BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009923
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/511 (68%), Positives = 430/511 (84%), Gaps = 5/511 (0%)
Query: 11 ANEEKGERARMASFVGAMAIADLVKTTLGPKGM-----STGRGREVTVTNDGATILKSLH 65
A+EE+ E AR++SF+GA+AI DLVK+TLGPKGM S+GR + VTNDGATILK++
Sbjct: 3 ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIG 62
Query: 66 IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 125
+DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A +
Sbjct: 63 VDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATK 122
Query: 126 CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTN 185
AR ALL VD+ + F+ DLM IA TTLSSK+L+ K+HF +LAV+AV+RLKGS N
Sbjct: 123 AARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGN 182
Query: 186 LESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 245
LE+I +IKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+R
Sbjct: 183 LEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSR 242
Query: 246 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 305
VRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF AG++AIEHA
Sbjct: 243 VRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHA 302
Query: 306 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 365
DF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVL
Sbjct: 303 DFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVL 362
Query: 366 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 425
RGA+ +LDEAERSLHDALCVL+QTV DSR ++GGG EM+MA V +LA +TPGK++ A
Sbjct: 363 RGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVA 422
Query: 426 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISE 485
+E++++AL +PT IADNAG DSA+L+AQLRA H + AG+D+ G++GDM+ LGI+E
Sbjct: 423 MESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITE 482
Query: 486 SFKVKQAVLLSATEAAEMILRVDEIITCAPR 516
SF+VK+ VLLSA EAAE+ILRVD II APR
Sbjct: 483 SFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/517 (61%), Positives = 401/517 (77%), Gaps = 5/517 (0%)
Query: 5 RIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGM----STGRGREVTVTNDGATI 60
+IF D+ EE+ E AR+++FVGA+A+ DLVK+TLGPKGM + VTNDGATI
Sbjct: 4 QIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATI 63
Query: 61 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLV-AAKIHPMTIISG 119
LKS+ +DNPAAKVLV+ISKVQDDEVGDGTTSV VL+ ELLREAEKL+ +KIHP TII G
Sbjct: 64 LKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEG 123
Query: 120 FRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMR 179
+R+A+ A DAL + VDN + F+ DL+ IA TTLSSKILSQDK+HF +LA +A++R
Sbjct: 124 YRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILR 183
Query: 180 LKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKV 239
LKGSTNLE IQIIK GG L DSFLDEGFIL KK G QPKRIENAKIL+ANT +DTDKV
Sbjct: 184 LKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKV 243
Query: 240 KIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGI 299
KI+G + +VDS +K A++E AE++KM+ K+ KI GIN F+NRQLIY++PE+LF D GI
Sbjct: 244 KIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGI 303
Query: 300 LAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQ 359
+IEHADF+G+ERLALVTGGE+ STFD P KLG C +IEEIM+GE + FSG + G+
Sbjct: 304 NSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGE 363
Query: 360 ACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTP 419
ACTIVLRGA+ LDEAERSLHDAL VLSQT ++R + GGG EMVM+K VD A+
Sbjct: 364 ACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNID 423
Query: 420 GKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMA 479
GKKS A+EAF+RAL +PT +ADNAG DS+EL+++LR+ +G+D+ +G++ DM
Sbjct: 424 GKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMR 483
Query: 480 ELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPR 516
+LGI ES+K+K+AV+ SA+EAAE++LRVD II PR
Sbjct: 484 QLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPR 520
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 318 bits (814), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 184/526 (34%), Positives = 316/526 (60%), Gaps = 23/526 (4%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGM------STGRGREVTVTNDGAT 59
I ++ ++ G+ A A+ A+ + +K+T GP+GM S G ++T+TNDGAT
Sbjct: 18 ILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLG---DITITNDGAT 74
Query: 60 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISG 119
IL + + +PAAK+LV I+K QD+E DGT + V+ +GEL+++AE L+ +HP IISG
Sbjct: 75 ILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISG 134
Query: 120 FRMAAECARDALLQKVVDNKENAETFKSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAVM 178
++ A E A LQ + + + +DL+ KIAMT+LSSK ++ +E+ + V AV
Sbjct: 135 YKKAEEVA----LQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVT 190
Query: 179 RL------KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKI-GIGQPKRIENAKILVAN 231
++ K +L++IQI+KK GGS+ D+ L G ++DK++ G PKR+ENAKI + +
Sbjct: 191 QVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALID 250
Query: 232 TAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPE 291
+++ +K ++ A +R++ ++ + E+ ++EKV KI+A G N + ++ I +
Sbjct: 251 ASLEVEKPEL-DAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQ 309
Query: 292 ELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIH 351
A G+LA+ A +E+LA TGG + S D LG+ LIEE +GEDK++
Sbjct: 310 SYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVF 369
Query: 352 FSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEV 411
G + ++ +I++RG ++DE ER+L DAL ++ + D R + GGG E+ +AK++
Sbjct: 370 VEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKL 429
Query: 412 DELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCP-AGIDV 470
+ A + GK+ A+EA++ AL ++ + + +NAG D +L+ +LR+ H+ E GID+
Sbjct: 430 RKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDL 489
Query: 471 ISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPR 516
+G DM + G+ E VK + +ATEAA ++LR+D++++ +
Sbjct: 490 YAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKK 535
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 314 bits (804), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 193/518 (37%), Positives = 309/518 (59%), Gaps = 22/518 (4%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGM------STGRGREVTVTNDGATILKSLHIDNP 69
G A+ + + A IA+ V+TTLGPKGM S G ++ VTNDGATIL + + +P
Sbjct: 21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDGATILDKIDLQHP 77
Query: 70 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 129
AAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+ IHP I G+ +AAE A++
Sbjct: 78 AAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQE 137
Query: 130 ALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL------KG 182
L + + + ++ ET L+KIA T+++ K KE +LAV+AV ++ K
Sbjct: 138 ILDEIAIRVDPDDEET----LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKY 193
Query: 183 STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKI 241
+L++I+ KK G +++S L G ++DK++ + PKR+ENAKI + N A++ K +
Sbjct: 194 VVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE- 252
Query: 242 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILA 301
A++ + S + E++ +++ V I G N ++ I + + A GI+A
Sbjct: 253 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMA 312
Query: 302 IEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQAC 361
+ +E+LA TG +I + + LG+ +++EE + + +I G + +A
Sbjct: 313 VRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAV 372
Query: 362 TIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGK 421
TI++RG + HV+DE ER+L DA+ V+ + D VL GG PE+ +A +DE A++ GK
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 422 KSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAEL 481
++ AIE F+ AL IP T+A+NAGLD+ E++ ++ +EH+ G GIDV G DM E
Sbjct: 433 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEK 492
Query: 482 GISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 519
GI E +VK+ + SA+EAA MILR+D++I + E
Sbjct: 493 GIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPE 530
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 313 bits (801), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 193/518 (37%), Positives = 309/518 (59%), Gaps = 22/518 (4%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGM------STGRGREVTVTNDGATILKSLHIDNP 69
G A+ + + A IA+ V+TTLGPKGM S G ++ VTND ATIL + + +P
Sbjct: 21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDCATILDKIDLQHP 77
Query: 70 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 129
AAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+ IHP II G+ +AAE A++
Sbjct: 78 AAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQE 137
Query: 130 ALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL------KG 182
L + + + ++ ET L+KIA T+++ K KE +LAV+AV ++ K
Sbjct: 138 ILDEIAIRVDPDDEET----LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKY 193
Query: 183 STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKI 241
+L++I+ KK G +++S L G ++DK++ + PKR+ENAKI + N A++ K +
Sbjct: 194 VVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE- 252
Query: 242 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILA 301
A++ + S + E++ +++ V I G N ++ I + + A GI+A
Sbjct: 253 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMA 312
Query: 302 IEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQAC 361
+ +E+LA TG +I + + LG+ +++EE + + +I G + +A
Sbjct: 313 VRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAV 372
Query: 362 TIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGK 421
TI++RG + HV+DE ER+L DA+ V+ + D VL GG PE+ +A +DE A++ GK
