BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009922
(522 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1
Length = 870
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 119
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 293
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 294 SDPTQKTLTNFMTSGHAS 311
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 152 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEER 211
>sp|Q9QUG2|POLK_MOUSE DNA polymerase kappa OS=Mus musculus GN=Polk PE=1 SV=1
Length = 852
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 181 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 294
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 295 DPTQKTLTNFMTSGHASKKIVGD 317
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 151 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER 210
>sp|O74944|POLK_SCHPO DNA polymerase kappa OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug40 PE=1 SV=3
Length = 547
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 173/293 (59%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP FIARK+CP+L+ +P + ++Y S + V +YD N AS+DE Y+++T R +
Sbjct: 180 MPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLTSHLRLQ 239
Query: 61 GIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 115
++ +E + E++R V+EE G+T S G+A N+LLAK+ S+ KPN QF +P D +
Sbjct: 240 ELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIG 299
Query: 116 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 175
+ F++ LP+R++ GIG+V E L + I TC ++ + +L +F + L
Sbjct: 300 ISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVILSYIFLPKSFQNLLRCSY 358
Query: 176 GLGSTNTPQ--ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 232
G G+T + RK+I SE TFS +++ KL + + +S ++QK GL ++
Sbjct: 359 GFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQKRGLVTNSIA 418
Query: 233 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF 285
+K KT+ F+V T+ ++ ++I S D+LK A LL+ P+++RL+G+R T+
Sbjct: 419 IKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIRLLGVRATKL 471
>sp|P34409|POLK_CAEEL DNA polymerase kappa OS=Caenorhabditis elegans GN=polk-1 PE=3 SV=3
Length = 596
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 196/382 (51%), Gaps = 69/382 (18%)
Query: 1 MPGFIARKLCPELIFVPTD---FTKYT---------------------YYSDLT------ 30
MPGFI+ KLCP L VP + +TK + + DLT
Sbjct: 134 MPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFIDLTDYVASN 193
Query: 31 --RKVF----------C---KYDPN---FMAASLDEAYLDITEVCR-------ERGISGI 65
+K F C ++D N ++E+ E R E G
Sbjct: 194 TEKKTFKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIYYDHVEFGTGRE 253
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+M F+ LPI
Sbjct: 254 EAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIMEFLKDLPI 313
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 185
RK+GGIG+V E L+ I T +M K +L F+ + + FL LGL +
Sbjct: 314 RKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALGLPGRPSESD 372
Query: 186 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTLKLKTASFEVRT 244
RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TLKLK +SF+V T
Sbjct: 373 PRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLKLSSFDVLT 432
Query: 245 RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPSDPTQKTLT 302
R++T + S EDI K + LL+ E +RL+G+R++Q F ED+ + KT+T
Sbjct: 433 RSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR-----SKTIT 487
Query: 303 NFMTSGHASKKIVGDQNSLGSD 324
F ++K + QN GS+
Sbjct: 488 EFW-----NEKKLQIQNLQGSE 504
>sp|P58965|DPO4_THETN DNA polymerase IV OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=dinB PE=3 SV=1
Length = 384
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 164/289 (56%), Gaps = 11/289 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ++A+KLCP+ IF+P +Y S+ ++ P S+DEAYLD+T V +
Sbjct: 57 MPMYMAKKLCPQGIFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVTHVDK-- 114
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA E++ V + GLT S G++ N+ LAK+ SD NKP+G V+ D V +
Sbjct: 115 --NPEDIALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITED--MVPEIL 170
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
LP+ K+ GIG+ + LR + GI T E++L+ L +F + + + + G+
Sbjct: 171 KPLPVTKVHGIGEKSAEKLRSI-GIETVEDLLKLPQENLIELFGKTGVEIYNRIR-GIDE 228
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R KSI E+T T++K LL + L E +E++S ++ KE L RT+T+K+KTA
Sbjct: 229 RPVETMREIKSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVKIKTA 288
Query: 239 SFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 286
F V T++ T+ KYI SEDI + A +L + +L +RLIGL V+ +
Sbjct: 289 DFAVHTKSKTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGLSVSNLS 337
