Query 009925
Match_columns 522
No_of_seqs 272 out of 1239
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 1.1E-50 3.8E-55 395.9 23.2 220 289-520 2-224 (226)
2 2xph_A Sentrin-specific protea 100.0 1.5E-50 5.2E-55 398.0 23.7 222 287-520 12-236 (238)
3 1euv_A ULP1 protease; SUMO hyd 100.0 1.2E-46 4.3E-51 366.4 19.7 212 288-520 3-219 (221)
4 3eay_A Sentrin-specific protea 100.0 2.4E-41 8.1E-46 346.5 18.8 209 307-521 17-315 (323)
5 2bkr_A Sentrin-specific protea 100.0 2.8E-39 9.4E-44 312.1 16.5 191 310-521 3-211 (212)
6 2oix_A Xanthomonas outer prote 100.0 2.2E-32 7.4E-37 260.2 15.1 169 332-519 1-181 (186)
7 4ekf_A Adenain; alpha and beta 96.4 0.026 8.8E-07 53.6 11.1 84 411-495 52-136 (204)
8 2cxa_A Leucyl/phenylalanyl-tRN 8.5 1.6E+02 0.0053 29.1 2.2 20 331-350 124-143 (256)
9 2l2l_A Transcriptional repress 8.2 2.1E+02 0.0073 20.6 2.2 31 243-273 3-33 (43)
10 3k8u_A Putative ABC transporte 7.1 2.5E+02 0.0084 24.3 2.7 21 473-493 9-29 (156)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=1.1e-50 Score=395.92 Aligned_cols=220 Identities=39% Similarity=0.713 Sum_probs=203.3
Q ss_pred CCCCCHHHHHHHHHHHcc-CCCceeeecCCCCeEeccccccccCCCCccCHHHHHHHHHHHHHHhhhCCccccceeeeeh
Q 009925 289 FIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT 367 (522)
Q Consensus 289 f~pLs~e~~~~V~~al~~-~~~~vLvs~~~~nI~It~~DL~~L~~~~WLNDeVINfYl~lL~e~~~~~p~~~~k~~~FnS 367 (522)
|+|||+|++++|..+|.. ++++++++. +++.||.+|+.+|.+++||||+|||||+.+|.++.... ..+++|+|+|
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f~s 77 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILSSA--FKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVFST 77 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEEEE--TTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEECCT
T ss_pred CCCCCHHHHHHHHHHhccCCccceeecc--CCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEEeH
Confidence 679999999999999986 788999875 79999999999999999999999999999998876432 3478999999
Q ss_pred hhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeecCcceEEEEEecCCCcceecccCCCCCHHHHHHHHHHH
Q 009925 368 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYF 447 (522)
Q Consensus 368 fFy~kL~~~~~~~~y~~VkRWtk~kkigidLf~kD~IfIPIn~~sHW~L~VId~k~k~I~~yDSL~~~~~~vl~~L~~yL 447 (522)
|||++|... +|+.|++|++. .++|++++||||||.++||+|+|||+++++|+|||||++.+..+...|..||
T Consensus 78 ~f~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~l 149 (226)
T 1th0_A 78 FFYPKLKSG----GYQAVKRWTKG----VNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYL 149 (226)
T ss_dssp THHHHHHHH----TGGGTGGGGTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhhhc----ccHHHHHHhhc----CCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHHH
Confidence 999999876 78999999973 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCceeec--cCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHHhc
Q 009925 448 VEEVRDKCGKDIDVSDWEQEF--VLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 520 (522)
Q Consensus 448 ~~E~k~K~g~~~d~s~W~~~~--v~~vPqQ~Ng~DCGVFVL~fae~ls~g~~l~FtQ~dMp~fRkrma~EIl~lr 520 (522)
..++..+.+.+++.+.|+... ..++|||.||+|||||||+||++++++.++.|+|++|++||++|+.+|++.+
T Consensus 150 ~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~ 224 (226)
T 1th0_A 150 QDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQ 224 (226)
T ss_dssp HHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCC
Confidence 999999988888889998753 4699999999999999999999999999999999999999999999999876
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=1.5e-50 Score=398.02 Aligned_cols=222 Identities=40% Similarity=0.697 Sum_probs=204.4
Q ss_pred CCCCCCCHHHHHHHHHHHcc-CCCceeeecCCCCeEeccccccccCCCCccCHHHHHHHHHHHHHHhhhCCccccceeee
Q 009925 287 EPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFF 365 (522)
