Query 009923
Match_columns 522
No_of_seqs 137 out of 1499
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 18:56:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03336 TCP1_beta TCP-1 (CTT o 100.0 7E-109 1E-113 883.8 60.5 510 7-516 2-516 (517)
2 PTZ00212 T-complex protein 1 s 100.0 8E-109 2E-113 885.4 59.8 514 6-519 10-531 (533)
3 KOG0361 Chaperonin complex com 100.0 9E-111 2E-115 804.1 37.5 511 6-517 8-526 (543)
4 KOG0363 Chaperonin complex com 100.0 5E-109 1E-113 787.6 41.9 521 1-521 1-526 (527)
5 TIGR02341 chap_CCT_beta T-comp 100.0 3E-107 6E-112 870.2 60.2 512 6-517 2-518 (519)
6 TIGR02347 chap_CCT_zeta T-comp 100.0 3E-106 6E-111 862.4 59.5 508 6-517 4-529 (531)
7 TIGR02339 thermosome_arch ther 100.0 2E-106 5E-111 865.9 58.2 504 6-513 4-519 (519)
8 TIGR02344 chap_CCT_gamma T-com 100.0 3E-106 7E-111 866.0 59.2 507 6-516 4-524 (525)
9 cd03340 TCP1_eta TCP-1 (CTT or 100.0 6E-106 1E-110 863.3 58.5 508 6-514 4-520 (522)
10 cd03343 cpn60 cpn60 chaperonin 100.0 3E-105 8E-110 857.9 58.2 504 6-513 3-516 (517)
11 cd03335 TCP1_alpha TCP-1 (CTT 100.0 6E-105 1E-109 855.7 57.3 499 13-515 3-527 (527)
12 TIGR02342 chap_CCT_delta T-com 100.0 9E-105 2E-109 851.9 56.8 497 14-514 5-517 (517)
13 TIGR02345 chap_CCT_eta T-compl 100.0 1E-104 3E-109 851.2 57.3 507 6-514 6-520 (522)
14 TIGR02343 chap_CCT_epsi T-comp 100.0 2E-104 3E-109 851.0 56.6 506 6-513 13-531 (532)
15 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2E-104 4E-109 851.7 56.8 504 6-511 9-525 (526)
16 TIGR02346 chap_CCT_theta T-com 100.0 2E-103 4E-108 843.0 58.9 511 5-520 4-526 (531)
17 TIGR02340 chap_CCT_alpha T-com 100.0 6E-103 1E-107 841.4 59.1 503 12-518 6-534 (536)
18 cd03338 TCP1_delta TCP-1 (CTT 100.0 3E-103 7E-108 841.5 57.1 498 12-513 2-515 (515)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1E-101 2E-106 821.2 54.4 473 8-514 2-483 (484)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3E-100 7E-105 809.9 50.7 462 6-512 4-479 (480)
21 KOG0358 Chaperonin complex com 100.0 1E-100 2E-105 733.9 35.1 499 12-514 20-534 (534)
22 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.5E-97 6E-102 786.0 51.8 457 14-513 4-471 (472)
23 cd00309 chaperonin_type_I_II c 100.0 2.8E-96 6E-101 780.0 52.5 455 13-512 3-464 (464)
24 COG0459 GroL Chaperonin GroEL 100.0 1.8E-95 4E-100 768.0 48.3 499 10-517 3-517 (524)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1E-93 2.3E-98 767.7 48.2 479 30-515 1-485 (485)
26 PRK12849 groEL chaperonin GroE 100.0 1.6E-89 3.5E-94 732.5 51.0 455 13-517 5-526 (542)
27 PRK00013 groEL chaperonin GroE 100.0 1.7E-89 3.8E-94 732.2 50.9 457 13-517 5-527 (542)
28 KOG0364 Chaperonin complex com 100.0 2.6E-92 5.7E-97 687.3 26.5 509 7-519 8-526 (527)
29 KOG0362 Chaperonin complex com 100.0 1.3E-89 2.7E-94 679.3 42.9 510 3-520 10-527 (537)
30 PTZ00114 Heat shock protein 60 100.0 9.3E-89 2E-93 730.3 52.1 459 11-517 15-543 (555)
31 PRK12851 groEL chaperonin GroE 100.0 2E-88 4.4E-93 724.8 50.8 458 13-519 6-529 (541)
32 cd03344 GroEL GroEL_like type 100.0 8.2E-88 1.8E-92 717.8 49.4 450 13-512 3-519 (520)
33 KOG0360 Chaperonin complex com 100.0 6.3E-90 1.4E-94 676.8 29.6 504 11-519 12-541 (545)
34 PRK12850 groEL chaperonin GroE 100.0 1.7E-87 3.6E-92 718.2 50.5 459 13-520 6-530 (544)
35 PRK12852 groEL chaperonin GroE 100.0 4.4E-87 9.6E-92 716.7 50.6 456 13-517 6-528 (545)
36 TIGR02348 GroEL chaperonin Gro 100.0 9.3E-87 2E-91 711.1 50.3 453 13-515 4-523 (524)
37 CHL00093 groEL chaperonin GroE 100.0 1.9E-85 4E-90 701.8 47.1 457 13-516 5-527 (529)
38 PRK14104 chaperonin GroEL; Pro 100.0 1.5E-84 3.2E-89 694.9 50.4 457 13-518 6-529 (546)
39 PLN03167 Chaperonin-60 beta su 100.0 6E-84 1.3E-88 693.6 45.0 458 14-517 60-584 (600)
40 KOG0359 Chaperonin complex com 100.0 2.9E-81 6.3E-86 609.2 29.6 502 6-516 5-517 (520)
41 KOG0357 Chaperonin complex com 100.0 3.7E-68 8.1E-73 503.2 23.0 371 11-515 21-397 (400)
42 KOG0356 Mitochondrial chaperon 100.0 6.5E-50 1.4E-54 403.0 33.1 453 12-518 18-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 1.9E-39 4.1E-44 317.0 25.8 227 163-397 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 1.2E-35 2.6E-40 282.7 23.2 204 147-393 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 5.4E-21 1.2E-25 211.9 15.5 233 163-403 331-576 (1598)
46 PF02579 Nitro_FeMo-Co: Dinitr 51.8 41 0.00089 26.7 5.6 44 268-313 45-88 (94)
47 cd00851 MTH1175 This uncharact 51.1 56 0.0012 26.4 6.4 45 267-313 54-98 (103)
48 COG1433 Uncharacterized conser 48.5 66 0.0014 27.5 6.4 39 268-307 57-95 (121)
49 COG0466 Lon ATP-dependent Lon 46.9 2.3E+02 0.005 31.9 11.6 159 222-392 464-652 (782)
50 cd00562 NifX_NifB This CD repr 39.9 98 0.0021 24.8 6.2 38 268-306 53-90 (102)
51 smart00574 POX domain associat 35.3 1E+02 0.0023 26.9 5.6 46 371-416 84-129 (140)
52 COG3962 Acetolactate synthase 34.8 37 0.0008 35.8 3.2 40 377-417 216-255 (617)
53 PF07526 POX: Associated with 29.8 1.2E+02 0.0027 26.6 5.3 46 371-416 84-129 (140)
54 PF02796 HTH_7: Helix-turn-hel 24.2 87 0.0019 21.4 2.7 34 100-133 11-44 (45)
55 cd01143 YvrC Periplasmic bindi 24.0 2.1E+02 0.0045 25.9 6.2 51 269-319 53-110 (195)
56 PF07278 DUF1441: Protein of u 21.2 1.8E+02 0.0038 26.1 4.6 66 368-449 61-126 (152)
No 1
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.5e-109 Score=883.77 Aligned_cols=510 Identities=76% Similarity=1.112 Sum_probs=488.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC----CCeEEecChHHHhhhccccChHHHHHHHHHhhc
Q 009923 7 FRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG----REVTVTNDGATILKSLHIDNPAAKVLVDISKVQ 81 (522)
Q Consensus 7 ~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~----g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~ 81 (522)
++++.+..+|+++++.|+.||..++++++|||||+||+|| ++ |+++|||||+||+++|+++||+++|+++++++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 4677788999999999999999999999999999999999 43 899999999999999999999999999999999
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccc
Q 009923 82 DDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKI 161 (522)
Q Consensus 82 ~~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~ 161 (522)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.+++.|+++++|++.+.+.+++.|+++++|+++||+
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~ 161 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI 161 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999998854322235789999999999999
Q ss_pred cchhhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeecccccccccc
Q 009923 162 LSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKI 241 (522)
Q Consensus 162 ~~~~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~~~~~~~ 241 (522)
.+.++++|++++++|+..++..++.++|++++++|++++||++++|+++++++.+.||++++||||++++++|++++++.
T Consensus 162 ~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~ 241 (517)
T cd03336 162 LTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKI 241 (517)
T ss_pred cchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccc
Confidence 99999999999999999998788889999999999999999999999999987677899999999999999999999887
Q ss_pred cCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCee
Q 009923 242 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEI 321 (522)
Q Consensus 242 ~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~i 321 (522)
+++++.+++++++..++..|+++++++++.|++.++++++++++|+|.+++||.++||++++++++++|+|||++|||++
T Consensus 242 ~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~i 321 (517)
T cd03336 242 FGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEI 321 (517)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCC
Q 009923 322 ASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGG 401 (522)
Q Consensus 322 i~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG 401 (522)
+++++++++.++|+|+.|++..+|+++|++|++|+++++|||+|||+|+.+++|.+|+++||+++++++++++++|||||
T Consensus 322 i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG 401 (517)
T cd03336 322 ASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGG 401 (517)
T ss_pred ecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccC
Q 009923 402 WPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAEL 481 (522)
Q Consensus 402 ~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~ 481 (522)
++|++|+.+|+++++..++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++.||++.
T Consensus 402 a~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~ 481 (517)
T cd03336 402 CSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKEL 481 (517)
T ss_pred HHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhc
Confidence 99999999999999888999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCC
Q 009923 482 GISESFKVKQAVLLSATEAAEMILRVDEIITCAPR 516 (522)
Q Consensus 482 gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~ 516 (522)
|||||+.+|+++|+.|+|+|++||+||++|..+|+
T Consensus 482 gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 516 (517)
T cd03336 482 GITESFKVKRQVLLSASEAAEMILRVDDIIKCAPR 516 (517)
T ss_pred CceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence 99999999999999999999999999999999874
No 2
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=7.8e-109 Score=885.39 Aligned_cols=514 Identities=71% Similarity=1.063 Sum_probs=492.9
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC-------CCeEEecChHHHhhhccccChHHHHHHHH
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG-------REVTVTNDGATILKSLHIDNPAAKVLVDI 77 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~-------g~~~iTnDg~tIlk~l~~~hP~a~ll~~~ 77 (522)
+++++++..+|++++..|++||..++++++|||||+||+|| ++ |+++|||||+|||++|+++||+++|++++
T Consensus 10 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~~~ 89 (533)
T PTZ00212 10 VLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDI 89 (533)
T ss_pred HhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHHHH
Confidence 56888889999999999999999999999999999999999 43 89999999999999999999999999999
Q ss_pred HhhcccccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHh
Q 009923 78 SKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTL 157 (522)
Q Consensus 78 ~~~~~~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l 157 (522)
|++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|.+.+++.+.+.|.++++|++
T Consensus 90 a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l 169 (533)
T PTZ00212 90 SKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTL 169 (533)
T ss_pred HHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999986543334578999999999
Q ss_pred hccccchhhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeecccccc
Q 009923 158 SSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTD 237 (522)
Q Consensus 158 ~sk~~~~~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~~~ 237 (522)
+||+.+.+.+.|++++++|+..+...+++++|++++++||+++||++++|+++++++.+.||++++||||++++++|+++
T Consensus 170 ~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le~~ 249 (533)
T PTZ00212 170 SSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMDTD 249 (533)
T ss_pred cccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCCCC
Confidence 99999999999999999999999777889999999999999999999999999998877899999999999999999999
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHh
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVT 317 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~t 317 (522)
+++.+++++.+++++++..+++.|+++++++++.|++.++++++++++|++.+++||.++||++++|+++++++|||++|
T Consensus 250 k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~t 329 (533)
T PTZ00212 250 KIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAAL 329 (533)
T ss_pred cccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHh
Confidence 99876678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccc
Q 009923 318 GGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVL 397 (522)
Q Consensus 318 Ga~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 397 (522)
||+++++++++++.++|+|+.|++..+|+++|++|++|+.+++|||+|||+|+.+++|.||+++||+++++++++++++|
T Consensus 330 Ga~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vV 409 (533)
T PTZ00212 330 GAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVV 409 (533)
T ss_pred CCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccc
Q 009923 398 FGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGD 477 (522)
Q Consensus 398 pGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d 477 (522)
|||||+|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++.|
T Consensus 410 pGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d 489 (533)
T PTZ00212 410 LGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGD 489 (533)
T ss_pred eCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccc
Confidence 99999999999999999988899999999999999999999999999999999999999999888889999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCC
Q 009923 478 MAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 519 (522)
Q Consensus 478 ~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~~~ 519 (522)
|++.|||||+.+|+++|+.|+|+|++|||||++|...|+.++
T Consensus 490 ~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~~ 531 (533)
T PTZ00212 490 MKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPRQRE 531 (533)
T ss_pred hhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCcccC
Confidence 999999999999999999999999999999999999875544
No 3
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-111 Score=804.08 Aligned_cols=511 Identities=35% Similarity=0.551 Sum_probs=492.8
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcc
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD 82 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~ 82 (522)
+|+||++.++|.-++-+|+.||.++++.++|||||+|+||+ ++ |+++|||||+||||.|++-||+++.|++++++||
T Consensus 8 ~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia~sQD 87 (543)
T KOG0361|consen 8 LLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIARSQD 87 (543)
T ss_pred EeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHhhcc
Confidence 57999999999999999999999999999999999999999 66 9999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCc-hhhhHHHHHHHHHHHhhccc
Q 009923 83 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKEN-AETFKSDLMKIAMTTLSSKI 161 (522)
Q Consensus 83 ~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~-~~~~~~~l~~i~~t~l~sk~ 161 (522)
.++||||||||+|++++|+++-.+++.|+||..|+++|++|...|++.++++++.++.. ...-++-|++.+.|+++||+
T Consensus 88 aEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKl 167 (543)
T KOG0361|consen 88 AEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKL 167 (543)
T ss_pred ccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999988743 33346779999999999999
Q ss_pred cchhhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCC----CCccccCcceEEeecccccc
Q 009923 162 LSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIG----QPKRIENAKILVANTAMDTD 237 (522)
Q Consensus 162 ~~~~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~----~~~~i~~~rIll~~~~L~~~ 237 (522)
+.+..++|+++++||+..++...+.+.|-|.|++||+++||.+++|+-|.+.|+|. +|+++.||||+++|..||.+
T Consensus 168 I~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElK 247 (543)
T KOG0361|consen 168 IRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELK 247 (543)
T ss_pred hhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeec
Confidence 99999999999999999998778889999999999999999999999999999763 79999999999999999985
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHh
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVT 317 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~t 317 (522)
.. ..++++.+.++++++.....||..+++++++|...|+|+|++...|.|++.+||++++|+|..||+.+||.|+..++
T Consensus 248 aE-kdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~ac 326 (543)
T KOG0361|consen 248 AE-KDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQAC 326 (543)
T ss_pred cc-ccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhc
Confidence 54 44589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccc
Q 009923 318 GGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVL 397 (522)
Q Consensus 318 Ga~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 397 (522)
|++|.++..++.+..+|.|..|+++++|++||-+|+||+..+.||++|||+.++.++|.+|++|||++++|.++++..||
T Consensus 327 GGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vV 406 (543)
T KOG0361|consen 327 GGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVV 406 (543)
T ss_pred CcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccc
Q 009923 398 FGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGD 477 (522)
Q Consensus 398 pGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d 477 (522)
+|||++||.+|+.|++++..+++++|+.+.+|++|||.|||+||+|+|+|..+++++||..|++|..|+|+|..++.+.|
T Consensus 407 aGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~d 486 (543)
T KOG0361|consen 407 AGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIAD 486 (543)
T ss_pred eCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCC
Q 009923 478 MAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 517 (522)
Q Consensus 478 ~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~ 517 (522)
+++.+||||..||.+++..|+|+|++||.+|+.|.+.+..
T Consensus 487 n~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~ 526 (543)
T KOG0361|consen 487 NFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQ 526 (543)
T ss_pred HHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCccc
Confidence 9999999999999999999999999999999999987754
No 4
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-109 Score=787.61 Aligned_cols=521 Identities=74% Similarity=1.066 Sum_probs=509.7
Q ss_pred CcccccccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC----CCeEEecChHHHhhhccccChHHHHHH
Q 009923 1 MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG----REVTVTNDGATILKSLHIDNPAAKVLV 75 (522)
Q Consensus 1 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~----g~~~iTnDg~tIlk~l~~~hP~a~ll~ 75 (522)
|+...++++++.+++|++||.+.+.|+-.+.++|+|||||+||+|+ +. |.+.+||||+||||++.+.+|+|++|+
T Consensus 1 m~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv 80 (527)
T KOG0363|consen 1 MNPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLV 80 (527)
T ss_pred CChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhhee
Confidence 6655589999999999999999999999999999999999999999 54 789999999999999999999999999
Q ss_pred HHHhhcccccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHH
Q 009923 76 DISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMT 155 (522)
Q Consensus 76 ~~~~~~~~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t 155 (522)
+.++-||.++|||||||++|+++||++|.+|+.+.+||+.|++||+.|.+.|++.|.+.++....+.+.|+++|+++++|
T Consensus 81 ~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 81 DISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIART 160 (527)
T ss_pred ccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887888899999999999
Q ss_pred HhhccccchhhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeecccc
Q 009923 156 TLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD 235 (522)
Q Consensus 156 ~l~sk~~~~~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~ 235 (522)
.|+||+.+++.++|++|+++|+.++.+..+++.|+|+|+.||+++||++.+|+++++.+...+|+.++|+||++.|.+++
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT~mD 240 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANTPMD 240 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCCCCcccccccceEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred cccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHH
Q 009923 236 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 315 (522)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~ 315 (522)
.++.+.+++.+.+++...+..++..|++.++.++++|.+.|+|+.++..-|.++..++|.+.||+++++.+++-+||++.
T Consensus 241 tDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLal 320 (527)
T KOG0363|consen 241 TDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLAL 320 (527)
T ss_pred ccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCc
Q 009923 316 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSR 395 (522)
Q Consensus 316 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 395 (522)
.||+.|++.+++++...+|.|+.+++..+|++++++|+||+.+..|||+|||+|++++||.+|++|||||++...+++++
T Consensus 321 vtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esr 400 (527)
T KOG0363|consen 321 VTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESR 400 (527)
T ss_pred cccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcc
Q 009923 396 VLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV 475 (522)
Q Consensus 396 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~ 475 (522)
++.||||.||.+|..+.+++.+.++++..++.+|++||..+|.+|+.|+|+|+.+++++||+.|.+|...+|+|+.+|++
T Consensus 401 vv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i 480 (527)
T KOG0363|consen 401 VVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEI 480 (527)
T ss_pred eeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCC
Q 009923 476 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDR 521 (522)
Q Consensus 476 ~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~~~~~ 521 (522)
.||.+.||+|++.+|...+..|.|++.||||+|.||.+.|+++.++
T Consensus 481 ~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~~ 526 (527)
T KOG0363|consen 481 GDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERERD 526 (527)
T ss_pred hhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcccccC
Confidence 9999999999999999999999999999999999999999988764
No 5
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-107 Score=870.18 Aligned_cols=512 Identities=70% Similarity=1.046 Sum_probs=488.6
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC----CCeEEecChHHHhhhccccChHHHHHHHHHhh
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG----REVTVTNDGATILKSLHIDNPAAKVLVDISKV 80 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~----g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~ 80 (522)
+++++.+..+|++++.+|++|+.+++++++|||||+||+|| ++ |+++|||||+|||++|+++||+++|++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999 53 89999999999999999999999999999999
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhcc
Q 009923 81 QDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 160 (522)
Q Consensus 81 ~~~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 160 (522)
|++++||||||+|+|+++||++|.+|+++|+||+.|++||+.|++.+++.|+++++|++.+.+.+++.|.++++|+++||
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~sk 161 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSK 161 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999986432223578999999999999
Q ss_pred ccchhhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeeccccccccc
Q 009923 161 ILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVK 240 (522)
Q Consensus 161 ~~~~~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~~~~~~ 240 (522)
+.+.+.+.|++++++|+..+....+.++|++++++|+++++|++++|+++++.+.+.+|+.++||+|++++++|++++++
T Consensus 162 i~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~~ 241 (519)
T TIGR02341 162 ILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKVK 241 (519)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCccc
Confidence 99999999999999999998666678889999999999999999999999999877899999999999999999998887
Q ss_pred ccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCe
Q 009923 241 IYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGE 320 (522)
Q Consensus 241 ~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 320 (522)
.+++++.+++++++..++..|+++++++++.|++.++++++++++|++.+++||.+.+|++++++++.+|+|||++|||+
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ 321 (519)
T TIGR02341 242 VFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGE 321 (519)
T ss_pred cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCE
Confidence 64578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCC
Q 009923 321 IASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGG 400 (522)
Q Consensus 321 ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGG 400 (522)
++++++++++.++|+|+.|++..+|+++|++|++|+.++.|||+|||+|+.+++|.+|+++||+++++++++++++||||
T Consensus 322 ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGG 401 (519)
T TIGR02341 322 IVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGG 401 (519)
T ss_pred EecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCccccccc
Q 009923 401 GWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAE 480 (522)
Q Consensus 401 G~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~ 480 (522)
||+|++|+.+|+++++..++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.++..++|+|+.+|++.||++
T Consensus 402 Ga~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~ 481 (519)
T TIGR02341 402 GCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRK 481 (519)
T ss_pred CHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhh
Confidence 99999999999999888899999999999999999999999999999999999999999888788999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCC
Q 009923 481 LGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 517 (522)
Q Consensus 481 ~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~ 517 (522)
.|||||+.+|+++++.|+|+|++||+||++|.++|+.
