Your job contains 1 sequence.
>009931
MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA
ERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR
AVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR
GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSG
GNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPVSAPG
GGSASGYSAGSMGYGSGDGNYGLGGGGFGRTSSAGVGPTSSFAGSTSGYEGSYGDSYRSG
SGYGDPTWRSATPELDGSGSFSYGLGTVSTNVAAKSSEGFIGSYNVTSRQSTRGTTIFTF
LIWYCFVRAIRDSAFLSAFTLWRENLDFFFFESVRFPYGEKI
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009931
(522 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 1208 3.2e-136 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 993 1.3e-109 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 981 2.8e-105 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 712 1.4e-72 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 692 3.5e-68 1
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 470 1.8e-48 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 470 7.7e-48 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 470 1.6e-47 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 496 2.0e-47 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 488 1.4e-46 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 488 1.4e-46 1
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 486 2.3e-46 1
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 464 2.9e-46 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 464 2.9e-46 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 460 3.7e-46 2
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 448 6.0e-46 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 458 1.2e-45 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 479 1.3e-45 1
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 456 2.6e-45 2
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 475 3.4e-45 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 475 3.4e-45 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 473 5.6e-45 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 445 8.6e-45 2
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 450 1.1e-44 2
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 470 1.2e-44 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 439 2.3e-44 2
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 441 2.9e-44 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 441 2.9e-44 2
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 466 3.1e-44 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 466 3.1e-44 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 439 4.7e-44 2
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 439 4.7e-44 2
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 460 1.3e-43 1
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 433 2.0e-43 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 457 2.8e-43 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 456 3.5e-43 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 456 3.5e-43 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 456 3.5e-43 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 456 3.5e-43 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 426 2.2e-42 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 445 5.2e-42 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 444 6.6e-42 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 443 8.4e-42 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 443 8.4e-42 1
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 441 1.4e-41 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 440 1.7e-41 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 438 2.8e-41 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 438 2.8e-41 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 433 9.6e-41 1
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 432 1.2e-40 1
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 432 1.2e-40 1
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 432 1.2e-40 1
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 432 1.2e-40 1
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 432 1.2e-40 1
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 431 1.6e-40 1
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 431 1.6e-40 1
UNIPROTKB|E9PSU5 - symbol:E9PSU5 "Uncharacterized protein... 429 2.6e-40 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 428 3.3e-40 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 427 4.2e-40 1
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 426 5.3e-40 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 425 6.8e-40 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 425 6.8e-40 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 425 6.8e-40 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 425 6.8e-40 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 425 6.8e-40 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 425 6.8e-40 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 425 6.8e-40 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 425 6.8e-40 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 425 6.8e-40 1
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 424 8.7e-40 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 423 1.1e-39 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 422 1.4e-39 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 421 1.8e-39 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 419 2.9e-39 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 418 3.7e-39 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 416 6.1e-39 1
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 387 1.3e-38 2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 412 1.6e-38 1
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 410 2.6e-38 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 409 3.4e-38 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 383 3.5e-38 2
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 408 4.3e-38 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 406 7.0e-38 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 406 7.0e-38 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 407 1.3e-37 1
UNIPROTKB|F1PGQ0 - symbol:F1PGQ0 "Uncharacterized protein... 403 1.5e-37 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 380 1.5e-37 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 402 1.9e-37 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 399 3.9e-37 1
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 399 3.9e-37 1
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 376 4.0e-37 2
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 362 5.1e-37 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 396 8.0e-37 1
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 396 8.0e-37 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 394 1.3e-36 1
UNIPROTKB|Q13151 - symbol:HNRNPA0 "Heterogeneous nuclear ... 394 1.3e-36 1
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein... 392 2.1e-36 1
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 390 3.5e-36 1
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 390 3.5e-36 1
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 388 5.7e-36 1
WARNING: Descriptions of 1224 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 1208 (430.3 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
Identities = 242/364 (66%), Positives = 285/364 (78%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
M+SD GKLFIGGISWDT+EERLKEYFS +GEV+EAVI++DR TGRARGFGFVVFADPAVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 ERVIMDKHMIDGRTVEAKKAVPRDDQNMLNR-NTSSIHSSPG-PGRTKKIFVGGLASTVT 118
E VI +KH IDGR VEAKKAVPRDDQNM+NR N+SSI SPG PGRT+KIFVGGL S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
ESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFITYDSEEAV++VL KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 179 KRAVPKEFSPGPSRSSM-IGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLA 237
KRAVPKE SPGPSRS + GY+ +G NR NLLN +AQ +N + GG+G+RMD RFSP+
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYS-YGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVG 239
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG 297
GR G + + +GYG+ +N D GL + G +N++ ++ YGR + P+ GN+NRF VG
Sbjct: 240 AGRSGFANYS-SGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVG 298
Query: 298 FSGGNGRGDS-VLSSTTWNVWGN-GSLN---SATNPASPGAFLGSGSGNFEVS--FGNNS 350
+ GGNG G+S SS T N+WGN G LN + TN S GS SGN +S FGN+
Sbjct: 299 YEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSG 358
Query: 351 VNWG 354
VNWG
Sbjct: 359 VNWG 362
Score = 147 (56.8 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 425 DPTWRSATPELDGSGSFSYGLG--TVSTNVAAKSSE-GFIGSYNVTSRQSTRG 474
DPTWRS TPE +G FSYG+G S++V+A+SS G++GSY+V RQ RG
Sbjct: 439 DPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRG 491
Score = 85 (35.0 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 46/172 (26%), Positives = 70/172 (40%)
Query: 173 GKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSR 232
G V + +P F+ G + + + Y G + P + N+ + GG G S
Sbjct: 253 GMNVNFDQGLPTGFTGGTNYNGNVDYGR-GMS-PYYIGNTNRFGPAVGYEGGNGGGNSSF 310
Query: 233 FSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG--YGR--MLGPFPGGN 288
FS + G + GG Y N + + GGSS+ +N+L +G + PGG
Sbjct: 311 FSSVTRNLWGNN--GGLNYN-NNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVNWGAPGGG 367
Query: 289 SNRFSTP-VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGS 339
+N S V F G G G+S T G + N N A+P + S S
Sbjct: 368 NNAVSNENVKFGYG-GNGESGFGLGTG---GYAARNPGANKAAPSSSFSSAS 415
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 993 (354.6 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 218/367 (59%), Positives = 262/367 (71%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
SDLGKLFIGGISWDTDEERL+EYF +YG++VEAVIMRDR TGRARGFGF+VFADP+VAER
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 63 VIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHS-SPGPG------RTKKIFVGGLAS 115
VIMDKH+IDGRTVEAKKAVPRDDQ +L R+ S +H SP G RTKKIFVGGL S
Sbjct: 72 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKM 175
++TE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DSEE+VD VLHKTFHELNGKM
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191
Query: 176 VEVKRAVPKEFSPG-PSRSSMIGY-NNFGF--NRPT--NLLNSFAQRYNLSPAGGFGVRM 229
VEVKRAVPKE S P+RS +IGY NN+G NR + + NSF YN + G G
Sbjct: 192 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSAG--- 248
Query: 230 DSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGP--FPGG 287
RFSP+ +GR S FG +G+N + L+ ++ G N+LGY R+ G F
Sbjct: 249 --RFSPIGSGRNAFSSFG-----LGLNQELNLNSNFDG-----NTLGYSRIPGNQYFNSA 296
Query: 288 NSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFG 347
+ NR+++P+G++ RGDS + + ++WGN S +S PG LG VS G
Sbjct: 297 SPNRYNSPIGYN----RGDSAYNPSNRDLWGNRSDSSG-----PGWNLG-------VSVG 340
Query: 348 NNSVNWG 354
NN NWG
Sbjct: 341 NNRGNWG 347
Score = 525 (189.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 137/278 (49%), Positives = 167/278 (60%)
Query: 94 SSIHSSPGPG-RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI 152
S H G G RTKKIFVGGL S++TE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFI
Sbjct: 109 SPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 168
Query: 153 TYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPG-PSRSSMIGY-NNFGF--NRPT- 207
T+DSEE+VD VLHKTFHELNGKMVEVKRAVPKE S P+RS +IGY NN+G NR +
Sbjct: 169 TFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSA 228
Query: 208 -NLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG-GAGYGVGMN--LDG---G 260
+ NSF YN + G G RFSP+ +GR S FG G + +N DG G
Sbjct: 229 NSYFNSFPPGYNNNNLGSAG-----RFSPIGSGRNAFSSFGLGLNQELNLNSNFDGNTLG 283
Query: 261 LS--PS--YGGSSN---FSNSLGYGRMLGPFPGGNSNRFSTPVGFSG-GNGRGDSVLSST 312
S P Y S++ +++ +GY R + N + + SG G G SV +
Sbjct: 284 YSRIPGNQYFNSASPNRYNSPIGYNRGDSAYNPSNRDLWGNRSDSSGPGWNLGVSV-GNN 342
Query: 313 TWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNS 350
N WG S+ S N G G+GSG +SF N+
Sbjct: 343 RGN-WGLSSVVSDNN--GYGRSYGAGSGLSGLSFAGNT 377
Score = 121 (47.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 45/124 (36%), Positives = 63/124 (50%)
Query: 199 NNFGFNR-PTN-LLNSFA-QRYNLSPAGGFGVRMDSRFSPLATGR-GGISPFGGAGYGVG 254
N G++R P N NS + RYN SP G + R DS ++P G S G G+ +G
Sbjct: 280 NTLGYSRIPGNQYFNSASPNRYN-SPIG-YN-RGDSAYNPSNRDLWGNRSDSSGPGWNLG 336
Query: 255 MNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPV-GFSGGNG---RGDSVLS 310
+++ G ++G SS S++ GYGR G G + F+ GF G G RG SV S
Sbjct: 337 VSV-GNNRGNWGLSSVVSDNNGYGRSYGAGSGLSGLSFAGNTNGFDGSIGELYRGSSVYS 395
Query: 311 STTW 314
+TW
Sbjct: 396 DSTW 399
Score = 110 (43.8 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 425 DPTWRSATP------ELDG-SGSFSYGLGTVSTNVAAKSSEGFIGSYNVTSRQSTRG 474
D TW+ + P ELDG S S+ +G+ V ++ +A +SEG+ G+YNV +RQ+ RG
Sbjct: 396 DSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYSGNYNVGNRQTHRG 452
Score = 77 (32.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 52/171 (30%), Positives = 74/171 (43%)
Query: 190 PSRSSMIGY-NNF--GFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI-SP 245
P+RSS Y N+F G+N N L S A R+ SP G G S F + S
Sbjct: 223 PNRSSANSYFNSFPPGYNN--NNLGS-AGRF--SPIGS-GRNAFSSFGLGLNQELNLNSN 276
Query: 246 FGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPF-PG-----GNSNRFSTP---V 296
F G G + G + + +++ +GY R + P GN + S P +
Sbjct: 277 FDGNTLGYS-RIPGNQYFNSASPNRYNSPIGYNRGDSAYNPSNRDLWGNRSDSSGPGWNL 335
Query: 297 GFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFG 347
G S GN RG+ LSS + G G A + S +F G+ +G F+ S G
Sbjct: 336 GVSVGNNRGNWGLSSVVSDNNGYGRSYGAGSGLSGLSFAGNTNG-FDGSIG 385
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 981 (350.4 bits), Expect = 2.8e-105, Sum P(2) = 2.8e-105
Identities = 221/370 (59%), Positives = 261/370 (70%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
MESDLGKLFIGGISWDTDEERL++YFS YG+VVEAVIMRDRATGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 ERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIH-SSP---GPGRTKKIFVGGLAST 116
ERVIMDKH+IDGRTVEAKKAVPRDDQ +L R+ S IH SP G GRTKKIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMV 176
+TE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVDRVLHKTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKEFSPGPS-RSSMIGYNNFG--FNR-PTN-LLNSFAQR---YN-LSPAGGFGV 227
EVKRAVPKE SP + RS + N+G NR P N N+FA YN L P G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVG---- 236
Query: 228 RMDSRFSP-LATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRM-LGP-F 284
RFSP + +GR +S FG G+ +L L+PS G+S+ + GY R+ P F
Sbjct: 237 ---RRFSPVIGSGRNAVSAFG---LGLNHDLSLNLNPSCDGTSS---TFGYNRIPSNPYF 287
Query: 285 PGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEV 344
G + NR+++P+G + R +S +S ++WGN T+ A PG N V
Sbjct: 288 NGASPNRYTSPIG----HNRTESPYNSNNRDLWGN-----RTDTAGPG-------WNLNV 331
Query: 345 SFGNNSVNWG 354
S GNN NWG
Sbjct: 332 SNGNNRGNWG 341
Score = 91 (37.1 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 41/125 (32%), Positives = 58/125 (46%)
Query: 199 NNFGFNR-PTN-LLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMN 256
+ FG+NR P+N N + SP G R +S ++ G + AG G +N
Sbjct: 274 STFGYNRIPSNPYFNGASPNRYTSPIGHN--RTESPYNSNNRDLWG-NRTDTAGPGWNLN 330
Query: 257 LDGGLSPSYGG---SSNFSN-SLGYGRMLGPFPGGNSNRFSTPVGFSGGNG---RGDSVL 309
+ G + G SS SN + G+GR G G +S+ F+ GF G G RG SV
Sbjct: 331 VSNGNNRGNWGLPSSSAVSNDNNGFGRNYGTSSGLSSSPFN---GFEGSIGELYRGGSVY 387
Query: 310 SSTTW 314
S +TW
Sbjct: 388 SDSTW 392
Score = 81 (33.6 bits), Expect = 2.8e-105, Sum P(2) = 2.8e-105
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 425 DPTWRS------ATPELDG-SGSFSYGLGTVSTNVAAKSSEGFIGSYNVTSRQSTRG 474
D TW+ ++ ELD S ++ Y + V ++ +A E + GSYNV +RQ+ RG
Sbjct: 389 DSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRG 445
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 712 (255.7 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 166/367 (45%), Positives = 215/367 (58%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
MESD GKLFIGGISWDTDE L+EYFS +GEV++ +MR++ATGR RGFGFV F+DPAV
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 ERVIMDKHMIDGRTVEAKKAVPRDDQNMLNR----NTSSIHSSPGPGRTKKIFVGGLAST 116
+RV+ DKH ID R V+ K+A+ R++Q+ R N S S RTKKIFVGGL
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMV 176
+T +F+ YF+ +G ++D V+M D TQRPRGFGF+++DSE++VD VLHKTFH+LNGK V
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 177 EVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDS-RF-S 234
EVKRA+PK+ +PG + G G F Y S G+ R+DS R+
Sbjct: 181 EVKRALPKDANPGIASGGGRGSGGAG---------GFPG-YGGSGGSGYEGRVDSNRYMQ 230
Query: 235 PLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG--YGRMLGPFPG-GNSNR 291
P TG G P+GG+GYG G G YGG + N G YG P G G+ R
Sbjct: 231 PQNTG-SGYPPYGGSGYGTGYGY-GSNGVGYGGFGGYGNPAGAPYGNPSVPGAGFGSGPR 288
Query: 292 FS----TPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFG 347
S P G+ G G G++ W G+G SA GA G GS + +G
Sbjct: 289 SSWGAQAPSGY-GNVGYGNAA----PWG--GSGGPGSAVM-GQAGASAGYGSQGY--GYG 338
Query: 348 NNSVNWG 354
N ++G
Sbjct: 339 GNDSSYG 345
Score = 40 (19.1 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIG 462
G GS YG G ++ S+ G +G
Sbjct: 329 GYGSQGYGYGGNDSSYGTPSAYGAVG 354
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 159/363 (43%), Positives = 223/363 (61%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
M+SD GKLF+GGISW+TDE++L+E+F+ YGEV +A++MRD+ TGR RGFGFV+F+DP+V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 ERVIMDKHMIDGRTVEAKKAVPRDDQNMLNR--NTSSIHSSPGPG--RTKKIFVGGLAST 116
+RV+ +KH ID R V+ K+A+ R++Q + R N ++ SS G +TKKIFVGGL T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMV 176
+T+ +F++YF+ +G +TDV +MYD T RPRGFGF+++DSE+AVD VLHKTFH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 177 EVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDS-RFSP 235
EVKRA+PK+ +PG SM G + G+ Q Y + + G RMDS RF
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSGGY-----------QGYGGNESSYDG-RMDSNRFLQ 228
Query: 236 LATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG-YGRMLGPFPG-GNSNRFS 293
+ G+ +G +GYG G +G YG ++ S G YG G G G +N
Sbjct: 229 HQSVGNGLPSYGSSGYGAGYG-NGSNGAGYGAYGGYTGSAGGYGA--GATAGYGATNIPG 285
Query: 294 TPVGFSGG---NGRGDSVLSSTTWNV-WGNGSLNSATN-P-ASPGAFLGSGSGNFEVSFG 347
G S G D+ SS N +G+G+ +S P A+P SG N +G
Sbjct: 286 AGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYG 345
Query: 348 NNS 350
S
Sbjct: 346 GYS 348
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 470 (170.5 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 100/253 (39%), Positives = 148/253 (58%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
A P++ S P + G + +G N N +A + + G+G + + P
Sbjct: 188 AEPRDSKSQAPGQP---GASQWGSRVVPNAANGWAGQPPPTWQQGYGPQ--GMWVPAGQA 242
Query: 240 RGGISPFGGAGYG 252
GG P AG G
Sbjct: 243 IGGYGP-PPAGRG 254
Score = 174 (66.3 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQN 87
V M H I G+ VE K+A PRD ++
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKS 195
Score = 168 (64.2 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 32/95 (33%), Positives = 50/95 (52%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
++ G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 158 EAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSR 192
V VL H L+G+ ++ K P+ P +R
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTR 96
Score = 53 (23.7 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 235 PLATGRGGISPFGGAGYGVGMN 256
P G GG P GG+G+G G N
Sbjct: 376 PSVPGSGG-PPAGGSGFGRGQN 396
Score = 47 (21.6 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 249 AGYGVGMNLDGGLSPSYGGSS 269
AG+G G + PSYGG S
Sbjct: 357 AGFGQGFSDPSQQPPSYGGPS 377
Score = 42 (19.8 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 271 FSNSLGYGRMLGPFPGGNSNRFSTPVGFSG 300
+S GYG+ L F G S+ P + G
Sbjct: 346 YSQYAGYGQDLAGFGQGFSDPSQQPPSYGG 375
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 470 (170.5 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 100/253 (39%), Positives = 148/253 (58%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
A P++ S P + G + +G N N +A + + G+G + + P
Sbjct: 188 AEPRDSKSQAPGQP---GASQWGSRVVPNAANGWAGQPPPTWQQGYGPQ--GMWVPAGQA 242
Query: 240 RGGISPFGGAGYG 252
GG P AG G
Sbjct: 243 IGGYGP-PPAGRG 254
Score = 174 (66.3 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQN 87
V M H I G+ VE K+A PRD ++
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKS 195
Score = 168 (64.2 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 32/95 (33%), Positives = 50/95 (52%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