Q Consensus 287 e~f~pLs~e~~~~V~~al~~-~~~~vLvs~~~~nI~It~~DL~~L~~~~WLNDeVINfYl~lL~e~~~~~p~~~~k~~~F 365 (522)
+.|+|||+|++++|++++.+ ++++|++. .+++.|+.+|+.+|.+++||||+|||||+.+|.++.... ..+++|+|
T Consensus 12 ~~~~~lt~e~~~~v~~~l~~~~~~~vl~~--~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f 87 (238)
T 2xph_A 12 DEFPEITEEMEKEIKNVFRNGNQDEVLSE--AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSVHAF 87 (238)
T ss_dssp CCCCCCCHHHHHHHHHHSSSSCTTCCCEE--ETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCEEEC
T ss_pred cCCCCCCHHHHHHHHHHHcCCChhheeec--CCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCceeee
Confidence 56899999999999999987 67788875 479999999999999999999999999999998876432 35789999
Q ss_pred ehhhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeecCcceEEEEEecCCCcceecccCCCCCHHHHHHHHH
Q 009925 366 NTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLAR 445 (522)
Q Consensus 366 nSfFy~kL~~~~~~~~y~~VkRWtk~kkigidLf~kD~IfIPIn~~sHW~L~VId~k~k~I~~yDSL~~~~~~vl~~L~~ 445 (522)
+||||++|... +|+.|++|+++ .++|++|+||||||.++||+|+|||+++++|+|||||++.+......|..
T Consensus 88 ~sff~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~~ 159 (238)
T 2xph_A 88 NTFFFTKLKTA----GYQAVKRWTKK----VDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQ 159 (238)
T ss_dssp CTTTTHHHHTT----CHHHHTTTTTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHH
T ss_pred ecHHHHHhhhc----ccHHHHHHhcc----CCcccCCEEEEcccCCCceEEEEEEcccceEEEeecccCCCHHHHHHHHH
Confidence 99999999876 79999999973 58999999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHhhcCCCCCCCCceee--ccCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHHhc
Q 009925 446 YFVEEVRDKCGKDIDVSDWEQE--FVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 520 (522)
Q Consensus 446 yL~~E~k~K~g~~~d~s~W~~~--~v~~vPqQ~Ng~DCGVFVL~fae~ls~g~~l~FtQ~dMp~fRkrma~EIl~lr 520 (522)
||..++..+.+..++.+.|+.. ...++|||.||+|||||||+||++++++.++.|+|++|++||++|+.+|++.|
T Consensus 160 ~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~ 236 (238)
T 2xph_A 160 YLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 236 (238)
T ss_dssp HHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCC
Confidence 9999999998888999999875 35789999999999999999999999999999999999999999999999876
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=1.2e-46 Score=366.40 Aligned_cols=212 Identities=32% Similarity=0.572 Sum_probs=188.0
Q ss_pred CCCCCCHHHHHHHHHHHccCCCceeeecCCCCeEeccccccccCCCCccCHHHHHHHHHHHHHHhhhCCccccceeeeeh
Q 009925 288 PFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT 367 (522)
Q Consensus 288 ~f~pLs~e~~~~V~~al~~~~~~vLvs~~~~nI~It~~DL~~L~~~~WLNDeVINfYl~lL~e~~~~~p~~~~k~~~FnS 367 (522)
.+.|||+|++.+|+++|..+++++++. .+++.||.+|+.+|.+++||||+|||||+.+|.+. .+++++|+|
T Consensus 3 ~~~~l~~~~~~~v~~~l~~~~~~~l~~--~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~-------~~~~~~f~s 73 (221)
T 1euv_A 3 LVPELNEKDDDQVQKALASRENTQLMN--RDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS-------TPNTVAFNS 73 (221)
T ss_dssp SSCCCCHHHHHHHHHHHTCSSCCEEEE--ETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHH-------STTEEECCT
T ss_pred cCCCCCHHHHHHHHHHhcCCCCeeeec--CCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhc-------CCCeEEEEc
Confidence 467899999999999999988889986 47899999999999999999999999999999764 257999999
Q ss_pred hhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeec-CcceEEEEEecCCCcceecccCCCC-CH---HHHHH
Q 009925 368 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHK-QIHWCLAVIDRKDKKFQYLDSLKGR-DK---KVLGD 442 (522)
Q Consensus 368 fFy~kL~~~~~~~~y~~VkRWtk~kkigidLf~kD~IfIPIn~-~sHW~L~VId~k~k~I~~yDSL~~~-~~---~vl~~ 442 (522)
|||++|... +|..|++|++.++ +++|++++||||||. ++||+|+||++++++|+|||||++. +. .++..
