Query 009922
Match_columns 522
No_of_seqs 172 out of 1423
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pzp_A DNA polymerase kappa; D 100.0 1E-59 3.5E-64 512.0 32.8 288 1-289 141-509 (517)
2 3gqc_A DNA repair protein REV1 100.0 5.2E-58 1.8E-62 495.9 31.6 286 1-289 195-499 (504)
3 1jx4_A DNA polymerase IV (fami 100.0 2E-58 6.7E-63 480.3 27.2 280 1-288 59-343 (352)
4 1t94_A Polymerase (DNA directe 100.0 2.1E-58 7.1E-63 496.1 26.9 288 1-289 85-453 (459)
5 3bq0_A POL IV, DBH, DNA polyme 100.0 4.4E-58 1.5E-62 478.0 26.7 279 1-288 59-344 (354)
6 4f4y_A POL IV, DNA polymerase 100.0 7.3E-58 2.5E-62 478.0 28.4 280 1-289 59-345 (362)
7 4dez_A POL IV 1, DNA polymeras 100.0 2.1E-58 7.1E-63 480.8 21.4 283 1-289 61-347 (356)
8 3osn_A DNA polymerase IOTA; ho 100.0 1.3E-56 4.3E-61 477.0 30.9 286 1-289 79-417 (420)
9 2aq4_A DNA repair protein REV1 100.0 3E-54 1E-58 460.7 26.4 285 1-287 112-433 (434)
10 4ecq_A DNA polymerase ETA; tra 100.0 7.5E-54 2.6E-58 457.7 28.9 281 1-287 66-434 (435)
11 3mfi_A DNA polymerase ETA; DNA 100.0 1.4E-53 4.8E-58 463.7 27.1 286 1-289 82-517 (520)
12 1im4_A DBH; DNA polymerase PAL 100.0 5.6E-40 1.9E-44 321.0 14.7 155 1-159 64-220 (221)
13 1unn_C POL IV, DNA polymerase 99.5 3.7E-13 1.3E-17 117.8 11.9 97 189-288 5-106 (115)
14 2i5o_A DNA polymerase ETA; zin 98.8 3.5E-10 1.2E-14 79.9 -0.1 36 429-467 4-39 (39)
15 1wcn_A Transcription elongatio 95.6 0.0084 2.9E-07 47.5 3.7 51 124-175 8-61 (70)
16 3mab_A Uncharacterized protein 94.8 0.032 1.1E-06 46.6 5.0 31 124-155 5-35 (93)
17 3bqs_A Uncharacterized protein 94.5 0.031 1.1E-06 46.7 4.1 31 124-155 5-35 (93)
18 2a1j_A DNA repair endonuclease 93.7 0.076 2.6E-06 41.0 4.7 49 125-175 6-56 (63)
19 1z00_B DNA repair endonuclease 92.8 0.095 3.3E-06 42.9 4.2 49 125-175 20-70 (84)
20 1z3e_B DNA-directed RNA polyme 91.7 0.23 7.8E-06 39.6 4.9 51 120-172 6-59 (73)
21 1b22_A DNA repair protein RAD5 90.0 0.1 3.6E-06 45.1 1.6 54 121-175 21-79 (114)
22 3k4g_A DNA-directed RNA polyme 88.8 0.57 1.9E-05 38.5 5.1 50 121-172 10-62 (86)
23 1ci4_A Protein (barrier-TO-aut 88.2 0.38 1.3E-05 39.7 3.7 33 120-153 15-47 (89)
24 3gfk_B DNA-directed RNA polyme 87.5 0.47 1.6E-05 38.4 3.7 50 120-171 13-65 (79)
25 1kft_A UVRC, excinuclease ABC 85.0 0.63 2.2E-05 36.9 3.4 48 122-171 23-73 (78)
26 1coo_A RNA polymerase alpha su 84.9 0.73 2.5E-05 38.8 3.8 48 122-171 23-73 (98)
27 2a1j_B DNA excision repair pro 82.8 1.3 4.5E-05 36.1 4.5 48 124-173 33-83 (91)
28 1z00_A DNA excision repair pro 82.7 1.4 4.7E-05 35.7 4.5 49 124-174 20-71 (89)
29 2nrt_A Uvrabc system protein C 81.0 1.4 4.7E-05 42.4 4.5 50 122-173 167-218 (220)
30 1pzn_A RAD51, DNA repair and r 80.6 1.4 4.7E-05 44.9 4.7 42 121-163 33-75 (349)
31 1vq8_Y 50S ribosomal protein L 79.6 0.37 1.3E-05 47.0 0.0 49 122-171 14-65 (241)
32 2i1q_A DNA repair and recombin 77.9 1.4 4.7E-05 43.9 3.6 40 123-163 3-43 (322)
33 2kz3_A Putative uncharacterize 76.1 3 0.0001 33.9 4.5 44 121-165 2-46 (83)
34 2va8_A SSO2462, SKI2-type heli 75.9 1.6 5.4E-05 48.4 3.8 49 122-172 656-705 (715)
35 2fmp_A DNA polymerase beta; nu 75.9 1.4 4.8E-05 44.9 3.1 28 125-153 100-127 (335)
36 2p6r_A Afuhel308 helicase; pro 73.1 2.3 8E-05 47.0 4.2 53 122-175 631-683 (702)
37 2bcq_A DNA polymerase lambda; 73.0 1.9 6.6E-05 43.9 3.2 27 126-153 99-125 (335)
38 2duy_A Competence protein come 72.4 2 6.7E-05 33.7 2.5 31 125-155 29-59 (75)
39 1gm5_A RECG; helicase, replica 72.1 1.1 3.9E-05 50.7 1.3 30 123-153 115-144 (780)
40 2ihm_A POL MU, DNA polymerase 71.8 1.8 6.2E-05 44.5 2.7 28 125-153 104-131 (360)
41 2zj8_A DNA helicase, putative 71.6 3.3 0.00011 46.0 4.9 53 122-175 645-700 (720)
42 1x2i_A HEF helicase/nuclease; 71.5 2.5 8.6E-05 32.5 2.9 48 124-173 15-65 (75)
43 1jms_A Terminal deoxynucleotid 70.4 2 7E-05 44.5 2.7 29 124-153 122-150 (381)
44 2q0z_X Protein Pro2281; SEC63, 70.2 5.9 0.0002 40.0 6.1 51 123-174 161-214 (339)
45 3im1_A Protein SNU246, PRE-mRN 70.2 3.9 0.00013 41.1 4.7 52 122-174 156-210 (328)
46 2z43_A DNA repair and recombin 66.7 1.2 4E-05 44.7 0.0 40 123-163 12-52 (324)
47 3tvk_A DGC, diguanylate cyclas 58.7 17 0.00057 33.2 6.3 61 26-89 59-130 (179)
48 3lda_A DNA repair protein RAD5 55.8 8.2 0.00028 40.1 4.1 46 119-165 77-125 (400)
49 3c65_A Uvrabc system protein C 52.2 3 0.0001 40.2 0.0 48 122-171 172-221 (226)
50 2bgw_A XPF endonuclease; hydro 50.8 9.4 0.00032 35.9 3.3 140 23-173 65-213 (219)
51 1u9l_A Transcription elongatio 46.7 19 0.00063 28.1 3.8 44 128-172 11-57 (70)
52 1faq_A RAF-1; transferase, ser 44.2 5.8 0.0002 28.6 0.5 17 427-444 21-37 (52)
53 3vdp_A Recombination protein R 43.1 7.7 0.00026 36.9 1.3 16 125-140 28-43 (212)
54 1dgs_A DNA ligase; AMP complex 43.0 15 0.00053 40.7 3.8 52 119-170 437-491 (667)
55 2w9m_A Polymerase X; SAXS, DNA 42.9 12 0.00042 40.6 3.1 28 125-153 99-126 (578)
56 2owo_A DNA ligase; protein-DNA 40.5 18 0.00063 40.1 3.9 53 119-171 442-497 (671)
57 1v5w_A DMC1, meiotic recombina 40.4 5.9 0.0002 39.9 0.0 41 122-163 23-67 (343)
58 3arc_U Photosystem II 12 kDa e 38.9 12 0.00042 31.1 1.7 31 125-155 28-58 (97)
59 3ign_A Diguanylate cyclase; gg 38.9 60 0.002 28.1 6.5 61 26-89 65-136 (177)
60 1vdd_A Recombination protein R 37.9 10 0.00035 36.4 1.3 16 125-140 14-29 (228)
61 1ixr_A Holliday junction DNA h 37.7 16 0.00054 34.1 2.5 53 124-176 73-129 (191)
62 4f92_B U5 small nuclear ribonu 35.7 18 0.00062 44.5 3.2 41 122-163 1556-1597(1724)
63 1s5l_U Photosystem II 12 kDa e 35.4 16 0.00054 32.3 1.9 31 125-155 65-95 (134)
64 3b0x_A DNA polymerase beta fam 34.4 19 0.00065 39.0 2.8 29 125-153 95-123 (575)
65 3hva_A Protein FIMX; ggdef dig 33.9 69 0.0024 27.6 6.1 59 28-89 72-141 (177)
66 2edu_A Kinesin-like protein KI 33.8 18 0.00061 29.6 2.0 31 125-155 42-76 (98)
67 1znf_A 31ST zinc finger from X 33.0 14 0.00048 21.1 0.9 12 435-446 2-13 (27)
68 2lvt_A Zinc finger and BTB dom 38.5 9.5 0.00033 22.4 0.0 25 434-460 2-26 (29)
69 3hvw_A Diguanylate-cyclase (DG 31.8 41 0.0014 29.5 4.3 60 27-89 57-125 (176)
70 1cuk_A RUVA protein; DNA repai 30.9 19 0.00067 33.8 1.9 55 116-172 68-126 (203)
71 2ihm_A POL MU, DNA polymerase 30.6 37 0.0013 34.6 4.1 53 125-179 63-125 (360)
72 2bcq_A DNA polymerase lambda; 30.4 24 0.00083 35.6 2.7 53 125-179 59-119 (335)
73 2qt7_A Receptor-type tyrosine- 30.2 78 0.0027 26.0 5.1 29 62-90 58-90 (91)
74 2kvf_A Zinc finger and BTB dom 29.3 13 0.00044 21.5 0.3 12 434-445 3-14 (28)
75 2kvh_A Zinc finger and BTB dom 28.8 13 0.00046 21.4 0.3 12 434-445 3-14 (27)
76 1l8d_A DNA double-strand break 28.4 10 0.00035 31.8 -0.5 22 434-455 47-68 (112)
77 3j21_V 50S ribosomal protein L 27.8 20 0.00069 27.8 1.2 14 434-447 4-17 (66)
78 1ard_A Yeast transcription fac 26.9 18 0.00061 20.9 0.6 12 434-445 2-13 (29)
79 4glx_A DNA ligase; inhibitor, 26.1 36 0.0012 37.2 3.2 48 122-170 445-496 (586)
80 2lvu_A Zinc finger and BTB dom 32.0 14 0.00049 21.0 0.0 12 434-445 2-13 (26)
81 1klr_A Zinc finger Y-chromosom 25.9 21 0.00073 20.6 0.8 13 434-446 2-14 (30)
82 1w25_A Stalked-cell differenti 25.8 94 0.0032 31.6 6.3 61 26-89 345-418 (459)
83 2kvg_A Zinc finger and BTB dom 25.7 15 0.00052 21.3 0.1 12 434-445 3-14 (27)
84 1paa_A Yeast transcription fac 25.6 22 0.00075 20.7 0.9 12 434-445 2-13 (30)
85 1jms_A Terminal deoxynucleotid 25.6 38 0.0013 34.8 3.2 53 125-179 82-144 (381)
86 4rxn_A Rubredoxin; electron tr 25.5 19 0.00063 26.8 0.6 10 433-442 35-44 (54)
87 2m0f_A Zinc finger and BTB dom 25.5 17 0.00057 21.0 0.2 12 434-445 2-13 (29)
88 2lvr_A Zinc finger and BTB dom 31.2 15 0.00051 21.5 0.0 12 434-445 3-14 (30)
89 2m0e_A Zinc finger and BTB dom 25.1 23 0.00079 20.2 0.9 13 434-446 2-14 (29)
90 2elr_A Zinc finger protein 406 24.8 23 0.00078 21.8 0.9 12 434-445 9-20 (36)
91 2fmp_A DNA polymerase beta; nu 24.7 61 0.0021 32.6 4.4 53 125-179 59-121 (335)
92 2i5h_A Hypothetical protein AF 24.5 52 0.0018 31.0 3.6 46 125-170 134-185 (205)
93 3ung_C CMR2DHD; ferredoxin fol 23.9 1.1E+02 0.0038 33.9 6.5 65 18-88 459-537 (693)
94 2elx_A Zinc finger protein 406 23.3 19 0.00066 22.0 0.3 12 434-445 7-18 (35)
95 1vq8_U 50S ribosomal protein L 22.8 28 0.00097 26.9 1.1 13 435-447 4-16 (66)
96 3icl_A EAL/ggdef domain protei 22.6 1.7E+02 0.0059 24.7 6.6 62 26-89 56-127 (171)
97 2m0d_A Zinc finger and BTB dom 22.4 21 0.00071 20.6 0.2 12 434-445 3-14 (30)
98 2elm_A Zinc finger protein 406 22.2 21 0.00072 22.6 0.3 11 434-444 9-19 (37)
99 1srk_A Zinc finger protein ZFP 22.1 21 0.00072 21.9 0.3 12 434-445 7-18 (35)
100 2kfq_A FP1; protein, de novo p 21.9 24 0.00081 21.5 0.5 10 434-443 2-11 (32)
101 2elv_A Zinc finger protein 406 21.6 22 0.00075 22.1 0.3 12 434-445 9-20 (36)
102 1rik_A E6APC1 peptide; E6-bind 21.6 22 0.00076 20.5 0.3 12 434-445 2-13 (29)
103 2elq_A Zinc finger protein 406 21.5 22 0.00076 22.0 0.3 13 434-446 9-21 (36)
104 2elt_A Zinc finger protein 406 21.2 23 0.00077 21.9 0.3 12 434-445 9-20 (36)
105 3ung_C CMR2DHD; ferredoxin fol 20.8 27 0.00092 38.7 0.9 13 432-444 265-277 (693)
106 3ezu_A Ggdef domain protein; m 20.5 1.9E+02 0.0064 28.7 7.1 63 23-88 236-305 (342)
107 3i5c_A Fusion of general contr 20.4 74 0.0025 28.2 3.7 60 26-88 87-160 (206)
108 2a6h_A DNA-directed RNA polyme 20.3 22 0.00074 35.8 0.0 48 122-171 253-303 (315)
109 2elp_A Zinc finger protein 406 20.1 25 0.00085 22.0 0.3 12 434-445 9-20 (37)
No 1
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=1e-59 Score=512.04 Aligned_cols=288 Identities=49% Similarity=0.812 Sum_probs=272.8
Q ss_pred CcHHHHHHhCCCcEEECCChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcch-----------------------
Q 009922 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVC----------------------- 57 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp~d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~----------------------- 57 (522)
||+++|+++||+|++||+||+.|+.+|++++.|+.+|+|.||++||||+|||||++.
T Consensus 141 Mp~~~Ak~lCP~Lvvv~~d~~~Y~~~S~~v~~il~~ytp~ve~~SiDEafLDvT~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (517)
T 3pzp_A 141 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVEN 220 (517)
T ss_dssp SCHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHTTCTTCBCCSSSEEEEETHHHHHHHTSCCSTTTEEECC-------
T ss_pred CcHHHHHHhCCceEEECCCHHHHHHHHHHHHHHHHHcCCcEEEECCceEEEEcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999874
Q ss_pred ----------------------------------------------------hhcCCCHHHHHHHHHHHHHHHhCCceEE
Q 009922 58 ----------------------------------------------------RERGISGIEIAEELRTSVYEEAGLTCSA 85 (522)
Q Consensus 58 ----------------------------------------------------~l~g~~~~~lA~~IR~~I~~etGlt~S~ 85 (522)
++||.++.++|++||++|+++|||||||
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~ia~~IR~~I~~~tGlt~S~ 300 (517)
T 3pzp_A 221 DNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASA 300 (517)
T ss_dssp -------------------------------------------------CCEEECCSSHHHHHHHHHHHHHHHHSCCEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcCChHHHHHHHHHHHHHHHhCCeEEE
Confidence 3456468999999999999999999999
Q ss_pred eccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhchHHHHHHcChh
Q 009922 86 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHS 165 (522)
Q Consensus 86 GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~~~L~~~FG~~ 165 (522)
|||+||++|||||+.+||||+++|+++.+++.+||+++||++|||||++++++|++ +||+||+||++.+..|.++||..
