Query 009928
Match_columns 522
No_of_seqs 194 out of 379
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 19:00:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 3.6E-90 7.9E-95 688.4 20.3 237 139-384 1-258 (258)
2 PF00651 BTB: BTB/POZ domain; 97.9 1.5E-05 3.1E-10 68.1 5.6 76 2-85 32-109 (111)
3 smart00225 BTB Broad-Complex, 97.8 3.8E-05 8.1E-10 61.4 5.2 65 2-68 20-84 (90)
4 PHA03098 kelch-like protein; P 97.6 0.00037 8.1E-09 76.0 11.8 143 2-180 32-180 (534)
5 KOG4441 Proteins containing BT 97.0 0.0079 1.7E-07 67.4 13.6 198 2-243 57-260 (571)
6 PHA02713 hypothetical protein; 97.0 0.0081 1.8E-07 67.0 12.7 195 2-241 47-246 (557)
7 PHA02790 Kelch-like protein; P 96.0 0.01 2.2E-07 64.9 5.9 94 2-112 42-136 (480)
8 PF11822 DUF3342: Domain of un 89.8 0.27 5.9E-06 51.6 3.3 76 3-85 26-102 (317)
9 smart00512 Skp1 Found in Skp1 80.0 2.8 6.2E-05 36.4 4.4 62 3-66 23-104 (104)
10 PF08581 Tup_N: Tup N-terminal 71.9 6.7 0.00014 33.5 4.4 31 438-468 34-64 (79)
11 PF01166 TSC22: TSC-22/dip/bun 64.5 13 0.00027 30.2 4.3 33 433-465 11-43 (59)
12 KOG2075 Topoisomerase TOP1-int 62.5 57 0.0012 36.6 10.2 148 7-180 145-294 (521)
13 PF14363 AAA_assoc: Domain ass 57.1 6.5 0.00014 34.3 1.7 42 337-379 30-71 (98)
14 PF04508 Pox_A_type_inc: Viral 55.1 16 0.00035 24.4 2.8 18 444-461 2-19 (23)
15 COG2433 Uncharacterized conser 48.9 1.3E+02 0.0028 34.8 10.4 67 300-368 299-367 (652)
16 KOG4603 TBP-1 interacting prot 46.9 21 0.00045 35.0 3.4 55 437-491 108-176 (201)
17 PF07407 Seadorna_VP6: Seadorn 42.6 32 0.0007 36.8 4.3 32 429-460 32-63 (420)
18 TIGR01834 PHA_synth_III_E poly 39.8 41 0.00089 35.8 4.6 30 442-471 288-317 (320)
19 TIGR02894 DNA_bind_RsfA transc 35.8 73 0.0016 30.8 5.2 29 435-463 103-131 (161)
20 COG3510 CmcI Cephalosporin hyd 35.3 28 0.00061 35.0 2.4 37 333-369 182-220 (237)
21 PF10473 CENP-F_leu_zip: Leuci 34.6 70 0.0015 30.2 4.8 35 433-467 77-111 (140)
22 PF00170 bZIP_1: bZIP transcri 34.4 1E+02 0.0022 24.5 5.2 23 441-463 38-60 (64)
23 PF09789 DUF2353: Uncharacteri 33.1 58 0.0013 34.7 4.5 37 433-469 76-112 (319)
24 PF14077 WD40_alt: Alternative 32.7 27 0.00058 27.2 1.4 20 445-464 13-32 (48)
25 PF10929 DUF2811: Protein of u 32.7 32 0.0007 27.8 1.9 19 346-364 8-26 (57)
26 KOG4682 Uncharacterized conser 32.2 55 0.0012 36.1 4.2 68 1-68 88-157 (488)
27 PF15294 Leu_zip: Leucine zipp 32.1 77 0.0017 33.2 5.1 39 432-470 128-166 (278)
28 PF07716 bZIP_2: Basic region 31.7 1E+02 0.0022 23.8 4.6 30 440-469 22-51 (54)
29 KOG4603 TBP-1 interacting prot 31.4 93 0.002 30.6 5.1 39 433-471 76-114 (201)
30 PF04977 DivIC: Septum formati 30.7 1.3E+02 0.0027 24.3 5.3 34 436-469 17-50 (80)
31 PF13815 Dzip-like_N: Iguana/D 30.6 1.5E+02 0.0032 26.7 6.1 53 395-465 64-116 (118)
32 PF03931 Skp1_POZ: Skp1 family 30.1 40 0.00087 26.8 2.1 37 3-43 22-58 (62)
33 smart00338 BRLZ basic region l 29.6 1.1E+02 0.0024 24.3 4.6 29 437-465 34-62 (65)
34 KOG4571 Activating transcripti 29.6 69 0.0015 33.7 4.2 41 430-470 249-289 (294)
35 PF11365 DUF3166: Protein of u 29.6 1.2E+02 0.0026 27.0 5.1 39 433-471 5-43 (96)
36 PF07989 Microtub_assoc: Micro 28.8 95 0.0021 26.2 4.2 37 431-467 38-74 (75)
37 PF07106 TBPIP: Tat binding pr 28.1 1.3E+02 0.0028 28.4 5.5 37 435-471 71-107 (169)
38 PHA01750 hypothetical protein 27.6 1.2E+02 0.0026 25.4 4.4 28 437-464 43-70 (75)
39 PF05529 Bap31: B-cell recepto 26.7 1.1E+02 0.0023 29.6 4.8 35 436-470 154-188 (192)
40 PRK14127 cell division protein 26.7 54 0.0012 29.7 2.6 30 431-460 39-68 (109)
41 PF11336 DUF3138: Protein of u 26.1 75 0.0016 35.3 3.9 27 433-459 22-48 (514)
42 PF11853 DUF3373: Protein of u 25.7 48 0.0011 37.2 2.5 33 437-470 26-58 (489)
43 PF11123 DNA_Packaging_2: DNA 24.1 51 0.0011 28.3 1.8 15 346-360 31-45 (82)
44 PRK13922 rod shape-determining 23.9 1.2E+02 0.0026 30.8 4.8 36 431-466 71-109 (276)
45 PF12017 Tnp_P_element: Transp 23.6 1.3E+02 0.0028 30.7 4.9 26 441-466 16-41 (236)
46 PF10552 ORF6C: ORF6C domain; 23.1 1E+02 0.0022 27.6 3.7 59 436-494 8-86 (116)
47 TIGR02209 ftsL_broad cell divi 22.8 2E+02 0.0044 23.7 5.2 35 437-471 25-59 (85)
48 PF10186 Atg14: UV radiation r 22.6 1.2E+02 0.0026 30.4 4.5 33 383-415 13-45 (302)
49 PF08776 VASP_tetra: VASP tetr 22.2 1.8E+02 0.004 22.0 4.1 14 453-466 14-27 (40)
50 PF10932 DUF2783: Protein of u 21.4 74 0.0016 26.1 2.1 22 346-370 11-32 (60)
51 PLN03205 ATR interacting prote 21.0 89 0.0019 34.7 3.3 29 436-464 134-162 (652)
52 PRK15322 invasion protein OrgB 20.8 2.1E+02 0.0045 28.9 5.5 86 275-360 88-204 (210)
53 PF13764 E3_UbLigase_R4: E3 ub 20.6 74 0.0016 37.9 2.8 67 278-362 260-335 (802)
54 PF10805 DUF2730: Protein of u 20.4 2.2E+02 0.0048 25.3 5.2 34 434-467 63-96 (106)
55 PF07106 TBPIP: Tat binding pr 20.3 1.6E+02 0.0035 27.7 4.6 19 349-367 17-35 (169)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=3.6e-90 Score=688.45 Aligned_cols=237 Identities=49% Similarity=0.921 Sum_probs=219.6
