 KLITRSRSFPLAIHKAENIYAEAIKLLNDANIGSLKVRLLGITLSRFYDE 351
>gi|241258700|ref|YP_002978584.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240863170|gb|ACS60833.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 365
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 152/294 (51%), Gaps = 11/294 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP+LIFV F Y S R VF +Y P SLDEAYLD+TE +
Sbjct: 66 MPSVTAQRKCPDLIFVKPRFDVYKAVSLQIRTVFAEYTPMIEPLSLDEAYLDVTENLKGM 125
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + GLT SAG++ N+ LAK+ SD NKP+GQFV+ P + A F
Sbjct: 126 EIA-TEIAAEIRAKIKATTGLTASAGISYNKFLAKMASDQNKPDGQFVITPKNGPA---F 181
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ LP++K G+G T ++ + GI T ++ ++ L F S +F + G+
Sbjct: 182 VERLPVKKFHGVGPATAEKMQRL-GIETGADLKERTLDFLVEHFGKS-GPYFYGIARGID 239
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKSI +E TFS R+ L + + + + + +T+TLK+K
Sbjct: 240 NRQVKPDRVRKSIGAEDTFSQDIHSFEPAREGLQPLISKVWSYCEANEIGAKTVTLKVKY 299
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
A F TR+ T+ + + D+ + +LL P +RL+G+ ++ + +
Sbjct: 300 ADFSQITRSKTVPAPLPAITDLDEVVDLLLAPIFPPRKGIRLLGVTLSSLEKRR 353
>gi|47096619|ref|ZP_00234207.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
str. 1/2a F6854]
gi|254912534|ref|ZP_05262546.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936861|ref|ZP_05268558.1| DNA polymerase IV [Listeria monocytogenes F6900]
gi|386047627|ref|YP_005965959.1| DNA polymerase IV [Listeria monocytogenes J0161]
gi|47015004|gb|EAL05949.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
serotype 1/2a str. F6854]
gi|258609456|gb|EEW22064.1| DNA polymerase IV [Listeria monocytogenes F6900]
gi|293590519|gb|EFF98853.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345534618|gb|AEO04059.1| DNA polymerase IV [Listeria monocytogenes J0161]
Length = 356
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|431183686|ref|ZP_19499994.1| DNA polymerase IV [Enterococcus faecium E1620]
gi|430573272|gb|ELB12096.1| DNA polymerase IV [Enterococcus faecium E1620]
Length = 376
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 190 ALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 248 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 307 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|424762996|ref|ZP_18190475.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|431763831|ref|ZP_19552379.1| DNA polymerase IV [Enterococcus faecium E3548]
gi|402423596|gb|EJV55806.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|430621655|gb|ELB58407.1| DNA polymerase IV [Enterococcus faecium E3548]
Length = 373
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 29/295 (9%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAVFSHSTADFFLSVGL 175
+LPI K G+GK T + ++ GI T C EM+ L F + V
Sbjct: 190 TLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRNFGKMGYSLYRKVR- 242
Query: 176 GLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
G+ + R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ L
Sbjct: 243 GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQKHGKTVVL 301
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
K++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 302 KVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|303237162|ref|ZP_07323732.1| putative DNA polymerase IV [Prevotella disiens FB035-09AN]
gi|302482549|gb|EFL45574.1| putative DNA polymerase IV [Prevotella disiens FB035-09AN]
Length = 361
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 21/299 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP L+ V F KY S ++F +Y SLDEA+LD++E R
Sbjct: 64 MPLSQALKRCPNLLIVAPHFEKYKKVSRQVHEIFHRYTDLVEPISLDEAFLDVSE-NRAN 122
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ ++A +++ ++ E GLT SAGV+ N+ LAK+ SD KPNG F++ ++ + FI
Sbjct: 123 IVLAKDVALKIKEEIFAETGLTASAGVSYNKFLAKIASDYRKPNGIFIVHPEKS--LNFI 180
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
+ LPI K G+G T + + GI T +++ Q + L VF A F+ + G+
Sbjct: 181 AELPIEKFWGVGHKTAETMHQM-GIFTGKQLRQVSLAHLTQVFGKMGAVFY-NFSRGIDE 238
Query: 180 TNTPQARFRKSISSERTFS---VTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
R RKS+ E+TF E K L LY + E+ + LS K GRTLTLK
Sbjct: 239 RPVEAYRERKSVGCEQTFMEDITGEIKILIELYHIVIELVKRLS----KSKFEGRTLTLK 294
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVTQFNEDK 289
+K ++ +R+VT + S +DIL A LLK P+ RLIGL V+ E K
Sbjct: 295 IKWSATSQISRSVTTDHILRSKDDILPLAKNLLKQTEYKHRPI--RLIGLSVSGEMEGK 351
>gi|418636789|ref|ZP_13199128.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
gi|374840485|gb|EHS03978.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
Length = 359
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 13/288 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP+ +V + KY S+ +F Y SLDEAYLDIT + R
Sbjct: 59 MPMSQAHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V +
Sbjct: 118 DLPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYENVHKIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK +E I+ GI +++ QK L +F + + G+
Sbjct: 176 MALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY-NKARGIDD 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D +L +K+ E++ + + K +T+T+K+KT
Sbjct: 234 SPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 282
FE ++ ++L+ I S DI + + +L AEL + +RLIG+ V
Sbjct: 293 FKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPEMPIRLIGVTV 339
>gi|254374392|ref|ZP_04989874.1| hypothetical protein FTDG_00559 [Francisella novicida GA99-3548]
gi|151572112|gb|EDN37766.1| hypothetical protein FTDG_00559 [Francisella novicida GA99-3548]
Length = 349
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 130/229 (56%), Gaps = 13/229 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASTVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + TC + LQ+ SL L F + + S G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNLY-SYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 224
+ R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|46908202|ref|YP_014591.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. F2365]
gi|405753195|ref|YP_006676660.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2378]
gi|67460308|sp|Q71Y46.1|DPO4_LISMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|46881472|gb|AAT04768.1| putative DNA-damage-inducible protein P [Listeria monocytogenes
serotype 4b str. F2365]
gi|404222395|emb|CBY73758.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2378]
Length = 356
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|451970837|ref|ZP_21924061.1| DNA polymerase IV [Vibrio alginolyticus E0666]
gi|451933254|gb|EMD80924.1| DNA polymerase IV [Vibrio alginolyticus E0666]
Length = 356
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 151/301 (50%), Gaps = 32/301 (10%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+ RG S
Sbjct: 68 ALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYLDVTDSTACRG-SAT 126
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P ++ V I SLP+
Sbjct: 127 LIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEK--VQEVIDSLPL 184
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 184
I G+GKV+ L G CE++ L F A + G+ +
Sbjct: 185 ENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW-QRSHGIDNREVVV 242
Query: 185 ARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGLRGRTL 231
R RKS+ ERTFS V E+K LY +L + E S D + K+G
Sbjct: 243 ERERKSVGVERTFSQNIATYGECWQVIEEK--LYPELEKRLERASPDKSIIKQG------ 294
Query: 232 TLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKV 290
+K+K A F++ T + Q + + +L+ +LK + +RL+GL V ED+
Sbjct: 295 -IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIRLLGLNVMLKPEDQA 350
Query: 291 R 291
R
Sbjct: 351 R 351
>gi|159039002|ref|YP_001538255.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
gi|157917837|gb|ABV99264.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
Length = 419
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 138/284 (48%), Gaps = 7/284 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR LCP +F+P DFT YT S ++F P SLDEA+LD+ R
Sbjct: 78 MPTARARALCPHAVFLPPDFTAYTTASRTVMQIFQDVTPLVEPLSLDEAFLDVAGAQRLF 137
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G IA +R V E GLTCS GVA ++ +AK+ S KP+G V+P R V+ F+
Sbjct: 138 GQPS-AIARLIRERVATEVGLTCSVGVASSKFVAKLGSTRAKPDGMLVVPTAR--VLDFL 194
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
LP+ + G+G+ + LR G+ T E+ Q +L + A + G
Sbjct: 195 HPLPVEALWGVGERSAETLRR-LGLTTVGELAQAPDGMLRRALGTAAARHLRELAWGKDP 253
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI +E TF D+ + R L +AE + A +++ G GRT+ LK++ A
Sbjct: 254 RRVTSEREDKSIGAEVTFDADVTDRREIRRALLGLAEKVGARLRRSGQVGRTVALKVRLA 313
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 281
F +R+ +L ++ A L A P +RL+G+R
Sbjct: 314 DFRTVSRSRSLDVPTDVGREMFDTAWALYTALDPGEPIRLVGVR 357
>gi|47093298|ref|ZP_00231068.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
str. 4b H7858]
gi|226224573|ref|YP_002758680.1| DNA-damage-inducible protein dinP (DNA polymerase IV (Pol IV))
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254825535|ref|ZP_05230536.1| DNA polymerase IV [Listeria monocytogenes FSL J1-194]
gi|254931859|ref|ZP_05265218.1| DNA polymerase IV [Listeria monocytogenes HPB2262]
gi|254992047|ref|ZP_05274237.1| DNA polymerase IV [Listeria monocytogenes FSL J2-064]
gi|255522144|ref|ZP_05389381.1| DNA polymerase IV [Listeria monocytogenes FSL J1-175]
gi|300763720|ref|ZP_07073717.1| DNA-damage-inducible protein P [Listeria monocytogenes FSL N1-017]
gi|386732710|ref|YP_006206206.1| DNA polymerase IV [Listeria monocytogenes 07PF0776]
gi|404281580|ref|YP_006682478.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2755]
gi|404287398|ref|YP_006693984.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405750322|ref|YP_006673788.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes ATCC
19117]
gi|405756128|ref|YP_006679592.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2540]
gi|406704753|ref|YP_006755107.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
L312]
gi|424823729|ref|ZP_18248742.1| DNA polymerase IV [Listeria monocytogenes str. Scott A]
gi|259645684|sp|C1KWR9.1|DPO4_LISMC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|47018318|gb|EAL09081.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
serotype 4b str. H7858]
gi|225877035|emb|CAS05744.1| Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol
IV)) [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|293583411|gb|EFF95443.1| DNA polymerase IV [Listeria monocytogenes HPB2262]
gi|293594777|gb|EFG02538.1| DNA polymerase IV [Listeria monocytogenes FSL J1-194]
gi|300515456|gb|EFK42506.1| DNA-damage-inducible protein P [Listeria monocytogenes FSL N1-017]
gi|332312409|gb|EGJ25504.1| DNA polymerase IV [Listeria monocytogenes str. Scott A]
gi|384391468|gb|AFH80538.1| DNA polymerase IV [Listeria monocytogenes 07PF0776]
gi|404219522|emb|CBY70886.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes ATCC
19117]
gi|404225328|emb|CBY76690.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2540]
gi|404228215|emb|CBY49620.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2755]
gi|404246327|emb|CBY04552.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406361783|emb|CBY68056.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
L312]
gi|441471756|emb|CCQ21511.1| DNA polymerase IV [Listeria monocytogenes]
gi|441474889|emb|CCQ24643.1| DNA polymerase IV [Listeria monocytogenes N53-1]
Length = 356
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|352089863|ref|ZP_08954168.1| DNA-directed DNA polymerase [Rhodanobacter sp. 2APBS1]
gi|351679031|gb|EHA62174.1| DNA-directed DNA polymerase [Rhodanobacter sp. 2APBS1]
Length = 367
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 147/300 (49%), Gaps = 9/300 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+LIFVP DF +Y S R++F ++ SLDEAYLD+T
Sbjct: 68 MPAIRAERLCPQLIFVPPDFVRYKAVSRQVREIFARHTELIEPLSLDEAYLDVTTTKSGL 127
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S AE +R ++ +E LT SAGVAPN+ LAK+ SD KP+G FV+ + V F+
Sbjct: 128 G-SATATAEAIREAIRKETRLTASAGVAPNKFLAKIASDFRKPDGLFVIRPQQ--VEAFL 184
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP+ ++ G+GKV E L GI T E+ + G+
Sbjct: 185 TPLPVGRLPGVGKVMEAKL-AALGIATVGELRAFAQAELEQRFGRWGRRLHELAQGIDEH 243
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE-GLRGRTLTLKLKTAS 239
R +S+E TF L + ++AE A Q+E G RT+ LKLKTA
Sbjct: 244 PVQPQRPTLQVSAEDTFEHDLRLDELEPHIRQLAEKAWAGHQREHGRVARTVVLKLKTAD 303