T Consensus 301 GIA~Nk~LAKlAs~~~KP~G~~vl~~~~~~v~~fL~~LPV~kl~GIG~~t~~~L~~-lGI~TigDL~~~~~~L~~~fG~~ 379 (517)
T 3pzp_A 301 GIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGIITCTELYQQRALLSLLFSET 379 (517)
T ss_dssp EEESSHHHHHHHHHTTCSSCEEECCSSHHHHHHHHTTCBGGGSTTCCHHHHHHHHH-TTCCBHHHHHHHHHHHHHHSCHH
T ss_pred EEcCCHHHHHHHhCcCCCCCEEEecCChHHHHHHHhcCChhhhccccHHHHHHHHH-hCCCcHHHHHhhHHHHHHHhChH
Confidence 99999999999999999999999998755789999999999999999999999997 99999999999888899999998
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCcceeecccCCcCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEecCCeeeEE
Q 009922 166 TADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 245 (522)
Q Consensus 166 ~~~~l~~~a~G~d~~~v~~~~~~KSIs~e~tF~~~~~~e~L~~~L~~La~~L~~RLr~~g~~artltLkL~~~d~~~~sr 245 (522)
.+.++++.|+|++.+++.+..++|||+.++||+.+.+.+++..+|..|+++|+.||+++++.+++|+|++++.+|.+.++
T Consensus 380 ~~~~l~~~a~Gid~~~v~~~~~~KSi~~e~tf~~~~~~e~l~~~l~~La~~l~~rLr~~~~~~~~vtlklk~~~f~~~tr 459 (517)
T 3pzp_A 380 SWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTR 459 (517)
T ss_dssp HHHHHHHHHTTCCCCSCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHTTTCCBSCEEEEEEETTSCEEEE
T ss_pred HHHHHHHHHcCCCcccccCCCCCccceeEEEcccccCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEecCCceeeE
Confidence 88889899999999999888889999999999988889999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhC------CCCEEEEEEEeecCCcCC
Q 009922 246 AVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDK 289 (522)
Q Consensus 246 s~~L~~pt~d~~~L~~~a~~LL~~~l------~~~IR~lGV~vs~L~~~~ 289 (522)
+++++.||+++..|+++|..||++.+ +.+||+|||++++|.+..
T Consensus 460 ~~tl~~~t~~~~~i~~~a~~Ll~~~~~~~~~~~~~iRllGV~~s~l~~~~ 509 (517)
T 3pzp_A 460 ASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEE 509 (517)
T ss_dssp CCCCSSCBCSHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEECCCCCCC
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEecCCcChh
Confidence 99999999999999999999998864 346999999999999874
No 2
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.2e-58 Score=495.92 Aligned_cols=286 Identities=27% Similarity=0.402 Sum_probs=271.6
Q ss_pred CcHHHHHHhCCCcEEECCChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHHHhC
Q 009922 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAG 80 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp~d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~etG 80 (522)
||+++|+++||+++++++||+.|.++|++++.|+.+|+|.||++||||+|||||++.++||.++.++|++||++|++++|
T Consensus 195 Mp~~~A~~lcP~livv~~d~~~Y~~~S~~i~~il~~~tp~VE~~SiDEafLDvtg~~~l~g~~~~~la~~Ir~~I~~~tG 274 (504)
T 3gqc_A 195 MFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKDQTK 274 (504)
T ss_dssp CBHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHTTCSCEEEEETTEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHhCCCcEEECCCHHHHHHHHHHHHHHHHHhCCeEEEecCCeEEEeccchHhhcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998876799999999999999999
Q ss_pred CceEEeccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHH
Q 009922 81 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC 159 (522)
Q Consensus 81 lt~S~GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~ 159 (522)
||||||||+||++||||++.+||+|+++|+++ ++.+||+++||++|||||++++++|++ +||+|++||+++| ..|.
T Consensus 275 lt~SvGIa~nk~LAKlAs~~~KP~G~~vl~~~--~~~~~L~~LPV~~l~GIG~~t~~kL~~-lGI~TigDLa~~~~~~L~ 351 (504)
T 3gqc_A 275 CAASVGIGSNILLARMATRKAKPDGQYHLKPE--EVDDFIRGQLVTNLPGVGHSMESKLAS-LGIKTCGDLQYMTMAKLQ 351 (504)
T ss_dssp CCEEEEEESSHHHHHHHHHHHCSSCEEECCGG--GHHHHHHHSBGGGSTTCCHHHHHHHHH-TTCCBHHHHTTSCHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHhhCccCCEEEECHH--HHHHHHhcCChhHhhCcCHHHHHHHHH-cCCCcHHHHHhccHHHHH
Confidence 99999999999999999999999999999886 689999999999999999999999997 9999999999998 8999
Q ss_pred HHcChhHHHHHHHhccCCCCCCCCCCCCCCcceeecccCC-cCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEec
Q 009922 160 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238 (522)
Q Consensus 160 ~~FG~~~~~~l~~~a~G~d~~~v~~~~~~KSIs~e~tF~~-~~~~e~L~~~L~~La~~L~~RLr~~g~~artltLkL~~~ 238 (522)
++||...+.+||..|+|+|.+++.+..++|||+++++|+. ..+.+++..+|..|+++|+.||+++++.+++|+|++++.
T Consensus 352 ~~fG~~~g~~L~~~a~GiD~~pV~~~~~~KSi~~e~tf~~d~~~~~~l~~~L~~La~~l~~rLr~~~~~~~~vtLkl~~r 431 (504)
T 3gqc_A 352 KEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVR 431 (504)
T ss_dssp HHHCHHHHHHHHHHTTTCCCCCCCCCCCCCCEEEEECSSCCCCSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred HhhChhHHHHHHHHhcCCCccccccccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEEe
Confidence 9999888999999999999999988888999999999998 689999999999999999999999999999999999864
Q ss_pred ---------CC------eeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC-C-CCEEEEEEEeecCCcCC
Q 009922 239 ---------SF------EVRTRAVTLQKYISSSEDILKHASVLLKAEL-P-VSLRLIGLRVTQFNEDK 289 (522)
Q Consensus 239 ---------d~------~~~srs~~L~~pt~d~~~L~~~a~~LL~~~l-~-~~IR~lGV~vs~L~~~~ 289 (522)
+| .+.+++++|+.||+++..|++.|..||++++ + .+||+|||++++|.+.+
T Consensus 432 ~~d~~~~t~~f~~~g~~~~~trs~tL~~pT~d~~~I~~~A~~Ll~~~~~~~~~vRllGV~~s~L~~~~ 499 (504)
T 3gqc_A 432 KPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLVPTN 499 (504)
T ss_dssp CTTSCSBCSSTTCCCSEEEEEEEEEEEEEECCHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEECC
T ss_pred cccccccccccccCCCcccceeEeecCCCcCCHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCcccCC
Confidence 23 5679999999999999999999999999975 3 68999999999999874
No 3
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=2e-58 Score=480.34 Aligned_cols=280 Identities=25% Similarity=0.383 Sum_probs=267.4
Q ss_pred CcHHHHHHhCCCcEEECCChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHHHhC
Q 009922 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAG 80 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp~d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~etG 80 (522)
||+++|+++||+++++++||+.|.++|++++.|+.+|+|.||++||||+|||||++.++|| ++.++|++||++|++++|
T Consensus 59 m~~~~A~~lcP~l~~~~~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~~~~-~~~~~a~~ir~~i~~~~G 137 (352)
T 1jx4_A 59 IPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYR-EAYNLGLEIKNKILEKEK 137 (352)
T ss_dssp SBHHHHHHHCTTSEEEECCHHHHHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCSSHH-HHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEeccCcccccc-cHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999888 899999999999999999
Q ss_pred CceEEeccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHH
Q 009922 81 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC 159 (522)
Q Consensus 81 lt~S~GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~ 159 (522)
+|||+|||+||++||||++.+||||+++++++ ++.+||+++||++|||||++++++|++ +||+|++||+++| ..|.
T Consensus 138 l~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~Gi~t~~dL~~~~~~~L~ 214 (352)
T 1jx4_A 138 ITVTVGISKNKVFAKIAADMAKPNGIKVIDDE--EVKRLIRELDIADVPGIGNITAEKLKK-LGINKLVDTLSIEFDKLK 214 (352)
T ss_dssp CCEEEEEESSHHHHHHHHHHHCSSCEEECCHH--HHHHHHHHSBGGGSTTCCHHHHHHHHT-TTCCBGGGGGSSCHHHHH
T ss_pred CcEEEEEcCCHHHHHHHhccCCCCCEEEECHH--HHHHHHHhCCCCcccccCHHHHHHHHH-cCCchHHHHHCCCHHHHH
Confidence 99999999999999999999999999999864 789999999999999999999999997 9999999999998 8999
Q ss_pred HHcChhHHHHHHHhccCCCCCCCCCCCCCCcceeecccCC-cCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEec
Q 009922 160 AVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 238 (522)
Q Consensus 160 ~~FG~~~~~~l~~~a~G~d~~~v~~~~~~KSIs~e~tF~~-~~~~e~L~~~L~~La~~L~~RLr~~g~~artltLkL~~~ 238 (522)
++||...+.++|+.++|+|.+++.+.. +|||+++++|+. +.+.+++..+|..|+++|+.||+++ .+++|+|+++++
T Consensus 215 ~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~~--~~~~v~l~l~~~ 291 (352)
T 1jx4_A 215 GMIGEAKAKYLISLARDEYNEPIRTRV-RKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKR--IPKAIHVVAVTE 291 (352)
T ss_dssp HHHCHHHHHHHHHHHTTCCCCCCCCCC-CCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHTTC--CEEEEEEEEEET
T ss_pred HhcChhHHHHHHHHhCCCCCCCccCCC-CceEEeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEEEEEC
Confidence 999988688889999999999998877 999999999998 6899999999999999999999998 999999999999
Q ss_pred CCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC---CCCEEEEEEEeecCCcC
Q 009922 239 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQFNED 288 (522)
Q Consensus 239 d~~~~srs~~L~~pt~d~~~L~~~a~~LL~~~l---~~~IR~lGV~vs~L~~~ 288 (522)
+|.+.+++++++.||+++..|++ +..+|++.+ +.+||++||++++|.+.
T Consensus 292 ~~~~~~~~~~l~~pt~~~~~l~~-a~~ll~~~~~~~~~~vr~lgv~~~~l~~~ 343 (352)
T 1jx4_A 292 DLDIVSRGRTFPHGISKETAYSE-SVKLLQKILEEDERKIRRIGVRFSKFIEA 343 (352)
T ss_dssp TSCEEEEEEECSSCCCHHHHHHH-HHHHHHHHHHHCCSCEEEEEEEEEEEC--
T ss_pred CCCcceeEEecCCCCCCHHHHHH-HHHHHHHHHhcCCCCEEEEEEEEeCCCCc
Confidence 99999999999999999999999 999999874 57999999999999764
No 4
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=2.1e-58 Score=496.06 Aligned_cols=288 Identities=50% Similarity=0.821 Sum_probs=258.8
Q ss_pred CcHHHHHHhCCCcEEECCChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchhh---------------------
Q 009922 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE--------------------- 59 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp~d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~l--------------------- 59 (522)
||+++|+++||+|+++++|++.|+.+|++++.|+.+|+|.||++||||+|||||++.++
T Consensus 85 m~~~~A~~lCP~lv~v~~d~~~Y~~~S~~i~~il~~~~p~ve~~SiDEafLDvT~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (459)
T 1t94_A 85 MPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVEN 164 (459)
T ss_dssp CCHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHHHCTTCEECSSSEEEEECHHHHHHHTTCCGGGSEEECCC---CCC
T ss_pred CcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCceEEeecceEEEECchhHHHhhccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999998654
Q ss_pred ------------------------------------------------------cCCCHHHHHHHHHHHHHHHhCCceEE
Q 009922 60 ------------------------------------------------------RGISGIEIAEELRTSVYEEAGLTCSA 85 (522)
Q Consensus 60 ------------------------------------------------------~g~~~~~lA~~IR~~I~~etGlt~S~ 85 (522)
||.++.++|++||++|++++||||||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~~~la~~IR~~I~~~~Glt~S~ 244 (459)
T 1t94_A 165 DNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASA 244 (459)
T ss_dssp CCCCGGGGGGSTTTTTTGGGCC----------------------CCCCCCCEEECCSSHHHHHHHHHHHHHHHHSCCEEE
T ss_pred ccccCcccccccccccccccccccccccccccccccccccccccccccccchhhccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 34368999999999999999999999
Q ss_pred eccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhchHHHHHHcChh
Q 009922 86 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHS 165 (522)
Q Consensus 86 GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~~~L~~~FG~~ 165 (522)
|||+||++|||||+.+||||+++++++..++.+||+++||++|||||++++++|++ +||+|++||++.+..|.++||..
T Consensus 245 GIa~nk~LAKlAs~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~~~~~~L~~-lGI~T~gdL~~~~~~L~~~fG~~ 323 (459)
T 1t94_A 245 GIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGIITCTELYQQRALLSLLFSET 323 (459)
T ss_dssp EEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHHHH-TTCCBHHHHHHTHHHHHHHSCHH
T ss_pred eecccHHHHHHHhhccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCHHHHHHHHH-cCCCcHHHHHhhHHHHHHHhChH
Confidence 99999999999999999999999998644789999999999999999999999997 99999999999888899999998
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCcceeecccCCcCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEecCCeeeEE
Q 009922 166 TADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 245 (522)
Q Consensus 166 ~~~~l~~~a~G~d~~~v~~~~~~KSIs~e~tF~~~~~~e~L~~~L~~La~~L~~RLr~~g~~artltLkL~~~d~~~~sr 245 (522)
.+.++|+.++|+|.+++.+..++|||+++++|+.+.+.+++..+|..|+++|+.||+++++.+++|+|++++.+|.+.++
T Consensus 324 ~~~~l~~~a~G~d~~~v~~~~~~kSi~~~~tf~~~~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~vtl~l~~~~~~~~sr 403 (459)
T 1t94_A 324 SWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTR 403 (459)
T ss_dssp HHHHHHHHHTTCCCSCC---C--CCEEEEEEEEEECCHHHHHHHHHHHHSSTTCCCC---CCCSCEEEEEEETTCCEEEE
T ss_pred hHHHHHHHHcCCCCcccCCCCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEEEECCCceeeE
Confidence 89999999999999999888889999999999988899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhC------CCCEEEEEEEeecCCcCC
Q 009922 246 AVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDK 289 (522)
Q Consensus 246 s~~L~~pt~d~~~L~~~a~~LL~~~l------~~~IR~lGV~vs~L~~~~ 289 (522)
+++++.|+++...|++.+..+|++.+ +.+||+|||++++|.+..