++ G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 158 EAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSR 192
V VL H L+G+ ++ K P+ P +R
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTR 96
Score = 61 (26.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 180 RAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
+A P + S P+ Y+ +G+ + L F Q ++ P+ + S P G
Sbjct: 329 QAAP-DMSKPPTAQPDFPYSQYGYGQD---LAGFGQGFS-DPSQ----QPPSYGGPSVPG 379
Query: 240 RGGISPFGGAGYGVGMN 256
GG P GG+G+G G N
Sbjct: 380 SGG-PPAGGSGFGRGQN 395
Score = 47 (21.6 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 249 AGYGVGMNLDGGLSPSYGGSS 269
AG+G G + PSYGG S
Sbjct: 356 AGFGQGFSDPSQQPPSYGGPS 376
Score = 38 (18.4 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 276 GYGRMLGPFPGGNSNRFSTPVGFSG 300
GYG+ L F G S+ P + G
Sbjct: 350 GYGQDLAGFGQGFSDPSQQPPSYGG 374
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 470 (170.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 100/253 (39%), Positives = 148/253 (58%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
A P++ S P + G + +G N N +A + + G+G + + P
Sbjct: 188 AEPRDSKSQAPGQP---GASQWGSRVVPNAANGWAGQPPPTWQQGYGPQ--GMWVPAGQA 242
Query: 240 RGGISPFGGAGYG 252
GG P AG G
Sbjct: 243 IGGYGP-PPAGRG 254
Score = 174 (66.3 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQN 87
V M H I G+ VE K+A PRD ++
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKS 195
Score = 168 (64.2 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 32/95 (33%), Positives = 50/95 (52%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
++ G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 158 EAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSR 192
V VL H L+G+ ++ K P+ P +R
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTR 96
Score = 54 (24.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 180 RAVPKEFSPGPSRSSMIGYNNF-GFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
+A P + S P+ Y + G+ + L+ F Q ++ P+ + S P
Sbjct: 329 QAAP-DMSKPPTAQPDFPYGQYAGYGQD---LSGFGQGFS-DPSQ----QPPSYGGPSVP 379
Query: 239 GRGGISPFGGAGYGVGMN 256
G GG P GG+G+G G N
Sbjct: 380 GSGG-PPAGGSGFGRGQN 396
Score = 44 (20.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 249 AGYGVGMNLDGGLSPSYGGSS 269
+G+G G + PSYGG S
Sbjct: 357 SGFGQGFSDPSQQPPSYGGPS 377
Score = 38 (18.4 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 276 GYGRMLGPFPGGNSNRFSTPVGFSG 300
GYG+ L F G S+ P + G
Sbjct: 351 GYGQDLSGFGQGFSDPSQQPPSYGG 375
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 120/311 (38%), Positives = 168/311 (54%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
S GKLF+GG+SW+T E YF ++GEVV++VIM DR TG RGFGFV FAD AVAE+
Sbjct: 63 SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122
Query: 63 VIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDF 122
V+ + H+ID R V+ K+ +PR D++ + S +T+KIFVGGL + E +
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVS---------KTRKIFVGGLPPLLEEDEL 173
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK-TFHELNGKMVEVKRA 181
K YF +G I + +MYDH+T R RGFGF+T+ +E++VDR+ HEL K VE+KRA
Sbjct: 174 KNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRA 233
Query: 182 VPKEFSPGPSRSSMIGYNNFG-FNRPTNLLNSFAQRYNL-SPAGGFGVRMDSRFSPLATG 239
PK G +S Y G +++ + + Y++ S GG+G + A G
Sbjct: 234 EPKR--TGRD-NSFRSYGASGKYDQEDSYSGKANEDYSMYSGYGGYG-----GYGAYA-G 284
Query: 240 RGGISPFG----GAGYGVGMNLDGGL-SPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFST 294
++P G G GYG G G + + YG GYG GG + +
Sbjct: 285 NSMVNPAGFYGYGGGYGYGYGYGGQMFNMGYGAGGYSHMGSGYGVAAAAAYGGGKSHGNG 344
Query: 295 PVGFSGGNGRG 305
G S G G G
Sbjct: 345 NNGSSSGKGNG 355
Score = 181 (68.8 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 37/95 (38%), Positives = 58/95 (61%)
Query: 90 NRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF 149
+R++SS SSPG K+FVGG++ T F YF +FG + D V+M D T PRGF
Sbjct: 55 HRHSSSSMSSPG-----KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGF 109
Query: 150 GFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
GF+T+ ++VL + H ++ + V++KR +P+
Sbjct: 110 GFVTFADSAVAEKVLEED-HVIDDRKVDLKRTLPR 143
Score = 66 (28.3 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 24/90 (26%), Positives = 34/90 (37%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGG-------A 249
GY +G +++N A Y G+G + + G GG S G A
Sbjct: 275 GYGGYGAYAGNSMVNP-AGFYGYGGGYGYGYGYGGQMFNMGYGAGGYSHMGSGYGVAAAA 333
Query: 250 GYGVGMNLDGGLSPSYGGSSNFSNSLGYGR 279
YG G + G + S G N +N G R
Sbjct: 334 AYGGGKSHGNGNNGSSSGKGNGTNGSGPDR 363
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 131/345 (37%), Positives = 176/345 (51%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SW T + L++YFS++GE+ E ++MRD T R+RGFGFV FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGL-ASTVTE 119
+V+ H +D +T++ K A PR Q + RTKKIFVGGL A+TV E
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVE 124
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V++V FHE+N KMVE K
Sbjct: 125 -DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 180 RAVPKE--FSPGP-SRSSMIGYNNFGFNRPTNLLN--SFAQRYNLSPAGGFGVRMDSRFS 234
+A PKE F PG R+ + Y F +L +F Y G F +F
Sbjct: 184 KAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPG-FAPSYGYQFP 242
Query: 235 PLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFST 294
G P A G + SY NF G P G N R
Sbjct: 243 GFPAAAYG--PVAAAAVAAAR---GSVLNSYSAQPNF------GAPASP-AGSNPAR--- 287
Query: 295 PVGFSGGNGRGDSV-LSSTTWNVWGNGSLNSATNPASPGAFLGSG 338
P GF G N G L G G+ SA +P PG+ G G
Sbjct: 288 PGGFPGANSPGPVADLYGPASQDSGVGNYISAASP-QPGSGFGHG 331
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 118/315 (37%), Positives = 183/315 (58%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D++T ++RGFGFV F DP V
Sbjct: 9 EIGKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTV 68
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTESD 121
+ K H +DGR ++ K PR Q R S ++KKIFVGG+ E++
Sbjct: 69 LDTKPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGEAE 128
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ YF++FG +T+VV++YD QRPRGFGFIT+++E++VD+ ++ FH++ GK VEVK+A
Sbjct: 129 LRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKA 188
Query: 182 VPKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR 240
P++ +P P + +G N +G P ++++ A + PA + + ++TG+
Sbjct: 189 EPRDSKAPAPGQ---LGANQWG---PRAIISA-ANGWAAQPAPTWQQSYGPQGVWVSTGQ 241
Query: 241 GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPF--PGGNSNR-FST-P- 295
P AGYG + G +P+ S F+ L G F P G + FST P
Sbjct: 242 ----PL--AGYGPPLPAGRG-APAQAPSP-FNAFLVAAPPTGGFGAPQGYPQQGFSTQPQ 293
Query: 296 VGFSGGNGRGDSVLS 310
G+S G +GD ++
Sbjct: 294 FGYSFGTPQGDQFVA 308
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 100/199 (50%), Positives = 134/199 (67%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
M+ D KLF+GGI+ +T EE LK+YFSRYG V+EAV+ +++ TG+ RGFGFV FA+
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 ERVIMDKHMIDGRTVEAKKAVPRDD-------QNMLNRNTSSIH------SSPG-PGRTK 106
+ + D H I G+ V+ +KA+ + + L R ++ SS G RTK
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166
KIFVGGL+S TE +FK YF++FG TDVVVM+D T RPRGFGF+TYDSE++V+ V+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 167 TFHELNGKMVEVKRAVPKE 185
FHEL+ K VEVKRA+PKE
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
Score = 181 (68.8 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 37/95 (38%), Positives = 54/95 (56%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GG+S +T EE K YF R+G + V+M D T R RGFGFV + D + V+M
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQ 179
Query: 67 K--HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSS 99
H + + VE K+A+P++ N N +I S
Sbjct: 180 SNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPS 214
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 464 (168.4 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 108/294 (36%), Positives = 155/294 (52%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKEF---SPGPSRSSMIGY-------NNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMD 230
A P++ +PG +S G N + P + + PAG +
Sbjct: 188 AEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAG----QAI 243
Query: 231 SRFSPLATGRGGISPFGGAGYGVGMNLDGGLSP------SYGGSSNFSNSLGYG 278
+ P GRG P + GG P YG FS GYG
Sbjct: 244 GGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFS--FGYG 295
Score = 179 (68.1 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 38/86 (44%), Positives = 52/86 (60%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQN 87
V M H I G+ VE K+A PRD +N
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKN 195
Score = 171 (65.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
+S G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 2 NSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 158 EAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSR 192
V VL H L+G+ ++ K P+ P +R
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTR 96
Score = 63 (27.2 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 180 RAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
+A P + S P+ Y +G+ + L+ F Q ++ P+ + S P G
Sbjct: 329 QAAP-DMSKPPTAQPDFPYGQYGYGQD---LSGFGQGFS-DPSQ----QPPSYGGPSVPG 379
Query: 240 RGGISPFGGAGYGVGMN 256
GG P GG+G+G G N
Sbjct: 380 SGG-PPAGGSGFGRGQN 395
Score = 45 (20.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 245 PFGGAGYGVGMNLDG-GLS------PSYGGSS 269
P+G GYG ++ G G S PSYGG S
Sbjct: 345 PYGQYGYGQDLSGFGQGFSDPSQQPPSYGGPS 376
Score = 38 (18.4 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 276 GYGRMLGPFPGGNSNRFSTPVGFSG 300
GYG+ L F G S+ P + G
Sbjct: 350 GYGQDLSGFGQGFSDPSQQPPSYGG 374
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 464 (168.4 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 108/294 (36%), Positives = 155/294 (52%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKEF---SPGPSRSSMIGY-------NNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMD 230
A P++ +PG +S G N + P + + PAG +
Sbjct: 188 AEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAG----QAI 243
Query: 231 SRFSPLATGRGGISPFGGAGYGVGMNLDGGLSP------SYGGSSNFSNSLGYG 278
+ P GRG P + GG P YG FS GYG
Sbjct: 244 GGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFS--FGYG 295
Score = 179 (68.1 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 38/86 (44%), Positives = 52/86 (60%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQN 87
V M H I G+ VE K+A PRD +N
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKN 195
Score = 171 (65.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
+S G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 2 NSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 158 EAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSR 192
V VL H L+G+ ++ K P+ P +R
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTR 96
Score = 63 (27.2 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 180 RAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
+A P + S P+ Y +G+ + L+ F Q ++ P+ + S P G
Sbjct: 329 QAAP-DMSKPPTAQPDFPYGQYGYGQD---LSGFGQGFS-DPSQ----QPPSYGGPSVPG 379
Query: 240 RGGISPFGGAGYGVGMN 256
GG P GG+G+G G N
Sbjct: 380 SGG-PPAGGSGFGRGQN 395
Score = 45 (20.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 245 PFGGAGYGVGMNLDG-GLS------PSYGGSS 269
P+G GYG ++ G G S PSYGG S
Sbjct: 345 PYGQYGYGQDLSGFGQGFSDPSQQPPSYGGPS 376
Score = 38 (18.4 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 276 GYGRMLGPFPGGNSNRFSTPVGFSG 300
GYG+ L F G S+ P + G
Sbjct: 350 GYGQDLSGFGQGFSDPSQQPPSYGG 374
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 460 (167.0 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 99/250 (39%), Positives = 145/250 (58%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFK 123
+ H +DGR ++ K PR Q R P +K KIFVGG+ E++ +
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 120
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
+YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKRA P
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 184 KEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGG 242
++ S P + G + +G N N +A + + G+G + + P GG
Sbjct: 181 RDSKSQAPGQP---GASQWGSRVVPNAANGWAGQPPPTWQQGYGPQ--GMWVPAGQAIGG 235
Query: 243 ISPFGGAGYG 252
P AG G
Sbjct: 236 YGP-PPAGRG 244
Score = 174 (66.3 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 100 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 159
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQN 87
V M H I G+ VE K+A PRD ++
Sbjct: 160 AVNMHFHDIMGKKVEVKRAEPRDSKS 185
Score = 65 (27.9 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 180 RAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
+A P + S P+ Y+ +G+ + L SF Q ++ P+ + S P G
Sbjct: 319 QAAP-DMSKPPTAQPDFPYSQYGYGQD---LASFGQGFS-DPSQ----QPPSYGGPSVPG 369
Query: 240 RGGISPFGGAGYGVGMN 256
GG P GG+G+G G N
Sbjct: 370 SGG-PPAGGSGFGRGQN 385
Score = 41 (19.5 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 249 AGYGVGMNLDGGLSPSYGGSS 269
A +G G + PSYGG S
Sbjct: 346 ASFGQGFSDPSQQPPSYGGPS 366
Score = 39 (18.8 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 276 GYGRMLGPFPGGNSNRFSTPVGFSG 300
GYG+ L F G S+ P + G
Sbjct: 340 GYGQDLASFGQGFSDPSQQPPSYGG 364
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 448 (162.8 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 92/189 (48%), Positives = 125/189 (66%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SW T +E LK+YF ++GEV E+++MRD T R+RGFGFV F D A ++V+
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 67 -KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q L RTKKIFVGGL+ T D K+Y
Sbjct: 81 TRHELDSKTIDPKVAFPRRAQPKLVT------------RTKKIFVGGLSVNTTIEDVKQY 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
FDQFG + D ++M+D T R RGFGF+T+++E+ V++V FHE+N KMVE K+A PKE
Sbjct: 129 FDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -FSP-GPSR 192
SP G SR
Sbjct: 189 VMSPTGSSR 197
Score = 196 (74.1 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 39/95 (41%), Positives = 59/95 (62%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S++ SS P K+F+GGL+ T+ K YF +FG + + +VM D T+R RGFGF+T
Sbjct: 8 SNLSSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVT 67
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ + VD+VL +T HEL+ K ++ K A P+ P
Sbjct: 68 FVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQP 102
Score = 51 (23.0 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 27/108 (25%), Positives = 46/108 (42%)
Query: 239 GRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTP 295
GR + P+G + G+GM G + +Y G S S + GY FP + R TP
Sbjct: 198 GRARVMPYGMDAFMLGIGMLGYPGFQATTYAGRSYTSLTPGYTYQ---FPEFHLER--TP 252
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSA----TNPASPGAFLGSGS 339
+ + + + + T +N + +A + P+ FLG+ S
Sbjct: 253 L-LTSPHPPELTAIPLTAYNPMAAAAAAAAVVRGSTPSRSAGFLGTSS 299
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 458 (166.3 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 108/296 (36%), Positives = 156/296 (52%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP----GRTKKIFVGGLASTVT 118
+ + H +DGR ++ K PR M T GP ++ KIFVGG+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPR---GMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCG 124
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E++ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEV
Sbjct: 125 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 184
Query: 179 KRAVPKEF---SPGPSRSSMIGY-------NNFGFNRPTNLLNSFAQRYNLSPAGGFGVR 228
KRA P++ +PG +S G N + P + + PAG +
Sbjct: 185 KRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAG----Q 240
Query: 229 MDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSP------SYGGSSNFSNSLGYG 278
+ P GRG P + GG P YG FS GYG
Sbjct: 241 AIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFS--FGYG 294
Score = 179 (68.1 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 38/86 (44%), Positives = 52/86 (60%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 109 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 168
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQN 87
V M H I G+ VE K+A PRD +N
Sbjct: 169 AVNMHFHDIMGKKVEVKRAEPRDSKN 194
Score = 171 (65.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
+S G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 2 NSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 158 EAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSR 192
V VL H L+G+ ++ K P+ P +R
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTR 96
Score = 63 (27.2 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 180 RAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
+A P + S P+ Y +G+ + L+ F Q ++ P+ + S P G
Sbjct: 328 QAAP-DMSKPPTAQPDFPYGQYGYGQD---LSGFGQGFS-DPSQ----QPPSYGGPSVPG 378
Query: 240 RGGISPFGGAGYGVGMN 256
GG P GG+G+G G N
Sbjct: 379 SGG-PPAGGSGFGRGQN 394
Score = 45 (20.9 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 245 PFGGAGYGVGMNLDG-GLS------PSYGGSS 269
P+G GYG ++ G G S PSYGG S
Sbjct: 344 PYGQYGYGQDLSGFGQGFSDPSQQPPSYGGPS 375
Score = 38 (18.4 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 276 GYGRMLGPFPGGNSNRFSTPVGFSG 300
GYG+ L F G S+ P + G
Sbjct: 349 GYGQDLSGFGQGFSDPSQQPPSYGG 373
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 124/353 (35%), Positives = 183/353 (51%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E + GKLF+GG+SW+T +E L YF R+G++++ V+M++ +GR+RGFGFV FADP
Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62
Query: 62 RVIMD-KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
V+ + H +DGRT++ K PR Q P G K+F+GGL S VTE+
Sbjct: 63 HVLQNGPHTLDGRTIDPKPCNPRTLQK------------PKKGGGYKVFLGGLPSNVTET 110
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
D + +F+++G +T+VV+MYD ++ RGFGF++++ E +V+ V ++ + LNGK VE+K+
Sbjct: 111 DLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKK 170
Query: 181 AVPKEFSPGP-SRSSMIG--YNNFGFN----RPTNLLNSFAQRYNLSPAGGFGVRMDSRF 233
A P++ S G S +S +G Y G P + + Q N GG + M
Sbjct: 171 AEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQN-GQMGGPPLNMPIGA 229
Query: 234 SPLATG-RG-GISP----FGGAGYGVGMNLDGGLSPS-YGGSSNFSNSLGYGRMLGPFPG 286
+ G +G G SP +G G G G P G +SN G + G G
Sbjct: 230 PNMMPGYQGWGTSPQQQQYGYGNSGPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGY--G 287
Query: 287 GNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGS 339
G ST G G G S WN W N NSA +PGA G+ +
Sbjct: 288 GYDMYNSTSTGAPSGPSGGGS------WNSW-NMPPNSAGPTGAPGAGAGTAT 333
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 456 (165.6 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 107/290 (36%), Positives = 154/290 (53%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIH--SSPGPGRTKKIFVGGLASTVTESDFK 123
+ H +DGR ++ K PR Q R S ++ KIFVGG+ E++ +
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELR 120
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
+YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKRA P
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 184 KEF---SPGPSRSSMIGY-------NNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRF 233
++ +PGP +S G N + P + + PAG + +
Sbjct: 181 RDSKSQTPGPPGASQWGSRIMPSAANGWAGQPPPTWQQGYGPQGMWVPAG----QAIGGY 236
Query: 234 SPLATGRGGISPFGG-AGYGVGMNLDGGLSPSYGGSSNFSN----SLGYG 278
P GRG P A Y V GG P G + + GYG
Sbjct: 237 GPPPPGRGAPPPPPPFASYIVSTP-PGGFPPPQGFPQGYGTPPPFTFGYG 285
Score = 37 (18.1 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 273 NSLGYGRMLGPFPGGNSNRFSTPVGFSG 300
+ GYG+ L F G S+ P + G
Sbjct: 339 SQFGYGQDLSGFGQGFSDPSQQPPPYGG 366
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 123/345 (35%), Positives = 174/345 (50%)
Query: 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM 65
GK+F+GG++ +T ++F +YGE+ ++VIM+DR TG+ RGFGFV +AD +V ++VI
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
D H+I G+ VE K+ +PR S +TKKIFVGG+ S+V + +FK++
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSM------------SSNDFKTKKIFVGGIPSSVDDDEFKEF 149
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFH-ELNGKMVEVKRAVPK 184
F QFG + + +M DH+T R RGFGF+TY+SE+ VD +L K EL+G VE+K+A PK
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Query: 185 EFSPGPSRSSMIG--YNNFGFNRPTNLLNSFAQRYNLSPAGGF--GVRMDSRFSPLATGR 240
+ + + S G +NFG Y P G + G S G
Sbjct: 210 KPNSVTTPSKRFGDSRSNFGGGYGDGYGGGHGGGYG-GPGGPYKSGGGYGGGRSGGYGGY 268
Query: 241 GG-ISPFGGAGYGVGMN-LDG----GLSPSYGGSSNFSNSLGYGRMLGP-FPGGNSNRFS 293
GG +GG GYG G+ G G S YGG N GY G + GG + +
Sbjct: 269 GGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGGGPGDMYG 328
Query: 294 TPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSG 338
G GG G S + G G A G + G G
Sbjct: 329 GSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGG 373