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLL-KAELPV--SLRLIGLRVTQF-NEDKVRAPSD 295
F TR++T S+ ++ A L + + P RL+G+ + F + D +A +D
Sbjct: 304 FHTLTRSLTPPTRPMSAAELADIACALRERVQRPADSRYRLVGVGLAGFVDRDSYQAQAD 363
>gi|208779376|ref|ZP_03246722.1| ImpB/MucB/SamB family protein [Francisella novicida FTG]
gi|208745176|gb|EDZ91474.1| ImpB/MucB/SamB family protein [Francisella novicida FTG]
Length = 349
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 130/229 (56%), Gaps = 13/229 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASTVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + TC + LQ+ SL L F + + S G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNLY-SYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 224
+ R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|254827139|ref|ZP_05231826.1| DNA polymerase IV [Listeria monocytogenes FSL N3-165]
gi|386044283|ref|YP_005963088.1| DNA polymerase IV [Listeria monocytogenes 10403S]
gi|404411276|ref|YP_006696864.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC5850]
gi|258599522|gb|EEW12847.1| DNA polymerase IV [Listeria monocytogenes FSL N3-165]
gi|345537517|gb|AEO06957.1| DNA polymerase IV [Listeria monocytogenes 10403S]
gi|404231102|emb|CBY52506.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC5850]
Length = 356
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|56160414|gb|AAV80821.1| polymerase kappa isoform 5 [Mus musculus]
Length = 275
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 84/127 (66%), Gaps = 5/127 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ E + + + G G+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 211 -----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 265
Query: 121 SSLPIRK 127
LPIRK
Sbjct: 266 KDLPIRK 272
>gi|418719523|ref|ZP_13278722.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str. UI
09149]
gi|410743566|gb|EKQ92308.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str. UI
09149]
Length = 330
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 18/298 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P+ IFV F Y SD R++F +Y SLDE YLD+T +R
Sbjct: 27 MPCSKAAQLAPQAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKR 84
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V+
Sbjct: 85 NIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTIVLPDD---VIA 141
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LP+ G+GKVT ++++ GI+ +++ K ++ + G
Sbjct: 142 FIDPLPVNSFHGVGKVTAQKMKEL-GIHIGKDLRAKNIDELVQHFGKMGIYYYKISRGED 200
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E TF + D+ L ++L E+A + ++K G+TLTLK+K
Sbjct: 201 EREVNSCRERKSLGAENTFDQDKIDREDLLQQLREVAIEVERRLKKRNFAGKTLTLKIKF 260
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHAS------VLLKAELPVS---LRLIGLRVTQFN 286
F +RTR+ TL + I + ++I A+ K E VS +RL+G+ ++ N
Sbjct: 261 QDFSLRTRSRTLSEPIFAVDEIYSVAAELFEEFFEFKNEKQVSVKAIRLLGINLSHPN 318
>gi|347537985|ref|YP_004845409.1| DNA polymerase IV [Pseudogulbenkiania sp. NH8B]
gi|345641162|dbj|BAK74995.1| DNA polymerase IV [Pseudogulbenkiania sp. NH8B]
Length = 359
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 152/301 (50%), Gaps = 20/301 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP L+ VP DF +Y S ++ + SLDEAYLD++ +G + +
Sbjct: 66 ALHLCPRLLIVPPDFARYKTASQQILAIYQDFTELVEPLSLDEAYLDVSGRPHYQGSASL 125
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 124
+AE +R+ + +E G+T SAG+APN+ LAKV SD NKP+GQFV+ P D V F+ +LP
Sbjct: 126 -MAEAIRSRIRDEVGITASAGIAPNKFLAKVASDWNKPDGQFVIRPED---VDAFVLALP 181
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNT 182
+ KI G+G VT L G+ CE++ +G L + H + ++ G+
Sbjct: 182 VEKIPGVGAVTASRLH-ALGVRHCEDV--RGWELAELVRHFGRFGERLHALARGIDPRPV 238
Query: 183 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG-RTLTLKLKTASF 240
R RKSIS E T++V D KL E+ E L+ +++ G R L++KLK A F
Sbjct: 239 SIERLRKSISVEETYAVDLPDLDACLAKLPELLERLAHRLERAGQPAFRGLSVKLKFADF 298
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 300
T+ Q S D L + A +RL+G+ V +D ++P Q
Sbjct: 299 ---TQTTVEQAGQQLSRDTLAALLQVGHARGAQPVRLLGVGVRLAADD-----TEPRQLA 350
Query: 301 L 301
L
Sbjct: 351 L 351
>gi|385784018|ref|YP_005760191.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|418413694|ref|ZP_12986910.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|339894274|emb|CCB53543.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|410877332|gb|EKS25224.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 359
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 152/288 (52%), Gaps = 13/288 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP+ +V + KY S+ +F Y SLDEAYLDIT + R
Sbjct: 59 MPMSQAHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V +
Sbjct: 118 DLPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYENVHKIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK +E I+ GI +++ QK L +F + + G+
Sbjct: 176 MALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY-NKARGIDD 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D +L +K+ E++ + + K +T+T+K+KT
Sbjct: 234 SPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 282
FE ++ ++L+ I S DI + + +L AEL +RLIG+ V
Sbjct: 293 FKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLIGVTV 339
>gi|404414053|ref|YP_006699640.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC7179]
gi|404239752|emb|CBY61153.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC7179]
Length = 356
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTKQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|161594047|ref|NP_904033.2| DNA polymerase IV [Chromobacterium violaceum ATCC 12472]
Length = 379
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 12/240 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCPEL+ VP D +Y S ++ +Y SLDEAYLD+T ERG S
Sbjct: 66 ALRLCPELLIVPPDMARYRLASQQIMAIYQRYTEVIEPLSLDEAYLDVTGQPHERG-SAT 124
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 124
+AE +R + +E G+T SAG+APN+ LAKV SD NKP+GQ+++ P D + F++ LP
Sbjct: 125 LMAEAIRRQIRDEVGITASAGIAPNKFLAKVASDWNKPDGQYLIRPRD---IDAFVAVLP 181
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNT 182
+ KI G+G+VT L + GI +C ++ + +F H S + L++ G
Sbjct: 182 VEKIHGVGRVTAERLHRL-GIRSCGDLRRWSP--ADLFRHFGSFGERLLALAHGRDERPV 238
Query: 183 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG-RTLTLKLKTASF 240
R RK+IS E T++ D A KL E+ + L A + + G + L++KLK F
Sbjct: 239 STDRSRKTISVEETYAQDLPDLASCLSKLPELVDRLQARLARSGSPAFKGLSVKLKFDDF 298
>gi|418662812|ref|ZP_13224345.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035502|gb|EHS28624.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
Length = 356
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV + F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSHFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|430840671|ref|ZP_19458594.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|431741951|ref|ZP_19530850.1| DNA polymerase IV [Enterococcus faecium E2039]
gi|430494877|gb|ELA71095.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|430600799|gb|ELB38426.1| DNA polymerase IV [Enterococcus faecium E2039]
Length = 373
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 29/295 (9%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAVFSHSTADFFLSVGL 175
+LPI K G+GK T + ++ GI T C EM+ L F + V
Sbjct: 190 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRNFGKMGYSLYRKVR- 242
Query: 176 GLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
G+ + R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ L
Sbjct: 243 GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQKHGKTVVL 301
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
K++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 302 KVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|312897481|ref|ZP_07756905.1| putative DNA polymerase IV [Megasphaera micronuciformis F0359]
gi|310621542|gb|EFQ05078.1| putative DNA polymerase IV [Megasphaera micronuciformis F0359]
Length = 395
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 162/312 (51%), Gaps = 27/312 (8%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG- 64
AR+LCP+ IF+P Y S RK+F Y P+ SLDEA+LDI+ G+ G
Sbjct: 57 ARQLCPDGIFLPPRIAYYRTISRQIRKIFEGYSPDIEPLSLDEAFLDIS------GLHGH 110
Query: 65 ----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+E+ ++ + E+ GL SAG+ PN+ LAK+ SD++KP+G +P + A M +
Sbjct: 111 YKDVLEVGRAVKRDIKEQTGLVASAGIGPNKFLAKLASDLDKPDGLVCIPYGKEAEM--L 168
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP+RKI G+GKVTE+ L G +T + + A+ + G
Sbjct: 169 APLPVRKIWGVGKVTENRLLSA-GYDTIGSIAAASPDKLRPLVGNQAERLYELAHGRDYR 227
Query: 181 NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
A+ KSI +E+T+ + ED + R+L +AE ++ ++K GL GRT+TLK++
Sbjct: 228 RVETAQQVKSIGNEQTYEQDLVLQED---VDRQLRLLAEEVAYRLRKHGLMGRTMTLKIR 284
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRVTQFN----EDKV 290
F TR+ + + +E+ L ++ L A+ S+RL+G+ V++ +D +
Sbjct: 285 YNDFTTETRSESSESMGLYTEEQLYFSARKLYAKKTRKGSVRLLGVTVSKLQTVIIQDSL 344
Query: 291 RAPSDPTQKTLT 302
A T+K L
Sbjct: 345 FAEEPTTKKRLA 356
>gi|375266450|ref|YP_005023893.1| DNA polymerase IV [Vibrio sp. EJY3]
gi|369841770|gb|AEX22914.1| DNA polymerase IV [Vibrio sp. EJY3]
Length = 354
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 149/306 (48%), Gaps = 32/306 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+
Sbjct: 61 MPTARALQLCPNLVVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYLDVTDATACH 120
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IAE +R ++ E LT SAGVAP + LAKV SD+NKPNGQFV+P D+ V +
Sbjct: 121 G-SATLIAEAIRKDIWNELSLTASAGVAPIKFLAKVASDMNKPNGQFVIPPDK--VQQVV 177
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
LP+ KI G+GKV+ L G CE++ L F A + G+
Sbjct: 178 DKLPLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW-KRSQGIDD 235
Query: 180 TNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGL 226
R RKS+ ERTFS V E K LY +L + E S D + K+G
Sbjct: 236 REVVVERERKSVGVERTFSQNISTYDECWQVIESK--LYPELEKRLERASPDKSIIKQG- 292
Query: 227 RGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF 285
+K+K A F++ T + Q ++ + +LK +LK + +RL+GL V
Sbjct: 293 ------IKVKFADFQLTTIEHIHPQLELNDFKTLLKD---ILKRQQGREIRLLGLSVMLK 343
Query: 286 NEDKVR 291
E + R
Sbjct: 344 PETQAR 349
>gi|417780225|ref|ZP_12427990.1| ImpB/MucB/SamB family protein [Leptospira weilii str. 2006001853]
gi|410779619|gb|EKR64232.1| ImpB/MucB/SamB family protein [Leptospira weilii str. 2006001853]
Length = 352
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 161/300 (53%), Gaps = 22/300 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P+ IFVP F Y S+ R++F +Y SLDE YLD+T ++
Sbjct: 49 MPCSKAAQLAPQAIFVPPRFKVYKEVSNRIREIFLEYTDRVEMLSLDEGYLDVT--FNKK 106
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I + IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V+
Sbjct: 107 NIPFAVTIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VIA 163
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLG 176
FI LP+ G+GKVT ++++ I T +++ K + + H ++ + G
Sbjct: 164 FIDPLPVSSFHGVGKVTAQKMKEL-EIYTGKDLRAKN--IDELIQHFGKMGIYYYKISRG 220
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
R RKS+ +E TF + D+ L ++L E+A + +++ G+TLTLK+
Sbjct: 221 EDEREVESCRERKSLGAENTFDQDKIDREDLLQQLREVAVEVERRLKERDFAGKTLTLKI 280
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQFN 286
K F++RTR+ TL + I S++++ A+ L + + ++RL+G+ ++ N
Sbjct: 281 KFQDFKLRTRSKTLSEPIFSADELYSVAAELFEEFFEIKNGKQVSIKAIRLLGINLSHPN 340
>gi|257066126|ref|YP_003152382.1| DNA-directed DNA polymerase [Anaerococcus prevotii DSM 20548]
gi|256798006|gb|ACV28661.1| DNA-directed DNA polymerase [Anaerococcus prevotii DSM 20548]
Length = 345
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 25/303 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFC---KYDPNFMAASLDEAYLDITEVC 57
MP FIA++LCP LI +P D + YY +++VF +Y S+DEAYL +
Sbjct: 56 MPVFIAKELCPNLILLPVD---HKYYRKKSKEVFSLVKEYAKLMEQVSVDEAYLLVETDS 112
Query: 58 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 117
++ +A +L+ V + G+ S G++ N+ LAK+ SD KP+G + + +
Sbjct: 113 PKK------LARKLQEEVLRKTGIGISIGISYNKFLAKLASDWQKPHGITQIRKEDLDY- 165
Query: 118 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLG 176
F+ ++ + K+ GIGK T L + GI E++L+ L F A + V G
Sbjct: 166 -FLPNISVNKVHGIGKKTSERLNKI-GIYKVEDLLKLDYEYLIDNFGKQGA-YIYHVIRG 222
Query: 177 LGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
+ +R RKSI ERTF+ T D A+L L ++E++ +M + ++G+T+ LK+
Sbjct: 223 VDDRKINPSRVRKSIGKERTFAQNTNDMAILTSYLKNLSELIEDEMDIKNIQGKTVNLKI 282