T Consensus 404 s~~l~~~t~~~~~i~~~a~~ll~~~~~~~~~~~~~ir~lGv~~~~l~~~~ 453 (459)
T 1t94_A 404 ASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEE 453 (459)
T ss_dssp CC-CCCCCCC--CHHHHHHHHHHHHHSSSTTSCCCEEEEEEEECC-----
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEEccCcCcc
Confidence 99999999999999999999999874 346999999999999864
No 5
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=4.4e-58 Score=478.04 Aligned_cols=279 Identities=25% Similarity=0.369 Sum_probs=267.4
Q ss_pred CcHHHHHHhCCCcEEECCChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchh-hcCCCHHHHHHHHHHHHHHHh
Q 009922 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEA 79 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp~d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~-l~g~~~~~lA~~IR~~I~~et 79 (522)
||+++|+++||+++++++||+.|.++|++++.|+.+|+|.||++||||+|||||++.+ +|| ++.++|++||++|++++
T Consensus 59 m~~~~A~~lcP~l~~~~~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~~~~~-~~~~la~~ir~~i~~~~ 137 (354)
T 3bq0_A 59 MPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFE-NGIELARKIKQEILEKE 137 (354)
T ss_dssp CBHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCCEEEecCCeeEEecCcchhhccC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 888 89999999999999999
Q ss_pred CCceEEeccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHH
Q 009922 80 GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLL 158 (522)
Q Consensus 80 Glt~S~GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L 158 (522)
|+|||+|||+||++||||++.+||||+++++++ ++.+||+++||++|||||++++++|++ +||+|++||+++| ..|
T Consensus 138 Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~Gi~t~~dL~~~~~~~L 214 (354)
T 3bq0_A 138 KITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LGIQKLRDILSKNYNEL 214 (354)
T ss_dssp CCCEEEEEESSHHHHHHHHHTTCSSCEEECCGG--GHHHHHHHCBSTTSTTCCHHHHHHHTT-TTCCBGGGGGGSCHHHH
T ss_pred CCcEEeeeccCHHHHHHHhccCCCCCEEEECHH--HHHHHHHhCCcccccCcCHHHHHHHHH-cCCccHHHHhcCCHHHH
Confidence 999999999999999999999999999999875 689999999999999999999999997 9999999999998 899
Q ss_pred HHHcChhHHHHHHHhccCCCCCCCCCCCCCCcceeecccCC-cCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEe
Q 009922 159 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237 (522)
Q Consensus 159 ~~~FG~~~~~~l~~~a~G~d~~~v~~~~~~KSIs~e~tF~~-~~~~e~L~~~L~~La~~L~~RLr~~g~~artltLkL~~ 237 (522)
.++||...+.++|+.++|+|.+++.+.. +|||+++++|+. +.+.+++..+|..|+++|+.||++ .+++|+|++++
T Consensus 215 ~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~---~~~~v~l~~~~ 290 (354)
T 3bq0_A 215 EKITGKAKALYLLKLAQNKYSEPVENKS-KIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG---IPMRITVIAIM 290 (354)
T ss_dssp HHHHCHHHHHHHHHHHTTCCCCCCCSEE-CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTTSS---EEEEEEEEEEE
T ss_pred HHHHCHHHHHHHHHHhCCCCCCCCcCCC-CceeEEeEeCCCCCCCHHHHHHHHHHHHHHHHHHHHh---hCCEEEEEEEe
Confidence 9999988688899999999999998777 999999999998 689999999999999999999998 99999999999
Q ss_pred cCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC-C-C-C-EEEEEEEeecCCcC
Q 009922 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-P-V-S-LRLIGLRVTQFNED 288 (522)
Q Consensus 238 ~d~~~~srs~~L~~pt~d~~~L~~~a~~LL~~~l-~-~-~-IR~lGV~vs~L~~~ 288 (522)
.+|...+++++++.||+++..|++ +..+|++.+ + . + ||.|||++++|.+.
T Consensus 291 ~~~~~~~~~~~l~~pt~~~~~i~~-~~~ll~~~~~~~~~~~vr~lgv~~~~l~~~ 344 (354)
T 3bq0_A 291 EDLDILSKGKKFKHGISIDNAYKV-AEDLLRELLVRDKRRNVRRIGVKLDNIIIN 344 (354)
T ss_dssp TTSCEEEEEEECSSCCCHHHHHHH-HHHHHHHHTTSCSSCCEEEEEEEEEEEECC
T ss_pred CCCCcceEEEECCCccCCHHHHHH-HHHHHHHHhccCCCCceEEEEEEEecCCCC
Confidence 999999999999999999999999 999999985 3 3 8 99999999999875
No 6
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=7.3e-58 Score=478.03 Aligned_cols=280 Identities=26% Similarity=0.377 Sum_probs=266.6
Q ss_pred CcHHHHHHhCCCcEEECCChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchh-hcCCCHHHHHHHHHHHHHHHh
Q 009922 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEA 79 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp~d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~-l~g~~~~~lA~~IR~~I~~et 79 (522)
||+++|+++||+++++++||+.|.++|++++.|+.+|+|.||++||||+|||||++.+ +|| ++.++|++||++|++++
T Consensus 59 m~~~~A~~lcP~l~~~~~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDEa~LDvt~~~~~~~~-~~~~~a~~ir~~I~~~~ 137 (362)
T 4f4y_A 59 MPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFE-NGIELARKIKQEILEKE 137 (362)
T ss_dssp CBHHHHHHHCTTSEEEECCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCCEEEecCceEEEecCCccccccC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888 787 79999999999999999
Q ss_pred CCceEEeccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHH
Q 009922 80 GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLL 158 (522)
Q Consensus 80 Glt~S~GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L 158 (522)
|+|||+|||+||++||||++.+||+|+++++++ ++.+||+++||++|||||++++++|++ +||+|++||+++| ..|
T Consensus 138 Gl~~svGIa~nk~lAKlAs~~~Kp~g~~~~~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~GI~Ti~dL~~~~~~~L 214 (362)
T 4f4y_A 138 KITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LGIQKLRDILSKNYNEL 214 (362)
T ss_dssp CCCCEEEEESSHHHHHHHHHTSCSSCEEECCTT--THHHHHHTCBSTTSTTCCSTTHHHHHH-TTCCBGGGGTTSCHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHhcccCCCEEEECHH--HHHHHHHhCChhhccCCCHHHHHHHHH-cCCChHHHHhcCCHHHH
Confidence 999999999999999999999999999999886 688999999999999999999999997 9999999999998 799
Q ss_pred HHHcChhHHHHHHHhccCCCCCCCCCCCCCCcceeecccCC-cCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEe
Q 009922 159 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237 (522)
Q Consensus 159 ~~~FG~~~~~~l~~~a~G~d~~~v~~~~~~KSIs~e~tF~~-~~~~e~L~~~L~~La~~L~~RLr~~g~~artltLkL~~ 237 (522)
.++||...+.++|..++|+|.+++.+..+ |||+++++|+. +.+.+++..+|.+|+++|+.||++ .+++|+|++++
T Consensus 215 ~~~fG~~~g~~l~~~a~G~d~~~v~~~~~-ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~---~~~~v~l~i~~ 290 (362)
T 4f4y_A 215 EKITGKAKALYLLKLAQDEYNEPIRTRVR-KSIGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG---IPMRITVIAIM 290 (362)
T ss_dssp HHHHCHHHHHHHHHHHTTCCCCCCCCCCC-CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCSS---EEEEEEEEEEE
T ss_pred HHHhChHHHHHHHHHhcCCCCCcCccCCC-cceEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh---CCCEEEEEEEE
Confidence 99999777899999999999999988777 99999999998 689999999999999999999998 99999999999
Q ss_pred cCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC---CCC-EEEEEEEeecCCcCC
Q 009922 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVS-LRLIGLRVTQFNEDK 289 (522)
Q Consensus 238 ~d~~~~srs~~L~~pt~d~~~L~~~a~~LL~~~l---~~~-IR~lGV~vs~L~~~~ 289 (522)
++|.+.+++++++.| +++..|++.+..+|++++ +.+ ||++||++++|.+..
T Consensus 291 ~~~~~~t~s~~l~~p-~d~~~i~~~a~~ll~~~~~~~~~~~vr~lGV~~~~L~~~~ 345 (362)
T 4f4y_A 291 EDLDILSKGKKFKHG-ISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIINK 345 (362)
T ss_dssp TTSCEEEEEEECSSC-CCHHHHHHHHHHHHHHHTTSSCSCCEEEEEEEEEEEEC--
T ss_pred CCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHHHhhcCCccEEEEEEEEeccccCC
Confidence 999999999999999 999999999999999987 357 999999999998763
No 7
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.1e-58 Score=480.83 Aligned_cols=283 Identities=27% Similarity=0.382 Sum_probs=170.5
Q ss_pred CcHHHHHHhCCCcEEECCChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHHHhC
Q 009922 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAG 80 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp~d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~etG 80 (522)
||+++|+++||+++++++||+.|.++|++++.|+.+|+|.||++||||+|||+|+.. ++ ++.++|++||++|++++|
T Consensus 61 m~~~~A~~lcP~l~~~~~~~~~Y~~~s~~v~~il~~~~p~ve~~SiDEafld~t~~~--~~-~~~~~a~~ir~~i~~~~g 137 (356)
T 4dez_A 61 MPLRAAARRCPDATFLPSDPAAYDEASEQVMGLLRDLGHPLEVWGWDEAYLGADLPD--ES-DPVEVAERIRTVVAAETG 137 (356)
T ss_dssp SBHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHHHTTSSCEEEETTTEEEEEEECCT--TC-CHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHhCCCeEEECCcHHHHHHHHHHHHHHhhhcCCceeecCcchhheeccccc--CC-CHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999999874 33 789999999999999999
Q ss_pred CceEEeccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHH
Q 009922 81 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC 159 (522)
Q Consensus 81 lt~S~GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~ 159 (522)
+|||||||+||++||||++.+||+|+++++++ ++.+||+++||++|||||++++++|++ +||+|++||+++| ..|.
T Consensus 138 l~~siGIa~nk~lAKlAs~~~Kp~g~~~i~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~GI~Ti~dL~~~~~~~L~ 214 (356)
T 4dez_A 138 LSCSVGISDNKQRAKVATGFAKPAGIYVLTEA--NWMTVMGDRPPDALWGVGPKTTKKLAA-MGITTVADLAVTDPSVLT 214 (356)
T ss_dssp CCEEEEEESSHHHHHHHHHHHCSSCEEECCTT--THHHHHTTSCGGGSTTCCHHHHHHHHH-TTCCSHHHHHTSCHHHHH
T ss_pred CccccchhccHHHHHHHHHHhhhcCcccccch--hhhhhhhcCcHHHHcCCchhHHHHHHH-cCCCeecccccCCHHHHH
Confidence 99999999999999999999999999999987 578999999999999999999999997 9999999999998 8999
Q ss_pred HHcChhHHHHHHHhccCCCCCCCCCC-CCCCcceeecccCC-cCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEe
Q 009922 160 AVFSHSTADFFLSVGLGLGSTNTPQA-RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 237 (522)
Q Consensus 160 ~~FG~~~~~~l~~~a~G~d~~~v~~~-~~~KSIs~e~tF~~-~~~~e~L~~~L~~La~~L~~RLr~~g~~artltLkL~~ 237 (522)
++||...+.++|..++|+|.+++.+. ..+|||++++||+. +.+.+++..+|..|+++++.||+++++.+++|+|++++
T Consensus 215 ~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~la~~~~~rLr~~~~~~~~l~v~ir~ 294 (356)
T 4dez_A 215 TAFGPSTGLWLLLLAKGGGDTEVSSEPWVPRSRSHVVTFPQDLTERREMDSAVRDLALQTLAEIVEQGRIVTRVAVTVRT 294 (356)
T ss_dssp HHHCHHHHHHHHHHHTTCCCCCCCC-------------------------------------------------------
T ss_pred HHhCChHHHHHHHHHcCCCcccccccccccccccccccCCCcCCCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEe
Confidence 99998889999999999999988654 46899999999998 68899999999999999999999999999999999999
Q ss_pred cCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC-CCCEEEEEEEeecCCcCC
Q 009922 238 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRVTQFNEDK 289 (522)
Q Consensus 238 ~d~~~~srs~~L~~pt~d~~~L~~~a~~LL~~~l-~~~IR~lGV~vs~L~~~~ 289 (522)
++|.+.+++.+++.||+++..|++.+..+|++++ +.+||+|||++++|.++.
T Consensus 295 ~~f~~~t~~~~l~~pt~d~~~i~~~a~~ll~~~~~~~~vRliGV~ls~l~d~~ 347 (356)
T 4dez_A 295 STFYTRTKIRKLPAPSTDAGQIVDTALAVLDQFELDRPVRLLGVRLELAMDDV 347 (356)
T ss_dssp -----------------------------------------------------
T ss_pred CCCeEEEEEEECCcccCCHHHHHHHHHHHHHhccCCCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999875 468999999999998763
No 8
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=1.3e-56 Score=477.00 Aligned_cols=286 Identities=25% Similarity=0.372 Sum_probs=263.2
Q ss_pred CcHHHHHHhCCCcEEECC-ChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchh-------------------hc
Q 009922 1 MPGFIARKLCPELIFVPT-DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-------------------ER 60 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp~-d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~-------------------l~ 60 (522)
||+++|+++||+++++++ ||+.|+++|+++++|+.+|+|.||++||||+|||||++.. +|
T Consensus 79 m~~~~A~~lcP~lv~v~~~~~~~Y~~~S~~i~~il~~~tp~ve~~SiDE~fLDvt~~~~~~l~~~~~~~~~~~~~~g~l~ 158 (420)
T 3osn_A 79 MNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVY 158 (420)
T ss_dssp EEHHHHHHHCTTCEEEECCCCHHHHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSCSSSGGGCCCCSEEG
T ss_pred CcHHHHHHhCccccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEecCCEEEEECcccchhhccccccccccccccccccc
Confidence 899999999999999996 9999999999999999999999999999999999999863 34
Q ss_pred CCC--------------HHHHHHHHHHHHHHHhCCceEEeccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcCCC-c
Q 009922 61 GIS--------------GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP-I 125 (522)
Q Consensus 61 g~~--------------~~~lA~~IR~~I~~etGlt~S~GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LP-I 125 (522)
|.. +.++|++||++|++++|+|||+|||+||++||||++.+||+|++++.++ ++.+||+++| |
T Consensus 159 g~~~~~~~~~~~~~l~~~~~la~~Ir~~I~~~~Glt~svGIa~nk~LAKlAs~~~KP~g~~vl~~~--~~~~~L~~Lppv 236 (420)
T 3osn_A 159 NNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPE--SCQHLIHSLNHI 236 (420)
T ss_dssp GGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGG--GHHHHHHHCSSG
T ss_pred cccccccccchhhcchHHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHhhhhcCCCCeEEecHH--HHHHhhccCccH
Confidence 421 5799999999999999999999999999999999999999999999875 6899999997 9
Q ss_pred ccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcChhHHHHHHHhccCCCCCCCCCCCCCCcceeecccCCcCCHH
Q 009922 126 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA 204 (522)
Q Consensus 126 ~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG~~~~~~l~~~a~G~d~~~v~~~~~~KSIs~e~tF~~~~~~e 204 (522)
++|||||++++++|++ +||+|++||+++| ..|+++||...+.++|++++|+|.+++.+..++|||+++++|+.+.+.+
T Consensus 237 ~~l~GIG~~t~~~L~~-lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~V~~~~~~kSi~~e~tf~~~~~~~ 315 (420)
T 3osn_A 237 KEIPGIGYKTAKCLEA-LGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEV 315 (420)
T ss_dssp GGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSCSEEEEEEECSSCCCSS
T ss_pred HHccCCCHHHHHHHHH-hCCCcHHHHhhCCHHHHHHHhCchHHHHHHHHhcCCCccccCCCCCCCceeeeeeCCCCCCHH
Confidence 9999999999999997 9999999999998 8999999988899999999999999998888899999999998877889
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEEEEEEec----CCeeeEEEEEcCCC---------CCCHHHHHHHHHHHHHhhC
Q 009922 205 LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA----SFEVRTRAVTLQKY---------ISSSEDILKHASVLLKAEL 271 (522)
Q Consensus 205 ~L~~~L~~La~~L~~RLr~~g~~artltLkL~~~----d~~~~srs~~L~~p---------t~d~~~L~~~a~~LL~~~l 271 (522)
++..+|.+|+++|+.||+++++.+++|+|++++. +|.+.+++.+++.+ |+++.+|++.+..||++.+
T Consensus 316 ~~~~~l~~La~~l~~rLr~~~~~~~tv~l~ir~~~~~~~~~~~sr~~~l~~~~~~~l~~~~t~~~~~i~~~a~~Lf~~~~ 395 (420)
T 3osn_A 316 EAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMV 395 (420)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCSCEEEEEEEEEEECSSCCCCCEEEEEECCTTTCCC-----CTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccEEEEEEEeCCCCCCCceeEEEEECCCccccccccCCCchHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999953 46778999999986 7889999999999999986
Q ss_pred C--CC--EEEEEEEeecCCcCC
Q 009922 272 P--VS--LRLIGLRVTQFNEDK 289 (522)
Q Consensus 272 ~--~~--IR~lGV~vs~L~~~~ 289 (522)
+ .+ ||+|||++++|.+..