Q ss_pred CCceehhccccChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcCCCC-----------CCccchHhHHHHHHHHHhhC
Q 009928 139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGKE-----------EVSVGQKEQRTIIENLVNLL 207 (522)
Q Consensus 139 ~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~-----------~~~~~~~~qr~llE~iv~lL 207 (522)
.|||||||+.|++|+|+|||.+|+++||+|++||++|++||+||||+.. .......+||.+||+||+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL 80 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL 80 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999999999999999999999999961 12345789999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccccccccCCCCccccccCCCCCCcccchhHHHHHHH
Q 009928 208 PHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMD 287 (522)
Q Consensus 208 P~~k~~vsc~fL~~LLR~A~~l~as~~cr~~LE~rIg~qLdqAtldDLLIPs~~~~~~~~~~~~~~~tlyDVd~V~Riv~ 287 (522)
|.++++|||+|||+|||+|+++++|++||.+||+|||.|||||||||||||+ ++.++ +|+||||+|+|||+
T Consensus 81 P~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~--------~t~yDVd~V~riv~ 151 (258)
T PF03000_consen 81 PPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGE--------DTLYDVDLVQRIVE 151 (258)
T ss_pred CCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcc--------cchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 33332 19999999999999
Q ss_pred HHHhhhhhh----------hhhhccchhhhhhhhhhhhhhhhcCCCCCChhHHHHHHHhcCCcccccchhhHHHHHHHHh
Q 009928 288 YFLMHEQQQ----------QQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLK 357 (522)
Q Consensus 288 ~Fl~~~~~~----------~~~~~~~~l~kVakLvD~YLaEiA~D~nL~~skF~~LAe~lP~~AR~~~DgLYRAIDiYLK 357 (522)
+||.+++.. ...++..++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||||||
T Consensus 152 ~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk 231 (258)
T PF03000_consen 152 HFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLK 231 (258)
T ss_pred HHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHH
Confidence 999984321 1125678999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHhhhhhhcccccCCCCHHHh
Q 009928 358 SHPSLSEHDRRRLCKLMNCEKLSLDAC 384 (522)
Q Consensus 358 aHp~lse~Er~~lCr~mdc~KLS~EAc 384 (522)
+||+||++||++||++|||||||+|||
T Consensus 232 ~Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 232 AHPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HcccCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999999
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.94 E-value=1.5e-05 Score=68.11 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=66.3
Q ss_pred ccccHHHHHhcCCC-CCCCccceEecCCCCChHHHHHHHHhhcCCccccC-cchhhHHHhhHHhhcCcccccCCchHHHH
Q 009928 2 SKCGYIARLELQPS-ISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN-PNNIAPLRCASEFLDMSEEYEDGNLISKT 79 (522)
Q Consensus 2 Sksg~l~rl~~~~~-~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it-~~NVa~LrCAAeyLeMtE~~~~gNL~~kt 79 (522)
++|.||++++.... ......+|.+++++ +++|+.+.+|||+..+.++ ..|+..+..+|.+++|.+ |...+
T Consensus 32 ~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~~~ 103 (111)
T PF00651_consen 32 ARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKKAC 103 (111)
T ss_dssp HHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHHHH
T ss_pred ccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 57999999999873 22133478888888 8899999999999999998 999999999999999996 99999
Q ss_pred HHHhhh
Q 009928 80 EAFLTL 85 (522)
Q Consensus 80 E~fL~~ 85 (522)
+.||.+
T Consensus 104 ~~~l~~ 109 (111)
T PF00651_consen 104 EKFLQE 109 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999976
No 3
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.79 E-value=3.8e-05 Score=61.44 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=54.7
Q ss_pred ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcc
Q 009928 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (522)
Q Consensus 2 Sksg~l~rl~~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE 68 (522)
++|.++++++...........+.+.| ..+++|+.+-+|||+.++.+++.|+..+..+|+|++|.+
T Consensus 20 ~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 20 ACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred hcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 46899999998654322345677776 579999999999999999999999999999999999976
No 4
>PHA03098 kelch-like protein; Provisional
Probab=97.64 E-value=0.00037 Score=76.03 Aligned_cols=143 Identities=15% Similarity=0.253 Sum_probs=99.6
Q ss_pred ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHHHHHH
Q 009928 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (522)
Q Consensus 2 Sksg~l~rl~~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~ktE~ 81 (522)
++|.||+.++...-. ..+|+|++ -+++|+.+.+|-|..+++|+..||..|--||.+|+|.+ |....+.
