Query 009924
Match_columns 522
No_of_seqs 198 out of 822
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 79.0 3.9 0.00013 42.5 7.6 35 11-45 202-238 (511)
2 3gia_A Uncharacterized protein 65.7 4.6 0.00016 41.1 4.2 14 17-30 195-208 (444)
3 3l1l_A Arginine/agmatine antip 40.1 35 0.0012 34.4 5.8 14 112-125 300-313 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 32.7 19 0.00063 31.6 2.0 22 492-515 30-51 (124)
5 3luu_A Uncharacterized protein 27.6 20 0.00069 30.0 1.2 18 491-508 34-51 (101)
6 2l6n_A Uncharacterized protein 26.4 28 0.00096 30.9 2.0 15 492-506 37-51 (132)
7 2rdd_B UPF0092 membrane protei 26.0 99 0.0034 21.3 4.4 19 223-241 1-19 (37)
8 2zqe_A MUTS2 protein; alpha/be 16.6 2.4E+02 0.0083 22.5 5.6 43 448-498 15-58 (83)
9 3rko_A NADH-quinone oxidoreduc 14.8 2.6E+02 0.0087 25.2 5.7 44 202-245 72-122 (147)
10 2o7g_A Probable RNA polymerase 14.8 57 0.0019 26.5 1.3 28 480-507 75-102 (112)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=78.99 E-value=3.9 Score=42.47 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=21.0
Q ss_pred cceeeecceeeeecchhhhhhccCCCC--ccceeeeh
Q 009924 11 GGWMSLGGILLCITGSEAMFADLGHFS--QLSIKIAF 45 (522)
Q Consensus 11 ~g~~~LG~V~L~iTG~EAlyADlGHFg--~~~I~~aw 45 (522)
.+|..+..++.+.+|-|+.-.=-+-.- +|++..|=
T Consensus 202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai 238 (511)
T 4djk_A 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAM 238 (511)
T ss_dssp TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHH
Confidence 345566778889999998644333332 34554443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=65.72 E-value=4.6 Score=41.06 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=9.7
Q ss_pred cceeeeecchhhhh
Q 009924 17 GGILLCITGSEAMF 30 (522)
Q Consensus 17 G~V~L~iTG~EAly 30 (522)
...+.+.+|-|+.-
T Consensus 195 ~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 195 AIFFLSYMGFGVIT 208 (444)
T ss_dssp HHGGGGGTHHHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 33467889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=40.07 E-value=35 Score=34.36 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=9.3
Q ss_pred HHHHHHHcCCCCce
Q 009924 112 IIKQCSALGCFPRV 125 (522)
Q Consensus 112 ii~Qai~Lg~fPr~ 125 (522)
+....-+-|.+|+.
T Consensus 300 ~~~~~a~dg~lP~~ 313 (445)
T 3l1l_A 300 TAKAAADDGLFPPI 313 (445)
T ss_dssp HHHHHHHTTSSCGG
T ss_pred HHHHHHhCCCCcHH
Confidence 33455677899964
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=32.69 E-value=19 Score=31.63 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=15.5
Q ss_pred HHHHhhccCCCCcccccCCCCeee
Q 009924 492 YEFLRRNTRVPSYALSVPHASTLE 515 (522)
Q Consensus 492 Y~FLRkNcR~~~~~L~IPh~~LlE 515 (522)
|.|||.||+++...-. .++++.
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 6899999999765443 555543
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=27.55 E-value=20 Score=29.95 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=10.4
Q ss_pred HHHHHhhccCCCCccccc
Q 009924 491 GYEFLRRNTRVPSYALSV 508 (522)
Q Consensus 491 ~Y~FLRkNcR~~~~~L~I 508 (522)
=|.|||.||+.+...-.-
T Consensus 34 ~~~wLRd~c~ca~c~~~~ 51 (101)
T 3luu_A 34 TFEHLRVECPCAECKGHT 51 (101)
T ss_dssp EHHHHHHTCCCC------
T ss_pred CHHHHHhhCCChhhcCcc
Confidence 379999999977654433
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=26.44 E-value=28 Score=30.88 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=12.1
Q ss_pred HHHHhhccCCCCccc
Q 009924 492 YEFLRRNTRVPSYAL 506 (522)
Q Consensus 492 Y~FLRkNcR~~~~~L 506 (522)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 699999999876543
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=26.01 E-value=99 Score=21.34 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=10.9
Q ss_pred CccHHHHHHHHHHHHHHHh
Q 009924 223 GAWVPIALAFIFLIVMCVW 241 (522)
Q Consensus 223 GGw~pl~ia~~~~~iM~~W 241 (522)
|||..++.-++++.+||..
T Consensus 1 ~~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4566665555566666544
No 8
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=16.61 E-value=2.4e+02 Score=22.53 Aligned_cols=43 Identities=37% Similarity=0.506 Sum_probs=31.1
Q ss_pred hhHHHHH-HHHHHHHHcCcEEEeeeeEEEecCCCChhHHHHHHHHHHHHhhc
Q 009924 448 REAMKEL-QELMEAREAGIAYILGHSYVKAKQGSSALKKLVINYGYEFLRRN 498 (522)
Q Consensus 448 ~~v~eEl-~~L~~A~e~GVvYIlG~~~vkar~~Ss~lKK~vIn~~Y~FLRkN 498 (522)
+++.+++ ++|++|..+|.-. -.|.=.++++.+|+.+- .||+++
T Consensus 15 ~eA~~~l~~fl~~a~~~g~~~----v~IIHGkG~GvLr~~V~----~~L~~~ 58 (83)
T 2zqe_A 15 AEALLEVDQALEEARALGLST----LRLLHGKGTGALRQAIR----EALRRD 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCSE----EEEECCSTTSHHHHHHH----HHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCE----EEEEECCCchHHHHHHH----HHHhcC
Confidence 4566666 6799999988643 34555667899998776 578875
No 9
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=14.80 E-value=2.6e+02 Score=25.21 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=25.7
Q ss_pred HHHHHH--HHHHHHHHhhhcccCCccHHHHH-----HHHHHHHHHHhhhhH
Q 009924 202 VFFFGT--IEALYFSASLIKFLEGAWVPIAL-----AFIFLIVMCVWHYGT 245 (522)
Q Consensus 202 ~~~F~~--ie~~f~sa~l~K~~~GGw~pl~i-----a~~~~~iM~~W~~G~ 245 (522)
.++|+. +|.+|+---...+.+-||..+.. ..+++...|-|+.|.
T Consensus 72 AilFlIFDvEi~~L~Pwa~~~~~~~~~~~~~~~~Fl~iL~~Gl~yEW~~Ga 122 (147)
T 3rko_A 72 AMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGA 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444 66777765555666667754433 333344567898883
No 10
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=14.79 E-value=57 Score=26.50 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=15.7
Q ss_pred CChhHHHHHHHHHHHHhhccCCCCcccc
Q 009924 480 SSALKKLVINYGYEFLRRNTRVPSYALS 507 (522)
Q Consensus 480 Ss~lKK~vIn~~Y~FLRkNcR~~~~~L~ 507 (522)
.+|+.+++.|.+.+++|++.|.+.....
T Consensus 75 ~~wl~~i~~n~~~d~~R~~~~~~~~~~~ 102 (112)
T 2o7g_A 75 RTWLLAIARHVVADHIRHVRSRPRTTRG 102 (112)
T ss_dssp HHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 4689999999999999999887655443
Done!