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 422 KSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAEL 481
++ AIE F+ AL IP T+A+NAGLD+ E++ ++ +EH+ G GIDV G DM E
Sbjct: 433 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEK 492
Query: 482 GISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 519
GI E +VK+ + SA+EAA MILR+D++I + E
Sbjct: 493 GIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPE 530
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 311 bits (796), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 192/518 (37%), Positives = 308/518 (59%), Gaps = 22/518 (4%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGM------STGRGREVTVTNDGATILKSLHIDNP 69
G A+ + + A IA+ V+TTLGPKGM S G ++ VTND ATIL + + +P
Sbjct: 21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDCATILDKIDLQHP 77
Query: 70 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 129
AAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+ IHP I G+ +AAE A++
Sbjct: 78 AAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQE 137
Query: 130 ALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL------KG 182
L + + + ++ ET L+KIA T+++ K KE +LAV+AV ++ K
Sbjct: 138 ILDEIAIRVDPDDEET----LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKY 193
Query: 183 STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKI 241
+L++I+ KK G +++S L G ++DK++ + PKR+ENAKI + N A++ K +
Sbjct: 194 VVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE- 252
Query: 242 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILA 301
A++ + S + E++ +++ V I G N ++ I + + A GI+A
Sbjct: 253 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMA 312
Query: 302 IEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQAC 361
+ +E+LA TG +I + + LG+ +++EE + + +I G + +A
Sbjct: 313 VRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAV 372
Query: 362 TIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGK 421
TI++RG + HV+DE ER+L DA+ V+ + D VL GG PE+ +A +DE A++ GK
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 422 KSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAEL 481
++ AIE F+ AL IP T+A+NAGLD+ E++ ++ +EH+ G GIDV G DM E
Sbjct: 433 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEK 492
Query: 482 GISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 519
GI E +VK+ + SA+EAA MILR+D++I + E
Sbjct: 493 GIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPE 530
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 187/519 (36%), Positives = 303/519 (58%), Gaps = 22/519 (4%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGM------STGRGREVTVTNDGAT 59
+ ++ E+G+ A+ + A AIAD V+TTLGPKGM S G ++ ++NDGAT
Sbjct: 10 VLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIG---DIIISNDGAT 66
Query: 60 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISG 119
ILK + +++P AK++V++SK QD VGDGTT+ VVL+GELL++AE L+ +HP I +G
Sbjct: 67 ILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNG 126
Query: 120 FRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDA 176
+R+A AR K++D T + L KIA+T LS K + L AV+A
Sbjct: 127 YRLAVNEAR-----KIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNA 181
Query: 177 VMRLK-GSTNLES--IQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANT 232
V ++ G T +++ I++ KK GGS+ D+ G ++DK K+ P ++NAKI + ++
Sbjct: 182 VAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDS 241
Query: 233 AMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEE 292
A++ K +I A+V++ SK + E ++ V+KI G N + ++ I + +
Sbjct: 242 ALEIKKTEIE-AKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQH 300
Query: 293 LFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHF 352
A GI A+ +E+LA TG +I + D+ LG + +EE IG+D++
Sbjct: 301 YLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFV 360
Query: 353 SGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD 412
G + +A +I++RG + HV+ E ER+L+DA+ V++ T D + L+GGG E +A +
Sbjct: 361 MGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLA 420
Query: 413 ELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVIS 472
+ A G++ AIEAF++AL IP T+A+NAG+D + +L+A+ +K G+D+ +
Sbjct: 421 KYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDN 480
Query: 473 GSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 511
VGDM G+ + +VK L SA E A MILR+D++I
Sbjct: 481 NGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 519
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 182/496 (36%), Positives = 279/496 (56%), Gaps = 12/496 (2%)
Query: 30 IADLVKTTLGPKGMST----GRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEV 85
IA+ V+TTLGP+GM GRG+ T++NDGATILK L + +PAAK LVDI+K QD EV
Sbjct: 23 IAEAVRTTLGPRGMDKLIVDGRGK-ATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEV 81
Query: 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETF 145
GDGTTSV +LA E L++ + V +HP II FR A + A + + + V K+ +
Sbjct: 82 GDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVE 141
Query: 146 KSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFL 204
+ L+ K AMT LSSK++SQ K F ++ VDAVM L L+ I I K GG+L++S L
Sbjct: 142 QRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQL 201
Query: 205 DEGFILDKKIGIG----QPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGA 260
G K QPK+ N I + N ++ K + A +RV ++ I A
Sbjct: 202 VAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL-KAEKDNAEIRVHTVEDYQAIVDA 260
Query: 261 EKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGE 320
E + +K++KI G +++ I + + FAD + + ++R + GG
Sbjct: 261 EWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS 320
Query: 321 IASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSL 380
I ++ + S LG C++ EE IG ++ F+G + CTI+LRG + ++E ERSL
Sbjct: 321 IQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSL 380
Query: 381 HDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTI 440
HDA+ ++ + + + V+ GGG EM ++K + + +R PGK+ I A+++AL IP +
Sbjct: 381 HDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQL 440
Query: 441 ADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEA 500
DNAG D+ ++ +LRA H + G G+D+ + + D E + E V+ L +A+EA
Sbjct: 441 CDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEA 500
Query: 501 AEMILRVDEIITCAPR 516
A +I+ VDE I PR
Sbjct: 501 ACLIVSVDETIK-NPR 515
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 181/521 (34%), Positives = 308/521 (59%), Gaps = 20/521 (3%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGM------STGRGREVTVTNDGAT 59
I ++ E G+ A + A+AI++ V+++LGP+GM S G ++ +TNDG T
Sbjct: 9 ILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLG---DIVITNDGVT 65
Query: 60 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISG 119
ILK + +++PAAK++V++SK QD VGDGTT+ V++AG LL++A+ L+ +HP I G
Sbjct: 66 ILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEG 125
Query: 120 FRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMR 179
+RMA+E A+ + + + K A+ K+ L+K+A T+L+SK S K+ +++ +AV
Sbjct: 126 YRMASEEAKRVIDE--ISTKIGADE-KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKS 182
Query: 180 L------KGSTNLESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANT 232
+ K + ++IQ++KK GG++ D+ L G I+DK K+ G P +++AKI + +
Sbjct: 183 VAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDA 242
Query: 233 AMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEE 292
++ K + + +R++ S + E+ +RE V KI + G N + ++ I + +
Sbjct: 243 PLEIKKPE-FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQH 301
Query: 293 LFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHF 352
+ AGI A+ +++LA TG I ST D S LG + +E++ +GED +
Sbjct: 302 YLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFV 361
Query: 353 SGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD 412
+G + +A +I++RG + HV+DE ERS+ D+L V++ + D GGG +A +
Sbjct: 362 TGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLR 421
Query: 413 ELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVIS 472
A+K G++ AIE F+ A+ IP +A+NAGLD +++ +LRAEH K GI+V +
Sbjct: 422 SYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFT 481
Query: 473 GSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITC 513
G + DM + G+ E +V + + SATEAA MILR+D++I
Sbjct: 482 GEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIAT 522
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 291 bits (746), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 179/511 (35%), Positives = 304/511 (59%), Gaps = 14/511 (2%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAK 72
G A+ + + IA+ V++TLGPKGM +V VTNDG TIL+ + +++PAAK
Sbjct: 17 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAK 76
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALL 132
+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++ L
Sbjct: 77 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL- 135
Query: 133 QKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNLESI 189
K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G + + I
Sbjct: 136 -KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLI 193
Query: 190 QIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV 248
+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A++ + + A +R+
Sbjct: 194 KIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETE-TDAEIRI 252
Query: 249 DSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFD 308
+K E E++ +++ V +I A G N ++ I + + A GI+A
Sbjct: 253 TDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKS 312
Query: 309 GIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGA 368
+E+LA TG + + + + LG L+EE I D +I + +A T+++RG