T Consensus 74 ~f~~~l~~~----~~~~v~rw~~~~~--~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~ 147 (221)
T 1euv_A 74 FFYTNLSER----GYQGVRRWMKRKK--TQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTD 147 (221)
T ss_dssp HHHHHHHHH----TGGGTTTTTGGGT--SCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHH
T ss_pred HHHHHhhhh----ccHHHHHHHHhcc--CCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHH
Confidence 999999876 7999999998543 579999999999998 5999999999999999999999864 43 46778
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceeeccCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHHhc
Q 009925 443 LARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 520 (522)
Q Consensus 443 L~~yL~~E~k~K~g~~~d~s~W~~~~v~~vPqQ~Ng~DCGVFVL~fae~ls~g~~l~FtQ~dMp~fRkrma~EIl~lr 520 (522)
|++|+..+++.+.+. .|... ..++|||.||+|||||||+||++++++.++.|+|++|+.+|++|+.+|++.+
T Consensus 148 l~~~l~~e~~~~~~~-----~~~~~-~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~~~ 219 (221)
T 1euv_A 148 LQKYVMEESKHTIGE-----DFDLI-HLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDA 219 (221)
T ss_dssp HHHHHHHHTTSSSCT-----TCEEE-EECCCCCSSSSTHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCC-----CceEe-ecCCCCCCCCcCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhcc
Confidence 899998887766553 35443 3689999999999999999999999999999999999999999999999875
No 4
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=346.50 Aligned_cols=209 Identities=27% Similarity=0.467 Sum_probs=173.8
Q ss_pred CCCceeeec---CCCCeEeccccccccCCCCccCHHHHHHHHHHHHHHhhhCCccccceeeeehhhhhhhccCCC-----
Q 009925 307 NWRAVLVSH---TETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNK----- 378 (522)
Q Consensus 307 ~~~~vLvs~---~~~nI~It~~DL~~L~~~~WLNDeVINfYl~lL~e~~~~~p~~~~k~~~FnSfFy~kL~~~~~----- 378 (522)
+..++++.+ .++++.||++||.||.+++||||+|||||+.||..... .....+++|+||||||++|...+.
T Consensus 17 ~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~-~~~~~~r~h~FnSFFy~kL~~~~~~~~~~ 95 (323)
T 3eay_A 17 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSHIFSSFFYKCLTRKENNLTED 95 (323)
T ss_dssp CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTS-CHHHHHTEEECCTHHHHHHSCC-------
T ss_pred CcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhc-cccccCcEEEEchHHHHHHHhcccccccc
Confidence 556777754 46899999999999999999999999999999964321 112357899999999999987521
Q ss_pred -------CCchhHHHHhhhccccccCcccCCceeeeeecCcceEEEEEecCCC---------------------------
Q 009925 379 -------GYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDK--------------------------- 424 (522)
Q Consensus 379 -------~~~y~~VkRWtk~kkigidLf~kD~IfIPIn~~sHW~L~VId~k~k--------------------------- 424 (522)
..+|.+|+|||++ ++||++|+||||||.+.||+|+|||++..