T Consensus 482 ~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 518 (519)
T TIGR02341 482 LGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPRA 518 (519)
T ss_pred ccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCC
Confidence 9999999999999999999999999999999998853
No 6
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-106 Score=862.44 Aligned_cols=508 Identities=29% Similarity=0.472 Sum_probs=482.7
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcc
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD 82 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~ 82 (522)
+++++.+..+|.+++..|+.||.+++++++|||||+||+|| ++ |+++|||||+||+++|+++||+++|++++|++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd 83 (531)
T TIGR02347 4 LLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQD 83 (531)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhh
Confidence 66888889999999999999999999999999999999999 76 9999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccC-CchhhhHHHHHHHHHHHhhccc
Q 009923 83 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNK-ENAETFKSDLMKIAMTTLSSKI 161 (522)
Q Consensus 83 ~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~-~~~~~~~~~l~~i~~t~l~sk~ 161 (522)
+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|++++++.. ..+ .+.|.++++|+++||+
T Consensus 84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~l~~ia~tsl~sK~ 160 (531)
T TIGR02347 84 DITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVD---RELLLNVARTSLRTKL 160 (531)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC---HHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999997753 211 4789999999999999
Q ss_pred cchhhhHHHHHHHHHHHhhcCC---CCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeecccccc
Q 009923 162 LSQDKEHFGQLAVDAVMRLKGS---TNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMDTD 237 (522)
Q Consensus 162 ~~~~~~~la~lv~~a~~~~~~~---~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L~~~ 237 (522)
.++++++|++++++|+..++++ +++++|++++++||+.+||++++|++|++++.+ .||+++.||+|++++++|+++
T Consensus 161 ~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~ 240 (531)
T TIGR02347 161 PIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYE 240 (531)
T ss_pred chhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCC
Confidence 9999999999999999998653 567789999999999999999999999999754 589999999999999999999
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Cc---EEEeCCCCCchHHHHHHHcCCeEEecCCh
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHG-------IN---CFVNRQLIYNFPEELFADAGILAIEHADF 307 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~-------v~---lVl~~~~i~~~~~~~l~~~~I~~i~~v~~ 307 (522)
+++.. ..+.+.+++++..+...|++++++++++|++.+ ++ +|+|+++|+|.+++||.++||++++|+++
T Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~ 319 (531)
T TIGR02347 241 KTEVN-SGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKR 319 (531)
T ss_pred ccccC-ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCH
Confidence 87765 678999999999999999999999999999866 25 99999999999999999999999999999
Q ss_pred hhHHHHHHHhCCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHH
Q 009923 308 DGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVL 387 (522)
Q Consensus 308 ~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~ 387 (522)
++|+|||++|||+++++++++++.++|+|+.|++..+|+++|++|++|.+++.|||+|||+|+.+++|++|+++||++++
T Consensus 320 ~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~ 399 (531)
T TIGR02347 320 RNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAV 399 (531)
T ss_pred HHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCcee
Q 009923 388 SQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAG 467 (522)
Q Consensus 388 ~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~G 467 (522)
+++++++++||||||+|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|
T Consensus 400 ~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~G 479 (531)
T TIGR02347 400 KNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVG 479 (531)
T ss_pred HHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCcee
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999987778899
Q ss_pred EEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCC
Q 009923 468 IDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 517 (522)
Q Consensus 468 id~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~ 517 (522)
+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|+.
T Consensus 480 id~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 480 VDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred eeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999988764
No 7
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.4e-106 Score=865.87 Aligned_cols=504 Identities=41% Similarity=0.629 Sum_probs=482.4
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcc
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD 82 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~ 82 (522)
+++++.+..+|.+++.+|++||..++++++|||||+||+|| ++ |+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd 83 (519)
T TIGR02339 4 ILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 83 (519)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 56888889999999999999999999999999999999999 66 9999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhcccc
Q 009923 83 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKIL 162 (522)
Q Consensus 83 ~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~ 162 (522)
+++||||||+++|+++||+++.+|+++|+||..|++||+.|++.+++.|+++++|++..+ .+.|.++++|+++||+.
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~---~~~L~~ia~tsl~sk~~ 160 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPED---RDLLKKVAETSLTGKAS 160 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCccc---HHHHHHHHHhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999986432 46799999999999999
Q ss_pred -chhhhHHHHHHHHHHHhhcC-------CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeecc
Q 009923 163 -SQDKEHFGQLAVDAVMRLKG-------STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTA 233 (522)
Q Consensus 163 -~~~~~~la~lv~~a~~~~~~-------~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~ 233 (522)
+.+.++|++++++|+..+++ .+|+++|+|++++||+++||++++|++|++++.+ .||++++||||++++++
T Consensus 161 ~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~ 240 (519)
T TIGR02339 161 AEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAP 240 (519)
T ss_pred cchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEecc
Confidence 79999999999999998863 3677899999999999999999999999999754 58999999999999999
Q ss_pred cccccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHH
Q 009923 234 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERL 313 (522)
Q Consensus 234 L~~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~i 313 (522)
|++++++.. .++.+++++++.++.+.|+++++++++.|.+.++++|+++++|++.+++||.++||++++++++++|+||
T Consensus 241 Le~~~~~~~-~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rI 319 (519)
T TIGR02339 241 LEVEKTEID-AKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKL 319 (519)
T ss_pred ccccccccc-eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHH
Confidence 999998875 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhC
Q 009923 314 ALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVND 393 (522)
Q Consensus 314 a~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 393 (522)
|++|||+++++++++++.++|+|++|++..+|+++|++|++|..+..|||+|||||+.+++|.+|+++||++++++++++
T Consensus 320 a~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~ 399 (519)
T TIGR02339 320 ARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALED 399 (519)
T ss_pred HHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCC
Q 009923 394 SRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISG 473 (522)
Q Consensus 394 ~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g 473 (522)
+++|||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|
T Consensus 400 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g 479 (519)
T TIGR02339 400 GKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTG 479 (519)
T ss_pred CCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999987778999999999
Q ss_pred cccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhc
Q 009923 474 SVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITC 513 (522)
Q Consensus 474 ~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~ 513 (522)
++.||++.|||||+.+|+++++.|+|+|++||+||++|.+
T Consensus 480 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 480 EIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred CccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 9999999999999999999999999999999999999853
No 8
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.2e-106 Score=866.04 Aligned_cols=507 Identities=31% Similarity=0.497 Sum_probs=482.3
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcc
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD 82 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~ 82 (522)
+++++.+..+|++++..|++||..++++++|||||+||+|| ++ |+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~ 83 (525)
T TIGR02344 4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (525)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence 45777789999999999999999999999999999999999 76 9999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhcccc
Q 009923 83 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKIL 162 (522)
Q Consensus 83 ~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~ 162 (522)
+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.+++.|+++++|++..+ .+.|.++++|+++||+.
T Consensus 84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~---~~~l~~i~~t~l~sk~~ 160 (525)
T TIGR02344 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND---DAAMLKLIQSCIGTKFV 160 (525)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC---HHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999986532 36799999999999999
Q ss_pred chhhhHHHHHHHHHHHhhcCC-------CCCc-CeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeecc
Q 009923 163 SQDKEHFGQLAVDAVMRLKGS-------TNLE-SIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTA 233 (522)
Q Consensus 163 ~~~~~~la~lv~~a~~~~~~~-------~~~~-~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~ 233 (522)
++|.+.|++++++|+..++.+ +|++ +|+|.+++||+++||++++|++|++++.+ .||++++||+|++++++
T Consensus 161 ~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~ 240 (525)
T TIGR02344 161 SRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCP 240 (525)
T ss_pred hhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEecc
Confidence 999999999999999988642 2333 48999999999999999999999998754 68999999999999999
Q ss_pred cccccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHH
Q 009923 234 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERL 313 (522)
Q Consensus 234 L~~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~i 313 (522)
|++++++.. .++.+++++++.++.+.|++++++++++|.+.+++||+++++|++.+++||.++||++++++++++|+||
T Consensus 241 Le~~~~~~~-~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerI 319 (525)
T TIGR02344 241 LEYKKGESQ-TNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRI 319 (525)
T ss_pred ccccccccc-ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHH
Confidence 999988775 6889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccccCCCCCCCccc-cceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhh
Q 009923 314 ALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVN 392 (522)
Q Consensus 314 a~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 392 (522)
|++|||++++++++++++++|+ |+.|++..+|+++|++|++|+++++|||+|||+|+.+++|+||+++||+++++++++
T Consensus 320 a~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~ 399 (525)
T TIGR02344 320 ARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLL 399 (525)
T ss_pred HHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 999999999999999999999899999999999999999999999999999999999
Q ss_pred CCccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcC-CCceeEEcC
Q 009923 393 DSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE-GCPAGIDVI 471 (522)
Q Consensus 393 ~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-~~~~Gid~~ 471 (522)
++++||||||+|++||.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.++ +.++|+|+.
T Consensus 400 ~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~ 479 (525)
T TIGR02344 400 EPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGE 479 (525)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECC
Confidence 9999999999999999999999888999999999999999999999999999999999999999999876 678999999
Q ss_pred CCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCC
Q 009923 472 SGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPR 516 (522)
Q Consensus 472 ~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~ 516 (522)
+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.+.|+
T Consensus 480 ~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 524 (525)
T TIGR02344 480 TGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKK 524 (525)
T ss_pred CCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC
Confidence 999999999999999999999999999999999999999988774
No 9
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.1e-106 Score=863.34 Aligned_cols=508 Identities=39% Similarity=0.587 Sum_probs=485.0
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcc
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD 82 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~ 82 (522)
+++++++..+|.+++.+|+.||..++++++|||||+||+|| ++ |+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~ 83 (522)
T cd03340 4 LLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQD 83 (522)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhH
Confidence 56888889999999999999999999999999999999999 66 9999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCch-hhhHHHHHHHHHHHhhccc
Q 009923 83 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENA-ETFKSDLMKIAMTTLSSKI 161 (522)
Q Consensus 83 ~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~-~~~~~~l~~i~~t~l~sk~ 161 (522)
+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++..+ +...+.|.++++|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~ 163 (522)
T cd03340 84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKL 163 (522)
T ss_pred hHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999999999999999999999999886431 1224679999999999999
Q ss_pred cchhhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC----CCCccccCcceEEeecccccc
Q 009923 162 LSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI----GQPKRIENAKILVANTAMDTD 237 (522)
Q Consensus 162 ~~~~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~----~~~~~i~~~rIll~~~~L~~~ 237 (522)
.+.+.++|++++++|+..++++++.++|+|++++||+++||++++|++|++++.+ .+|+.++||+|++++++|+++
T Consensus 164 ~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 243 (522)
T cd03340 164 IASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELK 243 (522)
T ss_pred chhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCC
Confidence 9999999999999999999888899999999999999999999999999998753 368999999999999999998
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHh
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVT 317 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~t 317 (522)
+++.. .++.+++++++..+.+.|+++++++++.|++.|+++|+++++|+|.+++||.++||++++++++++|+|||++|
T Consensus 244 ~~~~~-~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~t 322 (522)
T cd03340 244 AEKDN-AEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQAT 322 (522)
T ss_pred ccccc-eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHH
Confidence 87764 67889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccc
Q 009923 318 GGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVL 397 (522)
Q Consensus 318 Ga~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 397 (522)
||+++++++++++.++|+|+.|++..+|+++|++|++|+.++.|||+|||+++.+++|.+|+++||+++++++++++++|
T Consensus 323 Ga~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vv 402 (522)
T cd03340 323 GGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVV 402 (522)
T ss_pred CCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCC-CceeEEcCCCccc
Q 009923 398 FGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG-CPAGIDVISGSVG 476 (522)
Q Consensus 398 pGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~-~~~Gid~~~g~~~ 476 (522)
|||||+|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++ .++|+|+.+|++.
T Consensus 403 pGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~ 482 (522)
T cd03340 403 AGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIA 482 (522)
T ss_pred ECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCccc
Confidence 999999999999999998888999999999999999999999999999999999999999998776 7899999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcC
Q 009923 477 DMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA 514 (522)
Q Consensus 477 d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~ 514 (522)
||++.|||||+.+|+++++.|+|+|++||+||++|.++
T Consensus 483 d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~ 520 (522)
T cd03340 483 DNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNP 520 (522)
T ss_pred chhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence 99999999999999999999999999999999999774
No 10
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.5e-105 Score=857.92 Aligned_cols=504 Identities=42% Similarity=0.650 Sum_probs=482.4
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcc
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD 82 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~ 82 (522)
+++++.+...|.+++..|++||..+++++++||||+|++|| .+ |+++|||||+||+++|+++||+++|+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999 66 9999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhcccc
Q 009923 83 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKIL 162 (522)
Q Consensus 83 ~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~ 162 (522)
+++||||||+++|+++|++++.+++++|+||..|++||++|.+.+++.|+++++|++.++ .+.+.++++|+++||+.
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~---~~~l~~va~ts~~sk~~ 159 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDD---KDTLRKIAKTSLTGKGA 159 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCC---HHHHHHHHHHhhcccch
Confidence 999999999999999999999999999999999999999999999999999999986322 46899999999999999
Q ss_pred chhhhHHHHHHHHHHHhhcC------CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeecccc
Q 009923 163 SQDKEHFGQLAVDAVMRLKG------STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMD 235 (522)
Q Consensus 163 ~~~~~~la~lv~~a~~~~~~------~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L~ 235 (522)
+.+.++|++++++|+..+++ .+++++|+|++++||++++|++++|++|++++.+ .||+.++||||++++++|+
T Consensus 160 ~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le 239 (517)
T cd03343 160 EAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLE 239 (517)
T ss_pred hhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEecccc
Confidence 99999999999999998853 3567789999999999999999999999999754 5899999999999999999
Q ss_pred cccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHH
Q 009923 236 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 315 (522)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~ 315 (522)
+++++.. +++.+++.+++.++.+.|+++++++++.|.+.++++|+++++|++.+++||.++||++++++++++|+|||+
T Consensus 240 ~~k~~~~-~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~ 318 (517)
T cd03343 240 VKKTEID-AKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLAR 318 (517)
T ss_pred CCccccc-eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHH
Confidence 9998875 778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCc
Q 009923 316 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSR 395 (522)
Q Consensus 316 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 395 (522)
+|||+++++++++++.++|+|+.|++.++|+++|++|++|.+++.|||+|||||+.+++|++|+++||++++|+++++++
T Consensus 319 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~ 398 (517)
T cd03343 319 ATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGK 398 (517)
T ss_pred HhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcc
Q 009923 396 VLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV 475 (522)
Q Consensus 396 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~ 475 (522)
+|||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++
T Consensus 399 vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~ 478 (517)
T cd03343 399 VVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEV 478 (517)
T ss_pred eeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCc
Confidence 99999999999999999998888999999999999999999999999999999999999999998777889999999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhc
Q 009923 476 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITC 513 (522)
Q Consensus 476 ~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~ 513 (522)
.||++.|||||+.+|+++|+.|+|+|++||+||++|+.
T Consensus 479 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 479 VDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred cchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 99999999999999999999999999999999999965
No 11
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.2e-105 Score=855.71 Aligned_cols=499 Identities=38% Similarity=0.585 Sum_probs=472.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCCCc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGT 89 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGt 89 (522)
..+|++++..|++||.++++++++||||+||+|| ++ |+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 5678899999999999999999999999999999 66 99999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhh-cccccCCchhhhHHHHHHHHHHHhhccccchhhhH
Q 009923 90 TSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQ-KVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEH 168 (522)
Q Consensus 90 ts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ 168 (522)
||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|++ +++|++..+ .+.|.++++|+++||+.+.+.++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~l~~ia~tsl~sK~~~~~~~~ 159 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLG---KESLINVAKTSMSSKIIGADSDF 159 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccC---HHHHHHHHHHHhcccccchhHHH
Confidence 99999999999999999999999999999999999999999996 888886321 46799999999999999888999
Q ss_pred HHHHHHHHHHhhc---C----CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeeccccccccc
Q 009923 169 FGQLAVDAVMRLK---G----STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMDTDKVK 240 (522)
Q Consensus 169 la~lv~~a~~~~~---~----~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L~~~~~~ 240 (522)
|++++++|+..++ . .+++++|+|++++||++++|++++|++|++++.+ .||+.++||||++++++|++++++
T Consensus 160 ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~ 239 (527)
T cd03335 160 FANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMK 239 (527)
T ss_pred HHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccc
Confidence 9999999999884 1 2677899999999999999999999999998754 689999999999999999998877
Q ss_pred ccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCe
Q 009923 241 IYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGE 320 (522)
Q Consensus 241 ~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ 320 (522)
.. .++.++++++++.+.+.|++++++++++|.+.|+++|+++++|++.+++||.++||++++|+++++|+|||++|||+
T Consensus 240 ~~-~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ 318 (527)
T cd03335 240 LG-VQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGAT 318 (527)
T ss_pred cc-eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCE
Confidence 64 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCC------CCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCC
Q 009923 321 IASTFDNPE------SVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDS 394 (522)
Q Consensus 321 ii~~~~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~ 394 (522)
+++++++++ +.++|+|++|++.++++++|++|++|.++++|||+|||+|+.+++|++|+++||+++++++++++
T Consensus 319 ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~ 398 (527)
T cd03335 319 LVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESN 398 (527)
T ss_pred EecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999986553 34799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcC--------CCce
Q 009923 395 RVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE--------GCPA 466 (522)
Q Consensus 395 ~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~--------~~~~ 466 (522)
++|||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++ ++++
T Consensus 399 ~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~ 478 (527)
T cd03335 399 SVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWY 478 (527)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceE
Confidence 99999999999999999999988999999999999999999999999999999999999999999776 4579
Q ss_pred eEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCC
Q 009923 467 GIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAP 515 (522)
Q Consensus 467 Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~ 515 (522)
|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|.+.|
T Consensus 479 Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 479 GLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred eEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 9999999999999999999999999999999999999999999998765
No 12
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.8e-105 Score=851.90 Aligned_cols=497 Identities=36% Similarity=0.561 Sum_probs=474.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCCCch
Q 009923 14 EKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTT 90 (522)
Q Consensus 14 ~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGtt 90 (522)
..+.+++.+|+.||..+++++++||||+||+|| ++ |+++|||||+|||++|+++||+++|++++|++|++++|||||
T Consensus 5 ~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTt 84 (517)
T TIGR02342 5 DKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTT 84 (517)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcc
Confidence 567778899999999999999999999999999 66 999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchhhhHHH
Q 009923 91 SVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFG 170 (522)
Q Consensus 91 s~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~la 170 (522)
|+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++.++ .+.|.++++|+++||+.+.+.++|+
T Consensus 85 t~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~---~~~l~~va~tsl~sK~~~~~~~~ls 161 (517)
T TIGR02342 85 SVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSD---REILIKSATTSLSSKVVSQYSSLLA 161 (517)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccC---HHHHHHHHHHHhccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999986422 4679999999999999999999999
Q ss_pred HHHHHHHHhhcC-----CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC--CCCccccCcceEEeecccccccccccC
Q 009923 171 QLAVDAVMRLKG-----STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI--GQPKRIENAKILVANTAMDTDKVKIYG 243 (522)
Q Consensus 171 ~lv~~a~~~~~~-----~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~--~~~~~i~~~rIll~~~~L~~~~~~~~~ 243 (522)
+++++|+..++. .+++++|+|++++||++++|++++|++|++++.+ +||++++||||++++++|++++++..
T Consensus 162 ~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~- 240 (517)
T TIGR02342 162 PLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDME- 240 (517)
T ss_pred HHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCccccc-
Confidence 999999998864 4678899999999999999999999999999865 68999999999999999999887764
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC-----CchHHHHHHHcCCeEEecCChhhHHHHHHHhC
Q 009923 244 ARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLI-----YNFPEELFADAGILAIEHADFDGIERLALVTG 318 (522)
Q Consensus 244 ~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i-----~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tG 318 (522)
.++.+.+++++..+.+.|+++++.++++|.+.|+++|+++++| ++.+++||.++||++++++++++|+|||++||
T Consensus 241 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tG 320 (517)
T TIGR02342 241 NQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIG 320 (517)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHC
Confidence 5788899999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccC-CceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccc
Q 009923 319 GEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEM-GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVL 397 (522)
Q Consensus 319 a~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 397 (522)
|+++++++++++.++|+|+.|+++.+++++|++|.+|++ ++.+||+|||||+.+++|.+|+++||+++++++++++++|
T Consensus 321 a~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~V 400 (517)
T TIGR02342 321 CKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLI 400 (517)
T ss_pred CEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 999999999999999999999999999999999999987 4899999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccc
Q 009923 398 FGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGD 477 (522)
Q Consensus 398 pGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d 477 (522)
|||||+|++||.+|++++...++++|+++++|++||+.||++|++|||+|+.+++++|+..|.+++.++|+|+.+|++.|
T Consensus 401 pGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d 480 (517)
T TIGR02342 401 PGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITD 480 (517)
T ss_pred ECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccc
Confidence 99999999999999999888899999999999999999999999999999999999999999888889999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcC
Q 009923 478 MAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA 514 (522)
Q Consensus 478 ~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~ 514 (522)
|++.|||||+.+|+++++.|+|+|++|||||++|.++
T Consensus 481 ~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~~ 517 (517)
T TIGR02342 481 MLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFTR 517 (517)
T ss_pred hhhccceEcHHHHHHHHHHHHHHHHHHhcccceeecC
Confidence 9999999999999999999999999999999998764
No 13
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-104 Score=851.21 Aligned_cols=507 Identities=38% Similarity=0.574 Sum_probs=482.1
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcc
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD 82 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~ 82 (522)
++++++++.+|.+++..|++||.++++++++||||+||+|| ++ | ++|||||+|||++|+++||+++|++++|++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~ 84 (522)
T TIGR02345 6 LLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQD 84 (522)
T ss_pred hhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHH
Confidence 56888889999999999999999999999999999999999 76 7 99999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhcccc
Q 009923 83 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKIL 162 (522)
Q Consensus 83 ~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~ 162 (522)
+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.+++.|+++++|++..+....+.|.++++|+++||+.