Sbjct: 313 DMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGT 372
Query: 369 SHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEA 428
+ HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A+ A
Sbjct: 373 TEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRA 432
Query: 429 FSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGISES 486
F+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+ E
Sbjct: 433 FADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGVVEP 491
Query: 487 FKVKQAVLLSATEAAEMILRVDEIITCAPRR 517
+VK + SA E+ EM+LR+D++I R
Sbjct: 492 LRVKTQAIQSAAESTEMLLRIDDVIAAEKLR 522
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 291 bits (746), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 303/505 (60%), Gaps = 14/505 (2%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAK 72
G A+ + + IA+ V++TLGPKGM +V VTNDG TIL+ + +++PAAK
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAK 70
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALL 132
+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++ L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL- 129
Query: 133 QKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNLESI 189
K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G + + I
Sbjct: 130 -KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLI 187
Query: 190 QIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV 248
+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A++ + + A +R+
Sbjct: 188 KIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETE-TDAEIRI 246
Query: 249 DSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFD 308
+K E E++ +++ V +I A G N ++ I + + A GI+A
Sbjct: 247 TDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKS 306
Query: 309 GIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGA 368
+E+LA TG + + + + LG L+EE I D +I + +A T+++RG
Sbjct: 307 DMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGT 366
Query: 369 SHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEA 428
+ HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A+ A
Sbjct: 367 TEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRA 426
Query: 429 FSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGISES 486
F+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+ E
Sbjct: 427 FADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGVVEP 485
Query: 487 FKVKQAVLLSATEAAEMILRVDEII 511
+VK + SA E+ EM+LR+D++I
Sbjct: 486 LRVKTQAIQSAAESTEMLLRIDDVI 510
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/511 (35%), Positives = 303/511 (59%), Gaps = 14/511 (2%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAK 72
G A+ + + IA+ V++TLGPKGM +V VTNDG TIL+ + +++PAAK
Sbjct: 17 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAK 76
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALL 132
+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++ L
Sbjct: 77 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL- 135
Query: 133 QKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNLESI 189
K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G + + I
Sbjct: 136 -KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLI 193
Query: 190 QIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV 248
+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A++ + + A +R+
Sbjct: 194 KIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETE-TDAEIRI 252
Query: 249 DSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFD 308
+K E E++ +++ V +I A G N ++ I + + A GI+A
Sbjct: 253 TDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKS 312
Query: 309 GIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGA 368
+E+LA TG + + + LG L+EE I D +I + +A T+++RG
Sbjct: 313 DMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGT 372
Query: 369 SHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEA 428
+ HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A+ A
Sbjct: 373 TEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRA 432
Query: 429 FSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGISES 486
F+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+ E
Sbjct: 433 FADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGVVEP 491
Query: 487 FKVKQAVLLSATEAAEMILRVDEIITCAPRR 517
+VK + SA E+ EM+LR+D++I R
Sbjct: 492 LRVKTQAIQSAAESTEMLLRIDDVIAAEKLR 522
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 302/505 (59%), Gaps = 14/505 (2%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAK 72
G A+ + + IA+ V++TLGPKGM +V VTNDG TIL+ + +++PAAK
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAK 70
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALL 132
+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++ L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL- 129
Query: 133 QKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNLESI 189
K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G + + I
Sbjct: 130 -KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLI 187
Query: 190 QIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV 248
+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A++ + + A +R+
Sbjct: 188 KIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETE-TDAEIRI 246
Query: 249 DSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFD 308
+K E E++ +++ V +I A G N ++ I + + A GI+A
Sbjct: 247 TDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKS 306
Query: 309 GIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGA 368
+E+LA TG + + + LG L+EE I D +I + +A T+++RG
Sbjct: 307 DMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGT 366
Query: 369 SHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEA 428
+ HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A+ A
Sbjct: 367 TEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRA 426
Query: 429 FSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGISES 486
F+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+ E
Sbjct: 427 FADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGVVEP 485
Query: 487 FKVKQAVLLSATEAAEMILRVDEII 511
+VK + SA E+ EM+LR+D++I
Sbjct: 486 LRVKTQAIQSAAESTEMLLRIDDVI 510
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 287 bits (735), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 190/535 (35%), Positives = 304/535 (56%), Gaps = 31/535 (5%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKG---MSTGRGREVTVTNDGATILK 62
+F D + GE R + + A +IA++VK++LGP G M +VT+TNDGATILK
Sbjct: 1 VFGDRST---GEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK 57
Query: 63 SLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRM 122
L +++PAAKVL +++ +QD EVGDGTTSVV++A ELL+ A++LV KIHP ++ISG+R+
Sbjct: 58 LLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRL 117
Query: 123 AAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKG 182
A + A + + ++ N + E + L+ A T++SSK++ + + F L VDAV+ +K
Sbjct: 118 ACKEAVRYISENLIINTD--ELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKY 175
Query: 183 S-------TNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAM 234
+ + SI ++K G S +S L G+ L+ +G G PKRI NAKI + ++
Sbjct: 176 TDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSL 235
Query: 235 DTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELF 294
K+K+ G +V + K +I E +E++QKI+A G N + I + + F
Sbjct: 236 QKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 294
Query: 295 ADAGILAIEHADFDGIERLALVTGGEIASTFDNP------ESVKLGHCKLIEEIMIGEDK 348
+AG +A+ ++R+A +G + ST N E+ LG + + + I +D+
Sbjct: 295 VEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE 354
Query: 349 LIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMA 408
LI + + +++LRGA+ + DE ERSLHDALCV+ + + V+ GGG E ++
Sbjct: 355 LILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALS 414
Query: 409 KEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEH--------Q 460
++ A ++ AI F+R+L+ IP T+A NA DS +L+A+LRA H +
Sbjct: 415 IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 474
Query: 461 KEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAP 515
K G+D+++G D + G+ E VK L ATEAA ILR+D++I P
Sbjct: 475 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP 529
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 280 bits (717), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/511 (34%), Positives = 293/511 (57%), Gaps = 36/511 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAK 72
G A+ + + IA+ V++TLGPKGM +V VTNDG TIL+ + +++PAAK
Sbjct: 17 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAK 76
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALL 132
+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++ L
Sbjct: 77 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL- 135
Query: 133 QKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNLESI 189
K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G + + I
Sbjct: 136 -KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLI 193
Query: 190 QIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV 248
+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A
Sbjct: 194 KIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA--------------- 238
Query: 249 DSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFD 308
IE + +++ V +I A G N ++ I + + A GI+A
Sbjct: 239 --------IEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKS 290
Query: 309 GIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGA 368
+E+LA TG + + + + LG L+EE I D +I + +A T+++RG
Sbjct: 291 DMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGT 350