T Consensus 96 ~~~~s~~~~~y~~VrrWtrk----vdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
T 3eay_A 96 NPNLSMAQRRHKRVRTWTRH----INIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKT 171 (323)
T ss_dssp -CCSCHHHHHHTTSGGGGTT----CCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC---------------------
T ss_pred cccchhHHHHHHHHHHHHhh----cccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccc
Confidence 1358999999973 68999999999999999999999998742
Q ss_pred -----------------------------------cceecccCCCCC-HHHHHHHHHHHHHHHHhhcC--CCCCCCCcee
Q 009925 425 -----------------------------------KFQYLDSLKGRD-KKVLGDLARYFVEEVRDKCG--KDIDVSDWEQ 466 (522)
Q Consensus 425 -----------------------------------~I~~yDSL~~~~-~~vl~~L~~yL~~E~k~K~g--~~~d~s~W~~ 466 (522)
+|.|||||++.. ..++..|+.||..|++.+.+ .+++.+.|..
T Consensus 172 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~ 251 (323)
T 3eay_A 172 IDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVD 251 (323)
T ss_dssp ----------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCCCTTTSCE
T ss_pred cccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCcCCCHhHcee
Confidence 599999999964 78999999999999998865 3455667765
Q ss_pred eccCCCCCCCCCCchHHHHHHHHHHHHcCCCCc----------cCCCChHHHHHHHHHHHHHhcc
Q 009925 467 EFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLC----------FDQSHMPYFRVRTAKEILRMRA 521 (522)
Q Consensus 467 ~~v~~vPqQ~Ng~DCGVFVL~fae~ls~g~~l~----------FtQ~dMp~fRkrma~EIl~lr~ 521 (522)
. ...+|||.||+|||||||+||++|+.+.+++ |++..|...|..|...|+.++.
T Consensus 252 ~-~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~L~~ 315 (323)
T 3eay_A 252 L-CPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKLHL 315 (323)
T ss_dssp E-CCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHHHHH
T ss_pred c-cCCCCCcCCCCcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 3679999999999999999999999987543 5667899999999999998763
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=2.8e-39 Score=312.12 Aligned_cols=191 Identities=17% Similarity=0.236 Sum_probs=159.7
Q ss_pred ceeeecCCCCeEeccccccccCCCCccCHHHHHHHHHHHHHHhhhCCccccceeeee---hhhhhhhccCCCCCchhHHH
Q 009925 310 AVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFN---TFFYNKLACGNKGYDFRAVK 386 (522)
Q Consensus 310 ~vLvs~~~~nI~It~~DL~~L~~~~WLNDeVINfYl~lL~e~~~~~p~~~~k~~~Fn---SfFy~kL~~~~~~~~y~~Vk 386 (522)
+++++. +++.|+.+|+.+|.+++||||+|||||+.+|.++.... ..+++++|+ ||||..+. +++.++
T Consensus 3 ~~~l~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~~~p~~s~f~~~~~------~~~~v~ 72 (212)
T 2bkr_A 3 PVVLSY--MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHD--SSDHVSFISPEVTQFIKCTS------NPAEIA 72 (212)
T ss_dssp CEEEEE--TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGG--GTTTEEEECHHHHHHHHHCC------CHHHHH
T ss_pred CEEEEE--CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccC--CCCcEEEEChHHHHHHHhCC------CHHHHH
Confidence 456654 58999999999999999999999999999999976433 246899999 99996542 478999
Q ss_pred HhhhccccccCcccCCceeeeeec-------CcceEEEEEecCCCcceecccCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 009925 387 RWTSAKKLGYGLIECDKIFVPIHK-------QIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDI 459 (522)
Q Consensus 387 RWtk~kkigidLf~kD~IfIPIn~-------~sHW~L~VId~k~k~I~~yDSL~~~~~~vl~~L~~yL~~E~k~K~g~~~ 459 (522)
+|++. .+++++++||||||. ++||+|+||++++++|+|||||++.+......+..+|...+.....