>sp|Q8UJK7|DPO42_AGRT5 DNA polymerase IV 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=dinB2 PE=3 SV=2
Length = 357
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A + CP+LIFVP F Y S R +F +Y SLDEAYLD+TE +
Sbjct: 56 MPSVTAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGM 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
I+ EIA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F
Sbjct: 116 EIA-TEIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---F 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L ++K G+G T + FGI T ++ K A + +F + G+
Sbjct: 172 VEQLAVKKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E TFSV D L +L +AE + + + + G+T+T+K+K +
Sbjct: 231 RQVRPDRIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYS 290
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 289
F TR+ T ++ ++IL+ AS LL P S+RL+G+ ++ D+
Sbjct: 291 DFTQATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQ 343
>sp|Q5FSM8|DPO4_GLUOX DNA polymerase IV OS=Gluconobacter oxydans (strain 621H) GN=dinB
PE=3 SV=1
Length = 356
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 151/290 (52%), Gaps = 9/290 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++LCPEL+FVP F Y S +F +Y P SLDEAYLD+T+
Sbjct: 58 MPSVTAKRLCPELLFVPARFDVYRSVSAQIHDIFSRYTPLIQPLSLDEAYLDLTDHLGAY 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S +A+ +R ++ E GLT SAGV+ NR LAK+ SD KP+G FV+ M F+
Sbjct: 118 G-SATLVADRIRADIHAETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPAMGP-EFV 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
++LP+ GIG +R GI T ++ ++ A F+ + G+
Sbjct: 175 AALPVDAFHGIGPAMARKMR-ALGIETGADLRERDIETLTRHFGKAATFYYGISRGIDHR 233
Query: 181 NTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238
R RKS+ +E+T+ +T + A ++ L +IA L Q+ L+ RT+TLK+K A
Sbjct: 234 PVVVNRERKSLGTEQTYLRDLTSE-ADAHQALTQIAATLWGSAQRRQLQARTVTLKVKYA 292
Query: 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F TRA TL + S E +L+ L+ P +RL+GL ++ F+
Sbjct: 293 DFRQITRARTLSAPVPSEEVLLETGQSLMAPLFPFVPGVRLLGLTLSGFH 342
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 158/297 (53%), Gaps = 21/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE
Sbjct: 59 MPAVRAERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTEPK--- 115
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SG+E IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 116 --SGMELATDIARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 171
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F+ LP+ ++ G+GKV E L GI TC ++ Q + S + G
Sbjct: 172 DAFLLPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARG 230
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + +SISSE TF+ ED L L + ++AE +K G T+ LK
Sbjct: 231 VDERPVEPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWNATRKTERVGHTVVLK 288
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ ++ F +
Sbjct: 289 LKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPADTRYRLVGVGLSGFRD 344
>sp|B2FLR2|DPO4_STRMK DNA polymerase IV OS=Stenotrophomonas maltophilia (strain K279a)
GN=dinB PE=3 SV=1
Length = 364
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 156/297 (52%), Gaps = 21/297 (7%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R +F ++ SLDEAYLD++E
Sbjct: 59 MPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVSEPK--- 115
Query: 61 GISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 116
SGIE IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V
Sbjct: 116 --SGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--V 171
Query: 117 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 176
F++ LP+ ++ G+GKV E L GI TC ++ Q + S + G
Sbjct: 172 DAFLAPLPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARG 230
Query: 177 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 234
+ + +SISSE TF+ ED L L + ++A +K G T+ LK
Sbjct: 231 IDERPVEPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLK 288
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 287
LKTA F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 289 LKTAQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>sp|Q9JRG1|DPO4_NEIMA DNA polymerase IV OS=Neisseria meningitidis serogroup A / serotype
4A (strain Z2491) GN=dinB PE=3 SV=1
Length = 352
Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>sp|Q5F8N2|DPO4_NEIG1 DNA polymerase IV OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=dinB PE=3 SV=1
Length = 352
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 153/284 (53%), Gaps = 17/284 (5%)
Query: 7 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 66
++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G E
