BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009928
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EEA|A Chain A, The Crystal Structure Of The Gaf DomainHD DOMAIN PROTEIN
From Geobacter Sulfurreducens
pdb|3EEA|B Chain B, The Crystal Structure Of The Gaf DomainHD DOMAIN PROTEIN
From Geobacter Sulfurreducens
Length = 162
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 205 NLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYK 261
+ P + G+ F +M + + P L S L KR +ML D ++DLL P +
Sbjct: 45 DFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLMLTDPGSSDLLTPKLR 101
>pdb|3K17|A Chain A, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|B Chain B, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|C Chain C, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
pdb|3K17|D Chain D, Crystal Structure Of A Lin0012 Protein From Listeria
Innocua
Length = 365
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 226 AMVYNASPALISELEKRVGMMLEDANANDLLIPNYKN 262
A+V + A+++ + + + + LED+ N+L IP+Y+N
Sbjct: 22 AVVESGHTAILTAVNRYITLTLEDSERNELWIPHYEN 58
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 328 TKFQVLAESLPENARTCHDGLYRAIDTYLKSHP 360
TK VL+E++ + A+ GL++AI+ Y+ +HP
Sbjct: 121 TKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHP 153
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 187 EEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMM 246
E VS+ +++RT+ + + L + +G +F L + + YNAS LI L G++
Sbjct: 45 EXVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLI--LRGVDGIV 102
Query: 247 LEDANANDLLIPNYKNEDHAKLNSPEHN-TMHNIDVVQRI 285
+A + L N ++ + + N E+ T+ ++ +V ++
Sbjct: 103 FVADSAPNRLRANAESXRNXRENLAEYGLTLDDVPIVIQV 142
>pdb|3HTO|A Chain A, The Hemagglutinin Structure Of An Avian H1n1 Influenza A
Virus
pdb|3HTP|A Chain A, The Hemagglutinin Structure Of An Avian H1n1 Influenza A
Virus In Complex With Lsta
pdb|3HTQ|A Chain A, The Hemagglutinin Structure Of An Avian H1n1 Influenza A
Virus In Complex With Lstc
pdb|3HTT|A Chain A, The Hemagglutinin Structure Of An Avian H1n1 Influenza A
Virus In Complex With 2,3-Sialyllactose
Length = 324
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 362 LSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQ 421
L ++ +LCKL L L C A +L + + + ++
Sbjct: 33 LEDNHNGKLCKLNGIAPLQLGKCNVAGW-----------LLGNPECDLLLTANSWSYIIE 81
Query: 422 CDNSEQGDTQPSTSIEIKNLREELENVKT 450
NSE G P I+ + LRE+L +V +
Sbjct: 82 TSNSENGTCYPGEFIDYEELREQLSSVSS 110
>pdb|2Q5C|A Chain A, Crystal Structure Of Ntrc Family Transcriptional Regulator
From Clostridium Acetobutylicum
pdb|2Q5C|D Chain D, Crystal Structure Of Ntrc Family Transcriptional Regulator
From Clostridium Acetobutylicum
Length = 196
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 152 DHFMRIITTIKVKGTKPEIIGKCIMHYA-KKWLPGKEEVSVGQKEQRTIIENLVNLLPHQ 210
D +I+ +K + K + GK + A K+ L G E ++ G++ R IE +NL+ +
Sbjct: 129 DEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYG-ETINSGEESLRRAIEEALNLIEVR 187
Query: 211 DEG 213
+EG
Sbjct: 188 NEG 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,226,063
Number of Sequences: 62578
Number of extensions: 556570
Number of successful extensions: 1432
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1422
Number of HSP's gapped (non-prelim): 22
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)