T Consensus 396 ~~~~~~~iRllgv~~~~l~~~~ 417 (420)
T 3osn_A 396 NVKMPFHLTLLSVCFCNLKALN 417 (420)
T ss_dssp CSSSCCEEEEEEEEEEEEC---
T ss_pred cccCCcceeEEEEEEeCcccCc
Confidence 3 34 999999999998753
No 9
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=3e-54 Score=460.70 Aligned_cols=285 Identities=19% Similarity=0.219 Sum_probs=258.4
Q ss_pred CcHHHHHHhCCC---cEEECCChHHHHHHHHHHHHHHHhh--CCCEEeecccEEEEE--cCcchhhcCCCHHHHHHHHHH
Q 009922 1 MPGFIARKLCPE---LIFVPTDFTKYTYYSDLTRKVFCKY--DPNFMAASLDEAYLD--ITEVCRERGISGIEIAEELRT 73 (522)
Q Consensus 1 Mpl~~A~kLCPd---Lvvvp~d~~~Y~~~s~~i~~il~~~--tp~VE~~SiDEafLD--vT~~~~l~g~~~~~lA~~IR~ 73 (522)
||+++|+++||+ ++++++||+.|+++|++++.|+.+| +|.||++||||+||| +|+..++++.++.++|++||+
T Consensus 112 m~~~~A~~lcP~~~~lvv~~~~~~~Y~~~S~~i~~il~~~~~t~~ve~~SiDEaflD~~vt~~~~~~~~~~~~la~~Ir~ 191 (434)
T 2aq4_A 112 MWVSQAEKMLPNGIKLISLPYTFEQFQLKSEAFYSTLKRLNIFNLILPISIDEAVCVRIIPDNIHNTNTLNARLCEEIRQ 191 (434)
T ss_dssp CBHHHHHTTCCTTCCCEEECCCHHHHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEEECC------CHHHHHHHHHHH
T ss_pred CcHHHHHHhCCCCCCEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEcCceeEEcCcCccchhhcCCCHHHHHHHHHH
Confidence 999999999999 9999999999999999999999997 689999999999999 999877642389999999999
Q ss_pred HHHHHh-CCceEEeccCChhHHHHHhhcCCCCcEEEEcCChHHH-HHhhcCCCcccccCCChHHHHHHhhh-cCCCCHHH
Q 009922 74 SVYEEA-GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV-MTFISSLPIRKIGGIGKVTEHILRDV-FGINTCEE 150 (522)
Q Consensus 74 ~I~~et-Glt~S~GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~-~~fL~~LPI~~LpGIG~kt~~~L~~~-lGI~T~gd 150 (522)
+|++++ |+|||||||+||++||||++.+||||+++++++ ++ .+||+++||++|||||++++++|++. +||+|++|
T Consensus 192 ~I~~~~gGlt~svGIa~nk~lAKlAs~~aKp~G~~~l~~~--~~~~~~l~~lpv~~l~GiG~~~~~~L~~~~~GI~ti~d 269 (434)
T 2aq4_A 192 EIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKS--NLSEEFWSSFKLDDLPGVGHSTLSRLESTFDSPHSLND 269 (434)
T ss_dssp HHHHHHSSCCEEEEEESSHHHHHHHHHHHCSSCEECCCGG--GCCHHHHTTCCGGGSTTCCHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHcCCCcEEEEecCCHHHHHHHHhcCCCCCEEEECCh--hhHHHHhhcCCcccccCcCHHHHHHHHHhcCCceEHHH
Confidence 999999 899999999999999999999999999999875 34 68999999999999999999999842 69999999
Q ss_pred HHhc-h-HHHHHHcChhHHHHHHHhccCCCCCCCC-----CC--CCCCcceeecccCC-cCCHHHHHHHHHHHHHHHHHH
Q 009922 151 MLQK-G-SLLCAVFSHSTADFFLSVGLGLGSTNTP-----QA--RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSAD 220 (522)
Q Consensus 151 L~~l-~-~~L~~~FG~~~~~~l~~~a~G~d~~~v~-----~~--~~~KSIs~e~tF~~-~~~~e~L~~~L~~La~~L~~R 220 (522)
|+++ | ..|.++||...+.++|..++|+|.+++. +. .++|||+++++|+. ..+.+++..+|..|+++|+.|
T Consensus 270 L~~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~r 349 (434)
T 2aq4_A 270 LRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQRKSLSIDINWGIRFKNITQVDLFIERGCQYLLEK 349 (434)
T ss_dssp HHHHCCHHHHHHHHCSSHHHHHHHHTTTCCCHHHHHHHHCHHHHHSCCCEEEEECSSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHhCHHHHHHHHHHhcCCCcccccccccCcccCCCCceeEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999 8 8999999987788999999999998874 22 47899999999997 689999999999999999999
Q ss_pred HHHhCCCccEEEEEEEec---------------CCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC--CCCEEEEEEEee
Q 009922 221 MQKEGLRGRTLTLKLKTA---------------SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVT 283 (522)
Q Consensus 221 Lr~~g~~artltLkL~~~---------------d~~~~srs~~L~~pt~d~~~L~~~a~~LL~~~l--~~~IR~lGV~vs 283 (522)
|+++++.+++|+|++++. +|.+.+++++++.||+++..|++.+..+|++++ +.+||+|||+++
T Consensus 350 Lr~~~~~~~~v~l~l~~r~~~~~~~~~ky~g~gd~~~~s~s~~l~~pt~~~~~i~~~a~~ll~~~~~~~~~vR~lgv~~s 429 (434)
T 2aq4_A 350 LNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNEFGIIATEMKSLYRTLGCPPMELRGLALQFN 429 (434)
T ss_dssp HHHTTEEEEEEEEEEEEECTTSCSSCSSTTCCCSEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHTCCGGGEEEEEEEEE
T ss_pred HHHcCCcceEEEEEEEEecCCCCcccccccCCCCcccceEEeecCCCcCCHHHHHHHHHHHHHHhcCCCCCEEEEEEEEe
Confidence 999999999999999842 356889999999999999999999999999985 369999999999
Q ss_pred cCCc
Q 009922 284 QFNE 287 (522)
Q Consensus 284 ~L~~ 287 (522)
+|.+
T Consensus 430 ~l~~ 433 (434)
T 2aq4_A 430 KLVD 433 (434)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 9864
No 10
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=7.5e-54 Score=457.67 Aligned_cols=281 Identities=26% Similarity=0.415 Sum_probs=257.6
Q ss_pred CcHHHHHHhCCCcEEEC-------CChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchh-----hcCCC-----
Q 009922 1 MPGFIARKLCPELIFVP-------TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-----ERGIS----- 63 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp-------~d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~-----l~g~~----- 63 (522)
||+++|+++||++++++ +|++.|+.+|+++++|+.+|+ .||++||||+|||||++.+ +||..
T Consensus 66 m~~~~A~~lcP~l~~~~~~~~~~~~~~~~Y~~~S~~i~~il~~~~-~vE~~SiDEafLDlT~~~~~~l~~l~g~~~~~~~ 144 (435)
T 4ecq_A 66 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADL 144 (435)
T ss_dssp CBHHHHHHHCTTCEEEECCEETTEECCHHHHHHHHHHHHHHHHHS-CEEEEETTEEEEECHHHHHHHHHHHTTCCCCGGG
T ss_pred CcHHHHHHhCCCeEEeccccccCCCCHHHHHHHHHHHHHHHHhcC-ceeecccceEEEECccchhhcchhcccccccccc
Confidence 89999999999999996 799999999999999999999 8999999999999999765 34310
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHhCCceEEeccCChh
Q 009922 64 ---------------------------------------------------GIEIAEELRTSVYEEAGLTCSAGVAPNRL 92 (522)
Q Consensus 64 ---------------------------------------------------~~~lA~~IR~~I~~etGlt~S~GIA~NKl 92 (522)
+..+|++||++|++++|+|||||||+||+
T Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~nk~ 224 (435)
T 4ecq_A 145 LPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKV 224 (435)
T ss_dssp CTTEEETTCSCCCC-----CSHHHHHHHHHHHHHHHCCTTCTTCHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEESSHH
T ss_pred ccccccccCCCcccccccccchhhhhcccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHhCCcEEEEecCCHH
Confidence 13689999999999999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEcCChHHHHHhhcCCCcccccCCChHHHHH-HhhhcCCCCHHHHHhch-HHHHHHcChhHHHHH
Q 009922 93 LAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHI-LRDVFGINTCEEMLQKG-SLLCAVFSHSTADFF 170 (522)
Q Consensus 93 lAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LPI~~LpGIG~kt~~~-L~~~lGI~T~gdL~~l~-~~L~~~FG~~~~~~l 170 (522)
+||||++.+||+|+++++++ .+.+||+++||++|||||+++.++ |++ +||+|++||+++| ..|+++||...+.+|
T Consensus 225 lAKlAs~~~Kp~g~~vv~~~--~~~~~L~~lpv~~l~GiG~~~~~~lL~~-lGI~TigdLa~~~~~~L~~~fG~~~g~~L 301 (435)
T 4ecq_A 225 LAKLACGLNKPNRQTLVSHG--SVPQLFSQMPIRKIRSLGGKLGASVIEI-LGIEYMGELTQFTESQLQSHFGEKNGSWL 301 (435)
T ss_dssp HHHHHHHHSCSSCEEECCGG--GHHHHHHTCBGGGSTTCSSHHHHHHHHH-HTCCBGGGGGGSCHHHHHHHHCHHHHHHH
T ss_pred HHHHHhccCCCCceEEEehh--HHHHHHhhCCHHHhcCCCHHHHHHHHHH-cCCCcHHHHhhCCHHHHHHHhCccHHHHH
Confidence 99999999999999999875 689999999999999999998776 787 9999999999998 899999997778999
Q ss_pred HHhccCCCCCCCCCCCCCCcceeecccCC---cCCHHHHHHHHHHHHHHHHHHHHHh----CCCccEEEEEEEecC---C
Q 009922 171 LSVGLGLGSTNTPQARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSADMQKE----GLRGRTLTLKLKTAS---F 240 (522)
Q Consensus 171 ~~~a~G~d~~~v~~~~~~KSIs~e~tF~~---~~~~e~L~~~L~~La~~L~~RLr~~----g~~artltLkL~~~d---~ 240 (522)
|..|+|+|.+++.+..++|||+++++|+. +.+.+++..+|..|+++|+.||+++ ++.+++|+|++++.+ +
T Consensus 302 ~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~~~~ 381 (435)
T 4ecq_A 302 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRL 381 (435)
T ss_dssp HHHTTTCCCCCCCCBCSCSCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTCCSS
T ss_pred HHHhhCCCCcccCCCCCCCeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCCCCC
Confidence 99999999999988888999999999997 4789999999999999999999997 899999999999976 4
Q ss_pred eeeEEEEEcCCCCCCHHHHHHHHHHHHHhhCC--------CCEEEEEEEeecCCc
Q 009922 241 EVRTRAVTLQKYISSSEDILKHASVLLKAELP--------VSLRLIGLRVTQFNE 287 (522)
Q Consensus 241 ~~~srs~~L~~pt~d~~~L~~~a~~LL~~~l~--------~~IR~lGV~vs~L~~ 287 (522)
.+.+|+.+++. +++..|...+..||++.+. .+||.|||++++|++
T Consensus 382 ~~~~R~~~l~~--~~~~~i~~~a~~L~~~~~~~~~~~~~~~pir~lgvs~s~f~~ 434 (435)
T 4ecq_A 382 SSLRRCCALTR--YDAHKMSHDAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSA 434 (435)
T ss_dssp CSEEEEEECCS--CCHHHHHHHHHHHHGGGCCCSSTTEEEEEEEEEEEEEEEEEE
T ss_pred ceeEEeccCCC--CCHHHHHHHHHHHHHHHhhccccccCCCCeeEEEEEEeeccc
Confidence 67899999965 6799999999999999872 479999999999975
No 11
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=1.4e-53 Score=463.65 Aligned_cols=286 Identities=20% Similarity=0.235 Sum_probs=261.0
Q ss_pred CcHHHHHHhCCCcEEE-----------------------------C-----CChHHHHHHHHHHHHHHHhhCCCEEeecc
Q 009922 1 MPGFIARKLCPELIFV-----------------------------P-----TDFTKYTYYSDLTRKVFCKYDPNFMAASL 46 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvv-----------------------------p-----~d~~~Y~~~s~~i~~il~~~tp~VE~~Si 46 (522)
||+++|+++||+++++ + ++++.|+++|++|+++|.+|+|.||++||
T Consensus 82 ~~~~~A~~~CP~l~~v~~~v~~~ge~~~~y~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~i~~il~~~~~~vE~~SI 161 (520)
T 3mfi_A 82 DTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALAIFKWACDLVERASI 161 (520)
T ss_dssp CBHHHHHTTCTTCEEEECEEEETTCSCEECCTTCSTTCSCTTSCCCTTSEEEECHHHHHHHHHHHHHHHHHCSCEEEEET
T ss_pred CcHHHHHHhCccceEeeeeeeecccccccccccccccccccccccCcccccCCHHHHHHHHHHHHHHHHHhCCCeEEecc
Confidence 8999999999999886 3 38999999999999999999999999999
Q ss_pred cEEEEEcCcchh--------------------------h----------------------------cC-----------
Q 009922 47 DEAYLDITEVCR--------------------------E----------------------------RG----------- 61 (522)
Q Consensus 47 DEafLDvT~~~~--------------------------l----------------------------~g----------- 61 (522)
||+|||||+... . |+
T Consensus 162 DEaflDlt~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 241 (520)
T 3mfi_A 162 DEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWD 241 (520)
T ss_dssp TEEEEECHHHHHHHHHHCSSCEEETTEEHHHHTHHHHHHHHHTCCCTTSEEECCCGGGGGCCCCSEECCTTCCCSCCSHH
T ss_pred ceEEEEcCcchhhccccccccccccccccccchhhhhhccccccccccccccccccchhccccccccccccccccccccc
Confidence 999999998641 0 11
Q ss_pred ----CCHHHHHHHHHHHHHHHhCCceEEeccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcC--CCcccccCCChHH
Q 009922 62 ----ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS--LPIRKIGGIGKVT 135 (522)
Q Consensus 62 ----~~~~~lA~~IR~~I~~etGlt~S~GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~--LPI~~LpGIG~kt 135 (522)
..+.++|++||++|+++||||||||||+||++|||||+.+||||+++|+++ .+.+||++ +||++|||||+++
T Consensus 242 ~~~~~~~~~ia~~IR~~I~~~tGlt~SvGIa~nK~LAKlAs~~~KP~G~~vi~~~--~~~~fL~~~~lPV~~l~GIG~~t 319 (520)
T 3mfi_A 242 DVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKND--CLLDFLDCGKFEITSFWTLGGVL 319 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTTSCSSEEEECCGG--GHHHHHTSSSCCGGGSTTCSSHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHhcccCCCCeEEcChH--HHHHHhhccCCcHHHhcCCCHHH
Confidence 026899999999999999999999999999999999999999999999875 68999998 9999999999999
Q ss_pred HHHHhhhc-CC---CCH-----------HHHHhch-HHHHHHcCh------------hHHHHHHHhccCCCCCCCCCCCC
Q 009922 136 EHILRDVF-GI---NTC-----------EEMLQKG-SLLCAVFSH------------STADFFLSVGLGLGSTNTPQARF 187 (522)
Q Consensus 136 ~~~L~~~l-GI---~T~-----------gdL~~l~-~~L~~~FG~------------~~~~~l~~~a~G~d~~~v~~~~~ 187 (522)
+++|++ + || +|+ +||++++ ..|.++||. ..+.++|..++|+|.+++.+.++
T Consensus 320 ~~~L~~-llGI~~~~ti~~i~~l~~~t~~dL~~~~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~arGid~~~V~~~~~ 398 (520)
T 3mfi_A 320 GKELID-VLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPV 398 (520)
T ss_dssp HHHHHH-HTTCCSSSHHHHHHHHSCSCHHHHHHHHHHHHHSTTCC---CCCCTTCHHHHHHHHHHHTTTCCCCCCCCCCS
T ss_pred HHHHHH-hcCCCcccchhhhhhccCCCHHHHHhcCHHHHHHhcCccccccccchhhhHHHHHHHHHhCCCCCCCCCCCCC
Confidence 999997 7 99 665 7887777 789999995 67899999999999999988889
Q ss_pred CCcceeecccCC--cCCHHHHHHHHHHHHHHHHHHHHHhC------CCccEEEEEEEecCCeeeEEEEEcCCCC--CCHH
Q 009922 188 RKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQKEG------LRGRTLTLKLKTASFEVRTRAVTLQKYI--SSSE 257 (522)
Q Consensus 188 ~KSIs~e~tF~~--~~~~e~L~~~L~~La~~L~~RLr~~g------~~artltLkL~~~d~~~~srs~~L~~pt--~d~~ 257 (522)
+|||+++++|+. +.+.+++..+|..|+++|+.||++.+ +.+++|+|++++++|.+.+++++++.|| +++.