T Consensus 32 a~S~yF~~mf~~~~~---~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~ 99 (534)
T PHA03098 32 SSSEYFKKMFKNNFK---ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCIN 99 (534)
T ss_pred hhhHHHHHHHhCCCC---CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 579999999875432 34688876 68999999999999999999999999999999999997 9999999
Q ss_pred HhhhhhcCChHHHHHHHhhhccccchhhhhc---hHHHHHHHHHHHhccCCcccccccCCCCceehhccccChHHHHHHH
Q 009928 82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRII 158 (522)
Q Consensus 82 fL~~vvl~sW~dsi~vL~sce~llp~aE~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi 158 (522)
||...+ + ...|-.++..|+..+ +.+.|.+-|+..... +.. -+|...|+.+....+|
T Consensus 100 ~l~~~l--~-------~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~-------v~~-----~~~f~~l~~~~l~~ll 158 (534)
T PHA03098 100 YIIKII--D-------DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIEL-------IYN-----DPDFIYLSKNELIKIL 158 (534)
T ss_pred HHHHhC--C-------HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-------Hhc-----CchhhcCCHHHHHHHh
Confidence 998754 2 234444555555544 455666666543210 000 1466777776666654
Q ss_pred HHHHhcCC---CchhHHHHHHHHHH
Q 009928 159 TTIKVKGT---KPEIIGKCIMHYAK 180 (522)
Q Consensus 159 ~am~~~g~---~~~~i~~~l~~Ya~ 180 (522)
. +..+ +++.+-.+++.+++
T Consensus 159 ~---~~~L~v~~E~~v~~av~~W~~ 180 (534)
T PHA03098 159 S---DDKLNVSSEDVVLEIIIKWLT 180 (534)
T ss_pred c---CCCcCcCCHHHHHHHHHHHHh
Confidence 4 3332 35556666665554
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.04 E-value=0.0079 Score=67.45 Aligned_cols=198 Identities=15% Similarity=0.266 Sum_probs=127.6
Q ss_pred ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHHHHHH
Q 009928 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (522)
Q Consensus 2 Sksg~l~rl~~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~ktE~ 81 (522)
+-|.||+-++...-......+|+|.+ .-++++++...|+|..+++|+-.||-.|-=||.+|+|++ +..-.-.
T Consensus 57 a~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~ 128 (571)
T KOG4441|consen 57 ACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCE 128 (571)
T ss_pred hccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHH
Confidence 45789999988532222556899998 778999999999999999999999999999999999998 6777888
Q ss_pred HhhhhhcCChHHHHH-----HHhhhccccchhhhhchHHHHHHHHHHHhccCCcccccccCCCCceehhccccChHHHHH
Q 009928 82 FLTLVILSSWKETIT-----VLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMR 156 (522)
Q Consensus 82 fL~~vvl~sW~dsi~-----vL~sce~llp~aE~l~iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~r 156 (522)
||..-+.. ..++. -+.+|..|...|.+. |.+...+- |=-||--.|+.+.+..
T Consensus 129 fL~~~l~~--~Nclgi~~~a~~~~~~~L~~~a~~~-i~~~F~~v--------------------~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 129 FLESQLDP--SNCLGIRRFAELHSCTELLEVADEY-ILQHFAEV--------------------SKTEEFLLLSLEELIG 185 (571)
T ss_pred HHHhcCCH--HHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHH--------------------hccHHhhCCCHHHHHh
Confidence 88875432 23332 234566555554432 22222221 1135656688777766
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhcCCCCCCccchHhHHHHHHHHHhhCCCCC-CcccHHHHHHHHHHHHhcCCCHHH
Q 009928 157 IITTIKVKGTKPEIIGKCIMHYAKKWLPGKEEVSVGQKEQRTIIENLVNLLPHQD-EGVSCKFFLQMLKMAMVYNASPAL 235 (522)
Q Consensus 157 vi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~qr~llE~iv~lLP~~k-~~vsc~fL~~LLR~A~~l~as~~c 235 (522)
+|..-.-..-+++.+..+++ +|+.-.. ...+..+ ..+|..-+ .-+|-.||.......-.+..++.|
T Consensus 186 ll~~d~l~v~~E~~vf~a~~----~Wv~~d~-----~~R~~~~----~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c 252 (571)
T KOG4441|consen 186 LLSSDDLNVDSEEEVFEAAM----RWVKHDF-----EEREEHL----PALLEAVRLPLLPPQFLVEIVESEPLIKRDSAC 252 (571)
T ss_pred hccccCCCcCCHHHHHHHHH----HHHhcCH-----hhHHHHH----HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHH
Confidence 66554433334555555554 4543210 0111111 11221111 336778999999999999999999
Q ss_pred HHHHHHHH
Q 009928 236 ISELEKRV 243 (522)
Q Consensus 236 r~~LE~rI 243 (522)
+.-|..=.