Query: 369 SHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEA 428
+ HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A+ A
Sbjct: 351 TEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRA 410
Query: 429 FSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGISES 486
F+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+ E
Sbjct: 411 FADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGVVEP 469
Query: 487 FKVKQAVLLSATEAAEMILRVDEIITCAPRR 517
+VK + SA E+ EM+LR+D++I R
Sbjct: 470 LRVKTQAIQSAAESTEMLLRIDDVIAAEKLR 500
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 280 bits (717), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/505 (34%), Positives = 292/505 (57%), Gaps = 36/505 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAK 72
G A+ + + IA+ V++TLGPKGM +V VTNDG TIL+ + +++PAAK
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAK 70
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALL 132
+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++ L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL- 129
Query: 133 QKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNLESI 189
K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G + + I
Sbjct: 130 -KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLI 187
Query: 190 QIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV 248
+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A
Sbjct: 188 KIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA--------------- 232
Query: 249 DSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFD 308
IE + +++ V +I A G N ++ I + + A GI+A
Sbjct: 233 --------IEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKS 284
Query: 309 GIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGA 368
+E+LA TG + + + + LG L+EE I D +I + +A T+++RG
Sbjct: 285 DMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGT 344
Query: 369 SHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEA 428
+ HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A+ A
Sbjct: 345 TEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRA 404
Query: 429 FSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGISES 486
F+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+ E
Sbjct: 405 FADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGVVEP 463
Query: 487 FKVKQAVLLSATEAAEMILRVDEII 511
+VK + SA E+ EM+LR+D++I
Sbjct: 464 LRVKTQAIQSAAESTEMLLRIDDVI 488
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 175/505 (34%), Positives = 291/505 (57%), Gaps = 36/505 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAK 72
G A+ + + IA+ V++TLGPKGM +V VTNDG TIL+ + +++PAAK
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAK 70
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALL 132
+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++ L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL- 129
Query: 133 QKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNLESI 189
K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G + + I
Sbjct: 130 -KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLI 187
Query: 190 QIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV 248
+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A
Sbjct: 188 KIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA--------------- 232
Query: 249 DSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFD 308
IE + +++ V +I A G N ++ I + + A GI+A
Sbjct: 233 --------IEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKS 284
Query: 309 GIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGA 368
+E+LA TG + + + LG L+EE I D +I + +A T+++RG
Sbjct: 285 DMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGT 344
Query: 369 SHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEA 428
+ HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A+ A
Sbjct: 345 TEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRA 404
Query: 429 FSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGISES 486
F+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+ E
Sbjct: 405 FADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGVVEP 463
Query: 487 FKVKQAVLLSATEAAEMILRVDEII 511
+VK + SA E+ EM+LR+D++I
Sbjct: 464 LRVKTQAIQSAAESTEMLLRIDDVI 488
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/505 (34%), Positives = 291/505 (57%), Gaps = 36/505 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAK 72
G A+ + + IA+ V++TLGPKGM +V VTNDG TIL+ + +++PAAK
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAK 70
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALL 132
+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++ L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELL- 129
Query: 133 QKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNLESI 189
K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G + + I
Sbjct: 130 -KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLI 187
Query: 190 QIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV 248
+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A
Sbjct: 188 KIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA--------------- 232
Query: 249 DSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFD 308
IE + +++ V +I A G N ++ I + + A GI+A
Sbjct: 233 --------IEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKS 284
Query: 309 GIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGA 368
+E+LA TG + + + + LG L+EE I D +I + +A T+++RG
Sbjct: 285 DMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGT 344
Query: 369 SHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEA 428
+ HV++E R++ A+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A+ A
Sbjct: 345 TEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRA 404
Query: 429 FSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGISES 486
F+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+ E
Sbjct: 405 FADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGVVEP 463
Query: 487 FKVKQAVLLSATEAAEMILRVDEII 511
+VK + SA E+ EM+LR+D++I
Sbjct: 464 LRVKTQAIQSAAESTEMLLRIDDVI 488
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/515 (33%), Positives = 280/515 (54%), Gaps = 9/515 (1%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKG---MSTGRGREVTVTNDGATILK 62
+ ++ + +G+ +++ +A+ + +K TLGP G + ++ T++NDGATILK
Sbjct: 12 VLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILK 71
Query: 63 SLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRM 122
L + +PAAK LVDIS+ QD EVGDGTTSV +LAGEL++EA+ + I I+ G+R
Sbjct: 72 LLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRK 131
Query: 123 AAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL-K 181
A A + + + VD + + L + A T +SSK++ + + F ++ VDAV+ L +
Sbjct: 132 AVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDR 191
Query: 182 GSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIG----QPKRIENAKILVANTAMDTD 237
+ + I I K PGG++++S G K QPK+ N KIL N ++
Sbjct: 192 NDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELEL- 250
Query: 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADA 297
K + A VRV+ + I AE Q + EK++++ G N +++ I + + FAD
Sbjct: 251 KAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADR 310
Query: 298 GILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEM 357
I D + R+ GG I ST + + LG C L EE+ IG ++ F G
Sbjct: 311 NIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQ 370
Query: 358 GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARK 417
+ CT++LRG + V+ E ERSLHDA+ ++ + + + ++ GGG EM ++K + + ++
Sbjct: 371 AKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKT 430
Query: 418 TPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGD 477
GK+ I AF++AL IP + +NAG D+ E++ +LR H K G+ + ++GD
Sbjct: 431 IAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGD 490
Query: 478 MAELGISESFKVKQAVLLSATEAAEMILRVDEIIT 512
+ E VK L SATEA +IL VDE IT
Sbjct: 491 NFAKFVWEPALVKINALNSATEATNLILSVDETIT 525
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 181/509 (35%), Positives = 286/509 (56%), Gaps = 19/509 (3%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKG---MSTGRGREVTVTNDGATILKSLHIDNPAAK 72
G A + + A A+A+ +KT+LGP G M + +VTVTNDGATIL + +D+ AK
Sbjct: 8 GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAK 67
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA---RD 129
++V++SK QDDE+GDGTT VVVLAG LL EAE+L+ IHP+ I G+ AA A D
Sbjct: 68 LMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLD 127
Query: 130 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL----KGSTN 185
+ V+ + +N E L++ A TTL SK+++ ++AV+AV+ + + +
Sbjct: 128 KISDSVLVDMKNTEP----LIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVD 183
Query: 186 LESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKIYGA 244
E I++ K GG L+D+ L +G I+DK Q PK++E+AKI + + K K
Sbjct: 184 FELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTK-H 242
Query: 245 RVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEH 304
++ V S+ ++ EK+K E +++I G N V + + L + A+
Sbjct: 243 KLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRW 302
Query: 305 ADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIG--EDKLIHFSGVEMGQACT 362
IE +A+ TGG I F + KLG L++EI G +DK++ + +A T
Sbjct: 303 VGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVT 362
Query: 363 IVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKK 422
I +RG + +++EA+RSLHDALCV+ + D+RV++GGG E+ A V + A K P +
Sbjct: 363 IFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLE 422