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQFNEDKVR 291
K A F+ TR++TLQ+ I ++DI A LL K E+ LRLIG+ ++ E K+
Sbjct: 283 KDAKFKNHTRSITLQEPIYRAKDIYNEALSLLEDLHKGEM---LRLIGISLSNLQERKLN 339
Query: 292 APS 294
S
Sbjct: 340 QLS 342
>gi|289550388|ref|YP_003471292.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
gi|289179920|gb|ADC87165.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
Length = 359
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 152/288 (52%), Gaps = 13/288 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP+ +V + KY S+ +F Y SLDEAYLDIT + R
Sbjct: 59 MPMSQAHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V +
Sbjct: 118 DLPASQIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYENVHKIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK +E I+ GI +++ QK L +F + + G+
Sbjct: 176 MALDIGDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY-NKARGIDD 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D +L +K+ E++ + + K +T+T+K+KT
Sbjct: 234 SPVKSSRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 282
FE ++ ++L+ I S DI + + +L AEL +RLIG+ V
Sbjct: 293 FKFETLSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLIGVTV 339
>gi|431099276|ref|ZP_19496442.1| DNA polymerase IV [Enterococcus faecium E1613]
gi|430570777|gb|ELB09716.1| DNA polymerase IV [Enterococcus faecium E1613]
Length = 373
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 29/295 (9%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPKAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAVFSHSTADFFLSVGL 175
+LPI K G+GK T + ++ GI T C EM+ L F + V
Sbjct: 190 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRNFGKMGYSLYRKVR- 242
Query: 176 GLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
G+ + R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ L
Sbjct: 243 GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQKHGKTVVL 301
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
K++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 302 KVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|332286231|ref|YP_004418142.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7]
gi|330430184|gb|AEC21518.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7]
Length = 387
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 153/292 (52%), Gaps = 19/292 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A L PE I +P DF Y + S L + P+ +DE Y+D+++ + +
Sbjct: 89 AALLAPEAILLPVDFKAYRHCSQLFKAAVAGIAPHIEDRGIDEIYIDLSKHPDDT----L 144
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 124
E+A ++ +V++ GL+CS G++PN+LL+K+ S+++KP+G ++ P D A I LP
Sbjct: 145 ELARNIKQAVFQATGLSCSIGISPNKLLSKIASELDKPDGITIIGPGDLEA---RIWPLP 201
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADFFLSVGLGLGSTNTP 183
+ K+ GIG L GINT E+ LL ++F S A + ++V G+ N P
Sbjct: 202 VSKVNGIGPKANTRLAAA-GINTIAELAAAPPELLQSLFGLSYAQWLMNVARGI--DNRP 258
Query: 184 QARFR--KSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ KSIS E TF V D+ +L + ++ E L D+ ++G GRT+ +KL+
Sbjct: 259 VVTYSEPKSISRETTFERDLHVQHDRKVLSVQFLQLCEQLEGDLLRKGYVGRTIGIKLRF 318
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNED 288
+F TR +TL S++ I A LK EL +RL+G+R++ D
Sbjct: 319 DNFRTVTRDLTLPGPTGSAQAIHHAAGQCLKRIELKHRIRLLGVRISGLQPD 370
>gi|430826869|ref|ZP_19445038.1| DNA polymerase IV [Enterococcus faecium E0164]
gi|430444618|gb|ELA54453.1| DNA polymerase IV [Enterococcus faecium E0164]
Length = 372
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 76 AYELCPQAIFKPGDHHKYSDISRQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 131
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 132 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 188
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 189 ALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMILIRNFGKMGYSLYRKVR-GIHDS 246
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 247 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 305
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 306 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 355
>gi|257138591|ref|ZP_05586853.1| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 378
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 159/299 (53%), Gaps = 27/299 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R
Sbjct: 64 MSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCH 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F
Sbjct: 124 G-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAF 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLG 176
+++LP+RK+ G+GKVT L D GI TC E L+ SL H F + G
Sbjct: 180 VAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARG 235
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTL 231
+ + RKS+S E T+ +D A L + AEI +L A +++ G R L
Sbjct: 236 IDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKL 293
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+K++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 294 YVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 346
>gi|424714844|ref|YP_007015559.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. LL195]
gi|424014028|emb|CCO64568.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. LL195]
Length = 368
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 72 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 129
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 130 GMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA--- 186
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 187 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 245
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 246 NNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKL 303
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 304 RYSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVTNL 355
>gi|417110995|ref|ZP_11963947.1| DNA-directed DNA polymerase protein [Rhizobium etli CNPAF512]
gi|327188219|gb|EGE55439.1| DNA-directed DNA polymerase protein [Rhizobium etli CNPAF512]
Length = 362
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 151/291 (51%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFV F Y S R++F +Y SLDEAYLD+T +
Sbjct: 64 MPSVTAKRKCPELIFVAPRFDVYKAVSQQIREIFAEYTAVIEPLSLDEAYLDVTHNLKGM 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 124 EIA-TEIALEIRAKIKQATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGL 177
+ +L ++K G+G T + + GI+T ++ KG L + H + +F + G+
Sbjct: 180 VEALLVKKFHGVGPATADKMHRL-GIDTGADL--KGKTLEFLVEHFGKSGPYFHDIARGI 236
Query: 178 GSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ +E TFS R+ L + E + A + G+ +T+TLK+K
Sbjct: 237 DERQVKPNRVRKSVGAEDTFSQDLHAYEPARQGLQPLIEKVWAYCEANGIGAKTVTLKVK 296
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
A F TR+ T+ + ++ + S++L P +RL+G+ ++
Sbjct: 297 YADFNQITRSKTVPSLLRGIMELEEIISLMLAPIFPPRKGIRLLGITLSSL 347
>gi|406590293|ref|ZP_11064662.1| DNA polymerase IV [Enterococcus sp. GMD1E]
gi|404469362|gb|EKA14168.1| DNA polymerase IV [Enterococcus sp. GMD1E]
Length = 372
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 155/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A ++CP+ IF P D KY+ S R+VF +Y S+DEAYLD+TE C+
Sbjct: 76 AYEICPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLDVTENKINCK---- 131
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 132 SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 188
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + +L F + V G+ +
Sbjct: 189 ALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGYSLYRKVR-GIHDS 246
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 247 PVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 305
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 306 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 355
>gi|418737843|ref|ZP_13294240.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410747037|gb|EKQ99943.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 330
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 155/298 (52%), Gaps = 18/298 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P+ IFV F Y SD R++F +Y SLDE YLD+T +R
Sbjct: 27 MPCSKAAQLAPQAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKR 84
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I + IA+E+R +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V+
Sbjct: 85 NIPFAVTIAKEIRAEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTIVLPDD---VIA 141
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LP+ G+GKVT ++++ GI+ +++ K ++ + G
Sbjct: 142 FIDPLPVNSFHGVGKVTAQKMKEL-GIHIGKDLRAKNIGELVQHFGKMGIYYYKISRGED 200
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E TF + D+ L ++L E+A + ++K G+TLTLK+K
Sbjct: 201 EREVNSCRERKSLGAENTFDQDKIDREDLLQQLREVAIEVERRLKKRNFAGKTLTLKIKF 260
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHAS------VLLKAELPVS---LRLIGLRVTQFN 286
F +RTR+ TL + I + ++I A+ K E VS +RL+G+ ++ N
Sbjct: 261 QDFSLRTRSRTLSEPIFAVDEIYSVAAELFEEFFEFKNEKQVSVKAIRLLGINLSHPN 318
>gi|167581305|ref|ZP_02374179.1| DNA polymerase IV [Burkholderia thailandensis TXDOH]
Length = 378
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 159/299 (53%), Gaps = 27/299 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R
Sbjct: 64 MSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCH 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F
Sbjct: 124 G-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAF 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLG 176
+++LP+RK+ G+GKVT L D GI TC E L+ SL H F + G
Sbjct: 180 VAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARG 235
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTL 231
+ + RKS+S E T+ +D A L + AEI +L A +++ G R L
Sbjct: 236 IDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKL 293
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+K++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 294 YVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 346
>gi|398827094|ref|ZP_10585309.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
gi|398220334|gb|EJN06787.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
Length = 353
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 143/286 (50%), Gaps = 13/286 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP LIFV Y S R++FC Y P SLDEAYLD+TE +
Sbjct: 57 MPSVTAARKCPSLIFVKPRLEVYRDVSQQIREIFCDYTPLVEPLSLDEAYLDVTENLKGM 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
I+ EIA E+R + GLT SAG++ N+ LAK+ SD+NKPNGQ V+P +FI
Sbjct: 117 EIA-TEIASEIRARILAVTGLTASAGISYNKFLAKIASDLNKPNGQAVIPPKTGP--SFI 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
LP++K G+G T + + GI T ++ Q+ L F + A +F + G+ +
Sbjct: 174 QRLPVKKFHGVGPATAEKMHQL-GIETGADLKQRSFEFLSQHFGKAGA-YFYGIARGIDN 231
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ---KEGLRGRTLTLKLK 236
+ R RKSI +E TF ED L ++ ++S Q +T+TLK+K
Sbjct: 232 RDVQPDRKRKSIGAEDTFP--EDVFELETAREQLHPLVSKVCQFCSNNDTGAKTVTLKVK 289
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 280
F+ TR+ T + + LL++ P +RL+G+
Sbjct: 290 YFDFQTITRSRTSPAASRTEASVWIILEPLLQSVFPTRKGIRLLGV 335
>gi|423098874|ref|ZP_17086582.1| putative DNA polymerase IV [Listeria innocua ATCC 33091]
gi|370794701|gb|EHN62464.1| putative DNA polymerase IV [Listeria innocua ATCC 33091]
Length = 356
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 151/292 (51%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIKTGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|387824674|ref|YP_005824145.1| DNA polymerase IV [Francisella cf. novicida 3523]
gi|332184140|gb|AEE26394.1| DNA polymerase IV [Francisella cf. novicida 3523]
Length = 351
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 151/289 (52%), Gaps = 19/289 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V RE
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAIIRNIFYSFTDKVEPLSLDEAYLDVTDV-REY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V FI
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VNNFI 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGL 177
LP++K+ G+GKV + L+ + + TC + LQ+ SL A+ F + G+
Sbjct: 177 KDLPVKKLFGVGKVCQEKLKSM-NVETCLD-LQRLSL--AILIDKFGKFGNNLYNYARGI 232
Query: 178 GSTNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ RKS+S E T+ ED L KL + + L++ M +E + +
Sbjct: 233 DNREVNPIHIRKSVSVENTY--LEDLKTLEACLEKLPSLYDKLTSRMSEEHYKS---IVG 287
Query: 235 LKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRV 282
+ +VR +L + S + LK+ L + +RLIG+ V
Sbjct: 288 IVVKFTDVRFNKTSLTRVAKSLDKQTLKNLITELYQKQSQPIRLIGIGV 336