T Consensus 253 ~~~l~ea~ 260 (571)
T KOG4441|consen 253 RDLLDEAK 260 (571)
T ss_pred HHHHHHHH
Confidence 99886544
No 6
>PHA02713 hypothetical protein; Provisional
Probab=96.96 E-value=0.0081 Score=67.00 Aligned_cols=195 Identities=15% Similarity=0.191 Sum_probs=112.6
Q ss_pred ccccHHHHHhcCCCC-CCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHHHHH
Q 009928 2 SKCGYIARLELQPSI-SNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (522)
Q Consensus 2 Sksg~l~rl~~~~~~-~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~ktE 80 (522)
+.|.||+.|+...-. +....+|+|.++ -+++|+.+.+|.|..+ ||+.||-.|--||.||+|++ |....+
T Consensus 47 a~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~ 116 (557)
T PHA02713 47 AGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTDCE 116 (557)
T ss_pred hcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHH
Confidence 579999999975321 212357899887 4899999999999986 79999999999999999997 889999
Q ss_pred HHhhhhhcCChHHHHHHHhhhccccchhhhhchHHHHHHHHHHH---hccCCcccccccCCCCceehhccccChHHHHHH
Q 009928 81 AFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWK---ASRENSTTEDIANRQGWWFDDVATLGIDHFMRI 157 (522)
Q Consensus 81 ~fL~~vvl~sW~dsi~vL~sce~llp~aE~l~iv~RCidsla~k---a~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rv 157 (522)
.||.+.+-. ..++.+++...... .+.+...|-+-|+.. ++. -++...|+.+....+
T Consensus 117 ~~l~~~l~~--~NCl~i~~~~~~~~----~~~L~~~a~~~i~~~f~~v~~---------------~~ef~~L~~~~l~~l 175 (557)
T PHA02713 117 SYIKDYTNH--DTCIYMYHRLYEMS----HIPIVKYIKRMLMSNIPTLIT---------------TDAFKKTVFEILFDI 175 (557)
T ss_pred HHHHhhCCc--cchHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhC---------------ChhhhhCCHHHHHHH
Confidence 999875532 24444442111110 001222222222211 111 155667777666666
Q ss_pred HHHHHhcCC-CchhHHHHHHHHHHhhcCCCCCCccchHhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcCCCHHHH
Q 009928 158 ITTIKVKGT-KPEIIGKCIMHYAKKWLPGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALI 236 (522)
Q Consensus 158 i~am~~~g~-~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~qr~llE~iv~lLP~~k~~vsc~fL~~LLR~A~~l~as~~cr 236 (522)
|..=..-.+ +.+.|-++++.+.+.-.. .......|++.| ++ |. ++-++++ .+...-.+..++.|+
T Consensus 176 L~~d~~l~v~~Ee~v~eav~~W~~~d~~-------~r~~~~~ll~~V-R~-~~----l~~~~~~-~~~~~~~i~~~~~c~ 241 (557)
T PHA02713 176 ISTNDNVYLYREGYKVTILLKWLEYNYI-------TEEQLLCILSCI-DI-QN----LDKKSRL-LLYSNKTINMYPSCI 241 (557)
T ss_pred hccccccCCCcHHHHHHHHHHHHhcCHH-------HHHHHhhhHhhh-hH-hh----cchhhhh-hhcchHHHHhhHHHH
Confidence 654111123 355676776655442110 011111334332 21 22 2334555 344445566788898
Q ss_pred HHHHH
Q 009928 237 SELEK 241 (522)
Q Consensus 237 ~~LE~ 241 (522)
.-|+.
T Consensus 242 ~~l~~ 246 (557)
T PHA02713 242 QFLLD 246 (557)
T ss_pred HHHhh
Confidence 87755
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=96.01 E-value=0.01 Score=64.88 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=71.3
Q ss_pred ccccHHHHHhcCC-CCCCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHHHHH
Q 009928 2 SKCGYIARLELQP-SISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (522)
Q Consensus 2 Sksg~l~rl~~~~-~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~ktE 80 (522)
+-|.||+.|+... +++ ..+|.+..+--.+++++.+..|-|.++++||..||-.|-.||.||+|++ ++....
T Consensus 42 a~S~YFraMF~~~~~Es--~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~ 113 (480)
T PHA02790 42 KLSPYFRTHLRQKYTKN--KDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCI 113 (480)
T ss_pred hcCHHHHHHhcCCcccc--ccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHH
Confidence 4688999998742 222 2245553223458999999999999999999999999999999999997 889999
Q ss_pred HHhhhhhcCChHHHHHHHhhhccccchhhhhc
Q 009928 81 AFLTLVILSSWKETITVLKSCKNLSPWAENLQ 112 (522)
Q Consensus 81 ~fL~~vvl~sW~dsi~vL~sce~llp~aE~l~ 112 (522)
.||.+.+-. ..|=.+..+|+..+
T Consensus 114 ~fL~~~l~~---------~NCl~i~~~A~~y~ 136 (480)
T PHA02790 114 NFILRDFRK---------EYCVECYMMGIEYG 136 (480)
T ss_pred HHHHhhCCc---------chHHHHHHHHHHhC
Confidence 999886532 24545555565554
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=89.82 E-value=0.27 Score=51.64 Aligned_cols=76 Identities=20% Similarity=0.335 Sum_probs=55.9
Q ss_pred cccHHHHHhcCC-CCCCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHHHHHH
Q 009928 3 KCGYIARLELQP-SISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (522)
Q Consensus 3 ksg~l~rl~~~~-~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~ktE~ 81 (522)
+=+||+.++... +++....+|.|. +-=.-.+||.-.++++|-...|||.||+++---++||+|++ |++.+=.
T Consensus 26 ~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl~ 98 (317)
T PF11822_consen 26 EMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECLQ 98 (317)
T ss_pred hhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHHH
Confidence 446888888531 111112233331 22345799999999999999999999999999999999997 8888888
Q ss_pred Hhhh
Q 009928 82 FLTL 85 (522)
Q Consensus 82 fL~~ 85 (522)
|...
T Consensus 99 y~~~ 102 (317)
T PF11822_consen 99 YCHD 102 (317)
T ss_pred HHHH
Confidence 8755
No 9
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=80.00 E-value=2.8 Score=36.43 Aligned_cols=62 Identities=15% Similarity=0.262 Sum_probs=42.4
Q ss_pred cccHHHHHhcCCCCCC-CccceEecCCCCChHHHHHHHHhhcCCcc-------------------ccCcchhhHHHhhHH
Q 009928 3 KCGYIARLELQPSISN-LGYDLKLENFPGGSETFEIILKFCYGLPI-------------------AFNPNNIAPLRCASE 62 (522)
Q Consensus 3 ksg~l~rl~~~~~~~~-~~~~i~L~dfPGGaeaFEl~akFCYG~~i-------------------~it~~NVa~LrCAAe 62 (522)
.|+.|+.++.+..... +...|.|++++ +.+++++..||+--+- .+...++--|-.||.
T Consensus 23 ~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAn 100 (104)
T smart00512 23 QSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAAN 100 (104)
T ss_pred HHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHH
Confidence 5888999998654321 22467777777 6899999999984210 144556677777888
Q ss_pred hhcC
Q 009928 63 FLDM 66 (522)
Q Consensus 63 yLeM 66 (522)
||++
T Consensus 101 yL~I 104 (104)
T smart00512 101 YLDI 104 (104)
T ss_pred hhCC
Confidence 8764
No 10
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=71.88 E-value=6.7 Score=33.49 Aligned_cols=31 Identities=19% Similarity=0.533 Sum_probs=26.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009928 438 IKNLREELENVKTRMAELQKDYSELQREYEK 468 (522)
Q Consensus 438 ~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k 468 (522)
+...=.||+.||..|.+||..+..||++++.