Score = 220 (82.5 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 43/91 (47%), Positives = 57/91 (62%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S HS G KIFVGGLA T ++F K+F ++G ITD V+M D T +PRGFGF+T
Sbjct: 30 SQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVT 89
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
Y VD+V+ H + GK VE+KR +P+
Sbjct: 90 YADSSVVDKVIQDN-HIIIGKQVEIKRTIPR 119
Score = 101 (40.6 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 39/134 (29%), Positives = 54/134 (40%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPF-GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRML 281
GG+G G GG P+ G GYG G + GG YGG GYG +
Sbjct: 230 GGYGDGYGGGHGGGYGGPGG--PYKSGGGYGGGRS--GGYG-GYGGEFGGYGGGGYGGGV 284
Query: 282 GPFPG----GNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGS 337
GP+ G G S R+ G GG RG + G G + + PG G
Sbjct: 285 GPYRGEPALGYSGRYG---GGGGGYNRGGYSMGGGGGYGGGPGDMYGGSY-GEPGGGYGG 340
Query: 338 GSGNFEVSFGNNSV 351
SG++ +G++ +
Sbjct: 341 PSGSYGGGYGSSGI 354
Score = 95 (38.5 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 39/129 (30%), Positives = 47/129 (36%)
Query: 217 YNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG 276
Y PA G+ R RGG S GG GYG GG YGGS G
Sbjct: 287 YRGEPALGYSGRYGGGGG--GYNRGGYSMGGGGGYG------GGPGDMYGGSYGEPGG-G 337
Query: 277 YGRMLGPFPGGNSNR----FSTPVGFSGGNG-RGDSVLSSTTWNVWGNGSLNSATNPASP 331
YG G + GG + + +G +GG G RG G G +
Sbjct: 338 YGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGG 397
Query: 332 GAFLGSGSG 340
G+F G G G
Sbjct: 398 GSFYGGGGG 406
Score = 89 (36.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 36/113 (31%), Positives = 45/113 (39%)
Query: 188 PGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG 247
PG G G+ P+ S+ Y S GG+G M G GG G
Sbjct: 323 PGDMYGGSYGEPGGGYGGPSG---SYGGGYGSSGIGGYGGGMGG------AGGGGYR--G 371
Query: 248 GAGYGVGMNLDGGLSPSYG--GSSNFSNSL-GYGRMLGPFPGGNSNRFSTPVG 297
G GY +G + GG + YG G N S G G G + GG S R+ P G
Sbjct: 372 GGGYDMG-GVGGGGAGGYGAGGGGNGGGSFYGGGGGRGGYGGGGSGRYH-PYG 422
Score = 73 (30.8 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
Identities = 29/86 (33%), Positives = 36/86 (41%)
Query: 221 PAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLD-GGLSPSYGGSSNFSNSLGYGR 279
P+G +G S S + GG+ GG GY G D GG+ GG+ + G G
Sbjct: 341 PSGSYGGGYGS--SGIGGYGGGMGGAGGGGYRGGGGYDMGGVGG--GGAGGYGAG-GGGN 395
Query: 280 MLGPFPGGNSNRFSTPVGFSGGNGRG 305
G F GG R G GG G G
Sbjct: 396 GGGSFYGGGGGR-----GGYGGGGSG 416
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 105/251 (41%), Positives = 152/251 (60%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
D GK+FIGG+SW T E L++YF R+GEV E ++MRD AT RARGFGF+ F DP+ ++V
Sbjct: 43 DPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKV 102
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDF 122
+ ++ H +DG+ ++ K A P+ Q L +TKK+F+GGL++T T D
Sbjct: 103 LNNREHELDGKKIDPKVAFPKRTQAKLVT------------KTKKVFIGGLSATSTLEDM 150
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
K+YF+ +G + D ++M+D TQR RGFGF+T+DS+E D+V FHE+NGKMVE K+A
Sbjct: 151 KQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQ 210
Query: 183 PKEFS-PGP-SRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGG--FGVRMDSRFSPLAT 238
PKE P ++S N + P L ++AQ Y L GG + F+ +
Sbjct: 211 PKEVMLPVQLNKSRAAAARNL-YGMPPETLLAYAQ-Y-LPRFGGNLMYPNFTNVFNNMPG 267
Query: 239 GRGGISPFGGA 249
G G+S GG+
Sbjct: 268 GYSGLSTPGGS 278
Score = 199 (75.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 43/110 (39%), Positives = 64/110 (58%)
Query: 76 EAKKAVPRDDQNMLNRNTSS-IHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD 134
E V ++ LN ++ H S PG K+F+GGL+ T + + YF +FG + +
Sbjct: 17 ETSPPVDGHEEARLNADSDDGSHGSQDPG---KMFIGGLSWQTTAENLRDYFGRFGEVNE 73
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
+VM D T+R RGFGFIT+ +VD+VL+ HEL+GK ++ K A PK
Sbjct: 74 CMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
Score = 48 (22.0 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 263 PSYGGSSNFSNSLG-YGRMLGPF-----PGGNSNR----FSTPVGFSGGNG 303
P +GG+ + N + M G + PGG+SNR F T +S NG
Sbjct: 247 PRFGGNLMYPNFTNVFNNMPGGYSGLSTPGGSSNRPPHQFDTASLYSLNNG 297
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 128/339 (37%), Positives = 172/339 (50%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MD 66
+FIGG+SW T + L++YFS++GE+ E ++MRD T R+RGFGFV FADPA ++V+
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGL-ASTVTESDFKKY 125
H +D +T++ K A PR Q + RTKKIFVGGL A+TV E D K+Y
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVE-DVKQY 107
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T+++E+ V++V FHE+N KMVE K+A PKE
Sbjct: 108 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 167
Query: 186 --FSPGP-SRSSMIGYNNFGFNRPTNLLN--SFAQRYNLSPAGGFGVRMDSRFSPLATGR 240
F PG R+ + Y F +L +F Y G F +F
Sbjct: 168 VMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPG-FAPSYGYQFPGFPAAA 226
Query: 241 GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSG 300
G P A G + SY NF G P G N R P GF G
Sbjct: 227 YG--PVAAAAVAAAR---GSVLNSYSAQPNF------GAPASP-AGSNPAR---PGGFPG 271
Query: 301 GNGRGDSV-LSSTTWNVWGNGSLNSATNPASPGAFLGSG 338
N G L G G+ SA +P PG+ G G
Sbjct: 272 ANSPGPVADLYGPASQDSGVGNYISAASP-QPGSGFGHG 309
Score = 178 (67.7 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 35/79 (44%), Positives = 55/79 (69%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+F+GG+S +T E +K+YF ++G+V +A++M D+ T R RGFGFV F + V E+V +
Sbjct: 89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 148
Query: 66 DKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 149 HFHEINNKMVECKKAQPKE 167
Score = 81 (33.6 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 33/111 (29%), Positives = 49/111 (44%)
Query: 233 FSPLATGRGGISPFGGAGYGVGMNLDG--GLSPSYG-GSSNFSNSLGYGRMLGPFPGGNS 289
F P GR P+ + +GM + G +YG G F+ S GY FPG +
Sbjct: 170 FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGY-----QFPGFPA 224
Query: 290 NRFSTPVGFSGGNGRGDSVLSSTTWNV-WGNGSLNSATNPASPGAFLGSGS 339
+ + RG SVL+S + +G + + +NPA PG F G+ S
Sbjct: 225 AAYGPVAAAAVAAARG-SVLNSYSAQPNFGAPASPAGSNPARPGGFPGANS 274
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 445 (161.7 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
Identities = 112/294 (38%), Positives = 157/294 (53%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SW T + L++YF ++GE+ E ++MRD T R+RGFGF+ FAD + +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVD 76
Query: 62 RVIMDKHM-IDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGL-ASTVTE 119
+V+ H +D +T++ K A PR Q + RTKKIFVGGL ASTV E
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSASTVVE 124
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V++V FHE+N KMVE K
Sbjct: 125 -DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECK 183
Query: 180 RAVPKE--FSPGP-SRSSMIGYNNFGFNRPTNLLN--SFAQRYNLSPAGGFGVRMDSRFS 234
+A PKE F PG R+ + Y F +L+ + Y G F +F
Sbjct: 184 KAQPKEVMFPPGTRGRARSLPYTMDAFMLGMGMLSYPNIVATYGRGYTG-FSPSYSYQFP 242
Query: 235 PL-ATGRGGISPFG-GAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPG 286
AT G ++ A G G D G G S LGP G
Sbjct: 243 GFPATAYGPVAAAAVAAARGSGFP-DYGFYSGPGDQRAAPCSFADYATLGPHTG 295
Score = 43 (20.2 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 323 NSATNPASPGAFLGSGS 339
+S NP PG F G+ S
Sbjct: 322 SSGANPPRPGGFPGANS 338
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 450 (163.5 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 90/184 (48%), Positives = 122/184 (66%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
+D GK+FIGG+SW T E L++YF RYG++ EA++M+D T R+RGFGFV F+DP ++
Sbjct: 26 NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85
Query: 63 VIMD-KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESD 121
V+ H +DG+ V+ K A PR R + + RTKKIFVGGL++ T D
Sbjct: 86 VLTQGTHELDGKKVDPKVAFPR-------RAHPKMVT-----RTKKIFVGGLSAPTTLED 133
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
K YF+QFG I D ++M+D T R RGFGF+T+ SE+ VD+V FHE+N KMVE K+A
Sbjct: 134 VKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 193
Query: 182 VPKE 185
PKE
Sbjct: 194 QPKE 197
Score = 191 (72.3 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 42/119 (35%), Positives = 69/119 (57%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ + + YF ++G I++ +VM D T+R RGFGF+T+ +VD
Sbjct: 25 PNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVD 84
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP-SRSSMIGYNNFGFNRPTNL--LNSFAQRY 217
+VL + HEL+GK V+ K A P+ P +R+ I G + PT L + S+ +++
Sbjct: 85 KVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVG--GLSAPTTLEDVKSYFEQF 141
Score = 37 (18.1 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 26/114 (22%), Positives = 43/114 (37%)
Query: 197 GYNNFGFNRPT-NLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGM 255
GY +FG PT +L N N +P + + + + A P + +
Sbjct: 245 GYPSFGLPYPTVDLTNGQLTPNNNTPLLTQALSVMNNYQAAAAAAHSYGP-SASPHAAAA 303
Query: 256 NL---DGGLSPSYGG------SSNFSNSLGYGRMLGPFPGGNSNRFS-TPVGFS 299
N G S + G SS ++++GY + P P G S P+ +S
Sbjct: 304 NTATRQGFPSTNSPGPTIDMYSSAAADNVGYVQATSPQPSGFPIAVSRAPLNYS 357
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 110/297 (37%), Positives = 161/297 (54%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSS-PGP--GRTKKIFVGGLASTVTE 119
+ + H +DGR ++ K PR Q +R P R+ KIFVGG+ E
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGE 127
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
++ K+YF++FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVK
Sbjct: 128 TELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 187
Query: 180 RAVPKEF---SPGPSRSSMIGYNNFGFNRPTNLLNSFA----QRYN-LSPAGGF---GVR 228
RA P++ +PGP G N +G + N + Q + SP G + G
Sbjct: 188 RAEPRDSKSQTPGPP-----GSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQT 242
Query: 229 MDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFP 285
+ P GRGG P + G P G ++ +G GP P
Sbjct: 243 IGGYGQP--AGRGGPPPPPSFAPFLVSTTPGPFPPPQGFPPGYATPPPFGYGYGPPP 297
Score = 170 (64.9 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
++ G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 2 NNQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 158 EAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSR 192
V VL H L+G+ ++ K P+ P SR
Sbjct: 62 NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSR 96
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 439 (159.6 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 93/202 (46%), Positives = 127/202 (62%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+FIGG+SW T +E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q + RTKKIFVGGL+ T D K Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKHY 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -FSPGPS---RSSMIGYNNFGF 203
SP S RS ++ Y F
Sbjct: 189 VMSPTGSARGRSRVMPYGMDAF 210
Score = 188 (71.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 98 SSP-GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
+SP P K+F+GGL+ T+ ++YF QFG + + +VM D T+R RGFGF+T+
Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ VD+VL ++ HEL+ K ++ K A P+ P
Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRAQP 102
Score = 45 (20.9 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 18/63 (28%), Positives = 25/63 (39%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFS 293
A GR + P+G + G+GM G + +Y S + GY F S S
Sbjct: 196 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERSPLPS 255
Query: 294 TPV 296
PV
Sbjct: 256 APV 258
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 441 (160.3 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 93/202 (46%), Positives = 128/202 (63%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+FIGG+SW T +E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q + RTKKIFVGGL+ T D K+Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKQY 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -FSPGPS---RSSMIGYNNFGF 203
SP S RS ++ Y F
Sbjct: 189 VMSPTGSARGRSRVMPYGMDAF 210
Score = 188 (71.2 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 98 SSP-GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
+SP P K+F+GGL+ T+ ++YF QFG + + +VM D T+R RGFGF+T+
Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ VD+VL ++ HEL+ K ++ K A P+ P
Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRAQP 102
Score = 42 (19.8 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGY 277
A GR + P+G + G+GM G + +Y S + GY
Sbjct: 196 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 441 (160.3 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 93/202 (46%), Positives = 128/202 (63%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+FIGG+SW T +E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V+
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q + RTKKIFVGGL+ T D K+Y
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKQY 108
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A PKE
Sbjct: 109 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 168
Query: 186 -FSPGPS---RSSMIGYNNFGF 203
SP S RS ++ Y F
Sbjct: 169 VMSPTGSARGRSRVMPYGMDAF 190
Score = 42 (19.8 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGY 277
A GR + P+G + G+GM G + +Y S + GY
Sbjct: 176 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 219
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 121/329 (36%), Positives = 169/329 (51%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SW T + L++YFS++GE+ E ++MRD T R+RGFGFV FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGL-ASTVTE 119
+V+ H +D +T++ K A PR Q + RTKKIFVGGL A+TV E
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVE 124
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V++V FHE+N KMVE K
Sbjct: 125 -DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 180 RAVPKE--FSPGP-SRSSMIGYNNFGFNRPTNLLN--SFAQRYNLSPAGGFGVRMDSRFS 234
+A PKE F PG R+ + Y F +L +F Y G F +F
Sbjct: 184 KAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPG-FAPSYGYQFP 242
Query: 235 PLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG-YGRMLGPFP--GGNSNR 291
G P A G +P+ G +NS G + GP G N
Sbjct: 243 GFPAAAYG--PVAAAAVAAARG--SGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNY 298
Query: 292 FSTPVGFSGGNGRGDSVLSSTTWNVWGNG 320
S G+G G + + NG
Sbjct: 299 ISA-ASPQPGSGFGHGIAGPLIATAFTNG 326
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 133/375 (35%), Positives = 189/375 (50%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SW T + L++YFS++GE+ E ++MRD T R+RGFGFV FAD A +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVD 76
Query: 62 RVIMDKHM-IDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGL-ASTVTE 119
+V+ H +D +T++ K A PR Q + RTKKIFVGGL A+TV E
Sbjct: 77 KVLAQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVE 124
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V++V FHE+N KMVE K
Sbjct: 125 -DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 180 RAVPKE--FSPGP-SRSSMIGYNNFGFNRPTNLLN--SFAQRYNLSPAGGFGVRMDSRFS 234
+A PKE F PG R+ + Y F +L+ + Y G F +F
Sbjct: 184 KAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLSYPNIVATYGRGYTG-FAPSYSYQFP 242
Query: 235 PL-ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFS 293
AT G ++ G G + GG + + S G G F S++
Sbjct: 243 GFPATAYGPVAAAAAVAAARG---SGRGARGRGGYAAYPQSTGPGFPDYGFYSSPSDQRG 299
Query: 294 TPVGFS--GGNG-RGDSVLSSTTWNVWGNGSL----------NSATNPASPGAFLGSGS- 339
P F+ G G + +L S N L + TNP PGAF G+ S
Sbjct: 300 PPFSFADYGSLGPQAAQLLQSEHATSACNSPLQHLASPDQYKSPGTNPPRPGAFPGASSP 359
Query: 340 GNFEVSFGNNSVNWG 354
G +G S + G
Sbjct: 360 GPVADLYGPTSQDSG 374
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 439 (159.6 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 93/202 (46%), Positives = 127/202 (62%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+FIGG+SW T +E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q + RTKKIFVGGL+ T D K Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKHY 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -FSPGPS---RSSMIGYNNFGF 203
SP S RS ++ Y F
Sbjct: 189 VMSPTGSARGRSRVMPYGMDAF 210
Score = 188 (71.2 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 98 SSP-GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
+SP P K+F+GGL+ T+ ++YF QFG + + +VM D T+R RGFGF+T+
Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ VD+VL ++ HEL+ K ++ K A P+ P
Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRAQP 102
Score = 42 (19.8 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGY 277
A GR + P+G + G+GM G + +Y S + GY
Sbjct: 196 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 439 (159.6 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 93/202 (46%), Positives = 127/202 (62%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+FIGG+SW T +E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q + RTKKIFVGGL+ T D K Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKHY 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+QFG + D ++M+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A PKE
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -FSPGPS---RSSMIGYNNFGF 203
SP S RS ++ Y F
Sbjct: 189 VMSPTGSARGRSRVMPYGMDAF 210
Score = 188 (71.2 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 98 SSP-GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
+SP P K+F+GGL+ T+ ++YF QFG + + +VM D T+R RGFGF+T+
Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ VD+VL ++ HEL+ K ++ K A P+ P
Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRAQP 102
Score = 42 (19.8 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGY 277
A GR + P+G + G+GM G + +Y S + GY
Sbjct: 196 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 122/353 (34%), Positives = 180/353 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV ++ +
Sbjct: 37 LRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAA- 95
Query: 65 MDK--HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESD 121
MD H +DGR VE K+AV R+D S PG T KK+FVGG+ E
Sbjct: 96 MDARPHKVDGRAVEPKRAVSREDS-----------SKPGAHSTVKKMFVGGIKEDTDEEH 144
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
++YF QFG I +V +M + N+ + RGF FIT+D +AVDR++ + +H +NG EV++A
Sbjct: 145 LREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKA 204
Query: 182 VPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRG 241
+ +E S +S G G + N F + GG+G GRG
Sbjct: 205 LSREEMNRVSMNSRGGRGGGGGSGGGN----FGRGGGGGGGGGYGGGYGG-----GGGRG 255
Query: 242 GISPFGGA----GYGVGMNLDGGLSPSYGGSSNFSNSLG------YGRMLGPFPGGNSNR 291
G +GG GYG G GG P+YGG+ + + G YG G + GG +
Sbjct: 256 GGGGYGGGDGYNGYGGGNGGYGGGGPNYGGNRGYGSGGGGGGGGGYGNQGGGYGGGGYDN 315
Query: 292 FSTPVGFSGGNGR--GDSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSG 340
++ G GG G G + +N +GN + S++N P G + G G G
Sbjct: 316 YNNNGGGGGGGGNFGGGNFGGGGDYNDFGNYNNQSSSNYGPMKGGNYGGGGGG 368
Score = 220 (82.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 42/95 (44%), Positives = 62/95 (65%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY S VD
Sbjct: 34 PEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVD 93
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMI 196
+ H+++G+ VE KRAV +E S P S +
Sbjct: 94 AAMDARPHKVDGRAVEPKRAVSREDSSKPGAHSTV 128
Score = 202 (76.2 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 35/92 (38%), Positives = 61/92 (66%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
S + K+F+GGI DTDEE L+EYF ++G++ E IM ++ + + RGF F+ F D +R
Sbjct: 126 STVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDR 185
Query: 63 VIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNT 93
+++ K H ++G E +KA+ R++ N ++ N+
Sbjct: 186 IVIQKYHTVNGHNCEVRKALSREEMNRVSMNS 217
Score = 115 (45.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 42/130 (32%), Positives = 54/130 (41%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPS--YGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPV 296
GRGG GG GYG G GG YGG ++ GYG G + GG N +
Sbjct: 233 GRGG-GGGGGGGYGGGYGGGGGRGGGGGYGGGDGYN---GYGGGNGGYGGGGPN-YGGNR 287
Query: 297 GFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGS-GSGNFEVS-----FGN-- 348
G+ G G G +G G ++ N G G+ G GNF FGN
Sbjct: 288 GYGSGGGGGGGGGYGNQGGGYGGGGYDNYNNNGGGGGGGGNFGGGNFGGGGDYNDFGNYN 347
Query: 349 --NSVNWGPV 356
+S N+GP+
Sbjct: 348 NQSSSNYGPM 357
Score = 90 (36.7 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 36/119 (30%), Positives = 44/119 (36%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GG+G + G GG GG GYG N GG GG N++N+ G G G
Sbjct: 274 GGYGGGGPNYGGNRGYGSGG-GGGGGGGYG---NQGGGYGG--GGYDNYNNNGGGGGGGG 327
Query: 283 PFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASP-GAFLGSGSG 340
F GGN F N + S +G G + P G G GSG
Sbjct: 328 NFGGGNFGGGGDYNDFGNYNNQSSSNYGPMKGGNYGGGGGGGGRSGGGPYGGGYGGGSG 386
