Query 009928
Match_columns 522
No_of_seqs 194 out of 379
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 16:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1buoa_ d.42.1.1 (A:) Promyelo 98.4 2E-07 1.4E-11 80.1 6.2 72 2-86 49-120 (121)
2 d1r29a_ d.42.1.1 (A:) B-cell l 98.4 2.1E-07 1.6E-11 79.4 6.1 76 2-85 46-121 (122)
3 d1hv2a_ d.42.1.1 (A:) Elongin 80.2 1.1 7.9E-05 35.8 5.1 61 3-66 25-99 (99)
4 d2c9wc1 d.42.1.1 (C:17-112) El 47.6 7.5 0.00054 30.4 3.8 61 3-65 22-95 (96)
5 d1e09a_ d.129.3.1 (A:) Major t 42.1 5.4 0.0004 34.2 2.3 37 318-362 121-157 (159)
6 d1fm4a_ d.129.3.1 (A:) Major t 38.7 6.7 0.00049 33.6 2.3 18 345-362 140-157 (159)
7 d1icxa_ d.129.3.1 (A:) Plant p 34.5 8.2 0.0006 33.0 2.2 19 343-361 136-154 (155)
8 d1xdfa1 d.129.3.1 (A:1-157) Pl 30.1 7.5 0.00055 33.4 1.1 36 318-361 120-155 (157)
9 d2c2la2 g.44.1.2 (A:225-304) S 25.6 14 0.001 27.4 1.9 18 346-363 61-78 (80)
10 d2pvba_ a.39.1.4 (A:) Parvalbu 23.6 1.1E+02 0.0082 23.3 7.3 71 312-386 10-83 (107)
11 d1uuja_ a.221.1.1 (A:) Lissenc 21.6 22 0.0016 27.2 2.2 19 445-463 57-75 (76)
12 d1nkpa_ a.38.1.1 (A:) Myc prot 20.4 77 0.0056 23.7 5.4 35 435-469 51-85 (88)
No 1
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.36 E-value=2e-07 Score=80.05 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=64.0
Q ss_pred ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHHHHHH
Q 009928 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (522)
Q Consensus 2 Sksg~l~rl~~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~ktE~ 81 (522)
++|+|++.++.+. ..++.+++++ |++|+.+.+|+|.+++++++.||..+..||++|+|.+ |...++.
T Consensus 49 a~S~~F~~lf~~~-----~~~i~~~~v~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~~ 115 (121)
T d1buoa_ 49 CTSKMFEILFHRN-----SQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLK 115 (121)
T ss_dssp HHCHHHHHHTTSC-----CSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHH
T ss_pred ccChhhhhhccCc-----cceeecCCCC--HHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHHH
Confidence 5799999999642 3478898876 8999999999999999999999999999999999986 9999999
Q ss_pred Hhhhh
Q 009928 82 FLTLV 86 (522)
Q Consensus 82 fL~~v 86 (522)
||..+
T Consensus 116 ~L~~i 120 (121)
T d1buoa_ 116 MLETI 120 (121)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99764
No 2
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.36 E-value=2.1e-07 Score=79.35 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=61.2
Q ss_pred ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHHHHHH
Q 009928 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (522)
Q Consensus 2 Sksg~l~rl~~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~ktE~ 81 (522)
++|+||+.++...........+.+.++ .|++|+.+.+|+|+++++++..||..+.+||+||+|.+ |+..++.
T Consensus 46 ~~S~~F~~~f~~~~~e~~~~~~~~~~v--~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~ 117 (122)
T d1r29a_ 46 ACSGLFYSIFTDQLKRNLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTCRK 117 (122)
T ss_dssp HHCHHHHHHHTSTTTTTCSEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred hCCHHHHHHhccchhhhcceeeeeccc--CHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHH------HHHHHHH
Confidence 479999999975433212222333444 57999999999999999999999999999999999986 9999999
Q ss_pred Hhhh
Q 009928 82 FLTL 85 (522)
Q Consensus 82 fL~~ 85 (522)
||..