Sbjct: 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG-E 122
Query: 67 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 126
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 180
Query: 127 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 184
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 181 KIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHPV 235
Query: 185 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 242
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F +
Sbjct: 236 KAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 295
Query: 243 RTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 296 ITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>sp|Q8PCW8|DPO4_XANCP DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
ATCC 33913 / NCPPB 528 / LMG 568) GN=dinB PE=3 SV=1
Length = 359
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 165/299 (55%), Gaps = 15/299 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+TE +
Sbjct: 56 MPAVRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ LP+ +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 172 LLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 230 ERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLK 287
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNEDKVRA 292
T++F + TR+ T ++ +S + ++ A L + ELP RL+G+ ++ F++ +++A
Sbjct: 288 TSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSGFSDPELQA 346
>sp|Q4UQI2|DPO4_XANC8 DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
8004) GN=dinB PE=3 SV=1
Length = 359
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 165/299 (55%), Gaps = 15/299 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+TE +
Sbjct: 56 MPAVRAERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ LP+ +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 172 LLPLPVNRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 230 ERPVEPDQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLK 287
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNEDKVRA 292
T++F + TR+ T ++ +S + ++ A L + ELP RL+G+ ++ F++ +++A
Sbjct: 288 TSNFRILTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSGFSDPELQA 346
>sp|Q0A4X2|DPO4_ALHEH DNA polymerase IV OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=dinB PE=3 SV=1
Length = 355
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 161/288 (55%), Gaps = 12/288 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP + A +LCP+ +F+ F Y S + +F +Y P SLDEAYLD+++ C R
Sbjct: 59 MPAWRAARLCPDAVFLRPRFDVYRSISAQIQALFREYTPLVEPLSLDEAYLDVSD-CPRR 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G S IA E+R ++E+ GLT SAGV+ N+ LAK+ SD++KP+G V+P ++ F+
Sbjct: 118 GGSATLIAREIRARIHEQTGLTASAGVSCNKFLAKIASDLDKPDGLHVIPPEQ--AEAFV 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
++LP+ KI G+G+ T + + G+ T ++ + L S A F+ + G
Sbjct: 176 AALPVGKIHGVGQATRQRM-ERMGVRTGADLRRLTLLELQRAFGSRARFYYELARGRDER 234
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKS+ +E TF + A + ++A +A+ ++A + + GL GRT+TLK+K
Sbjct: 235 PVRPRRERKSVGAETTFGEDLNNPAEMLERMAPLADKVAASLHRRGLAGRTVTLKVKYHD 294
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 283
F TR+++ + + S+++I LL+ + PV RL+G+ V+
Sbjct: 295 FRQITRSLS-GRPVQSADEIRARLPALLQDTEAGDRPV--RLLGVTVS 339
>sp|A1KUQ3|DPO4_NEIMF DNA polymerase IV OS=Neisseria meningitidis serogroup C / serotype
2a (strain ATCC 700532 / FAM18) GN=dinB PE=3 SV=1
Length = 352
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 17/285 (5%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 282
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>sp|Q8PGJ4|DPO4_XANAC DNA polymerase IV OS=Xanthomonas axonopodis pv. citri (strain 306)
GN=dinB PE=3 SV=1
Length = 359
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 156/293 (53%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DFT+Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>sp|Q92XH8|DPO42_RHIME DNA polymerase IV 2 OS=Rhizobium meliloti (strain 1021) GN=dinB2
PE=3 SV=2
Length = 354
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 7/289 (2%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R
Sbjct: 56 MPSVTAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGL 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
++ EIAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ F+
Sbjct: 116 KLA-TEIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGP--DFV 172
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 180
+LP++K G+G T ++ + GI T ++ + + +F + G+
Sbjct: 173 QALPVKKFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDER 231