Score = 74 (31.1 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 27/93 (29%), Positives = 37/93 (39%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGM------NLDGGLSPSYGG--SSNFSNS 274
GG+G ++ G GG FGG +G G N + S +YG N+
Sbjct: 306 GGYGGGGYDNYNNNGGGGGGGGNFGGGNFGGGGDYNDFGNYNNQSSSNYGPMKGGNYGGG 365
Query: 275 LGYGRMLG--PFPGGNSNRFSTPVGFSGGNGRG 305
G G G P+ GG G+ GG+G G
Sbjct: 366 GGGGGRSGGGPYGGGYGGGSGGGGGYGGGSGGG 398
Score = 45 (20.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 239 GRGGISPFGGAGYGVG 254
G GG S GG GYG G
Sbjct: 390 GYGGGSGGGGGGYGGG 405
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 433 (157.5 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 92/202 (45%), Positives = 127/202 (62%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+FIGG+SW T +E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +D +T++ K A PR Q + RTKKIFVGGL+ T D K+Y
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKQY 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+QF + D ++M+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A PKE
Sbjct: 129 FEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 186 -FSPGPS---RSSMIGYNNFGF 203
SP S RS ++ Y F
Sbjct: 189 VMSPTGSARGRSRVMPYGMDAF 210
Score = 188 (71.2 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 98 SSP-GPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
+SP P K+F+GGL+ T+ ++YF QFG + + +VM D T+R RGFGF+T+
Sbjct: 11 ASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ VD+VL ++ HEL+ K ++ K A P+ P
Sbjct: 71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRAQP 102
Score = 42 (19.8 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGY 277
A GR + P+G + G+GM G + +Y S + GY
Sbjct: 196 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 127/361 (35%), Positives = 185/361 (51%)
Query: 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM 65
GK+FIGG+ DT ++F +YGE+ ++VIMRDR TG+ RGFGF+ FADP+V ++VI
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
D H+I+G+ VE K+ +P+ +++ +TKKIFVGG+ STVTE + K +
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKDI----------KTKKIFVGGIPSTVTEDELKDF 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK-TFHELNGKMVEVKRAVPK 184
F ++G + + V+ DH T R RGFGF+ +DSEE VD +L K ++ VE+K+A PK
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 185 EFSPGPSRSSMIGYNNFGFNRPTN-LLNSFAQRYNLSPAGGFG-----VRMD----SRFS 234
+ S S S Y + R +N S+ Y GG+G +R SR++
Sbjct: 189 K-SLNRSPPS---YGSHPRGRSSNDSYASYGGPYG-GFDGGYGHPPGPIRSHGGPASRYA 243
Query: 235 P-LATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFS 293
GRG + P G GY N GG S GG N LGY GP+ G
Sbjct: 244 GGYGYGRGSVGPEFGGGYN---NYGGG---SLGGYRN-EPPLGYSSRFGPYGSGFGGE-- 294
Query: 294 TPVGFS-GGNGR--GDSVLSSTTWNVWGNGSLNSATNPASPG-AFLGSGSGNFEVSFGNN 349
G+ GG G G + +G A PG ++ G+G G + + ++
Sbjct: 295 ---GYGRGGEGAYLGYPRGGGEGYGGYGGPGYGGAYESGGPGGSYEGAG-GPYGRGYSSS 350
Query: 350 S 350
S
Sbjct: 351 S 351
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 124/354 (35%), Positives = 185/354 (52%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLS---PSY-GGSSNF-SNSLGYGRMLGPFPG-GNSNR 291
G GG +GG+G G G DGG P Y GGS + S GYG + G G+ +
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDS 289
Query: 292 FSTPVGFSG-GNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNF 342
++ G G G G G + ++N +GN + N ++N P G F G SG +
Sbjct: 290 YNNGGGGGGYGGGSGSNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSGPY 342
Score = 225 (84.3 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 121 (47.7 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 47/147 (31%), Positives = 62/147 (42%)
Query: 212 SFAQRYNLSPAGGFGVRMDSRFSPLAT-GRGGISPFGG-AGYGVGMNLDGGLSPSYGGSS 269
S +QR S +G FG F GRGG F G G+G G GG S G +
Sbjct: 190 SSSQR-GRSGSGNFGGGRGGGFGGNDNFGRGG--NFSGRGGFG-GSRGGGGYGGSGDGYN 245
Query: 270 NFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPA 329
F N GYG GP G S + + G G +G S +++ + NG
Sbjct: 246 GFGNDGGYGGG-GPGYSGGSRGYGS--GGQGYGNQGSGYGGSGSYDSYNNGGGGGGYGGG 302
Query: 330 SPGAFLGSGSGNFEVSFGNNSVNWGPV 356
S F G GS N ++ N S N+GP+
Sbjct: 303 SGSNFGGGGSYNDFGNYNNQSSNFGPM 329
Score = 78 (32.5 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 37/118 (31%), Positives = 50/118 (42%)
Query: 202 GFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGL 261
G++ + S Q Y + G+G + G GG GG G G G N GG
Sbjct: 259 GYSGGSRGYGSGGQGYG-NQGSGYGG--SGSYDSYNNGGGG----GGYGGGSGSNFGGGG 311
Query: 262 SPS-YGGSSNFSNSLGY-------GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
S + +G +N S++ G GR GP+ GG F+ P GG G G S SS
Sbjct: 312 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY-GGGGQYFAKPRN-QGGYG-GSSSSSS 366
Score = 70 (29.7 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 24/53 (45%), Positives = 28/53 (52%)
Query: 231 SRFSPLATGR-GGIS--PFGGAG-YGVGMNLDGGLSPSYGGSSNFSNSLGYGR 279
S F P+ G GG S P+GG G Y GG YGGSS+ S+S G GR
Sbjct: 324 SNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGG----YGGSSS-SSSYGSGR 371
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 124/354 (35%), Positives = 185/354 (52%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLS---PSY-GGSSNF-SNSLGYGRMLGPFPG-GNSNR 291
G GG +GG+G G G DGG P Y GGS + S GYG + G G+ +
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDS 289
Query: 292 FSTPVGFSG-GNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNF 342
++ G G G G G + ++N +GN + N ++N P G F G SG +
Sbjct: 290 YNNGGGGGGFGGGSGSNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSGPY 342
Score = 225 (84.3 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 121 (47.7 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 47/147 (31%), Positives = 62/147 (42%)
Query: 212 SFAQRYNLSPAGGFGVRMDSRFSPLAT-GRGGISPFGG-AGYGVGMNLDGGLSPSYGGSS 269
S +QR S +G FG F GRGG F G G+G G GG S G +
Sbjct: 190 SSSQR-GRSGSGNFGGGRGGGFGGNDNFGRGG--NFSGRGGFG-GSRGGGGYGGSGDGYN 245
Query: 270 NFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPA 329
F N GYG GP G S + + G G +G S +++ + NG
Sbjct: 246 GFGNDGGYGGG-GPGYSGGSRGYGS--GGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGG 302
Query: 330 SPGAFLGSGSGNFEVSFGNNSVNWGPV 356
S F G GS N ++ N S N+GP+
Sbjct: 303 SGSNFGGGGSYNDFGNYNNQSSNFGPM 329
Score = 78 (32.5 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 37/118 (31%), Positives = 50/118 (42%)
Query: 202 GFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGL 261
G++ + S Q Y + G+G + G GG GG G G G N GG
Sbjct: 259 GYSGGSRGYGSGGQGYG-NQGSGYGG--SGSYDSYNNGGGG----GGFGGGSGSNFGGGG 311
Query: 262 SPS-YGGSSNFSNSLGY-------GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
S + +G +N S++ G GR GP+ GG F+ P GG G G S SS
Sbjct: 312 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY-GGGGQYFAKPRN-QGGYG-GSSSSSS 366
Score = 70 (29.7 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 24/53 (45%), Positives = 28/53 (52%)
Query: 231 SRFSPLATGR-GGIS--PFGGAG-YGVGMNLDGGLSPSYGGSSNFSNSLGYGR 279
S F P+ G GG S P+GG G Y GG YGGSS+ S+S G GR
Sbjct: 324 SNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGG----YGGSSS-SSSYGSGR 371
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 123/353 (34%), Positives = 184/353 (52%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLS---PSY-GGSSNF-SNSLGYGRMLGPFPG-GNSNR 291
G GG +GG+G G G DGG P Y GGS + S GYG + G G+ +
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDS 289
Query: 292 FSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNF 342
++ G G G G + ++N +GN + N ++N P G F G SG +
Sbjct: 290 YNNGGGGGFGGGSGSNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSGPY 341
Score = 225 (84.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 116 (45.9 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 47/147 (31%), Positives = 62/147 (42%)
Query: 212 SFAQRYNLSPAGGFGVRMDSRFSPLAT-GRGGISPFGG-AGYGVGMNLDGGLSPSYGGSS 269
S +QR S +G FG F GRGG F G G+G G GG S G +
Sbjct: 190 SSSQR-GRSGSGNFGGGRGGGFGGNDNFGRGG--NFSGRGGFG-GSRGGGGYGGSGDGYN 245
Query: 270 NFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPA 329
F N GYG GP G S + + G G +G S +++ + NG
Sbjct: 246 GFGNDGGYGGG-GPGYSGGSRGYGS--GGQGYGNQGSGYGGSGSYDSYNNGG-GGGFGGG 301
Query: 330 SPGAFLGSGSGNFEVSFGNNSVNWGPV 356
S F G GS N ++ N S N+GP+
Sbjct: 302 SGSNFGGGGSYNDFGNYNNQSSNFGPM 328
Score = 77 (32.2 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 41/124 (33%), Positives = 48/124 (38%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFA-QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG 247
G SR G +G N+ + S + YN GGFG S F G G + FG
Sbjct: 262 GGSRGYGSGGQGYG-NQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFG----GGGSYNDFG 316
Query: 248 GAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDS 307
Y N P GG NF GR GP+ GG F+ P GG G G S
Sbjct: 317 N--YN---NQSSNFGPMKGG--NFG-----GRSSGPY-GGGGQYFAKPRN-QGGYG-GSS 361
Query: 308 VLSS 311
SS
Sbjct: 362 SSSS 365
Score = 70 (29.7 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 24/53 (45%), Positives = 28/53 (52%)
Query: 231 SRFSPLATGR-GGIS--PFGGAG-YGVGMNLDGGLSPSYGGSSNFSNSLGYGR 279
S F P+ G GG S P+GG G Y GG YGGSS+ S+S G GR
Sbjct: 323 SNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGG----YGGSSS-SSSYGSGR 370
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 124/354 (35%), Positives = 185/354 (52%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 34 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 93
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 94 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 143 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 202
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 203 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 253
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLS---PSY-GGSSNF-SNSLGYGRMLGPFPG-GNSNR 291
G GG +GG+G G G DGG P Y GGS + S GYG + G G+ +
Sbjct: 254 GGGG---YGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDS 310
Query: 292 FSTPVGFSG-GNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNF 342
++ G G G G G + ++N +GN + N ++N P G F G SG +
Sbjct: 311 YNNGGGGGGYGGGSGSNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSGPY 363
Score = 224 (83.9 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 44/101 (43%), Positives = 68/101 (67%)
Query: 91 RNTSSIHSSPG-PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF 149
R+ + SP P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGF
Sbjct: 19 RDKKARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 78
Query: 150 GFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
GF+TY + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 79 GFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 119
Score = 121 (47.7 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 47/147 (31%), Positives = 62/147 (42%)
Query: 212 SFAQRYNLSPAGGFGVRMDSRFSPLAT-GRGGISPFGG-AGYGVGMNLDGGLSPSYGGSS 269
S +QR S +G FG F GRGG F G G+G G GG S G +
Sbjct: 211 SSSQR-GRSGSGNFGGGRGGGFGGNDNFGRGG--NFSGRGGFG-GSRGGGGYGGSGDGYN 266
Query: 270 NFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPA 329
F N GYG GP G S + + G G +G S +++ + NG
Sbjct: 267 GFGNDGGYGGG-GPGYSGGSRGYGS--GGQGYGNQGSGYGGSGSYDSYNNGGGGGGYGGG 323
Query: 330 SPGAFLGSGSGNFEVSFGNNSVNWGPV 356
S F G GS N ++ N S N+GP+
Sbjct: 324 SGSNFGGGGSYNDFGNYNNQSSNFGPM 350
Score = 95 (38.5 bits), Expect = 5.4e-22, Sum P(2) = 5.4e-22
Identities = 37/112 (33%), Positives = 46/112 (41%)
Query: 202 GFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGL 261
G++ + S Q Y + G+G + G GG GG G G G N GG
Sbjct: 280 GYSGGSRGYGSGGQGYG-NQGSGYGG--SGSYDSYNNGGGG----GGYGGGSGSNFGGG- 331
Query: 262 SPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPVGFSGGNGRGDSVLSST 312
SY N++N GP GGN R S P G GG G G S SS+
Sbjct: 332 -GSYNDFGNYNNQ---SSNFGPMKGGNFGGRSSGPYG--GGGGYGGSSSSSS 377
Score = 38 (18.4 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 16/55 (29%), Positives = 20/55 (36%)
Query: 186 FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR 240
F G S + YNN N +F R + GG G S S +GR
Sbjct: 328 FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGGYGGSSSSSSYGSGR 382
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 426 (155.0 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 75/179 (41%), Positives = 120/179 (67%)
Query: 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM 65
GK+FIGG++W+T ++ L++YF ++GEV++ +MRD TGR+RGFGF+ F +P V+
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS 222
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +DG+ ++ K+A+PR++Q +T K+FVGG+ TE +F+ +
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQE----------------KTAKMFVGGVPGDCTEEEFRNF 266
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
F+QFG + D +M D +T RPRGFGF+TY++E AV+ + + + ++GK VEVKRA PK
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 196 (74.1 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 38/98 (38%), Positives = 60/98 (61%)
Query: 88 MLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPR 147
M + ++ +SP K+F+GGL T+ + YF+QFG + D VM D T R R
Sbjct: 145 MESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSR 204
Query: 148 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
GFGF+T+ + + V+ V+ K H L+GK+++ KRA+P+E
Sbjct: 205 GFGFLTFKNPKCVNEVMSKE-HHLDGKIIDPKRAIPRE 241
Score = 39 (18.8 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 241 GGISPFGGAGYGVGMNLDGGLSPS 264
G +P+ Y MN+ GG++P+
Sbjct: 341 GNANPY----YAQNMNMYGGMTPA 360
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 121/361 (33%), Positives = 182/361 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 94 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 183 PKEF--SPGPSRSSMIGYNNFGFNRPTNLLN--SFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S G R G NF R N +F + N GG+G
Sbjct: 203 SKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 261
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS-LGYGRMLGPFPGGNSNRFSTPVG 297
G GG + FGG G G N GG P Y + GYG G + GG + G
Sbjct: 262 GDGGYNGFGGDG---G-NYGGG--PGYSSRGGYGGGGPGYGNQGGGYGGGGGG-YD---G 311
Query: 298 FS-GGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLGSGSGN-FEVSFGNNSVNW 353
++ GGN G + +N +GN G S P G+F G SG+ + +G+ +
Sbjct: 312 YNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSG 371
Query: 354 G 354
G
Sbjct: 372 G 372
Score = 215 (80.7 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 82 PRDDQNMLNRNTSSI-HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD 140
P+ D R H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 121/362 (33%), Positives = 181/362 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 94 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 183 PKEF--SPGPSRSSMIGYNNFGFNRPTNLLN---SFAQRYNLSPAGGFGVRMDSRFSPLA 237
K+ S G R G NF R N +F + N GG+G
Sbjct: 203 SKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS-LGYGRMLGPFPGGNS-NRFSTP 295
G GG + FGG G G N GG P Y + GYG G + GG + ++
Sbjct: 262 GGDGGYNGFGGDG-G---NYGGG--PGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEG 315
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLGSGSGN-FEVSFGNNSVN 352
F GGN G +N +GN G S P G+F G SG+ + +G+ +
Sbjct: 316 GNFGGGNYGGGG-----NYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 370
Query: 353 WG 354
G
Sbjct: 371 GG 372
Score = 215 (80.7 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 82 PRDDQNMLNRNTSSI-HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD 140
P+ D R H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 121/362 (33%), Positives = 182/362 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 94 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 183 PKEF--SPGPSRSSMIGYNNFGFNRPTNLLN---SFAQRYNLSPAGGFGVRMDSRFSPLA 237
K+ S G R G NF R N +F + N GG+G
Sbjct: 203 SKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS-LGYGRMLGPFPGGNSNRFSTPV 296
G GG + FGG G G N GG P Y + GYG G + GG +
Sbjct: 262 GGDGGYNGFGGDG-G---NYGGG--PGYSSRGGYGGGGPGYGNQGGGYGGGGGG-YD--- 311
Query: 297 GFS-GGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLGSGSGN-FEVSFGNNSVN 352
G++ GGN G + +N +GN G S P G+F G SG+ + +G+ +
Sbjct: 312 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 371
Query: 353 WG 354
G
Sbjct: 372 GG 373
Score = 215 (80.7 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 82 PRDDQNMLNRNTSSI-HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD 140
P+ D R H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 121/362 (33%), Positives = 182/362 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 94 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 183 PKEF--SPGPSRSSMIGYNNFGFNRPTNLLN---SFAQRYNLSPAGGFGVRMDSRFSPLA 237
K+ S G R G NF R N +F + N GG+G
Sbjct: 203 SKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS-LGYGRMLGPFPGGNSNRFSTPV 296
G GG + FGG G G N GG P Y + GYG G + GG +
Sbjct: 262 GGDGGYNGFGGDG-G---NYGGG--PGYSSRGGYGGGGPGYGNQGGGYGGGGGG-YD--- 311
Query: 297 GFS-GGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLGSGSGN-FEVSFGNNSVN 352
G++ GGN G + +N +GN G S P G+F G SG+ + +G+ +
Sbjct: 312 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS 371
Query: 353 WG 354
G
Sbjct: 372 GG 373
Score = 215 (80.7 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 82 PRDDQNMLNRNTSSI-HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD 140
P+ D R H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 131/368 (35%), Positives = 179/368 (48%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE-RV 63
L KLFIGG+S++T ++ L+ +F ++G + + V+M+D T R+RGFGFV ++ +V E
Sbjct: 32 LRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYS--SVDEVNA 89
Query: 64 IMDK--HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESD 121
MD H +DGR VE K+AV R+D + +T+ KKIFVGG+ E+
Sbjct: 90 SMDARPHKVDGRLVEPKRAVSREDSSKPFAHTT----------VKKIFVGGIKDDTEENH 139
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ YFDQFG I V +M DH T RGF F+T+D ++VDR++ + +H +NG EV++A
Sbjct: 140 LRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKA 199
Query: 182 VPKEFSPGPSRSSMIGYNNFG--FNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
+ K+ R G G FNR N N + GG G R D F G
Sbjct: 200 LSKQEMANTGRGGGGGGGGGGGNFNRYGN--NG-GYNNDFGGGGGGGNR-DGYFGRGGRG 255
Query: 240 RGGISPFGGAGYGVG---MNLDGGLSPS-YGGSS-NFSNSLG-YG--RMLGPFPGGNSNR 291
GG GYG G N + G YGG N S G YG R G GG
Sbjct: 256 NNFGGGGGGGGYGGGGDCYNNNNGFGGGGYGGGGGNGGGSPGNYGGNRGYGGGGGGGHGY 315
Query: 292 FSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGN-NS 350
+ G+ GGN G +N GNG+ G SG G FGN NS
Sbjct: 316 GNQGGGYGGGNSGGGGG-GYNNYNN-GNGNFGGGNFGGGGGGGGNSGGGGNYNDFGNYNS 373
Query: 351 V--NWGPV 356
N+GP+
Sbjct: 374 QQSNYGPM 381
Score = 216 (81.1 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 40/89 (44%), Positives = 62/89 (69%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY S + V+
Sbjct: 29 PEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVN 88
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 89 ASMDARPHKVDGRLVEPKRAVSREDSSKP 117
Score = 82 (33.9 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 37/121 (30%), Positives = 48/121 (39%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSP--SYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPV 296
G G GG G+G G N GG S GG ++N Y G F GGN
Sbjct: 301 GNRGYGGGGGGGHGYG-NQGGGYGGGNSGGGGGGYNN---YNNGNGNFGGGNFGGGGGGG 356
Query: 297 GFSGGNGR-GDSVLSSTTWNVWG--NGSLNSATNPASP--GAFLG--SGSGNFEVSFGNN 349
G SGG G D ++ + +G G+ + P G + G SGSG +G
Sbjct: 357 GNSGGGGNYNDFGNYNSQQSNYGPMKGNFGGGGRNSGPYGGGYGGGSSGSGGGGSGYGGG 416
Query: 350 S 350
S
Sbjct: 417 S 417
Score = 68 (29.0 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 218 NLSPAGGFGVRMDSRFSPLATGRGG----ISPFGGAGYGVGMNLDGGLSPSYGGSS 269
N + G + + S + P+ GG P+GG GYG G + GG YGG S
Sbjct: 364 NYNDFGNYNSQQ-SNYGPMKGNFGGGGRNSGPYGG-GYGGGSSGSGGGGSGYGGGS 417
Score = 68 (29.0 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 26/77 (33%), Positives = 33/77 (42%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGG----SSNFS----NSLGYGRMLGPFPGG--- 287
G G FGG G G G + GG +G SN+ N G GR GP+ GG
Sbjct: 342 GNFGGGNFGGGGGGGGNSGGGGNYNDFGNYNSQQSNYGPMKGNFGGGGRNSGPYGGGYGG 401
Query: 288 -NSNRFSTPVGFSGGNG 303
+S G+ GG+G
Sbjct: 402 GSSGSGGGGSGYGGGSG 418
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 121/361 (33%), Positives = 181/361 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 94 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 183 PKEF--SPGPSRSSMIGYNNFGFNRPTNLLN---SFAQRYNLSPAGGFGVRMDSRFSPLA 237
K+ S G R G NF R N +F + N GG+G
Sbjct: 203 SKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG 297
G GG + FGG G G N GG S G GYG G + GG + G
Sbjct: 262 GGDGGYNGFGGDG-G---NYGGGPGYSSRGGYGGGGPGGYGNQGGGYGGGGGG-YD---G 313
Query: 298 FS-GGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLGSGSGN-FEVSFGNNSVNW 353
++ GGN G + +N +GN G S P G+F G SG+ + +G+ +
Sbjct: 314 YNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSG 373
Query: 354 G 354
G
Sbjct: 374 G 374
