BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009925
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 128/232 (55%), Gaps = 13/232 (5%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
+ LT++ E + A + ++S + + IT +Q L+ WLNDEVIN Y+ LL
Sbjct: 2 LLELTEDMEKEISNALGHGPQDEILS-SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLL 60
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
ER K+ Q + H F+TFFY KL G ++AVKRWT G L E + I VPI
Sbjct: 61 VERNKK--QGYPALHVFSTFFYPKLKSGG----YQAVKRWTK----GVNLFEQEIILVPI 110
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEF 468
H+++HW L VID + K +YLDS+ + ++ L +Y +E + K D+++ +W
Sbjct: 111 HRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHS 170
Query: 469 V--LDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILR 518
+ ++P+Q NG DCGMF KY D+ SR + F Q MP FR + EIL
Sbjct: 171 MKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILH 222
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 127/232 (54%), Gaps = 13/232 (5%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
+ LT++ E + A + ++S + + IT +Q L+ WLNDEVIN Y+ LL
Sbjct: 8 LLELTEDMEKEISNALGHGPQDEILS-SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLL 66
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
ER K+ Q + H F+TFFY KL G ++AVKRWT G L E + I VPI
Sbjct: 67 VERNKK--QGYPALHVFSTFFYPKLKSGG----YQAVKRWTK----GVNLFEQEIILVPI 116
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEF 468
H+++HW L VID + K +YLDS+ + ++ L +Y +E + K D+++ +W
Sbjct: 117 HRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHS 176
Query: 469 V--LDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILR 518
+ ++P+Q NG D GMF KY D+ SR + F Q MP FR + EIL
Sbjct: 177 MKPHEIPQQLNGSDSGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILH 228
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 126/233 (54%), Gaps = 15/233 (6%)
Query: 289 FIPLTKEEEAAVERAF-SANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGL 347
F +T+E E ++ F + N VL + IT K +Q L WLNDE+IN Y+ +
Sbjct: 14 FPEITEEMEKEIKNVFRNGNQDEVLSEAFR--LTITRKDIQTLNHLNWLNDEIINFYMNM 71
Query: 348 LKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVP 407
L ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VP
Sbjct: 72 LMERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVP 121
Query: 408 IHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWE-- 465
IH +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D + W+
Sbjct: 122 IHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLF 181
Query: 466 QEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILR 518
+ ++P+Q NG DCGMF KY D ++ + F Q HMPYFR R EIL
Sbjct: 182 SKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILH 234
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 126/231 (54%), Gaps = 13/231 (5%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
F +T+E E ++ F + ++S + IT K +Q L WLNDE+IN Y+ +L
Sbjct: 6 FPEITEEMEKEIKNVFRNGNQDEVLSEA-FRLTITRKDIQTLNHLNWLNDEIINFYMNML 64
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VPI
Sbjct: 65 MERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVPI 114
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWE--Q 466
H +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D + W+
Sbjct: 115 HLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFS 174
Query: 467 EFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEIL 517
+ ++P+Q NG DCGMF KY D ++ + F Q HMPYFR R EIL
Sbjct: 175 KKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 225
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 126/231 (54%), Gaps = 13/231 (5%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
F +T+E E ++ F + ++S + IT K +Q L WLNDE+IN Y+ +L
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEA-FRLTITRKDIQTLNHLNWLNDEIINFYMNML 60
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VPI
Sbjct: 61 MERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVPI 110
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWE--Q 466
H +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D + W+
Sbjct: 111 HLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFS 170