T Consensus 85 ~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~ 164 (522)
T TIGR02345 85 SEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLI 164 (522)
T ss_pred HHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999998642111246799999999999999
Q ss_pred chhhhHHHHHHHHHHHhhcC-CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC----CCCccccCcceEEeecccccc
Q 009923 163 SQDKEHFGQLAVDAVMRLKG-STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI----GQPKRIENAKILVANTAMDTD 237 (522)
Q Consensus 163 ~~~~~~la~lv~~a~~~~~~-~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~----~~~~~i~~~rIll~~~~L~~~ 237 (522)
+.++++|++++++|+..++. .+|+++|+|++++||+++||++++|++|++++.+ .||+.++||+|++++++|++.
T Consensus 165 ~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 244 (522)
T TIGR02345 165 AHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELK 244 (522)
T ss_pred cchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccC
Confidence 99999999999999999875 5788899999999999999999999999998753 368999999999999999998
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHh
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVT 317 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~t 317 (522)
+.+.. ..+.+++++++..+.+.|+++++++++.|++.|+++|++++++++.+++||.+.+|+++++++.+++++|+++|
T Consensus 245 ~~~~~-~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~t 323 (522)
T TIGR02345 245 AEKDN-AEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKAC 323 (522)
T ss_pred ccccc-eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 77653 67888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccc
Q 009923 318 GGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVL 397 (522)
Q Consensus 318 Ga~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 397 (522)
||+++++++++++.++|+|+.+++..+++++|++|+||+++++|||+|||+|+.+++|.+|+++||+++++++++++++|
T Consensus 324 ga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vv 403 (522)
T TIGR02345 324 GGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIV 403 (522)
T ss_pred CCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccc
Q 009923 398 FGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGD 477 (522)
Q Consensus 398 pGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d 477 (522)
||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|++.|
T Consensus 404 pGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d 483 (522)
T TIGR02345 404 AGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGD 483 (522)
T ss_pred eCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccc
Confidence 99999999999999999888899999999999999999999999999999999999999999877778999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcC
Q 009923 478 MAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA 514 (522)
Q Consensus 478 ~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~ 514 (522)
|++.|||||+.+|+++|+.|+|+|++||+||++|.++
T Consensus 484 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 484 NFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred hhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 9999999999999999999999999999999999773
No 14
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-104 Score=851.05 Aligned_cols=506 Identities=35% Similarity=0.562 Sum_probs=478.6
Q ss_pred cccc--hhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhh
Q 009923 6 IFRD--EANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKV 80 (522)
Q Consensus 6 ~~~~--~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~ 80 (522)
++++ +.+..+|.+++..|++||..++++++|||||+||+|| ++ |+++|||||+||+++|+++||+++|+++++++
T Consensus 13 ~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~ 92 (532)
T TIGR02343 13 IIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKS 92 (532)
T ss_pred hhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHH
Confidence 3566 4678899999999999999999999999999999999 76 99999999999999999999999999999999
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhcc
Q 009923 81 QDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 160 (522)
Q Consensus 81 ~~~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 160 (522)
|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|+..+. ...+.|.++++|++++|
T Consensus 93 qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~l~~ia~t~l~sK 171 (532)
T TIGR02343 93 QDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDN-NNKEPLIQAAKTSLGSK 171 (532)
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCC-CCHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999875321 12467999999999999
Q ss_pred ccchhhhHHHHHHHHHHHhhcC----CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeecccc
Q 009923 161 ILSQDKEHFGQLAVDAVMRLKG----STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMD 235 (522)
Q Consensus 161 ~~~~~~~~la~lv~~a~~~~~~----~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L~ 235 (522)
+.+.+.+.|++++++|+..+.. ++|+++|+|++++||+++||++++|++|++++.+ .||+.++||||++++++|+
T Consensus 172 ~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le 251 (532)
T TIGR02343 172 IVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFE 251 (532)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeecc
Confidence 9999999999999999998742 5688999999999999999999999999998754 5899999999999999999
Q ss_pred cccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHH
Q 009923 236 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 315 (522)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~ 315 (522)
+++++.. .++.+++++++..+.+.|+++++.++++|.+.|+++|+++++|+|.+++||.++||++++++++++|+|||+
T Consensus 252 ~~~~~~~-~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~ 330 (532)
T TIGR02343 252 PPKPKTK-HKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAI 330 (532)
T ss_pred ccccccc-eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHH
Confidence 9998654 678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCccccceEEEEEEcC--eEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhC
Q 009923 316 VTGGEIASTFDNPESVKLGHCKLIEEIMIGE--DKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVND 393 (522)
Q Consensus 316 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 393 (522)
+|||+++++++++++.++|+|+.|++..+|+ ++|++|++|++++.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 331 ~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~ 410 (532)
T TIGR02343 331 ATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKN 410 (532)
T ss_pred HhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988 48999999998899999999999999999999999999999999999
Q ss_pred CccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcC-CCceeEEcCC
Q 009923 394 SRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE-GCPAGIDVIS 472 (522)
Q Consensus 394 ~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-~~~~Gid~~~ 472 (522)
+++|||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++++|+..|..+ +.++|+|+.+
T Consensus 411 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~ 490 (532)
T TIGR02343 411 SRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLG 490 (532)
T ss_pred CCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCC
Confidence 999999999999999999999888899999999999999999999999999999999999999999754 6689999999
Q ss_pred CcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhc
Q 009923 473 GSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITC 513 (522)
Q Consensus 473 g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~ 513 (522)
|++.||++.|||||+.+|+++|+.|+|+|++||+||++|..
T Consensus 491 g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 491 DGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred CccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 99999999999999999999999999999999999999854
No 15
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-104 Score=851.67 Aligned_cols=504 Identities=36% Similarity=0.574 Sum_probs=476.3
Q ss_pred cccch--hhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhh
Q 009923 6 IFRDE--ANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKV 80 (522)
Q Consensus 6 ~~~~~--~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~ 80 (522)
+++++ .+...|++++..|++||..++++++|||||+||+|| ++ |+++|||||+||+++|+++||+++|+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~ 88 (526)
T cd03339 9 IVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKS 88 (526)
T ss_pred EecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHh
Confidence 35676 368899999999999999999999999999999999 66 99999999999999999999999999999999
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhcc
Q 009923 81 QDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 160 (522)
Q Consensus 81 ~~~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 160 (522)
|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++.+. ...+.|.++++|+++||
T Consensus 89 q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~l~~ia~tsl~sk 167 (526)
T cd03339 89 QDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP-DNKEPLIQTAMTSLGSK 167 (526)
T ss_pred hhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCc-ccHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999886421 11467999999999999
Q ss_pred ccchhhhHHHHHHHHHHHhhcC----CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeecccc
Q 009923 161 ILSQDKEHFGQLAVDAVMRLKG----STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMD 235 (522)
Q Consensus 161 ~~~~~~~~la~lv~~a~~~~~~----~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L~ 235 (522)
+.+.+.+.|++++++|+..+.. +++++.|+|++++||+++||++++|++|++++.+ .||+.++||||++++++|+
T Consensus 168 ~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le 247 (526)
T cd03339 168 IVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFE 247 (526)
T ss_pred chhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEeccc
Confidence 9999999999999999988742 4567899999999999999999999999999764 5899999999999999999
Q ss_pred cccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHH
Q 009923 236 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 315 (522)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~ 315 (522)
+++++. ..++.+++++++..+.+.|+++++.++++|.+.++++|+++++|++.+++||.++||++++++++++|+|||+
T Consensus 248 ~~~~~~-~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~ 326 (526)
T cd03339 248 PPKPKT-KHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAI 326 (526)
T ss_pred CCcccc-ceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHH
Confidence 998865 3678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCccccceEEEEEEcC--eEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhC
Q 009923 316 VTGGEIASTFDNPESVKLGHCKLIEEIMIGE--DKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVND 393 (522)
Q Consensus 316 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 393 (522)
+|||+++++++++++.++|+|+.|++..+|. ++|++|++|+++++|||+|||+|+.+++|++|+++||++++++++++
T Consensus 327 ~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~ 406 (526)
T cd03339 327 ATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRD 406 (526)
T ss_pred HhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999985 68999999999999999999999999999999999999999999999
Q ss_pred CccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcC-CCceeEEcCC
Q 009923 394 SRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE-GCPAGIDVIS 472 (522)
Q Consensus 394 ~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-~~~~Gid~~~ 472 (522)
+++|||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++++|+..|.++ +.++|+|+.+
T Consensus 407 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~ 486 (526)
T cd03339 407 NRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLG 486 (526)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCC
Confidence 999999999999999999999888899999999999999999999999999999999999999999643 6689999999
Q ss_pred CcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHH
Q 009923 473 GSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 511 (522)
Q Consensus 473 g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI 511 (522)
|++.||++.|||||+.+|+++|+.|+|+|++|||||++|
T Consensus 487 g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii 525 (526)
T cd03339 487 RGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVI 525 (526)
T ss_pred CccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceec
Confidence 999999999999999999999999999999999999987
No 16
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-103 Score=843.05 Aligned_cols=511 Identities=31% Similarity=0.476 Sum_probs=480.6
Q ss_pred ccccchhhhhhhH-HHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhh
Q 009923 5 RIFRDEANEEKGE-RARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKV 80 (522)
Q Consensus 5 ~~~~~~~~~~~g~-~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~ 80 (522)
.+++++.+..+|. +++..|++||..+++++++||||+||+|| ++ |+++|||||+||+|+|+++||+++|++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~s 83 (531)
T TIGR02346 4 SLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEM 83 (531)
T ss_pred ccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHH
Confidence 4567776677775 59999999999999999999999999999 66 99999999999999999999999999999999
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhccc-ccCCchhhhHHHHHHHHHHHhhc
Q 009923 81 QDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVV-DNKENAETFKSDLMKIAMTTLSS 159 (522)
Q Consensus 81 ~~~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~l~~i~~t~l~s 159 (522)
|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++ ++.... ..+.+.++++|+++|
T Consensus 84 qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~--~~~~l~~i~~tsl~s 161 (531)
T TIGR02346 84 QENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVR--NKKELIKALKASISS 161 (531)
T ss_pred HhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--CHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999986 664311 146799999999999
Q ss_pred cccchhhhHHHHHHHHHHHhhcC----CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeecccc
Q 009923 160 KILSQDKEHFGQLAVDAVMRLKG----STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMD 235 (522)
Q Consensus 160 k~~~~~~~~la~lv~~a~~~~~~----~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~ 235 (522)
|+.+. +++|++++++|+..++. .++++.|+|++++|+++++|++++|++|+++. ..+|+.++||||+++++|++
T Consensus 162 K~~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~-~~~~k~i~n~kI~l~~~~l~ 239 (531)
T TIGR02346 162 KQYGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREA-EGSVKRVKNAKVAVFSCPLD 239 (531)
T ss_pred ccCch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccC-CCCceeccCCCEEEEecCcC
Confidence 99888 99999999999998864 46778999999999999999999999999985 56899999999999999999
Q ss_pred cccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHH
Q 009923 236 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 315 (522)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~ 315 (522)
+++++.. .++.+++++++..+...|+++++.+++.|.+.|++||+++++|+|.+++||.++||++++++++.+|+|||.
T Consensus 240 ~~~~~~~-~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~ 318 (531)
T TIGR02346 240 TATTETK-GTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCK 318 (531)
T ss_pred CCcccCc-eEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 9988754 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCccccceEEEEEEcCeEEEEEeccc-CCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCC
Q 009923 316 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVE-MGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDS 394 (522)
Q Consensus 316 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~ 394 (522)
+|||+++++++++++.++|+|+.|++..+|+++|.+|+++. .++++||+|||||+.+++|++|+++||+++++++++++
T Consensus 319 ~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~ 398 (531)
T TIGR02346 319 TVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDN 398 (531)
T ss_pred HHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999887 58899999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCc
Q 009923 395 RVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGS 474 (522)
Q Consensus 395 ~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (522)
++||||||+|++||.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|+
T Consensus 399 ~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~ 478 (531)
T TIGR02346 399 RFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAES 478 (531)
T ss_pred CEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCC
Confidence 99999999999999999999888899999999999999999999999999999999999999999877778999999999
Q ss_pred --ccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCC
Q 009923 475 --VGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRED 520 (522)
Q Consensus 475 --~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~~~~ 520 (522)
+.||++.|||||+.+|+++|+.|+|+|++|||||++|...|...++
T Consensus 479 ~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~ 526 (531)
T TIGR02346 479 DGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPK 526 (531)
T ss_pred ccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCC
Confidence 5999999999999999999999999999999999999998866555
No 17
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.6e-103 Score=841.45 Aligned_cols=503 Identities=37% Similarity=0.576 Sum_probs=473.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCCC
Q 009923 12 NEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDG 88 (522)
Q Consensus 12 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDG 88 (522)
++.+|++++..|++||..+++++++||||+||+|| ++ |+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 57889999999999999999999999999999999 66 9999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhc-ccccCCchhhhHHHHHHHHHHHhhccccchhhh
Q 009923 89 TTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQK-VVDNKENAETFKSDLMKIAMTTLSSKILSQDKE 167 (522)
Q Consensus 89 tts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ 167 (522)
|||+++|+++||+++.+|+++|+||+.|++||+.|.+.+++.|++. ++|++..+ .+.|.++++|+++||+.+.+++
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~l~~va~tsl~sK~~~~~~~ 162 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELG---REALINVAKTSMSSKIIGLDSD 162 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccc---HHHHHHHHHHHhccccchhhHH
Confidence 9999999999999999999999999999999999999999999874 88876321 3679999999999999999999
Q ss_pred HHHHHHHHHHHhhc---C----CCCCcCeEEEEecCCCCcCcceeeeEEEeccCC-CCCCccccCcceEEeecccccccc
Q 009923 168 HFGQLAVDAVMRLK---G----STNLESIQIIKKPGGSLKDSFLDEGFILDKKIG-IGQPKRIENAKILVANTAMDTDKV 239 (522)
Q Consensus 168 ~la~lv~~a~~~~~---~----~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~-~~~~~~i~~~rIll~~~~L~~~~~ 239 (522)
+|++++++|+..++ . .+++++|++++++||++++|++++|++|++++. ..||++++||+|++++++|++.++
T Consensus 163 ~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~ 242 (536)
T TIGR02340 163 FFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKM 242 (536)
T ss_pred HHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcc
Confidence 99999999999885 1 257789999999999999999999999999875 468999999999999999999887
Q ss_pred cccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCC
Q 009923 240 KIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGG 319 (522)
Q Consensus 240 ~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa 319 (522)
+.. .++.++++.+++.+.+.|++++.+.++.|.+.++++|+++++|++.+++||.+++|++++|+++++|+|||++|||
T Consensus 243 ~~~-~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa 321 (536)
T TIGR02340 243 ALG-VQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGG 321 (536)
T ss_pred cCc-eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 764 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCC------CCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhC
Q 009923 320 EIASTFDNP------ESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVND 393 (522)
Q Consensus 320 ~ii~~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 393 (522)
++++++.++ ++.++|+|++|+++.+|+++|++|++|+.+++|||+|||+|+.+++|++|+++||++++++++++
T Consensus 322 ~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~ 401 (536)
T TIGR02340 322 TLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLES 401 (536)
T ss_pred EEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999997654 34459999999999999999999999998899999999999999999999999999999999999
Q ss_pred CccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcC--------CCc
Q 009923 394 SRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE--------GCP 465 (522)
Q Consensus 394 ~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~--------~~~ 465 (522)
+++|||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++ +.+
T Consensus 402 ~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~ 481 (536)
T TIGR02340 402 NSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKW 481 (536)
T ss_pred CCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCce
Confidence 999999999999999999999888899999999999999999999999999999999999999999765 347
Q ss_pred eeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCC
Q 009923 466 AGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRR 518 (522)
Q Consensus 466 ~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~~ 518 (522)
+|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...|++.
T Consensus 482 ~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~~ 534 (536)
T TIGR02340 482 YGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQS 534 (536)
T ss_pred EeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999988554
No 18
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.4e-103 Score=841.49 Aligned_cols=498 Identities=36% Similarity=0.566 Sum_probs=474.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCCC
Q 009923 12 NEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDG 88 (522)
Q Consensus 12 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDG 88 (522)
++..+.+++.+|++||..+++++++||||+||+|| ++ |+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 56778889999999999999999999999999999 66 9999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchhhhH
Q 009923 89 TTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEH 168 (522)
Q Consensus 89 tts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ 168 (522)
|||+++|+++|++++.+++++|+||..|++||++|.+.+++.|+++++|++.++ .+.|.++++|+++||+.+.++++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~---~~~l~~va~ts~~sK~~~~~~~~ 158 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND---RESLIKSATTSLNSKVVSQYSSL 158 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHHhccccchhhHHH
Confidence 999999999999999999999999999999999999999999999999986322 36799999999999999999999
Q ss_pred HHHHHHHHHHhhcC-----CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCC--CCccccCcceEEeecccccccccc
Q 009923 169 FGQLAVDAVMRLKG-----STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIG--QPKRIENAKILVANTAMDTDKVKI 241 (522)
Q Consensus 169 la~lv~~a~~~~~~-----~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~--~~~~i~~~rIll~~~~L~~~~~~~ 241 (522)
|++++++|+..+++ .+++++|++++++||+++||++++|++|++++.+. +|++++|||+++++|+|++++++.
T Consensus 159 ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~ 238 (515)
T cd03338 159 LAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDM 238 (515)
T ss_pred HHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEecccccccccc
Confidence 99999999999864 46788999999999999999999999999998664 499999999999999999988776
Q ss_pred cCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC-----CchHHHHHHHcCCeEEecCChhhHHHHHHH
Q 009923 242 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLI-----YNFPEELFADAGILAIEHADFDGIERLALV 316 (522)
Q Consensus 242 ~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i-----~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~ 316 (522)
. .++.+++++++..+...|+++++.++++|++.|+++|+++++| ++.+++||.++||++++++++++|+|||++
T Consensus 239 ~-~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~ 317 (515)
T cd03338 239 D-NNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKT 317 (515)
T ss_pred C-ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHH
Confidence 5 5678899999999999999999999999999999999999987 889999999999999999999999999999
Q ss_pred hCCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccC-CceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCc
Q 009923 317 TGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEM-GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSR 395 (522)
Q Consensus 317 tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 395 (522)
|||+++++++++++.++|+|+.|++..+|+++|++|++|++ +++|||+|||+|+.+++|.+|+++||++++++++++++
T Consensus 318 tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~ 397 (515)
T cd03338 318 IGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRA 397 (515)
T ss_pred HCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999987 68999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcc
Q 009923 396 VLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV 475 (522)
Q Consensus 396 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~ 475 (522)
+|||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++
T Consensus 398 vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~ 477 (515)
T cd03338 398 LIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAI 477 (515)
T ss_pred EEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCc
Confidence 99999999999999999998888999999999999999999999999999999999999999998778899999999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhc
Q 009923 476 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITC 513 (522)
Q Consensus 476 ~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~ 513 (522)
.||++.|||||+.+|+++++.|+|+|++||+||++|.+
T Consensus 478 ~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 478 TNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 99999999999999999999999999999999999864
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-101 Score=821.20 Aligned_cols=473 Identities=31% Similarity=0.482 Sum_probs=449.6
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccc
Q 009923 8 RDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDE 84 (522)
Q Consensus 8 ~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~ 84 (522)
+++++..+|.+++..|+.||..++++++|||||+||+|| ++ |+++|||||+|||++|+++||+++|++++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 2 NPKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 466778899999999999999999999999999999999 66 999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCC--chhhhHHHHHHHHHHHhhcccc
Q 009923 85 VGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKE--NAETFKSDLMKIAMTTLSSKIL 162 (522)
Q Consensus 85 ~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~--~~~~~~~~l~~i~~t~l~sk~~ 162 (522)
+||||||+++|+++|++++.+++++|+||..|++||++|.+.+++.|++++++++. + .+.+.++++|+++||+.