Score = 216 (81.1 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 43/110 (39%), Positives = 67/110 (60%)
Query: 82 PRDDQNMLNRNTSSI-HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD 140
P+ D R + H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D
Sbjct: 10 PQPDSGRRRRRRGAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 119/361 (32%), Positives = 179/361 (49%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 12 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 71
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 72 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 120
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 121 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 180
Query: 183 PKEF--SPGPSRSSMIGYNNFGFNRPTNLLN---SFAQRYNLSPAGGFGVRMDSRFSPLA 237
K+ S G R G NF R N +F + N G +G S
Sbjct: 181 SKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFXRGGNFGGKGXYGGGGGGXRSSYG 239
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG 297
G GG + FGG G G YGG GYG G + GG + G
Sbjct: 240 GGDGGYNGFGGDGGNYGGGSGSSSRGGYGGGGP-----GYGNQGGGYGGGGGG-YD---G 290
Query: 298 FS-GGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLGSGSGN-FEVSFGNNSVNW 353
++ GGN G + +N +GN G S P G+F G SG+ + +G+ +
Sbjct: 291 YNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSG 350
Query: 354 G 354
G
Sbjct: 351 G 351
Score = 213 (80.0 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 40/94 (42%), Positives = 62/94 (65%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY
Sbjct: 4 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 63
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 64 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 97
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 91/227 (40%), Positives = 134/227 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG++WDT E+ L+EYF +YG V + IM+D ATGR+RGFGF+ F P+ + V+
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126
+H++DG+ ++ K+A+PRD+Q+ +T KIFVGG+ V +F+++F
Sbjct: 220 QHILDGKVIDPKRAIPRDEQD----------------KTGKIFVGGIGPDVRPKEFEEFF 263
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEF 186
Q+GTI D +M D +T + RGFGF+TYDS +AVDRV F + + +E+KRA P+
Sbjct: 264 SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPRHM 323
Query: 187 SPGPSRSS-MIGYNNFGFNRPTNLLNS--FAQRYNLSPAGGFGVRMD 230
S + G NN R N N F Q Y GG+ M+
Sbjct: 324 QQKSSNNGGNNGGNNMN-RRGGNFGNQGDFNQMYQNPMMGGYNPMMN 369
Score = 173 (66.0 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 2 ESD-LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
E D GK+F+GGI D + +E+FS++G +++A +M D+ TG++RGFGFV +
Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297
Query: 61 ERVIMDKHM-IDGRTVEAKKAVPRDDQNMLNRN 92
+RV +K + R +E K+A PR Q + N
Sbjct: 298 DRVCQNKFIDFKDRKIEIKRAEPRHMQQKSSNN 330
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 89/215 (41%), Positives = 133/215 (61%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
++ L KLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP
Sbjct: 51 QAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 110
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
V+ + H +DGR ++ K+ PR D + N KIFVGG+ E+
Sbjct: 111 TVLASRPHTLDGRNIDPKQKGPRSDNSKSN----------------KIFVGGIPHNCGET 154
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKR
Sbjct: 155 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 214
Query: 181 AVPKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFA 214
A P++ S P + G + +G N N +A
Sbjct: 215 AEPRDSKSQAPGQP---GASQWGSRVVPNAANGWA 246
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 114/351 (32%), Positives = 169/351 (48%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S S G NFGF +S N P G R S +GRG
Sbjct: 191 QEMQEVQSSRSGRG-GNFGFG------DSRGGGGNFGPGPGSNFRGGS--DGYGSGRGFG 241
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+ G G G G GG SP YGG GYG G + GG N G
Sbjct: 242 DGYNGYGGGPGGGNFGG-SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGSY 300
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
N G+ + + +G+ + N P G G G +G S
Sbjct: 301 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351
Score = 196 (74.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 93 (37.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 35/121 (28%), Positives = 49/121 (40%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNSLGYGRMLGPFPGG-NSNRFSTP 295
+GRGG FG + G G N G ++ GGS + + G+G + GG F
Sbjct: 201 SGRGGNFGFGDSRGGGG-NFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 259
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGP 355
G+ GG RG + G G N G GSGS N ++ N+GP
Sbjct: 260 PGYGGG--RGGYGGGGPGYGNQGGGYGGGYDNYG--GGNYGSGSYNDFGNYNQQPSNYGP 315
Query: 356 V 356
+
Sbjct: 316 M 316
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 114/351 (32%), Positives = 169/351 (48%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 70 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV++A+ +
Sbjct: 119 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S S G NFGF +S N P G R S +GRG
Sbjct: 179 QEMQEVQSSRSGRG-GNFGFG------DSRGGGGNFGPGPGSNFRGGS--DGYGSGRGFG 229
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+ G G G G GG SP YGG GYG G + GG N G
Sbjct: 230 DGYNGYGGGPGGGNFGG-SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 288
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
N G+ + + +G+ + N P G G G +G S
Sbjct: 289 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
Score = 196 (74.1 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKP 93
Score = 90 (36.7 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 37/124 (29%), Positives = 52/124 (41%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNSLGYGRMLGPFPGG-NSNRFSTP 295
+GRGG FG + G G N G ++ GGS + + G+G + GG F
Sbjct: 189 SGRGGNFGFGDSRGGGG-NFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 247
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSV---N 352
G+ GG RG + G G N G + GSGN+ FGN + N
Sbjct: 248 PGYGGG--RGGYGGGGPGYGNQGGGYGGGYDNYGG-GNY---GSGNYN-DFGNYNQQPSN 300
Query: 353 WGPV 356
+GP+
Sbjct: 301 YGPM 304
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 114/351 (32%), Positives = 169/351 (48%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S S G NFGF +S N P G R S +GRG
Sbjct: 191 QEMQEVQSSRSGRG-GNFGFG------DSRGGGGNFGPGPGSNFRGGS--DGYGSGRGFG 241
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+ G G G G GG SP YGG GYG G + GG N G
Sbjct: 242 DGYNGYGGGPGGGNFGG-SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 300
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
N G+ + + +G+ + N P G G G +G S
Sbjct: 301 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351
Score = 196 (74.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 90 (36.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 37/124 (29%), Positives = 52/124 (41%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNSLGYGRMLGPFPGG-NSNRFSTP 295
+GRGG FG + G G N G ++ GGS + + G+G + GG F
Sbjct: 201 SGRGGNFGFGDSRGGGG-NFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 259
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSV---N 352
G+ GG RG + G G N G + GSGN+ FGN + N
Sbjct: 260 PGYGGG--RGGYGGGGPGYGNQGGGYGGGYDNYGG-GNY---GSGNYN-DFGNYNQQPSN 312
Query: 353 WGPV 356
+GP+
Sbjct: 313 YGPM 316
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 114/351 (32%), Positives = 169/351 (48%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S S G NFGF +S N P G R S +GRG
Sbjct: 191 QEMQEVQSSRSGRG-GNFGFG------DSRGGGGNFGPGPGSNFRGGS--DGYGSGRGFG 241
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+ G G G G GG SP YGG GYG G + GG N G
Sbjct: 242 DGYNGYGGGPGGGNFGG-SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 300
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
N G+ + + +G+ + N P G G G +G S
Sbjct: 301 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351
Score = 196 (74.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 90 (36.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 37/124 (29%), Positives = 52/124 (41%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNSLGYGRMLGPFPGG-NSNRFSTP 295
+GRGG FG + G G N G ++ GGS + + G+G + GG F
Sbjct: 201 SGRGGNFGFGDSRGGGG-NFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 259
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSV---N 352
G+ GG RG + G G N G + GSGN+ FGN + N
Sbjct: 260 PGYGGG--RGGYGGGGPGYGNQGGGYGGGYDNYGG-GNY---GSGNYN-DFGNYNQQPSN 312
Query: 353 WGPV 356
+GP+
Sbjct: 313 YGPM 316
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 114/351 (32%), Positives = 169/351 (48%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 81 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 129
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV++A+ +
Sbjct: 130 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S S G NFGF +S N P G R S +GRG
Sbjct: 190 QEMQEVQSSRSGRG-GNFGFG------DSRGGGGNFGPGPGSNFRGGS--DGYGSGRGFG 240
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+ G G G G GG SP YGG GYG G + GG N G
Sbjct: 241 DGYNGYGGGPGGGNFGG-SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 299
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
N G+ + + +G+ + N P G G G +G S
Sbjct: 300 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 350
Score = 196 (74.1 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKP 104
Score = 90 (36.7 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 37/124 (29%), Positives = 52/124 (41%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNSLGYGRMLGPFPGG-NSNRFSTP 295
+GRGG FG + G G N G ++ GGS + + G+G + GG F
Sbjct: 200 SGRGGNFGFGDSRGGGG-NFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 258
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSV---N 352
G+ GG RG + G G N G + GSGN+ FGN + N
Sbjct: 259 PGYGGG--RGGYGGGGPGYGNQGGGYGGGYDNYGG-GNY---GSGNYN-DFGNYNQQPSN 311
Query: 353 WGPV 356
+GP+
Sbjct: 312 YGPM 315
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 113/351 (32%), Positives = 169/351 (48%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G + + ++ D + + RGFGF T+D + VD+++ + +H +NG EV++A+ +
Sbjct: 131 YFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S S G NFGF +S N P G R S +GRG
Sbjct: 191 QEMQEVQSSRSGRG-GNFGFG------DSHGGGGNFGPGPGSNFRGGSY--GYGSGRGFG 241
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+ G G G+G GG+ P YGG GYG G + GG N G
Sbjct: 242 DGYNGYGGGLGGGNFGGI-PGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 300
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
N G+ + + +GS + N P G G G +G S
Sbjct: 301 NDFGNYNQQPSNYGPMKSGSFGGSRNMEGPYGGGNYGPGGSGGSGGYGGRS 351
Score = 196 (74.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 90 (36.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 37/124 (29%), Positives = 53/124 (42%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNSLGYGRMLGPFPGG-NSNRFSTP 295
+GRGG FG + +G G N G ++ GGS + + G+G + GG F
Sbjct: 201 SGRGGNFGFGDS-HGGGGNFGPGPGSNFRGGSYGYGSGRGFGDGYNGYGGGLGGGNFGGI 259
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSV---N 352
G+ GG RG + G G N G + GSGN+ FGN + N
Sbjct: 260 PGYGGG--RGGYGGGGPGYGNQGGGYGGGYDNYGG-GNY---GSGNYN-DFGNYNQQPSN 312
Query: 353 WGPV 356
+GP+
Sbjct: 313 YGPM 316
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 114/351 (32%), Positives = 168/351 (47%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD++ + +H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSR 190
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S S G NFGF +S N P G R S +GRG
Sbjct: 191 QEMQEVQSSRSGRG-GNFGFG------DSRGGGGNFGPGPGSNFRGGS--DGYGSGRGFG 241
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+ G G G G GG SP YGG GYG G + GG N G
Sbjct: 242 DGYNGYGGGPGGGNFGG-SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 300
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
N G+ + + +G+ + N P G G G +G S
Sbjct: 301 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351
Score = 196 (74.1 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 124/368 (33%), Positives = 183/368 (49%)
Query: 5 LGKLFIGGISWDTDEERLKEYFS-------RYGEVVEAVIMRDRATGRARGFGFVVFADP 57
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++
Sbjct: 12 LRKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCE 71
Query: 58 AVAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLAST 116
V + H +DGR VE K+AV R+D S+ PG T KKIFVGG+
Sbjct: 72 EVDAAMCARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKED 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMV 176
E + + YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG
Sbjct: 121 TGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNC 180
Query: 177 EVKRAVPKEF--SPGPSRSSMIGYNNF---GFNRPTNLLNSFAQRYNLSPAGGFGVRMDS 231
EVK+A+ K+ S G R G NF G N N F + N GG+G
Sbjct: 181 EVKKALSKQEMQSAGSQRGCGGGSGNFMGHGGNFGGGGGN-FGRGGNFGGRGGYGGGGGG 239
Query: 232 RFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS-LGYGRMLGPFPGGNSN 290
G GG + FGG G G N GG P Y + GYG G + GG +
Sbjct: 240 SRGSYGGGDGGYNGFGGDG-G---NYGGG--PGYSSRGGYGGGGPGYGNQGGGY-GGGAG 292
Query: 291 RFSTPVGFS-GGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLGSGSGN-FEVSF 346
+ G++ GGN G + +N +GN G S P G+F G SG+ + +
Sbjct: 293 GYD---GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGY 349
Query: 347 GNNSVNWG 354
G+ S + G
Sbjct: 350 GSGSGSGG 357
Score = 191 (72.3 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 41/101 (40%), Positives = 63/101 (62%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFD-------QFGTITDVVVMYDHNTQRPRGF 149
H P + +K+F+GGL+ T+ +++F+ ++GT+TD VVM D T+R RGF
Sbjct: 4 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGF 63
Query: 150 GFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
GF+TY EE VD + H+++G++VE KRAV +E S P
Sbjct: 64 GFVTYSCEE-VDAAMCARPHKVDGRVVEPKRAVSREDSVKP 103
Score = 52 (23.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 24/83 (28%), Positives = 35/83 (42%)
Query: 197 GYNNFGFNRPTNLLN-SFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGM 255
GY+ G+N N ++ N + G + + S + P+ +GG FGG G
Sbjct: 293 GYD--GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPM---KGG--SFGGRSSG--- 342
Query: 256 NLDGGLSPSYGGSSNFSNSLGYG 278
SP GG + S S GYG
Sbjct: 343 ------SPYGGGYGSGSGSGGYG 359
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 114/351 (32%), Positives = 168/351 (47%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 82 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + H +NG EV++A+ +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSR 190
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S S G NFGF +S N P G R S +GRG
Sbjct: 191 QEMQEVQSSRSGRG-GNFGFG------DSRGGGGNFGPGPGSNFRGGS--DGYGSGRGFG 241
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+ G G G G GG SP YGG GYG G + GG N G
Sbjct: 242 DGYNGYGGGPGGGNFGG-SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 300
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
N G+ + + +G+ + N P G G G +G S
Sbjct: 301 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351
Score = 196 (74.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKP 105
Score = 90 (36.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 37/124 (29%), Positives = 52/124 (41%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNSLGYGRMLGPFPGG-NSNRFSTP 295
+GRGG FG + G G N G ++ GGS + + G+G + GG F
Sbjct: 201 SGRGGNFGFGDSRGGGG-NFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 259
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSV---N 352
G+ GG RG + G G N G + GSGN+ FGN + N
Sbjct: 260 PGYGGG--RGGYGGGGPGYGNQGGGYGGGYDNYGG-GNY---GSGNYN-DFGNYNQQPSN 312
Query: 353 WGPV 356
+GP+
Sbjct: 313 YGPM 316
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 122/363 (33%), Positives = 184/363 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 32 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 91
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 92 SARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 140
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
++YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 141 REYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 200
Query: 183 PKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGG 242
K+ S G + F N N G FG R + G G
Sbjct: 201 SKQEMQTASSQRGRGGGSGNFMGRGNFGGGGG---NFGRGGNFGGR--GGYGGGGGGGGS 255
Query: 243 ISPFGGA-GY-GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPF---PGGNSNRFSTPV- 296
FGG GY G G ++ GG +YGG + + GYG GP PGG
Sbjct: 256 RGSFGGGDGYNGFG-DVKGG---NYGGGPGYGSRGGYGGGGGPGYGNPGGGYGGGGGGYD 311
Query: 297 GFS-GGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPG-AFLGSGSGN-FEVSFGNNSV 351
G++ GGN G + S +N +GN G S P G +F G SG+ + +G+ S
Sbjct: 312 GYNEGGNFGGGNYGGSGNYNDFGNYSGQQQSNYGPMKGGGSFGGRSSGSPYGGGYGSGSG 371
Query: 352 NWG 354
+ G
Sbjct: 372 SGG 374
Score = 225 (84.3 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 43/107 (40%), Positives = 67/107 (62%)
Query: 84 DDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNT 143
+D R +S H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D T
Sbjct: 11 EDYKRKGRRSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQT 70
Query: 144 QRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
+R RGFGF+TY E VD + H+++G++VE KRAV +E S P
Sbjct: 71 KRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 117
Score = 56 (24.8 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 197 GYNNFGFNRPTNLLN-SFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGM 255
GY+ G+N N ++ N + G + + S + P+ +GG S FGG G
Sbjct: 309 GYD--GYNEGGNFGGGNYGGSGNYNDFGNYSGQQQSNYGPM---KGGGS-FGGRSSG--- 359
Query: 256 NLDGGLSPSYGGSSNFSNSLGYG 278
SP GG + S S GYG
Sbjct: 360 ------SPYGGGYGSGSGSGGYG 376
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 114/351 (32%), Positives = 167/351 (47%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S+ T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 70 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF ++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV++A+ +
Sbjct: 119 YFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S S G NFGF +S N P G R S +GRG
Sbjct: 179 QEMQEVQSSRSGRG-GNFGFG------DSRGGGGNFGPGPGSNFRGGS--DGYGSGRGFG 229
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+ G G G G GG SP YGG GYG G + GG N G
Sbjct: 230 DGYNGYGGGPGGGNFGG-SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 288
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
N G+ + + +G+ + N P G G G +G S
Sbjct: 289 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
Score = 196 (74.1 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKP 93
Score = 90 (36.7 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 37/124 (29%), Positives = 52/124 (41%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNSLGYGRMLGPFPGG-NSNRFSTP 295
+GRGG FG + G G N G ++ GGS + + G+G + GG F
Sbjct: 189 SGRGGNFGFGDSRGGGG-NFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 247
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSV---N 352
G+ GG RG + G G N G + GSGN+ FGN + N
Sbjct: 248 PGYGGG--RGGYGGGGPGYGNQGGGYGGGYDNYGG-GNY---GSGNYN-DFGNYNQQPSN 300
Query: 353 WGPV 356
+GP+
Sbjct: 301 YGPM 304
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 109/304 (35%), Positives = 158/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 225 (84.3 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 89 (36.4 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 41/127 (32%), Positives = 53/127 (41%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N ++ G G
Sbjct: 208 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYN 261
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGN 341
F GN N S+ G GGN G S +G G A P + G + GS S +
Sbjct: 262 DF--GNYNNQSSNFGPMKGGNFGGRSS------GPYGGGGQYFA-KPRNQGGYGGSSSSS 312
Query: 342 FEVSFGN 348
S+G+
Sbjct: 313 ---SYGS 316
Score = 83 (34.3 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 34/87 (39%), Positives = 41/87 (47%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR-GGIS--PFGGAG-YG 252
GYN FG N +N + YN G + S F P+ G GG S P+GG G Y
Sbjct: 243 GYNGFG-NDGSNFGGGGS--YN--DFGNYN-NQSSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 253 VGMNLDGGLSPSYGGSSNFSNSLGYGR 279
GG YGGSS+ S+S G GR
Sbjct: 297 AKPRNQGG----YGGSSS-SSSYGSGR 318
Score = 81 (33.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 74 (31.1 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 35/130 (26%), Positives = 47/130 (36%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G + S S G +G G N GG +GG+ NF
Sbjct: 165 QKYHT--VNGHNCEVRKALSKQEMASASSSQRGRSGSG---NFGGGRGGGFGGNDNFGRG 219
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G G + + N G GS N N + +
Sbjct: 220 GNFSGR--GGFGGSRGG------GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSS 271
Query: 334 FLGS-GSGNF 342