T Consensus 73 ~~~~~----~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~~--- 145 (212)
T 2bkr_A 73 MFLEP----LDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGD--- 145 (212)
T ss_dssp HHHGG----GTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTTC---
T ss_pred HHhcc----cccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHHHHHHHHHHHhCCccc---
Confidence 99973 589999999999994 8999999999999999999999999887777777777665543321
Q ss_pred CCCCceeeccCCCCCCCCCCchHHHHHHHHHHHHcCC--------CCccCCCChHHHHHHHHHHHHHhcc
Q 009925 460 DVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGL--------GLCFDQSHMPYFRVRTAKEILRMRA 521 (522)
Q Consensus 460 d~s~W~~~~v~~vPqQ~Ng~DCGVFVL~fae~ls~g~--------~l~FtQ~dMp~fRkrma~EIl~lr~ 521 (522)
.|... ..++|||.||+|||||||+||++++++. ...|++++|+.+|++|+..|++++.
T Consensus 146 ---~~~~~-~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~L~~ 211 (212)
T 2bkr_A 146 ---KLAFV-EEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIATLAK 211 (212)
T ss_dssp ---CCCEE-ECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ---cceEe-ECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 34333 4689999999999999999999998874 1358999999999999999999864
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.98 E-value=2.2e-32 Score=260.25 Aligned_cols=169 Identities=21% Similarity=0.297 Sum_probs=124.5
Q ss_pred CCCccCHHHHHHHHHHHHHHhhhCCccccceeeeehhhhhhhccCCCCCchhHHHHhhhccccccCccc-CCceeeeeec
Q 009925 332 PGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIE-CDKIFVPIHK 410 (522)
Q Consensus 332 ~~~WLNDeVINfYl~lL~e~~~~~p~~~~k~~~FnSfFy~kL~~~~~~~~y~~VkRWtk~kkigidLf~-kD~IfIPIn~ 410 (522)
+++||||+|||||+.+|.++....+. ..++++|+++++..+... ...++..+.+|++. ++ +++||||||.
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~-~~~v~f~~p~~~~~l~~~-~~~~~~~~~~~~~~-------~~~~~~i~iPin~ 71 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPN-AHLLHFADSQVVTMLSSA-DPDQQARAQRLLAG-------DDIPPIVFLPINQ 71 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTT-GGGEEECCHHHHHHTTCS-SHHHHHHHHHHHHS-------TTSCSEEEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccC-cceEEEECHHHHHHHHhC-CHHHHHHHHHHccc-------ccccCEEEEEEeC
Confidence 47999999999999999998754432 245999997665545433 11246688888762 34 9999999998
Q ss_pred -CcceEEEEEecCCCcc---eecccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeeccCCCCCCCCCCchHHHHH
Q 009925 411 -QIHWCLAVIDRKDKKF---QYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFML 486 (522)
Q Consensus 411 -~sHW~L~VId~k~k~I---~~yDSL~~~~~~vl~~L~~yL~~E~k~K~g~~~d~s~W~~~~v~~vPqQ~Ng~DCGVFVL 486 (522)
++||+|+||++++++| +|||||++.+.. ...+...|. ...+.+. .. ....++|||.||+|||||||
T Consensus 72 ~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~-~~~l~~~l~----~~l~~~~----~~-~~~~~~PqQ~Ng~DCGvfv~ 141 (186)
T 2oix_A 72 PNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ-QRYLADMAA----YHLGLDY----QQ-THEMPIAIQSDGYSAGDHVL 141 (186)
T ss_dssp TTTEEEEEEEECSSTTSCEEEEECCCSSCCHH-HHHHHHHHH----HHTTCCG----GG-CEEECBCCCC--CCHHHHHH
T ss_pred CCCccEEEEEECCCCeeeeeEEEcCCCCCCHH-HHHHHHHHH----HHhCCCc----cc-cccCCCCCCCCCCCHHHHHH
Confidence 8999999999999999 999999997754 333333333 2333221 11 12468999999999999999
Q ss_pred HHHHHHHcC----C---CCccCCCChHHHHHHHHHHHHHh
Q 009925 487 KYVDFYSRG----L---GLCFDQSHMPYFRVRTAKEILRM 519 (522)
Q Consensus 487 ~fae~ls~g----~---~l~FtQ~dMp~fRkrma~EIl~l 519 (522)
+||++++++ . ...|++++|..+|+.|...|.++
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 142 TGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp HHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 999999863 1 23588999999999999988764
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=96.35 E-value=0.026 Score=53.64 Aligned_cols=84 Identities=11% Similarity=0.187 Sum_probs=53.4
Q ss_pred CcceEEEEEecCCCcceecccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC-ceeeccCCCCCCCCCCchHHHHHHHH
Q 009925 411 QIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSD-WEQEFVLDLPEQANGFDCGMFMLKYV 489 (522)
Q Consensus 411 ~sHW~L~VId~k~k~I~~yDSL~~~~~~vl~~L~~yL~~E~k~K~g~~~d~s~-W~~~~v~~vPqQ~Ng~DCGVFVL~fa 489 (522)
|.||.-...|+..+++|.||++|-++.+..+ +-+|=.+-+.......-..+. .+.+...+.-|=+++--||+|.|.|.