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445568999999999999999999988864
No 11
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.49 E-value=13 Score=30.24 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=28.0
Q ss_pred cchHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009928 433 STSIEIKNLREELENVKTRMAELQKDYSELQRE 465 (522)
Q Consensus 433 ~~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~ 465 (522)
+.+.|.+.||..|..+..|+.+||.|+.-+|+-
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346688999999999999999999999988765
No 12
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=62.53 E-value=57 Score=36.62 Aligned_cols=148 Identities=12% Similarity=0.194 Sum_probs=95.0
Q ss_pred HHHHhcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHHHHHHHhhhh
Q 009928 7 IARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLV 86 (522)
Q Consensus 7 l~rl~~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~ktE~fL~~v 86 (522)
+-++....-......+|+++|+ -|.+|+---||=|+-.+.+.+.||-.+.=+|. .|-.+-|...+-+||...
T Consensus 145 FdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~Ak------KY~VpaLer~CVkflr~~ 216 (521)
T KOG2075|consen 145 FDAMFYGGLAEDASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAK------KYLVPALERQCVKFLRKN 216 (521)
T ss_pred HHHHhccCcccccCceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHh
Confidence 4444444322212568888876 58999999999999999999999998877764 233556888888888886
Q ss_pred hcCChHHHHHHHhhhccccchhhhhchHHHHHHHHHHHh--ccCCcccccccCCCCceehhccccChHHHHHHHHHHHhc
Q 009928 87 ILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKA--SRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVK 164 (522)
Q Consensus 87 vl~sW~dsi~vL~sce~llp~aE~l~iv~RCidsla~ka--~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi~am~~~ 164 (522)
.+. .....-|-+|-.+ .++=.+.++|++.|.-.. |.++ =||-|.-.+ .|+|..|+.. ...
T Consensus 217 l~~--~naf~~L~q~A~l---f~ep~Li~~c~e~id~~~~~al~~-----------EGf~did~~-~dt~~evl~r-~~l 278 (521)
T KOG2075|consen 217 LMA--DNAFLELFQRAKL---FDEPSLISICLEVIDKSFEDALTP-----------EGFCDIDST-RDTYEEVLRR-DTL 278 (521)
T ss_pred cCC--hHHHHHHHHHHHh---hcCHHHHHHHHHHhhhHHHhhhCc-----------cceeehhhH-HHHHHHHHhh-ccc
Confidence 543 3444555555443 355568899999886432 2222 266666555 7777776643 112
Q ss_pred CCCchhHHHHHHHHHH
Q 009928 165 GTKPEIIGKCIMHYAK 180 (522)
Q Consensus 165 g~~~~~i~~~l~~Ya~ 180 (522)
.++.-.+-+++..|+.
T Consensus 279 ~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 279 EAREFRLFEAALKWAE 294 (521)
T ss_pred chhHHHHHHHHHhhcc
Confidence 2344445555555554
No 13
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=57.05 E-value=6.5 Score=34.27 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=32.6
Q ss_pred cCCcccccchhhHHHHHHHHhhCCCCCHHhhhhhhcccccCCC
Q 009928 337 LPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKL 379 (522)
Q Consensus 337 lP~~AR~~~DgLYRAIDiYLKaHp~lse~Er~~lCr~mdc~KL 379 (522)
+|++..-....+|+|+.+||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4444556778999999999999987776 78888877776653
No 14
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=55.08 E-value=16 Score=24.43 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009928 444 ELENVKTRMAELQKDYSE 461 (522)
Q Consensus 444 el~~mr~rv~eLe~~c~~ 461 (522)
||++.|.|+.+||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999999988654
No 15
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.89 E-value=1.3e+02 Score=34.84 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=55.3
Q ss_pred hccchhhhhhhhhhhhhhhhcCCCCCChhHHHHHHHhcCCcccccc--hhhHHHHHHHHhhCCCCCHHhhh
Q 009928 300 QQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCH--DGLYRAIDTYLKSHPSLSEHDRR 368 (522)
Q Consensus 300 ~~~~~l~kVakLvD~YLaEiA~D~nL~~skF~~LAe~lP~~AR~~~--DgLYRAIDiYLKaHp~lse~Er~ 368 (522)
|.+....|+|.-++.-|. -||..|++++=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+
T Consensus 299 p~P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~ 367 (652)
T COG2433 299 PAPETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERK 367 (652)
T ss_pred CChHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556778888888887764 68999999999998888888888887 89999999999877777777765
No 16
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=46.93 E-value=21 Score=35.00 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=32.7
Q ss_pred hHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcccCC------------ccCCccchhhhhhcccC
Q 009928 437 EIKNLREE--LENVKTRMAELQKDYSELQREYEKLSNKHK------------IVSSWSLGWRKIKNSFH 491 (522)
Q Consensus 437 E~~~lk~e--l~~mr~rv~eLe~~c~~m~~~~~k~~~~~k------------~~~~~~~~wkkl~~~~~ 491 (522)
|+++|... ++.|+....+|-++|..|+..++++..... .--..-++|||.+|.|.