T Consensus 399 ~KSi~~~~tf~~~~i~~~~~l~~~L~~la~~l~~rLr~~~~~~~~~~~~rtvtl~ir~~df~~~trs~~l~~pt~~~~~~ 478 (520)
T 3mfi_A 399 VKSMMSNKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSH 478 (520)
T ss_dssp CSCEEEEEECCTTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEECTTCCEEEEEEECCCCCGGGHHH
T ss_pred CCceeeEEEcCCCCcCCHHHHHHHHHHHHHHHHHHHHhcccccccceeeeEEEEEEEeCCCCcceEEEECCCCCccCCHH
Confidence 999999999997 47999999999999999999999984 9999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhhC-------CCCEEEEEEEeecCCcCC
Q 009922 258 DILKHASVLLKAEL-------PVSLRLIGLRVTQFNEDK 289 (522)
Q Consensus 258 ~L~~~a~~LL~~~l-------~~~IR~lGV~vs~L~~~~ 289 (522)
.|+++|..||++++ ..+||+|||++++|...+
T Consensus 479 ~I~~~a~~Ll~~~~~~~~~~~~~~iRliGV~~s~Le~~~ 517 (520)
T 3mfi_A 479 ELLKVGIKFVTDLDIKGKNKSYYPLTKLSMTITNFDIID 517 (520)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCSSCSEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhhcccccCCceeEEEEEEeCCEecC
Confidence 99999999999875 268999999999998753
No 12
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=100.00 E-value=5.6e-40 Score=321.02 Aligned_cols=155 Identities=35% Similarity=0.561 Sum_probs=142.4
Q ss_pred CcHHHHHHhCCCcEEECCChHHHHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchh-hcCCCHHHHHHHHHHHHHHHh
Q 009922 1 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEA 79 (522)
Q Consensus 1 Mpl~~A~kLCPdLvvvp~d~~~Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~-l~g~~~~~lA~~IR~~I~~et 79 (522)
||+++|+++||+++++++||+.|.++|++++.|+.+|+|.||++||||+|||+|++.+ +|| ++.++|++||++|++++
T Consensus 64 m~~~~A~~lcP~l~v~~~~~~~Y~~~s~~i~~~l~~~tp~ve~~siDE~~lDvt~~~~~l~~-~~~~la~~ir~~i~~~~ 142 (221)
T 1im4_A 64 MPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFE-NGIELARKIKQEILEKE 142 (221)
T ss_dssp CBHHHHHHHCTTSEEEECCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCceEEecCCeEEEEecchhhhccC-CHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999998 888 89999999999999999
Q ss_pred CCceEEeccCChhHHHHHhhcCCCCcEEEEcCChHHHHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHH
Q 009922 80 GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLL 158 (522)
Q Consensus 80 Glt~S~GIA~NKllAKLAS~~~KP~G~~vI~~~~~~~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L 158 (522)
|+|||+|||+||++||||++.+||+|+++++++ ++.+||+++||++|||||+++.++|++ +||+|++||+++| ..|
T Consensus 143 Gl~~svGia~nk~lAKlas~~~Kp~g~~~~~~~--~~~~~L~~lpv~~l~giG~~~~~~L~~-~Gi~TigdL~~~~~~~L 219 (221)
T 1im4_A 143 KITVTVGVAPNKILAKIIADKSKPNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LGIQKLRDILSKNYNEL 219 (221)
T ss_dssp CCCEEEEEESSHHHHHHHHHHTCSSCEEECCGG--GHHHHHHTCBGGGSTTCCHHHHHHHHH-TTCCBTTC---------
T ss_pred CCeEEEEeCCCHHHHHHHHhhcCCCCEEEECHH--HHHHHHHhCCcccccCCCHHHHHHHHH-cCCCcHHHHHCCCHHHh
Confidence 999999999999999999999999999999875 689999999999999999999999997 9999999999988 444
Q ss_pred H
Q 009922 159 C 159 (522)
Q Consensus 159 ~ 159 (522)
+
T Consensus 220 ~ 220 (221)
T 1im4_A 220 E 220 (221)
T ss_dssp -
T ss_pred h
Confidence 3
No 13
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=99.46 E-value=3.7e-13 Score=117.80 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=90.4
Q ss_pred CcceeecccCC-cCCHHHHHHHHHHHHHHHHHHHHHhCCCccEEE---EEEEecCCeeeEEEEEcCCCCCCHHHHHHHHH
Q 009922 189 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT---LKLKTASFEVRTRAVTLQKYISSSEDILKHAS 264 (522)
Q Consensus 189 KSIs~e~tF~~-~~~~e~L~~~L~~La~~L~~RLr~~g~~artlt---LkL~~~d~~~~srs~~L~~pt~d~~~L~~~a~ 264 (522)
..+|+|.||+. +.+.+++...|..|+++++.||++.+ .+++|+ |++++++|.+.+++.+ .|++++..|++.|.
T Consensus 5 ~~~g~e~Tf~~d~~~~~~l~~~l~~l~~~v~~rLr~~~-~~~tV~k~~vkir~~dF~~~trs~t--~pt~~~~~i~~~a~ 81 (115)
T 1unn_C 5 HHVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK-PDLLIARQGVKLKFDDFQQTTQEHV--WPRLNKADLIATAR 81 (115)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC-TTCBCSEEEEEEEETTSCEEEEEEE--CSBCCHHHHHHHHH
T ss_pred CCCccceECCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEEeEEEEEECCCCeEEeccc--cCcCCHHHHHHHHH
Confidence 46799999998 58999999999999999999999999 999999 9999999999999988 69999999999999
Q ss_pred HHHHhhCC-CCEEEEEEEeecCCcC
Q 009922 265 VLLKAELP-VSLRLIGLRVTQFNED 288 (522)
Q Consensus 265 ~LL~~~l~-~~IR~lGV~vs~L~~~ 288 (522)
.||++.++ .+||++||++++|.+.
T Consensus 82 ~Ll~~~~~~~~vRllGV~ls~L~~~ 106 (115)
T 1unn_C 82 KTWDERRGGRGVRLVGLHVTLLDPQ 106 (115)
T ss_dssp HHHHHHCTTCCEEEEEEEEECCCCC
T ss_pred HHHHhhhcCCCEEEEEEEEeCCCCC
Confidence 99998764 6899999999999765
No 14
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=98.83 E-value=3.5e-10 Score=79.93 Aligned_cols=36 Identities=36% Similarity=0.600 Sum_probs=31.2
Q ss_pred ceeecCccccccccCCCCCcHhhhhccccchHHHHhhhh
Q 009922 429 FIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 467 (522)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (522)
+.|.+.|.|+.||..+|. .++|||.|||+|..||+.
T Consensus 4 ~~~~~~~~C~~C~~~i~~---~~~~EH~D~H~A~~Lq~s 39 (39)
T 2i5o_A 4 MAAEDQVPCEKCGSLVPV---WDMPEHMDYHFALELQKS 39 (39)
T ss_dssp --CCCEEECTTTCCEEEG---GGHHHHHHHHHHHHHTTC
T ss_pred CCcCCCcccccccCcCCc---ccccchhhHHHHHHHhcC
Confidence 567889999999999995 689999999999999973
No 15
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.64 E-value=0.0084 Score=47.54 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=41.0
Q ss_pred CcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcC--hhHHHHHHHhcc
Q 009922 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVGL 175 (522)
Q Consensus 124 PI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG--~~~~~~l~~~a~ 175 (522)
+|.+|+|||+.++.+|.+ .||+|+.+|+..+ ..|....| ...+..+...|+
T Consensus 8 ~l~~L~Gi~~~~~~kL~e-~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAA-RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp HHHSSTTCCHHHHHHHHT-TTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 466788999999999997 9999999999987 78888776 455666655554
No 16
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.79 E-value=0.032 Score=46.65 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=28.7
Q ss_pred CcccccCCChHHHHHHhhhcCCCCHHHHHhch
Q 009922 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 155 (522)
Q Consensus 124 PI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~ 155 (522)
.|++||+||+++++.|.+ .||.|+.||..+.
T Consensus 5 ~L~dLPNig~~~e~~L~~-~GI~t~~~Lr~~G 35 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIK-AGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHH-TTCCSHHHHHHHC
T ss_pred HHhhCCCCCHHHHHHHHH-cCCCCHHHHHhCC
Confidence 578999999999999997 9999999999874
No 17
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=94.45 E-value=0.031 Score=46.73 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=28.7
Q ss_pred CcccccCCChHHHHHHhhhcCCCCHHHHHhch
Q 009922 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 155 (522)
Q Consensus 124 PI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~ 155 (522)
-|++||+||+++++.|.+ .||+|+.||....
T Consensus 5 ~L~~LPNiG~~~e~~L~~-vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIK-AGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHH-TTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHH-cCCCCHHHHHhCC
Confidence 588999999999999997 9999999998874
No 18
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=93.74 E-value=0.076 Score=40.96 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=40.8
Q ss_pred cccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcChhH-HHHHHHhcc
Q 009922 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST-ADFFLSVGL 175 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG~~~-~~~l~~~a~ 175 (522)
+..|||||++..+.|-+ ...++.+|.+.+ ..|.+..|... +..+|....
T Consensus 6 L~~IpGIG~kr~~~LL~--~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp HHTSTTCCHHHHHHHHH--HCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 56799999999999875 455999999987 88899899988 888877553
No 19
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=92.83 E-value=0.095 Score=42.93 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=41.1
Q ss_pred cccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcChhH-HHHHHHhcc
Q 009922 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST-ADFFLSVGL 175 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG~~~-~~~l~~~a~ 175 (522)
+..|||||++..+.|-+ .+.++.+|.+.+ ..|.+..|... +..+|....
T Consensus 20 L~~IpGIG~kr~~~LL~--~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp HHTCSSCCHHHHHHHHH--HSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 56789999999999875 566999999988 88999999988 888887653
No 20
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=91.67 E-value=0.23 Score=39.61 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=41.5
Q ss_pred hcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHHH
Q 009922 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLS 172 (522)
Q Consensus 120 L~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~~ 172 (522)
+..+||..+ ++......-|++ .||+|++||.+.+ ..|.+. ||.+....+..
T Consensus 6 ~l~~~Ie~L-~LS~Ra~NcLkr-agI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 6 VLEMTIEEL-DLSVRSYNCLKR-AGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp HHTCBGGGS-CCBHHHHHHHHH-TTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred hhcCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence 345899999 899999999997 9999999999987 566544 89887665543
No 21
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=90.00 E-value=0.1 Score=45.14 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=41.8
Q ss_pred cCCCccccc--CCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHHHhcc
Q 009922 121 SSLPIRKIG--GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVGL 175 (522)
Q Consensus 121 ~~LPI~~Lp--GIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~~~a~ 175 (522)
.++||.+|+ |||+.++++|.+ .|+.|+.+|+..+ ..|.+. +|...+..+...++
T Consensus 21 ~~~~I~~L~~~GIg~~~i~kL~e-AG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 21 GPQPISRLEQCGINANDVKKLEE-AGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp SCCCHHHHHHTTCSHHHHHHHHT-TCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred CCccHHHHHhcCCCHHHHHHHHH-cCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 356899999 999999999997 9999999998876 667655 44555666655544
No 22
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=88.85 E-value=0.57 Score=38.51 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=40.7
Q ss_pred cCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHH--HHcChhHHHHHHH
Q 009922 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFLS 172 (522)
Q Consensus 121 ~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~--~~FG~~~~~~l~~ 172 (522)
-..||..+ +++.....-|++ .||+|++||.+.+ ..|. +-||++....+..
T Consensus 10 l~~~I~~L-~LSvRa~NcLkr-agI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 10 LLRPVDDL-ELTVRSANCLXA-EAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXD 62 (86)
T ss_dssp GGSBGGGG-CCCHHHHHHHHH-TTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHH
T ss_pred HhCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHhCCHHHHhhccccCcccHHHHHH
Confidence 46799999 899999999997 9999999999987 5554 3489887666543
No 23
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=88.23 E-value=0.38 Score=39.66 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=28.2
Q ss_pred hcCCCcccccCCChHHHHHHhhhcCCCCHHHHHh
Q 009922 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 153 (522)
Q Consensus 120 L~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~ 153 (522)
|..-||+++||||+.++++|.+ -|+....+|+.
T Consensus 15 mgeK~V~evpGIG~~~~~~L~~-~Gf~kAy~lLG 47 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKKLEE-RGFDKAYVVLG 47 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred CCCCCcccCCCcCHHHHHHHHH-cCccHHHHHHH
Confidence 3446899999999999999997 89999877754
No 24
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=87.47 E-value=0.47 Score=38.40 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=40.6
Q ss_pred hcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHH
Q 009922 120 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFL 171 (522)
Q Consensus 120 L~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~ 171 (522)
+-.+||.+| +++.....-|++ .||+|++||.+.+ ..|.+. ||++....+.
T Consensus 13 ~l~~~Ie~L-~LS~Ra~NcLk~-agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~ 65 (79)
T 3gfk_B 13 VLEMTIEEL-DLSVRSYNCLKR-AGINTVQELANKTEEDMMKVRNLGRKSLEEVK 65 (79)
T ss_dssp GGGCBGGGS-CCBHHHHHHHHH-TTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHH
T ss_pred HhcCcHHHh-CCCHHHHHHHHH-hCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHH
Confidence 457899999 899999999997 9999999999987 555533 8887665553
No 25
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=85.04 E-value=0.63 Score=36.89 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=35.8
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHH
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFL 171 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~ 171 (522)
...+..|||||++++++|-+.+| ++.++.+.+ ..|.+. +|...+..+.
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~ 73 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIF 73 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHH
Confidence 45688999999999999976455 788887765 667666 6666666554
No 26
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=84.91 E-value=0.73 Score=38.75 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=39.7
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHH
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFL 171 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~ 171 (522)
.+||..| ++..+...-|++ .||+|++||.+.+ ..|.+. ||++....+.
T Consensus 23 ~~~Ie~L-~LSvRs~NcLkr-agI~Tv~dL~~~se~dLlki~n~G~KSl~EI~ 73 (98)
T 1coo_A 23 LRPVDDL-ELTVRSANCLKA-EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 73 (98)
T ss_dssp HSBGGGG-TCCTTTHHHHHT-TTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHH
Confidence 3899999 899999999997 9999999999987 555544 8988765553
No 27
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=82.79 E-value=1.3 Score=36.10 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=36.5
Q ss_pred CcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHHHh
Q 009922 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 173 (522)
Q Consensus 124 PI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~~~ 173 (522)
.+..|||||++++++|-+.+| ++.++...+ ..|.+. +|...+..+...
T Consensus 33 ~L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~ 83 (91)
T 2a1j_B 33 CLTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDV 83 (91)
T ss_dssp HHTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHH
Confidence 466789999999999876455 788888776 677777 777777766544
No 28
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=82.66 E-value=1.4 Score=35.74 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=37.1
Q ss_pred CcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHHHhc
Q 009922 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVG 174 (522)
Q Consensus 124 PI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~~~a 174 (522)
.+..|||||++++++|-+.+| ++.++.+.+ ..|.+. +|...+..+....
T Consensus 20 ~L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 20 CLTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 366799999999999976455 788888776 677777 7877777665443
No 29
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=80.97 E-value=1.4 Score=42.38 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=40.5
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcCh-hHHHHHHHh
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH-STADFFLSV 173 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG~-~~~~~l~~~ 173 (522)
..++..|||||+++++.|.+.|| ++..|.+.+ ..|.+.+|. ..+..++++
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~~ 218 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLDI 218 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHHH
Confidence 35688999999999999987566 888888876 777777998 888777653
No 30
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.60 E-value=1.4 Score=44.94 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=35.3
Q ss_pred cCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcC
Q 009922 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 163 (522)
Q Consensus 121 ~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG 163 (522)
...+|.+||||++.++++|++ .|++|+.+++..+ ..|.+.-|
T Consensus 33 ~~~~l~~l~Gi~~~~~~kL~~-ag~~t~~~~~~~~~~~L~~~~~ 75 (349)
T 1pzn_A 33 IIRSIEDLPGVGPATAEKLRE-AGYDTLEAIAVASPIELKEVAG 75 (349)
T ss_dssp --CCSSCCTTCCHHHHHHHHT-TTCCSHHHHHTCCHHHHHHHHC
T ss_pred ccccHHHcCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHhhcC
Confidence 345899999999999999997 9999999999876 67776655
No 31
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=79.60 E-value=0.37 Score=47.03 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHH
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFL 171 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~ 171 (522)
...+..|||||++++..|-+ .|+.++.+|...+ ..|.+. ||...+..+.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~-~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~ 65 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLRE-AGFESVEDVRGADQSALADVSGIGNALAARIK 65 (241)
T ss_dssp -----------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHhccCCCHHHHHHHH
Confidence 35688899999999999987 5999999997665 667776 7777666654
No 32
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=77.89 E-value=1.4 Score=43.89 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=33.3
Q ss_pred CCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcC
Q 009922 123 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 163 (522)
Q Consensus 123 LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG 163 (522)
.+|.+|+||++.++++|++ .||.|+.+++..+ ..|.+.-|
T Consensus 3 ~~~~~l~gi~~~~~~kL~~-~gi~t~~~~~~~~~~~L~~~~g 43 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVE-AGYIDFMKIATATVGELTDIEG 43 (322)
T ss_dssp --CTTSTTCCHHHHHHHHH-HTCCSHHHHHTCCHHHHHTSTT
T ss_pred ccHhhcCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHhhC
Confidence 3688899999999999997 8999999999986 67776555
No 33
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=76.09 E-value=3 Score=33.86 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=36.6
Q ss_pred cCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcChh
Q 009922 121 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 165 (522)
Q Consensus 121 ~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG~~ 165 (522)
..+.++..||+...+.++|++ -||+|+.|+...+ ..|.+..|-.