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 148/296 (50%), Gaps = 11/296 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP +V + F Y S ++F Y SLDEAYLDIT + R
Sbjct: 59 MPMSQAHKLCPNGYYVTSRFGAYREASQQIMEIFRSYTEIVEPMSLDEAYLDITHLVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V +
Sbjct: 118 DMPASRIANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYQNVHEIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
L I G+GK ++ ++ D GI T +++ K L +F + + G+ +
Sbjct: 176 MHLDIGDFPGVGKASKKVMHDN-GIFTGQDLYNKDEFELIRLFGKRGRGLY-NKARGIDN 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +ERTFS V +D +L RK+ E++ + + K G+T+T+K+KT
Sbjct: 234 NEVKATRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERLNKLQKSGKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVR 291
+E ++ +L+ + S DI A L + V +RLIG+ V + R
Sbjct: 293 FQYETLSKQTSLRDSVQSETDIYNIAYSLYNELKDPDVPIRLIGVTVGNLEQSSYR 348
>gi|296449696|ref|ZP_06891466.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
gi|296261420|gb|EFH08245.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
Length = 365
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 155/299 (51%), Gaps = 20/299 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++
Sbjct: 60 MPSAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVTK--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F
Sbjct: 118 NIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVITEEN--AQDF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVG 174
+ LP+ K G+GKVT + L+++ GI T C + + L +F + +
Sbjct: 176 LDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFA 229
Query: 175 LGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G+ R RKS+ +E T S + D+ L E+ E + ++ G+TLT
Sbjct: 230 RGIDDRPVEPNRVRKSVGAETTLSHNLNIDEEETRNILDELCEEVCHRLKSSEKFGKTLT 289
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVSLRLIGLRVTQFNEDK 289
LK+K F TR+++L+ YI DI + LL+ E+ +RL+G+ ++ ++ K
Sbjct: 290 LKIKYEDFTKITRSLSLEHYIDEYNDIRRGIDNLLRNVEMNGKQIRLLGVTISNLSDKK 348
>gi|421093754|ref|ZP_15554478.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200801926]
gi|410363737|gb|EKP14766.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200801926]
Length = 330
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 155/298 (52%), Gaps = 18/298 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +L P+ IFV F Y SD R++F +Y SLDE YLD+T +R
Sbjct: 27 MPCSKAAQLAPQAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKR 84
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
I + IA+E+R +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V+
Sbjct: 85 NIPFAVTIAKEIRAEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTIVLPDD---VIA 141
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
FI LP+ G+GKVT ++++ GI+ +++ K ++ + G
Sbjct: 142 FIDPLPVNSFHGVGKVTAQKMKEL-GIHIGKDLRAKNIDELVQHFGKMGIYYYKISRGED 200
Query: 179 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +E TF + D+ L ++L E+A + ++K G+TLTLK+K
Sbjct: 201 EREVNSCRERKSLGAENTFDQDKIDREDLLQQLREVAIEVERRLKKRNFAGKTLTLKIKF 260
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHAS------VLLKAELPVS---LRLIGLRVTQFN 286
F +RTR+ TL + I + ++I A+ K E VS +RL+G+ ++ N
Sbjct: 261 QDFSLRTRSRTLSEPIFAVDEIYSVAAELFEEFFEFKNEKQVSVKAIRLLGINLSHPN 318
>gi|314934060|ref|ZP_07841423.1| DNA polymerase IV [Staphylococcus caprae C87]
gi|313653171|gb|EFS16930.1| DNA polymerase IV [Staphylococcus caprae C87]
Length = 356
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 11/296 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP +V + F Y S ++F Y SLDEAYLDIT + R
Sbjct: 59 MPMSQAHKLCPNGYYVTSRFGAYREVSHQIMEIFRSYTEIVEPMSLDEAYLDITHLVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ IA +R ++E+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V +
Sbjct: 118 DMPASRIANYIRRDIFEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYQNVHEIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I + G+GK ++ ++ D GI T +++ K L +F + + G+ +
Sbjct: 176 MNLDIGEFPGVGKASKKVMHDN-GIFTGQDLYDKDEFELIRLFGKRGRGLY-NKARGIDN 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +ERTFS V +D +L RK+ E++ + + K G+T+T+K+KT
Sbjct: 234 NEVKATRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERLNKLQKSGKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVR 291
+E ++ +L+ + S DI A L + V +RLIG+ V + R
Sbjct: 293 FKYETLSKQTSLRDSVQSENDIYNIAYTLYSDLKDPDVPIRLIGVTVGNLEQSSYR 348
>gi|425743778|ref|ZP_18861848.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii WC-323]
gi|425493100|gb|EKU59347.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii WC-323]
Length = 355
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 146/287 (50%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A+KLCP+++ + +F KY S +F +Y SLDEAYLD+TE + S
Sbjct: 65 AKKLCPQVVVIEPNFEKYREVSAQIHHIFQQYTALIEPLSLDEAYLDVTENLKNIP-SAT 123
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG FV+ + V+ FI L +
Sbjct: 124 EVAAHIRADIFATTGLTASAGVAPNKFLAKIASDWNKPNGLFVIKPHQ--VLKFIQDLAL 181
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT+ L + ++T + LQK ++L F +L G+
Sbjct: 182 SKIPGVGKVTQERLSQL-NLHTLGD-LQKIEENVLVHHFGKYGKQLYL-YAQGVDHRPVK 238
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF +AE + + K+ L R +++KLK +F+V
Sbjct: 239 AERERQQISKEITFDDDYTLEQCRHAWQPLAEQVWRSLNKKQLSARGVSVKLKLKNFQVL 298
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQFN 286
+ + ++ + S +D+ + LL E+ + RL+G+ V Q
Sbjct: 299 QHSKSFKQALQSQQDLAQVVFQLLN-EMHIDPAFQFRLVGVGVYQLQ 344
>gi|16801148|ref|NP_471416.1| DNA polymerase IV [Listeria innocua Clip11262]
gi|22095622|sp|Q92A40.1|DPO4_LISIN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|16414583|emb|CAC97312.1| lin2082 [Listeria innocua Clip11262]
Length = 356
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 151/292 (51%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYQLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMKFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYKGQDSIRLIGLTVTNL 343
>gi|296877987|ref|ZP_06902006.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
gi|296431055|gb|EFH16883.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
Length = 366
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 155/299 (51%), Gaps = 20/299 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++
Sbjct: 61 MPSAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVTK--NKK 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F
Sbjct: 119 NIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVITEEN--AQDF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVG 174
+ LP+ K G+GKVT + L+++ GI T C + + L +F + +
Sbjct: 177 LDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFA 230
Query: 175 LGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G+ R RKS+ +E T S + D+ L E+ E + ++ G+TLT
Sbjct: 231 RGIDDRPVEPNRVRKSVGAETTLSHNLNIDEEETRNILDELCEEVCHRLKSSEKFGKTLT 290
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVSLRLIGLRVTQFNEDK 289
LK+K F TR+++L+ YI DI + LL+ E+ +RL+G+ ++ ++ K
Sbjct: 291 LKIKYEDFTKITRSLSLEHYIDEYNDIRRGIDNLLRNVEMNGKQIRLLGVTISNLSDKK 349
>gi|284802420|ref|YP_003414285.1| hypothetical protein LM5578_2176 [Listeria monocytogenes 08-5578]
gi|284995562|ref|YP_003417330.1| hypothetical protein LM5923_2127 [Listeria monocytogenes 08-5923]
gi|284057982|gb|ADB68923.1| hypothetical protein LM5578_2176 [Listeria monocytogenes 08-5578]
gi|284061029|gb|ADB71968.1| hypothetical protein LM5923_2127 [Listeria monocytogenes 08-5923]
Length = 356
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 151/292 (51%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|418058732|ref|ZP_12696699.1| DNA polymerase IV [Methylobacterium extorquens DSM 13060]
gi|373567718|gb|EHP93680.1| DNA polymerase IV [Methylobacterium extorquens DSM 13060]
Length = 408
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 161/316 (50%), Gaps = 33/316 (10%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M A++ CPEL+FV F Y S R +F ++ P SLDEAYLD+TE +
Sbjct: 111 MASVTAKRKCPELVFVKPRFEVYREVSMAIRAIFAEHTPIIEPLSLDEAYLDVTENL--K 168
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ + EIA E++T++ E LT SAGV+ + LAK+ SD KP+G FV+ RM F
Sbjct: 169 GLETATEIAREIKTAIRERLNLTASAGVSYQKFLAKIASDYRKPDGLFVI-TPRMGP-EF 226
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ +LP+ + GIG TE + + GI T ++ K + L F S A +F + G+
Sbjct: 227 VLTLPVGRFHGIGPATEAKMARL-GIATGADLKSKSLAFLQEHFGKSGA-YFHGIARGVD 284
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM----------LSADMQKEGLRG 228
R RKS+ +E TF R LA I EM + + G+R
Sbjct: 285 HRPVRPDRIRKSVGAENTFE---------RDLAGIEEMREHLQPIVDKVWSRCAATGVRC 335
Query: 229 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFN 286
RT+TLK+K + FE TR+ + + S +D+ A+ LL+ P+ L RL+G+ ++ +
Sbjct: 336 RTVTLKVKFSDFEQITRSRSTAVDVGSRDDLEGIAADLLRQLFPMRLGVRLLGVTMSGLD 395
Query: 287 EDKVRAPSDPTQKTLT 302
++ +P Q +L
Sbjct: 396 NER----EEPRQLSLA 407
>gi|227550409|ref|ZP_03980458.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|293379604|ref|ZP_06625741.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|431758358|ref|ZP_19546985.1| DNA polymerase IV [Enterococcus faecium E3083]
gi|227180468|gb|EEI61440.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|292641753|gb|EFF59926.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|430617416|gb|ELB54289.1| DNA polymerase IV [Enterococcus faecium E3083]
Length = 373
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 154/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + + L F + V G+ +
Sbjct: 190 TLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTLIRNFGKMGYSLYRKVR-GIHDS 247
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 248 PVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 306
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 307 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|374586349|ref|ZP_09659441.1| DNA polymerase IV [Leptonema illini DSM 21528]
gi|373875210|gb|EHQ07204.1| DNA polymerase IV [Leptonema illini DSM 21528]
Length = 372
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 153/287 (53%), Gaps = 15/287 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ +FV F Y SD R +F Y SLDEAYLD+T + + +
Sbjct: 82 AYRLCPDAVFVFPRFDVYKEVSDQIRAIFVSYTDLVEPLSLDEAYLDVTS-NKFQIPYAV 140
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
IA +++ + EE GLT SAGVA + LAK+ S +NKP+G +LP+ +A F+ +LP
Sbjct: 141 TIARQIKARIKEETGLTASAGVASGKFLAKIASGMNKPDGLTVILPDQAIA---FLEALP 197
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+ G+GKVTE +++ GI T ++ + S L ++F S + V G+
Sbjct: 198 VGDFFGVGKVTEKKMKE-HGIFTGADLKSRSLSELVSLFGKSGMHLYRLV-RGIDEAPVI 255
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R RKS+ E TFS D L ++L ++AE LS + + G GRT+T+K+K A FE
Sbjct: 256 PFRERKSVGIEDTFSADVSDVVELMQRLRQLAEGLSFRLARHGKPGRTITVKVKYADFET 315
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQF 285
+++ T +++ + + LL+ L PV RL+GL V F
Sbjct: 316 HSKSETRSSIPVAADALHQMGRSLLEQLLEEGRPV--RLLGLSVHGF 360
>gi|167619388|ref|ZP_02388019.1| DNA polymerase IV [Burkholderia thailandensis Bt4]
Length = 378
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 159/299 (53%), Gaps = 27/299 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R
Sbjct: 64 MSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCH 123
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F
Sbjct: 124 G-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAF 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLG 176
+++LP+RK+ G+GKVT L D GI TC E L+ SL H F + G
Sbjct: 180 VAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARG 235
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTL 231
+ + RKS+S E T+ +D A L + AEI +L A +++ G R L
Sbjct: 236 IDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKL 293
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+K++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 294 YVKVRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 346
>gi|422413513|ref|ZP_16490472.1| DNA polymerase IV [Listeria innocua FSL S4-378]
gi|313618089|gb|EFR90198.1| DNA polymerase IV [Listeria innocua FSL S4-378]
Length = 356
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 151/292 (51%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYREIGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYQLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMKFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYKGQDSIRLIGLTVTNL 343
>gi|255034132|ref|YP_003084753.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
gi|254946888|gb|ACT91588.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