T Consensus 108 Eik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ 176 (201)
T KOG4603|consen 108 EIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFR 176 (201)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555443 466677777777777777666665543211 11234578999988654
No 17
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.65 E-value=32 Score=36.77 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCCCcchHhHhhHHHHHHHHHHHHHHHHHHHH
Q 009928 429 DTQPSTSIEIKNLREELENVKTRMAELQKDYS 460 (522)
Q Consensus 429 ~~~~~~~~E~~~lk~el~~mr~rv~eLe~~c~ 460 (522)
++-..+++||..||.|.+.+|.+|..||.+..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456778888888888888888888876554
No 18
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=39.80 E-value=41 Score=35.81 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009928 442 REELENVKTRMAELQKDYSELQREYEKLSN 471 (522)
Q Consensus 442 k~el~~mr~rv~eLe~~c~~m~~~~~k~~~ 471 (522)
|.||+.+..|+.|||++...|+++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457999999999999999999999887654
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.83 E-value=73 Score=30.83 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=15.9
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009928 435 SIEIKNLREELENVKTRMAELQKDYSELQ 463 (522)
Q Consensus 435 ~~E~~~lk~el~~mr~rv~eLe~~c~~m~ 463 (522)
..||+.|+.|+..++.++.+||++...++
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555443
No 20
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=35.29 E-value=28 Score=34.99 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=28.8
Q ss_pred HHHhcC--CcccccchhhHHHHHHHHhhCCCCCHHhhhh
Q 009928 333 LAESLP--ENARTCHDGLYRAIDTYLKSHPSLSEHDRRR 369 (522)
Q Consensus 333 LAe~lP--~~AR~~~DgLYRAIDiYLKaHp~lse~Er~~ 369 (522)
+.+-+| +..+..-+|=|+||.-|||.||+==|.++.+
T Consensus 182 ~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~~ 220 (237)
T COG3510 182 NVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTSR 220 (237)
T ss_pred cccCCCCcccchhcCCChHHHHHHHHHhCCcccccchhh
Confidence 344566 6666679999999999999999766666653
No 21
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.56 E-value=70 Score=30.19 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=23.8
Q ss_pred cchHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009928 433 STSIEIKNLREELENVKTRMAELQKDYSELQREYE 467 (522)
Q Consensus 433 ~~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~ 467 (522)
+++.|+..|-.+++.|+.||.|||.-++.....++
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44566777777777777777777777666654443
No 22
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.39 E-value=1e+02 Score=24.51 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009928 441 LREELENVKTRMAELQKDYSELQ 463 (522)
Q Consensus 441 lk~el~~mr~rv~eLe~~c~~m~ 463 (522)
|..+.+.|+..+..|+.++..|+
T Consensus 38 L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 38 LESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 23
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=33.13 E-value=58 Score=34.67 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.8
Q ss_pred cchHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009928 433 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKL 469 (522)
Q Consensus 433 ~~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~ 469 (522)
.++.+|..|+.|++.+|.++.|++.+|..++..+.+.
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 4467899999999999999999999999999887663
No 24
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=32.70 E-value=27 Score=27.18 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009928 445 LENVKTRMAELQKDYSELQR 464 (522)
Q Consensus 445 l~~mr~rv~eLe~~c~~m~~ 464 (522)
-+++|.||+|||.|...+++
T Consensus 13 ~e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred cchheeeHHHHHHHHHHHHH
Confidence 46788999999999987763
No 25
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=32.67 E-value=32 Score=27.84 Aligned_cols=19 Identities=21% Similarity=0.669 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHhhCCCCCH
Q 009928 346 DGLYRAIDTYLKSHPSLSE 364 (522)
Q Consensus 346 DgLYRAIDiYLKaHp~lse 364 (522)
-.||.|+..||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3599999999999998765
No 26
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=32.23 E-value=55 Score=36.11 Aligned_cols=68 Identities=7% Similarity=0.055 Sum_probs=57.3
Q ss_pred CccccHHHHHhcCCCCC--CCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcc
Q 009928 1 MSKCGYIARLELQPSIS--NLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (522)
Q Consensus 1 ~Sksg~l~rl~~~~~~~--~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE 68 (522)
++-|+||.-++..+-.. .+...++|.|=--.+.||..|-+==|-..|+|.++-|+.+-.||.+|...-
T Consensus 88 L~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldg 157 (488)
T KOG4682|consen 88 LFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDG 157 (488)
T ss_pred eeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhh
Confidence 35689999998865432 134577889988999999999999999999999999999999999998763
No 27
>PF15294 Leu_zip: Leucine zipper
Probab=32.14 E-value=77 Score=33.20 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=32.7
Q ss_pred CcchHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009928 432 PSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLS 470 (522)
Q Consensus 432 ~~~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~~ 470 (522)
..+..|+..|+.|.+++|.|+..+|++|..+-.|-.++.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~ 166 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLE 166 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999998865555443
No 28
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=31.69 E-value=1e+02 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009928 440 NLREELENVKTRMAELQKDYSELQREYEKL 469 (522)
Q Consensus 440 ~lk~el~~mr~rv~eLe~~c~~m~~~~~k~ 469 (522)
.-|..++.|..+|.+|+.+...|++++..+
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888887765
No 29
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.41 E-value=93 Score=30.64 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=33.3
Q ss_pred cchHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009928 433 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 471 (522)
Q Consensus 433 ~~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~~~ 471 (522)
....|...|..++.++..++.+|++.|+.|..||.-+.+
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999888776654
No 30
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.71 E-value=1.3e+02 Score=24.28 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=25.1
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009928 436 IEIKNLREELENVKTRMAELQKDYSELQREYEKL 469 (522)
Q Consensus 436 ~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~ 469 (522)
.+...++.++..++.++.+++.+-..++++++++
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777777777777777776
No 31
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.58 E-value=1.5e+02 Score=26.72 Aligned_cols=53 Identities=15% Similarity=0.373 Sum_probs=33.6
Q ss_pred chhHHHHHHHHhhhhhhhcccCCCCccCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009928 395 LRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQRE 465 (522)
Q Consensus 395 lr~vVQvLf~eQ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~ 465 (522)
++..+|=|+.-|-.|-..+. .+..+++.+..+.++++..+.+++.++..+|+|
T Consensus 64 aQl~ieYLl~~q~~L~~~~~------------------~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLE------------------QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888887776644322 224455666666666777777777666666655
No 32
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=30.11 E-value=40 Score=26.77 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=28.2
Q ss_pred cccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHHhhc
Q 009928 3 KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCY 43 (522)
Q Consensus 3 ksg~l~rl~~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCY 43 (522)
.|+.|+.++.+..+. +. .|.|+++. +.+++.+..+|+
T Consensus 22 ~S~~i~~ml~~~~~~-~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 22 QSKTIKNMLEDLGDE-DE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp TSHHHHHHHHCTCCC-GT-EEEETTS---HHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhccc-cc-ccccCccC--HHHHHHHHHHHH
Confidence 588999999876543 22 68888776 479999999997
No 33
>smart00338 BRLZ basic region leucin zipper.
Probab=29.63 E-value=1.1e+02 Score=24.34 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=14.9
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009928 437 EIKNLREELENVKTRMAELQKDYSELQRE 465 (522)
Q Consensus 437 E~~~lk~el~~mr~rv~eLe~~c~~m~~~ 465 (522)
+.+.|..+.+.|+.++..|+.++..++++
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555444
No 34
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=29.60 E-value=69 Score=33.71 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=32.7
Q ss_pred CCCcchHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009928 430 TQPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLS 470 (522)
Q Consensus 430 ~~~~~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~~ 470 (522)
+|.++..|.+.|...=+.+|.++.+||+|..-||+-|.-.-
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777878888999999999999999998885543
No 35
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.60 E-value=1.2e+02 Score=26.99 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=32.4
Q ss_pred cchHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009928 433 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 471 (522)
Q Consensus 433 ~~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~~~ 471 (522)
.+++..+=.+.|-+-||..++|||.+-..|..|+.|...