Query: 467 EFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEIL 517
+ ++P+Q NG DCGMF KY D ++ + F Q HMPYFR R EIL
Sbjct: 171 KKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 221
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 125/231 (54%), Gaps = 14/231 (6%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
F +T+E E ++ F + ++S + IT K +Q L WLNDE+IN Y+ +L
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEA-FRLTITRKDIQTLNHLNWLNDEIINFYMNML 60
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VPI
Sbjct: 61 MERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVPI 110
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEF 468
H +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D + W Q F
Sbjct: 111 HLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGW-QLF 169
Query: 469 V--LDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEIL 517
+P+Q NG DCGMF KY D ++ + F Q HMPYFR R EIL
Sbjct: 170 SKKSQIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 220
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 125/231 (54%), Gaps = 13/231 (5%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
F +T+E E ++ F + ++S + IT K +Q L WLNDE+IN Y+ +L
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEA-FRLTITRKDIQTLNHLNWLNDEIINFYMNML 60
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VPI
Sbjct: 61 MERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVPI 110
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWE--Q 466
H +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D + W+
Sbjct: 111 HLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFS 170
Query: 467 EFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEIL 517
+ ++P+Q NG D GMF KY D ++ + F Q HMPYFR R EIL
Sbjct: 171 KKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 221
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 112/200 (56%), Gaps = 12/200 (6%)
Query: 320 IDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKG 379
+ IT K +Q L WLNDE+IN Y+ +L ER K + H FNTFF+ KL K
Sbjct: 11 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKG--LPSVHAFNTFFFTKL----KT 64
Query: 380 YDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKV 439
++AVKRWT KK+ + D + VPIH +HWCLAV+D + K Y DS+ G + +
Sbjct: 65 AGYQAVKRWT--KKVD--VFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA 120
Query: 440 LGDLARYFVEEVRDKCGKDIDVSDWE--QEFVLDLPEQANGFDCGMFMLKYVDFYSRGLG 497
L +Y +E DK K+ D + W+ + ++P+Q NG D GMF KY D ++
Sbjct: 121 CRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDSGMFACKYADCITKDRP 180
Query: 498 LCFDQSHMPYFRVRTAKEIL 517
+ F Q HMPYFR R EIL
Sbjct: 181 INFTQQHMPYFRKRMVWEIL 200
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 292 LTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKER 351
L ++++ V++A ++ L++ I+IT + + L P WLND +I ++ K
Sbjct: 7 LNEKDDDQVQKALASRENTQLMN--RDNIEITVRDFKTLAPRRWLNDTIIEFFM---KYI 61
Query: 352 EKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIH-K 410
EK P FN+FFY L+ +GY + V+RW KK + + DKIF PI+
Sbjct: 62 EKSTPNTVA----FNSFFYTNLS--ERGY--QGVRRWMKRKKTQ--IDKLDKIFTPINLN 111
Query: 411 QIHWCLAVIDRKDKKFQYLDSLK----GRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQ 466
Q HW L +ID K K Y+DSL +L DL +Y +EE + G+D D+
Sbjct: 112 QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDL----- 166
Query: 467 EFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEIL 517
LD P+Q NG+DCG+++ + S L FD R A IL
Sbjct: 167 -IHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLIL 216
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 26/231 (11%)
Query: 292 LTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKER 351
L ++++ V++A ++ L++ I+IT + + L P WLND +I ++ K
Sbjct: 7 LNEKDDDQVQKALASRENTQLMN--RDNIEITVRDFKTLAPRRWLNDTIIEFFM---KYI 61
Query: 352 EKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIH-K 410
EK P FN+FFY L+ +GY + V+RW KK + + DKIF PI+
Sbjct: 62 EKSTPNTVA----FNSFFYTNLS--ERGY--QGVRRWMKRKKTQ--IDKLDKIFTPINLN 111
Query: 411 QIHWCLAVIDRKDKKFQYLDSLK----GRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQ 466
Q HW L +ID K K Y+DSL +L DL +Y +EE + G+D D+
Sbjct: 112 QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDL----- 166