Length = 372
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 171/315 (54%), Gaps = 21/315 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP++IFV F Y S R++F +Y SLDEAYLD+TE +
Sbjct: 66 MPSRQAIQLCPQIIFVHPRFEVYKSVSRSIREIFSRYTDLIEPLSLDEAYLDVTE--DKM 123
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
GI S +EIA++++ ++ EE LT SAGV+ N+ +AK+ SDI+KPNG F+ P+ +
Sbjct: 124 GIGSAMEIAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKPNGLTFIGPS---KIER 180
Query: 119 FISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ LP+ K G+GKVT ++ +F + +++ ++ L F T F+ + G
Sbjct: 181 FMDQLPVEKFHGVGKVTADKMKGMQLFTGSDLKKLTEEE--LVNHFG-KTGHFYYRIVRG 237
Query: 177 LGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 233
+ R KS+ +E TF+ T D+ + ++L I ++ ++ + L+GRT+TL
Sbjct: 238 IDDREVQTHRETKSLGAEDTFTYDLTTPDE--MNKELDRIGVTVANRLETKKLKGRTVTL 295
Query: 234 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP-VSLRLIGLRVTQFNEDKV- 290
K+K + F TR + + + I A LL K +L ++RL+G+ ++ F+E +V
Sbjct: 296 KVKFSDFTQITRNHSFAHPVGDLDTITDTAKQLLEKLDLEGKAVRLLGISLSNFHEPEVK 355
Query: 291 -RAPSDPTQKTLTNF 304
R DP Q L F
Sbjct: 356 YRKYKDPEQLELFPF 370
>gi|223044002|ref|ZP_03614042.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|417906353|ref|ZP_12550143.1| DNA polymerase IV [Staphylococcus capitis VCU116]
gi|222442545|gb|EEE48650.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|341598009|gb|EGS40527.1| DNA polymerase IV [Staphylococcus capitis VCU116]
Length = 356
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 149/296 (50%), Gaps = 11/296 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP +V + F Y S +F Y SLDEAYLDIT + R
Sbjct: 59 MPMSQAHKLCPNGYYVTSRFGAYREVSQQIMDIFRSYTEIVEPMSLDEAYLDITHLVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V +
Sbjct: 118 DMPASRIANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYQNVHEIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I + G+GK ++ ++ + GI T +++ K L +F + + G+ +
Sbjct: 176 MNLDIGEFPGVGKASKKVMHN-NGIYTGQDLYDKDEFELIRLFGKRGRGLY-NKARGIDN 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ +ERTFS V +D +L RK+ E++ + + K G+T+T+K+KT
Sbjct: 234 NEVKATRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERLNKLQKSGKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVR 291
+E ++ +L+ + S DI A L + + +RLIG+ V + R
Sbjct: 293 FKYETLSKQTSLRDSVQSENDIYNIAYTLYNDLKDPDIPIRLIGVTVGNLEQSSYR 348
>gi|161723133|ref|YP_442389.2| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 392
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 159/299 (53%), Gaps = 27/299 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R
Sbjct: 78 MSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCH 137
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F
Sbjct: 138 G-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAF 193
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLG 176
+++LP+RK+ G+GKVT L D GI TC E L+ SL H F + G
Sbjct: 194 VAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARG 249
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTL 231
+ + RKS+S E T+ +D A L + AEI +L A +++ G R L
Sbjct: 250 IDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKL 307
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+K++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 308 YVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 360
>gi|193222445|emb|CAL63465.2| DNA-directed DNA polymerase [Herminiimonas arsenicoxydans]
Length = 386
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 148/289 (51%), Gaps = 15/289 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KL P+ I +PTDFT Y +YS L + P +DE YLD+ + + +
Sbjct: 86 AAKLAPDAILLPTDFTAYRHYSRLFKAAAGAIAPQMEDRGIDEIYLDLNDQTDDIAV--- 142
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A+ ++ +V GL+CS GVAPN+LLAK+CSD+ KPNG +L + T I LP+
Sbjct: 143 -VAQRIKDAVVAATGLSCSIGVAPNKLLAKICSDLEKPNGLTIL--SEADIPTRIWPLPV 199
Query: 126 RKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI GIG K TE + GI T E++ ++L A F + + + V G+
Sbjct: 200 KKINGIGPKSTEKL--AALGILTIEQLANCDPAVLRANFGRIYSAWLMRVAQGIDEREIV 257
Query: 184 QARFRKSISS----ERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
KSIS ER D++ L + E ++ D+ ++ GRT+ +KL+ A
Sbjct: 258 TRSEPKSISRESTLERDLHAKLDRSELSALFTRLCERVADDLVRKEYLGRTVGIKLRYAD 317
Query: 240 FEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFNE 287
F TR +TL + ++ I + A L + L LRL+G+R+T ++
Sbjct: 318 FSTVTRDLTLPAPTNDAQAIRQAAGECLRRVPLDKRLRLLGVRITSLSK 366
>gi|269966224|ref|ZP_06180313.1| DNA polymerase IV [Vibrio alginolyticus 40B]
gi|269829139|gb|EEZ83384.1| DNA polymerase IV [Vibrio alginolyticus 40B]
Length = 373
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 151/301 (50%), Gaps = 32/301 (10%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+ RG S
Sbjct: 54 ALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYLDVTDSTACRG-SAT 112
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P ++ V I SLP+
Sbjct: 113 LIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEK--VQEVIDSLPL 170
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 184
I G+GKV+ L G CE++ L F A + G+ +
Sbjct: 171 ENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW-QRSHGIDNREVVV 228
Query: 185 ARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGLRGRTL 231
R RKS+ ERTFS V E+K LY +L + E S D + K+G
Sbjct: 229 ERERKSVGVERTFSQNIATYGECWQVIEEK--LYPELEKRLERASPDKSIIKQG------ 280
Query: 232 TLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKV 290
+K+K A F++ T + Q + + +L+ +LK + +RL+GL V ED+
Sbjct: 281 -IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIRLLGLNVMLKPEDQA 336
Query: 291 R 291
R
Sbjct: 337 R 337
>gi|134096511|ref|YP_001101586.1| DNA polymerase IV [Herminiimonas arsenicoxydans]
Length = 343
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 148/289 (51%), Gaps = 15/289 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KL P+ I +PTDFT Y +YS L + P +DE YLD+ + + +
Sbjct: 43 AAKLAPDAILLPTDFTAYRHYSRLFKAAAGAIAPQMEDRGIDEIYLDLNDQTDDIAV--- 99
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A+ ++ +V GL+CS GVAPN+LLAK+CSD+ KPNG +L + T I LP+
Sbjct: 100 -VAQRIKDAVVAATGLSCSIGVAPNKLLAKICSDLEKPNGLTIL--SEADIPTRIWPLPV 156
Query: 126 RKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI GIG K TE + GI T E++ ++L A F + + + V G+
Sbjct: 157 KKINGIGPKSTEKL--AALGILTIEQLANCDPAVLRANFGRIYSAWLMRVAQGIDEREIV 214
Query: 184 QARFRKSISS----ERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
KSIS ER D++ L + E ++ D+ ++ GRT+ +KL+ A
Sbjct: 215 TRSEPKSISRESTLERDLHAKLDRSELSALFTRLCERVADDLVRKEYLGRTVGIKLRYAD 274
Query: 240 FEVRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFNE 287
F TR +TL + ++ I + A L + L LRL+G+R+T ++
Sbjct: 275 FSTVTRDLTLPAPTNDAQAIRQAAGECLRRVPLDKRLRLLGVRITSLSK 323
>gi|91789542|ref|YP_550494.1| DNA-directed DNA polymerase [Polaromonas sp. JS666]
gi|91698767|gb|ABE45596.1| DNA-directed DNA polymerase [Polaromonas sp. JS666]
Length = 422
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 143/285 (50%), Gaps = 11/285 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF + YS L + + P +DE Y+D T+V + G
Sbjct: 103 AAKLCPQAIVLPVDFEEVRKYSRLFKSTITEIAPVMQDRGVDEVYIDFTDVPGGQREGGR 162
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ +++E+ GLTCS GVAPN+LLAK+ S+ +KPNG ++ + + I L +
Sbjct: 163 VLARLIQKAIFEKTGLTCSVGVAPNKLLAKMASEFDKPNGISIVYEEDL--QPRIWPLNV 220
Query: 126 RKIGGIG-KVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
RKI GIG K E + R I+T E+ Q S L A F +T + G
Sbjct: 221 RKINGIGPKAGEKLAR--LHIHTIGELAAQDPSFLIANFGKATGAWMHEAAWGRDDRPVV 278
Query: 184 QARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
S+S E TF DKA+L ++ L+ D+Q++G +T+ +KL+
Sbjct: 279 TESEPVSMSRETTFDRDLHAVRDKAVLGAIFTDLCSKLAQDLQRKGYVAKTIGIKLRYDD 338
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVT 283
F + TR T Y + + I K A + LK L LRL+G+R +
Sbjct: 339 FRIATRDQTADSYTADGQAIRKLAGLCLKRVPLEKKLRLLGVRAS 383
>gi|404370742|ref|ZP_10976062.1| hypothetical protein CSBG_01957 [Clostridium sp. 7_2_43FAA]
gi|226913130|gb|EEH98331.1| hypothetical protein CSBG_01957 [Clostridium sp. 7_2_43FAA]
Length = 348
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 152/293 (51%), Gaps = 10/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP F+A+KLCP I++ T +Y S+ + S+DEAYLDIT +
Sbjct: 57 MPIFMAQKLCPHGIYLRTRMFRYKEVSNQVFDILKDVTSIIQPISIDEAYLDITHSNFK- 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
SG+E A ++ V +E GLT S G++ N+ LAK+ SD NKPNG ++ + + +
Sbjct: 116 --SGMEAARYIKNRVLKEIGLTISVGISYNKFLAKLASDWNKPNGIKIITKE--MIPHIL 171
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQK-GSLLCAVFSHSTADFFLSVGLGLGS 179
P+ +I G+GK + L ++ GI T +++ + S + + + G+ +
Sbjct: 172 LPFPVSRIHGVGKKSVEKLNNI-GIFTVKDLYEMPKSFYIEYLGKYGLEIYDRIR-GIDN 229
Query: 180 TNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS ERT S T DK L L + + +S + + L G+T+T+K KT+
Sbjct: 230 REVEVERDRKSYGKERTLKSDTHDKEELMLYLKDFSNEISGYLIRGNLEGKTITVKYKTS 289
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKV 290
F+ TR+ TL Y ++ EDI + +L E+ +RLIG+ V+ F E+KV
Sbjct: 290 DFQNHTRSKTLNYYTNNFEDIYRTCEEILDNEEINEEVRLIGVTVSSFKENKV 342
>gi|386054230|ref|YP_005971788.1| DNA polymerase IV [Listeria monocytogenes Finland 1998]
gi|346646881|gb|AEO39506.1| DNA polymerase IV [Listeria monocytogenes Finland 1998]
Length = 356
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 151/292 (51%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+T+ ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTK--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEE--MLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T + M + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKMWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|389855914|ref|YP_006358157.1| DNA polymerase IV [Streptococcus suis ST1]
gi|353739632|gb|AER20639.1| DNA polymerase IV [Streptococcus suis ST1]
Length = 355
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 157/294 (53%), Gaps = 27/294 (9%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A + CP+ IF+ + KY R++F +Y S+DEAYLD+TE + G+S
Sbjct: 75 AYERCPQAIFISGHYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NKLGLSSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP + M V+ +SL
Sbjct: 133 VKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEEAMGVL---ASL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNT 182
PI K G+GK T L D+ G+ T +++L + L F D + G +N+
Sbjct: 190 PIEKFHGVGKKTVERLHDM-GVYTGQDLLDVPEMVLIDTFGRFGFDLYRK---ARGISNS 245
Query: 183 PQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRGRTLTLK 234
P R RKSI ERT+ + LLYR +L + + ++A +++ +GRT+ LK
Sbjct: 246 PVKVDRVRKSIGKERTY-----RKLLYREEDVLKELTSLCQRVAASLERNEKKGRTIVLK 300
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 286
++ F T+ +L +Y + I K L++ ++ +RL+G+ VT F
Sbjct: 301 VRYGDFSTLTKRHSLDEYTDQLDIIEKVVRQLIEEIGQVEKGIRLLGVTVTNFQ 354
>gi|34105668|gb|AAQ62022.1| DNA-damage-inducible protein P [Chromobacterium violaceum ATCC
12472]
Length = 496
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 12/240 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCPEL+ VP D +Y S ++ +Y SLDEAYLD+T ERG S
Sbjct: 183 ALRLCPELLIVPPDMARYRLASQQIMAIYQRYTEVIEPLSLDEAYLDVTGQPHERG-SAT 241
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 124
+AE +R + +E G+T SAG+APN+ LAKV SD NKP+GQ+++ P D + F++ LP
Sbjct: 242 LMAEAIRRQIRDEVGITASAGIAPNKFLAKVASDWNKPDGQYLIRPRD---IDAFVAVLP 298
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNT 182
+ KI G+G+VT L + GI +C ++ + +F H S + L++ G
Sbjct: 299 VEKIHGVGRVTAERLHRL-GIRSCGDLRRWSP--ADLFRHFGSFGERLLALAHGRDERPV 355
Query: 183 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRG-RTLTLKLKTASF 240
R RK+IS E T++ D A KL E+ + L A + + G + L++KLK F
Sbjct: 356 STDRSRKTISVEETYAQDLPDLASCLSKLPELVDRLQARLARSGSPAFKGLSVKLKFDDF 415
>gi|257897187|ref|ZP_05676840.1| DNA damage inducible protein P, partial [Enterococcus faecium
Com12]
gi|257833752|gb|EEV60173.1| DNA damage inducible protein P [Enterococcus faecium Com12]
Length = 371
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 154/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD+TE C+
Sbjct: 79 AYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLDVTENKINCK---- 134
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 135 SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 191
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGST 180
+LPI K G+GK T + ++ GI T +++ + + L F + V G+ +
Sbjct: 192 TLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTLIRNFGKMGYSLYRKVR-GIHDS 249