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~----~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTD----RELLLSVARTSLRTKLH 157 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999998863 3 47899999999999999
Q ss_pred chhhhHHHHHHHHHHHhhcC---CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeeccccccc
Q 009923 163 SQDKEHFGQLAVDAVMRLKG---STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMDTDK 238 (522)
Q Consensus 163 ~~~~~~la~lv~~a~~~~~~---~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L~~~~ 238 (522)
+.+.+.|++++++|+..+++ .+++++|+|++++||++++|++++|++|++++.+ .||++++||+|++++++|++++
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~ 237 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEK 237 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCc
Confidence 99999999999999999865 4678899999999999999999999999999754 5899999999999999999987
Q ss_pred ccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhC
Q 009923 239 VKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTG 318 (522)
Q Consensus 239 ~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tG 318 (522)
++.. .++.++ +|+++++|++.+++||.++||++++++++++|+|||++||
T Consensus 238 ~~~~-~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tG 287 (484)
T cd03342 238 TEVN-SGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACG 287 (484)
T ss_pred cccC-cEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC
Confidence 7654 333322 9999999999999999999999999999999999999999
Q ss_pred CeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCcccc
Q 009923 319 GEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLF 398 (522)
Q Consensus 319 a~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvp 398 (522)
|+++++++++++.++|+|++|+++.+|+++|++|++|+.++.|||+|||||+.+++|+||+++||+++++++++++++||
T Consensus 288 a~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vp 367 (484)
T cd03342 288 GVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVP 367 (484)
T ss_pred CEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCccccc
Q 009923 399 GGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDM 478 (522)
Q Consensus 399 GGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~ 478 (522)
||||+|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++.||
T Consensus 368 GGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~ 447 (484)
T cd03342 368 GAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDP 447 (484)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccch
Confidence 99999999999999999889999999999999999999999999999999999999999998888889999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcC
Q 009923 479 AELGISESFKVKQAVLLSATEAAEMILRVDEIITCA 514 (522)
Q Consensus 479 ~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~ 514 (522)
++.|||||+.+|+++|+.|+|+|++|||||++|.++
T Consensus 448 ~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 448 ESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred hhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 999999999999999999999999999999999764
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3e-100 Score=809.89 Aligned_cols=462 Identities=32% Similarity=0.528 Sum_probs=438.6
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcc
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD 82 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~ 82 (522)
+++++++..+|++++..|+.||..++++++|||||+|++|| ++ |+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 83 (480)
T cd03337 4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (480)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHH
Confidence 45777789999999999999999999999999999999999 66 9999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhcccc
Q 009923 83 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKIL 162 (522)
Q Consensus 83 ~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~ 162 (522)
+++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++..+ .+.|.++++|+++||+.
T Consensus 84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~---~~~l~~i~~t~l~sK~~ 160 (480)
T cd03337 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVND---RAQMLKIIKSCIGTKFV 160 (480)
T ss_pred HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCC---HHHHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999999999999999999999999986422 46799999999999999
Q ss_pred chhhhHHHHHHHHHHHhhcCC-------CCCc-CeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeecc
Q 009923 163 SQDKEHFGQLAVDAVMRLKGS-------TNLE-SIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTA 233 (522)
Q Consensus 163 ~~~~~~la~lv~~a~~~~~~~-------~~~~-~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~ 233 (522)
+.|.+.|++++++|+..++.+ +|++ +|+|++++||+++||++++|++|++++.+ .||++++||||++++|+
T Consensus 161 ~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~ 240 (480)
T cd03337 161 SRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCP 240 (480)
T ss_pred hhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecC
Confidence 999999999999999998642 3333 59999999999999999999999999765 58999999999999998
Q ss_pred cccccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHH
Q 009923 234 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERL 313 (522)
Q Consensus 234 L~~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~i 313 (522)
|++ +|+++++|+|.+++||.++||++++++++++|+||
T Consensus 241 Le~------------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rI 278 (480)
T cd03337 241 LEY------------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRI 278 (480)
T ss_pred cce------------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHH
Confidence 865 99999999999999999999999999999999999
Q ss_pred HHHhCCeeccccCCCCCCCccc-cceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhh
Q 009923 314 ALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVN 392 (522)
Q Consensus 314 a~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 392 (522)
|++|||++++++++++++++|+ |+.+++..+++++|++|++|+++++|||+|||||+.+++|++|+++||+++++++++
T Consensus 279 a~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~ 358 (480)
T cd03337 279 ARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIIL 358 (480)
T ss_pred HHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999 677778888999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcC-CCceeEEcC
Q 009923 393 DSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKE-GCPAGIDVI 471 (522)
Q Consensus 393 ~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~-~~~~Gid~~ 471 (522)
++++|||||++|++||.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.++ +.++|+|+.
T Consensus 359 ~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~ 438 (480)
T cd03337 359 NPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGE 438 (480)
T ss_pred CCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeecc
Confidence 9999999999999999999999988999999999999999999999999999999999999999999877 678999999
Q ss_pred CCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHh
Q 009923 472 SGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIIT 512 (522)
Q Consensus 472 ~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~ 512 (522)
+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 439 ~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 439 TGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred CCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 99999999999999999999999999999999999999985
No 21
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-101 Score=733.88 Aligned_cols=499 Identities=37% Similarity=0.555 Sum_probs=474.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCCC
Q 009923 12 NEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDG 88 (522)
Q Consensus 12 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDG 88 (522)
+..+-++.|.+||+|++++++.+||||||+||||| +. |+++|||||+||||.|.+-||+++||++++..||.++|||
T Consensus 20 d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDG 99 (534)
T KOG0358|consen 20 DKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDG 99 (534)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCC
Confidence 34567889999999999999999999999999999 65 9999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchhhhH
Q 009923 89 TTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEH 168 (522)
Q Consensus 89 tts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ 168 (522)
|||||+|+++||+.+.+|+++|+||+.|.+.|+.|.+.++++|.+++.|++..+ ++.|.+-+.|+|+||+.++++..
T Consensus 100 TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsd---re~Li~~atTsLnSKvvSq~s~l 176 (534)
T KOG0358|consen 100 TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSD---RESLIKSATTSLNSKVVSQYSSL 176 (534)
T ss_pred ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCc---HHHHHHHHHhHhhHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999998543 57799999999999999999999
Q ss_pred HHHHHHHHHHhhc-----CCCCCcCeEEEEecCCCCcCcceeeeEEEeccCC-CCCCccccCcceEEeeccccccccccc
Q 009923 169 FGQLAVDAVMRLK-----GSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIG-IGQPKRIENAKILVANTAMDTDKVKIY 242 (522)
Q Consensus 169 la~lv~~a~~~~~-----~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~-~~~~~~i~~~rIll~~~~L~~~~~~~~ 242 (522)
++.+.++|+..+- .++|+++|+|+|..||.++|+++++|++|++... ...|+++++++|.+++|.+.++++...
T Consensus 177 lapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdme 256 (534)
T KOG0358|consen 177 LAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDME 256 (534)
T ss_pred cchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcc
Confidence 9999999999873 3578899999999999999999999999998764 347999999999999999999999886
Q ss_pred CeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCC-----CchHHHHHHHcCCeEEecCChhhHHHHHHHh
Q 009923 243 GARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLI-----YNFPEELFADAGILAIEHADFDGIERLALVT 317 (522)
Q Consensus 243 ~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i-----~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~t 317 (522)
.++.++++.++++..+.|++|+.+++++|++.|+|+++.|++| +|.++|||.+.+|+|++.+.++|+|.+|+.+
T Consensus 257 -n~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l 335 (534)
T KOG0358|consen 257 -NQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTL 335 (534)
T ss_pred -cceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhc
Confidence 5799999999999999999999999999999999999999975 6799999999999999999999999999999
Q ss_pred CCeeccccCCCCCCCccccceEEEEEE-cCeEEEEEecccC-CceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCc
Q 009923 318 GGEIASTFDNPESVKLGHCKLIEEIMI-GEDKLIHFSGVEM-GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSR 395 (522)
Q Consensus 318 Ga~ii~~~~~l~~~~lG~~~~v~~~~i-g~~~~~~~~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 395 (522)
|+.++.+++.+++..+|+++.++|..- |+.+++.+.|+.+ +..+||++||+++..++|.+|++|||||++|++++.+.
T Consensus 336 ~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~ 415 (534)
T KOG0358|consen 336 GCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRA 415 (534)
T ss_pred CCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccc
Confidence 999999999999999999999999755 4459999999887 78999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcc
Q 009923 396 VLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV 475 (522)
Q Consensus 396 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~ 475 (522)
++||||+.||.+|..|.+++....|.+.|++++||+|||.||.||++|||++|+.++++||+.|++|+..+||+++.|.+
T Consensus 416 li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~ 495 (534)
T KOG0358|consen 416 LIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGI 495 (534)
T ss_pred eecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcC
Q 009923 476 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA 514 (522)
Q Consensus 476 ~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~ 514 (522)
.||++..|+.|+.|-.++++.|+|++.|||+||+|+.++
T Consensus 496 tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~ar 534 (534)
T KOG0358|consen 496 TNILEENVVQPLLVSISAITLATETVRSILKIDDIVNAR 534 (534)
T ss_pred hhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhcccC
Confidence 999999999999999999999999999999999998653
No 22
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.5e-97 Score=785.96 Aligned_cols=457 Identities=34% Similarity=0.520 Sum_probs=432.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCCCch
Q 009923 14 EKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTT 90 (522)
Q Consensus 14 ~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGtt 90 (522)
..+++++..|++||.++++++++||||+|++|| ++ |+++|||||+||+++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 457789999999999999999999999999999 66 999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccc-cCCchhhhHHHHHHHHHHHhhccccchhhhHH
Q 009923 91 SVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHF 169 (522)
Q Consensus 91 s~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~-~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~l 169 (522)
|+++|+++||+++.+++++|+||+.|++||+.|.+.+++.|++++++ +.... ..+.+.++++|+++||+.+ +.++|
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~--~~~~l~~i~~t~l~sk~~~-~~~~l 160 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR--NKEEVSKALKTAIASKQYG-NEDFL 160 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcc--CHHHHHHHHHHHhcccccc-hHHHH
Confidence 99999999999999999999999999999999999999999999876 43211 1467899999999999976 68999
Q ss_pred HHHHHHHHHhhcC----CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeecccccccccccCeE
Q 009923 170 GQLAVDAVMRLKG----STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 245 (522)
Q Consensus 170 a~lv~~a~~~~~~----~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~~~~~~~~~~~ 245 (522)
++++++|+..++. .+++++|+|++++||+++||++++|++|++.. ..++++++||+|++++++|++
T Consensus 161 ~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~-~~~~~~~~n~~Ili~~~~Le~--------- 230 (472)
T cd03341 161 SPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREP-EGSVKRVKKAKVAVFSCPFDI--------- 230 (472)
T ss_pred HHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEcccc-CCCceeccCCcEEEEeccccC---------
Confidence 9999999998863 46778999999999999999999999998765 456788999999999998875
Q ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCeecccc
Q 009923 246 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTF 325 (522)
Q Consensus 246 ~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~ 325 (522)
++++|+++++|++.+++||.++||++++++++++|+|||++|||++++++
T Consensus 231 ------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~ 280 (472)
T cd03341 231 ------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRL 280 (472)
T ss_pred ------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccc
Confidence 88999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccceEEEEEEcCeEEEEEecccC-CceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchH
Q 009923 326 DNPESVKLGHCKLIEEIMIGEDKLIHFSGVEM-GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPE 404 (522)
Q Consensus 326 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E 404 (522)
+++++.++|+|+.|++..+|+++|++|++|.. +++|||+|||||+.+++|.||+++||+++++++++++++|||||++|
T Consensus 281 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e 360 (472)
T cd03341 281 GAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATE 360 (472)
T ss_pred ccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHH
Confidence 99999999999999999999999999999987 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCC--cccccccCC
Q 009923 405 MVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISG--SVGDMAELG 482 (522)
Q Consensus 405 ~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g--~~~d~~~~g 482 (522)
++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+| ++.||++.|
T Consensus 361 ~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~g 440 (472)
T cd03341 361 IELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAG 440 (472)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhcc
Confidence 999999999988888999999999999999999999999999999999999999987777899999999 999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhhHHHhc
Q 009923 483 ISESFKVKQAVLLSATEAAEMILRVDEIITC 513 (522)
Q Consensus 483 i~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~ 513 (522)
||||+.+|+++|+.|+|+|++|||||++|.+
T Consensus 441 I~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 441 IFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred ceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999999999999999999999999865
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.8e-96 Score=779.97 Aligned_cols=455 Identities=46% Similarity=0.684 Sum_probs=435.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCCCc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGT 89 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGt 89 (522)
...+++++.+|++||..+++++++||||+|++|| ++ |+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 4578899999999999999999999999999999 66 99999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchhhhHH
Q 009923 90 TSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHF 169 (522)
Q Consensus 90 ts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~l 169 (522)
||+++|+++|++++.+++++|+||..|++||+.|++.+++.|+++++|.+..+ .+.++++++|+++||+.+.|++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~---~~~l~~ia~tsl~sK~~~~~~~~l 159 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVED---REELLKVATTSLNSKLVSGGDDFL 159 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCC---HHHHHHHhHhcccccccccchHHH
Confidence 99999999999999999999999999999999999999999999999854321 478999999999999999999999
Q ss_pred HHHHHHHHHhhcC---CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeecccccccccccCeE
Q 009923 170 GQLAVDAVMRLKG---STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMDTDKVKIYGAR 245 (522)
Q Consensus 170 a~lv~~a~~~~~~---~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L~~~~~~~~~~~ 245 (522)
++++++|+..+++ .++.+.|+|++++||+++||++++|++|++++.+ .||+.++||||++++++|++
T Consensus 160 ~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~--------- 230 (464)
T cd00309 160 GELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY--------- 230 (464)
T ss_pred HHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce---------
Confidence 9999999999876 3567899999999999999999999999999864 47899999999999999875
Q ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCeecccc
Q 009923 246 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTF 325 (522)
Q Consensus 246 ~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~ 325 (522)
+|+++++|++.+++||.++||++++++++++|+|||++|||++++++
T Consensus 231 ---------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~ 277 (464)
T cd00309 231 ---------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRL 277 (464)
T ss_pred ---------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccc
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHH
Q 009923 326 DNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 405 (522)
Q Consensus 326 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~ 405 (522)
+++++.++|+|+.+++..+|+++|++|+++..++.|||+|||||+.+++|++|+++||+++++++++++++|||||++|+
T Consensus 278 ~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~ 357 (464)
T cd00309 278 EDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEI 357 (464)
T ss_pred ccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCccc
Q 009923 406 VMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISE 485 (522)
Q Consensus 406 ~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~d 485 (522)
+|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++..++|+|+.+|++.||.+.||||
T Consensus 358 ~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~d 437 (464)
T cd00309 358 ELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIID 437 (464)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCee
Confidence 99999999998889999999999999999999999999999999999999999987777899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHh
Q 009923 486 SFKVKQAVLLSATEAAEMILRVDEIIT 512 (522)
Q Consensus 486 p~~vk~~~l~~A~e~~~~iL~iD~iI~ 512 (522)
|+.+|+++++.|+|+|++||+||++|.
T Consensus 438 p~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 438 PLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999999999999999999984
No 24
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-95 Score=767.96 Aligned_cols=499 Identities=38% Similarity=0.571 Sum_probs=469.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccC
Q 009923 10 EANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVG 86 (522)
Q Consensus 10 ~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~G 86 (522)
+.....|.++|.+|+.|+..++++|++||||+||+|| ++ |+++|||||+||+++|+++||+|+|++++|++||+++|
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999999 76 79999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchhh
Q 009923 87 DGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDK 166 (522)
Q Consensus 87 DGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~ 166 (522)
|||||++||+++||+++.+++.+|+||+.|++||++|.+.+.++|+++++|+..+. ... +++.|+++||..+++
T Consensus 83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~----~~~-~~~~t~v~sk~~~~~- 156 (524)
T COG0459 83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE----EEL-KIAITSVASKSANSD- 156 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcch----hhh-hhhhheeeeeeccCh-
Confidence 99999999999999999999999999999999999999999999999999998653 122 889999999998877
Q ss_pred hHHHHHHHHHHHhhcCC-CCCcCeEEEEecCCCCcCcceeeeEEEeccC--CCCCC-ccccCcceEEeeccccccccccc
Q 009923 167 EHFGQLAVDAVMRLKGS-TNLESIQIIKKPGGSLKDSFLDEGFILDKKI--GIGQP-KRIENAKILVANTAMDTDKVKIY 242 (522)
Q Consensus 167 ~~la~lv~~a~~~~~~~-~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~--~~~~~-~~i~~~rIll~~~~L~~~~~~~~ 242 (522)
++|++++++|+..++.. .|++.|.+++..||+..++++++|++|++++ ++.|| +.++||+|++++++|+..+++..