Query: 181 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 239
R RKSI +E TF D L + + + + G+RG+T+TLK+K A
Sbjct: 232 KVKPDRIRKSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWAD 291
Query: 240 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 286
F TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 292 FTQITRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 340
>sp|Q3BP42|DPO4_XANC5 DNA polymerase IV OS=Xanthomonas campestris pv. vesicatoria (strain
85-10) GN=dinB PE=3 SV=1
Length = 359
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 156/293 (53%), Gaps = 13/293 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T +
Sbjct: 56 MPAVRAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F
Sbjct: 114 GMQLATEVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
+ L + +I G+GKV + L GI T ++ Q+ S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDE 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT
Sbjct: 231 RPVEPDQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKT 288
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 287
++F + TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 289 SNFRILTRSYTPEQPPTSQEALAQIALALTRRVELPTQTRYRLVGVGLSGFSD 341
>sp|Q98NW7|DPO43_RHILO DNA polymerase IV 3 OS=Rhizobium loti (strain MAFF303099) GN=dinB3
PE=3 SV=1
Length = 361
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 156/294 (53%), Gaps = 16/294 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A++ CPELIFVP F Y S R VF ++ SLDEAYLD+T+ R
Sbjct: 64 MPSVTAKRKCPELIFVPPRFDVYRAVSAQIRDVFAEHTDLIEPLSLDEAYLDVTQ-NRLN 122
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 119
S IAE +R + E GLT SAG++ N+ LAK+ SD NKPNGQFV+ P A F
Sbjct: 123 ISSATTIAEMIRAKILEVTGLTASAGISYNKFLAKMASDQNKPNGQFVITPRHGPA---F 179
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 178
+ +LP+ K G+G T + + GI T ++ ++ S L F S ++ + +
Sbjct: 180 VETLPVNKFHGVGPATAAKM-EALGIETGADLKERSLSFLQQHFGKSGL-WYYQIARAID 237
Query: 179 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKL 235
R RKSI +E TF+ D L LAE+ +++ + +G+RGRT+TLK+
Sbjct: 238 ERAVDPDRPRKSIGAEDTFAA--DIVDLETSLAELKPLVAKVWGYCEGKGIRGRTVTLKI 295
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 287
K A F+ TR+ T+ I S D A+ LL + PV +RL+G+ ++ +
Sbjct: 296 KFADFQQITRSRTVAVPIELS-DFEHLAADLLGSVFPVRKGIRLLGVTLSSLGD 348
>sp|Q1JF59|DPO4_STRPD DNA polymerase IV OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=dinB PE=3 SV=1
Length = 364
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>sp|A2RCQ1|DPO4_STRPG DNA polymerase IV OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=dinB PE=3 SV=1
Length = 364
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>sp|Q48RJ4|DPO4_STRPM DNA polymerase IV OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=dinB PE=3 SV=1
Length = 364
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 166/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGITMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>sp|Q8NZI1|DPO4_STRP8 DNA polymerase IV OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=dinB PE=3 SV=1
Length = 364
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>sp|Q5XA48|DPO4_STRP6 DNA polymerase IV OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=dinB PE=3 SV=1
Length = 364
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 166/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>sp|Q99Y66|DPO4_STRP1 DNA polymerase IV OS=Streptococcus pyogenes serotype M1 GN=dinB
PE=3 SV=1
Length = 364
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 167/302 (55%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEIA---EMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI+ + ++A +Q G+T
Sbjct: 242 ISNSPVKYDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>sp|Q6FFG4|DPO4_ACIAD DNA polymerase IV OS=Acinetobacter sp. (strain ADP1) GN=dinB PE=3
SV=1
Length = 351
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 158/295 (53%), Gaps = 19/295 (6%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ARKLCP+LI + +F KY S ++F ++ SLDEAYLD+TE
Sbjct: 56 MPMGQARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNL 115
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S ++A ++R ++E+ LT SAGVAPN+ LAK+ SD NKPNG V+ + VM FI
Sbjct: 116 P-SATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQ--VMQFI 172
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
+LP++KI G+G+VT+ L+ + + T ++ + ++L F +L G+
Sbjct: 173 QNLPLKKIPGVGRVTQDKLQQL-KLETLGDLQHIEEAVLIQHFGKYGKQLYL-YAQGIDH 230
Query: 180 TNTPQARFRKSISSERTFSVTEDKALLYRKLAE----IAEMLSADMQKEGLRGRTLTLKL 235
+ R R+ IS E TF D+ L + + +AE + +Q + L+ R + +KL
Sbjct: 231 RSVQAERVRQQISKETTF----DQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKL 286