Query: 423 SHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPA-GIDVISGSVGDMAEL 481
+A+ AF+ AL IP +A+N+G++ + + ++RA KE PA GID + DM
Sbjct: 423 QYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQ 482
Query: 482 GISESFKVKQAVLLSATEAAEMILRVDEI 510
+ E+ K+ + AT+ MIL++D+I
Sbjct: 483 HVIETLIGKKQQISLATQMVRMILKIDDI 511
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 272 bits (695), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 176/526 (33%), Positives = 291/526 (55%), Gaps = 21/526 (3%)
Query: 6 IFRDEANEEK--GERARMASFVGAMAIADLVKTTLGPKGMST---GRGREVTVTNDGATI 60
I +D+ N+++ G A+ + + A ++A ++KT+LGP+G+ E+T+TNDGATI
Sbjct: 31 IVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATI 90
Query: 61 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGF 120
L + +DN AK+LV +SK QDDE+GDGTT VVVLA LL +A +L+ IHP+ I +GF
Sbjct: 91 LSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGF 150
Query: 121 RMAAECARDALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMR 179
AA+ A L + D + N E F+ L++ A T+L SKI+S+D + F ++AV+AV+
Sbjct: 151 DEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVIN 210
Query: 180 L----KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRI------ENAKIL 228
+ + + + I++ + GGS+ DS L G ILDK Q PK + + K+
Sbjct: 211 VMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLA 270
Query: 229 VANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYN 288
+ + K K ++ + S+ + +++ E+ K +E + + G + + + +
Sbjct: 271 ILTCPFEPPKPKTK-HKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDD 329
Query: 289 FPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIG--E 346
L + A+ +E +A+ T G I F + KLG C I E G +
Sbjct: 330 EANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTK 389
Query: 347 DKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMV 406
D+++ + + T +RG++ ++DEAER+LHD+LCV+ V DSRV++GGG E+
Sbjct: 390 DRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVT 449
Query: 407 MAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPA 466
M+ V E A K G +A F++AL IP T+A+N+GLD ++ L+++ KE
Sbjct: 450 MSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISN 509
Query: 467 -GIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 511
G+D + DM EL + + F K+ +L AT+ MIL++D +I
Sbjct: 510 IGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 180/533 (33%), Positives = 286/533 (53%), Gaps = 38/533 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHIDNPAAK 72
G+ R + + MA+A++VK++LGP G+ ++ TVTNDGATIL L + +PA K
Sbjct: 22 GDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGK 81
Query: 73 VLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAA-ECAR--D 129
+LV++++ QD E+GDGTTSVV++A ELL+ A +LV KIHP TII+GFR+A E R +
Sbjct: 82 ILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFIN 141
Query: 130 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTN---- 185
+L VD K L+ IA T++SSKI+ D + F + VDA++ +K +
Sbjct: 142 EVLSTSVDT-----LGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEI 196
Query: 186 ---LESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMDTDKVKI 241
++++ ++K G S +S L G+ L+ + PKRI + +A ++ K ++
Sbjct: 197 KYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARM 256
Query: 242 -YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGIL 300
G ++ +D + +I E + E+V+KII G + + I + + F +A I+
Sbjct: 257 AMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIM 316
Query: 301 AIEHADFDGIERLALVTGGEIASTFDNP------ESVKLGHCKLIEEIMIGEDKLIHFSG 354
+ + + R+A TG + S+ N ES LG C + + +D+ I G
Sbjct: 317 GVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKG 376
Query: 355 VEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDEL 414
+ +I+LRGA+ + LDE ERSLHD+L V+ +T+ V+ GGG E + +D
Sbjct: 377 TSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNF 436
Query: 415 ARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEH------------QKE 462
A ++ AI F+ AL+ IP T+A NA DS+EL+A+LR+ H ++
Sbjct: 437 ATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRS 496
Query: 463 GCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAP 515
G+D+I G + D G+ E K L SA EA ILR+D +IT P
Sbjct: 497 YRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDP 549
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/470 (34%), Positives = 269/470 (57%), Gaps = 12/470 (2%)
Query: 50 EVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAA 109
++ +TNDGATILK + I +PAAK++V++SK QD EVGDGTT+ VL+GELL +AE+L+
Sbjct: 8 DIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMK 67
Query: 110 KIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHF 169
+H I G+R AAE R+ L + + E + L+KIA T ++ K KE
Sbjct: 68 GVHSTIISEGYRHAAEKCREILETITIAISPDDE---AALIKIAGTAITGKGAEAYKEKL 124
Query: 170 GQLAVDAVMRLKGSTN-------LESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKR 221
L V AV + LE+I+I K+ GGS+ DS L +G ++DK + P++
Sbjct: 125 SALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEK 184
Query: 222 IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFV 281
+ENAKIL+ + ++ K ++ + +++ S + E++ MRE +K+IA G N
Sbjct: 185 VENAKILLLSCPVEFRKTEV-DSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVF 243
Query: 282 NRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEE 341
++ I + + AGI A+ ++RL+ VTG I D + +G L+EE
Sbjct: 244 CQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEE 303
Query: 342 IMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGG 401
+ K+ + +G + +A T++L G + HV+D + +L+DAL V+ + D +V+ GGG
Sbjct: 304 KEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGG 363
Query: 402 WPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQK 461
E+ ++ + E A G++ A+ F+ AL IP +A+NAGLD +++ +LR++H+K
Sbjct: 364 SSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEK 423
Query: 462 EGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 511
AG++V +G V DM E + E ++K + +A EA MILR+D+++
Sbjct: 424 GNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVV 473
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 171/517 (33%), Positives = 281/517 (54%), Gaps = 23/517 (4%)
Query: 12 NEEKGERARMASFVGAMAIADLVKTTLGPKGMST----GRGREVTVTNDGATILKSLHID 67
+ +K + R ++ A A+AD ++T+LGPKGM G+G +VT+TNDGATILK + +
Sbjct: 5 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKG-DVTITNDGATILKQMQVL 63
Query: 68 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA 127
+PAA++LV++SK QD E GDGTTSVV++AG LL KL+ IHP I F+ A E
Sbjct: 64 HPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKG 123
Query: 128 RDALLQKVVDNKENAE-TFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL-----K 181
++ + D E + + L+ A T+L+SK++SQ ++VDAVM++
Sbjct: 124 ----IEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATA 179
Query: 182 GSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKI 241
S +L I+I+KK GG++ D L EG +L +K+ R+E AKI + + K +
Sbjct: 180 TSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDM 239
Query: 242 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCF-----VNRQLIYNFPEELFAD 296
++ V + + E+ + V++I G N + R + +
Sbjct: 240 DN-QIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK 298
Query: 297 AGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMI-GEDKLIHFSGV 355
I+ ++ + + IE + G + + D + LG +L EE+ + G KLI +G
Sbjct: 299 MKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGC 358
Query: 356 -EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDEL 414
G+ TIV+RG++ V++EAERS+HDALCV+ V ++ GGG PE+ +A + E
Sbjct: 359 ASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEY 418
Query: 415 ARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGS 474
+R G +S+ I AF+ A+ IP+T+A+NAGL+ + +LR H + GI+V G
Sbjct: 419 SRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGG 478
Query: 475 VGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 511
+ ++ E + + V + L ATE IL++D+++
Sbjct: 479 ISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 515
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 166/533 (31%), Positives = 280/533 (52%), Gaps = 55/533 (10%)
Query: 12 NEEKGERARMASFVGAMAIADLVKTTLGPKGM----STGRGREVTVTNDGATILKSLHID 67
N+EK + R A+ + A ++AD ++T+LGPKGM T RG E+ ++NDG TILK + I
Sbjct: 13 NKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRG-EIIISNDGHTILKQMAIL 71
Query: 68 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA 127
+P A++LV++S QD E GDGTTSVV+L G LL AE+L+ IHP I F+ AA+ +
Sbjct: 72 HPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRS 131
Query: 128 RDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKG----S 183
D LL+ + + + + L++ A T+LSSKI+SQ LAVD+V+++ +
Sbjct: 132 VDILLEMC---HKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKN 188
Query: 184 TNLESIQIIKKPGGSLKDSFLDEGFILDKKI--GIGQPKRIENAKI-------------- 227
+L I+++KK GG++ D+ + +G +L + G P R E AKI
Sbjct: 189 VDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDT 248
Query: 228 ---LVANTAMDTDKV----KIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCF 280
++ N DK+ + Y + + +K +R+ V + H
Sbjct: 249 ENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALH----- 303
Query: 281 VNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIE 340
+ I+ ++ + + IE L+ G + + + +L L+E
Sbjct: 304 ------------FLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVE 351
Query: 341 EIMIGEDKLIHFSGVEMGQA---CTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVL 397
EI K++ +G+ A ++V+RGA++ ++DE ERSLHDALCV+ V + ++
Sbjct: 352 EIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLI 411
Query: 398 FGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRA 457
GGG PE+ +++ + + AR G ++ + F+ AL IPTT+A+NAGL+S +++ +LR+