T Consensus 118 ~L~~ 121 (122)
T d1r29a_ 118 FIKA 121 (122)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 3
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=80.18 E-value=1.1 Score=35.77 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=46.0
Q ss_pred cccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHHhhc--------C------CccccCcchhhHHHhhHHhhcC
Q 009928 3 KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCY--------G------LPIAFNPNNIAPLRCASEFLDM 66 (522)
Q Consensus 3 ksg~l~rl~~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCY--------G------~~i~it~~NVa~LrCAAeyLeM 66 (522)
.||.|+.++...... ....|.|++++ +.+++++..||+ + -.+++.+....-|-.||.||++
T Consensus 25 ~S~tI~~ml~~~~~e-~~~~Ipl~~V~--s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd~~~l~eLi~AAnyLdI 99 (99)
T d1hv2a_ 25 ISPTLKAMIEGPFRE-SKGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp TCHHHHHHHHSSTTT-CTTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHHccCCC-CcCccccCCCC--hHHHHHHHHHHHHhhhCcCcccccccCCCCCCCHHHHHHHHHHHhhhCC
Confidence 589999999865432 34468888876 589999999997 1 1356666667778899999975
No 4
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.60 E-value=7.5 Score=30.45 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=36.3
Q ss_pred cccHHHHHhcCCCCC--CCccceEecCCCCChHHHHHHHHhhc-----C-C-----ccccCcchhhHHHhhHHhhc
Q 009928 3 KCGYIARLELQPSIS--NLGYDLKLENFPGGSETFEIILKFCY-----G-L-----PIAFNPNNIAPLRCASEFLD 65 (522)
Q Consensus 3 ksg~l~rl~~~~~~~--~~~~~i~L~dfPGGaeaFEl~akFCY-----G-~-----~i~it~~NVa~LrCAAeyLe 65 (522)
-||.|++++...... +....|.|+++. +.+++++..||+ . . .++|.+.-.--|--||.||+
T Consensus 22 ~S~tI~~ml~~~~~~~e~~~~~IpL~nV~--s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~~l~eLi~AAnyLd 95 (96)
T d2c9wc1 22 TSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 95 (96)
T ss_dssp TSHHHHHC------------CEEECTTCC--HHHHHHHHHHHHHHHHTC----CCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHhccCccccCCCCeeECCCCC--HHHHHHHHHHHHhhccCcCCcCCCCCCcCCHHHHHHHHHHHhhhc
Confidence 489999999764321 133468888876 589999999995 1 1 23344444445777888875
No 5
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}
Probab=42.12 E-value=5.4 Score=34.25 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=26.6
Q ss_pred hhcCCCCCChhHHHHHHHhcCCcccccchhhHHHHHHHHhhCCCC
Q 009928 318 EVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSL 362 (522)
Q Consensus 318 EiA~D~nL~~skF~~LAe~lP~~AR~~~DgLYRAIDiYLKaHp~l 362 (522)
|-..|..+++.+.....+. .-++++|||-||.+||..
T Consensus 121 e~~~~~~~~~e~~~~~~e~--------~~~~~K~iEayLlanp~~ 157 (159)
T d1e09a_ 121 HTKGNVEIKEEHVKAGKEK--------ASNLFKLIETYLKGHPDA 157 (159)
T ss_dssp EECSSCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHCTTS
T ss_pred EECCCCCCCHHHHHHHHHH--------HHHHHHHHHHHHhhChhh
Confidence 5556667777776554332 347999999999999973
No 6
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}
Probab=38.69 E-value=6.7 Score=33.58 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.9
Q ss_pred chhhHHHHHHHHhhCCCC
Q 009928 345 HDGLYRAIDTYLKSHPSL 362 (522)
Q Consensus 345 ~DgLYRAIDiYLKaHp~l 362 (522)
..++++||+-||-+||..
T Consensus 140 ~~~~~K~iE~YLlanp~~ 157 (159)
T d1fm4a_ 140 GETLLRAVESYLLAHSDA 157 (159)
T ss_dssp HHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhhChhh
Confidence 468999999999999973
No 7
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}
Probab=34.47 E-value=8.2 Score=33.05 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=16.4
Q ss_pred ccchhhHHHHHHHHhhCCC
Q 009928 343 TCHDGLYRAIDTYLKSHPS 361 (522)
Q Consensus 343 ~~~DgLYRAIDiYLKaHp~ 361 (522)
..--|+++||+-||-|||.