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL----RLIGLRVTQFN 286
K F+V + + ++ + S ++ K LL E+ ++L RLIG+ + Q +
Sbjct: 287 KNKHFQVFQHSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQYRLIGVGLYQLS 340
>sp|Q2P7M9|DPO4_XANOM DNA polymerase IV OS=Xanthomonas oryzae pv. oryzae (strain MAFF
311018) GN=dinB PE=3 SV=1
Length = 359
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 157/293 (53%), Gaps = 15/293 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A +LCP IFVP DF +Y S R++F ++ SLDEAYLD+T+ +
Sbjct: 56 MPAVRAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KT 113
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
G+ EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F
Sbjct: 114 GMQLATEIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAF 171
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 178
+ L + +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 172 LLPLKVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGID 229
Query: 179 STNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLK
Sbjct: 230 ERPVEPDQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLATRRTERIGRTVVLKLK 287
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN 286
T++F + TR+ T ++ S E + + A L + ELP RL+G+ ++ F+
Sbjct: 288 TSNFRILTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFS 340
>sp|Q1JK63|DPO4_STRPC DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=dinB PE=3 SV=1
Length = 364
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 166/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY + R++F +Y S+DEAYLD+T + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>sp|Q1JA16|DPO4_STRPB DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=dinB PE=3 SV=1
Length = 364
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 166/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY + R++F +Y S+DEAYLD+T + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>sp|Q9JYS8|DPO4_NEIMB DNA polymerase IV OS=Neisseria meningitidis serogroup B (strain
MC58) GN=dinB PE=3 SV=1
Length = 318
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 137/247 (55%), Gaps = 12/247 (4%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 125
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 126 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 183
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 184 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 241
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 242 VRTRAVT 248
+ TR +T
Sbjct: 295 IITRTLT 301
>sp|Q02WA3|DPO4_LACLS DNA polymerase IV OS=Lactococcus lactis subsp. cremoris (strain
SK11) GN=dinB PE=3 SV=1
Length = 364
Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 159/295 (53%), Gaps = 22/295 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYLD+TE + S I
Sbjct: 75 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYLDVTE-NKIGAQSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P++ + F++ LP
Sbjct: 134 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPDE---ALEFLAKLP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L G T ++ + + L F + F G+ ++
Sbjct: 191 VEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAEKFGIYGWELFQKAN-GIHNSKVK 248
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ ERT+ LLY +L +I++ +S +++ L+G + LKL+
Sbjct: 249 NHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKRHQLKGNIIILKLRY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDK 289
+ F T+ ++ + + S EDI + A + + + + +RL+G+ V+ F K
Sbjct: 304 SDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDESLGVRLLGVTVSGFGVQK 358
>sp|Q1J509|DPO4_STRPF DNA polymerase IV OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=dinB PE=3 SV=1
Length = 364
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 165/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAY+D+T + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYVDVTN--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ L K+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDMWKEVGLTCSAGVSYNKFLGKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTMTNL-ED 355
Query: 289 KV 290
KV
Sbjct: 356 KV 357
>sp|A2RNH9|DPO4_LACLM DNA polymerase IV OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=dinB PE=3 SV=1
Length = 364
Score = 139 bits (349), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 159/295 (53%), Gaps = 22/295 (7%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYLD+TE + S I
Sbjct: 75 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYLDVTE-NKIGAQSAI 133
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P++ + F++ LP