T Consensus 2 ~~l~~~~~p~Lse~~~~~L~~-~~I~Tv~Dfl~~d~~eL~~~~~ls 46 (83)
T 2kz3_A 2 GVLRVGLCPGLTEEMIQLLRS-HRIKTVVDLVSADLEEVAQKCGLS 46 (83)
T ss_dssp CCCCTTSSTTCCHHHHHHHHH-TTCCCHHHHTTSCHHHHHHHHTCC
T ss_pred CccccccCCCCCHHHHHHHHH-CCCCCHHHHHhCCHHHHHHHhCCC
Confidence 345677779999999999997 9999999999987 6777776654
No 34
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=75.94 E-value=1.6 Score=48.37 Aligned_cols=49 Identities=14% Similarity=0.323 Sum_probs=41.1
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcChhHHHHHHH
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLS 172 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG~~~~~~l~~ 172 (522)
.+|+..|||||+..+++|.+ .|++|+.||+ .+ ..|.+.+|++.+..++.
T Consensus 656 ~~~L~qlp~i~~~rar~L~~-~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~ 705 (715)
T 2va8_A 656 LLELVQISGVGRKRARLLYN-NGIKELGDVV-MNPDKVKNLLGQKLGEKVVQ 705 (715)
T ss_dssp GHHHHTSTTCCHHHHHHHHH-TTCCSHHHHH-HCHHHHHHHHCHHHHHHHHH
T ss_pred hcchhhCCCCCHHHHHHHHH-cCCCCHHHHh-CCHHHHHHHhChhHHHHHHH
Confidence 36888999999999999997 8999999999 75 77888888666666554
No 35
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=75.92 E-value=1.4 Score=44.87 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=25.4
Q ss_pred cccccCCChHHHHHHhhhcCCCCHHHHHh
Q 009922 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQ 153 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~lGI~T~gdL~~ 153 (522)
+..|||||++++++|.+ -||+|+.||..
T Consensus 100 l~~V~GiGpk~a~~l~~-~Gi~tledL~~ 127 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVD-EGIKTLEDLRK 127 (335)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHT
T ss_pred HhCCCCCCHHHHHHHHH-cCCCCHHHHHH
Confidence 56799999999999998 59999999976
No 36
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=73.07 E-value=2.3 Score=46.98 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=44.0
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhchHHHHHHcChhHHHHHHHhcc
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 175 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~~~L~~~FG~~~~~~l~~~a~ 175 (522)
.+|+..|||||+..+++|.+ .|++|+.||++.+..|.+.+|++.+..+...+.
T Consensus 631 ~~~L~qlp~v~~~~ar~l~~-~g~~s~~~l~~~~~~l~~ll~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 631 LLELVRIRHIGRVRARKLYN-AGIRNAEDIVRHREKVASLIGRGIAERVVEGIS 683 (702)
T ss_dssp GHHHHTSTTCCHHHHHHHHT-TTCCSHHHHHHTHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHhhhcCCCCCHHHHHHHHH-cCCCCHHHHHhhhHHHHHHhChhHHHHHHHhcC
Confidence 36788999999999999997 899999999988777788888777776665444
No 37
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=72.95 E-value=1.9 Score=43.86 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=24.6
Q ss_pred ccccCCChHHHHHHhhhcCCCCHHHHHh
Q 009922 126 RKIGGIGKVTEHILRDVFGINTCEEMLQ 153 (522)
Q Consensus 126 ~~LpGIG~kt~~~L~~~lGI~T~gdL~~ 153 (522)
..|||||++++++|.+ .||+|+.||..
T Consensus 99 ~~v~GiG~k~a~~l~~-~Gi~tledL~~ 125 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQ-QGFRSLEDIRS 125 (335)
T ss_dssp HTSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred hcCCCcCHHHHHHHHH-cCCCCHHHHHH
Confidence 4799999999999997 69999999965
No 38
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=72.39 E-value=2 Score=33.66 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=23.6
Q ss_pred cccccCCChHHHHHHhhhcCCCCHHHHHhch
Q 009922 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG 155 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~ 155 (522)
+..|||||+++++++-+..+..++.||.+.+
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~ 59 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDLLKVK 59 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGGGGST
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHHHhCC
Confidence 4567999999999987656677777776553
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=72.11 E-value=1.1 Score=50.72 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=28.0
Q ss_pred CCcccccCCChHHHHHHhhhcCCCCHHHHHh
Q 009922 123 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 153 (522)
Q Consensus 123 LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~ 153 (522)
.||..|+|||+++++.|++ +||.|++||+.
T Consensus 115 ~~~~~l~gvg~~~~~~l~~-lgi~~~~dll~ 144 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLKK-LGIETLRDLLE 144 (780)
T ss_dssp CCSSSSSSCCHHHHHHHHT-TTCCSSGGGTS
T ss_pred CCchhcCCCCHHHHHHHHH-CCCCcHHHHHh
Confidence 4999999999999999997 99999999966
No 40
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=71.75 E-value=1.8 Score=44.50 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=25.2
Q ss_pred cccccCCChHHHHHHhhhcCCCCHHHHHh
Q 009922 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQ 153 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~lGI~T~gdL~~ 153 (522)
+..|||||++++++|-+ .||+|+.||..
T Consensus 104 l~~I~GvG~kta~~l~~-~Gi~tledL~~ 131 (360)
T 2ihm_A 104 FTQVFGVGVKTANRWYQ-EGLRTLDELRE 131 (360)
T ss_dssp HHTSTTCCHHHHHHHHH-TTCCSHHHHHT
T ss_pred HhCCCCCCHHHHHHHHH-cCCCCHHHHHh
Confidence 56799999999999997 59999999974
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=71.58 E-value=3.3 Score=45.95 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=42.2
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHHHhcc
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVGL 175 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~~~a~ 175 (522)
.+|+..|||||+..+++|.+ .|++|+.||++.+ ..+... +|......+...+.
T Consensus 645 ~~~L~qlp~v~~~rar~L~~-~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~ 700 (720)
T 2zj8_A 645 LIPLMQLPLVGRRRARALYN-SGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG 700 (720)
T ss_dssp GGGGTTSTTCCHHHHHHHHT-TTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC
T ss_pred chhhhhCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcc
Confidence 47899999999999999997 9999999999986 566655 67666555544444
No 42
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=71.52 E-value=2.5 Score=32.51 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=34.9
Q ss_pred CcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHHHh
Q 009922 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 173 (522)
Q Consensus 124 PI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~~~ 173 (522)
.+..+||||++++.+|-+.+ .++.+|...+ ..|.+. +|...+..++..
T Consensus 15 ~L~~i~giG~~~a~~Ll~~f--gs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLKHF--GSVERVFTASVAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHHH--CSHHHHHHCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhcCCCCCHHHHHHHHHH
Confidence 36789999999999997634 5688887765 666665 677766666543
No 43
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=70.44 E-value=2 Score=44.50 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.5
Q ss_pred CcccccCCChHHHHHHhhhcCCCCHHHHHh
Q 009922 124 PIRKIGGIGKVTEHILRDVFGINTCEEMLQ 153 (522)
Q Consensus 124 PI~~LpGIG~kt~~~L~~~lGI~T~gdL~~ 153 (522)
.+..|||||++++++|-+ .||+|+.||..
T Consensus 122 ~l~~I~GvGpk~a~~ly~-~Gi~tledL~~ 150 (381)
T 1jms_A 122 LFTSVFGVGLKTAEKWFR-MGFRTLSKIQS 150 (381)
T ss_dssp HHHTSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred HHHccCCCCHHHHHHHHH-cCCCcHHHHHh
Confidence 356799999999999987 59999999974
No 44
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=70.21 E-value=5.9 Score=39.98 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=39.3
Q ss_pred CCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcC--hhHHHHHHHhc
Q 009922 123 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVG 174 (522)
Q Consensus 123 LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG--~~~~~~l~~~a 174 (522)
.|+.-|||||+..+++|.+ .||.|+.||.+++ ..+...+| ...+..+...+
T Consensus 161 ~pL~Qlp~i~~~~~~~l~~-~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~ 214 (339)
T 2q0z_X 161 SYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQLTDSQIADVARFC 214 (339)
T ss_dssp CGGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CceecCCCCCHHHHHHHHh-cCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6899999999999999997 8999999999987 56666655 33344444443
No 45
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=70.21 E-value=3.9 Score=41.14 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=39.6
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcC--hhHHHHHHHhc
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVG 174 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG--~~~~~~l~~~a 174 (522)
..|+.-|||||+..+++|.+ .||.|+.||.+++ ..+.+.+| ...+..+...+
T Consensus 156 ~~pL~Qlp~i~~~~~~~l~~-~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~ 210 (328)
T 3im1_A 156 DNPLRQIPHFNNKILEKCKE-INVETVYDIMALEDEERDEILTLTDSQLAQVAAFV 210 (328)
T ss_dssp SCGGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCceeCCCCCCHHHHHHHHh-CCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHH
Confidence 36899999999999999997 8999999999986 66666554 33344444433
No 46
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=66.71 E-value=1.2 Score=44.66 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcC
Q 009922 123 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 163 (522)
Q Consensus 123 LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG 163 (522)
.||..||||++.+.++|++ .|+.|+.+++..+ ..|.+.-|
T Consensus 12 ~~~~~l~g~~~~~~~~l~~-~g~~t~~~~~~~~~~~l~~~~g 52 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIE-AGYSSLETLAVASPQDLSVAAG 52 (324)
T ss_dssp ------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHhhC
Confidence 4899999999999999997 9999999998876 55655544
No 47
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=58.70 E-value=17 Score=33.18 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhCC---CEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHHH--------hCCceEEeccC
Q 009922 26 YSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE--------AGLTCSAGVAP 89 (522)
Q Consensus 26 ~s~~i~~il~~~tp---~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~e--------tGlt~S~GIA~ 89 (522)
+...+.+.+..+.+ .|-.++-||+.+=+.+.... .+..++.+|++.|... ..+++|+||+.
T Consensus 59 vL~~va~~L~~~~~~~~~v~R~gGDEF~ill~~~~~~---~~~~~~~~i~~~i~~~~~~~~~~~~~vt~SiGia~ 130 (179)
T 3tvk_A 59 VLRTLATYLASWTRDYETVYRYGGEEFIIIVKAANDE---EACRAGVRICQLVDNHAITHSEGHINITVTAGVSR 130 (179)
T ss_dssp HHHHHHHHHHHTSCTTSCEEECSSSEEEEEEEESSHH---HHHHHHHHHHHHHHHSCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHhHhcCCcccEEEEccCCEEEEEcCCCCHH---HHHHHHHHHHHHHHcCCcccCCceEEEEEEEEEEe
Confidence 45566666766553 57778899977655443221 4567889999988542 26899999983
No 48
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=55.80 E-value=8.2 Score=40.08 Aligned_cols=46 Identities=26% Similarity=0.233 Sum_probs=37.8
Q ss_pred hhcCCCcccccC--CChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcChh
Q 009922 119 FISSLPIRKIGG--IGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 165 (522)
Q Consensus 119 fL~~LPI~~LpG--IG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG~~ 165 (522)
.-..+||.+|.+ |++.+.++|++ .|+.|+.+++..+ ..|.+..|-.
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~~-ag~~tv~~~~~~~~~~L~~~~gis 125 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLRE-SGLHTAEAVAYAPRKDLLEIKGIS 125 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHHH-TTCCBHHHHHHSCHHHHHTSTTCC
T ss_pred ccCccCHHHHHhCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHHhCCC
Confidence 345689999996 77999999997 9999999998876 6788776643
No 49
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=52.20 E-value=3 Score=40.19 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH-cChhHHHHHH
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV-FSHSTADFFL 171 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~-FG~~~~~~l~ 171 (522)
..++..|||||++++++|-+. ..|+..|.+.+ ..|.+. +|...+..++
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~--FGSl~~i~~As~eeL~~VGIG~~~A~~I~ 221 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY--FGSVKKMKEATVEELQRANIPRAVAEKIY 221 (226)
T ss_dssp ----------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH--hCCHHHHHhCCHHHHHHcCCCHHHHHHHH
Confidence 467899999999999999863 44677776655 567776 5555555554
No 50
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=50.75 E-value=9.4 Score=35.89 Aligned_cols=140 Identities=11% Similarity=0.134 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhhCCCEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHHHhCCceEEeccCC---hhHHHHHhh
Q 009922 23 YTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPN---RLLAKVCSD 99 (522)
Q Consensus 23 Y~~~s~~i~~il~~~tp~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~etGlt~S~GIA~N---KllAKLAS~ 99 (522)
|.++.+++.++.+.|.-.|-.+-.| ... ..+...+..+...|-... -..|+++=..=+.. .+++.|+..
T Consensus 65 ~~Rl~~Q~~~l~~~~~~~~lliE~d-----~~~--~~~~~~~~~i~~~l~~~~-~~~~~~vi~t~s~~eta~~l~~l~~~ 136 (219)
T 2bgw_A 65 DGRLFEQASRLAEHYETVFIIVEGP-----PVP--RRYRGRERSLYAAMAALQ-LDYGIRLMNTMDPKGTALVIESLARL 136 (219)
T ss_dssp HSHHHHHHHHHHHHCSEEEEEEESC-----SSC--GGGTTTHHHHHHHHHHHH-HHSCCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhcCCcEEEEEec-----Ccc--ccccCCHHHHHHHHHHHH-HHCCceEEEcCCHHHHHHHHHHHHHh
Confidence 3455566666665565322221111 111 123345666666665443 34577665543332 244555555
Q ss_pred cCCCC--cEEEEcC-ChHHHHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHHHh
Q 009922 100 INKPN--GQFVLPN-DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 173 (522)
Q Consensus 100 ~~KP~--G~~vI~~-~~~~~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~~~ 173 (522)
..+++ ++.+... ......+.+.. -+..|||||++++..|.+.+| ++.++.+.+ ..|.+. +|...+..++..
T Consensus 137 ~~~~~~~ai~~~~~~~~~~~~~~~~~-~L~~i~gVg~~~a~~Ll~~fg--s~~~l~~a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 137 STREGGQRIVIHKKPRLSDVREWQLY-ILQSFPGIGRRTAERILERFG--SLERFFTASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HSCBCCTTCCCCCCCCCCHHHHHHHH-HHHTSTTCCHHHHHHHHHHHS--SHHHHTTCCHHHHHHSTTCCHHHHHHHHHH
T ss_pred cccccccccccccccccccHHHHHHH-HHhcCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 44432 2221110 00121111111 256799999999999987444 688887765 677776 677777776543
No 51
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=46.71 E-value=19 Score=28.14 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=33.1
Q ss_pred ccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHH--cChhHHHHHHH
Q 009922 128 IGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLS 172 (522)
Q Consensus 128 LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~--FG~~~~~~l~~ 172 (522)
..||+...+++|.. -|++|+.+++-.| ..|... |+...+..+..
T Consensus 11 ~lgI~e~~a~~L~~-~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~ 57 (70)
T 1u9l_A 11 YLDIDEDFATVLVE-EGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 57 (70)
T ss_dssp HHTCCHHHHHHHHH-TTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHH-cCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHH
Confidence 34999999999997 8999999999887 566554 44444554443
No 52
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=44.16 E-value=5.8 Score=28.57 Aligned_cols=17 Identities=24% Similarity=0.999 Sum_probs=13.9
Q ss_pred CcceeecCccccccccCC
Q 009922 427 DQFIWLDDYKCSLCGTEM 444 (522)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~ 444 (522)
..++| .||+|..||.-.