Query: 181 NTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK++
Sbjct: 250 PVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQKHGKTVVLKVRYT 308
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
+ T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 309 DYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 358
>gi|317485314|ref|ZP_07944194.1| impB/mucB/samB family protein [Bilophila wadsworthia 3_1_6]
gi|316923440|gb|EFV44646.1| impB/mucB/samB family protein [Bilophila wadsworthia 3_1_6]
Length = 398
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 145/290 (50%), Gaps = 9/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP I VP +Y S V Y P AS+DEAYLD T + ER
Sbjct: 57 MPIAQALQLCPHAILVPVRMARYAEVSRTVIDVLRSYSPRVEKASVDEAYLDATGL--ER 114
Query: 61 GISGIE-IAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 118
+E +A ++ V E GLTCS G+AP + LAK+ SD+NKP+G +L D++A
Sbjct: 115 LFGPVEDMARRIKLEVKEVTGGLTCSIGLAPVKFLAKIASDLNKPDGLSILYPDKLA--A 172
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 178
F+ SLP+ +I G+GK L+ + I T ++ + + G+
Sbjct: 173 FLQSLPVEQIPGVGKTMVRELQSL-AIRTAGDVPRYPKVFWERRFGKAGITLYERAQGID 231
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
KS S+E TF + T D L L A+ + ++K+ L+GR +TLK+K
Sbjct: 232 PREVEPYTPPKSESAETTFDIDTRDIGFLKSWLFRHADRIGRTLRKQKLQGRVITLKIKY 291
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN 286
A F + TR VTL S++E I + A LL L +RLIG+ V+ F+
Sbjct: 292 ADFRLMTRRVTLDAPTSATETIYETACDLLDHMRLEEKIRLIGVGVSGFD 341
>gi|425054472|ref|ZP_18457978.1| putative DNA polymerase IV [Enterococcus faecium 505]
gi|403035786|gb|EJY47169.1| putative DNA polymerase IV [Enterococcus faecium 505]
Length = 373
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 151/294 (51%), Gaps = 27/294 (9%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV---CRERGI 62
A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD+TE C+
Sbjct: 77 AYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLDVTENKINCK---- 132
Query: 63 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 121
S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V P D + F+
Sbjct: 133 SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQD---AVPFLK 189
Query: 122 SLPIRKIGGIGKVT---EHILRDVFG--INTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
+LPI K G+GK T H L G + C EM+ L F + V G
Sbjct: 190 ALPIEKFHGVGKKTVPRMHELGIYIGKDLYECTEMM-----LIRNFGKMGYSLYRKVR-G 243
Query: 177 LGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + R RKS+ E T+ + ++A+L +L ++AE + +++ G+T+ LK
Sbjct: 244 IHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQKHGKTVVLK 302
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T +
Sbjct: 303 VRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLTNLD 356
>gi|365853728|ref|ZP_09393993.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
gi|363711886|gb|EHL95592.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
Length = 366
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 151/287 (52%), Gaps = 14/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A +LCP+ +F + F Y S +F +Y + +LDEAYLDIT+ +R IS
Sbjct: 69 ALELCPKAVFRFSGFELYRAVSQKIHDIFHEYTDKVESVALDEAYLDITD--NKRHISDS 126
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 123
I++ ++ + ++ LTCS GV+ N+ LAK SD KP G V+ P D + F+ L
Sbjct: 127 IQVGRMIQAEILKQTKLTCSVGVSYNKFLAKEASDYAKPFGLTVIEPKD---AIEFLKRL 183
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
PI K G+GK T + D+ GIN +++Q + G+
Sbjct: 184 PIEKFRGVGKKTVPKMHDL-GINDGADLIQWSQMDLIKHFGKFGYVLYERARGIDKRPVE 242
Query: 184 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
AR RKS+ ERTF E+++ + +L IAEM++A+MQ++ G+TL LK++ F
Sbjct: 243 YARVRKSVGKERTFGPELENQSQVDDQLKHIAEMVAAEMQQKKKHGKTLVLKIRYRDFST 302
Query: 243 RTRAVTLQKYISSS-EDILKHASVLLKAELP---VSLRLIGLRVTQF 285
T+ ++L YI ++ D + AS LL AE+P +RL+G+ +T
Sbjct: 303 FTKRISLDNYIHNNPSDYYELASELL-AEMPDIVGGVRLLGITLTNL 348
>gi|290476280|ref|YP_003469184.1| DNA polymerase IV [Xenorhabdus bovienii SS-2004]
gi|289175617|emb|CBJ82420.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Xenorhabdus bovienii SS-2004]
Length = 370
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 137/253 (54%), Gaps = 17/253 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A KLCP+L +P Y S R++F +Y SLDEAYLD+T+ C+
Sbjct: 76 MSTAMALKLCPQLKVIPGRMASYKEVSQHIRQIFSRYTELIEPLSLDEAYLDVTD-CQHC 134
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+++R +++E LT SAGVAP R LAK+ SDINKPNGQ+V+ +++ V F+
Sbjct: 135 HGSATLIAQQIRQVIFDELQLTASAGVAPIRFLAKIASDINKPNGQYVISPEQVEV--FV 192
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLG 178
SLP+RKI G+GKVT L D+ G+ TC ++ K +L+ + A + S G+
Sbjct: 193 KSLPLRKIPGVGKVTSKRLSDM-GLETCADVQNYDKVALIKKLGKFGLALWERS--HGID 249
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE------GLRGRTLT 232
R RKS+ E+T + + +R E+ E L +++K LR
Sbjct: 250 DRQISPDRLRKSVGVEKTLAQDIHE---WRDCVELIEKLYPELEKRLGKVKPDLRIARQG 306
Query: 233 LKLKTASFEVRTR 245
+KLK F++ T+
Sbjct: 307 IKLKFDDFQLTTQ 319
>gi|83655177|gb|ABC39240.1| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 496
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 159/299 (53%), Gaps = 27/299 (9%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R
Sbjct: 182 MSSALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCH 241
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G SG IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F
Sbjct: 242 G-SGTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAF 297
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLG 176
+++LP+RK+ G+GKVT L D GI TC E L+ SL H F + G
Sbjct: 298 VAALPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARG 353
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTL 231
+ + RKS+S E T+ +D A L + AEI +L A +++ G R L
Sbjct: 354 IDERPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKL 411
Query: 232 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+K++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 412 YVKIRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 464
>gi|262376946|ref|ZP_06070172.1| DNA polymerase IV(Pol IV) [Acinetobacter lwoffii SH145]
gi|262307984|gb|EEY89121.1| DNA polymerase IV(Pol IV) [Acinetobacter lwoffii SH145]
Length = 351
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 154/290 (53%), Gaps = 19/290 (6%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
ARKLCP++I + DF KY S ++F +Y SLDEA+LD+TE ++ S
Sbjct: 61 ARKLCPQVIVIEPDFAKYRQVSAQIHQIFQQYTSLIEPLSLDEAFLDVTENLQQIP-SAT 119
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A +R +++ GLT SAGVAPN+ LAK+ SD +KPNG V+ + V FI LP+
Sbjct: 120 EVAMRIREDIFQATGLTASAGVAPNKFLAKIASDWHKPNGICVIKPSQ--VQRFIQDLPL 177
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
+KI G+GKVT+ L+ + + T ++ Q +LL F FL G+
Sbjct: 178 KKIPGVGKVTQEKLKSL-NLETLGDLQQIDEALLIQHFGKYGRRLFL-YAQGIDERPVEV 235
Query: 185 ARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
R R+ IS E TF + + + L ++ + +QK+ L R +T+KLK +F
Sbjct: 236 ERERQQISKETTFDDDLHLNQCRPYWEPLLGQVWQ----SLQKKQLSARGVTVKLKLKNF 291
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS----LRLIGLRVTQFN 286
+V + + ++ + S ++ L A LL +L ++ RLIG+ V Q +
Sbjct: 292 QVMQHSKSFKQVLRSPQE-LAQALDLLLDDLHIAPQMQFRLIGVGVYQLS 340
>gi|255026659|ref|ZP_05298645.1| DNA polymerase IV [Listeria monocytogenes FSL J2-003]
Length = 356
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 151/292 (51%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|148556499|ref|YP_001264081.1| DNA-directed DNA polymerase [Sphingomonas wittichii RW1]
gi|148501689|gb|ABQ69943.1| DNA-directed DNA polymerase [Sphingomonas wittichii RW1]
Length = 380
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 152/295 (51%), Gaps = 17/295 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +AR+LCP+L+FV F Y S +F Y SLDEAYLD+T +
Sbjct: 78 MASALARRLCPDLLFVRPRFEVYREVSRQIHLIFADYTDLVEPLSLDEAYLDVTN--NHQ 135
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI+ E+A ++R + EE GLT SAGV+ N+ +AK+ SD NKP+G V+ D+ + F
Sbjct: 136 GIATATEVARQIRARIREETGLTASAGVSYNKFIAKLASDHNKPDGLCVVRPDQG--LAF 193
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLG 178
I+ P+ + G+G VT + + GI+T ++ + L F S D+F +
Sbjct: 194 IAMQPVGRFHGVGPVTATRM-EKLGIHTGADLRRCSREFLGQQFGKS-GDYFYLAARAID 251
Query: 179 STNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
R RKSI SE TF ED L L E +E ++ ++ G GRT+++K
Sbjct: 252 HRAVRPDRVRKSIGSENTFFHDLYSHED---LAAALLESSESVARHAERTGKAGRTISIK 308
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNE 287
L+ + F TRA TL ++ + I + A LL PV+L RL+G+ ++ E
Sbjct: 309 LRYSDFRTLTRARTLPAPVADAARIQEVALALLAPLEPVALGVRLLGVTLSSLGE 363
>gi|417840269|ref|ZP_12486413.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
gi|341949079|gb|EGT75689.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
Length = 355
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 148/299 (49%), Gaps = 20/299 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A K CP LI VP + Y S ++F +Y SLDEAYLD+T C++
Sbjct: 60 MPTAQAIKKCPNLILVPVNMALYKQVSAQIHQIFHRYTDIIEPLSLDEAYLDVTH-CQKC 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V F
Sbjct: 119 SGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VSEF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I +L + KI G+GKVT L D+ G+ TC ++ ++ G+
Sbjct: 176 IKTLSLNKIPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDD 234
Query: 180 TNTPQARFRKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTL 231
R RKS+ E+T ++ + L LY +L E +S ++ R +
Sbjct: 235 REVQAHRERKSVGVEQTLIENIHTIEQASELLNNLYDELIRRLERVSCNIPLSAF--RKI 292
Query: 232 TLKLKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 289
+KLK F+V T T L + S + + + K S+RLIGL V E+K
Sbjct: 293 GVKLKFEDFQVTTLEKTGLPLSLESFQQLFPQIFMRAKGR---SIRLIGLHVNLPEENK 348
>gi|103486248|ref|YP_615809.1| DNA polymerase IV [Sphingopyxis alaskensis RB2256]
gi|98976325|gb|ABF52476.1| DNA-directed DNA polymerase [Sphingopyxis alaskensis RB2256]
Length = 376
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 155/310 (50%), Gaps = 11/310 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CP LIFVP F Y S R +F Y SLDEAYLD++
Sbjct: 73 MPSITAKRQCPGLIFVPPRFEVYREVSHQIRAIFRDYADEVEPLSLDEAYLDVSADKAGL 132
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S A +R + EE GLT SAGV+ N+ +AK+ SD NKP+G V+P + A F+
Sbjct: 133 G-SATATARLIRRRIREETGLTASAGVSYNKFIAKLASDQNKPDGLTVIPPGKGA--AFV 189
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+L IR+ GIG VT + + G+ + ++ K L A ++A++ ++ G+
Sbjct: 190 QTLSIRRFHGIGPVTAAKMEGL-GVFSGADLAAKDPLWLAEHFANSAEWLYNLARGIDHR 248
Query: 181 NTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R KS+ ERTF +T+ + + LA + ++ K+G RGRT+TLKL+
Sbjct: 249 RVKSNRPLKSLGGERTFFNDLITDTE--IREALAHVCTVVWDRAVKKGARGRTVTLKLRY 306
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSD 295
A F TRA ++ I +L +L LP +RL+G+ +++F ++
Sbjct: 307 ADFRTITRAKSVPSPIRDGASLLAVGEAILAPLLPSEQGIRLLGVTLSKFEGEEEEGDEA 366
Query: 296 PTQKTLTNFM 305
P L + +
Sbjct: 367 PAPADLLSLI 376
>gi|319792107|ref|YP_004153747.1| DNA-directed DNA polymerase [Variovorax paradoxus EPS]
gi|315594570|gb|ADU35636.1| DNA-directed DNA polymerase [Variovorax paradoxus EPS]
Length = 414
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 9/283 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ + +P DF +Y +S ++V + P +DE Y+D T+V + G
Sbjct: 102 AAKLCPQALILPVDFDEYRRFSRAFKQVILEIAPLMEDRGVDEVYIDFTDVPGGQRDGGR 161
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ S+ + GLTCS GVAPN+L+AK+ S+ NKPNG V+ + + I LP
Sbjct: 162 SLARLIQKSILDATGLTCSVGVAPNKLIAKMASEFNKPNGISVVYEGDLE--SHIWPLPC 219
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
RK+ GIG + L+ FGI T ++ + L F +T + V G
Sbjct: 220 RKVNGIGPKADEKLKR-FGIETVGQLAARDRDWLIQNFGKATGAWMHEVSWGRDDRPVVT 278
Query: 185 ARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
S+S E TF D+A L + E ++ D+Q++G G+T+ +KL+ F
Sbjct: 279 ESEPVSMSRETTFDRDLHAVRDRAELGAIFTHLCEKVAEDLQRKGYVGKTIGIKLRYDDF 338
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 282
++ TR T+ ++ + + I + + LK L LRL+G+RV
Sbjct: 339 KIATRDQTIDRFTADGKTIRQVGGLCLKRVPLERPLRLLGVRV 381
>gi|121608615|ref|YP_996422.1| DNA-directed DNA polymerase [Verminephrobacter eiseniae EF01-2]
gi|121553255|gb|ABM57404.1| DNA-directed DNA polymerase [Verminephrobacter eiseniae EF01-2]
Length = 432
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 135/282 (47%), Gaps = 9/282 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF + YS L + V + P +DE Y+D T+V + G
Sbjct: 115 AAKLCPQAIVLPVDFDEVRKYSRLFKSVITEIAPVMQDRGVDEVYIDFTDVPGGQREGGR 174