Sbjct: 412 AGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRS 471
Query: 458 EHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEI 510
+H+ GI V + E I + V + + A+E + ILR+D+I
Sbjct: 472 KHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 524
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 221 bits (562), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 153/513 (29%), Positives = 267/513 (52%), Gaps = 19/513 (3%)
Query: 14 EKGERARMASFVGAMAIADLVKTTLGPKGMSTGRGRE---VTVTNDGATILKSLHIDNPA 70
E G + + + A IAD+++T LGPK M + +TNDG IL+ + + +PA
Sbjct: 5 ESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPA 64
Query: 71 AKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDA 130
AK +++IS+ QD+EVGDGTTSV++LAGE+L AE + ++HP +IS +R A D
Sbjct: 65 AKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKAL----DD 120
Query: 131 LLQKVVDNKENAETFKSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESI 189
++ + +T D M I +++++K++S+ +A+DAV ++ N
Sbjct: 121 MISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKE 180
Query: 190 QIIKK-------PGGSLKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKVKI 241
IKK PGG ++DS + G +++K + + +R I+N +I++ +++++ K +
Sbjct: 181 IDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE- 239
Query: 242 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILA 301
+ + I E++ +++ + II + + + I + + A I A
Sbjct: 240 SQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITA 299
Query: 302 IEHADFDGIERLALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQA 360
I R+A G I S + +G L+E IG++ + + +A
Sbjct: 300 IRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKA 359
Query: 361 CTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPG 420
CTI+LRGAS +L E ER+L DA+ V + D +++ GGG EM +A + E ++ G
Sbjct: 360 CTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTG 419
Query: 421 KKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPA-GIDVISGSVGDMA 479
+ A ++AL IP T+ N G + L+ LRA+H +E C G++ +G++ DM
Sbjct: 420 VEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMK 479
Query: 480 ELGISESFKVKQAVLLSATEAAEMILRVDEIIT 512
ELGI E VK +A E A ++LR+D+I++
Sbjct: 480 ELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVS 512
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 209 bits (531), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 152/519 (29%), Positives = 273/519 (52%), Gaps = 33/519 (6%)
Query: 15 KGERARMASFVGAMAIADLVKTTLGPKG----MSTGRGREVTVTNDGATILKSLHIDNPA 70
+ + A + A + D+++T LGPKG + +G G ++ +T DG +L + I +P
Sbjct: 7 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAG-DIKLTKDGNVLLHEMQIQHPT 65
Query: 71 AKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDA 130
A ++ ++ QDD GDGTTS V++ GELL++A+ ++ +HP I GF A E A
Sbjct: 66 ASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQF 125
Query: 131 LLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS---TNLE 187
L Q V + + ET L+ +A T+L +K+ ++ + + VD+++ +K +L
Sbjct: 126 LEQVKVSKEMDRET----LIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLF 181
Query: 188 SIQIIKKPGGSLKDSFLDEGFILDKKIGIGQP---KRIENAKILVANTAMDTDKVKIYGA 244
++I++ S D+ L G +LD G P KR+E+A IL N +++ +K ++ +
Sbjct: 182 MVEIMEMKHKSETDTSLIRGLVLDH--GARHPDMKKRVEDAYILTCNVSLEYEKTEV-NS 238
Query: 245 RVRVDSMSKAAEIEGAEKQKMREKVQKIIA----------HGINCFVNRQLIYNFPEELF 294
S + ++ AE++ + ++V+KII G +N++ I F +
Sbjct: 239 GFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGF-VVINQKGIDPFSLDAL 297
Query: 295 ADAGILAIEHADFDGIERLALVTGGEIASTFD--NPESVKLGHCKLIEEIMIGEDKLIHF 352
A GI+A+ A +ERL L GG ++ D NP+ + LGH + E +GE+K
Sbjct: 298 AKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCL-LGHAG-VYEYTLGEEKFTFI 355
Query: 353 SGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD 412
++ T++++G + H L + + ++ D L + ++D V+ G G E+ MA+ +
Sbjct: 356 EKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALV 415
Query: 413 ELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVIS 472
+ G+ ++AF+ AL+ IP +A N+G D E + +++AEH + G G+D+ +
Sbjct: 416 KYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNT 475
Query: 473 GSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 511
G AE GI +++ VK+ +L S T A IL VDEI+
Sbjct: 476 GEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 514
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 142/539 (26%), Positives = 275/539 (51%), Gaps = 40/539 (7%)
Query: 5 RIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKG----MSTGRGREVTVTNDGATI 60
++ +A + + A + A + +++T LGPKG + G G + +T DG +
Sbjct: 4 QLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAG-NIKLTKDGKVL 62
Query: 61 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGF 120
L + I +P A ++ + QD+ GDGTT+VV L GELLR+A + + +HP I GF
Sbjct: 63 LTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGF 122
Query: 121 RMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 180
+A + + L + +K N + L+++A ++L +K+ + E + DAV+ +
Sbjct: 123 EIARKESM-KFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSV 181
Query: 181 KGST----NLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ----PKRIENAKILVANT 232
+ +L ++I++ S KD+ +G +LD G+ P R++NA +L+ N
Sbjct: 182 YDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHG---GRHPDMPTRVKNAYVLILNV 238
Query: 233 AMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKII-----AHGIN-----CFVN 282
+++ +K ++ + S + ++ +E++ + K++KII G++ +N
Sbjct: 239 SLEYEKTEV-NSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIIN 297
Query: 283 RQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEI 342
++ I ++FA ILA+ A +ERL LVTGGE ++ ++ LG L+ +
Sbjct: 298 QKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQE 357
Query: 343 MIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGW 402
IGE+K + + ++CTI+++G++H+ L + + ++ D L ++ + D ++ G G
Sbjct: 358 TIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGA 417
Query: 403 PEMVMAK-----EVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLR- 456
+ +++ +++L K GK IEAF+ AL+ IP T+ N+G D +++A +
Sbjct: 418 FYIALSRYLRSANMNKLGAK--GKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVED 475
Query: 457 ----AEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 511
A+ E G+D+ G D GI +S++V + + AT A +L DE++
Sbjct: 476 ELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELL 534
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 139/491 (28%), Positives = 244/491 (49%), Gaps = 13/491 (2%)
Query: 30 IADLVKTTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVG 86
+A +T GP GM+ ++ VTND ATIL+ L + +PAAK++V S +Q+ EVG
Sbjct: 23 LAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVG 82
Query: 87 DGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFK 146
DGT V+V AG LL AE+L+ + +I G+ +A + A + L V + +N
Sbjct: 83 DGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDV- 141
Query: 147 SDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL---KGSTNLESIQIIKKPGGSLKDSF 203
++ + T++ SK ++ +L A + + G N+++I++ K G + S
Sbjct: 142 DEVSSLLHTSVMSKQYG-NEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSS 200
Query: 204 LDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQ 263
+ G + K+ G +++AKI V + D + G V + S + E+
Sbjct: 201 VLHGMVFKKETE-GDVTSVKDAKIAVYSCPFDGMITETKGT-VLIKSAEELMNFSKGEEN 258
Query: 264 KMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIAS 323
M +V+ I G N V + + I+ + + RL G
Sbjct: 259 LMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALP 318
Query: 324 TFDNPESVKLGHCKLIEEIMIGEDKLIHFSG-VEMGQACTIVLRGASHHVLDEAERSLHD 382
+ P ++GHC + +G+ +++ F E G TIVLRG++ +++D+ ER++ D
Sbjct: 319 RLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDD 378
Query: 383 ALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIAD 442
+ D R++ GGG E+ +AK++ PG + +AI+ F+ A AIP +A+
Sbjct: 379 GVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAE 438
Query: 443 NAGLDSAELIAQLRAEHQKEGCPAGIDVIS--GSVGDMAELGISESFKVKQAVLLSATEA 500
N+G+ + E+I++L A HQ+ G+D+ + +V DM E G+ +++ K + AT A
Sbjct: 439 NSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNA 498
Query: 501 AEMILRVDEII 511
A +LRVD+II
Sbjct: 499 AVTVLRVDQII 509
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 138/506 (27%), Positives = 248/506 (49%), Gaps = 34/506 (6%)
Query: 36 TTLGPKGMS---TGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSV 92
T++GP G + ++ +TND AT+L+ L I +PA KVLV ++ Q ++GDGT V
Sbjct: 44 TSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLV 103
Query: 93 VVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKI 152
++LAGELL +EKL++ + + II G+ MA + L + VV + K++L+K+
Sbjct: 104 MILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKND-KNELLKM 162
Query: 153 AMTTLSSKILSQDKEHFGQLAVDAVMRLKGST---------NLESIQIIKKPGGSLKDSF 203
+SSK + + +L +AV + N++SI+++K GGSL +S
Sbjct: 163 IKPVISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNST 221
Query: 204 LDEGFILDKKIGIGQPKRI---ENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGA 260
+ +G + +++ G K + + K+ V +D + G V + + + +
Sbjct: 222 VIKGMVFNREPE-GHVKSLSEDKKHKVAVFTCPLDIANTETKGT-VLLHNAQEMLDFSKG 279
Query: 261 EKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGE 320
E++++ +++I G+ C V + GIL ++ + RL V G
Sbjct: 280 EEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGAT 339
Query: 321 IASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGV--EMGQACTIVLRGASHHVLDEAER 378
P +LG + ++ + IG D++ F E+ + TI+LRGA+ + LD+ ER
Sbjct: 340 PLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIER 399
Query: 379 SLHDALCVLSQTVNDS--RVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAI 436