T Consensus 157 ~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~ 236 (524)
T COG0459 157 EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELP 236 (524)
T ss_pred HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCc
Confidence 99999999999999752 3678999999999999999999999999954 35688 89999999999999999999887
Q ss_pred CeEEEEcCHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-EEEeCCCCCchHHHHHHHcCCeEEecCChhhH-HHHHHHhCC
Q 009923 243 GARVRVDSMSKAAEIEGAEK-QKMREKVQKIIAHGIN-CFVNRQLIYNFPEELFADAGILAIEHADFDGI-ERLALVTGG 319 (522)
Q Consensus 243 ~~~~~i~~~~~l~~l~~~e~-~~l~~~~~~I~~~~v~-lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L-~~ia~~tGa 319 (522)
.++.++++.++..+.+.|+ +.+..++..+++.++| +++++++++|++++||.+.+|++++++.++++ ++|+.+|||
T Consensus 237 -~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga 315 (524)
T COG0459 237 -LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGA 315 (524)
T ss_pred -ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCc
Confidence 8899999999999888888 9999999999999999 99999999999999999999999999999999 899999999
Q ss_pred eeccccCCCCCCCccc--cceEEEEEEcCeEEEEEecccC--CceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCc
Q 009923 320 EIASTFDNPESVKLGH--CKLIEEIMIGEDKLIHFSGVEM--GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSR 395 (522)
Q Consensus 320 ~ii~~~~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~~~~--~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 395 (522)
++++.++++++..+|. |+.+++..++++++.+|++|+. +++|||+|||+|+.+++|.+|+++|||+++|+++++++
T Consensus 316 ~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~ 395 (524)
T COG0459 316 KIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGK 395 (524)
T ss_pred eEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 9999999999999999999986 88999999999999999999999999999999999888
Q ss_pred cccCCCchHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCc
Q 009923 396 VLFGGGWPEMVMAKEVDELARKTPG-KKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGS 474 (522)
Q Consensus 396 vvpGGG~~E~~la~~L~~~~~~~~~-~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (522)
+|||||++|++++..|++++...++ ++|+++++|++||+.||++|++|||+|+.+++.+|++.|. ...+|+|+.+|+
T Consensus 396 iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~~ 473 (524)
T COG0459 396 IVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTGE 473 (524)
T ss_pred eEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCCc
Confidence 9999999999999999998555565 9999999999999999999999999999999999999774 345999999999
Q ss_pred c-cccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCC
Q 009923 475 V-GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 517 (522)
Q Consensus 475 ~-~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~ 517 (522)
+ .||++.|||||+.||+++|+.|+|+|.+||++|++|.+.|.+
T Consensus 474 ~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~ 517 (524)
T COG0459 474 YEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE 517 (524)
T ss_pred cccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 9 789999999999999999999999999999999999999975
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1e-93 Score=767.73 Aligned_cols=479 Identities=43% Similarity=0.637 Sum_probs=456.7
Q ss_pred HHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCCCchhHHHHHHHHHHHHHHH
Q 009923 30 IADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKL 106 (522)
Q Consensus 30 l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGtts~vlL~~~Ll~~~~~l 106 (522)
|++++++||||+|++|| ++ |+++|||||+||+++|+++||+++++++++++|++++||||||+|+|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999 65 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhhcCCCCC
Q 009923 107 VAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNL 186 (522)
Q Consensus 107 i~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~la~lv~~a~~~~~~~~~~ 186 (522)
+++|+||..|++||+.|.+.+++.|+++++++..+. +.++++++|++++|+.+.|.++|++++++|+..+..++++
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~----~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD----ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS----HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc----hhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999987652 6899999999999999999999999999999656555777
Q ss_pred cCeEEEEecCCCCcCcceeeeEEEeccCCCC-CCccccCcceEEeecccccccccccCeEEEEcCHHHHHHHHHHHHHHH
Q 009923 187 ESIQIIKKPGGSLKDSFLDEGFILDKKIGIG-QPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKM 265 (522)
Q Consensus 187 ~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~-~~~~i~~~rIll~~~~L~~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l 265 (522)
+++.++++.|++++||++++|++|++++.+. ||+++++|+|++++++|++++. . ++++.+++.+++..+.++|++++
T Consensus 157 ~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~-~~~~~~~~~~~~~~~~~~e~~~l 234 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-F-KSEIRITSPEQLDELSKQEKKYL 234 (485)
T ss_dssp GGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-S-TEEEEESSTHHHHHHHHHHHHHH
T ss_pred cchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-c-ccccchhhHHHHHHHHhhhhhhh
Confidence 7899999999999999999999999987654 8999999999999999999987 4 58999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCeeccccCCCCCCCccccceEEEEEEc
Q 009923 266 REKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIG 345 (522)
Q Consensus 266 ~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig 345 (522)
+.++++|.+.++++|+++++|++.++++|.++||.++++++.++|++|+++|||+++++++++++.++|+|+.+++..++
T Consensus 235 ~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~ 314 (485)
T PF00118_consen 235 KKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIG 314 (485)
T ss_dssp HHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEET
T ss_pred ccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred CeEEEEEe--cccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhH
Q 009923 346 EDKLIHFS--GVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKS 423 (522)
Q Consensus 346 ~~~~~~~~--~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~ 423 (522)
+++|++|+ +|..++.+||+||||++.+++|++++++||+++++++++++++|||||++|++|+++|++++...+++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~ 394 (485)
T PF00118_consen 315 NKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQ 394 (485)
T ss_dssp SSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHH
T ss_pred cccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchh
Confidence 99999999 6888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHH
Q 009923 424 HAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEM 503 (522)
Q Consensus 424 ~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~ 503 (522)
+++++|++||+.||++|++|||+|+.+++++|+..|.+++ ++|+|+.+|++.||.+.|||||+.+|+++|+.|+|+|++
T Consensus 395 ~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~-~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~ 473 (485)
T PF00118_consen 395 LAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGN-NYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASL 473 (485)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTT-TEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcccc-ccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999886544 999999999999999999999999999999999999999
Q ss_pred HHhhhHHHhcCC
Q 009923 504 ILRVDEIITCAP 515 (522)
Q Consensus 504 iL~iD~iI~~~~ 515 (522)
|||||++|.++|
T Consensus 474 iL~id~iI~~~~ 485 (485)
T PF00118_consen 474 ILRIDEIIMAKP 485 (485)
T ss_dssp HHTEEEEEEESS
T ss_pred HHHHHHHHhcCC
Confidence 999999999876
No 26
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.6e-89 Score=732.52 Aligned_cols=455 Identities=26% Similarity=0.369 Sum_probs=414.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccCh----HHHHHHHHHhhccccc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEV 85 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP----~a~ll~~~~~~~~~~~ 85 (522)
...|++++..|++|+..++++++|||||+||+|| .+ |+++|||||+||+++|+++|| +|+|++++|++|++++
T Consensus 5 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 84 (542)
T PRK12849 5 IKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVA 84 (542)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCcc
Confidence 4568899999999999999999999999999999 66 999999999999999999999 9999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchh
Q 009923 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165 (522)
Q Consensus 86 GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 165 (522)
||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++. .+.|.++++|+. ++
T Consensus 85 GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~-----~~~l~~va~ts~------~~ 153 (542)
T PRK12849 85 GDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSG-----SEEIAQVATISA------NG 153 (542)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHhc------CC
Confidence 9999999999999999999999999999999999999999999999999999863 367999998875 37
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcC-cceeeeEEEeccCCC--------CCCccccCcceEEeeccccc
Q 009923 166 KEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKD-SFLDEGFILDKKIGI--------GQPKRIENAKILVANTAMDT 236 (522)
Q Consensus 166 ~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~d-S~l~~Givl~~~~~~--------~~~~~i~~~rIll~~~~L~~ 236 (522)
++++++++++|+..++.+. .+.+. +|++.+| |++++|++|++++.+ .+|+.++||+|+++++.+
T Consensus 154 ~~~l~~lv~~Av~~v~~~g---~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i-- 226 (542)
T PRK12849 154 DEEIGELIAEAMEKVGKDG---VITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI-- 226 (542)
T ss_pred hHHHHHHHHHHHHHhccCC---cEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc--
Confidence 8999999999999987543 23443 7888876 799999999988753 258889999999999743
Q ss_pred ccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHc------CCeEEecCCh---
Q 009923 237 DKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADA------GILAIEHADF--- 307 (522)
Q Consensus 237 ~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~------~I~~i~~v~~--- 307 (522)
++++++. .+++++.+.++++|+++++|++.++++|.++ +|++++++++
T Consensus 227 ------------~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~ 283 (542)
T PRK12849 227 ------------SSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDR 283 (542)
T ss_pred ------------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccch
Confidence 3444433 3578888899999999999999999999999 9999999884
Q ss_pred --hhHHHHHHHhCCeecc-----ccCCCCCCCccccceEEEEEEcCeEEEEEecccCC----------------------
Q 009923 308 --DGIERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMG---------------------- 358 (522)
Q Consensus 308 --~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------------------- 358 (522)
++|+|||.+|||++++ +++++++.++|+|+.|++ +.+++++|++|.++
T Consensus 284 r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~---~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~ 360 (542)
T PRK12849 284 RKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTI---TKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYD 360 (542)
T ss_pred hHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEE---eeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4599999999999999 688888889999999995 45889999888764
Q ss_pred -------------ceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHH
Q 009923 359 -------------QACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 425 (522)
Q Consensus 359 -------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~ 425 (522)
+.|||+|||+|+.+++|++|+++||++++++++++ ++|||||++|+++|.+|++++ ..++++|++
T Consensus 361 ~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~-g~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~ 438 (542)
T PRK12849 361 REKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEE-GIVPGGGVALLRAAKALDELA-GLNGDQAAG 438 (542)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc-CeecCCCHHHHHHHHHHHHhh-CCChHHHHH
Confidence 58999999999999999999999999999999987 599999999999999999998 889999999
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHH
Q 009923 426 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMIL 505 (522)
Q Consensus 426 ~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL 505 (522)
+++|++||+.||++|++|||+|+.+++++|+..| +++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||
T Consensus 439 i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL 514 (542)
T PRK12849 439 VEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLL 514 (542)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765 579999999999999999999999999999999999999999
Q ss_pred hhhHHHhcCCCC
Q 009923 506 RVDEIITCAPRR 517 (522)
Q Consensus 506 ~iD~iI~~~~~~ 517 (522)
+||++|..+|++
T Consensus 515 ~id~iI~~~~~~ 526 (542)
T PRK12849 515 TTEALVADKPEE 526 (542)
T ss_pred hHHHHHhcCCcc
Confidence 999999988864
No 27
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.7e-89 Score=732.24 Aligned_cols=457 Identities=25% Similarity=0.376 Sum_probs=419.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccCh----HHHHHHHHHhhccccc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEV 85 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP----~a~ll~~~~~~~~~~~ 85 (522)
...|++++..|++|+..++++++|||||+|++|| ++ |+++|||||+||||+|+++|| +++|+++++++|++++
T Consensus 5 ~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~ 84 (542)
T PRK00013 5 IKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 84 (542)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCccc
Confidence 5678899999999999999999999999999999 66 999999999999999999999 7999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchh
Q 009923 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165 (522)
Q Consensus 86 GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 165 (522)
||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.+++.|+++++|++. .++|.+++.|+. ++
T Consensus 85 GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~-----~~~l~~va~ts~------~~ 153 (542)
T PRK00013 85 GDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVED-----KEEIAQVATISA------NG 153 (542)
T ss_pred CCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHhcc------cc
Confidence 9999999999999999999999999999999999999999999999999999863 367999998765 36
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC--------CCCccccCcceEEeecccccc
Q 009923 166 KEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI--------GQPKRIENAKILVANTAMDTD 237 (522)
Q Consensus 166 ~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~--------~~~~~i~~~rIll~~~~L~~~ 237 (522)
++.+++++++|+..++.+. .|.|.+.+| ..++|++++|++|++++.+ .+|+.++||+|+++|+.
T Consensus 154 ~~~ls~lv~~Av~~v~~~g---~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~---- 225 (542)
T PRK00013 154 DEEIGKLIAEAMEKVGKEG---VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKK---- 225 (542)
T ss_pred hHHHHHHHHHHHHHhCcCC---cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCc----
Confidence 8999999999999987543 477877776 7889999999999988753 24788999999999974
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcC------CeEEecCC-----
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAG------ILAIEHAD----- 306 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~------I~~i~~v~----- 306 (522)
+++++++. .+++.|.+.+++||+++++|++.++++|..++ |+++++++
T Consensus 226 ----------i~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r 284 (542)
T PRK00013 226 ----------ISNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRR 284 (542)
T ss_pred ----------cCCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccch
Confidence 34455543 46788899999999999999999999999997 99999887
Q ss_pred hhhHHHHHHHhCCeecc-----ccCCCCCCCccccceEEEEEEcCeEEEEEecccCCc----------------------
Q 009923 307 FDGIERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQ---------------------- 359 (522)
Q Consensus 307 ~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~---------------------- 359 (522)
+++|+|||.+|||++++ +++++++.++|+|+.+++. .++|++|++|.+++
T Consensus 285 ~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~ 361 (542)
T PRK00013 285 KAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVT---KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDR 361 (542)
T ss_pred hhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 78999999999999999 7899999999999999964 48999999887654
Q ss_pred -------------eEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHHH
Q 009923 360 -------------ACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAI 426 (522)
Q Consensus 360 -------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~ 426 (522)
.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|+++|.+|+++ ...++++|+++
T Consensus 362 ~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~-g~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i 439 (542)
T PRK00013 362 EKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEE-GIVPGGGVALLRAAPALEAL-KGLNGDEATGI 439 (542)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CcccCcHHHHHHHHHHHHHh-cCCChHHHHHH
Confidence 7899999999999999999999999999999987 59999999999999999998 67889999999
Q ss_pred HHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHHh
Q 009923 427 EAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILR 506 (522)
Q Consensus 427 ~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 506 (522)
++|++||+.||++|++|||+|+.+++++|+..| ++++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+
T Consensus 440 ~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~ 516 (542)
T PRK00013 440 NIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLT 516 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877 46899999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCCC
Q 009923 507 VDEIITCAPRR 517 (522)
Q Consensus 507 iD~iI~~~~~~ 517 (522)
||++|..+|++
T Consensus 517 id~iI~~~~~~ 527 (542)
T PRK00013 517 TEAVVADKPEK 527 (542)
T ss_pred HHHHHhcCCcc
Confidence 99999998865
No 28
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-92 Score=687.27 Aligned_cols=509 Identities=29% Similarity=0.453 Sum_probs=485.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhccc
Q 009923 7 FRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDD 83 (522)
Q Consensus 7 ~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~ 83 (522)
++.++.+++|..++..|++|.+++++++++|+||+.|.|| -+ |.+..||||..||+++++.||+|+-+.+++.+||+
T Consensus 8 ~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqde 87 (527)
T KOG0364|consen 8 LSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDE 87 (527)
T ss_pred cccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcccc
Confidence 4677888999999999999999999999999999999999 44 99999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccc
Q 009923 84 EVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILS 163 (522)
Q Consensus 84 ~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~ 163 (522)
++|||||||++|++++|.++..++++|+||+.|+++|.+|++.++..+++.++|++.++ ...++.++++++.+|+.+
T Consensus 88 evgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~---~~km~~vi~~~v~tk~~~ 164 (527)
T KOG0364|consen 88 EVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKD---QAKMLRVINSSVGTKFNS 164 (527)
T ss_pred cccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCccc---HHHHHhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999988764 366889999999999999
Q ss_pred hhhhHHHHHHHHHHHhhcCC----CCC-cCeEEEEecCCCCcCcceeeeEEEeccCCCC-CCccccCcceEEeecccccc
Q 009923 164 QDKEHFGQLAVDAVMRLKGS----TNL-ESIQIIKKPGGSLKDSFLDEGFILDKKIGIG-QPKRIENAKILVANTAMDTD 237 (522)
Q Consensus 164 ~~~~~la~lv~~a~~~~~~~----~~~-~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~-~~~~i~~~rIll~~~~L~~~ 237 (522)
.|++..+++..+|+..++.+ +|+ ++.++.|++||.+++|++++|+.++++..|. |.+.++||||+|++|||+|.
T Consensus 165 ~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~Leyk 244 (527)
T KOG0364|consen 165 RWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYK 244 (527)
T ss_pred hhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCC
Confidence 99999999999999998654 665 4889999999999999999999999998776 88999999999999999999
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHh
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVT 317 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~t 317 (522)
+.+.. +.+.+...+++....+.|+++.+.++++|+...+++|+++++++|.+++||-+.||++++|+++.|..|++++|
T Consensus 245 kGeSq-tnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~ac 323 (527)
T KOG0364|consen 245 KGESQ-TNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARAC 323 (527)
T ss_pred CCccc-cceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhc
Confidence 88764 77888888999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccccCCCCCCCccc-cceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCcc
Q 009923 318 GGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRV 396 (522)
Q Consensus 318 Ga~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~v 396 (522)
||+++++++++.+.++|+ |+.++...+|+++|++|..|..|+.|||++|||++.+++|++|.++||+.+.|+.+-+|.+
T Consensus 324 ga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~Pkl 403 (527)
T KOG0364|consen 324 GARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKL 403 (527)
T ss_pred CceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcc
Confidence 999999999999999994 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCccc
Q 009923 397 LFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVG 476 (522)
Q Consensus 397 vpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~ 476 (522)
+||||++||.+|+.|++.+....+.+++.+.+.|.||+.+||+|++|||.+++..++.++..|..|...+|+|..+|.+.
T Consensus 404 vPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iV 483 (527)
T KOG0364|consen 404 VPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIV 483 (527)
T ss_pred cCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEe
Confidence 99999999999999999888889999999999999999999999999999999999999999998888899999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCC
Q 009923 477 DMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 519 (522)
Q Consensus 477 d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~~~ 519 (522)
||.+.++|||..+|.+..+.|+|.++++||||++++...++.+
T Consensus 484 Dm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~v~ 526 (527)
T KOG0364|consen 484 DMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKRVE 526 (527)
T ss_pred eeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeeccC
Confidence 9999999999999999999999999999999999988776644
No 29
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-89 Score=679.28 Aligned_cols=510 Identities=29% Similarity=0.449 Sum_probs=476.1
Q ss_pred ccccccchhhhhhhH-HHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHH
Q 009923 3 VERIFRDEANEEKGE-RARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDIS 78 (522)
Q Consensus 3 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~ 78 (522)
+..+|++|+++.+|+ ++..+|++||+.+++++||+|||+||+|| +| |++.+|||.+||+++|+++||+|++|++++
T Consensus 10 ~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~ 89 (537)
T KOG0362|consen 10 IPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEAT 89 (537)
T ss_pred hhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHH
Confidence 456889999999995 69999999999999999999999999999 98 999999999999999999999999999999
Q ss_pred hhcccccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhh
Q 009923 79 KVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLS 158 (522)
Q Consensus 79 ~~~~~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~ 158 (522)
+.|+++.||||++||+|+++||++|.+||..|++|..|++||+.|.+.+++.|+++.+....+. ++-...++++++
T Consensus 90 ~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~----~d~~~~~rs~i~ 165 (537)
T KOG0362|consen 90 QMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDL----EDKEWALRSVIM 165 (537)
T ss_pred HHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccc----cChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999866533221 112278888888
Q ss_pred ccccchhhhHHHHHHHHHHHhhcCC--CCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeeccccc
Q 009923 159 SKILSQDKEHFGQLAVDAVMRLKGS--TNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDT 236 (522)
Q Consensus 159 sk~~~~~~~~la~lv~~a~~~~~~~--~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~~ 236 (522)
||...+ .+++++++++|...+.+. |+.++|+|+++.|+++++|+++.|++|++.. .+.++..+++||++++||++.
T Consensus 166 skq~~~-ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~-eG~v~~ak~arvAvf~cP~d~ 243 (537)
T KOG0362|consen 166 SKQYGN-EDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDP-EGEVKSAKDARVAVFACPFDI 243 (537)
T ss_pred Hhhcch-HHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEecccc-CCcccccccceeEEEecCCCc
Confidence 886544 689999999999998766 8899999999999999999999999999875 566788899999999999999
Q ss_pred ccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHH
Q 009923 237 DKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALV 316 (522)
Q Consensus 237 ~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~ 316 (522)
..+++.+ ++.+++++++..|.+.|...++..++.|.+.|+++|++.+.+++..++|+++.+|++++--++.||+|||+.
T Consensus 244 ~~TEtkg-TvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrt 322 (537)
T KOG0362|consen 244 AQTETKG-TVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRT 322 (537)
T ss_pred ccccCcc-eeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHH
Confidence 9999874 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeccccCCCCCCCccccceEEEEEEcCeEEEEEec-ccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCc
Q 009923 317 TGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSG-VEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSR 395 (522)
Q Consensus 317 tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~-~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 395 (522)
.||++++++..+.+..+|+|++|....+|+.+++.|.. +..+++.|++|||+++..+|+.||+++|++++.+...++++
T Consensus 323 vGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~r 402 (537)
T KOG0362|consen 323 VGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSR 402 (537)
T ss_pred cCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCc
Confidence 99999999999999999999999999999999999984 44568999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCC-c
Q 009923 396 VLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISG-S 474 (522)
Q Consensus 396 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g-~ 474 (522)
++||+|++|++|+..|.+++..++|..|++++.|++||+.+|++|++|+|++..+++++++..|. +....|+|+..+ .
T Consensus 403 LlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~-~g~~~g~di~~e~~ 481 (537)
T KOG0362|consen 403 LLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ-GGKNLGMDIEAEGG 481 (537)
T ss_pred cccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-CCCcceeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999996 456689998776 5
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCC
Q 009923 475 VGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRED 520 (522)
Q Consensus 475 ~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~~~~ 520 (522)
..|+.+.||||.+..|.++++.|+|+|+++|++|+||+++|...|+
T Consensus 482 ~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~ 527 (537)
T KOG0362|consen 482 TIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPK 527 (537)
T ss_pred ccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCC
Confidence 8999999999999999999999999999999999999998887665
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=9.3e-89 Score=730.28 Aligned_cols=459 Identities=24% Similarity=0.362 Sum_probs=417.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccCh----HHHHHHHHHhhccc
Q 009923 11 ANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDD 83 (522)
Q Consensus 11 ~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP----~a~ll~~~~~~~~~ 83 (522)
.+...|++++..|++||..++++++|||||+|++|| .+ |+++|||||+||+++++++|| +++|++++|++|++
T Consensus 15 ~~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~ 94 (555)
T PTZ00114 15 KEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTND 94 (555)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhcc
Confidence 357788999999999999999999999999999999 66 999999999999999999998 99999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccc
Q 009923 84 EVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILS 163 (522)
Q Consensus 84 ~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~ 163 (522)
++||||||+|+|+++||+++.+|+++|+||..|++||+.|.+.+++.|+++++|++. .+.+.++++|+.+
T Consensus 95 evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~-----~~~l~~va~ts~~----- 164 (555)
T PTZ00114 95 KAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKT-----KEDILNVATISAN----- 164 (555)
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999999999999999999863 3679999998764
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCc-ceeeeEEEeccCCCC--------CCccccCcceEEeeccc
Q 009923 164 QDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDS-FLDEGFILDKKIGIG--------QPKRIENAKILVANTAM 234 (522)
Q Consensus 164 ~~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS-~l~~Givl~~~~~~~--------~~~~i~~~rIll~~~~L 234 (522)
.++.+++++++|+..++.++ .|.+.+|+++++| ++++|++|++++.+. ||..++||+|+++|++|
T Consensus 165 -~~~~l~~li~eAv~~vg~~g-----~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L 238 (555)
T PTZ00114 165 -GDVEIGSLIADAMDKVGKDG-----TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKI 238 (555)
T ss_pred -ChHHHHHHHHHHHHHhCcCC-----cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCC
Confidence 37789999999999987543 2666799999998 799999999987532 58889999999999887
Q ss_pred ccccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcC------CeEEec----
Q 009923 235 DTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAG------ILAIEH---- 304 (522)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~------I~~i~~---- 304 (522)
+ ++++ +..+++++.+.++++++++++|++.++++|..++ |+++++
T Consensus 239 ~--------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g 293 (555)
T PTZ00114 239 S--------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFG 293 (555)
T ss_pred C--------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCC
Confidence 5 2333 3456778889999999999999999999999986 999977
Q ss_pred -CChhhHHHHHHHhCCeecccc------CCCCCCCccccceEEEEEEcCeEEEEEeccc---------------------
Q 009923 305 -ADFDGIERLALVTGGEIASTF------DNPESVKLGHCKLIEEIMIGEDKLIHFSGVE--------------------- 356 (522)
Q Consensus 305 -v~~~~L~~ia~~tGa~ii~~~------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~--------------------- 356 (522)
+++++|+|||.+|||+++++. +++++.++|+|++|++.. +++++|.++.
T Consensus 294 ~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~ 370 (555)
T PTZ00114 294 DNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTS 370 (555)
T ss_pred cchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCC
Confidence 667999999999999999997 777778899999999776 5566776654
Q ss_pred --------------CCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHh--cCCC
Q 009923 357 --------------MGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELAR--KTPG 420 (522)
Q Consensus 357 --------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~--~~~~ 420 (522)
.++.|||+|||+|+.+++|.+|+++||+++++++++ +++|||||++|+++|..|++++. ..++
T Consensus 371 ~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~-~gvVpGGGa~e~~~s~~L~~~~~~~~~~~ 449 (555)
T PTZ00114 371 EYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVE-EGIVPGGGVALLRASKLLDKLEEDNELTP 449 (555)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh-cCcccCCcHHHHHHHHHHHHHhhccCCch
Confidence 678999999999999999999999999999999998 55999999999999999999876 5789
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHH
Q 009923 421 KKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEA 500 (522)
Q Consensus 421 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~ 500 (522)
++|+++++|++||+.||++|++|||+|+.+++++|+. ++++++|||+.+|++.||++.|||||+.+|.++|+.|+|+
T Consensus 450 ~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~ 526 (555)
T PTZ00114 450 DQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASV 526 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999976 3567899999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHhcCCCC
Q 009923 501 AEMILRVDEIITCAPRR 517 (522)
Q Consensus 501 ~~~iL~iD~iI~~~~~~ 517 (522)
|++||+||++|...|..