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666778999999999999999999999998754
No 36
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=28.76 E-value=95 Score=26.18 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=28.2
Q ss_pred CCcchHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009928 431 QPSTSIEIKNLREELENVKTRMAELQKDYSELQREYE 467 (522)
Q Consensus 431 ~~~~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~ 467 (522)
......||-+||.+++.|+..+.++++......+.++
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778888999988888888888887776666554
No 37
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.08 E-value=1.3e+02 Score=28.45 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=22.4
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009928 435 SIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 471 (522)
Q Consensus 435 ~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~~~ 471 (522)
..|...|..++..++.++.+|+.+++.++.++..+.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345566666666666666666666666666655543
No 38
>PHA01750 hypothetical protein
Probab=27.56 E-value=1.2e+02 Score=25.45 Aligned_cols=28 Identities=36% Similarity=0.680 Sum_probs=13.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009928 437 EIKNLREELENVKTRMAELQKDYSELQR 464 (522)
Q Consensus 437 E~~~lk~el~~mr~rv~eLe~~c~~m~~ 464 (522)
|...|+.|++..+.|.-+||++...+++
T Consensus 43 ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 43 ELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444455555555444455444444443
No 39
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.73 E-value=1.1e+02 Score=29.57 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=24.8
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009928 436 IEIKNLREELENVKTRMAELQKDYSELQREYEKLS 470 (522)
Q Consensus 436 ~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~~ 470 (522)
.++..++.|+++++..+.+-|++...||.|.+.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777877777654
No 40
>PRK14127 cell division protein GpsB; Provisional
Probab=26.72 E-value=54 Score=29.70 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=17.9
Q ss_pred CCcchHhHhhHHHHHHHHHHHHHHHHHHHH
Q 009928 431 QPSTSIEIKNLREELENVKTRMAELQKDYS 460 (522)
Q Consensus 431 ~~~~~~E~~~lk~el~~mr~rv~eLe~~c~ 460 (522)
+....+||..|+.++.+++.++.+++.+-.
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666666666666666666665444
No 41
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=26.14 E-value=75 Score=35.32 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.0
Q ss_pred cchHhHhhHHHHHHHHHHHHHHHHHHH
Q 009928 433 STSIEIKNLREELENVKTRMAELQKDY 459 (522)
Q Consensus 433 ~~~~E~~~lk~el~~mr~rv~eLe~~c 459 (522)
+...+|++|+.+|..+|.+|.|||++.
T Consensus 22 a~a~~i~~L~~ql~aLq~~v~eL~~~l 48 (514)
T PF11336_consen 22 ATADQIKALQAQLQALQDQVNELRAKL 48 (514)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346689999999999999999998763
No 42
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.74 E-value=48 Score=37.21 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=21.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009928 437 EIKNLREELENVKTRMAELQKDYSELQREYEKLS 470 (522)
Q Consensus 437 E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~~ 470 (522)
|...+| +|+.++.++.|||++...|+.+++|..
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHhhcccccccchhh
Confidence 445555 677777777777777776666665543
No 43
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=24.08 E-value=51 Score=28.26 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHhhCC
Q 009928 346 DGLYRAIDTYLKSHP 360 (522)
Q Consensus 346 DgLYRAIDiYLKaHp 360 (522)
-.||-||+.||..|.
T Consensus 31 PQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHK 45 (82)
T ss_pred hHHHHHHHHHHHHcc
Confidence 479999999999997
No 44
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.86 E-value=1.2e+02 Score=30.83 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=25.1
Q ss_pred CCcchHhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 009928 431 QPSTSIEIKNLREELENVKTRMAEL---QKDYSELQREY 466 (522)
Q Consensus 431 ~~~~~~E~~~lk~el~~mr~rv~eL---e~~c~~m~~~~ 466 (522)
...+..||+.||.|++.++.++.++ +.|-..+++.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778999999999988888855 45555555443
No 45
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.62 E-value=1.3e+02 Score=30.66 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009928 441 LREELENVKTRMAELQKDYSELQREY 466 (522)
Q Consensus 441 lk~el~~mr~rv~eLe~~c~~m~~~~ 466 (522)
++.|...||.++.+||++...+++++
T Consensus 16 ~~~e~~~Lk~kir~le~~l~~Lk~~l 41 (236)
T PF12017_consen 16 LKIENKKLKKKIRRLEKELKKLKQKL 41 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 46
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=23.13 E-value=1e+02 Score=27.59 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=40.0
Q ss_pred HhHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhc-----cc------C--CccCCccchhhhhhcccCCCC
Q 009928 436 IEIKNLREELENVKTRMAELQ-------KDYSELQREYEKLS-----NK------H--KIVSSWSLGWRKIKNSFHSKA 494 (522)
Q Consensus 436 ~E~~~lk~el~~mr~rv~eLe-------~~c~~m~~~~~k~~-----~~------~--k~~~~~~~~wkkl~~~~~~~~ 494 (522)
+.++++..+++.+..+|.+|| .+|..+++.+.+-. .+ . .+...++..|+.+++.|+-.+
T Consensus 8 ~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v~~rv~~~lgg~~s~ay~~~~~~~k~f~~i~~~lk~~F~V~s 86 (116)
T PF10552_consen 8 QATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAVKSRVYELLGGKGSPAYKDKSFRRKLFSDIYRDLKRHFGVPS 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhccccchhhhhHHhHHHHHHHHHHHHHHhCCch
Confidence 345677788888999998887 56777766554311 10 1 123567889999999888765
No 47
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.79 E-value=2e+02 Score=23.69 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=26.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009928 437 EIKNLREELENVKTRMAELQKDYSELQREYEKLSN 471 (522)
Q Consensus 437 E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~~~ 471 (522)
++..+..++++++.++.+++.+...++.|+.++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566777888888888888888888888877654
No 48
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.60 E-value=1.2e+02 Score=30.39 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=25.8
Q ss_pred HhHHHHhCCCCCchhHHHHHHHHhhhhhhhccc
Q 009928 383 ACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQE 415 (522)
Q Consensus 383 Ac~HAaQNeRLPlr~vVQvLf~eQ~~lr~~~~~ 415 (522)
-|.|-++|.-..++.-++-+..+.-+++..+..