++ D + + + S ++L G G E+ + + + +TPG AI+ F+ A +
Sbjct: 400 AIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVV 459
Query: 437 PTTIADNAGLDSAELIAQLRAEH--------QKEGCPAGIDVISGS---VGDMAELGISE 485
P T+A+ AGLD E++ L A H + + G+D+ S V D+ E I +
Sbjct: 460 PRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYD 519
Query: 486 SFKVKQAVLLSATEAAEMILRVDEII 511
K+ + ATEAA +L +D+II
Sbjct: 520 MLATKKFAINVATEAATTVLSIDQII 545
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 191/375 (50%), Gaps = 41/375 (10%)
Query: 6 IFRDEANEEK-GERARMASFVGAMAIADLVKTTLGPKGM------STGRGREVTVTNDGA 58
+F + + E G +A++++ A A+AD+++T LGPK M G + +TNDG
Sbjct: 6 VFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMG---GLVLTNDGH 62
Query: 59 TILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLRE-AEKLVAAKIHPMTII 117
IL+ + + +PAAK ++++S+ QD+EVGDGTT+V++LAGE+L + A L+ IHP+ II
Sbjct: 63 AILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIII 122
Query: 118 SGFRMAAECARDALLQ--KVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVD 175
+ A A + + Q K VD + +A + K+ ++ +K + E +LA+D
Sbjct: 123 QALKKALTDALEVIKQVSKPVDVENDAA-----MKKLIQASIGTKYVIHWSEKMCELALD 177
Query: 176 AVMRLK--------GSTNLE-----SIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPK-- 220
AV ++ G N E +++ K PGG + DS + +G +L+K + PK
Sbjct: 178 AVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKD--VVHPKMS 235
Query: 221 -RIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINC 279
IEN ++++ + ++ K + + ++ I E+++++ ++I+A
Sbjct: 236 RHIENPRVVLLDCPLEYKKGE-SQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTL 294
Query: 280 FVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLG-HCKL 338
+ + + + + G + R+A VTG I + ++ + +G +C L
Sbjct: 295 VITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGL 354
Query: 339 IEEIMIGEDKLIHFS 353
+ MIG++ +FS
Sbjct: 355 FKVEMIGDE---YFS 366
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 91/154 (59%)
Query: 359 QACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKT 418
+ACTI+LRG S +L+E +R+L DA+ V + + GGG EM ++ ++ E A++
Sbjct: 431 KACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQL 490
Query: 419 PGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDM 478
G + +A + A+ IP T+ NAG D L++QLRA+H + GID G + DM
Sbjct: 491 EGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDM 550
Query: 479 AELGISESFKVKQAVLLSATEAAEMILRVDEIIT 512
GI E +KQ + +A E+A ++LRVD+I++
Sbjct: 551 VSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVS 584
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 134/566 (23%), Positives = 234/566 (41%), Gaps = 115/566 (20%)
Query: 17 ERARMASFVGAMAIADLVKTTLGPKGMST---GRGREVTVTNDGATILKSLHIDNP---- 69
E AR G A+AD VK TLGPKG + + T+TNDG +I K + +++P
Sbjct: 9 EEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKI 68
Query: 70 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 129
A+++ +++K DD GDGTT+ VLA L+RE + VAA +P+ + G A E +
Sbjct: 69 GAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTE 128
Query: 130 ALLQ--KVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKG----- 182
LL+ K V+ KE +IA T +S + G L +A+ ++
Sbjct: 129 TLLKGAKEVETKE----------QIAATA----AISAGDQSIGDLIAEAMDKVGNEGVIT 174
Query: 183 --STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKR----IENAKILVANTAMDT 236
+N +Q+ G ++ F+ D P+R +E+ IL+ ++ + T
Sbjct: 175 VEESNTFGLQLELTEGMRFDKGYISGYFVTD-------PERQEAVLEDPYILLVSSKVST 227
Query: 237 DKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFAD 296
K D + ++ GA K + IIA + L+ N F
Sbjct: 228 VK----------DLLPLLEKVIGAGKPLL------IIAEDVEGEALSTLVVNKIRGTFKS 271
Query: 297 AGILAIEHADFDG--IERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGEDKL 349
+ A D ++ +A++TGG++ S T +N + LG + ++++ +D+
Sbjct: 272 VAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKAR---KVVVTKDET 328
Query: 350 IHFSG----------------------------------VEMGQACTIVLRGASHHV-LD 374
G ++ ++ GA+ V L
Sbjct: 329 TIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELK 388
Query: 375 EAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALV 434
E + + DA+ V + ++ GGG + A +DEL K G ++ AL
Sbjct: 389 ERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDEL--KLEGDEATGANIVKVALE 445
Query: 435 AIPTTIADNAGLDS---AELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQ 491
A IA N+GL+ AE + L A H G++ +G D+ G+++ KV +
Sbjct: 446 APLKQIAFNSGLEPGVVAEKVRNLPAGH-------GLNAQTGVYEDLLAAGVADPVKVTR 498
Query: 492 AVLLSATEAAEMILRVDEIITCAPRR 517
+ L +A A + L + ++ P +
Sbjct: 499 SALQNAASIAGLFLTTEAVVADKPEK 524
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 17 ERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSL----HIDNP 69
E AR A G A+A+ VK TLGP+G + ++ T+T DG T+ K + H++N
Sbjct: 9 EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENI 68
Query: 70 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA 127
A++L +++ +D GDGTT+ VLA ++RE K VAA +P+ + G A E A
Sbjct: 69 GAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAA 126
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 358 GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARK 417
G I + A+ L E + DAL V + ++ GGG + V+EL +K
Sbjct: 372 GGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKK 430
Query: 418 TPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGD 477
G ++ + RAL IA+NAG + + ++ Q+ AE + G + +G D
Sbjct: 431 LEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRY--GFNAATGEFVD 488
Query: 478 MAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 519
M E GI + KV ++ L +A +IL + ++ P ++E
Sbjct: 489 MVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKE 530
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 119/528 (22%), Positives = 216/528 (40%), Gaps = 112/528 (21%)
Query: 52 TVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLV 107
T+TNDG +I K + +++P A+++ +++K DD GDGTT+ VLA L+RE + V
Sbjct: 5 TITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNV 64
Query: 108 AAKIHPMTIISGFRMAAECARDALLQ--KVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165
AA +P+ + G A E + LL+ K V+ KE +IA T +S
Sbjct: 65 AAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKE----------QIAATA----AISAG 110
Query: 166 KEHFGQLAVDAVMRLKG-------STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ 218
+ G L +A+ ++ +N +Q+ G ++ F+ D
Sbjct: 111 DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTD------- 163
Query: 219 PKR----IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIA 274
P+R +E+ IL+ ++ + T K D + ++ GA K + IIA
Sbjct: 164 PERQEAVLEDPYILLVSSKVSTVK----------DLLPLLEKVIGAGKPLL------IIA 207
Query: 275 HGINCFVNRQLIYNFPEELFADAGILAIEHADFDG--IERLALVTGGEIAS-----TFDN 327
+ L+ N F + A D ++ +A++TGG++ S T +N
Sbjct: 208 EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 267
Query: 328 PESVKLGHCKLIEEIMIGEDKLIHFSG--------------------------------- 354
+ LG + ++++ +D+ G
Sbjct: 268 ADLSLLGKAR---KVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQER 324
Query: 355 -VEMGQACTIVLRGASHHV-LDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD 412
++ ++ GA+ V L E + + DA+ V + ++ GGG + A +D
Sbjct: 325 LAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLD 383
Query: 413 ELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDS---AELIAQLRAEHQKEGCPAGID 469
EL K G ++ AL A IA N+GL+ AE + L A H G++
Sbjct: 384 EL--KLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGH-------GLN 434
Query: 470 VISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 517
+G D+ G+++ KV ++ L +A A + L + ++ P +
Sbjct: 435 AQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEK 482
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Query: 207 GFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKM 265
G I+DK K+ G P +++AKI + + ++ K + + +R++ S + E+ +
Sbjct: 3 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPE-FDTNLRIEDPSMIQKFLAQEENML 61
Query: 266 REKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTF 325
RE V KI + G N + ++ I + + + AGI A+ +++LA TG I ST
Sbjct: 62 REMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTI 121
Query: 326 DNPESVKLGHCKLIEEIMIGEDKLIHFSG 354
D S LG + +E++ +GED + +G
Sbjct: 122 DEISSSDLGTAERVEQVKVGEDYMTFVTG 150
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
Query: 207 GFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKM 265
G ++DK K+ P ++NAKI + ++A++ K +I A+V++ SK + E
Sbjct: 3 GIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIE-AKVQISDPSKIQDFLNQETNTF 61
Query: 266 REKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTF 325
++ V+KI G N + ++ I + + A GI A+ +E+LA TG +I +
Sbjct: 62 KQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 121
Query: 326 DNPESVKLGHCKLIEEIMIGEDKLIHFSG 354
D+ LG + +EE IG+D++ G
Sbjct: 122 DDLTPSVLGEAETVEERKIGDDRMTFVMG 150
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 34/224 (15%)
Query: 18 RARMASFVGAMAIADLVKTTLGPKGM------STGRGREVTVTNDGATILKSLHI----D 67
R RM G +AD VK TLGPKG S G R +T DG ++ K + + +
Sbjct: 13 RDRM--LKGVNILADAVKVTLGPKGRNVVIDKSFGAPR---ITKDGVSVAKEIELSDKFE 67
Query: 68 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA 127
N A+++ +++ +DE GDGTT+ VLA ++RE K VAA ++PM + G
Sbjct: 68 NMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGI------- 120
Query: 128 RDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHF-GQLAVDAVMRLKGSTNL 186
D KVV+ ++A +D ++A +S + E F GQ +A+ R+
Sbjct: 121 -DVATAKVVEAIKSAARPVNDSSEVAQVG----TISANGESFIGQQIAEAMQRVGN---- 171
Query: 187 ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVA 230
E + +++ G + + EG D+ G P + NA ++A