T Consensus 136 e~~~~~fK~iE~YLlanPd 154 (155)
T d1icxa_ 136 FKGLGLFKAIEGYVLAHPD 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhCcC
Confidence 3456899999999999995
No 8
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}
Probab=30.09 E-value=7.5 Score=33.42 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.7
Q ss_pred hhcCCCCCChhHHHHHHHhcCCcccccchhhHHHHHHHHhhCCC
Q 009928 318 EVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPS 361 (522)
Q Consensus 318 EiA~D~nL~~skF~~LAe~lP~~AR~~~DgLYRAIDiYLKaHp~ 361 (522)
|-..|..+++.+.....+ ...++|+||+-||-+||.
T Consensus 120 e~~~~~~~~~e~ik~~~e--------~~~~~~K~iEaYLlanpd 155 (157)
T d1xdfa1 120 ETKGDAQPNEEEGKAAKA--------RGDAFFKAIENYLSAHPE 155 (157)
T ss_dssp EESSSSCCCHHHHHHHHH--------HHHTTTHHHHHHHHTSGG
T ss_pred EECCCCCCCHHHHHHHHH--------HHHHHHHHHHHHHhhCCC
Confidence 556677778887766544 247899999999999994
No 9
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.61 E-value=14 Score=27.38 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHhhCCCCC
Q 009928 346 DGLYRAIDTYLKSHPSLS 363 (522)
Q Consensus 346 DgLYRAIDiYLKaHp~ls 363 (522)
..|..+|+-||+.||+.-
T Consensus 61 ~~L~~~I~~~l~~~~~~~ 78 (80)
T d2c2la2 61 LAMKEVIDAFISENGWVE 78 (80)
T ss_dssp HHHHHHHHHHHTTCSCSS
T ss_pred HHHHHHHHHHHHHCCCcC
Confidence 568999999999999874
No 10
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}
Probab=23.61 E-value=1.1e+02 Score=23.30 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=53.9
Q ss_pred hhhhhhhhcCCCCCChhHHHHHHHhcCCcccccchhhHHHHHHHHhhCCC-CCHHhhhhhhcccc--cCCCCHHHhHH
Q 009928 312 LDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPS-LSEHDRRRLCKLMN--CEKLSLDACTH 386 (522)
Q Consensus 312 vD~YLaEiA~D~nL~~skF~~LAe~lP~~AR~~~DgLYRAIDiYLKaHp~-lse~Er~~lCr~md--c~KLS~EAc~H 386 (522)
|+.++.++..|..+...+|...... .....|-|..|-+.|=+.+.+ |+..|-+.+++-+. ..++|.+-+.+
T Consensus 10 i~~~~~~~~~~gsi~~~eF~~~~~l----~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~~~~~~ 83 (107)
T d2pvba_ 10 VAAALAACSAADSFKHKEFFAKVGL----ASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKA 83 (107)
T ss_dssp HHHHHHHTCSTTCCCHHHHHHHHTG----GGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHH
T ss_pred HHHHHHhccCCCCcCHHHHHHHHhc----ccCCHHHHHHHHHhhccCCCCcCcHHHHHHHHHHhhcccccCCHHHHHH
Confidence 6677888888899999999887653 234567799999999888885 89999888877663 45777764443
No 11
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.61 E-value=22 Score=27.19 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009928 445 LENVKTRMAELQKDYSELQ 463 (522)
Q Consensus 445 l~~mr~rv~eLe~~c~~m~ 463 (522)
+-|++.+|+|||..|..+|
T Consensus 57 ViRLQkKImdLE~~~~~lq 75 (76)
T d1uuja_ 57 VIRLQKKVMELESKLNEAK 75 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7789999999999998765
No 12
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.37 E-value=77 Score=23.66 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=27.0
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009928 435 SIEIKNLREELENVKTRMAELQKDYSELQREYEKL 469 (522)
Q Consensus 435 ~~E~~~lk~el~~mr~rv~eLe~~c~~m~~~~~k~ 469 (522)
..-++.|+.+++.+...+.+|+++...+++++..+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44577788888888888888888888888887765
Done!