T Consensus 13 ~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 13 YCANCVNNRLLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588889997788888888888887777765543
No 49
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=22.16 E-value=1.8e+02 Score=22.01 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 009928 453 AELQKDYSELQREY 466 (522)
Q Consensus 453 ~eLe~~c~~m~~~~ 466 (522)
.|+-+|...||+++
T Consensus 14 ~EvrkEl~K~K~EI 27 (40)
T PF08776_consen 14 EEVRKELQKVKEEI 27 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 50
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=21.44 E-value=74 Score=26.07 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHhhCCCCCHHhhhhh
Q 009928 346 DGLYRAIDTYLKSHPSLSEHDRRRL 370 (522)
Q Consensus 346 DgLYRAIDiYLKaHp~lse~Er~~l 370 (522)
|+.|.+ .+.+|.+||++|-..+
T Consensus 11 D~fY~~---Li~aH~gLs~e~S~~l 32 (60)
T PF10932_consen 11 DDFYEA---LIEAHRGLSDEQSAAL 32 (60)
T ss_pred hHHHHH---HHHHHhCCCHHHHHHH
Confidence 999998 5899999999986543
No 51
>PLN03205 ATR interacting protein; Provisional
Probab=21.03 E-value=89 Score=34.71 Aligned_cols=29 Identities=31% Similarity=0.682 Sum_probs=26.3
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009928 436 IEIKNLREELENVKTRMAELQKDYSELQR 464 (522)
Q Consensus 436 ~E~~~lk~el~~mr~rv~eLe~~c~~m~~ 464 (522)
-|+..||.|++++..++.+.|.+|+.+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (652)
T PLN03205 134 LEIDRLKKELERVSKQLLDVEQECSQLKK 162 (652)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 37899999999999999999999998764
No 52
>PRK15322 invasion protein OrgB; Provisional
Probab=20.81 E-value=2.1e+02 Score=28.91 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=56.9
Q ss_pred cccchhHHHHHHHHHHhhhhhhhhh---hccchhhhhhhhhhhhhhhhcCCC--------------------CCChhHHH
Q 009928 275 TMHNIDVVQRIMDYFLMHEQQQQQK---QQNMGKTNVSKILDNYLAEVARDP--------------------NLSITKFQ 331 (522)
Q Consensus 275 tlyDVd~V~Riv~~Fl~~~~~~~~~---~~~~~l~kVakLvD~YLaEiA~D~--------------------nL~~skF~ 331 (522)
.+-|+|...++++.|+..-...... .-+..-+.-+.-+-.||.+..+++ ..+|..|+
T Consensus 88 ~Ld~pd~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~rFV~~~g~qIaEFsPq~~v 167 (210)
T PRK15322 88 AVDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQRFIMSCGDQIAEFSPEQFV 167 (210)
T ss_pred HccCHHHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCCceEEEeCCchhccCHHHHH
Confidence 3457889999999999854432210 012334455556667777766543 46899999
Q ss_pred HHHHh--------cCCcccccchhhHHHHHHHHhhCC
Q 009928 332 VLAES--------LPENARTCHDGLYRAIDTYLKSHP 360 (522)
Q Consensus 332 ~LAe~--------lP~~AR~~~DgLYRAIDiYLKaHp 360 (522)
+.|+. +|.-+|...||=-.|.=-|||.|-
T Consensus 168 ~~a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~~ 204 (210)
T PRK15322 168 ETAVGVIKHHLDELPQDCRTISDNAINALIDEWKTKT 204 (210)
T ss_pred HHHHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHhc
Confidence 99986 566677777777777666777663
No 53
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=20.61 E-value=74 Score=37.89 Aligned_cols=67 Identities=28% Similarity=0.487 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhccchhhhhhhhhhhhhhhhcCCCCCChhHHHHHHHhcCCcc--cc-----cchhhHH
Q 009928 278 NIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENA--RT-----CHDGLYR 350 (522)
Q Consensus 278 DVd~V~Riv~~Fl~~~~~~~~~~~~~~l~kVakLvD~YLaEiA~D~nL~~skF~~LAe~lP~~A--R~-----~~DgLYR 350 (522)
+.+.+.-|+++|-. +-+ +|.|=.+..+|..+.+..|..+++.+|.++ .. .+=|++.
T Consensus 260 ~~e~m~~Lv~~F~p----------------~l~-f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~ 322 (802)
T PF13764_consen 260 NEEKMDALVEHFKP----------------YLD-FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQ 322 (802)
T ss_pred CHHHHHHHHHHHHH----------------hcC-hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHH
Confidence 45667777777732 111 555655677788899999999999999887 22 3345666
Q ss_pred -HHHHHHh-hCCCC
Q 009928 351 -AIDTYLK-SHPSL 362 (522)
Q Consensus 351 -AIDiYLK-aHp~l 362 (522)
|++ ||. .+|..
T Consensus 323 ~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 323 DAID-YLLKHFPSL 335 (802)
T ss_pred HHHH-HHHHhCccc
Confidence 888 555 55654
No 54
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.44 E-value=2.2e+02 Score=25.25 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=19.7
Q ss_pred chHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009928 434 TSIEIKNLREELENVKTRMAELQKDYSELQREYE 467 (522)
Q Consensus 434 ~~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~ 467 (522)
...+...|+.+|.+|+-++.+|+.....+.++.+
T Consensus 63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655555444
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.25 E-value=1.6e+02 Score=27.74 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=13.5
Q ss_pred HHHHHHHHhhCCCCCHHhh
Q 009928 349 YRAIDTYLKSHPSLSEHDR 367 (522)
Q Consensus 349 YRAIDiYLKaHp~lse~Er 367 (522)
|-|.||+.--|..+++.--
T Consensus 17 ys~~di~~nL~~~~~K~~v 35 (169)
T PF07106_consen 17 YSAQDIFDNLHNKVGKTAV 35 (169)
T ss_pred CcHHHHHHHHHhhccHHHH
Confidence 6778888877777776443
Done!