T Consensus 52 GvHWiA~Aw~P~s~~~YmFDPfG~sd~~L~q-iY~F~Y~~llkRSAL~sspdRCv~LvkstqsVQcp~SaACGLFC~lFL 130 (204)
T 4ekf_A 52 GVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQ-VYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAAAGLFCCMFL 130 (204)
T ss_dssp CCCEEEEEEETTTTEEEEECTBTTCSHHHHH-HHHHHHHHHHHHHCC--------EEEECCSBCSCTTCCCHHHHHHHHH
T ss_pred ceeEEEeEecCCcceEEEeCCCCCCHHHHHH-HhhhhHHHHHHHHhhcCCCCceeEEEeccccccCcCchhHHHHHHHHH
Confidence 7899999999999999999999999876433 222211111111111000000 12222245556678889999999999
Q ss_pred HHHHcC
Q 009925 490 DFYSRG 495 (522)
Q Consensus 490 e~ls~g 495 (522)
.++..-
T Consensus 131 ~aF~~~ 136 (204)
T 4ekf_A 131 HAFANW 136 (204)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999764
No 8
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=8.51 E-value=1.6e+02 Score=29.12 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=16.2
Q ss_pred CCCCccCHHHHHHHHHHHHH
Q 009925 331 RPGAWLNDEVINVYLGLLKE 350 (522)
Q Consensus 331 ~~~~WLNDeVINfYl~lL~e 350 (522)
.++.|+++++|++|..+-..
T Consensus 124 ~~gTWI~~ei~~aY~~LH~~ 143 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRLHEL 143 (256)
T ss_dssp --CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 46899999999999998654
No 9
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=8.15 E-value=2.1e+02 Score=20.58 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=22.7
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhhhcCCC
Q 009925 243 VQKRGSKLKEIEFEIELNEKRWASLKQLWPL 273 (522)
Q Consensus 243 ~~~r~~~l~~~~~~~~~~e~r~~~~~~~rp~ 273 (522)
.+.|..-++.++.+++..|.+.-.++-+|..
T Consensus 3 ~~ere~~i~~LreeLR~EEaKLvLLKKlrqS 33 (43)
T 2l2l_A 3 PEERERMIKQLKEELRLEEAKLVLLKKLRQS 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888777766666543
No 10
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=7.10 E-value=2.5e+02 Score=24.27 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=16.3
Q ss_pred CCCCCCCchHHHHHHHHHHHH
Q 009925 473 PEQANGFDCGMFMLKYVDFYS 493 (522)
Q Consensus 473 PqQ~Ng~DCGVFVL~fae~ls 493 (522)
-.|.+..|||+-++.++-.+.
T Consensus 9 ~~Q~~~~dcglacLa~i~~~~ 29 (156)
T 3k8u_A 9 VPQIDTRDCGPAVLASVAKHY 29 (156)
T ss_dssp CCCSSTTCHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 357778999999998776553
Done!