G GNF
Sbjct: 272 NFGPMKGGNF 281
Score = 41 (19.5 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 109/304 (35%), Positives = 158/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 225 (84.3 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 89 (36.4 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 41/127 (32%), Positives = 53/127 (41%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N ++ G G
Sbjct: 208 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYN 261
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGN 341
F GN N S+ G GGN G S +G G A P + G + GS S +
Sbjct: 262 DF--GNYNNQSSNFGPMKGGNFGGRSS------GPYGGGGQYFA-KPRNQGGYGGSSSSS 312
Query: 342 FEVSFGN 348
S+G+
Sbjct: 313 ---SYGS 316
Score = 83 (34.3 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 34/87 (39%), Positives = 41/87 (47%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR-GGIS--PFGGAG-YG 252
GYN FG N +N + YN G + S F P+ G GG S P+GG G Y
Sbjct: 243 GYNGFG-NDGSNFGGGGS--YN--DFGNYN-NQSSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 253 VGMNLDGGLSPSYGGSSNFSNSLGYGR 279
GG YGGSS+ S+S G GR
Sbjct: 297 AKPRNQGG----YGGSSS-SSSYGSGR 318
Score = 81 (33.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 74 (31.1 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 35/130 (26%), Positives = 47/130 (36%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G + S S G +G G N GG +GG+ NF
Sbjct: 165 QKYHT--VNGHNCEVRKALSKQEMASASSSQRGRSGSG---NFGGGRGGGFGGNDNFGRG 219
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G G + + N G GS N N + +
Sbjct: 220 GNFSGR--GGFGGSRGG------GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSS 271
Query: 334 FLGS-GSGNF 342
G GNF
Sbjct: 272 NFGPMKGGNF 281
Score = 41 (19.5 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 109/304 (35%), Positives = 158/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 225 (84.3 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 89 (36.4 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 41/127 (32%), Positives = 53/127 (41%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N ++ G G
Sbjct: 208 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYN 261
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGN 341
F GN N S+ G GGN G S +G G A P + G + GS S +
Sbjct: 262 DF--GNYNNQSSNFGPMKGGNFGGRSS------GPYGGGGQYFA-KPRNQGGYGGSSSSS 312
Query: 342 FEVSFGN 348
S+G+
Sbjct: 313 ---SYGS 316
Score = 83 (34.3 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 34/87 (39%), Positives = 41/87 (47%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR-GGIS--PFGGAG-YG 252
GYN FG N +N + YN G + S F P+ G GG S P+GG G Y
Sbjct: 243 GYNGFG-NDGSNFGGGGS--YN--DFGNYN-NQSSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 253 VGMNLDGGLSPSYGGSSNFSNSLGYGR 279
GG YGGSS+ S+S G GR
Sbjct: 297 AKPRNQGG----YGGSSS-SSSYGSGR 318
Score = 81 (33.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 74 (31.1 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 35/130 (26%), Positives = 47/130 (36%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G + S S G +G G N GG +GG+ NF
Sbjct: 165 QKYHT--VNGHNCEVRKALSKQEMASASSSQRGRSGSG---NFGGGRGGGFGGNDNFGRG 219
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G G + + N G GS N N + +
Sbjct: 220 GNFSGR--GGFGGSRGG------GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSS 271
Query: 334 FLGS-GSGNF 342
G GNF
Sbjct: 272 NFGPMKGGNF 281
Score = 41 (19.5 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 109/304 (35%), Positives = 158/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 225 (84.3 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 89 (36.4 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 41/127 (32%), Positives = 53/127 (41%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N ++ G G
Sbjct: 208 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYN 261
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGN 341
F GN N S+ G GGN G S +G G A P + G + GS S +
Sbjct: 262 DF--GNYNNQSSNFGPMKGGNFGGRSS------GPYGGGGQYFA-KPRNQGGYGGSSSSS 312
Query: 342 FEVSFGN 348
S+G+
Sbjct: 313 ---SYGS 316
Score = 83 (34.3 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 34/87 (39%), Positives = 41/87 (47%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR-GGIS--PFGGAG-YG 252
GYN FG N +N + YN G + S F P+ G GG S P+GG G Y
Sbjct: 243 GYNGFG-NDGSNFGGGGS--YN--DFGNYN-NQSSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 253 VGMNLDGGLSPSYGGSSNFSNSLGYGR 279
GG YGGSS+ S+S G GR
Sbjct: 297 AKPRNQGG----YGGSSS-SSSYGSGR 318
Score = 81 (33.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 74 (31.1 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 35/130 (26%), Positives = 47/130 (36%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G + S S G +G G N GG +GG+ NF
Sbjct: 165 QKYHT--VNGHNCEVRKALSKQEMASASSSQRGRSGSG---NFGGGRGGGFGGNDNFGRG 219
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G G + + N G GS N N + +
Sbjct: 220 GNFSGR--GGFGGSRGG------GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSS 271
Query: 334 FLGS-GSGNF 342
G GNF
Sbjct: 272 NFGPMKGGNF 281
Score = 41 (19.5 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 109/304 (35%), Positives = 158/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 225 (84.3 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 89 (36.4 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 41/127 (32%), Positives = 53/127 (41%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N ++ G G
Sbjct: 208 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYN 261
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGN 341
F GN N S+ G GGN G S +G G A P + G + GS S +
Sbjct: 262 DF--GNYNNQSSNFGPMKGGNFGGRSS------GPYGGGGQYFA-KPRNQGGYGGSSSSS 312
Query: 342 FEVSFGN 348
S+G+
Sbjct: 313 ---SYGS 316
Score = 83 (34.3 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 34/87 (39%), Positives = 41/87 (47%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR-GGIS--PFGGAG-YG 252
GYN FG N +N + YN G + S F P+ G GG S P+GG G Y
Sbjct: 243 GYNGFG-NDGSNFGGGGS--YN--DFGNYN-NQSSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 253 VGMNLDGGLSPSYGGSSNFSNSLGYGR 279
GG YGGSS+ S+S G GR
Sbjct: 297 AKPRNQGG----YGGSSS-SSSYGSGR 318
Score = 81 (33.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 74 (31.1 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 35/130 (26%), Positives = 47/130 (36%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G + S S G +G G N GG +GG+ NF
Sbjct: 165 QKYHT--VNGHNCEVRKALSKQEMASASSSQRGRSGSG---NFGGGRGGGFGGNDNFGRG 219
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G G + + N G GS N N + +
Sbjct: 220 GNFSGR--GGFGGSRGG------GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSS 271
Query: 334 FLGS-GSGNF 342
G GNF
Sbjct: 272 NFGPMKGGNF 281
Score = 41 (19.5 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 109/304 (35%), Positives = 158/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGNNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 225 (84.3 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 94 (38.1 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 42/127 (33%), Positives = 53/127 (41%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N N+ G G
Sbjct: 208 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGNNFGGGGSYN 261
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGN 341
F GN N S+ G GGN G S +G G A P + G + GS S +
Sbjct: 262 DF--GNYNNQSSNFGPMKGGNFGGRSS------GPYGGGGQYFA-KPRNQGGYGGSSSSS 312
Query: 342 FEVSFGN 348
S+G+
Sbjct: 313 ---SYGS 316
Score = 80 (33.2 bits), Expect = 5.7e-22, Sum P(2) = 5.7e-22
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGNN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 73 (30.8 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 35/130 (26%), Positives = 47/130 (36%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G + S S G +G G N GG +GG+ NF
Sbjct: 165 QKYHT--VNGHNCEVRKALSKQEMASASSSQRGRSGSG---NFGGGRGGGFGGNDNFGRG 219
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G G + + N G GS N N + +
Sbjct: 220 GNFSGR--GGFGGSRGG------GGYGGSGDGYNGFGNDGNNFGGGGSYNDFGNYNNQSS 271
Query: 334 FLGS-GSGNF 342
G GNF
Sbjct: 272 NFGPMKGGNF 281
Score = 40 (19.1 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G N S G+YN
Sbjct: 239 GSGDGYNGFGNDGNNFGGGGSYNDFGNYN 267
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 109/304 (35%), Positives = 158/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 225 (84.3 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 82 (33.9 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 31/86 (36%), Positives = 37/86 (43%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N ++ G G
Sbjct: 208 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYN 261
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDS 307
F GN N S+ G GGN G S
Sbjct: 262 DF--GNYNNQSSNFGPMKGGNFGGRS 285
Score = 81 (33.6 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 74 (31.1 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 35/130 (26%), Positives = 47/130 (36%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G + S S G +G G N GG +GG+ NF
Sbjct: 165 QKYHT--VNGHNCEVRKALSKQEMASASSSQRGRSGSG---NFGGGRGGGFGGNDNFGRG 219
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G G + + N G GS N N + +
Sbjct: 220 GNFSGR--GGFGGSRGG------GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSS 271
Query: 334 FLGS-GSGNF 342
G GNF
Sbjct: 272 NFGPMKGGNF 281
Score = 41 (19.5 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 109/304 (35%), Positives = 158/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 225 (84.3 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 82 (33.9 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
Identities = 31/86 (36%), Positives = 37/86 (43%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N ++ G G
Sbjct: 208 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYN 261
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDS 307
F GN N S+ G GGN G S
Sbjct: 262 DF--GNYNNQSSNFGPMKGGNFGGRS 285
Score = 81 (33.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 74 (31.1 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 35/130 (26%), Positives = 47/130 (36%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G + S S G +G G N GG +GG+ NF
Sbjct: 165 QKYHT--VNGHNCEVRKALSKQEMASASSSQRGRSGSG---NFGGGRGGGFGGNDNFGRG 219
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G G + + N G GS N N + +
Sbjct: 220 GNFSGR--GGFGGSRGG------GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSS 271
Query: 334 FLGS-GSGNF 342
G GNF
Sbjct: 272 NFGPMKGGNF 281
Score = 41 (19.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 115/321 (35%), Positives = 166/321 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D +VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSRGGGGYG 238
Query: 239 GRG-GISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGY-------GRMLGPFPGGNSN 290
G G G + FG G G GG +G +N S++ G GR LGP+ GG
Sbjct: 239 GSGDGYNGFGNDGSNFG---GGGSYNDFGNYNNQSSNFGPMKGGNFGGRSLGPY-GGGGQ 294
Query: 291 RFSTPVGFSGGNGRGDSVLSS 311
F+ P GG G G S SS
Sbjct: 295 YFAKPRN-QGGYG-GSSSSSS 313
Score = 225 (84.3 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 81 (33.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 77 (32.2 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 38/142 (26%), Positives = 52/142 (36%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G + S S G +G G N GG +GG+ NF
Sbjct: 165 QKYHT--VNGHNCEVRKALSKQEMASASSSQRGRSGSG---NFGGGRGGGFGGNDNFGRG 219
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G G + + N G GS N N + +
Sbjct: 220 GNFSGR--GGFGGSRGG------GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSS 271
Query: 334 FLGSGSGNFEVSFGNNSVNWGP 355
G G +FG S+ GP
Sbjct: 272 NFGPMKGG---NFGGRSL--GP 288
Score = 41 (19.5 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 109/350 (31%), Positives = 167/350 (47%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 77
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 78 RPHTIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 126
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV++A+ +
Sbjct: 127 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 186
Query: 185 EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGIS 244
+ S NFGF ++ N P G R + +GRG
Sbjct: 187 QEMQEVQNSRSGRGGNFGFG------DARGGGGNFGPGPGSNFRGGA--DGYGSGRGFGD 238
Query: 245 PFGGAGYGVGMNLDGGLSPSYGGSSNF--SNSLGYGRMLGPFPGGNSNRFSTPVGFSGGN 302
+ G G G G GG SP YGG GYG G + GG N G N
Sbjct: 239 GYNGYGGGPGGGNFGG-SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYN 297
Query: 303 GRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
G+ + + +G+ + N P G G G +G S
Sbjct: 298 DFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 347
Score = 195 (73.7 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 77 ARPHTIDGRVVEPKRAVAREESGKP 101
Score = 90 (36.7 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 37/124 (29%), Positives = 52/124 (41%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNSLGYGRMLGPFPGG-NSNRFSTP 295
+GRGG FG A G G N G ++ GG+ + + G+G + GG F
Sbjct: 197 SGRGGNFGFGDARGGGG-NFGPGPGSNFRGGADGYGSGRGFGDGYNGYGGGPGGGNFGGS 255
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSV---N 352
G+ GG RG + G G N G + GSGN+ FGN + N
Sbjct: 256 PGYGGG--RGGYGGGGPGYGNQGGGYGGGYDNYGG-GNY---GSGNYN-DFGNYNQQPSN 308
Query: 353 WGPV 356
+GP+
Sbjct: 309 YGPM 312
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 109/304 (35%), Positives = 158/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 CKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 225 (84.3 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 89 (36.4 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 41/127 (32%), Positives = 53/127 (41%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N ++ G G
Sbjct: 208 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYN 261
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGN 341
F GN N S+ G GGN G S +G G A P + G + GS S +
Sbjct: 262 DF--GNYNNQSSNFGPMKGGNFGGRSS------GPYGGGGQYFA-KPRNQGGYGGSSSSS 312
Query: 342 FEVSFGN 348
S+G+
Sbjct: 313 ---SYGS 316
Score = 83 (34.3 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 34/87 (39%), Positives = 41/87 (47%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR-GGIS--PFGGAG-YG 252
GYN FG N +N + YN G + S F P+ G GG S P+GG G Y
Sbjct: 243 GYNGFG-NDGSNFGGGGS--YN--DFGNYN-NQSSNFGPMKGGNFGGRSSGPYGGGGQYF 296
Query: 253 VGMNLDGGLSPSYGGSSNFSNSLGYGR 279
GG YGGSS+ S+S G GR
Sbjct: 297 AKPRNQGG----YGGSSS-SSSYGSGR 318
Score = 81 (33.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 242 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 73 (30.8 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 30/98 (30%), Positives = 39/98 (39%)
Query: 247 GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRG 305
G +G G N GG +GG+ NF + GR G F G G GG+G G
Sbjct: 195 GRSGSG---NFGGGRGGGFGGNDNFGRGGNFSGR--GGFGGSRGG------GGYGGSGDG 243
Query: 306 DSVLSSTTWNVWGNGSLNSATNPASPGAFLGS-GSGNF 342
+ + N G GS N N + + G GNF
Sbjct: 244 YNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNF 281
Score = 41 (19.5 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 107/304 (35%), Positives = 156/304 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 -MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NTTPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H + G EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
PK+ S S+ G NFG R ++F + N S GGFG +
Sbjct: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGG---------SC 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPV 296
G GG +GG+G G G DG G ++F N GP GGN R S P
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Query: 297 GFSG 300
G G
Sbjct: 290 GGGG 293
Score = 230 (86.0 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 44/94 (46%), Positives = 67/94 (71%)
Query: 98 SSPG-PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
+SP P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY +
Sbjct: 5 ASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
E VD ++ T H+++G++VE KRAV +E S P
Sbjct: 65 VEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRP 98
Score = 89 (36.4 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 34/106 (32%), Positives = 49/106 (46%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGF 298
GR G FGG G G G GG + ++G NFS G+G G GG + G+
Sbjct: 195 GRRGSGNFGG-GRGDGF---GG-NDNFGRGGNFSGRGGFGGSCG---GGGYG--GSGDGY 244
Query: 299 SGGNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNF 342
+G G + ++N +GN + N ++N P G F G SG +
Sbjct: 245 NGFGNDGSNFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSGPY 289
Score = 78 (32.5 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 33/90 (36%), Positives = 39/90 (43%)
Query: 267 GSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSAT 326
GS NF G G F GGN N F FSG G G S + G+G N
Sbjct: 198 GSGNFGGGRGDG-----F-GGNDN-FGRGGNFSGRGGFGGSC-GGGGYGGSGDG-YNGFG 248
Query: 327 NPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
N S F G GS N ++ N S N+GP+
Sbjct: 249 NDGSN--FGGGGSYNDFGNYNNQSSNFGPM 276
Score = 41 (19.5 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 115/350 (32%), Positives = 171/350 (48%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+ + T +E LK +F ++G +V+ V+M+D T R+RGFGF+ ++ ++ +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AVPR D + SP G T KK+FVG L E +
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDID-----------SPNAGATVKKLFVGALKDDHDEQSIRD 140
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF FG I D+ ++ D T + RGF F+ +D + VD+V+ + H+LNGKMV+VK+A+PK
Sbjct: 141 YFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
Query: 185 EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGIS 244
+ + G G N N Y GG ++ + RGG
Sbjct: 201 Q---NDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGG---NWNNGGNNWGNNRGGND 254
Query: 245 PFGGAGYGVGMNLDGGLSPSYGGSSNF---SNSLGYGRMLGPFPGGNSNRFSTPVGFSGG 301
+G +G G GG YGG +N +N G G F GG N ++ +GG
Sbjct: 255 NWGNNSFGGG----GGGGGGYGGGNNSWGNNNPWDNGNGGGNF-GGGGNNWN-----NGG 304
Query: 302 NGRGDSVLSSTTWNVWGNGSLNS-ATNPASPGAFLGSGSGNFEVSFGNNS 350
N G + G G+ N+ P G +G GN + ++G N+
Sbjct: 305 NDFGGYQQNYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGN-QGNYGGNN 353
Score = 207 (77.9 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 38/95 (40%), Positives = 59/95 (62%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P +K+F+GGL T+ + K +F+++G I DVVVM D T+R RGFGFITY +D
Sbjct: 27 PEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMID 86
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMI 196
H+++G++VE KRAVP++ P+ + +
Sbjct: 87 EAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATV 121
Score = 85 (35.0 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 37/117 (31%), Positives = 47/117 (40%)
Query: 197 GYNNFGFNRPTNLL---NSFAQRYNLSPAGGFGVRMDS--RFSPLATGRGGISPFGGAG- 250
G NN+G NR N NSF GG+G +S +P G GG FGG G
Sbjct: 242 GGNNWGNNRGGNDNWGNNSFGG--GGGGGGGYGGGNNSWGNNNPWDNGNGG-GNFGGGGN 298
Query: 251 -YGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTP-VGFSGGNGRG 305
+ G N GG +YGG + P+ GG + G GGN +G
Sbjct: 299 NWNNGGNDFGGYQQNYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQG 355
Score = 57 (25.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 24/83 (28%), Positives = 33/83 (39%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMN 256
G NN+ N N + Q Y P G G ++R P GG G+ G
Sbjct: 296 GGNNW--NNGGNDFGGYQQNYGGGPQRGGGNFNNNRMQPYQ---------GGGGFKAG-- 342
Query: 257 LDGGLSPSYGGSSNFSNSLGYGR 279
GG +YGG++ N+ G R
Sbjct: 343 --GGNQGNYGGNNQGFNNGGNNR 363
Score = 37 (18.1 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 427 TWRSATPELDGSGSFSYGLGTVSTNVAAKSSEGFIGSY 464
+W + P +G+G ++G G + N G+ +Y
Sbjct: 277 SWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNY 314
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 77/161 (47%), Positives = 110/161 (68%)
Query: 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM 65
GK+FIGG++W+T ++ LKEYFS++GEV E +MRD ATGR+RGFGF+ F DP V++
Sbjct: 110 GKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMV 169
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +DG+ ++ K+A+PRD+Q +T KIFVGG++ TE DFK++
Sbjct: 170 KEHYLDGKIIDPKRAIPRDEQE----------------KTSKIFVGGVSQEATEQDFKQF 213
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166
F QFG + D +M D +T RPRGFGF+T+DSE AV+ L +
Sbjct: 214 FMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Score = 225 (84.3 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163
+T KIFVGG++ TE DFK++F QFG + D +M D +T RPRGFGF+T+DSE AV+
Sbjct: 192 KTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAA 251