T Consensus 21 ~~~l~-qG~~C~~C~~~~ 37 (52)
T 1faq_A 21 QKFLL-NGFRCQTCGYKF 37 (52)
T ss_dssp SSEEC-SEEECTTTTCCB
T ss_pred ccccc-cCCEeCCCCCeE
Confidence 45789 999999999653
No 53
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=43.06 E-value=7.7 Score=36.89 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=14.8
Q ss_pred cccccCCChHHHHHHh
Q 009922 125 IRKIGGIGKVTEHILR 140 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~ 140 (522)
+++|||||+|+++||.
T Consensus 28 l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHH
Confidence 6789999999999996
No 54
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=42.96 E-value=15 Score=40.68 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=38.6
Q ss_pred hhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHH--HcChhHHHHH
Q 009922 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFF 170 (522)
Q Consensus 119 fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~--~FG~~~~~~l 170 (522)
++.+-..-+|+|+|++++++|-+..+|+++.||..+. ..|.. .||.+.+..+
T Consensus 437 hf~sr~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nL 491 (667)
T 1dgs_A 437 HYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNL 491 (667)
T ss_dssp HHHSTTSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHH
T ss_pred HHhcccccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHH
Confidence 3445566689999999999997756789999998876 55554 4777655544
No 55
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=42.93 E-value=12 Score=40.61 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.9
Q ss_pred cccccCCChHHHHHHhhhcCCCCHHHHHh
Q 009922 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQ 153 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~lGI~T~gdL~~ 153 (522)
+..|||||++++.+|-+ .||.|+.||.+
T Consensus 99 L~~v~GVGpk~A~~i~~-~G~~s~edL~~ 126 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLWL-AGIDSLERLRE 126 (578)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred HhCCCCcCHHHHHHHHH-cCCCCHHHHHH
Confidence 46799999999999977 59999999976
No 56
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=40.47 E-value=18 Score=40.12 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=39.9
Q ss_pred hhcCCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHH--HcChhHHHHHH
Q 009922 119 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 171 (522)
Q Consensus 119 fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~--~FG~~~~~~l~ 171 (522)
++.+-..-+|+|+|+++.+.|-+..+|+++.||..+. ..|.. .||.+.+..++
T Consensus 442 hf~sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl 497 (671)
T 2owo_A 442 HFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVV 497 (671)
T ss_dssp HHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHH
T ss_pred HHhhhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHH
Confidence 3455667789999999999998755689999998886 45554 48887665543
No 57
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=40.37 E-value=5.9 Score=39.93 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=0.0
Q ss_pred CC-Cccccc--CCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcC
Q 009922 122 SL-PIRKIG--GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 163 (522)
Q Consensus 122 ~L-PI~~Lp--GIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG 163 (522)
++ ||..|+ ||++.+.++|++ .|+.|+.+++..+ ..|.+.-|
T Consensus 23 ~~~~~~~l~~~g~~~~~~~~l~~-~g~~t~~~~~~~~~~~l~~~~~ 67 (343)
T 1v5w_A 23 LFQDIDLLQKHGINVADIKKLKS-VGICTIKGIQMTTRRALCNVKG 67 (343)
T ss_dssp ----------------------------------------------
T ss_pred ccCcHHHHhhCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHhhC
Confidence 44 899999 999999999997 9999999998876 55555544
No 58
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=38.91 E-value=12 Score=31.09 Aligned_cols=31 Identities=10% Similarity=0.121 Sum_probs=24.6
Q ss_pred cccccCCChHHHHHHhhhcCCCCHHHHHhch
Q 009922 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG 155 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~ 155 (522)
+..|||||+++++++-..=++.++.||.+.+
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL~~V~ 58 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDVLNIP 58 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGGGGCT
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHHHhcc
Confidence 6678999999999987623578888887764
No 59
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=38.86 E-value=60 Score=28.08 Aligned_cols=61 Identities=20% Similarity=0.085 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhCC---CEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHH--------HhCCceEEeccC
Q 009922 26 YSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE--------EAGLTCSAGVAP 89 (522)
Q Consensus 26 ~s~~i~~il~~~tp---~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~--------etGlt~S~GIA~ 89 (522)
+...+.+.+..+.+ .+-.++-||+.+=+.+... . ....++++|++.+.. ...+++|+||+.
T Consensus 65 ~L~~ia~~L~~~~~~~~~~~R~~~d~F~ill~~~~~-~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 136 (177)
T 3ign_A 65 VIRHTADVTRNNIRQSDSAGRYGGEEFGIILPETDA-E--SARVICERIREAIEKSTVSTSAGDIQYTVSMGIAQ 136 (177)
T ss_dssp HHHHHHHHHHTTSCTTSEEEECSSSEEEEEEETCCH-H--HHHHHHHHHHHHHHTCCEECSSCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCeEEEEeCCCCH-H--HHHHHHHHHHHHHHhcCcccCCCceeEEEEEEEEe
Confidence 34555666666543 4566888887665544321 1 467889999999865 235789999983
No 60
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=37.92 E-value=10 Score=36.37 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.6
Q ss_pred cccccCCChHHHHHHh
Q 009922 125 IRKIGGIGKVTEHILR 140 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~ 140 (522)
+++|||||+|+++||.
T Consensus 14 l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHH
Confidence 6789999999999997
No 61
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=37.72 E-value=16 Score=34.10 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=35.8
Q ss_pred CcccccCCChHHHHHHhhhcCCCCHHH-HHhch-HHHHHH--cChhHHHHHHHhccC
Q 009922 124 PIRKIGGIGKVTEHILRDVFGINTCEE-MLQKG-SLLCAV--FSHSTADFFLSVGLG 176 (522)
Q Consensus 124 PI~~LpGIG~kt~~~L~~~lGI~T~gd-L~~l~-~~L~~~--FG~~~~~~l~~~a~G 176 (522)
-+..++|||++++..|-+.+|..++-+ +.+-+ ..|.+. .|++.++.+.....+
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 456699999999999866577544433 33333 667777 788888877654443
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=35.69 E-value=18 Score=44.55 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=35.0
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHHHHcC
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 163 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~~~FG 163 (522)
..|+..|||||+..+++|.+ .||+|+.||++.. ..+...++
T Consensus 1556 ~~~L~qip~i~~~~ar~l~~-~gi~t~~dl~~~~~~~~~~ll~ 1597 (1724)
T 4f92_B 1556 DSYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQ 1597 (1724)
T ss_dssp SCGGGGSTTCCHHHHHHHHH-HTCCSHHHHHSSCHHHHTTSSC
T ss_pred CcCEecCCCCCHHHHHHHHH-CCCCCHHHHHhCCHHHHHHHHC
Confidence 36899999999999999997 8999999999986 55555554
No 63
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=35.42 E-value=16 Score=32.28 Aligned_cols=31 Identities=10% Similarity=0.121 Sum_probs=25.1
Q ss_pred cccccCCChHHHHHHhhhcCCCCHHHHHhch
Q 009922 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG 155 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~ 155 (522)
+..|||||++.++++-+.-...++.||.+.+
T Consensus 65 L~~LpGiGp~~A~~II~~GpF~svedL~~V~ 95 (134)
T 1s5l_U 65 FIQYRGLYPTLAKLIVKNAPYESVEDVLNIP 95 (134)
T ss_dssp GGGSTTCTHHHHHHHHHTCCCSSGGGGGGCT
T ss_pred HHHCCCCCHHHHHHHHHcCCCCCHHHHHhCC
Confidence 4569999999999987622488999998875
No 64
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=34.39 E-value=19 Score=39.04 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=23.9
Q ss_pred cccccCCChHHHHHHhhhcCCCCHHHHHh
Q 009922 125 IRKIGGIGKVTEHILRDVFGINTCEEMLQ 153 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~lGI~T~gdL~~ 153 (522)
+..+||||++++..+-..+|+.|+.||..
T Consensus 95 l~~v~GvGpk~A~~~~~~lg~~~~~~l~~ 123 (575)
T 3b0x_A 95 VMEVPGVGPKTARLLYEGLGIDSLEKLKA 123 (575)
T ss_dssp HHTSTTTCHHHHHHHHHTSCCCSHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHhcCCCCHHHHHH
Confidence 44689999999998754479999999865
No 65
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=33.92 E-value=69 Score=27.58 Aligned_cols=59 Identities=14% Similarity=-0.049 Sum_probs=38.0
Q ss_pred HHHHHHHHhhC---CCEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHH--------HhCCceEEeccC
Q 009922 28 DLTRKVFCKYD---PNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE--------EAGLTCSAGVAP 89 (522)
Q Consensus 28 ~~i~~il~~~t---p~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~--------etGlt~S~GIA~ 89 (522)
..+.+.+..+. ..+-.++-||+.+=+.+... . ....++++|+..+.+ ...+++|+||+.
T Consensus 72 ~~~a~~L~~~~~~~~~~~R~~~d~F~ill~~~~~-~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 141 (177)
T 3hva_A 72 GQLAGLMREQFGEEADLARFGDSIFAALFKGKTP-E--QAQAALQRLLKKVENHLFELNGRSAQATLSIGVAG 141 (177)
T ss_dssp HHHHHHHHHHHGGGCEEEECSSSEEEEEEETCCH-H--HHHHHHHHHHHHHHTCCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHhCCCCceEEEecCCeEEEEeCCCCH-H--HHHHHHHHHHHHHHhCccccCCceeeEEEEEEEEE
Confidence 44445555443 24666888987665544321 1 467889999999865 135899999984
No 66
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=33.83 E-value=18 Score=29.64 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=20.9
Q ss_pred cccccCCChHHHHHHhhhc----CCCCHHHHHhch
Q 009922 125 IRKIGGIGKVTEHILRDVF----GINTCEEMLQKG 155 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~l----GI~T~gdL~~l~ 155 (522)
+..|||||+++++++-+.. .+.++.||.+++
T Consensus 42 L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~ 76 (98)
T 2edu_A 42 LRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVE 76 (98)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGST
T ss_pred HHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCC
Confidence 5678899999988876523 355666665553
No 67
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=33.01 E-value=14 Score=21.11 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=9.7
Q ss_pred ccccccccCCCC
Q 009922 435 YKCSLCGTEMPP 446 (522)
Q Consensus 435 ~~~~~~~~~~~~ 446 (522)
|+|..||.....
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 899999987653
No 68
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=38.48 E-value=9.5 Score=22.40 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=14.4
Q ss_pred CccccccccCCCCCcHhhhhccccchH
Q 009922 434 DYKCSLCGTEMPPSFIEERQEHSDFHL 460 (522)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (522)
-|+|..||....-. ..-..|...|.
T Consensus 2 ~~~C~~C~k~f~~~--~~l~~H~~~H~ 26 (29)
T 2lvt_A 2 PCQCVMCGKAFTQA--SSLIAHVRQHT 26 (29)
Confidence 48999999865322 22234544443
No 69
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=31.82 E-value=41 Score=29.48 Aligned_cols=60 Identities=13% Similarity=0.006 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCC--CEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHH-------HhCCceEEeccC
Q 009922 27 SDLTRKVFCKYDP--NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE-------EAGLTCSAGVAP 89 (522)
Q Consensus 27 s~~i~~il~~~tp--~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~-------etGlt~S~GIA~ 89 (522)
...+.+.+....+ .+-.++-||+.+=+.+... . ....++++|++.+.+ ...+++|+||+.
T Consensus 57 L~~ia~~L~~~~~~~~v~R~~~deF~ill~~~~~--~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~siGi~~ 125 (176)
T 3hvw_A 57 MLEARDRIRAELPDFTLYKISPTRFGLLLPRQQQ--E-ETESVCLRLLRAFESPVVCRGIPIKANVGLGVLP 125 (176)
T ss_dssp HHHHHHHHHHHCTTSCEEEEETTEEEEEEEGGGG--G-GHHHHHHHHHHHTTSCEEETTEEECCCCEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEecCCEEEEEeCCCCH--H-HHHHHHHHHHHHHhCCcccCCEEEEEEEEEEEEe
Confidence 3445555555443 4566888998766655321 1 578899999998854 236889999984
No 70
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=30.87 E-value=19 Score=33.79 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=35.8
Q ss_pred HHHhhcCCCcccccCCChHHHHHHhhhcCCCCHHH-HHhch-HHHHHH--cChhHHHHHHH
Q 009922 116 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE-MLQKG-SLLCAV--FSHSTADFFLS 172 (522)
Q Consensus 116 ~~~fL~~LPI~~LpGIG~kt~~~L~~~lGI~T~gd-L~~l~-~~L~~~--FG~~~~~~l~~ 172 (522)
.++++. -+..++|||++++..|-+.+|..++-+ +.+-+ ..|.+. .|++.++.+..
T Consensus 68 ek~~f~--~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 68 ERTLFK--ELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHHH--HHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHH--HHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHH
Confidence 344444 456699999999998866577544433 33333 667777 67777776643
No 71
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=30.64 E-value=37 Score=34.63 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=34.7
Q ss_pred cccccCCChHHHHHHhhhc--C-CCCHHHHHh--chH---HHHHHc--ChhHHHHHHHhccCCCC
Q 009922 125 IRKIGGIGKVTEHILRDVF--G-INTCEEMLQ--KGS---LLCAVF--SHSTADFFLSVGLGLGS 179 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~l--G-I~T~gdL~~--l~~---~L~~~F--G~~~~~~l~~~a~G~d~ 179 (522)
+..|||||+++++++.+.+ | +..+.+|.. .|. .|.+.+ |++.+..||+. |+..
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~--Gi~t 125 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE--GLRT 125 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCS
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc--CCCC
Confidence 7899999999999987621 2 444555543 232 345554 56678777764 7654
No 72
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=30.40 E-value=24 Score=35.64 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=31.8
Q ss_pred cccccCCChHHHHHHhhhc--C-CCCHHHHHh-ch--HHHHHHc--ChhHHHHHHHhccCCCC
Q 009922 125 IRKIGGIGKVTEHILRDVF--G-INTCEEMLQ-KG--SLLCAVF--SHSTADFFLSVGLGLGS 179 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~l--G-I~T~gdL~~-l~--~~L~~~F--G~~~~~~l~~~a~G~d~ 179 (522)
+..|||||+++++++.+.+ | +..+.+|.. .| ..+.+.. |++.+..||+. |+..
T Consensus 59 l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~--Gi~t 119 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ--GFRS 119 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHT--TCCS
T ss_pred HhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHc--CCCC
Confidence 6789999999999987621 2 333344322 12 1222333 66778777764 7654
No 73
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=30.24 E-value=78 Score=26.01 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCHHHH---HHHHHHHHHHHhCCce-EEeccCC
Q 009922 62 ISGIEI---AEELRTSVYEEAGLTC-SAGVAPN 90 (522)
Q Consensus 62 ~~~~~l---A~~IR~~I~~etGlt~-S~GIA~N 90 (522)
.++.++ |-.++..|.+++|+.+ .+|||..
T Consensus 58 ~taadVa~~a~~~k~~Le~~~G~~Iv~aGVG~r 90 (91)
T 2qt7_A 58 LSLADVTQQAGLVKSELEAQTGLQILQTGVGQR 90 (91)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTSCEEEEEEECC
T ss_pred CCHHHHHHHHHHhHHHHHHhhCeEEEecccCCC
Confidence 345544 4456999999999988 9999863
No 74
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.32 E-value=13 Score=21.55 Aligned_cols=12 Identities=42% Similarity=1.201 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|+.||....