T Consensus 527 A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 527 ASLMLTTEAAIVDLPKE 543 (555)
T ss_pred HHHHHhHHHHHHhCCcc
Confidence 99999999999997765
No 31
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-88 Score=724.76 Aligned_cols=458 Identities=22% Similarity=0.348 Sum_probs=416.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccCh----HHHHHHHHHhhccccc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEV 85 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP----~a~ll~~~~~~~~~~~ 85 (522)
...|++++..|++|+..++++++|||||+||+|| .+ |+++|||||+||+++|+++|| +++|++++|++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~ 85 (541)
T PRK12851 6 VKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVA 85 (541)
T ss_pred ecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhh
Confidence 4457789999999999999999999999999999 66 999999999999999999999 9999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchh
Q 009923 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165 (522)
Q Consensus 86 GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 165 (522)
||||||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++.. +.+.++++++. ++
T Consensus 86 GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~-----~~l~~va~~s~------~~ 154 (541)
T PRK12851 86 GDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTN-----AEIAQVATISA------NG 154 (541)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH-----HHHHHHHHHhc------cC
Confidence 99999999999999999999999999999999999999999999999999998632 67889987764 47
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCC--------CCccccCcceEEeecccccc
Q 009923 166 KEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIG--------QPKRIENAKILVANTAMDTD 237 (522)
Q Consensus 166 ~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~--------~~~~i~~~rIll~~~~L~~~ 237 (522)
++.|++++++|+..++.+. .|.+.+.. +...++++++|++|++++.+. ||+.++||+|+++|++++
T Consensus 155 ~~~l~~lv~~Av~~vg~~g---~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~-- 228 (541)
T PRK12851 155 DAEIGRLVAEAMEKVGNEG---VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS-- 228 (541)
T ss_pred hHHHHHHHHHHHHHhcccC---ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC--
Confidence 8999999999999987543 35665555 567889999999999987543 889999999999998642
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCC------eEEec-----CC
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGI------LAIEH-----AD 306 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I------~~i~~-----v~ 306 (522)
+.++ +..+++.+.+.++++|+++++|++.++++|..++| +++++ ++
T Consensus 229 ------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~ 285 (541)
T PRK12851 229 ------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRR 285 (541)
T ss_pred ------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCcccccc
Confidence 2221 45678899999999999999999999999999997 88886 99
Q ss_pred hhhHHHHHHHhCCeecc-----ccCCCCCCCccccceEEEEEEcCeEEEEEecccCC-----------------------
Q 009923 307 FDGIERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMG----------------------- 358 (522)
Q Consensus 307 ~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 358 (522)
+++|+|||.+|||++++ +++++++.++|+|+.|++.. ++|+++.+|.++
T Consensus 286 ~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (541)
T PRK12851 286 KAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDR 362 (541)
T ss_pred HhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999 68888888899999999655 889999887664
Q ss_pred ------------ceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHHH
Q 009923 359 ------------QACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAI 426 (522)
Q Consensus 359 ------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~ 426 (522)
+.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|+++|..|++++.. ++++|+++
T Consensus 363 ~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~-g~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~ 440 (541)
T PRK12851 363 EKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEE-GIVPGGGVALLRAVKALDKLETA-NGDQRTGV 440 (541)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CcccCchHHHHHHHHHHHHHhcC-CcHHHHHH
Confidence 28899999999999999999999999999999987 59999999999999999999876 89999999
Q ss_pred HHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHHh
Q 009923 427 EAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILR 506 (522)
Q Consensus 427 ~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 506 (522)
++|++||+.||++|++|||+|+.+++++|+..| .++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+
T Consensus 441 ~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~ 516 (541)
T PRK12851 441 EIVRRALEAPVRQIAENAGAEGSVVVGKLREKP----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLT 516 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998765 3799999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCCCCC
Q 009923 507 VDEIITCAPRRRE 519 (522)
Q Consensus 507 iD~iI~~~~~~~~ 519 (522)
||++|..+|++.+
T Consensus 517 id~iI~~~~~~~~ 529 (541)
T PRK12851 517 TEAMVAEKPKKEP 529 (541)
T ss_pred HHHhhhcCCCCCC
Confidence 9999999887543
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.2e-88 Score=717.76 Aligned_cols=450 Identities=26% Similarity=0.373 Sum_probs=412.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccCh----HHHHHHHHHhhccccc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEV 85 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP----~a~ll~~~~~~~~~~~ 85 (522)
...|.+++..|++||..++++++|||||+|++|| ++ |+++|||||+||+++++++|| +++++++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 4578899999999999999999999999999999 66 999999999999999999999 9999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchh
Q 009923 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165 (522)
Q Consensus 86 GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 165 (522)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ + .+.+.++++|+++ .
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~-~----~~~l~~va~ts~~------~ 151 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK-T----KEEIAQVATISAN------G 151 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC-C----HHHHHHHHHHhcC------C
Confidence 999999999999999999999999999999999999999999999999999986 3 3689999999875 3
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcC-cceeeeEEEeccCCCC--------CCccccCcceEEeeccccc
Q 009923 166 KEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKD-SFLDEGFILDKKIGIG--------QPKRIENAKILVANTAMDT 236 (522)
Q Consensus 166 ~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~d-S~l~~Givl~~~~~~~--------~~~~i~~~rIll~~~~L~~ 236 (522)
++++++++++|+..++.+. .|.+ .+|++.+| +++++|++|++++.+. +++.++||+|++++++|
T Consensus 152 ~~~l~~lv~~A~~~v~~~~---~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l-- 224 (520)
T cd03344 152 DEEIGELIAEAMEKVGKDG---VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI-- 224 (520)
T ss_pred hHHHHHHHHHHHHHhccCC---cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC--
Confidence 7899999999999987543 3444 58999988 7999999999987532 33678999999999875
Q ss_pred ccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCC------eEEecC-----
Q 009923 237 DKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGI------LAIEHA----- 305 (522)
Q Consensus 237 ~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I------~~i~~v----- 305 (522)
++++++. .+++.+.+.++++++++++|++.++++|.++|| ++++++
T Consensus 225 ------------~~~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~ 281 (520)
T cd03344 225 ------------SSIQELL-----------PILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDR 281 (520)
T ss_pred ------------CCHHHHH-----------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcc
Confidence 3344433 357889999999999999999999999999999 888766
Q ss_pred ChhhHHHHHHHhCCeecc-----ccCCCCCCCccccceEEEEEEcCeEEEEEecccCC----------------------
Q 009923 306 DFDGIERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMG---------------------- 358 (522)
Q Consensus 306 ~~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------------------- 358 (522)
++++|+|||.+|||++++ ++++++++++|+|+.|++.. ++|+++.+|..+
T Consensus 282 ~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 358 (520)
T cd03344 282 RKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYD 358 (520)
T ss_pred cHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 889999999999999999 78888888999999999655 788999888664
Q ss_pred -------------ceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHH
Q 009923 359 -------------QACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 425 (522)
Q Consensus 359 -------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~ 425 (522)
+.|||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|++++. .++++|++
T Consensus 359 ~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~-g~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~ 436 (520)
T cd03344 359 KEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEE-GIVPGGGVALLRASPALDKLKA-LNGDEKLG 436 (520)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCCcHHHHHHHHHHHHhcc-CChHHHHH
Confidence 59999999999999999999999999999999987 5999999999999999999988 89999999
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHH
Q 009923 426 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMIL 505 (522)
Q Consensus 426 ~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL 505 (522)
+++|++||+.||++|++|||+|+.+++++|+..|. ++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||
T Consensus 437 ~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL 512 (520)
T cd03344 437 IEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLL 512 (520)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988763 89999999999999999999999999999999999999999
Q ss_pred hhhHHHh
Q 009923 506 RVDEIIT 512 (522)
Q Consensus 506 ~iD~iI~ 512 (522)
++|.+|.
T Consensus 513 ~id~~i~ 519 (520)
T cd03344 513 TTEALVV 519 (520)
T ss_pred hhheEEe
Confidence 9999875
No 33
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-90 Score=676.76 Aligned_cols=504 Identities=38% Similarity=0.569 Sum_probs=469.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCC
Q 009923 11 ANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGD 87 (522)
Q Consensus 11 ~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GD 87 (522)
.+...|+.+|..|..|+.++++++++||||-|++|| ++ |++++||||+|||+.+.++||++++|++.++.|++++||
T Consensus 12 ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgD 91 (545)
T KOG0360|consen 12 GERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGD 91 (545)
T ss_pred CCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccC
Confidence 356789999999999999999999999999999999 77 999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhh-cccccCCchhhhHHHHHHHHHHHhhccccchhh
Q 009923 88 GTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQ-KVVDNKENAETFKSDLMKIAMTTLSSKILSQDK 166 (522)
Q Consensus 88 Gtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~ 166 (522)
|||++++++++||+++.+|+..++||+.|++||+.|+..+++++.+ .+.|++.. ..+.|.++++|+++||++....
T Consensus 92 gttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~l---g~~~Lin~~ktsmsSK~i~~ds 168 (545)
T KOG0360|consen 92 GTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSL---GTQILINLAKTSMSSKIIGMDS 168 (545)
T ss_pred CceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhc---chHHHHHHHHhhhcceecccch
Confidence 9999999999999999999999999999999999999999999965 56666532 2478999999999999999999
Q ss_pred hHHHHHHHHHHHhhcC-------CCCCcCeEEEEecCCCCcCcceeeeEEEeccCC-CCCCccccCcceEEeeccccccc
Q 009923 167 EHFGQLAVDAVMRLKG-------STNLESIQIIKKPGGSLKDSFLDEGFILDKKIG-IGQPKRIENAKILVANTAMDTDK 238 (522)
Q Consensus 167 ~~la~lv~~a~~~~~~-------~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~-~~~~~~i~~~rIll~~~~L~~~~ 238 (522)
++|++++++|+..+.- ....+.++|.|..|.+.-+|.+++|+.++.... ..||..++++||++++++|...+
T Consensus 169 ~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~k 248 (545)
T KOG0360|consen 169 DFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTK 248 (545)
T ss_pred HHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccccccc
Confidence 9999999999987621 234578999999999999999999999998764 46899999999999999998876
Q ss_pred ccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhC
Q 009923 239 VKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTG 318 (522)
Q Consensus 239 ~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tG 318 (522)
... +..+.+.++++++.+.+.|....++.+++|++.++|+|+++++|||..++||.+.|++++||+.+++|++|+++||
T Consensus 249 m~l-Gv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatG 327 (545)
T KOG0360|consen 249 MKL-GVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATG 327 (545)
T ss_pred ccc-cceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhC
Confidence 554 5788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeccccCCC------CCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhh
Q 009923 319 GEIASTFDNP------ESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVN 392 (522)
Q Consensus 319 a~ii~~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 392 (522)
+++++++.++ .+..+|+|+.|.+.+|+++.++++.+.+.. .|+|+|||++++.+||++|++|||+|+++..++
T Consensus 328 at~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLe 406 (545)
T KOG0360|consen 328 ATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLE 406 (545)
T ss_pred CeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhc
Confidence 9999998754 456699999999999999999999998776 999999999999999999999999999999999
Q ss_pred CCccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhc--CC------C
Q 009923 393 DSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQK--EG------C 464 (522)
Q Consensus 393 ~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~--~~------~ 464 (522)
++++||||||+|.+|+.+|++|+.+.++++|.++..|+.||..||++|+-|++.|+.|+++++++.|.. .+ .
T Consensus 407 s~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k 486 (545)
T KOG0360|consen 407 SKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLK 486 (545)
T ss_pred cCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccch
Confidence 999999999999999999999999999999999999999999999999999999999999999998842 22 4
Q ss_pred ceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCC
Q 009923 465 PAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 519 (522)
Q Consensus 465 ~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~~~~ 519 (522)
|+|+|+.+|++.|.++.|++||..+|...|+.|+|.+.++||||+.|.-.|..+.
T Consensus 487 ~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 487 QYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred hhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccccc
Confidence 8999999999999999999999999999999999999999999999998887654
No 34
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.7e-87 Score=718.20 Aligned_cols=459 Identities=22% Similarity=0.345 Sum_probs=412.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChH----HHHHHHHHhhccccc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPA----AKVLVDISKVQDDEV 85 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~----a~ll~~~~~~~~~~~ 85 (522)
...|++++..|++|+.+++++++|||||+|++|| ++ |+++|||||+||+++|+++||+ ++|++++|++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~ 85 (544)
T PRK12850 6 IRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLA 85 (544)
T ss_pred ecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchh
Confidence 4557889999999999999999999999999999 66 9999999999999999999999 999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchh
Q 009923 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165 (522)
Q Consensus 86 GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 165 (522)
||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++++|++. .+.|.++++++++ .
T Consensus 86 GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~-----~~~l~~va~~s~~------~ 154 (544)
T PRK12850 86 GDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTS-----SKEIAQVATISAN------G 154 (544)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHhcC------C
Confidence 9999999999999999999999999999999999999999999999999999863 3679999988754 3
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCC--------CCccccCcceEEeecccccc
Q 009923 166 KEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIG--------QPKRIENAKILVANTAMDTD 237 (522)
Q Consensus 166 ~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~--------~~~~i~~~rIll~~~~L~~~ 237 (522)
++.+++++++|+..++.+... +++..+..| .++++++|++|++++.+. +|+.++||+|+++|+.+
T Consensus 155 ~~~l~~lv~eAv~~vg~~g~i-~v~~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i--- 227 (544)
T PRK12850 155 DESIGEMIAEAMDKVGKEGVI-TVEEAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI--- 227 (544)
T ss_pred HHHHHHHHHHHHHHhcccCce-eeEEccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc---
Confidence 789999999999998754321 222222233 688999999999887542 47889999999999743
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCC------eEEec-----CC
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGI------LAIEH-----AD 306 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I------~~i~~-----v~ 306 (522)
++.++ +..+++.+.+.++++|+++++|++.++++|..++| +++++ ++
T Consensus 228 -----------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~ 285 (544)
T PRK12850 228 -----------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRR 285 (544)
T ss_pred -----------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCccc
Confidence 22222 55678889999999999999999999999999999 99887 88
Q ss_pred hhhHHHHHHHhCCeecc-----ccCCCCCCCccccceEEEEEEcCeEEEEEecccCC-----------------------
Q 009923 307 FDGIERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMG----------------------- 358 (522)
Q Consensus 307 ~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 358 (522)
+++|+|||.+|||++++ +++++++.++|+|+.|++.. ++|++|.+|.++
T Consensus 286 ~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (544)
T PRK12850 286 KAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDR 362 (544)
T ss_pred HHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 99999999999999999 68888888999999998654 889999988764
Q ss_pred ------------ceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHHH
Q 009923 359 ------------QACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAI 426 (522)
Q Consensus 359 ------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~ 426 (522)
+.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++..|+++ ...++++|+++
T Consensus 363 ~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~-g~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i 440 (544)
T PRK12850 363 EKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEE-GIVPGGGVALLRARSALRGL-KGANADETAGI 440 (544)
T ss_pred HHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCcHHHHHHHHHHHhc-cCCChHHHHHH
Confidence 48999999999999999999999999999999987 69999999999999999998 67789999999
Q ss_pred HHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHHh
Q 009923 427 EAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILR 506 (522)
Q Consensus 427 ~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 506 (522)
++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+
T Consensus 441 ~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~ 516 (544)
T PRK12850 441 DIVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLIT 516 (544)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998765 4789999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCCCCCC
Q 009923 507 VDEIITCAPRRRED 520 (522)
Q Consensus 507 iD~iI~~~~~~~~~ 520 (522)
+|++|..+|++.++
T Consensus 517 id~iI~~~~~~~~~ 530 (544)
T PRK12850 517 TEAMVAEAPKKAAA 530 (544)
T ss_pred HHHhhccCCCCCCC
Confidence 99999998876443
No 35
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.4e-87 Score=716.70 Aligned_cols=456 Identities=21% Similarity=0.330 Sum_probs=412.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccc----cChHHHHHHHHHhhccccc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHI----DNPAAKVLVDISKVQDDEV 85 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~----~hP~a~ll~~~~~~~~~~~ 85 (522)
...|.++++.|++|+..++++++|||||+||+|| .+ |+++|||||+||+++|++ +||+++|+++++++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~ 85 (545)
T PRK12852 6 VKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLA 85 (545)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCcee
Confidence 4457789999999999999999999999999999 66 999999999999999999 5999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchh
Q 009923 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165 (522)
Q Consensus 86 GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 165 (522)
||||||+++|+++||+++.+|+++|+||..|++||+.|++.+++.|+++++|++.+ +++.++++++.+ .
T Consensus 86 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~-----~~l~~va~~s~~------~ 154 (545)
T PRK12852 86 GDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASS-----AEIAQVGTISAN------G 154 (545)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCH-----HHHHHHHhhhcC------C
Confidence 99999999999999999999999999999999999999999999999999998643 568899877654 3
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCC-cCcceeeeEEEeccCCC--------CCCccccCcceEEeeccccc
Q 009923 166 KEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSL-KDSFLDEGFILDKKIGI--------GQPKRIENAKILVANTAMDT 236 (522)
Q Consensus 166 ~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~-~dS~l~~Givl~~~~~~--------~~~~~i~~~rIll~~~~L~~ 236 (522)
++.+++++++|+..++.+. .|.+. .|+.. .+|++++|++|++++.+ .|+..++||+|+++++.
T Consensus 155 ~~~l~~li~eA~~~vg~~g---~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~--- 226 (545)
T PRK12852 155 DAAIGKMIAQAMQKVGNEG---VITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKK--- 226 (545)
T ss_pred hHHHHHHHHHHHHHhccCC---ceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCc---
Confidence 7889999999999997643 34443 47775 79999999999998753 26788999999998753
Q ss_pred ccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHc------CCeEEecCC----
Q 009923 237 DKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADA------GILAIEHAD---- 306 (522)
Q Consensus 237 ~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~------~I~~i~~v~---- 306 (522)
+++++ .+..+++.+.+.++++|+++++|++.++++|..+ +|+++++.+
T Consensus 227 -----------i~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~ 284 (545)
T PRK12852 227 -----------LSGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDR 284 (545)
T ss_pred -----------cCCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccc
Confidence 23333 3445678899999999999999999999999876 799999766
Q ss_pred -hhhHHHHHHHhCCeecc-----ccCCCCCCCccccceEEEEEEcCeEEEEEecccC-----------------------
Q 009923 307 -FDGIERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEM----------------------- 357 (522)
Q Consensus 307 -~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~----------------------- 357 (522)
+++|+|||.+|||++++ +++++++.++|+|+.+++.. +++++|.++..