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ S+ + GLTCS GVAPNRLLAK+ S+ NKPNG ++ + T I L +
Sbjct: 175 VLARLIQKSIADATGLTCSIGVAPNRLLAKMASEFNKPNGITIIYEQDL--QTKIWPLDV 232
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
RKI GIG L G+ E+ Q L A F S + G +
Sbjct: 233 RKINGIGPKAGQKL-AALGVQRIGELAAQDPQWLMARFGKSIGAWMHRAAWGQDDSPVVT 291
Query: 185 ARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
S+S E TF DKA L R ++ L+ D+Q++G RT+ +KL+ A F
Sbjct: 292 ESEPVSMSRETTFERDLHAVHDKAELGRIFTDLCMRLAEDLQRKGYVARTIGIKLRYADF 351
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLR 281
+ TR T Y + I + A LK L LRL+G+R
Sbjct: 352 RIATRDQTAASYTADGATIRQLAGQCLKRVPLQQRLRLLGVR 393
>gi|357634774|ref|ZP_09132652.1| DNA-directed DNA polymerase [Desulfovibrio sp. FW1012B]
gi|357583328|gb|EHJ48661.1| DNA-directed DNA polymerase [Desulfovibrio sp. FW1012B]
Length = 398
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 144/290 (49%), Gaps = 6/290 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR+ CP +F+ + +Y+ S + P AS+DEAY+D+T
Sbjct: 55 MPVAEARRRCPHGVFLSGNRRRYSEVSRIVMATLENVSPLVEPASIDEAYVDVTGTETLF 114
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G + ++ V E GL CS G+AP + +AK+ SD +KP+G V+ + V F+
Sbjct: 115 GPPE-ALGRRVKQMVREATGLPCSVGIAPVKFIAKIASDYDKPDGLTVVSEADVPV--FL 171
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+ LP+ KI G+G+ E L GI ++L + G GST
Sbjct: 172 ADLPVGKIPGVGRRAEASL-SRLGIRRVGDILAYPPEFLERHCGKWGLDLYAKAHGRGST 230
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
AR KS+S+E TF T D+ L L +E + +++++GL GRT+TLKLK
Sbjct: 231 TVAVAREAKSVSAENTFDTDTADRERLASWLLHQSERIGRELRQDGLAGRTITLKLKFND 290
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 288
F TR+ TL + I S I A+ LL AE LP +RLIG+ V+ F +
Sbjct: 291 FRQITRSRTLPEPIDSDGAIFAAATALLDAEPLPRPVRLIGVGVSNFGRE 340
>gi|89901130|ref|YP_523601.1| DNA-directed DNA polymerase [Rhodoferax ferrireducens T118]
gi|89345867|gb|ABD70070.1| DNA-directed DNA polymerase [Rhodoferax ferrireducens T118]
Length = 413
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 147/307 (47%), Gaps = 15/307 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A KLCP+ I +P DF +Y YS + + P +DE Y+D T+V + G
Sbjct: 96 AAKLCPQAILLPVDFAEYRKYSRAFKTIVTDIAPLMEDRGVDEVYIDFTDVPGGQREGGR 155
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
+A ++ +++E+ GLTCS GVAPN+LLAK+ S+ NKP G V+ + + + I L
Sbjct: 156 VLARLIQKTIFEQTGLTCSIGVAPNKLLAKMASEFNKPKGIAVVFEEDL--QSKIWPLAC 213
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
RKI GIG T+ L+ + GI T E+ QK L F T + G
Sbjct: 214 RKINGIGPKTDVKLQGM-GIQTIGELAQKTVDWLIDHFGQKTGAWLFDAAHGRDQRPVVL 272
Query: 185 ARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
SIS E TF DKA L + + +++D+ +G G+T+ +KL+ F
Sbjct: 273 ESEPVSISRETTFERDLHAVRDKAALGAIFTRLCQQVASDLAAKGYVGKTIGIKLRYEDF 332
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVT------QFNEDKVRAP 293
+ TR TL Y + I + A + LK L LRL+G+RV Q E P
Sbjct: 333 KSVTRDQTLDDYTADFAVIRQTAGLCLKRVPLAQRLRLLGVRVATLVKAEQVQEFITNQP 392
Query: 294 SDPTQKT 300
P ++T
Sbjct: 393 LAPVKQT 399
>gi|294648910|ref|ZP_06726364.1| DNA polymerase IV [Acinetobacter haemolyticus ATCC 19194]
gi|292825199|gb|EFF83948.1| DNA polymerase IV [Acinetobacter haemolyticus ATCC 19194]
Length = 355
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 146/287 (50%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A+KLCP++I + +F KY S ++F +Y P SLDEAYLD+TE + S
Sbjct: 65 AKKLCPQVIVIEPNFEKYRKVSAQIHQIFQQYTPIIEPLSLDEAYLDVTENLKNIP-SAT 123
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPNG FV+ + + FI L +
Sbjct: 124 EVATQIRADIFAATGLTASAGVAPNKFLAKIASDWNKPNGLFVIKPHQ--IQHFIQDLAL 181
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
+KI G+GKVT L + ++T + LQK ++L F +L G+
Sbjct: 182 KKIPGVGKVTYEKLNQL-NLHTLGD-LQKIEENVLIHHFGKYGKQLYL-YAQGIDHRPVK 238
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF A + E + ++++ L R + +KLK +F+
Sbjct: 239 AERERQQISKEITFDDDYTLAECNHAWQPLTEQVWRSLERKQLTARGVNVKLKLKNFQTL 298
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQFN 286
+ + + + S +D L+ + L E+ + RL+G+ V Q
Sbjct: 299 QHSKSFKLPLRSQQD-LEQVVLQLLNEMHIDPDFQFRLVGVGVYQLQ 344
>gi|262373904|ref|ZP_06067181.1| nucleotidyltransferase/DNA polymerase [Acinetobacter junii SH205]
gi|262310915|gb|EEY92002.1| nucleotidyltransferase/DNA polymerase [Acinetobacter junii SH205]
Length = 355
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A+KLCP+++ + F KY S ++F +Y P SLDEAYLD+TE + S
Sbjct: 65 AKKLCPQVVVIEPHFEKYREVSAQIHQIFQQYTPLIEPLSLDEAYLDVTENLKNIP-SAT 123
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPNG FV+ + + FI L +
Sbjct: 124 EVATQIRADIFAVTGLTASAGVAPNKFLAKIASDWNKPNGLFVIKPHQ--IQHFIQDLAL 181
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT L + ++T + LQK ++L F +L G+
Sbjct: 182 NKIPGVGKVTHEKLNQL-NLHTLGD-LQKIEENVLIHHFGKYGKQLYL-YAQGIDHRPVK 238
Query: 184 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 243
R R+ IS E TF +AE + +Q++ L R + +KLK +F+
Sbjct: 239 AERERQQISKEITFDDDYTLNQCAHAWQPLAEQVWCSLQRKQLTARGVNVKLKLKNFQTL 298
Query: 244 TRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQFN 286
+ + + + S +D L+ + L E+ + RL+G+ V Q
Sbjct: 299 QHSKSFKLPLRSQQD-LEQVVLQLIEEMHIDQSFQFRLVGVGVYQLQ 344
>gi|315303932|ref|ZP_07874389.1| DNA polymerase IV [Listeria ivanovii FSL F6-596]
gi|313627694|gb|EFR96370.1| DNA polymerase IV [Listeria ivanovii FSL F6-596]
Length = 356
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 150/290 (51%), Gaps = 11/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + + Y S R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTKQAVKLCPHGIFIHGNMSHYVEVSGQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ S IA +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+ D F
Sbjct: 118 GMKSATLIARDIQQTIYRELGLTASAGVSFNKFIAKIASDFQKPAGITVVSPDEAE--AF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ +P+ K G+GKVT L + GI T + L+K S + + L + S
Sbjct: 176 LEKIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKQGYHLYRHVRGRS 233
Query: 180 TNTPQA-RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
N R RKS+ E TF D+ +L + L A+ + + K G+T+ LKL+
Sbjct: 234 NNVVNPHRDRKSVGKETTFEFNILDERILEQNLMIFAKKVEERLTKLQKHGKTVVLKLRY 293
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQF 285
+ F T+ +TL +YI ++ I + A++LL S+RLIGL VT
Sbjct: 294 SDFTTVTKRLTLNEYIHDAKQIYQAAALLLSETYTGKESIRLIGLTVTNL 343
>gi|385839310|ref|YP_005876940.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris A76]
gi|358750538|gb|AEU41517.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris A76]
Length = 346
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 157/295 (53%), Gaps = 22/295 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYLD+TE + S I
Sbjct: 57 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYLDVTE-NKIGAQSAI 115
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ L K+ SD KP+G ++P++ + F++ L
Sbjct: 116 KIAKLIQRDIFVELGLTCSAGVSYNKFLEKIASDYEKPHGLTLIMPDE---ALEFLAKLL 172
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L G T ++ + + L F + F G+ ++
Sbjct: 173 VEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAEKFGIYGWELFQKAN-GIHNSKVK 230
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ ERT+ LLY +L +I++ +S +++ L+G + LKL+
Sbjct: 231 NHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKRHQLKGNIIILKLRY 285
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDK 289
+ F T+ ++ + + S EDI + A + + + + +RL+G+ V+ F K
Sbjct: 286 SDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDESLGVRLLGVTVSGFGVQK 340
>gi|423081977|ref|ZP_17070572.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|423085581|ref|ZP_17074023.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
gi|357549227|gb|EHJ31074.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|357549498|gb|EHJ31344.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
Length = 366
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 155/300 (51%), Gaps = 22/300 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++
Sbjct: 61 MPSAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVTK--NKK 118
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F
Sbjct: 119 SIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEEN--AQDF 176
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVG 174
+ LP+ K G+GKVT + L+++ GI T C + + L +F + +
Sbjct: 177 LDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFA 230
Query: 175 LGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G+ R RKS+ +E T S + D+ L E+ E + ++ G+TLT
Sbjct: 231 RGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKSSEKFGKTLT 290
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 289
LK+K F TR+++L+ YI DI LL+ + V+ +RL+G+ ++ ++ K
Sbjct: 291 LKIKYEDFTKITRSISLEHYIDEYNDIRSGVDNLLR-NVEVNGKQIRLLGVTISNLSDKK 349
>gi|39996716|ref|NP_952667.1| DNA polymerase IV [Geobacter sulfurreducens PCA]
gi|409912137|ref|YP_006890602.1| DNA polymerase IV [Geobacter sulfurreducens KN400]
gi|39983597|gb|AAR34990.1| DNA polymerase IV [Geobacter sulfurreducens PCA]
gi|298505728|gb|ADI84451.1| DNA polymerase IV [Geobacter sulfurreducens KN400]
Length = 409
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 160/305 (52%), Gaps = 11/305 (3%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCPELI V + +YT S L ++ ++ P S+DEA+LD+T R G + +
Sbjct: 64 AKRLCPELILVIGNNREYTRISKLIFEMLGQFTPLVEVFSIDEAFLDLTGSLRLFGRADV 123
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
IA E++ + + GLTCS G+APN+LLAK+ SD+ KP+G ++P + +A + + + PI
Sbjct: 124 -IAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPDGLTIIPPENVA--SLMKTTPI 180
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
R + GIG TE L+ GI+TC ++ S + + +G G+ +
Sbjct: 181 RSLCGIGPSTEQRLK-YLGISTCNDLGHFSSKILTRHFGAMGARLKQMGQGIDDSPVIPT 239
Query: 186 RFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + S + S T D L +++ L ++EM+ ++ +G+T+TL ++ A F
Sbjct: 240 TTEEEVKSV-SHSTTLDHDLTNKDDIHKYLLMLSEMVGRRARRYKTKGKTVTLTIRYADF 298
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKVRAPSDPTQK 299
+R TL ++ S DI + + LL +L +RL+G+ ++ + P P ++
Sbjct: 299 TTFSRQETLPSPLNRSGDIYRAVTALLDTLQLTQPIRLLGVAISNLVHASEQLPLFPEER 358
Query: 300 TLTNF 304
LT
Sbjct: 359 RLTTL 363
>gi|257867910|ref|ZP_05647563.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC30]
gi|257874239|ref|ZP_05653892.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC10]
gi|257801993|gb|EEV30896.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC30]
gi|257808403|gb|EEV37225.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC10]
Length = 374
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 154/287 (53%), Gaps = 13/287 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A +LCP+ IF P + KY S R++F +Y S+DEAYLD+T V + S I
Sbjct: 77 AYELCPQAIFKPGNHQKYREVSQQVREIFHRYTDIIEPVSIDEAYLDVT-VNKINCPSAI 135
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA ++ +++E LTCSAGV+ N+ LAK+ SD +KP G V+P++ +A F+ LP
Sbjct: 136 KIARLIQRDIWQETHLTCSAGVSYNKFLAKLSSDYHKPRGLTVVMPDEAVA---FLQQLP 192
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
I K GIGK T + ++ GI T ++ + L F + V G+ +
Sbjct: 193 IDKFHGIGKKTVPRMHEL-GIFTGADLYGWSEMALIREFGKMGYSLYRKVR-GIHDSPVS 250
Query: 184 QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R RKS+ E T+ +T ++ +L +L IAE + +++ G+T+ LK++ + +
Sbjct: 251 VTRERKSVGKEHTYGNPLTSEEQVL-SQLRAIAEEVERSLKRTQKHGKTVVLKVRYSDYS 309
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
T+ VTL Y+ E + AS++ + L + +RL+G+ VT +
Sbjct: 310 TITKRVTLPTYVHKKEQLFSEASLIWEEILGLEKGIRLLGITVTNLD 356
>gi|330469309|ref|YP_004407052.1| DNA-directed DNA polymerase [Verrucosispora maris AB-18-032]
gi|328812280|gb|AEB46452.1| DNA-directed DNA polymerase [Verrucosispora maris AB-18-032]
Length = 419
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 150/306 (49%), Gaps = 15/306 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP AR LCP IF+P DFT+YT S ++F P SLDEA+LD+ R
Sbjct: 78 MPTMRARALCPHAIFLPPDFTRYTAASRAVMQIFRDVTPLVEPLSLDEAFLDVAGARRLF 137
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S I +R V E GLTCS GV P++ +AK+ S KP+G V+P + V+ F+
Sbjct: 138 G-SPATIGRRIRERVAAEQGLTCSVGVGPSKFVAKLGSTRAKPDGLLVVPAAQ--VLDFL 194
Query: 121 SSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
LP+ + G+G + E +LR G+ T ++ Q +L + A + G
Sbjct: 195 HPLPVSALWGVGERSAEALLR--LGLRTVGDLAQAPIGMLRTALGQAAAAHLHELAWGRD 252
Query: 179 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ KSI +E TF V +D L R +AE + A ++ GRT+++K++
Sbjct: 253 PRRVSPEQVEKSIGAEVTFDVDVDDPEHLRRTFLALAEKVGARLRDAEQVGRTVSIKVRM 312