Sbjct: 172 EGVITVEENKGMETEVEVVEGMQFDR--GYLSPYFVTNADKMIA 213
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
Query: 358 GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARK 417
G I + G + + E + + DAL V + V+ GG +V +V E
Sbjct: 374 GGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVV--GGGVALVQGAKVLEGLSG 431
Query: 418 TPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGD 477
+ I RAL A IA+NAG+D A + ++R K G + + GD
Sbjct: 432 ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDK---AFGFNAQTEEYGD 488
Query: 478 MAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAP 515
M + G+ + KV + L A A +++ + +I P
Sbjct: 489 MFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G AR+ G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G AR+ G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 9 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 68
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 69 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 128
Query: 129 DAL 131
+ L
Sbjct: 129 EEL 131
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G AR+ G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 9 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 68
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 69 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 128
Query: 129 DAL 131
+ L
Sbjct: 129 EEL 131
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G AR+ G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G AR+ G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G AR+ G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G AR+ G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G A + G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G A + G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 9 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 68
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 69 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAV 128
Query: 129 DAL 131
+ L
Sbjct: 129 EEL 131
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G A + G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G A + G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G A + G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G A + G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMSTGRGREV---TVTNDGATILKSLHID----N 68
G A + G +AD VK TLGPKG + + T+T DG ++ + + ++ N
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 69 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 128
A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAV 127
Query: 129 DAL 131
+ L
Sbjct: 128 EEL 130
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 199 LKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEI 257
++DS + G +++K + + +R I+N +I++ +++++ K + + + I
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE-SQTDIEITREEDFTRI 59
Query: 258 EGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVT 317
E++ + + + II + + + I + + A + AI R+A
Sbjct: 60 LQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARAC 119
Query: 318 GGEIASTFDNPESVKLGH----CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGAS 369
G I S PE ++ L+E IG++ + + +ACTI+LRGAS
Sbjct: 120 GARIVS---RPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGAS 172
>pdb|1MG7|A Chain A, Crystal Structure Of Xol-1
pdb|1MG7|B Chain B, Crystal Structure Of Xol-1
Length = 417
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 106 LVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165
V +HP +M A+ LL+ +N+E+ +TF L+ MT S + Q+
Sbjct: 211 FVKTDLHPEDFTP--QMFPSQAKAKLLRDAFNNEEDEDTFPDILVPAYMTAHSKNRVRQE 268
Query: 166 KEHFGQLAVDAVMRLKGSTN----LESIQIIKKPGGSL----KDSFLDEGFILDKKIGIG 217
++ D+ + L+ N +E ++ + GG L KDSF D+ I I I
Sbjct: 269 DYTCLEVEFDSQVALEKLMNEHEQVEGFEV--QQGGILVALKKDSFFDDELIEKIAIAIA 326
Query: 218 QPKR 221
R
Sbjct: 327 TESR 330
>pdb|3FNN|A Chain A, Biochemical And Structural Analysis Of An Atypical Thyx:
Corynebacterium Glutamicum Nchu 87078 Depends On Thya
For Thymidine Biosynthesis
Length = 256
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 306 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIM-IGEDKLIHFSGVEMGQACTIV 364
D +G E L G TFD P + + IM +G L+ + T+
Sbjct: 34 DVEGAEALVEFAGRACYETFDKPNPRTASNAAYLRHIMEVGHTALLEHAN------ATMY 87
Query: 365 LRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDE 413
+RG S E R H + LSQ S G E+V+ +DE
Sbjct: 88 IRGISRSATHELVRHRHFSFSQLSQRFVHS------GESEVVVPTLIDE 130
>pdb|1ZO0|A Chain A, Nmr Structure Of Antizyme Isoform 1 From Rat
Length = 126
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 499 EAAEMILRVDEIITCAPRRREDR 521
E AE LR D + C P+ REDR
Sbjct: 68 EFAEEQLRADHVFICFPKNREDR 90
>pdb|1YVP|A Chain A, Ro Autoantigen Complexed With Rnas
pdb|1YVP|B Chain B, Ro Autoantigen Complexed With Rnas
pdb|1YVR|A Chain A, Ro Autoantigen
pdb|2I91|A Chain A, 60kda Ro Autoantigen In Complex With A Fragment Of
Misfolded Rna
pdb|2I91|B Chain B, 60kda Ro Autoantigen In Complex With A Fragment Of
Misfolded Rna
Length = 538
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 47 RGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKL 106
R +T+ I KSL D P +L ++ K+ D V +S V E L + L
Sbjct: 255 REHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTNEKLL 314
Query: 107 VAAKIHPMTII 117
A+IHP I+
Sbjct: 315 KKARIHPFHIL 325
>pdb|3GE9|A Chain A, A Structurally Atypical Thyx From Corynebacterium
Glutamicum Nchu 87078 Is Not Required For Thymidylate
Biosynthesis
Length = 255
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 306 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIM-IGEDKLIHFSGVEMGQACTIV 364
D +G E L G TFD P + + IM +G L+ + T+
Sbjct: 33 DVEGAEALVEFAGRACYETFDKPNPRTASNAAYLRHIMEVGHTALLEHAN------ATMY 86
Query: 365 LRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDE 413
+RG S E R H + LSQ S G E+V+ +DE
Sbjct: 87 IRGISRSATHELVRHRHFSFSQLSQRFVHS------GESEVVVPTLIDE 129
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 173 AVDAVMRLKGSTNL-ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVAN 231
AVD +RL TN E I I+ PG +K ++LD G+ + P + A L+ N
Sbjct: 190 AVDFDLRLSDFTNTNEEIDIVA-PGVGIKSTYLDSGYAELSGTAMAAP-HVAGALALIIN 247
Query: 232 TAMDTDK-----VKIYGARVR 247
A D K +IY VR
Sbjct: 248 LAEDAFKRSLSETEIYAQLVR 268
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 173 AVDAVMRLKGSTNL-ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVAN 231
AVD +RL TN E I I+ PG +K ++LD G+ + P + A L+ N
Sbjct: 208 AVDFDLRLSDFTNTNEEIDIVA-PGVGIKSTYLDSGYAELSGTAMAAP-HVAGALALIIN 265
Query: 232 TAMDTDK-----VKIYGARVR 247
A D K +IY VR
Sbjct: 266 LAEDAFKRSLSETEIYAQLVR 286
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 173 AVDAVMRLKGSTNL-ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVAN 231
AVD +RL TN E I I+ PG +K ++LD G+ + P + A L+ N
Sbjct: 208 AVDFDLRLSDFTNTNEEIDIVA-PGVGIKSTYLDSGYAELSGTAMAAP-HVAGALALIIN 265
Query: 232 TAMDTDK-----VKIYGARVR 247
A D K +IY VR
Sbjct: 266 LAEDAFKRSLSETEIYAQLVR 286
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 104 EKLVAAKIHPMTIISGFRMAAE---CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 160
+K+ AAK + + ++ R E DA KV NKE+ E F++DL K+A ++
Sbjct: 114 DKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDA 173
Query: 161 ILSQDKEHFGQLAVDAVMRLKG 182
+ + H + V ++ G
Sbjct: 174 FGTAHRAHSSXVGVKLNVKASG 195
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 104 EKLVAAKIHPMTIISGFRMAAE---CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 160
+K+ AAK + + ++ R E DA KV NKE+ E F++DL K+A ++
Sbjct: 113 DKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDA 172
Query: 161 ILSQDKEHFGQLAVDAVMRLKG 182
+ + H + V ++ G
Sbjct: 173 FGTAHRAHSSXVGVKLNVKASG 194
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 173 AVDAVMRLKGSTNL-ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVAN 231
AVD +RL TN E I I+ PG +K ++LD G+ + P + A L+ N
Sbjct: 208 AVDFDLRLSDFTNTNEEIDIVA-PGVGIKSTYLDSGYAELSGTAMAAP-HVAGALALIIN 265
Query: 232 TAMDTDK-----VKIYGARVR 247
A D K +IY VR
Sbjct: 266 LAEDAFKRSLSETEIYAQLVR 286
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 104 EKLVAAKIHPMTIISGFRMAAE---CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 160
+K+ AAK + + ++ R E DA KV NKE+ E F++DL K+A ++
Sbjct: 107 DKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDA 166
Query: 161 ILSQDKEHFGQLAVDAVMRLKG 182
+ + H + V ++ G
Sbjct: 167 FGTAHRAHSSMVGVKLNVKASG 188
>pdb|1DWU|A Chain A, Ribosomal Protein L1
pdb|1DWU|B Chain B, Ribosomal Protein L1
Length = 213
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 1 MGVERIFRDEANEEKGERARMAS--------FVGAMAIADLVKTTLGPKGMSTGRGREVT 52
MG+ I +DE EE G+ +MA F+ + LV TLGP G+ +
Sbjct: 75 MGLTVIRQDEL-EELGKNKKMAKKIANEHDFFIAQADMMPLVGKTLGPVLGPRGKMPQPV 133
Query: 53 VTNDGATIL-----KSLHI---DNPAAKVLVDISKVQDDEVGDGTTSVV 93
N T L K++ I D P VLV K+ D+E+ + +++
Sbjct: 134 PANANLTPLVERLKKTVLINTRDKPLFHVLVGNEKMSDEELAENIEAIL 182
>pdb|2ICS|A Chain A, Crystal Structure Of An Adenine Deaminase
Length = 379
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 254 AAEIEGAEKQKMREKVQKIIAHG-----INCFVNRQLIYNFPEELFADAGILAIEHADFD 308
AA I G+ K+ + + ++ G ++CF L Y++P+E+ G+ + A
Sbjct: 33 AATISGSAKETIHLEPGTYVSAGWIDDHVHCFEKXALYYDYPDEIGVKKGVTTVIDAGTT 92
Query: 309 GIERL 313
G E +
Sbjct: 93 GAENI 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,975,893
Number of Sequences: 62578
Number of extensions: 564362
Number of successful extensions: 1844
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 91
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)