Sbjct: 134 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPDE---ALEFLAKLP 190
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 183
+ K G+GK T L G T ++ + + L F + F G+ ++
Sbjct: 191 VEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAERFGIYGWELFQKAN-GIHNSKVK 248
Query: 184 QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
R RKS+ ERT+ LLY +L +I++ +S +++ L+G + LKL+
Sbjct: 249 NHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKRHQLKGNIIILKLRY 303
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNEDK 289
+ F T+ ++ + + S EDI + A + + + + +RL+G+ V+ F K
Sbjct: 304 SDFTTLTKRKSMVENLDSPEDIAEAARQIFEEIDYDESLGVRLLGVTVSGFGVQK 358
>sp|B8FBE8|DPO4_DESAA DNA polymerase IV OS=Desulfatibacillum alkenivorans (strain AK-01)
GN=dinB PE=3 SV=1
Length = 396
Score = 138 bits (348), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 153/291 (52%), Gaps = 13/291 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP ARKLCP +F+P +Y S ++F +Y P SLDEA++D+T R
Sbjct: 58 MPIVTARKLCPRGVFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVTSSTRLF 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
G SG EIA +R + G+T SAG+A N+L+AK+ SD+ KPNG V+P D+ F+
Sbjct: 118 G-SGEEIAANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPADQ--TQEFL 174
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGS 179
LPI ++ G+G + + L G+ T ++ + +L A F + + + G+
Sbjct: 175 DPLPISRLWGVGPASRNKLIS-LGVKTIRDVRKLTQEMLSANFGRN-GEVIYAFARGMDD 232
Query: 180 TNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
KSI E TF T ++A Y+ + ++E ++ M+KE GRT+ +K+K
Sbjct: 233 RPVEPPGAAKSIGREITFDRNVYTLEEA--YKWMLFLSERVARRMRKEEATGRTVNIKVK 290
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 285
A F TR+VTL+ +I HA LL+ L S +RL+G+ ++Q
Sbjct: 291 YADFIQVTRSVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQL 341
>sp|A1WY69|DPO4_HALHL DNA polymerase IV OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=dinB PE=3 SV=1
Length = 356
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 147/295 (49%), Gaps = 12/295 (4%)
Query: 2 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 61
P AR+ CPE IF+ F +Y S +F + SLDEAYLD+T R RG
Sbjct: 60 PAAWARRRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRG 119
Query: 62 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 121
S +A+ +R + EE GLT SAGV+ N+LLAK+ SD KP+G +V+P + +++
Sbjct: 120 -SATHMAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGP--AYVA 176
Query: 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 181
+ PIR++ G+G T L + GI ++L VF + A G+
Sbjct: 177 AQPIRRLHGVGPATAARL-ERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRP 235
Query: 182 TPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 240
R RKSI +ERTF T D ++++LA + ++ ++ L RT+TLKL+ A F
Sbjct: 236 VRPRRSRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHHELVARTVTLKLRYADF 295
Query: 241 EVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSL---RLIGLRVTQFNED 288
E TR V+ ++ + DI LL PV L L GL+ Q +D
Sbjct: 296 ESITRRVSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPKQREQD 350
>sp|Q2A3L2|DPO4_FRATH DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=dinB PE=3 SV=1
Length = 349
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 158/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 292 FTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>sp|A7NC07|DPO4_FRATF DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain FTNF002-00 / FTA) GN=dinB PE=3 SV=1
Length = 349
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 158/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 292 FTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>sp|B2UKN1|DPO4_AKKM8 DNA polymerase IV OS=Akkermansia muciniphila (strain ATCC BAA-835)
GN=dinB PE=3 SV=1
Length = 359
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 149/295 (50%), Gaps = 13/295 (4%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP LIF Y S +F +Y SLDEA+LD+TE +
Sbjct: 58 MPSMKALKLCPHLIFTRNRMDVYKAVSAQIHAIFHRYTDLVEPLSLDEAFLDVTE--NKP 115
Query: 61 GIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 119
GI ++IA ++ + E LT SAGV+ N+ LAK+ SD KP+G F + R F
Sbjct: 116 GIPLAVDIARRIKKEIRRELHLTASAGVSYNKFLAKIASDYRKPDGLFTIHPSRAE--KF 173
Query: 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 179
I++LPI G+G T +R + N + + L F + A F+ + G+
Sbjct: 174 IAALPIEAFWGVGHATAERMRALSITNGAQLRARDKDFLVRHFGKTGAIFY-NFARGVDD 232
Query: 180 TNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+R RKS+ E T+ +VT +AL R L +AE L+ + + G RG TLTLK+K
Sbjct: 233 RPVEPSRMRKSVGCEETYRENVTRAEALEQR-LPLLAEELAGRLARSGFRGNTLTLKVKF 291
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNEDK 289