Query: 467 EFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEIL 517
LD P+Q NG+D G+++ + S L FD R A IL
Sbjct: 167 -IHLDCPQQPNGYDXGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLIL 216
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 316 TETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFY----- 370
T+ G+ +T + L+CL G +LND +I+ YL L EK + + H F++FFY
Sbjct: 29 TKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLI-LEKASDELVERSHIFSSFFYKCLTR 87
Query: 371 --NKLACGNKGYDF-----RAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVI 419
N L N + V+ WT + D IFVP+++ HW LAVI
Sbjct: 88 KENNLTEDNPNLSMAQRRHKRVRTWTR----HINIFNKDYIFVPVNESSHWYLAVI 139
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 472 LPEQANGFDCGMFMLKYVDFYSRGLGLCFD-----QSHMPYFRVRTAKEILR 518
+P+Q N DCG+++L+YV+ + + + F+ + P ++T +E +R
Sbjct: 256 VPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIR 307
>pdb|2OIV|A Chain A, Structural Analysis Of Xanthomonas Xopd Provides Insights
Into Substrate Specificity Of Ubiquitin-Like Protein
Proteases
Length = 186
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 29/176 (16%)
Query: 334 AWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKK 393
+WL D + Y L R + EP L HF ++ L+ + RA ++
Sbjct: 3 SWLLDGHLRAYTDDLARRLRGEPNAHL-LHFADSQVVTMLSSADPDQQARA-------QR 54
Query: 394 LGYGLIECDKIFVPIHK-QIHWCLAVIDRKDK----KFQYLDSLKGRD--KKVLGDLARY 446
L G +F+PI++ HW L V+DR++K + Y DS+ +D ++ L D+A Y
Sbjct: 55 LLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHY-DSMAQKDPQQRYLADMAAY 113
Query: 447 FVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYS-RGLGLCFD 501
+ D++Q + + Q++G+ CG +L ++ + R L FD
Sbjct: 114 HLG------------LDYQQTHEMPIAIQSDGYSCGDHVLTGIEVLAHRVLDGTFD 157
>pdb|2OIX|A Chain A, Xanthomonas Xopd C470a Mutant
Length = 186
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 29/176 (16%)
Query: 334 AWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKK 393
+WL D + Y L R + EP L HF ++ L+ + RA ++
Sbjct: 3 SWLLDGHLRAYTDDLARRLRGEPNAHL-LHFADSQVVTMLSSADPDQQARA-------QR 54
Query: 394 LGYGLIECDKIFVPIHK-QIHWCLAVIDRKDK----KFQYLDSLKGRD--KKVLGDLARY 446
L G +F+PI++ HW L V+DR++K + Y DS+ +D ++ L D+A Y
Sbjct: 55 LLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHY-DSMAQKDPQQRYLADMAAY 113
Query: 447 FVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYS-RGLGLCFD 501
+ D++Q + + Q++G+ G +L ++ + R L FD
Sbjct: 114 HLG------------LDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFD 157
>pdb|2X0O|A Chain A, Apo Structure Of The Alcaligin Biosynthesis Protein C
(Alcc) From Bordetella Bronchiseptica
pdb|2X0P|A Chain A, Co-Complex Structure Of Alcaligin Biosynthetase Protein C
(Alcc) With Adenosine From Bordetella Bronchiseptica
pdb|2X0Q|A Chain A, Co-Complex Structure Of Alcaligin Biosynthesis Protein C
(Alcc) With Atp From Bordetella Bronchiseptica
Length = 618
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 472 LPE--QANGFDCGMFMLKYVDFYSRGLGLCF---DQSHMPY 507
LPE QA+G D G ++ +YVD Y L CF D MP+
Sbjct: 409 LPELIQASGLDAGTWLERYVDAYLTPLIHCFYAHDLVFMPH 449
>pdb|3GKU|A Chain A, Crystal Structure Of A Probable Rna-binding Protein From
Clostridium Symbiosum Atcc 14940
pdb|3GKU|B Chain B, Crystal Structure Of A Probable Rna-binding Protein From
Clostridium Symbiosum Atcc 14940
pdb|3GKU|C Chain C, Crystal Structure Of A Probable Rna-binding Protein From
Clostridium Symbiosum Atcc 14940
Length = 225
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 432 LKGRDKKVLGDLARYFVEEVRDKCGKDIDVS----DWEQEFVLDLPEQANGFDCGMFMLK 487
++ + K+ L D A F+E+V D +D+S + E+E ++L G D G+ + K
Sbjct: 54 IRAKRKETLQDKAIEFLEQVFDAXNXAVDISVEYNETEKEXNVNL----KGDDXGILIGK 109
Query: 488 ---YVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 520
+D + L ++S Y RV+ E R R
Sbjct: 110 RGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYRER 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,672,422
Number of Sequences: 62578
Number of extensions: 679522
Number of successful extensions: 1617
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 21
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)