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 489999998654
No 75
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.84 E-value=13 Score=21.39 Aligned_cols=12 Identities=33% Similarity=0.839 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvh_A 3 PFSCSLCPQRSR 14 (27)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCcChhhC
Confidence 489999998654
No 76
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.36 E-value=10 Score=31.80 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=16.7
Q ss_pred CccccccccCCCCCcHhhhhcc
Q 009922 434 DYKCSLCGTEMPPSFIEERQEH 455 (522)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~ 455 (522)
|-.|.+||-++.|.+..+..++
T Consensus 47 g~~CPvCgs~l~~~~~~~~i~~ 68 (112)
T 1l8d_A 47 KGKCPVCGRELTDEHREELLSK 68 (112)
T ss_dssp SEECTTTCCEECHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHH
Confidence 6789999999998665554443
No 77
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.77 E-value=20 Score=27.76 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=12.6
Q ss_pred CccccccccCCCCC
Q 009922 434 DYKCSLCGTEMPPS 447 (522)
Q Consensus 434 ~~~~~~~~~~~~~~ 447 (522)
-.+|+-||.+++|+
T Consensus 4 ~~~C~Fcg~~IyPG 17 (66)
T 3j21_V 4 WNVCSYCGKPFEPG 17 (66)
T ss_dssp CCBCTTTCSBCCTT
T ss_pred eeEecCcCCcccCC
Confidence 36899999999998
No 78
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.85 E-value=18 Score=20.90 Aligned_cols=12 Identities=17% Similarity=0.819 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 489999998654
No 79
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=26.12 E-value=36 Score=37.19 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=36.1
Q ss_pred CCCcccccCCChHHHHHHhhhcC-CCCHHHHHhch-HHHHH--HcChhHHHHH
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFG-INTCEEMLQKG-SLLCA--VFSHSTADFF 170 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lG-I~T~gdL~~l~-~~L~~--~FG~~~~~~l 170 (522)
.-.--+|.|+|.++.++|-+ .| |+++.||..+. ..|.. .||.+.+..|
T Consensus 445 sr~amdI~GlG~~~i~~L~~-~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL 496 (586)
T 4glx_A 445 SRRAMDVDGMGDKIIDQLVE-KEYVHTPADLFKLTAGKLTGLERMGPKSAQNV 496 (586)
T ss_dssp STTTTCCTTCCHHHHHHHHH-TTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHH
T ss_pred ccccccCCCcCHHHHHHHHh-cCCCCCHHHHhCCCHHHHhcccCccHHHHHHH
Confidence 33445678999999999987 78 59999999886 55554 5888766544
No 80
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.99 E-value=14 Score=21.04 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 2 p~~C~~C~k~f~ 13 (26)
T 2lvu_A 2 PYVCERCGKRFV 13 (26)
Confidence 389999997554
No 81
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.93 E-value=21 Score=20.57 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=10.3
Q ss_pred CccccccccCCCC
Q 009922 434 DYKCSLCGTEMPP 446 (522)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (522)
-|+|..||.....
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 3899999987654
No 82
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=25.78 E-value=94 Score=31.63 Aligned_cols=61 Identities=16% Similarity=0.052 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhC---CCEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHH----------HhCCceEEeccC
Q 009922 26 YSDLTRKVFCKYD---PNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE----------EAGLTCSAGVAP 89 (522)
Q Consensus 26 ~s~~i~~il~~~t---p~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~----------etGlt~S~GIA~ 89 (522)
+...+.+.+.... ..+-.++-||+.+=+.+... . .+..++++|++.|.. ...+++|+||+.
T Consensus 345 ~L~~~a~~l~~~~~~~d~~~R~ggdeF~il~~~~~~-~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~t~siG~~~ 418 (459)
T 1w25_A 345 VLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTAL-A--DALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSA 418 (459)
T ss_dssp HHHHHHHHHHHTSCTTSEEEECSSSEEEEEETTCCH-H--HHHHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCcCEEEEEcCceEEEEeCCCCH-H--HHHHHHHHHHHHHHhCCccccCCCceeEEEEEEEEEe
Confidence 4445566666543 34667888998776665322 1 367899999998863 135899999974
No 83
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.72 E-value=15 Score=21.32 Aligned_cols=12 Identities=42% Similarity=1.184 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvg_A 3 PYRCPLCRAGCP 14 (27)
T ss_dssp TEEETTTTEEES
T ss_pred CcCCCCCCcccC
Confidence 489999998654
No 84
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.62 E-value=22 Score=20.71 Aligned_cols=12 Identities=33% Similarity=1.010 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (30)
T 1paa_A 2 AYACGLCNRAFT 13 (30)
T ss_dssp CSBCTTTCCBCS
T ss_pred CcCCcccCcccC
Confidence 489999998754
No 85
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=25.59 E-value=38 Score=34.83 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=34.3
Q ss_pred cccccCCChHHHHHHhhhc--C-CCCHHHHHh--chH---HHHHHc--ChhHHHHHHHhccCCCC
Q 009922 125 IRKIGGIGKVTEHILRDVF--G-INTCEEMLQ--KGS---LLCAVF--SHSTADFFLSVGLGLGS 179 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~l--G-I~T~gdL~~--l~~---~L~~~F--G~~~~~~l~~~a~G~d~ 179 (522)
+..|||||+++++++.+.+ | +..+.+|.. .|. .|.+.+ |++.+..||+. |+..
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~--Gi~t 144 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM--GFRT 144 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCS
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc--CCCc
Confidence 7899999999999988622 3 334555543 232 344554 56677777764 7654
No 86
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.54 E-value=19 Score=26.83 Aligned_cols=10 Identities=60% Similarity=1.524 Sum_probs=5.5
Q ss_pred cCcccccccc
Q 009922 433 DDYKCSLCGT 442 (522)
Q Consensus 433 ~~~~~~~~~~ 442 (522)
+|++|..||.
T Consensus 35 ~dw~CP~Cg~ 44 (54)
T 4rxn_A 35 DDWVCPLCGV 44 (54)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCcCCCC
Confidence 4455666654
No 87
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.47 E-value=17 Score=20.96 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 489999998654
No 88
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.15 E-value=15 Score=21.45 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.8
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 3 ~~~C~~C~k~f~ 14 (30)
T 2lvr_A 3 PYVCIHCQRQFA 14 (30)
Confidence 489999998654
No 89
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.12 E-value=23 Score=20.21 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.2
Q ss_pred CccccccccCCCC
Q 009922 434 DYKCSLCGTEMPP 446 (522)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (522)
-|+|..||.....
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 3899999987654
No 90
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.76 E-value=23 Score=21.83 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=9.9
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elr_A 9 THLCDMCGKKFK 20 (36)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeecCcCCCCcC
Confidence 599999998654
No 91
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=24.74 E-value=61 Score=32.64 Aligned_cols=53 Identities=25% Similarity=0.432 Sum_probs=33.4
Q ss_pred cccccCCChHHHHHHhhhc--C-CCCHHHHHhch--H---HHHHHc--ChhHHHHHHHhccCCCC
Q 009922 125 IRKIGGIGKVTEHILRDVF--G-INTCEEMLQKG--S---LLCAVF--SHSTADFFLSVGLGLGS 179 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~~l--G-I~T~gdL~~l~--~---~L~~~F--G~~~~~~l~~~a~G~d~ 179 (522)
+..|||||+++++++.+.+ | +..+.+|.+-+ . .|.+.+ |++.+..||+. |+..
T Consensus 59 l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~--Gi~t 121 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE--GIKT 121 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT--TCCS
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc--CCCC
Confidence 6789999999999988622 2 33344454422 2 344444 56677777764 7654
No 92
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=24.51 E-value=52 Score=30.97 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=29.6
Q ss_pred cccccCCChHHHHHHhh---hcCCCCHHHHHh-ch--HHHHHHcChhHHHHH
Q 009922 125 IRKIGGIGKVTEHILRD---VFGINTCEEMLQ-KG--SLLCAVFSHSTADFF 170 (522)
Q Consensus 125 I~~LpGIG~kt~~~L~~---~lGI~T~gdL~~-l~--~~L~~~FG~~~~~~l 170 (522)
+..|||||+++++++-+ .-...++.||.+ .+ ..-.+..|....+.+
T Consensus 134 L~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le~l 185 (205)
T 2i5h_A 134 LELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEI 185 (205)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHHHh
Confidence 56799999999888743 125889999965 44 123444555544333
No 93
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=23.93 E-value=1.1e+02 Score=33.90 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHHHHHhh-------CCCEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHHH-------hCCce
Q 009922 18 TDFTKYTYYSDLTRKVFCKY-------DPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE-------AGLTC 83 (522)
Q Consensus 18 ~d~~~Y~~~s~~i~~il~~~-------tp~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~e-------tGlt~ 83 (522)
..+.++...|+++...+..+ .-.+-.++-|++++=+... .+-++|.+||+.+.+. -++|+
T Consensus 459 ~TpsrhaaLSRaL~~Ff~~~V~~Ivk~~G~vIYaGGDDfL~llP~d------~AlelAe~LRe~F~~~~t~~~~~~~ITi 532 (693)
T 3ung_C 459 STPQVHVAISQALANFSIREVRSVVKDEGLLIYAGGDDVLAILPVD------KALEVAYKIRKEFGKSFENGSLLPGWKL 532 (693)
T ss_dssp -CHHHHHHHHHHHHHHHHTHHHHHHTTSSEEEEECSSEEEEEEEHH------HHHHHHHHHHHHHHTC---------CCE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEcCceEEEEeeHH------HHHHHHHHHHHHHHHHhccccCCCCceE
Confidence 34667777777776665432 2233446667777655421 4778999999998653 25799
Q ss_pred EEecc
Q 009922 84 SAGVA 88 (522)
Q Consensus 84 S~GIA 88 (522)
|+||+
T Consensus 533 SaGVA 537 (693)
T 3ung_C 533 SAGIL 537 (693)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99998
No 94
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.31 E-value=19 Score=21.97 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
.|+|..||....
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 499999998654
No 95
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=22.83 E-value=28 Score=26.94 Aligned_cols=13 Identities=38% Similarity=1.145 Sum_probs=12.2
Q ss_pred ccccccccCCCCC
Q 009922 435 YKCSLCGTEMPPS 447 (522)
Q Consensus 435 ~~~~~~~~~~~~~ 447 (522)
.+|+-||.+++|+
T Consensus 4 ~~C~Fcg~~IyPG 16 (66)
T 1vq8_U 4 RECDYCGTDIEPG 16 (66)
T ss_dssp CBCTTTCCBCCSS
T ss_pred eEecCcCCcccCC
Confidence 6899999999998
No 96
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=22.60 E-value=1.7e+02 Score=24.74 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCC---CEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHHH-------hCCceEEeccC
Q 009922 26 YSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE-------AGLTCSAGVAP 89 (522)
Q Consensus 26 ~s~~i~~il~~~tp---~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~e-------tGlt~S~GIA~ 89 (522)
+...+.+.+..+.+ .+-.++-||+.+=+.+..... ....++++|++.+... ..+++|+||+.
T Consensus 56 ~L~~~a~~L~~~~~~~~~~~R~~~d~F~ill~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~siGia~ 127 (171)
T 3icl_A 56 LLRATAERIRTAVRDGDTVARIGGDKFTILLNGAKDTL--NGALVAQKILDGLAQPFVFGAQQIVISVSIGIAV 127 (171)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEETTTEEEEEESSCTTST--TTHHHHHHHHHHHTSCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCEEEEEecCCCChH--HHHHHHHHHHHHhhCCEEECCEEEEEEEEEEEEE
Confidence 34455566665543 466788899877665432211 3567888888887542 25889999984
No 97
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.35 E-value=21 Score=20.63 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||...+
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 489999998654
No 98
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.17 E-value=21 Score=22.57 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=9.1
Q ss_pred CccccccccCC
Q 009922 434 DYKCSLCGTEM 444 (522)
Q Consensus 434 ~~~~~~~~~~~ 444 (522)
-|+|+.||...
T Consensus 9 ~~~C~~C~k~f 19 (37)
T 2elm_A 9 LYYCSQCHYSS 19 (37)
T ss_dssp EEECSSSSCEE
T ss_pred CeECCCCCccc
Confidence 49999999864
No 99
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.11 E-value=21 Score=21.91 Aligned_cols=12 Identities=17% Similarity=0.753 Sum_probs=9.6
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 1srk_A 7 PFVCRICLSAFT 18 (35)
T ss_dssp CEECSSSCCEES
T ss_pred CeeCCCCCcccC
Confidence 499999998653
No 100
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=21.93 E-value=24 Score=21.52 Aligned_cols=10 Identities=20% Similarity=0.850 Sum_probs=8.2
Q ss_pred CccccccccC
Q 009922 434 DYKCSLCGTE 443 (522)
Q Consensus 434 ~~~~~~~~~~ 443 (522)
-|+|..||..
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 3899999974
No 101
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.60 E-value=22 Score=22.06 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=9.5
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elv_A 9 LYDCHICERKFK 20 (36)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 489999997543
No 102
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.56 E-value=22 Score=20.50 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=9.4
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 389999997654
No 103
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.51 E-value=22 Score=22.04 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=10.2
Q ss_pred CccccccccCCCC
Q 009922 434 DYKCSLCGTEMPP 446 (522)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (522)
-|+|..||.....
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4899999987543
No 104
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.22 E-value=23 Score=21.86 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
-|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 599999998654
No 105
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=20.85 E-value=27 Score=38.71 Aligned_cols=13 Identities=38% Similarity=1.196 Sum_probs=9.8
Q ss_pred ecCccccccccCC
Q 009922 432 LDDYKCSLCGTEM 444 (522)
Q Consensus 432 ~~~~~~~~~~~~~ 444 (522)
.+||||+|||.-+
T Consensus 265 ~~g~kc~lcGE~~ 277 (693)
T 3ung_C 265 LKGWKCHVCGENL 277 (693)
T ss_dssp --CCBCSSSSSSB
T ss_pred cCCceeeccCccc
Confidence 4799999999764
No 106
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Probab=20.55 E-value=1.9e+02 Score=28.66 Aligned_cols=63 Identities=27% Similarity=0.136 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhCC---CEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHHH----hCCceEEecc
Q 009922 23 YTYYSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE----AGLTCSAGVA 88 (522)
Q Consensus 23 Y~~~s~~i~~il~~~tp---~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~e----tGlt~S~GIA 88 (522)
-..+...+.+.+....+ .+-.++-||+.+=+.+... . ....++++|++.+.+. ..+++|+||+
T Consensus 236 gD~lL~~va~~L~~~~~~~d~v~R~ggdeF~ill~~~~~-~--~~~~~~~~l~~~l~~~~~~~~~~~~siGva 305 (342)
T 3ezu_A 236 GDRILQLVAETITSHLRRSDVVGRYDGDEFVVYLSPVEP-A--SLRTVAENLRRSIEEESARMVPVTASIGVA 305 (342)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEECSSSEEEEEESSCCH-H--HHHHHHHHHHHHHHHHTTTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEEEcCCEEEEEECCCCH-H--HHHHHHHHHHHHHhcccCCccceEEEEEEE
Confidence 34566677777776653 4567888998776655432 1 4678899999998654 3678999998
No 107
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=20.44 E-value=74 Score=28.18 Aligned_cols=60 Identities=17% Similarity=0.022 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhC-C---CEEeecccEEEEEcCcchhhcCCCHHHHHHHHHHHHHHH----------hCCceEEecc
Q 009922 26 YSDLTRKVFCKYD-P---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE----------AGLTCSAGVA 88 (522)
Q Consensus 26 ~s~~i~~il~~~t-p---~VE~~SiDEafLDvT~~~~l~g~~~~~lA~~IR~~I~~e----------tGlt~S~GIA 88 (522)
+...+.+.+.... + .+-.++-||+.+=+.+... . ....++++|++.+... ..+++|+||+
T Consensus 87 ~L~~ia~~L~~~~~~~~~~~~R~~~d~F~il~~~~~~-~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~siGi~ 160 (206)
T 3i5c_A 87 ALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSP-G--GARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVS 160 (206)
T ss_dssp HHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEETCCH-H--HHHHHHHHHHHHHHHTCCEECSSSTTEECCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCeEEEEECCCCH-H--HHHHHHHHHHHHHHhcccccCCCCCCceEEEEEEEE
Confidence 3445666666543 2 3557888997765544321 1 3567888898888541 1378999997
No 108
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=20.31 E-value=22 Score=35.84 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=0.0
Q ss_pred CCCcccccCCChHHHHHHhhhcCCCCHHHHHhch-HHHH--HHcChhHHHHHH
Q 009922 122 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFL 171 (522)
Q Consensus 122 ~LPI~~LpGIG~kt~~~L~~~lGI~T~gdL~~l~-~~L~--~~FG~~~~~~l~ 171 (522)
.+||.+| .+.-+...=|++ .||+|++||.+.+ ..|. +-||.+..+.+.
T Consensus 253 ~~~i~~L-~LsvRs~NcLk~-a~I~ti~dL~~~se~~l~~~~n~G~kSl~Ei~ 303 (315)
T 2a6h_A 253 DLPLEEL-GLSTRVLHSLKE-EGIESVRALLALNLKDLKNIPGIGERSLEEIK 303 (315)
T ss_dssp -----------------------------------------------------
T ss_pred cCcHHHc-cCcHHHHHHHHH-cCCcCHHHHhhCCHHHHhcCCCCCcchHHHHH
Confidence 4899999 788888999997 8999999999987 4433 448888665543
No 109
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.05 E-value=25 Score=21.95 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=9.7
Q ss_pred CccccccccCCC
Q 009922 434 DYKCSLCGTEMP 445 (522)
Q Consensus 434 ~~~~~~~~~~~~ 445 (522)
.|+|..||....
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elp_A 9 AMKCPYCDFYFM 20 (37)
T ss_dssp CEECSSSSCEEC
T ss_pred CeECCCCChhhc
Confidence 499999998654
Done!