Query: 164 LHKTFHELNGKMVEVKRAVPK 184
L + E+ GK +EVK+A P+
Sbjct: 252 LSRPL-EILGKTIEVKKAQPR 271
Score = 184 (69.8 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GG+S + E+ K++F ++G V++A +M D+ TGR RGFGFV F A E +
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 67 KHMIDGRTVEAKKAVPR 83
I G+T+E KKA PR
Sbjct: 255 PLEILGKTIEVKKAQPR 271
Score = 182 (69.1 bits), Expect = 7.6e-11, P = 7.6e-11
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 85 DQNMLNRNTSSIHSSPGPGRTK-----KIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
D N+ T + P P T K+F+GGL T+ K+YF QFG + + VM
Sbjct: 85 DSGYNNQTTGPV-GEPEPQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMR 143
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
D T R RGFGF+T+ + V+ V+ K H L+GK+++ KRA+P++
Sbjct: 144 DSATGRSRGFGFLTFKDPKTVNTVMVKE-HYLDGKIIDPKRAIPRD 188
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 107/282 (37%), Positives = 156/282 (55%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGR 279
G GG +GG+G G G DGG YGGSS+ S+S G GR
Sbjct: 233 GGGG---YGGSGDGYNGFGNDGG----YGGSSS-SSSYGSGR 266
Score = 225 (84.3 bits), Expect = 7.2e-24, Sum P(2) = 7.2e-24
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 76 (31.8 bits), Expect = 7.2e-24, Sum P(2) = 7.2e-24
Identities = 27/75 (36%), Positives = 36/75 (48%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFP-GGNSNRFSTPVG 297
GR G FGG G G G GG + ++G NFS G+G G GG+ + ++ G
Sbjct: 195 GRSGSGNFGG-GRGGGF---GG-NDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYN---G 246
Query: 298 FSGGNGRGDSVLSST 312
F G G S SS+
Sbjct: 247 FGNDGGYGGSSSSSS 261
Score = 70 (29.7 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 29/83 (34%), Positives = 34/83 (40%)
Query: 212 SFAQRYNLSPAGGFGVRMDSRFSPLAT-GRGGISPFGG-AGYGVGMNLDGGLSPSYGGSS 269
S +QR S +G FG F GRGG F G G+G G GG S G +
Sbjct: 190 SSSQR-GRSGSGNFGGGRGGGFGGNDNFGRGG--NFSGRGGFG-GSRGGGGYGGSGDGYN 245
Query: 270 NFSNSLGYGRMLGPFPGGNSNRF 292
F N GYG G+ RF
Sbjct: 246 GFGNDGGYGGSSSSSSYGSGRRF 268
Score = 67 (28.6 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 28/83 (33%), Positives = 37/83 (44%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGN-GSLNSATNPASPGA 333
+N +GN G +++ +S G+
Sbjct: 242 DGYNGFGNDGGYGGSSSSSSYGS 264
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 113/315 (35%), Positives = 162/315 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
K+ S S+ G NFG R ++F + N S GGFG SR
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------ 232
Query: 239 GRGGISPFGGA--GYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPV 296
G GG GG+ +G N P GG NF GR GP+ GG F+ P
Sbjct: 233 GGGGYGGSGGSYNDFGNYNNQSSNFGPMKGG--NFG-----GRSSGPY-GGGGQYFAKPR 284
Query: 297 GFSGGNGRGDSVLSS 311
GG G G S SS
Sbjct: 285 N-QGGYG-GSSSSSS 297
Score = 225 (84.3 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 80 (33.2 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 33/93 (35%), Positives = 42/93 (45%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 198 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 241
Query: 312 TTWNVWGNGSLNSATN--PASPGAFLGSGSGNF 342
++N +GN + N ++N P G F G SG +
Sbjct: 242 GSYNDFGNYN-NQSSNFGPMKGGNFGGRSSGPY 273
Score = 54 (24.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 288 NSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEV--S 345
+S R + G GG GRG + + GN S + G G G++ +
Sbjct: 191 SSQRGRSGSGNFGG-GRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGGSYNDFGN 249
Query: 346 FGNNSVNWGPV 356
+ N S N+GP+
Sbjct: 250 YNNQSSNFGPM 260
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 387 (141.3 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 85/189 (44%), Positives = 116/189 (61%)
Query: 20 ERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78
E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V+ +H +D +T++ K
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 79 KAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVM 138
A PR Q + RTKKIFVGGL+ T D K YF+QFG + D ++M
Sbjct: 61 VAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 108
Query: 139 YDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE-FSPGPS---RSS 194
+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A PKE SP S RS
Sbjct: 109 FDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSR 168
Query: 195 MIGYNNFGF 203
++ Y F
Sbjct: 169 VMPYGMDAF 177
Score = 175 (66.7 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+F+GG+S +T E +K YF ++G+V +A++M D+ T R RGFGFV F + E+V +
Sbjct: 77 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 66 DKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
Score = 42 (19.8 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGY 277
A GR + P+G + G+GM G + +Y S + GY
Sbjct: 163 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 206
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 109/315 (34%), Positives = 163/315 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 12 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 71
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 72 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 120
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 121 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 180
Query: 183 PKEF--SPGPSRSSMIGYNNFGFNRPTNLLN---SFAQRYNLSPAGGFGVRMDSRFSPLA 237
K+ S G R G NF R N +F + N G+ R
Sbjct: 181 SKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNYGGGPGYSSRGGYGGGGPG 239
Query: 238 TGR--GGISPFGGA-GYGVGMNLDGGLSPSYGGSSNFSNSLGY-GRM---LGPFPGGNSN 290
G GG GG GY G N GG +YGG N+++ Y G+ GP GG+
Sbjct: 240 YGNQGGGYGGGGGYDGYNEGGNFGGG---NYGGGGNYNDFGNYSGQQQSNYGPMKGGSFG 296
Query: 291 RFSTPVGFSGGNGRG 305
S+ + GG G G
Sbjct: 297 GRSSGSPYGGGYGSG 311
Score = 213 (80.0 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 40/94 (42%), Positives = 62/94 (65%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY
Sbjct: 4 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 63
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 64 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 97
Score = 111 (44.1 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 37/121 (30%), Positives = 51/121 (42%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS-LGYGRMLGPFPGGNS-NRFSTPV 296
GRGG GG +G G N GG P Y + GYG G + GG + ++
Sbjct: 203 GRGGNFGGGGGNFGRGGNYGGG--PGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGG 260
Query: 297 GFSGGNGRGDSVLSSTTWNVWGN--GSLNSATNPASPGAFLGSGSGN-FEVSFGNNSVNW 353
F GGN G +N +GN G S P G+F G SG+ + +G+ +
Sbjct: 261 NFGGGNYGGGG-----NYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSG 315
Query: 354 G 354
G
Sbjct: 316 G 316
Score = 39 (18.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 336 GSGSGNFEV---SFGNNSVNWG 354
G GSGNF +FG N+G
Sbjct: 195 GGGSGNFMGRGGNFGGGGGNFG 216
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 108/316 (34%), Positives = 161/316 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T E+ L+ +F ++G++ + V+MRD A R+RGFGFV ++ + + +
Sbjct: 12 LRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAM 71
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D N PG T KKIFVGG+ E
Sbjct: 72 TARPHKVDGRVVEPKRAVSREDSN-----------KPGAHLTVKKIFVGGIKEDTEEYHI 120
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
++YF+ +G I + +M + +T + RGF F+T+D + VD+++ + +H +N EV++A+
Sbjct: 121 REYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKAL 180
Query: 183 PKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQR-YNLSPAGG-----FGVRMDSRFSPL 236
PK+ S Y G T +F + Y GG FG
Sbjct: 181 PKQEMQSSSNQR---YRGGGGGNFTGRGGNFGRGGYGGGRGGGDGYNGFGGNYGGGPGGY 237
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSP--SYGGS-SNFS----NSLGYGRMLGPFPGGNS 289
GRGG FGG G G G + +YGG SNF N+ G GR GP+ GG
Sbjct: 238 GGGRGGYGNFGGGGGSSGGGGGGNYNDFGNYGGQQSNFGPMKGNNFG-GRNSGPYGGGG- 295
Query: 290 NRFSTPVGFSGGNGRG 305
+ + G GG G G
Sbjct: 296 --YGSGGG-GGGGGYG 308
Score = 203 (76.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 99 SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
S P + +K+F+GGL+ TE + +F+Q+G +TD VVM D +R RGFGF+TY S
Sbjct: 6 SKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVS 65
Query: 159 AVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
VD + H+++G++VE KRAV +E S P
Sbjct: 66 EVDAAMTARPHKVDGRVVEPKRAVSREDSNKP 97
Score = 89 (36.4 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 40/109 (36%), Positives = 46/109 (42%)
Query: 238 TGRGGISPFGGAGYGVGMNL-DG--GLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFST 294
TGRGG FG GYG G DG G +YGG GYG G + GN F
Sbjct: 202 TGRGG--NFGRGGYGGGRGGGDGYNGFGGNYGGGPG-----GYGGGRGGY--GN---FGG 249
Query: 295 PVGFSGGNGRGDSVLSSTTWNVWGN-GSLNSATNPASPGAFLGSGSGNF 342
G SGG G G+ +N +GN G S P F G SG +
Sbjct: 250 GGGSSGGGGGGN-------YNDFGNYGGQQSNFGPMKGNNFGGRNSGPY 291
Score = 61 (26.5 bits), Expect = 8.4e-17, Sum P(2) = 8.4e-17
Identities = 28/95 (29%), Positives = 36/95 (37%)
Query: 266 GGSSNFSNSLG-YGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSL-N 323
GG NF+ G +GR G + GG GF G G G G G N
Sbjct: 196 GGGGNFTGRGGNFGR--GGYGGGRGGGDGYN-GFGGNYGGGPGGYGG------GRGGYGN 246
Query: 324 SATNPASPGAFLGSGSGNFEV--SFGNNSVNWGPV 356
S G G G GN+ ++G N+GP+
Sbjct: 247 FGGGGGSSG---GGGGGNYNDFGNYGGQQSNFGPM 278
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 113/312 (36%), Positives = 163/312 (52%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 81 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 129
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV++A+ +
Sbjct: 130 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRG-- 241
E S S G NFGF +S N P G R S +GRG
Sbjct: 190 QEMQEVQSSRSGRG-GNFGFG------DSRGGGGNFGPGPGSNFRGGS--DGYGSGRGFG 240
Query: 242 -GISPFGGA---GYGVGMNLDGG---LSPS-YGG--SSNFSNSLGYGRMLGPFPGGNSNR 291
G + +GG YG G D G PS YG S NF S G GP+ GGN
Sbjct: 241 DGYNGYGGGPGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMG---GPYGGGNYG- 296
Query: 292 FSTPVGFSGGNG 303
P G SGG+G
Sbjct: 297 ---PGG-SGGSG 304
Score = 196 (74.1 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+G +TD VVM D ++R RGFGF+T+ S VD +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKP 104
Score = 86 (35.3 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 32/99 (32%), Positives = 43/99 (43%)
Query: 266 GGSSNFSNSLGYGRMLGPFPGGN----SNRFSTPVGFSGG-NGRGDSV---LSSTTWNVW 317
GG+ F +S G G GP PG N S+ + + GF G NG G S +N +
Sbjct: 203 GGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGNYGSGNYNDF 262
Query: 318 GNGSLNSAT-NPASPGAFLGSGSGNFEVSFGNNSVNWGP 355
GN + + P G F GS N +G N+GP
Sbjct: 263 GNYNQQPSNYGPMKSGNF--GGSRNMGGPYGGG--NYGP 297
Score = 83 (34.3 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 34/94 (36%), Positives = 41/94 (43%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFG-GAGYGVGMN-LDGGLSPSYGGSSNFSNSLGYGRM 280
G FG S F RGG +G G G+G G N GG +YG S N+++ Y +
Sbjct: 216 GNFGPGPGSNF------RGGSDGYGSGRGFGDGYNGYGGGPGGNYG-SGNYNDFGNYNQQ 268
Query: 281 ---LGPFPGGN---SNRFSTPVGFSGGN-GRGDS 307
GP GN S P G GGN G G S
Sbjct: 269 PSNYGPMKSGNFGGSRNMGGPYG--GGNYGPGGS 300
Score = 76 (31.8 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 29/88 (32%), Positives = 39/88 (44%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGIS---- 244
G R GYN +G P N + YN G + + S + P+ +G G S
Sbjct: 234 GSGRGFGDGYNGYG-GGPGG--NYGSGNYN--DFGNYN-QQPSNYGPMKSGNFGGSRNMG 287
Query: 245 -PFGGAGYGVGMNLDGGLSPSYGGSSNF 271
P+GG YG G + GG S YGG S +
Sbjct: 288 GPYGGGNYGPGGS--GG-SGGYGGRSRY 312
Score = 56 (24.8 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 23/76 (30%), Positives = 31/76 (40%)
Query: 282 GPF-PGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSG 340
G F PG SN G+ G G GD +N +G G PG GSG+
Sbjct: 216 GNFGPGPGSNFRGGSDGYGSGRGFGDG------YNGYGGG----------PGGNYGSGNY 259
Query: 341 NFEVSFGNNSVNWGPV 356
N ++ N+GP+
Sbjct: 260 NDFGNYNQQPSNYGPM 275
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 383 (139.9 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 84/189 (44%), Positives = 116/189 (61%)
Query: 20 ERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAK 78
E L+EYF ++GE E ++MRD T R+RGFGFV F D A ++V+ +H +D +T++ K
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 79 KAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVM 138
A PR Q + RTKKIFVGGL+ T D K+YF+QFG + D ++M
Sbjct: 61 VAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 108
Query: 139 YDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE-FSPGPS---RSS 194
+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A PKE SP S RS
Sbjct: 109 FDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSR 168
Query: 195 MIGYNNFGF 203
++ Y F
Sbjct: 169 VMPYGMDAF 177
Score = 177 (67.4 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 34/79 (43%), Positives = 54/79 (68%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+F+GG+S +T E +K+YF ++G+V +A++M D+ T R RGFGFV F + E+V +
Sbjct: 77 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 66 DKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
Score = 42 (19.8 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGY 277
A GR + P+G + G+GM G + +Y S + GY
Sbjct: 163 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 206
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 80/178 (44%), Positives = 112/178 (62%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K FIGG+SWDT EE L +F +YG +V+ IM+D ATGR+RGFGF+ F D + ++ D
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKD 222
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126
+H++DG+ ++ K+A+ ++DQ + KIFVGG+ VTE +F +F
Sbjct: 223 RHVLDGKLIDPKRAISKEDQEKVG----------------KIFVGGIDPMVTEEEFDNFF 266
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
QFG I D +M D +T R RGFGF+TYDS AVD+V + L GK +EVKRA P+
Sbjct: 267 SQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAAPR 324
Score = 196 (74.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 40/94 (42%), Positives = 59/94 (62%)
Query: 92 NTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGF 151
N +S S+ GP R K F+GGL+ TE +F ++G I D +M D T R RGFGF
Sbjct: 150 NATSAESAGGPSR--KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGF 207
Query: 152 ITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
+T++ ++VD +L K H L+GK+++ KRA+ KE
Sbjct: 208 LTFEDAKSVDALL-KDRHVLDGKLIDPKRAISKE 240
Score = 195 (73.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 33/87 (37%), Positives = 58/87 (66%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ +GK+F+GGI EE +FS++G++++ +M D+ TGR+RGFGFV + PA +
Sbjct: 242 QEKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVD 301
Query: 62 RVIMDKHM-IDGRTVEAKKAVPRDDQN 87
+V ++K++ + G+ +E K+A PR N
Sbjct: 302 KVCVNKYLTLKGKAMEVKRAAPRGQHN 328
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 111/316 (35%), Positives = 159/316 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVR-MDSRFSPLATG 239
K+ S S+ G NFG R F N G F R + ++ G
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRG----GGFGGNDNFGRGGNFSGRGIGDGYNGF--G 235
Query: 240 RGGISPFGGAG----YGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTP 295
G S FGG G +G N P GG NF GR GP+ GG F+ P
Sbjct: 236 NDG-SNFGGGGSYNDFGNYNNQSSNFGPMKGG--NFG-----GRSSGPY-GGGGQYFAKP 286
Query: 296 VGFSGGNGRGDSVLSS 311
GG G G S SS
Sbjct: 287 RN-QGGYG-GSSSSSS 300
Score = 225 (84.3 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
Score = 70 (29.7 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 29/98 (29%), Positives = 43/98 (43%)
Query: 247 GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGD 306
G +G G N GG +GG+ NF GR GGN + G++G G
Sbjct: 195 GRSGSG---NFGGGRGGGFGGNDNF------GR------GGNFSGRGIGDGYNGFGNDGS 239
Query: 307 SVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNF 342
+ ++N +GN + N ++N P G F G SG +
Sbjct: 240 NFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSGPY 276
Score = 60 (26.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 24/76 (31%), Positives = 31/76 (40%)
Query: 282 GPFPGGNSNRFSTPVGFS-GGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSG 340
G F GG F F GGN G + +N +GN N F G GS
Sbjct: 200 GNFGGGRGGGFGGNDNFGRGGNFSGRGI--GDGYNGFGNDGSN----------FGGGGSY 247
Query: 341 NFEVSFGNNSVNWGPV 356
N ++ N S N+GP+
Sbjct: 248 NDFGNYNNQSSNFGPM 263
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 109/306 (35%), Positives = 157/306 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 94 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 183 PKEF--SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR 240
K+ S G R G NF R N N G FG R + G
Sbjct: 203 SKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGG---NFGRGGNFGGR--GGYG--GGGG 254
Query: 241 GGISPFGGAGYGVGMNL-DGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFS 299
G +GG YG G N D G +Y G SN YG M G GG S+ G+
Sbjct: 255 GSRGSYGGGNYGGGGNYNDFG---NYSGQQQ-SN---YGPMKGGSFGGRSSGSPYGGGYG 307
Query: 300 GGNGRG 305
G G G
Sbjct: 308 SGGGSG 313
Score = 215 (80.7 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 82 PRDDQNMLNRNTSSI-HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYD 140
P+ D R H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D
Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD 69
Query: 141 HNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
T+R RGFGF+TY E VD + H+++G++VE KRAV +E S P
Sbjct: 70 PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
Score = 82 (33.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 36/113 (31%), Positives = 49/113 (43%)
Query: 247 GGAG--YGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGR 304
GG+G G G N GG ++G NF GYG G GG +R S + GGN
Sbjct: 218 GGSGNFMGRGGNFGGG-GGNFGRGGNFGGRGGYG---G---GGGGSRGS----YGGGNYG 266
Query: 305 GDSVLSSTTWNVWGN--GSLNSATNPASPGAFLGSGSGN-FEVSFGNNSVNWG 354
G +N +GN G S P G+F G SG+ + +G+ + G
Sbjct: 267 GGG-----NYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 314
Score = 39 (18.8 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 336 GSGSGNFEV---SFGNNSVNWG 354
G GSGNF +FG N+G
Sbjct: 217 GGGSGNFMGRGGNFGGGGGNFG 238
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 407 (148.3 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 76/181 (41%), Positives = 114/181 (62%)
Query: 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI- 64
GKLF+GG+SW T ++LKEYF+ +G V + +IM+D T R+RGFGF+ F +P E+V+
Sbjct: 203 GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLK 262
Query: 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKK 124
+ H +DG+ ++ K A P++ N+ TKKIFVGG++ + + K
Sbjct: 263 VPIHTLDGKKIDPKHATPKNRPRQANK-------------TKKIFVGGVSQDTSAEEVKA 309
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF QFG + + V++ D T+R RGFGF+T+++E+ VDRV FH + K VE K+A PK
Sbjct: 310 YFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 369
Query: 185 E 185
E
Sbjct: 370 E 370
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 115/322 (35%), Positives = 170/322 (52%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T EE L+ +F ++G + V+MRD T R+RG GF+++A + +
Sbjct: 13 LWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAM 72
Query: 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFK 123
+ +DGR VE K+AV R+D PG T KKIFVGG+ E +
Sbjct: 73 NARPHVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHLR 121
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
YF+Q+G I + +M D + + +GF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 122 DYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKALS 180
Query: 184 KE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFA--QRYNLSPAGGFGVRMDSRFSPLA 237
K+ S ++ + G NFG R ++F +R N S GGFG S
Sbjct: 181 KQEMASASSTQRDLSGSGNFGGGRGGGFGGNDNFGGGRRRNFSGGGGFGG------SQGG 234
Query: 238 TGRGGISPFGGAGYGV-GMNLDGGLSPS-YGG--SSNFSNSLGY---GRMLGPFPGGNSN 290
G GG S G G+G G N GG S + +G +SNF G GR GP+ GG
Sbjct: 235 GGYGG-SGDGYNGFGNDGSNFGGGGSYNDFGNYNNSNFGPMKGENFGGRSSGPY-GGGGQ 292
Query: 291 RFSTPVGFSGGNGRGDSVLSST 312
F P+ GG GR SV SS+
Sbjct: 293 YFVKPLN-QGGYGR--SVSSSS 311
Score = 199 (75.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 43/97 (44%), Positives = 61/97 (62%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
SS S P + K+F+GGL+ TE + +F+Q+GT TD VVM D NT+R RG GF+
Sbjct: 2 SSPKSPKEPEQLWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLM 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H ++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPH-VDGRVVEPKRAVSREDSQRP 97
Score = 84 (34.6 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 34/93 (36%), Positives = 39/93 (41%)
Query: 267 GSSNFSNSLGYGRMLGP--FPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNS 324
GS NF G G G F GG FS GF G G G S +N +GN N
Sbjct: 196 GSGNFGGGRG-GGFGGNDNFGGGRRRNFSGGGGFGGSQGGGGYGGSGDGYNGFGNDGSN- 253
Query: 325 ATNPASPGAFLGSGSGNFEVSFGN-NSVNWGPV 356
F G GS N FGN N+ N+GP+