F +TR T+ + ++ E IL A L++ EL + RL+GL V+ E++
Sbjct: 292 PDFVQKTRCATVPEILTEKEGILPLARTLME-ELDSGDRTFRLLGLSVSHPQEEQ 345
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 164/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ + A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVVALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTMTNL-ED 355
Query: 289 KV 290
K+
Sbjct: 356 KM 357
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 164/302 (54%), Gaps = 36/302 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 64
A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ + GI S
Sbjct: 75 AYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NKLGIKSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D + F++ L
Sbjct: 133 VKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---ALCFLAKL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
PI K G+GK + L D+ GI T +++L AV + D F G L G
Sbjct: 190 PIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLYRKARG 241
Query: 179 STNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 230
+N+P R RKSI SERT++ LLY++ AEI A+ + A +Q G+T
Sbjct: 242 ISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVVALLQDHKKLGKT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNED 288
+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTMTNL-ED 355
Query: 289 KV 290
K+
Sbjct: 356 KM 357
>sp|Q0BM23|DPO4_FRATO DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain OSU18) GN=dinB PE=3 SV=1
Length = 349
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 158/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYYFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 292 FTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>sp|B0TZS5|DPO4_FRAP2 DNA polymerase IV OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=dinB PE=3 SV=1
Length = 350
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 157/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKATSAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+++ + TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKNM-NVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + L++ M +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLEACLEKLPNLYNKLTSRMTEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + + +LK+ + L + +RLIG+ +
Sbjct: 292 FTDTKFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHIRLIGIGI 336
>sp|Q9CE21|DPO4_LACLA DNA polymerase IV OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=dinB PE=3 SV=1
Length = 363
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 159/296 (53%), Gaps = 24/296 (8%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 65
A LCP+ IF+ ++ KYT S R++F +Y + AAS+DEAYLD+TE + S I
Sbjct: 74 AYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDDIEAASIDEAYLDVTE-NKIGAQSAI 132
Query: 66 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 124
+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P + + F++ LP
Sbjct: 133 KIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMPEE---ALEFLAKLP 189
Query: 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNT 182
+ K G+GK T L + N + LQK L F + + G+ ++
Sbjct: 190 VEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLAERFGVYGWELYQKAN-GIHNSKV 246
Query: 183 PQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEGLRGRTLTLKLK 236
R RKS+ ERT+ LLY +L++I+ +S ++ L+G + LKL+
Sbjct: 247 KNYRERKSVGKERTYG-----KLLYLPDDIKAELSKISGKVSDSLKSHQLKGSIVILKLR 301
Query: 237 TASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIGLRVTQFNEDK 289
+ F T+ +L + + S E+I + A + L+ + + +RL+G+ VT+F K
Sbjct: 302 YSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYDESLGVRLLGVTVTEFGAQK 357
>sp|P58964|DPO4_STAAW DNA polymerase IV OS=Staphylococcus aureus (strain MW2) GN=dinB
PE=3 SV=1
Length = 356
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>sp|Q6G838|DPO4_STAAS DNA polymerase IV OS=Staphylococcus aureus (strain MSSA476) GN=dinB
PE=3 SV=1
Length = 356
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>sp|A6QIC3|DPO4_STAAE DNA polymerase IV OS=Staphylococcus aureus (strain Newman) GN=dinB
PE=3 SV=1
Length = 356
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>sp|Q5HEM7|DPO4_STAAC DNA polymerase IV OS=Staphylococcus aureus (strain COL) GN=dinB
PE=3 SV=1
Length = 356
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 11/287 (3%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R
Sbjct: 59 MPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP- 117
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
+ +IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V +
Sbjct: 118 DLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDIL 175