T Consensus 285 r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (545)
T PRK12852 285 RKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYD 361 (545)
T ss_pred hHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 88999999999999999 68888888999999999655 78888888765
Q ss_pred ------------CceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHH
Q 009923 358 ------------GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 425 (522)
Q Consensus 358 ------------~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~ 425 (522)
++++||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++.+|++++.. ++++|++
T Consensus 362 ~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~-g~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~ 439 (545)
T PRK12852 362 REKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQE-GIVPGGGVALLRAKKAVGRINND-NADVQAG 439 (545)
T ss_pred HHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCchHHHHHHHHHHHHhhcC-CcHHHHH
Confidence 378999999999999999999999999999999987 69999999999999999999877 7899999
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHH
Q 009923 426 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMIL 505 (522)
Q Consensus 426 ~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL 505 (522)
+++|++||+.||++|++|||+|+.+++++|+..| ++++|||+.+|++.||++.|||||+.+|.++|+.|+|+|++||
T Consensus 440 i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL 516 (545)
T PRK12852 440 INIVLKALEAPIRQIAENAGVEGSIVVGKILENK---SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLV 516 (545)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998877 4689999999999999999999999999999999999999999
Q ss_pred hhhHHHhcCCCC
Q 009923 506 RVDEIITCAPRR 517 (522)
Q Consensus 506 ~iD~iI~~~~~~ 517 (522)
+||++|..+|++
T Consensus 517 ~id~iI~~~~~~ 528 (545)
T PRK12852 517 TTEAMVAELPKK 528 (545)
T ss_pred hHHHHhhcCCCC
Confidence 999999988875
No 36
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=9.3e-87 Score=711.07 Aligned_cols=453 Identities=25% Similarity=0.358 Sum_probs=409.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccCh----HHHHHHHHHhhccccc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEV 85 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP----~a~ll~~~~~~~~~~~ 85 (522)
...|++++++|++|+..++++++|||||+|++|| .+ |+++|||||+||+|+|++.|| +++++++++++|++++
T Consensus 4 ~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~ 83 (524)
T TIGR02348 4 IKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVA 83 (524)
T ss_pred ccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCcee
Confidence 4567899999999999999999999999999999 66 999999999999999999999 9999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchh
Q 009923 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165 (522)
Q Consensus 86 GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 165 (522)
||||||+++|+++||+++.+|+++|+||..|++||+.|++.+++.|+++++|++ + .+.+.++++|+. ++
T Consensus 84 GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~-~----~~~l~~va~ts~------~~ 152 (524)
T TIGR02348 84 GDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK-G----KKEIAQVATISA------NN 152 (524)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC-C----HHHHHHHHHHhc------cC
Confidence 999999999999999999999999999999999999999999999999999986 3 367999998875 35
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCC-cCcceeeeEEEeccCCCC--------CCccccCcceEEeeccccc
Q 009923 166 KEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSL-KDSFLDEGFILDKKIGIG--------QPKRIENAKILVANTAMDT 236 (522)
Q Consensus 166 ~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~-~dS~l~~Givl~~~~~~~--------~~~~i~~~rIll~~~~L~~ 236 (522)
++++++++++|+..++.+. .|.|. .|+.. ++|++++|++|++++.+. +|+.++||+|+++++.+
T Consensus 153 ~~~l~~lv~~A~~~v~~~~---~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i-- 225 (524)
T TIGR02348 153 DEEIGSLIAEAMEKVGKDG---VITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI-- 225 (524)
T ss_pred hHHHHHHHHHHHHHhCcCC---cEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc--
Confidence 8999999999999987553 34444 36666 679999999999987532 47889999999999743
Q ss_pred ccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHc------CCeEEecCCh---
Q 009923 237 DKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADA------GILAIEHADF--- 307 (522)
Q Consensus 237 ~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~------~I~~i~~v~~--- 307 (522)
++++++ ..+++.+.+.++++|+++++|++.++++|..+ +|++++++++
T Consensus 226 ------------~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~ 282 (524)
T TIGR02348 226 ------------SNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDR 282 (524)
T ss_pred ------------CCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccch
Confidence 334443 45688899999999999999999999999887 8899998865
Q ss_pred --hhHHHHHHHhCCeecc-----ccCCCCCCCccccceEEEEEEcCeEEEEEecccCCc---------------------
Q 009923 308 --DGIERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQ--------------------- 359 (522)
Q Consensus 308 --~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~--------------------- 359 (522)
++|+|||.+|||++++ +++++++.++|+|+.+++. .++++++.++..++
T Consensus 283 r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~ 359 (524)
T TIGR02348 283 RKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVD---KDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYD 359 (524)
T ss_pred hhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEe---ecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 7999999999999999 8999999999999999965 37888998875543
Q ss_pred --------------eEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHH
Q 009923 360 --------------ACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 425 (522)
Q Consensus 360 --------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~ 425 (522)
.+||+|||+|+.+++|++|+++||++++|+++++ ++|||||++|+++|..|++ +...++++|++
T Consensus 360 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~-g~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~ 437 (524)
T TIGR02348 360 REKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEE-GIVPGGGVALLRAAAALEG-LKGDNEDEAIG 437 (524)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCcHHHHHHHHHHHH-hccCChHHHHH
Confidence 7899999999999999999999999999999987 5999999999999999998 77788999999
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHH
Q 009923 426 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMIL 505 (522)
Q Consensus 426 ~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL 505 (522)
+++|++||+.||++|++|||+|+.+++++|+.. .+ ++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||
T Consensus 438 ~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL 513 (524)
T TIGR02348 438 IDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLL 513 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999764 23 48999999999999999999999999999999999999999
Q ss_pred hhhHHHhcCC
Q 009923 506 RVDEIITCAP 515 (522)
Q Consensus 506 ~iD~iI~~~~ 515 (522)
+||++|...|
T Consensus 514 ~id~ii~~~~ 523 (524)
T TIGR02348 514 TTEAVVADKP 523 (524)
T ss_pred hHHHHhhcCC
Confidence 9999998755
No 37
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.9e-85 Score=701.80 Aligned_cols=457 Identities=21% Similarity=0.305 Sum_probs=403.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHH----HHHHHHhhccccc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAK----VLVDISKVQDDEV 85 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~----ll~~~~~~~~~~~ 85 (522)
...|.++|++.++||..++++++|||||+||+|| .+ |+++|||||+||||+|+++||+++ |+++++++|++++
T Consensus 5 ~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~ 84 (529)
T CHL00093 5 ILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVA 84 (529)
T ss_pred eecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCcee
Confidence 3457789999999999999999999999999999 66 999999999999999999999995 8888999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchh
Q 009923 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165 (522)
Q Consensus 86 GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 165 (522)
||||||+++|+++||+++.+|+++|+||..|++||+.|.+.+++.|+++++|++ + .+.|.++++++.+ +
T Consensus 85 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~-d----~~~L~~VA~ts~~------~ 153 (529)
T CHL00093 85 GDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE-D----IQAITQVASISAG------N 153 (529)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHhcc------C
Confidence 999999999999999999999999999999999999999999999999999987 3 3679999988753 7
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCC----CCc----cccCcceEEeecccccc
Q 009923 166 KEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIG----QPK----RIENAKILVANTAMDTD 237 (522)
Q Consensus 166 ~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~----~~~----~i~~~rIll~~~~L~~~ 237 (522)
++.|++++++|+..++.++ .|.+. -.++...++++++|++|++++.+. +|+ .++||+|++++++|++.
T Consensus 154 ~~~l~~lv~eAv~~vg~~g---~i~~~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~ 229 (529)
T CHL00093 154 DEEVGSMIADAIEKVGREG---VISLE-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLV 229 (529)
T ss_pred hHHHHHHHHHHHHHhccCC---ceeec-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCch
Confidence 8999999999999997654 23331 122345678999999999987532 243 58999999999998753
Q ss_pred cccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHH--HHHHH----cCCeEEecCCh----
Q 009923 238 KVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPE--ELFAD----AGILAIEHADF---- 307 (522)
Q Consensus 238 ~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~--~~l~~----~~I~~i~~v~~---- 307 (522)
+ ..+...++.+.+.+.++++++++|++.++ .|+++ .+|++++++++
T Consensus 230 ~------------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~ 285 (529)
T CHL00093 230 Q------------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRR 285 (529)
T ss_pred H------------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcch
Confidence 2 11456778888999999999999998444 55587 59999999855
Q ss_pred -hhHHHHHHHhCCeecc-----ccCCCCCCCccccceEEEEEEcCeEEEEEec---------ccC---------------
Q 009923 308 -DGIERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGEDKLIHFSG---------VEM--------------- 357 (522)
Q Consensus 308 -~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~---------~~~--------------- 357 (522)
++|+|||.+|||++++ +++++++.++|+|+.+++.. +++++|++ |..
T Consensus 286 k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 362 (529)
T CHL00093 286 KAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKE 362 (529)
T ss_pred HHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 7899999999999999 68899988999999999653 78888863 322
Q ss_pred ----------CceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHh-cCCChhHHHH
Q 009923 358 ----------GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELAR-KTPGKKSHAI 426 (522)
Q Consensus 358 ----------~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~-~~~~~~~~~~ 426 (522)
+..+||+|||+|+.+++|.+|+++||++++|+++++ ++|||||++|++||..|++++. ..++++|+++
T Consensus 363 ~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~-gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i 441 (529)
T CHL00093 363 KLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEE-GIVPGGGATLVHLSENLKTWAKNNLKEDELIGA 441 (529)
T ss_pred HHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc-CcccCCcHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 148889999999999999999999999999999987 5999999999999999999987 7899999999
Q ss_pred HHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHHh
Q 009923 427 EAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILR 506 (522)
Q Consensus 427 ~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 506 (522)
++|++||+.||++|++|||+|+.+++++++.. +.++|||+.+|++.||++.|||||+.||.++|+.|+|+|++||+
T Consensus 442 ~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~ 517 (529)
T CHL00093 442 LIVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILT 517 (529)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999753 45899999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCC
Q 009923 507 VDEIITCAPR 516 (522)
Q Consensus 507 iD~iI~~~~~ 516 (522)
||++|...|+
T Consensus 518 id~ii~~~~~ 527 (529)
T CHL00093 518 TECIIVDKKE 527 (529)
T ss_pred HHHHHHcCCC
Confidence 9999998874
No 38
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.5e-84 Score=694.93 Aligned_cols=457 Identities=22% Similarity=0.351 Sum_probs=409.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhcccc----ChHHHHHHHHHhhccccc
Q 009923 13 EEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHID----NPAAKVLVDISKVQDDEV 85 (522)
Q Consensus 13 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~----hP~a~ll~~~~~~~~~~~ 85 (522)
...|.+++..|++|+..+++++++||||+||+|| .+ |+++|||||+||+++|+++ ||+++|+++++++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~ 85 (546)
T PRK14104 6 VKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAA 85 (546)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccc
Confidence 4557899999999999999999999999999999 65 9999999999999999998 999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchh
Q 009923 86 GDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 165 (522)
Q Consensus 86 GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 165 (522)
||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|++.+ +++.++++++.+ +
T Consensus 86 GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~-----~~l~~va~~s~~------~ 154 (546)
T PRK14104 86 GDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSN-----DEIAQVGTISAN------G 154 (546)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCH-----HHHHHHHHHHhc------C
Confidence 99999999999999999999999999999999999999999999999999998643 568899887654 4
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCC-cCcceeeeEEEeccCCCC--------CCccccCcceEEeeccccc
Q 009923 166 KEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSL-KDSFLDEGFILDKKIGIG--------QPKRIENAKILVANTAMDT 236 (522)
Q Consensus 166 ~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~-~dS~l~~Givl~~~~~~~--------~~~~i~~~rIll~~~~L~~ 236 (522)
++.+++++++|+..++.++ .|.+. .++.. .++++++|++|++++.+. ++.++++|+|++++..
T Consensus 155 d~~i~~lv~~Av~~vg~~g---~i~v~--~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~--- 226 (546)
T PRK14104 155 DAEIGKFLADAMKKVGNEG---VITVE--EAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK--- 226 (546)
T ss_pred chHHHHHHHHHHHHhccCC---ceeeE--ecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh---
Confidence 5789999999999997654 34444 33455 589999999999987431 3566788999988621
Q ss_pred ccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHH------cCCeEEecCC----
Q 009923 237 DKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFAD------AGILAIEHAD---- 306 (522)
Q Consensus 237 ~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~------~~I~~i~~v~---- 306 (522)
++++++ +..+++.+.+.+++||+++++|++.++++|.. .+|+++++++
T Consensus 227 -----------i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~ 284 (546)
T PRK14104 227 -----------LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDR 284 (546)
T ss_pred -----------hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcc
Confidence 344433 44578889999999999999999999999985 5789998877
Q ss_pred -hhhHHHHHHHhCCeeccc-----cCCCCCCCccccceEEEEEEcCeEEEEEecccCC----------------------
Q 009923 307 -FDGIERLALVTGGEIAST-----FDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMG---------------------- 358 (522)
Q Consensus 307 -~~~L~~ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------------------- 358 (522)
+++|+|||.+|||+++++ ++++++.++|+|+.++ ++.++++++.+|..+
T Consensus 285 r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (546)
T PRK14104 285 RKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVM---IDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYD 361 (546)
T ss_pred hHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEE---EcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 789999999999999999 8889888999999988 588899999988764
Q ss_pred -------------ceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHH
Q 009923 359 -------------QACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 425 (522)
Q Consensus 359 -------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~ 425 (522)
+.+||+|||+|+.+++|++|+++||++++++++++ ++|||||++|++++..|+++. ..+++++++
T Consensus 362 ~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~-g~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~ 439 (546)
T PRK14104 362 REKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEE-GIVPGGGVALLRASEQLKGIK-TKNDDQKTG 439 (546)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc-CcCcCchHHHHHHHHHHHHhh-cCChHHHHH
Confidence 89999999999999999999999999999999987 599999999999999999884 357899999
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHH
Q 009923 426 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMIL 505 (522)
Q Consensus 426 ~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL 505 (522)
+++|++||+.||++|++|||+|+.+++.+|+..| .+++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||
T Consensus 440 i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL 516 (546)
T PRK14104 440 VEIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLI 516 (546)
T ss_pred HHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997654 4579999999999999999999999999999999999999999
Q ss_pred hhhHHHhcCCCCC
Q 009923 506 RVDEIITCAPRRR 518 (522)
Q Consensus 506 ~iD~iI~~~~~~~ 518 (522)
+||++|...|++.
T Consensus 517 ~id~~I~~~~~~~ 529 (546)
T PRK14104 517 TTEAMVAELPKKG 529 (546)
T ss_pred HHHHHHhcCCcCC
Confidence 9999998887653
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=6e-84 Score=693.58 Aligned_cols=458 Identities=22% Similarity=0.334 Sum_probs=407.7
Q ss_pred hhhH--HHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccCh----HHHHHHHHHhhcccc
Q 009923 14 EKGE--RARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDDE 84 (522)
Q Consensus 14 ~~g~--~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP----~a~ll~~~~~~~~~~ 84 (522)
..|+ ++|+..++|+..++++|++||||+||+|| .+ |+++|||||+||+|+|++.|| +++|++++|++|+++
T Consensus 60 ~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~e 139 (600)
T PLN03167 60 HFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDL 139 (600)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhh
Confidence 3455 79999999999999999999999999999 66 999999999999999999999 599999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccch
Q 009923 85 VGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQ 164 (522)
Q Consensus 85 ~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~ 164 (522)
+||||||+++|+++||+++.+++.+|+||..|++||+.|.+.+++.|+++++|++ + +.|.+++.++.+
T Consensus 140 vGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~-d-----~~L~~vA~tS~~------ 207 (600)
T PLN03167 140 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE-D-----SELADVAAVSAG------ 207 (600)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC-H-----HHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999999999999999999999885 2 458999988764
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCc-ceeeeEEEeccCCC--------CCCccccCcceEEeecccc
Q 009923 165 DKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDS-FLDEGFILDKKIGI--------GQPKRIENAKILVANTAMD 235 (522)
Q Consensus 165 ~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS-~l~~Givl~~~~~~--------~~~~~i~~~rIll~~~~L~ 235 (522)
+++.|++|+++|+..+++++ .|. ..+|++.+|+ ++++|++|++++.+ +|+++++||+|+++++.
T Consensus 208 ~~~~i~~liaeAv~~Vg~~g---~i~--v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~-- 280 (600)
T PLN03167 208 NNYEVGNMIAEAMSKVGRKG---VVT--LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK-- 280 (600)
T ss_pred CcHHHHHHHHHHHHHhccCC---cEE--eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc--
Confidence 56799999999999997654 232 3479999997 89999999999743 47889999999999862
Q ss_pred cccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHH------HcCCeEEecCC---
Q 009923 236 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFA------DAGILAIEHAD--- 306 (522)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~------~~~I~~i~~v~--- 306 (522)
+++.+++.++. +.+.+.++++++++++|++.++++|. ..+|+++++++
T Consensus 281 ------------i~~~~~l~~~l-----------e~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~ 337 (600)
T PLN03167 281 ------------ITNARDLIGIL-----------EDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGE 337 (600)
T ss_pred ------------cCCHHHHHHHH-----------HHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCc
Confidence 45666666543 35666889999999999999999998 78899999986
Q ss_pred --hhhHHHHHHHhCCeecc-----ccCCCCCCCccccceEEEEE-----EcC--------eEEEEEeccc----------
Q 009923 307 --FDGIERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIM-----IGE--------DKLIHFSGVE---------- 356 (522)
Q Consensus 307 --~~~L~~ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~~~~---------- 356 (522)
+++|+|||.+|||++++ ++++++..++|+|+.|++.. +|+ +++.+|+++.
T Consensus 338 ~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~ 417 (600)
T PLN03167 338 RKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKE 417 (600)
T ss_pred chHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHH
Confidence 78999999999999999 67888888999999999876 776 4777777653
Q ss_pred --C------CceEEEE-ecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHH-H
Q 009923 357 --M------GQACTIV-LRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA-I 426 (522)
Q Consensus 357 --~------~~~~TIl-l~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~-~ 426 (522)
. .+.+|++ |||+|+.+++|++|+++||++++|++++++ +|||||++|++|+.+|++++...++++|++ +
T Consensus 418 ~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~ 496 (600)
T PLN03167 418 KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGA 496 (600)
T ss_pred HHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence 0 1245555 999999999999999999999999999877 999999999999999999988887877754 9
Q ss_pred HHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHHh
Q 009923 427 EAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILR 506 (522)
Q Consensus 427 ~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~ 506 (522)
++|++||+.||++|++|||+|+.+++.+|+.. +++++|||+.+|++.||++.|||||+.||+++|+.|+++|++||+
T Consensus 497 ~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~ 573 (600)
T PLN03167 497 DIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLT 573 (600)
T ss_pred HHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999743 356899999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCCC
Q 009923 507 VDEIITCAPRR 517 (522)
Q Consensus 507 iD~iI~~~~~~ 517 (522)
||++|...|.+
T Consensus 574 iD~iI~~~~~~ 584 (600)
T PLN03167 574 SDCVVVEIKEP 584 (600)
T ss_pred HHHHhhcCCCC
Confidence 99999987654
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-81 Score=609.18 Aligned_cols=502 Identities=28% Similarity=0.459 Sum_probs=472.1
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcc
Q 009923 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQD 82 (522)
Q Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~ 82 (522)
.++..+...+-..+...|+.++..+.+++++.+||.|..|| .+ |++.+|+||.+.+++|+++||.+-++..++.+||
T Consensus 5 ~lnpkAEv~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqd 84 (520)
T KOG0359|consen 5 LLNPKAEVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQD 84 (520)
T ss_pred CCCcHHHHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhh
Confidence 34555556666778889999999999999999999999999 77 9999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhcccc
Q 009923 83 DEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKIL 162 (522)
Q Consensus 83 ~~~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~ 162 (522)
+..||||||+|+|+++|+++|..++..|+||..|++||+.|.+.++++|+..+.+++ ++.|..+++|++++|+.
T Consensus 85 d~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~------~~~L~~va~tsl~Tkv~ 158 (520)
T KOG0359|consen 85 DITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD------RETLKDVARTSLRTKVH 158 (520)
T ss_pred cccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh------HHHHHHHHHHhhcCccc
Confidence 999999999999999999999999999999999999999999999999996665554 46899999999999999
Q ss_pred chhhhHHHHHHHHHHHhhc---CCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeeccccccc
Q 009923 163 SQDKEHFGQLAVDAVMRLK---GSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMDTDK 238 (522)
Q Consensus 163 ~~~~~~la~lv~~a~~~~~---~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L~~~~ 238 (522)
..-.+.+++++++|+..+. +++|+.+++|.+..-++..|+.+++|++++++..| .||+.++|+.|+++|.+|||++
T Consensus 159 ~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK 238 (520)
T KOG0359|consen 159 AELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEK 238 (520)
T ss_pred HHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccc
Confidence 9999999999999999875 24678899999999999999999999999999765 5999999999999999999999
Q ss_pred ccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCC----cEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHH
Q 009923 239 VKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGI----NCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLA 314 (522)
Q Consensus 239 ~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v----~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia 314 (522)
++.+ +.+-+++.+|.+.+...|++++.+.+.+|++++- -+|++|+||||..++.|++.||++++|.+++.|||+.
T Consensus 239 ~Ein-sgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~ 317 (520)
T KOG0359|consen 239 PEIN-SGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLV 317 (520)
T ss_pred cccc-cchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHH
Confidence 9987 6788999999999999999999999999987663 4789999999999999999999999999999999999
Q ss_pred HHhCCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCC
Q 009923 315 LVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDS 394 (522)
Q Consensus 315 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~ 394 (522)
.+||+..+++++++++..+|+|+.|++.++|+++|+|+++|+++++|||+++||+++.+.+++++++|+++++++++++.
T Consensus 318 lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~ 397 (520)
T KOG0359|consen 318 LACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDK 397 (520)
T ss_pred HhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCc
Q 009923 395 RVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGS 474 (522)
Q Consensus 395 ~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (522)
.++||+|++|..++.+|+...++.+++.++++++|++||..+|++|++|+|+|+.+.+.+|...|..+ ..|+|..+|+
T Consensus 398 ~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~ 475 (520)
T KOG0359|consen 398 CGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGE 475 (520)
T ss_pred ccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCC
Confidence 99999999999999999988888999999999999999999999999999999999999999988655 4599999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHHhcCCC
Q 009923 475 VGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPR 516 (522)
Q Consensus 475 ~~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~~ 516 (522)
..+....||||.+.||.+.|..++-+|+.||-+|+|+++...
T Consensus 476 ~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~~ 517 (520)
T KOG0359|consen 476 ECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGMS 517 (520)
T ss_pred ccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999988653
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-68 Score=503.15 Aligned_cols=371 Identities=35% Similarity=0.526 Sum_probs=351.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-cC--CCeEEecChHHHhhhccccChHHHHHHHHHhhcccccCC
Q 009923 11 ANEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG-RG--REVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGD 87 (522)
Q Consensus 11 ~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~-~~--g~~~iTnDg~tIlk~l~~~hP~a~ll~~~~~~~~~~~GD 87 (522)
-....|.++.++++-+.+++++++++|+||+|++|+ .. |++++|||| .|++++++...+..|+.++||
T Consensus 21 ~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgd 91 (400)
T KOG0357|consen 21 KDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGD 91 (400)
T ss_pred CchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhcc
Confidence 357899999999999999999999999999999999 55 999999999 789999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccchhhh
Q 009923 88 GTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKE 167 (522)
Q Consensus 88 Gtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ 167 (522)
|||.+++|++.++.++.+++..|+||..|.+||.++...+++.|++++-+.+
T Consensus 92 GtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------------------- 143 (400)
T KOG0357|consen 92 GTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------------------- 143 (400)
T ss_pred CCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------------------
Confidence 9999999999999999999999999999999999999998888876543211
Q ss_pred HHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcCcceeeeEEEeccCCCCCCccccCcceEEeecccccccccccCeEEE
Q 009923 168 HFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVR 247 (522)
Q Consensus 168 ~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~~~~~~i~~~rIll~~~~L~~~~~~~~~~~~~ 247 (522)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCeeccccCC
Q 009923 248 VDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDN 327 (522)
Q Consensus 248 i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~~ 327 (522)
+..+++++++.|+++++|||+++|.+.++|-+++..+++||.-.++|.||.+||++|++++++
T Consensus 144 -----------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~e 206 (400)
T KOG0357|consen 144 -----------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSE 206 (400)
T ss_pred -----------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhh
Confidence 345788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccceEEEEEEcC--eEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHH
Q 009923 328 PESVKLGHCKLIEEIMIGE--DKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 405 (522)
Q Consensus 328 l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~ 405 (522)
++..++|+|+.|++..+|. +++..+++|++++.+||.+||.++.+++|.+|++|||||++|+++++.++|.|||++|+
T Consensus 207 L~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEi 286 (400)
T KOG0357|consen 207 LTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEI 286 (400)
T ss_pred hCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHh
Confidence 9999999999999999985 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHH-hcCCCceeEEcCCCcccccccCCcc
Q 009923 406 VMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEH-QKEGCPAGIDVISGSVGDMAELGIS 484 (522)
Q Consensus 406 ~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h-~~~~~~~Gid~~~g~~~d~~~~gi~ 484 (522)
.||-.+.+.++++++.+||++++||+||++||..|++|+|++|++.++++++.+ +.+++.+|+|+.-....||.+.+|+
T Consensus 287 scslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vi 366 (400)
T KOG0357|consen 287 SCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVI 366 (400)
T ss_pred hhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccH
Confidence 999999999999999999999999999999999999999999999999999876 3467899999988888999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHhcCC
Q 009923 485 ESFKVKQAVLLSATEAAEMILRVDEIITCAP 515 (522)
Q Consensus 485 dp~~vk~~~l~~A~e~~~~iL~iD~iI~~~~ 515 (522)
||+..|++.+..|++++.|||+||+++....
