Query 009924
Match_columns 522
No_of_seqs 198 out of 822
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 16:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009924.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009924hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 28.0 17 0.0013 21.9 2.2 20 224-243 5-24 (27)
2 d1or7a2 a.177.1.1 (A:-1-111) S 14.9 39 0.0028 25.9 2.4 24 480-503 73-96 (113)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 13.5 22 0.0016 25.5 0.4 41 50-95 14-54 (57)
4 d1iray2 b.1.1.4 (Y:102-204) Ty 10.8 53 0.0039 25.0 2.0 26 322-347 57-82 (103)
5 d1f2qa2 b.1.1.4 (A:86-174) IgE 9.5 86 0.0062 22.7 2.7 30 320-349 46-75 (89)
6 d1cs6a3 b.1.1.4 (A:209-299) Ax 9.3 96 0.007 22.2 2.9 30 318-347 50-79 (91)
7 d1jb0i_ f.23.17.1 (I:) Subunit 9.0 12 0.00084 24.8 -2.3 19 138-156 13-31 (38)
8 d2a65a1 f.54.1.1 (A:5-513) Na( 7.8 1.8E+02 0.013 27.9 5.2 26 226-251 406-431 (509)
9 d2yvxa3 f.57.1.1 (A:276-448) M 7.5 22 0.0016 30.8 -1.9 116 51-182 12-129 (173)
10 d1ug8a_ d.68.7.1 (A:) Poly(A)- 7.5 99 0.0072 23.8 2.2 21 352-372 8-28 (87)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.00 E-value=17 Score=21.93 Aligned_cols=20 Identities=35% Similarity=0.876 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHHHHHHHhhh
Q 009924 224 AWVPIALAFIFLIVMCVWHY 243 (522)
Q Consensus 224 Gw~pl~ia~~~~~iM~~W~~ 243 (522)
||+.++.-+.-..-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888888888888888853
No 2
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=14.88 E-value=39 Score=25.88 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHHhhccCCCC
Q 009924 480 SSALKKLVINYGYEFLRRNTRVPS 503 (522)
Q Consensus 480 Ss~lKK~vIn~~Y~FLRkNcR~~~ 503 (522)
.+|+.+++-|.+..++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998654
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.54 E-value=22 Score=25.49 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=27.3
Q ss_pred hhHHHHhcccchhhhccCcCcccccccceeeeccccchhhHHHHHH
Q 009924 50 YPSLILAYMGQAAYLSQHHVLDNDYRIGFYVSVPEKLRWPVLVIAI 95 (522)
Q Consensus 50 ~P~Lll~Y~GQaA~l~~~~~~p~~~~npFy~~~P~~~~~P~~vlAt 95 (522)
+-++++--++=+.|+.++. ..|.-|.++|+.+.|-.+-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~-----~~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERG-----APGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----STTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcC-----CCCccccccchhhhhheeeeec
Confidence 3344444566677888872 2344599999999997765544
No 4
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.83 E-value=53 Score=25.05 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCccEEEEEEEEeee
Q 009924 322 EERFLVGHIGPRQYRIYRCIVRYGYR 347 (522)
Q Consensus 322 ~eR~~v~~~~~~~~~~~r~~~ryGy~ 347 (522)
+..+.|..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 44567888888888999999988664
No 5
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.47 E-value=86 Score=22.72 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=23.9
Q ss_pred CCCccEEEEEecCCCccEEEEEEEEeeeec
Q 009924 320 RPEERFLVGHIGPRQYRIYRCIVRYGYRDV 349 (522)
Q Consensus 320 ~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~ 349 (522)
.....+.+..+...+-|.|+|.++.|+.+.
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 345668888888888899999999887654
No 6
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.26 E-value=96 Score=22.24 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=22.4
Q ss_pred ccCCCccEEEEEecCCCccEEEEEEEEeee
Q 009924 318 HVRPEERFLVGHIGPRQYRIYRCIVRYGYR 347 (522)
Q Consensus 318 ~V~~~eR~~v~~~~~~~~~~~r~~~ryGy~ 347 (522)
++..+..+.+..+...+.|.|+|++.=.+-
T Consensus 50 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 79 (91)
T d1cs6a3 50 WLSSEPLLHIQNVDFEDEGTYECEAENIKG 79 (91)
T ss_dssp CSBSSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred eeeeeeEEEeCCCCccCCEEEEEEEEECCC
Confidence 334455688888988888999999985443
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=8.99 E-value=12 Score=24.81 Aligned_cols=19 Identities=21% Similarity=0.763 Sum_probs=14.5
Q ss_pred eechhhHHHHHHHhheeeE
Q 009924 138 IYIPEINWILMILCLAVTI 156 (522)
Q Consensus 138 IYIP~vNw~Lmv~~~~vv~ 156 (522)
|.||.+-|++-+.++.+..
T Consensus 13 I~iPvv~wl~p~vvMglLF 31 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 7899999998876665443
No 8
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=7.80 E-value=1.8e+02 Score=27.92 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009924 226 VPIALAFIFLIVMCVWHYGTLKKYEF 251 (522)
Q Consensus 226 ~pl~ia~~~~~iM~~W~~G~~~~~~~ 251 (522)
+.+.+.+++.++...|.||.++..+.
T Consensus 406 ~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 406 IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 46666788889999999999877653
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=7.47 E-value=22 Score=30.82 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=63.2
Q ss_pred hHHHHhcccc--hhhhccCcCcccccccceeeeccccchhhHHHHHHHHHHHhhhheeechhhHHHHHHHcCCCCceeEE
Q 009924 51 PSLILAYMGQ--AAYLSQHHVLDNDYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIV 128 (522)
Q Consensus 51 P~Lll~Y~GQ--aA~l~~~~~~p~~~~npFy~~~P~~~~~P~~vlAtlAaIIASQA~Isg~FSii~Qai~Lg~fPr~ki~ 128 (522)
|-|+++.+|+ +|+++++ -|+.-+-+-. =.++.|+ ++-.+.-++||+. +++-+++++|-.-+-.
T Consensus 12 pWL~i~l~~~~~~a~ii~~---Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~-- 76 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQG---FESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD-- 76 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS--
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh--
Confidence 3355555554 5666665 2433332211 2356665 6777888899986 5889999999643211
Q ss_pred ecCCCcCCceechhhHHHHHHHhheeeEeeCCcchhhhcccceeEeehhHHHHH
Q 009924 129 HTSSKIHGQIYIPEINWILMILCLAVTIGFRDTKRMGNASGLAVITVMLVTTCL 182 (522)
Q Consensus 129 hTS~~~~GQIYIP~vNw~Lmv~~~~vv~~F~~s~~l~~AYGiaV~~~M~iTT~L 182 (522)
.-+...-++.+-.+|=+.+-..+.+...+.....++-+=|++...+|++.+++
T Consensus 77 -~~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~ 129 (173)
T d2yvxa3 77 -WRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 129 (173)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 11123345667777766555554444444554445444444444444444443
No 10
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.47 E-value=99 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHHHHhcCC
Q 009924 352 DDMEFEKDLVCSIAEFIRSGS 372 (522)
Q Consensus 352 ~~~~f~~~l~~~L~~FI~~e~ 372 (522)
+..+|.+++++.|.+|+.++.
T Consensus 8 d~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 8 DQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHHcCcc
Confidence 456899999999999999764
Done!