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGS 179
+L I G+GK ++ ++ D GI ++ +K L +F + + G+
Sbjct: 176 MTLDIGDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDH 233
Query: 180 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237
+ +R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT
Sbjct: 234 SEVKSSRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKT 292
Query: 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 282
FE ++ ++L+ +SS EDI A +L + V +RLIG+ V
Sbjct: 293 YQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTV 339
>sp|B2SH34|DPO4_FRATM DNA polymerase IV OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=dinB PE=3 SV=1
Length = 349
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 157/288 (54%), Gaps = 17/288 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E
Sbjct: 60 MPTAIAMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEY 118
Query: 61 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 120
S IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+
Sbjct: 119 KNSATLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFV 176
Query: 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLG 178
LP++K+ G+GKV++ L+ G+ TC + LQ+ SL V F + + + G+
Sbjct: 177 KDLPVKKLFGVGKVSQEKLKST-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGID 233
Query: 179 STNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLK 234
+ R RKS+S E T+ ED L KL + + L++ + +E + + +K
Sbjct: 234 NREVNPVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRITEEHYKSIIGIVVK 291
Query: 235 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 282
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 292 FTDTKFN-KTSLTRVAKIL--DKEMLKNLIIELHQKQNHPIRLIGIGV 336
>sp|A4VZ21|DPO4_STRS2 DNA polymerase IV OS=Streptococcus suis (strain 98HAH33) GN=dinB
PE=3 SV=1
Length = 355
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 160/298 (53%), Gaps = 35/298 (11%)
Query: 6 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 64
A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE + GIS
Sbjct: 75 AYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NKLGISSA 132
Query: 65 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 123
++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++ +SL
Sbjct: 133 VKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL---ASL 189
Query: 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----G 178
P+ K G+GK T L ++ G+ T +++L ++ D F G L G
Sbjct: 190 PVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDLYRKARG 241
Query: 179 STNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRGRT 230
+N+P R RKS ERT+ + LLYR +L + + ++A +++ G +GRT
Sbjct: 242 ISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRNGKKGRT 296
Query: 231 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 286
+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ VT F
Sbjct: 297 IVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKGIRLLGVTVTNFQ 354
>sp|A0AK80|DPO4_LISW6 DNA polymerase IV OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=dinB PE=3 SV=1
Length = 356
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 153/292 (52%), Gaps = 15/292 (5%)
Query: 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 60
MP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++
Sbjct: 60 MPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKK 117
Query: 61 GI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 118
G+ S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+ P + A
Sbjct: 118 GMKSATMVARDIQQTIYHELGLTASAGVSFNKFIAKIASDFKKPAGMTVVAPEEAEA--- 174
Query: 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 176
F+ +P+ K G+GKVT L + GI T ++ + L+ + H + G
Sbjct: 175 FLEQIPVTKFYGVGKVTAEKLHRL-GIETGADLKKWSEWDLIRELHKHGYHLYRHVRGRS 233
Query: 177 LGSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 235
N P R RKS+ E TF D +L + L + A+ + A + K G+T+ LKL
Sbjct: 234 NNIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEARLIKLQKHGKTVVLKL 291
Query: 236 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 285
+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 292 RYSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,212,614
Number of Sequences: 539616
Number of extensions: 8096876
Number of successful extensions: 22152
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 21314
Number of HSP's gapped (non-prelim): 318
length of query: 522
length of database: 191,569,459
effective HSP length: 122
effective length of query: 400
effective length of database: 125,736,307
effective search space: 50294522800
effective search space used: 50294522800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)