T Consensus 367 e~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 367 ETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 9999999999999999999999999987654
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-50 Score=403.00 Aligned_cols=453 Identities=24% Similarity=0.349 Sum_probs=369.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc--cC-CCeEEecChHHHhhhcccc----ChHHHHHHHHHhhcccc
Q 009923 12 NEEKGERARMASFVGAMAIADLVKTTLGPKGMSTG--RG-REVTVTNDGATILKSLHID----NPAAKVLVDISKVQDDE 84 (522)
Q Consensus 12 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~--~~-g~~~iTnDg~tIlk~l~~~----hP~a~ll~~~~~~~~~~ 84 (522)
+...|.++|...++|+..|++++..|+||+||+++ +. |.|.|||||.|+.+++.+. +.+|+++++.+.+.++.
T Consensus 18 ~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~ 97 (550)
T KOG0356|consen 18 DIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEE 97 (550)
T ss_pred ccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCc
Confidence 35678899999999999999999999999999999 55 9999999999999999875 66999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCchhhhHHHHHHHHHHHhhccccch
Q 009923 85 VGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQ 164 (522)
Q Consensus 85 ~GDGtts~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~ 164 (522)
.||||||+.+|+.++..++.+-+.+|.+|..|.+|...+.+...+.|.++++|++.. +++.+++..+ .+
T Consensus 98 agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~-----eeIaqVAtiS------An 166 (550)
T KOG0356|consen 98 AGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTP-----EEIAQVATIS------AN 166 (550)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCH-----HHHHHHHhhh------cC
Confidence 999999999999999999999999999999999999999999999999999999976 6788888533 46
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCcCeEEEEecCCCCcC-cceeeeEEEeccCCCCCC----------ccccCcceEEeecc
Q 009923 165 DKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKD-SFLDEGFILDKKIGIGQP----------KRIENAKILVANTA 233 (522)
Q Consensus 165 ~~~~la~lv~~a~~~~~~~~~~~~I~i~~i~Gg~~~d-S~l~~Givl~~~~~~~~~----------~~i~~~rIll~~~~ 233 (522)
++.+..+++.+|+.+++.++- |.+ ..|....| -++.+|+-|++++ -.| .++++|++++.+
T Consensus 167 gD~~ig~li~~a~~kvG~~GV---Itv--~~gkt~~delev~eGmkfdrGy--iSPyfi~~~k~~~~e~e~~~~ll~~-- 237 (550)
T KOG0356|consen 167 GDKEIGNLISDAMKKVGRKGV---ITV--KDGKTLEDELEVIEGMKFDRGY--ISPYFITSSKKQKVEFENALLLLSE-- 237 (550)
T ss_pred CcHHHHHHHHHHHHHhCcCCe---EEe--ecCCccccchhhhhcccccccc--cCccccccchhhhhhhhhhhhhhhh--
Confidence 789999999999999987651 222 35666554 4789999999986 223 345566666543
Q ss_pred cccccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHc------CCeEEecCCh
Q 009923 234 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADA------GILAIEHADF 307 (522)
Q Consensus 234 L~~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~------~I~~i~~v~~ 307 (522)
..+++.+++.+..+.-.. ... -+++.-..++..++..|--+ ++.+++...+
T Consensus 238 ------------kki~~v~~ivp~LE~A~~----------~~~-PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgf 294 (550)
T KOG0356|consen 238 ------------KKISSVQSIVPALELALA----------KRR-PLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGF 294 (550)
T ss_pred ------------hhhhHHHHHhHHHHHhhh----------ccC-ceEEEehhcchhHHHHHHhhhhccceeEEEEecCCC
Confidence 235666666543221111 112 24444445555544444222 3455554444
Q ss_pred -----hhHHHHHHHhCCeeccc------cCCCCCCCccccceEEEEE-----EcC-------------------------
Q 009923 308 -----DGIERLALVTGGEIAST------FDNPESVKLGHCKLIEEIM-----IGE------------------------- 346 (522)
Q Consensus 308 -----~~L~~ia~~tGa~ii~~------~~~l~~~~lG~~~~v~~~~-----ig~------------------------- 346 (522)
..+.+++.+||+.++.. ++..+..++|.|..+.... +.+
T Consensus 295 Gdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~y 374 (550)
T KOG0356|consen 295 GDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374 (550)
T ss_pred cchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 45999999999999974 4566778899999887421 110
Q ss_pred ------eEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCC
Q 009923 347 ------DKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPG 420 (522)
Q Consensus 347 ------~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~ 420 (522)
++...| .+++++|.++|.++.+++|.+.+++||++++++++ ++|+|||||++.++|+..|......-..
T Consensus 375 e~ekl~er~a~l----s~gvavi~vGg~se~Ev~ekk~rv~dalnat~aav-eeGivpGGG~all~~~~~l~~lk~~~~~ 449 (550)
T KOG0356|consen 375 EKEKLNERLAKL----SGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAV-EEGIVPGGGTALLRAIPVLDELKATNNF 449 (550)
T ss_pred hHhHHHHHHHHh----cCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHh-hcCcccCCchHHHHhhhhhhhcccccch
Confidence 122222 25799999999999999999999999999999999 6999999999999999999987653345
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHH
Q 009923 421 KKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEA 500 (522)
Q Consensus 421 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~ 500 (522)
.++.+++++.+||..|..++++|||.|+..++.+++. ..+|||..+|+++||++.||+||+.|.+.+|..|..+
T Consensus 450 ~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~v 523 (550)
T KOG0356|consen 450 DQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGV 523 (550)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHH
Confidence 6778899999999999999999999999999999982 2899999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHhcCCCCC
Q 009923 501 AEMILRVDEIITCAPRRR 518 (522)
Q Consensus 501 ~~~iL~iD~iI~~~~~~~ 518 (522)
+.++++++.+|...|+++
T Consensus 524 asll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 524 ASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred HHHHhhheeEEEeccccc
Confidence 999999999999988764
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.9e-39 Score=317.04 Aligned_cols=227 Identities=23% Similarity=0.362 Sum_probs=208.4
Q ss_pred chhhhHHHHHHHHHHHhhcC------CCCCc-CeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeeccc
Q 009923 163 SQDKEHFGQLAVDAVMRLKG------STNLE-SIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAM 234 (522)
Q Consensus 163 ~~~~~~la~lv~~a~~~~~~------~~~~~-~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L 234 (522)
..|.++|++++++|+..+.. .+|.+ +|+|++++||+++||++++|+++++.+.+ .||+.++||||++++|+|
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~L 96 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPL 96 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeee
Confidence 46789999999999998742 35554 59999999999999999999999998765 599999999999999999
Q ss_pred ccccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHH
Q 009923 235 DTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLA 314 (522)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia 314 (522)
++++++ .+++++..+.+.|++++++++++|.+.|+|+|+++++|++.+++||.++||++++++++++|+|||
T Consensus 97 e~~~~~--------~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa 168 (261)
T cd03334 97 EYQRVE--------NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERIS 168 (261)
T ss_pred cccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHH
Confidence 998864 246788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccc-CCCCCCCccccceEEEEEEcC-----eEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHH
Q 009923 315 LVTGGEIASTF-DNPESVKLGHCKLIEEIMIGE-----DKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLS 388 (522)
Q Consensus 315 ~~tGa~ii~~~-~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~ 388 (522)
++|||++++++ ++++++.+|+|+.|++..+|+ ++|++|++|+.+++|||+|||||+..++|+||+++||+++++
T Consensus 169 ~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~ 248 (261)
T cd03334 169 RCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAAY 248 (261)
T ss_pred HHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999994 588899999999999999996 699999999999999999999999999999999999999999
Q ss_pred HHhhCCccc
Q 009923 389 QTVNDSRVL 397 (522)
Q Consensus 389 ~~~~~~~vv 397 (522)
++..+..++
T Consensus 249 ~~~le~~~~ 257 (261)
T cd03334 249 HLKLETSFL 257 (261)
T ss_pred HHHHhHHHH
Confidence 998765544
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.2e-35 Score=282.74 Aligned_cols=204 Identities=39% Similarity=0.611 Sum_probs=193.0
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHHHHHHhhcC---CCCCcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccc
Q 009923 147 SDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKG---STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRI 222 (522)
Q Consensus 147 ~~l~~i~~t~l~sk~~~~~~~~la~lv~~a~~~~~~---~~~~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i 222 (522)
+.|.++++|+++||+ +.|.+.+++++++|+..++. .++.++|+|++++||+++||++++|++|++++.+ .||+.+
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~ 80 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRL 80 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEc
Confidence 468999999999999 99999999999999999865 3457899999999999999999999999999764 589999
Q ss_pred cCcceEEeecccccccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEE
Q 009923 223 ENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAI 302 (522)
Q Consensus 223 ~~~rIll~~~~L~~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i 302 (522)
+||||++++++|++ +|+++++|++.+++||.++||+++
T Consensus 81 ~n~~Ill~~~~le~------------------------------------------vii~~~~I~~~al~~l~~~~I~~v 118 (209)
T cd03333 81 ENAKILLLDCPLEY------------------------------------------VVIAEKGIDDLALHYLAKAGIMAV 118 (209)
T ss_pred CCCcEEEEeCCeeE------------------------------------------EEEecCcccHHHHHHHHHCCCEEE
Confidence 99999999999876 999999999999999999999999
Q ss_pred ecCChhhHHHHHHHhCCeeccccCCCCCCCccccceEEEEEEcCeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhH
Q 009923 303 EHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHD 382 (522)
Q Consensus 303 ~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~d 382 (522)
+++++++|+|||++|||+++++++++++..+|+|+++++..+|+++|++|++|..+++|||+|||||+.+++|+||+++|
T Consensus 119 ~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~d 198 (209)
T cd03333 119 RRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHD 198 (209)
T ss_pred EeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 009923 383 ALCVLSQTVND 393 (522)
Q Consensus 383 al~~~~~~~~~ 393 (522)
|++++++++++
T Consensus 199 al~~~~~~~~~ 209 (209)
T cd03333 199 ALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHhhC
Confidence 99999999853
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.85 E-value=5.4e-21 Score=211.92 Aligned_cols=233 Identities=22% Similarity=0.308 Sum_probs=203.3
Q ss_pred chhhhHHHHHHHHHHHhhcCCC------C-CcCeEEEEecCCCCcCcceeeeEEEeccCCC-CCCccccCcceEEeeccc
Q 009923 163 SQDKEHFGQLAVDAVMRLKGST------N-LESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAM 234 (522)
Q Consensus 163 ~~~~~~la~lv~~a~~~~~~~~------~-~~~I~i~~i~Gg~~~dS~l~~Givl~~~~~~-~~~~~i~~~rIll~~~~L 234 (522)
..|.+.+..|+.+|...+.++. + .++|+|.+++||...||+++.|+++.+..++ .|+.+.++|||+++.++|
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~l 410 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPL 410 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecch
Confidence 3577888999999999875432 2 3699999999999999999999999998865 499999999999999999
Q ss_pred ccccccccCeEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHH
Q 009923 235 DTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLA 314 (522)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia 314 (522)
++++.... +.+.+ .+.+.|+++++..+.+|....+|+++..++|+..++++|...+|.++-++++.-|+||+
T Consensus 411 eyqrisn~-----lsS~e---tvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIs 482 (1598)
T KOG0230|consen 411 EYQRISNQ-----LSSIE---TVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERIS 482 (1598)
T ss_pred hhhhhhcc-----ccchH---HHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHH
Confidence 99875432 34433 33344899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccccCCCCCCCccccceEEEEEEc-----CeEEEEEecccCCceEEEEecCCCHHHHHHHHHHHhHHHHHHHH
Q 009923 315 LVTGGEIASTFDNPESVKLGHCKLIEEIMIG-----EDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQ 389 (522)
Q Consensus 315 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 389 (522)
++|||.|+++++.++...+|+|+.++...+- .+.+.+|+||+.+.+|||+|||....++.++++.++-+.-+..+
T Consensus 483 R~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~ 562 (1598)
T KOG0230|consen 483 RCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYH 562 (1598)
T ss_pred HHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998866554 57899999999999999999999999999999999999999988
Q ss_pred HhhCCccccCCCch
Q 009923 390 TVNDSRVLFGGGWP 403 (522)
Q Consensus 390 ~~~~~~vvpGGG~~ 403 (522)
+.-+..++.-=|+.
T Consensus 563 l~LE~SflaDe~as 576 (1598)
T KOG0230|consen 563 LALETSFLADEGAS 576 (1598)
T ss_pred HHHhhhhhhccCCc
Confidence 76666666555543
No 46
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=51.79 E-value=41 Score=26.68 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=34.5
Q ss_pred HHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHH
Q 009923 268 KVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERL 313 (522)
Q Consensus 268 ~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~i 313 (522)
..+.|...+++++++. +|.+-+...|.++||.++.. ...+++.+
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~-~~~~i~~~ 88 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQG-AGGDIEEA 88 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEES-TSSBHHHH
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEc-CCCCHHHH
Confidence 4566667899999998 58999999999999999987 44334443
No 47
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=51.12 E-value=56 Score=26.40 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHH
Q 009923 267 EKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERL 313 (522)
Q Consensus 267 ~~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~i 313 (522)
..++.|...++++|++. ++.+.+...|.++||.++...+ ..++.+
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~-~~i~~v 98 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE-GTVEEA 98 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC-CCHHHH
Confidence 35666777999999997 6899999999999999997665 344443
No 48
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=48.55 E-value=66 Score=27.55 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=34.4
Q ss_pred HHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCCh
Q 009923 268 KVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADF 307 (522)
Q Consensus 268 ~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~~ 307 (522)
..+.|++.|+++|++. .+.+-+..+|.++||-+..-.+.
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~ 95 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGG 95 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCC
Confidence 5788899999999999 68999999999999999876663
No 49
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=46.89 E-value=2.3e+02 Score=31.92 Aligned_cols=159 Identities=16% Similarity=0.263 Sum_probs=84.0
Q ss_pred ccCcceEEeecccc-cccccccCeE-EEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCC---cEEEeCCCCCchHHHHHHH
Q 009923 222 IENAKILVANTAMD-TDKVKIYGAR-VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGI---NCFVNRQLIYNFPEELFAD 296 (522)
Q Consensus 222 i~~~rIll~~~~L~-~~~~~~~~~~-~~i~~~~~l~~l~~~e~~~l~~~~~~I~~~~v---~lVl~~~~i~~~~~~~l~~ 296 (522)
+.++-.+.+..+++ .+.+-.+-.+ +.++...+-+.++-+. .| -+++.+.+.|. .+-+....+..+..+|-.+
T Consensus 464 LS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk-~~--LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTRE 540 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAK-RH--LIPKQLKEHGLKKGELTITDEAIKDIIRYYTRE 540 (782)
T ss_pred hhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHH-Hh--cchHHHHHcCCCccceeecHHHHHHHHHHHhHh
Confidence 44444444555565 4444333222 3445544444443322 22 35666776665 5667777788899999999
Q ss_pred cCCeEEecCChhhHHHHHHHhCCeecc-------cc----------------CCC-CCCCccccceEEEEEEcCeEEEEE
Q 009923 297 AGILAIEHADFDGIERLALVTGGEIAS-------TF----------------DNP-ESVKLGHCKLIEEIMIGEDKLIHF 352 (522)
Q Consensus 297 ~~I~~i~~v~~~~L~~ia~~tGa~ii~-------~~----------------~~l-~~~~lG~~~~v~~~~ig~~~~~~~ 352 (522)
+|+--+ .+ ++..|++-.--.++. .+ +.. ....+|...-.-....||+-+. +
T Consensus 541 AGVR~L---eR-~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGGd~L~-I 615 (782)
T COG0466 541 AGVRNL---ER-EIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGGDLLT-I 615 (782)
T ss_pred hhhhHH---HH-HHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcccCccccccCCCCeeEeeeeeecCCceEEE-E
Confidence 998333 32 355555532111111 01 011 1123555544444556776543 3
Q ss_pred eccc-CCceEEEEecCCCHHHHHHHHHHHhHHHHHHHHHhh
Q 009923 353 SGVE-MGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVN 392 (522)
Q Consensus 353 ~~~~-~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 392 (522)
+... .+++ .+.+.|.-...++| +.+=|+..+|+...
T Consensus 616 E~~~~~Gkg-~l~lTG~LGdVMKE---Sa~~A~s~vrs~a~ 652 (782)
T COG0466 616 EAVKMPGKG-KLTLTGSLGDVMKE---SAQAALSYVRSRAE 652 (782)
T ss_pred EEEEecCCc-cEEEeccHHHHHHH---HHHHHHHHHHHHHH
Confidence 4322 3444 89999977777766 56667777766543
No 50
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=39.89 E-value=98 Score=24.83 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=32.5
Q ss_pred HHHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEecCC
Q 009923 268 KVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHAD 306 (522)
Q Consensus 268 ~~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~~v~ 306 (522)
..+.+...++++|++. ++.+.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 4566677899999999 5899999999999999987665
No 51
>smart00574 POX domain associated with HOX domains.
Probab=35.30 E-value=1e+02 Score=26.93 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHh
Q 009923 371 HVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELAR 416 (522)
Q Consensus 371 ~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~ 416 (522)
.+++|++++.+....-++.++..=..|+|+|++-.+.+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 5678888887777776666654444678999988888877776554
No 52
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=34.78 E-value=37 Score=35.82 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=35.0
Q ss_pred HHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhc
Q 009923 377 ERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARK 417 (522)
Q Consensus 377 ~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~ 417 (522)
+|.+.+|+..+|++- +|-+|.|||+-.-.+...|+.+++.
T Consensus 216 ~~eL~~A~~lik~ak-~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSAK-KPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhcC-CCEEEecCceeechHHHHHHHHHHh
Confidence 466788999999995 7999999999999999999988875
No 53
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=29.78 E-value=1.2e+02 Score=26.64 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHh
Q 009923 371 HVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELAR 416 (522)
Q Consensus 371 ~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~ 416 (522)
.+++|++++.+....=++.++..=-.|.|.|++-.+.+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSr 129 (140)
T PF07526_consen 84 SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 5677888777766666655553333578999998888888877654
No 54
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=24.19 E-value=87 Score=21.38 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhh
Q 009923 100 LREAEKLVAAKIHPMTIISGFRMAAECARDALLQ 133 (522)
Q Consensus 100 l~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~ 133 (522)
.+++.+|...|.+..+|.+-+..+...+..+|++
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTS-HHHHHHHHCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 5677888889998889888877777666666543
No 55
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=23.95 E-value=2.1e+02 Score=25.86 Aligned_cols=51 Identities=29% Similarity=0.305 Sum_probs=33.6
Q ss_pred HHHHHHcCCcEEEeCCCCCchHHHHHHHcCCeEEe-cCC--h----hhHHHHHHHhCC
Q 009923 269 VQKIIAHGINCFVNRQLIYNFPEELFADAGILAIE-HAD--F----DGIERLALVTGG 319 (522)
Q Consensus 269 ~~~I~~~~v~lVl~~~~i~~~~~~~l~~~~I~~i~-~v~--~----~~L~~ia~~tGa 319 (522)
++.|.+.+||+|+......+...+.|.+.++.++- ... . +.++.++.++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 46777889999988665444466778999995432 221 2 246677777764
No 56
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=21.20 E-value=1.8e+02 Score=26.05 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhHHHHHHhcCCC
Q 009923 368 ASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLD 447 (522)
Q Consensus 368 ~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~ 447 (522)
|.+..-.+++.-.+.-..-++.-.+.+-++|-.=+ .+.+ ...++++...|++.|-.|-+.||+.
T Consensus 61 p~~m~p~dRK~w~qsE~eRlk~e~e~g~Lipa~eV--------~~~~--------s~~~Kav~q~LetlPD~LERd~gL~ 124 (152)
T PF07278_consen 61 PDDMTPKDRKAWWQSENERLKFEKETGQLIPAEEV--------RREM--------SEMAKAVVQVLETLPDILERDAGLP 124 (152)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcccCcHHHH--------HHHH--------HHHHHHHHHHHHHhhHHHHhcCCCC
Confidence 33334445554444444455555444555543211 1222 2357789999999999999999999
Q ss_pred HH
Q 009923 448 SA 449 (522)
Q Consensus 448 ~~ 449 (522)
|.
T Consensus 125 p~ 126 (152)
T PF07278_consen 125 PE 126 (152)
T ss_pred HH
Confidence 84
Done!