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKVRAPSD 295
+ F +R+ TL+ + +I A L A LP +RL+G+R + RA +
Sbjct: 313 SDFRTISRSRTLEVPTDVAREIFDIAWSLFAA-LPSGEQIRLVGVRAEGLH----RADAT 367
Query: 296 PTQKTL 301
P Q TL
Sbjct: 368 PRQLTL 373
>gi|422019443|ref|ZP_16365991.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
gi|414103282|gb|EKT64860.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
Length = 351
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 112/199 (56%), Gaps = 6/199 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A KLCP L VP Y S+ R++F +Y SLDEAYLD+T+ C++
Sbjct: 57 MSTALALKLCPHLKVVPGRMAVYKDVSNHIRQIFARYTDLIEPLSLDEAYLDVTD-CQQL 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAE +R +++E LT SAG+AP + LAK+ SD+NKPNGQFV+ + TF+
Sbjct: 116 HGSATLIAEAIRQQIFDELQLTASAGIAPIKFLAKIASDMNKPNGQFVITPQELP--TFV 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADFFLSVGLGLGS 179
+SLP++KI G+GKVT L D+ G+ TC + +QK +L + S G+
Sbjct: 174 ASLPLKKIPGVGKVTAQKLADM-GLLTCSD-VQKYDMLALIKSMGKFGQALWERCHGIDE 231
Query: 180 TNTPQARFRKSISSERTFS 198
R RKS+ ERT +
Sbjct: 232 RAVNPERLRKSVGVERTLA 250
>gi|257434028|ref|ZP_05610379.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257280954|gb|EEV11098.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
Length = 356
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 152/292 (52%), Gaps = 11/292 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ R RKS+ +E TF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSTRVRKSVGTEHTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 287
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|308447175|ref|XP_003087353.1| hypothetical protein CRE_25044 [Caenorhabditis remanei]
gi|308257152|gb|EFP01105.1| hypothetical protein CRE_25044 [Caenorhabditis remanei]
Length = 636
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 159/302 (52%), Gaps = 14/302 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCP+LI +P +KY S +VF ++ P S+DEA+LD+ +
Sbjct: 70 MPVGRAKQLCPQLILIPPVHSKYRDASRAVMRVFEEFTPLVEPLSIDEAFLDVAGSLKLF 129
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G EIA +LR V E+ GL S G+A + +AK+ S KP+G +P R + F+
Sbjct: 130 G-EPTEIARQLRARVREQTGLPASVGLAGTKFIAKLASQRAKPDGILEIPPAR--TLEFL 186
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 179
LP+ + G+GK T L+ I T E+ ++ L + ++A ++ G +
Sbjct: 187 HPLPVEAMWGVGKATARSLQS-RAIRTIGELAREPLPSLERLVGRASALKLHALANGRDA 245
Query: 180 TNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI E TF++ E D+A+L+R+L ++ + +++ G RT+ +K++
Sbjct: 246 RAVETERIEKSIGHEETFAIDETDRAVLHRELLRLSTRTAERLREHGAEARTIAIKVRWD 305
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL---RLIGLRVTQFNEDKVRAPSD 295
+FE TR+ TL + ++++ I + AS LL+ L VSL RLIG+ E + A SD
Sbjct: 306 TFETVTRSRTLSEATNATQRIYRTASNLLEG-LGVSLMAVRLIGV----LAEQLIAAGSD 360
Query: 296 PT 297
P
Sbjct: 361 PA 362
>gi|337755270|ref|YP_004647781.1| DNA polymerase IV [Francisella sp. TX077308]
gi|336446875|gb|AEI36181.1| DNA polymerase IV [Francisella sp. TX077308]
Length = 349
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 118/198 (59%), Gaps = 6/198 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP+LI + TDF KY S + R++F + SLDEAYLD+T+V +
Sbjct: 60 MPTAIALQKCPDLILLNTDFAKYKADSAIIREIFYSFTTKVEPLSLDEAYLDVTDVTVYK 119
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V F+
Sbjct: 120 N-SATLIALAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VNDFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
+LP++K+ G+GKV++ L+ + + TC ++ Q + + L F + + + G+ +
Sbjct: 177 KNLPVKKLFGVGKVSQEKLKSM-NVETCSDLQQLRLATLVDKFGKFGSSLY-NYARGIDN 234
Query: 180 TNTPQARFRKSISSERTF 197
R RKS+S E T+
Sbjct: 235 REVNPVRIRKSVSVENTY 252
>gi|339479861|gb|ABE96329.1| DNA polymerase IV [Bifidobacterium breve UCC2003]
Length = 424
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 154/308 (50%), Gaps = 20/308 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSD-LTRKVFCKYDPNFMAASLDEAYLDITEVCRE 59
MP A +LCP+ +F+P D Y S + +VF F S+DE Y+D++ E
Sbjct: 74 MPAARAHQLCPDGVFLPVDMAYYRMMSHRIMHEVFLTITDQFEQVSVDEGYMDVSGALLE 133
Query: 60 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
I +R V E +TCS G+A N+L+AK+ S KPNG ++P R A F
Sbjct: 134 WDKPS-AIGAWIRQQVAERFNVTCSVGIACNKLVAKMASTNAKPNGMLLIPAARSA--QF 190
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ--KGSLLCAVFSHSTADFFLSVGLGL 177
+ +P+R I GIG E L + +G+++ E+ Q K +L+ A S + A + GL
Sbjct: 191 VQMMPLRGIPGIGPSLEKRL-NAWGVHSVAELAQMDKAALIQATGSPAAARGLWAASHGL 249
Query: 178 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
S R KSI SERT + T D ++ R L + ++ ++++GL RTLT+KL+
Sbjct: 250 DSREIATTREEKSIGSERTLTEDTRDMHIVCRLLRSACDEVARTLRRKGLVARTLTVKLR 309
Query: 237 TASFEVRTRAVTLQKYISSSEDI----LKHASVLL----KAE----LPVSLRLIGLRVTQ 284
A +TR+ T+++ ++ + ++ ++L AE LP +RL G+ +
Sbjct: 310 FADLSYQTRSFTMEQPTDTASTLYPECVRQLKIMLGIPANAEPTTPLPKLIRLAGMSTSS 369
Query: 285 FNEDKVRA 292
+E A
Sbjct: 370 LSEAHATA 377
>gi|16804014|ref|NP_465499.1| DNA polymerase IV [Listeria monocytogenes EGD-e]
gi|386050951|ref|YP_005968942.1| DNA polymerase IV [Listeria monocytogenes FSL R2-561]
gi|404284471|ref|YP_006685368.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2372]
gi|405759025|ref|YP_006688301.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2479]
gi|22095619|sp|Q8Y5T0.1|DPO4_LISMO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|16411428|emb|CAD00053.1| lmo1975 [Listeria monocytogenes EGD-e]
gi|346424797|gb|AEO26322.1| DNA polymerase IV [Listeria monocytogenes FSL R2-561]
gi|404233973|emb|CBY55376.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2372]
gi|404236907|emb|CBY58309.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2479]
Length = 356
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 151/292 (51%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 118
G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 118 GMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDASQIYQAAALLLIESYTGQDSIRLIGLTVTNL 343
>gi|255100011|ref|ZP_05328988.1| DNA polymerase IV [Clostridium difficile QCD-63q42]
gi|255305898|ref|ZP_05350070.1| DNA polymerase IV [Clostridium difficile ATCC 43255]
gi|423090257|ref|ZP_17078565.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
gi|357556932|gb|EHJ38503.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
Length = 365
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 155/300 (51%), Gaps = 22/300 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++
Sbjct: 60 MPSAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVTK--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
I S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F
Sbjct: 118 NIDSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEEN--AQDF 175
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVG 174
+ LP+ K G+GKVT + L+++ GI T C + + L +F + +
Sbjct: 176 LDKLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFA 229
Query: 175 LGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G+ R RKS+ +E T S + D+ L E+ E + ++ G+TLT
Sbjct: 230 RGIDDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKNSEKFGKTLT 289
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 289
LK+K F TR+++L+ YI DI LL+ + V+ +RL+G+ ++ ++ K
Sbjct: 290 LKIKYEDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGKQIRLLGVTISNLSDKK 348
>gi|212709381|ref|ZP_03317509.1| hypothetical protein PROVALCAL_00417 [Providencia alcalifaciens DSM
30120]
gi|212688293|gb|EEB47821.1| hypothetical protein PROVALCAL_00417 [Providencia alcalifaciens DSM
30120]
Length = 351
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 111/199 (55%), Gaps = 6/199 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
M +A KLCP L VP Y S R++F +Y SLDEAYLD+T+ C++
Sbjct: 57 MSTALALKLCPHLKVVPGRMAVYKEVSHHIRQIFARYTDLIEPLSLDEAYLDVTD-CQQL 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IAE +R +++E LT SAG+AP + LAK+ SD+NKPNGQFV+ + TF+
Sbjct: 116 HGSATLIAEAIRQQIFDELQLTASAGIAPIKFLAKIASDMNKPNGQFVITPQELP--TFV 173
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADFFLSVGLGLGS 179
+SLP++KI G+GKVT L D+ G+ TC + +QK +L + S G+
Sbjct: 174 ASLPLKKIPGVGKVTAQKLADM-GLLTCSD-VQKYDMLALIKSMGKFGQALWERCHGIDE 231
Query: 180 TNTPQARFRKSISSERTFS 198
R RKS+ ERT +
Sbjct: 232 RAVNPERLRKSVGVERTLA 250
>gi|440288953|ref|YP_007341718.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
gi|440048475|gb|AGB79533.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
Length = 351
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 154/298 (51%), Gaps = 26/298 (8%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP +A KLCP L +P F Y S+ R++F +Y SLDEAYLD+++
Sbjct: 57 MPTGMALKLCPHLTLLPGRFDAYKEASEHIREIFSRYTSLIEPLSLDEAYLDVSDSVHCH 116
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
G S IA+E+R +++ E LT SAG+AP + LAK+ SD+NKPNGQFVL P D V F
Sbjct: 117 G-SATLIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQFVLTPAD---VPAF 172
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLG 176
+ +LP+ KI G+GKV+ L + G+ TCE++ QK L A+ F G
Sbjct: 173 LKTLPLEKIPGVGKVSAAKL-ESMGLKTCEDV-QKSDL--AMLLKRFGKFGRILWERSQG 228
Query: 177 LGSTNTPQARFRKSISSERTFSVTED-------KALLYRKLAEIAEMLSADMQKEGLRGR 229
+ R RKSI ERT + ED +A++ R E+ LS ++ + L R
Sbjct: 229 IDERAINNERLRKSIGVERTLA--EDIHDWSACEAIIERLYPELERRLS-KVKPDLLIAR 285
Query: 230 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 286
+KLK F++ T+ + + ED++ A + +RL+GL VT +
Sbjct: 286 Q-GVKLKFNDFQLTTQEHVWPRL--NKEDLIATAYKTWHERRAGRGVRLVGLHVTLLD 340
>gi|257056496|ref|YP_003134328.1| DNA repair nucleotidyltransferase/DNA polymerase [Saccharomonospora
viridis DSM 43017]
gi|256586368|gb|ACU97501.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Saccharomonospora viridis DSM 43017]
Length = 415
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 146/287 (50%), Gaps = 10/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ARKLCP +++P Y+ S +F + P SLDEA+LD+ R
Sbjct: 81 MPVAAARKLCPHAVYLPPSRGLYSEVSRSVMALFREITPLVEPLSLDEAFLDVGGALRRL 140
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G + EI LR V E G+TCS GVA + +AK+ S + KP+G V+P + ++F+
Sbjct: 141 GATATEIGARLRARVEAEHGVTCSVGVAGMKFVAKLASGMAKPDGMVVVPVEE--TVSFL 198
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADFFLSVGLGLGS 179
LP+ + G+G T +LR G++T ++ L +TA+ ++ G
Sbjct: 199 HPLPVSALWGVGPKTAEVLRG-HGLHTIADIAATPPDRLRRWVGVATAEQLHALAHGRDE 257
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
KS+ +ERTF D+ R+L +++E +++ ++ GLRGRT+++K++ +
Sbjct: 258 RRVVPETEEKSLGAERTFDTDLSDREAQRRQLLDLSEKVASTLRHRGLRGRTVSIKVRFS 317
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRV 282
F TRA TL + +I A LL+ PV RL+G+RV
Sbjct: 318 DFRTVTRARTLPSATDVAREIHSTAVALLEEMGTTAPV--RLLGVRV 362
>gi|326800591|ref|YP_004318410.1| DNA polymerase IV [Sphingobacterium sp. 21]
gi|326551355|gb|ADZ79740.1| DNA polymerase IV [Sphingobacterium sp. 21]
Length = 354
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 163/298 (54%), Gaps = 36/298 (12%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A++LCP+++FV F Y S+ R +F +Y SLDEAYLD++E + GI S
Sbjct: 64 AQQLCPQVLFVRPRFEVYKSVSNQIRSIFHRYTDIIEPLSLDEAYLDVSE--DKLGIGSA 121
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
IEIA+E++ ++ E LT SAGV+ N+ +AK+ SD+NKP+G F+ P+ + FI +L
Sbjct: 122 IEIAKEIKNAIRTELHLTASAGVSTNKFVAKIASDMNKPDGLTFIGPSR---IEAFIEAL 178
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG-----LGLG 178
PI+K GIGKVT +N+ + + KG+ L + + F VG + G
Sbjct: 179 PIQKFYGIGKVTAK------KMNSLQ--IYKGADLKKLSKDHLLNLFGKVGNFYYNIVRG 230
Query: 179 STNTPQARFR--KSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
P FR KSI +E TF+ + E++ L+ +L IA+ + ++ + + G TLTLK
Sbjct: 231 IDERPVQTFRELKSIGAEDTFTSDLMEEQELIM-ELKLIAQRVVKRLEAKQVLGSTLTLK 289
Query: 235 LKTASFEVRTRAVTLQKYISSSE------DILKHASVLLKAELPVSLRLIGLRVTQFN 286
+K A F+ TR T I ++ D+LK A + K +RL+GL V+ FN
Sbjct: 290 IKFADFKQITRNYTHSNLIHLNQVEAFGIDLLKAAPIDGK-----PIRLLGLTVSNFN 342
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,914,231,458
Number of Sequences: 23463169
Number of extensions: 329345268
Number of successful extensions: 859870
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4976
Number of HSP's successfully gapped in prelim test: 2135
Number of HSP's that attempted gapping in prelim test: 842605
Number of HSP's gapped (non-prelim): 8519
length of query: 522
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 375
effective length of database: 8,910,109,524
effective search space: 3341291071500
effective search space used: 3341291071500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)