Sbjct: 254 ---------FGGGGSYN---DFGNYNNSNFGPM 274
Score = 63 (27.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 36/120 (30%), Positives = 46/120 (38%)
Query: 189 GPSRSSMIGYN-NFGFNRPTNLLNSFAQRYNLSPAGG-FGVRMD--SRFSPLAT---GRG 241
G R G N NFG R N S + S GG +G D + F + G G
Sbjct: 201 GGGRGGGFGGNDNFGGGRRRNF--SGGGGFGGSQGGGGYGGSGDGYNGFGNDGSNFGGGG 258
Query: 242 GISPFGG---AGYGV--GMNLDGGLSPSYGGSSNFS----NSLGYGRMLGPFPGGNSNRF 292
+ FG + +G G N G S YGG + N GYGR + G+ RF
Sbjct: 259 SYNDFGNYNNSNFGPMKGENFGGRSSGPYGGGGQYFVKPLNQGGYGRSVSSSSYGSGRRF 318
Score = 41 (19.5 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
Score = 37 (18.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 430 SATPELDGSGSFSYGLG 446
S +L GSG+F G G
Sbjct: 189 STQRDLSGSGNFGGGRG 205
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 380 (138.8 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 79/185 (42%), Positives = 112/185 (60%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVE 125
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF +FG I + + D + + RGF FIT+ EE V +VL K FH ++G E+K
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKV 228
Query: 181 AVPKE 185
A PKE
Sbjct: 229 AQPKE 233
Score = 178 (67.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 34/93 (36%), Positives = 56/93 (60%)
Query: 96 IHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
I++S K+FVGGL+ ++ D K YF +FG + D + D NT R RGFGFI +
Sbjct: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
Query: 156 SEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+V++VL + H L+G++++ K+A+ + P
Sbjct: 120 DATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
Score = 39 (18.8 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 286 GGNSNRFSTPVGFSGGNGRG 305
GG NR G GG G G
Sbjct: 243 GGRGNRNRGNRGSGGGGGSG 262
Score = 37 (18.1 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 240 RGGISPFGGAGYGVGMNLDGGLSPSYGGSSN 270
RG GG G G + + G S GG N
Sbjct: 250 RGNRGSGGGGGSGGQGSTNYGKSQRRGGHQN 280
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 107/279 (38%), Positives = 149/279 (53%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D A E
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGL-ASTVTE 119
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL + TE
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPESPTE 167
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
++YF +FG I + + D + RGF FIT+ EE V +VL K FH ++G E+K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Query: 180 RAVPKE-FSPGPSRSSMIGYNNFGFNRPTN-------LLNSFAQRYNLSPAGGFGVRMDS 231
A PKE + S G N G NR + S+ Q Y G+G +
Sbjct: 228 VAQPKEVYQQQQYGSGGRGNRNRG-NRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQG- 285
Query: 232 RFSPLATGRGGI--SPFGGAGYGVGMNLDGGLSPSYGGS 268
+ P G GG SP+G GYG G + G S +YG S
Sbjct: 286 -YGP---GYGGYDYSPYGYYGYGPGYDYSQG-STNYGKS 319
Score = 185 (70.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 39/112 (34%), Positives = 62/112 (55%)
Query: 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVV 136
A A P +QN I++S K+FVGGL+ ++ D K YF +FG + D
Sbjct: 42 ATAAPPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT 99
Query: 137 VMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ D NT R RGFGFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 100 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 151
Score = 55 (24.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 22/75 (29%), Positives = 28/75 (37%)
Query: 287 GNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNG-SLNSATNPA------SPGAFLGSGS 339
GN NR + G GG G + N W G P SP + G G
Sbjct: 246 GNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGP 305
Query: 340 GNFEVSFGNNSVNWG 354
G ++ S G S N+G
Sbjct: 306 G-YDYSQG--STNYG 317
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 106/294 (36%), Positives = 156/294 (53%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 8 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 67
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 68 SARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 116
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
++YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 117 REYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 176
Query: 183 PK-EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRG 241
K E S+ G NF R N N G FG R + G G
Sbjct: 177 SKQEMQTASSQRGKGGSGNF-MGRG----NFGGGGGNFGRGGNFGGR--GGYGGGGGGGG 229
Query: 242 GISPFGGA-GY-GVGMNLDGGLSPSYGGSSNFSNSLGY-GRM---LGPFPGGNS 289
FGG GY G G DG +YGGS N+++ Y G+ GP GG S
Sbjct: 230 SRGSFGGGDGYNGFG---DG----NYGGSGNYNDFGNYSGQQQSNYGPMKGGGS 276
Score = 211 (79.3 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 39/89 (43%), Positives = 61/89 (68%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E VD
Sbjct: 5 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 64
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 65 AAMSARPHKVDGRVVEPKRAVSREDSVKP 93
Score = 76 (31.8 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 26/88 (29%), Positives = 35/88 (39%)
Query: 266 GGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLS---STTWNVWGNGSL 322
GGS NF +G G F G F G+ GG G G S S +N +G+G+
Sbjct: 191 GGSGNFMGRGNFGGGGGNF--GRGGNFGGRGGYGGGGGGGGSRGSFGGGDGYNGFGDGNY 248
Query: 323 NSATNPASPGAFLGSGSGNFEVSFGNNS 350
+ N G + G N+ G S
Sbjct: 249 GGSGNYNDFGNYSGQQQSNYGPMKGGGS 276
Score = 73 (30.8 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 26/65 (40%), Positives = 28/65 (43%)
Query: 239 GRGGISPFGG-AGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG 297
GRGG FGG GYG G GG S+GG + N G G G GN N F G
Sbjct: 210 GRGG--NFGGRGGYGGGGG-GGGSRGSFGGGDGY-NGFGDGNYGG---SGNYNDFGNYSG 262
Query: 298 FSGGN 302
N
Sbjct: 263 QQQSN 267
Score = 45 (20.9 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 19/68 (27%), Positives = 27/68 (39%)
Query: 189 GPSRSSM---IGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG-----R 240
G SR S GYN FG ++ N + G + + S + P+ G R
Sbjct: 228 GGSRGSFGGGDGYNGFGDG-------NYGGSGNYNDFGNYSGQQQSNYGPMKGGGSFGGR 280
Query: 241 GGISPFGG 248
SP+GG
Sbjct: 281 SSGSPYGG 288
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 103/308 (33%), Positives = 162/308 (52%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
+L K+F+GG++ +T ++ ++E++S++GE+ + ++MRD T R+RGFGFV F+ +
Sbjct: 21 NLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA 80
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDF 122
+ + H+IDG+TV+ K+AVPRDD+N N S TK+++V G+ TE
Sbjct: 81 MKQRPHIIDGKTVDPKRAVPRDDKNRSESNVS----------TKRLYVSGVREDHTEDML 130
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR-VLHKTFHELNGKMVEVKRA 181
+YF ++GT+T ++ D TQ+PRGFGF+T+D ++VD+ VL K+ H +NG +V++
Sbjct: 131 TEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKS-HMVNGHRCDVRKG 189
Query: 182 VPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDS-RFSPLATGR 240
+ K+ S++ M N R + YN GG G + R P A G
Sbjct: 190 LSKDEM---SKAQM---NRDRETRGGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGG 243
Query: 241 GGISPFGGAG--YGVGMNLDGGLSPS-YGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG 297
G GG G YG G GG +GG G+G+ G GG G
Sbjct: 244 PGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQG 303
Query: 298 FSGGNGRG 305
GG +G
Sbjct: 304 GWGGPQQG 311
Score = 211 (79.3 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P +KIFVGGL S T+ ++++ QFG ITD++VM D T+R RGFGF+T+ + VD
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78
Query: 162 RVLHKTFHELNGKMVEVKRAVPKE 185
+ + H ++GK V+ KRAVP++
Sbjct: 79 AAMKQRPHIIDGKTVDPKRAVPRD 102
Score = 47 (21.6 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 15/55 (27%), Positives = 17/55 (30%)
Query: 300 GGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWG 354
GG R D G G PGA+ G G G G+ WG
Sbjct: 208 GGRSR-DGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWG 261
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 376 (137.4 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 79/185 (42%), Positives = 112/185 (60%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I TGR++GFGF++F D A E
Sbjct: 60 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVE 119
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 120 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 162
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF +FG I + + D T + RGF FIT+ EE V +VL K FH ++G E+K
Sbjct: 163 KIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKV 222
Query: 181 AVPKE 185
A PKE
Sbjct: 223 AQPKE 227
Score = 171 (65.3 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 36/109 (33%), Positives = 60/109 (55%)
Query: 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
A P +QN I++S K+FVGGL+ ++ D K YF +FG + D +
Sbjct: 40 APPAGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 97
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
NT R +GFGFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 98 VPNTGRSKGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 146
Score = 39 (18.8 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 286 GGNSNRFSTPVGFSGGNGRG 305
GG NR G GG G G
Sbjct: 237 GGRGNRNRGNRGSGGGGGSG 256
Score = 37 (18.1 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 240 RGGISPFGGAGYGVGMNLDGGLSPSYGGSSN 270
RG GG G G + + G S GG N
Sbjct: 244 RGNRGSGGGGGSGGQGSTNYGKSQRRGGHQN 274
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 362 (132.5 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 78/200 (39%), Positives = 119/200 (59%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ V +
Sbjct: 12 LRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMC 71
Query: 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFK 123
H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E + +
Sbjct: 72 ARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTGEYNLR 120
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 121 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 180
Query: 184 KEF--SPGPSRSSMIGYNNF 201
K+ S G R G NF
Sbjct: 181 KQEMQSAGSQRGCGGGSGNF 200
Score = 210 (79.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 41/94 (43%), Positives = 62/94 (65%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F ++GT+TD VVM D T+R RGFGF+TY
Sbjct: 4 HDPKEPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 63
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
EE VD + H+++G++VE KRAV +E S P
Sbjct: 64 EE-VDAAMCARPHKVDGRVVEPKRAVSREDSVKP 96
Score = 52 (23.4 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 247 GGAG--YGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGG 287
GG+G G G N GG GG+ + GYG G + GG
Sbjct: 195 GGSGNFMGHGGNFGGG-----GGNFGRGGNSGYGNQGGGYGGG 232
Score = 48 (22.0 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 239 GRGGISPFG--GAGYGVG 254
GRGG S +G G GYG G
Sbjct: 215 GRGGNSGYGNQGGGYGGG 232
Score = 46 (21.3 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 229 MDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG-YG 278
M S S G GG F G G G GG + GG+S + N G YG
Sbjct: 184 MQSAGSQRGCG-GGSGNFMGHGGNFG---GGGGNFGRGGNSGYGNQGGGYG 230
Score = 39 (18.8 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 336 GSGSGNFEV---SFGNNSVNWG 354
G GSGNF +FG N+G
Sbjct: 194 GGGSGNFMGHGGNFGGGGGNFG 215
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 107/307 (34%), Positives = 158/307 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 20 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 79
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 80 SARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 128
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
++YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 129 REYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 188
Query: 183 PKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGG 242
K+ + SS G N F R N GG G + G GG
Sbjct: 189 SKQEMQ--TASSQRGRGGGSGN--------FMGRGNFGGGGGGG---GPGYGNPGGGYGG 235
Query: 243 ISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRM-LGPFPGGNS--NRFS-TPVGF 298
G GY G N GG G ++F N G + GP GG S R S +P G
Sbjct: 236 -GGGGYDGYNEGGNFGGGNYGGSGNYNDFGNYSGQQQSNYGPMKGGGSFGGRSSGSPYGG 294
Query: 299 SGGNGRG 305
G+G G
Sbjct: 295 GYGSGSG 301
Score = 215 (80.7 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 40/94 (42%), Positives = 62/94 (65%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY
Sbjct: 12 HEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 71
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 72 VEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 105
Score = 78 (32.5 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 33/103 (32%), Positives = 39/103 (37%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGF 298
GRG GG G G G GG YGG + G G F GGN F
Sbjct: 211 GRGNFGGGGGGG-GPGYGNPGG---GYGGGGGGYDGYNEG---GNFGGGNYGGSGNYNDF 263
Query: 299 SGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGN 341
GN G S + G GS ++ + G GSGSG+
Sbjct: 264 --GNYSGQQ--QSNYGPMKGGGSFGGRSSGSPYGGGYGSGSGS 302
Score = 62 (26.9 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 25/85 (29%), Positives = 33/85 (38%)
Query: 266 GGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSA 325
GGS NF +G G G GG + P G GG G G + N +G G+ +
Sbjct: 204 GGSGNF---MGRGNF-GGGGGGGGPGYGNPGGGYGGGGGGYDGYNEGG-N-FGGGNYGGS 257
Query: 326 TNPASPGAFLGSGSGNFEVSFGNNS 350
N G + G N+ G S
Sbjct: 258 GNYNDFGNYSGQQQSNYGPMKGGGS 282
Score = 56 (24.8 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 197 GYNNFGFNRPTNLLN-SFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGM 255
GY+ G+N N ++ N + G + + S + P+ +GG S FGG G
Sbjct: 239 GYD--GYNEGGNFGGGNYGGSGNYNDFGNYSGQQQSNYGPM---KGGGS-FGGRSSG--- 289
Query: 256 NLDGGLSPSYGGSSNFSNSLGYG 278
SP GG + S S GYG
Sbjct: 290 ------SPYGGGYGSGSGSGGYG 306
Score = 41 (19.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 299 SGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWG 354
S GRG + +G G +PG G G G ++ + N N+G
Sbjct: 197 SSQRGRGGGSGNFMGRGNFGGGGGGGGPGYGNPGGGYGGGGGGYD-GY-NEGGNFG 250
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 104/311 (33%), Positives = 154/311 (49%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
ME+ L KLF+GG++ T ++ L+ +F +YG++ + V+++++ R+R FGFV ++ P A
Sbjct: 5 MENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEA 64
Query: 61 ERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTE 119
+ + + H++DG VE K+AV R+D + KKIF+GGL + E
Sbjct: 65 DSAMSARPHILDGNNVELKRAVAREDAG----------KPEALAKVKKIFIGGLKDDIEE 114
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
+ F QFG + V+ D T + RGFGF+ ++ ++ D+ + FH +NG VEVK
Sbjct: 115 DHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVK 174
Query: 180 RAVPK-EFSPGPSRSSMIGYNNFG--FNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPL 236
+A+ K E SR G G RP N Y GG+G D
Sbjct: 175 KALTKQEMQAAGSRGGGRGGRGGGRGMGRPQNGYGGRGGGYGNYGGGGYGGN-DGYGGGY 233
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYG--GSSNFSNSLGYGRMLGPFPGGNSNRFST 294
G GG +GG GYG M GG Y GS S GYG M G + G ++ +S
Sbjct: 234 GGGYGG--GYGG-GYGDQMEGYGG-GNGYNDFGSGYGQQSSGYGPMKGNYSGRSNAPYSR 289
Query: 295 PVGFSGGNGRG 305
G GG GRG
Sbjct: 290 GGG-GGGYGRG 299
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 101/288 (35%), Positives = 146/288 (50%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YFS++GEV + I D TGR+RGFGF++F +P+ +
Sbjct: 91 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVD 150
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 151 KVLAQKEHRLDGRQIDPKKAM-------------AMKKEP----VKKIFVGGLNPETTEE 193
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGK------ 174
++YF FG I + + D + + RGF FIT+ EEAV ++L K +H ++G
Sbjct: 194 RIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHNVSGTKDTSGK 253
Query: 175 --MVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSR 232
+ E+K A PKE G G R N + Q YN G+G +
Sbjct: 254 EGLCEIKIAQPKEVYQQQQYGGRFGGGGRGRGRGGQGQN-WNQGYNNYWNQGYG---NQG 309
Query: 233 FSPLATGRGGISPFGG-AGYGVGMNLDGGLSPSYGGSSNFSNSLGYGR 279
+ G GG +GG GYG + GG YGG + YG+
Sbjct: 310 YG----GYGGQQGYGGYGGYG-NYDYSGGYYGGYGGYDYNQGNTSYGK 352
Score = 190 (71.9 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 96 IHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
I +S G K+FVGGL+ ++ D K YF +FG +TD + D NT R RGFGFI +
Sbjct: 85 IDASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFK 144
Query: 156 SEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
VD+VL + H L+G+ ++ K+A+ + P
Sbjct: 145 EPSGVDKVLAQKEHRLDGRQIDPKKAMAMKKEP 177
Score = 58 (25.5 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 246 FGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRG 305
+G GYG G G YGG N+ S GY G + G + N+ +T G + G
Sbjct: 305 YGNQGYG-GYGGQQGYG-GYGGYGNYDYSGGY---YGGYGGYDYNQGNTSYGKTPRRGAH 359
Query: 306 DS 307
S
Sbjct: 360 QS 361
Score = 54 (24.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 246 FGGAGYGVGMNLDGGLSPSYG-GSSNFSNSLGYGRM-LGPFPG-------GNSNRFSTPV 296
FGG G G G GG ++ G +N+ N GYG G + G G +
Sbjct: 277 FGGGGRGRGR---GGQGQNWNQGYNNYWNQ-GYGNQGYGGYGGQQGYGGYGGYGNYDYSG 332
Query: 297 GFSGGNGRGDSVLSSTTW 314
G+ GG G D +T++
Sbjct: 333 GYYGGYGGYDYNQGNTSY 350
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 114/318 (35%), Positives = 158/318 (49%)
Query: 1 ME-SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAV 59
ME S L KLFIGG++ T E L+ +F +G + + V++ + T R+R FGFV +++
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 60 AERVIM-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGGLASTV 117
A+ + H +DG TVE K+AV R+D + PG + KK+FVGGL V
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDV 109
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE 177
E D ++F QFGT+ ++ D + + RGFGF+ + + +A D+ FH + G VE
Sbjct: 110 AEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 169
Query: 178 VKRAVPKE--FSPGP---SRSSMIGYNNFGFN--RPTN-LLNSFAQRYNLSPAGGFGVRM 229
VK+AVPKE +S G SRSS G G R N L YN GG+G
Sbjct: 170 VKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYN--SYGGYGGGG 227
Query: 230 DSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNS 289
++ G GG S +GG+ YG G G S + S S G G G GG S
Sbjct: 228 GGGYNAYGGGGGG-SSYGGSDYGNGFGGFGSYS-QHQSSYGPMKSGGGGGGGGSSWGGRS 285
Query: 290 NRFSTPVGFSGGNGRGDS 307
N G+ GG G G S
Sbjct: 286 NSGPYRGGYGGGGGYGGS 303
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 109/317 (34%), Positives = 157/317 (49%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+M D T R+RGFGFV + + +
Sbjct: 22 LRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAM 80
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 81 NARPQKMDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 129
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H NG EV++A+
Sbjct: 130 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVRKAL 189
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR 240
K+ S S+ G NFG R F N G F R A R
Sbjct: 190 SKQEMASASSSQRGRSGSGNFGGGRG----GGFGGNDNFGRGGNFSGR-----GGFAGSR 240
Query: 241 GGISPFGG-AGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRM---LGPFPGGN-SNRFSTP 295
GG GG AG G G N G ++GG ++++ Y GP GGN R S P
Sbjct: 241 GG----GGYAGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGP 296
Query: 296 VGFSGGNGRGDSVLSST 312
G G G G S SS+
Sbjct: 297 YG-DGEGGYGGSSSSSS 312
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 113/318 (35%), Positives = 156/318 (49%)
Query: 1 ME-SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAV 59
ME S L KLFIGG++ T E L+ +F +G + + V++ + T R+R FGFV +++
Sbjct: 6 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 65
Query: 60 AERVIM-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGGLASTV 117
A+ + H +DG TVE K+AV R+D + PG + KK+FVGGL V
Sbjct: 66 ADAAMAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDV 114
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE 177
E D ++F QFGT+ ++ D + + RGFGF+ + + +A D+ FH + G VE
Sbjct: 115 AEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 174
Query: 178 VKRAVPKEF-----SPGPSRSSMIGYNNFGFN--RPTN-LLNSFAQRYNLSPAGGFGVRM 229
VK+AVPKE G SRSS G G R N L YN GG+G
Sbjct: 175 VKKAVPKEDIHSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYN--SYGGYGGG- 231
Query: 230 DSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNS 289
++ G GG S +GG+ YG G G S + S S G G G GG S
Sbjct: 232 GGGYNAYGGGGGGGSSYGGSDYGNGFGGFGSYS-QHQSSYGPMKSGGGGGGGGSSWGGRS 290
Query: 290 NRFSTPVGFSGGNGRGDS 307
N G+ GG G G S
Sbjct: 291 NSGPYRGGYGGGGGYGGS 308
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 111/314 (35%), Positives = 161/314 (51%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T EE L+ Y+ ++G++ + V+MRD A+ R+RGFGFV F+ A + +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H IDGR VE K+AV R++ PG T KK+FVGG+ E +
Sbjct: 70 RPHSIDGRVVEPKRAVAREESG-----------KPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + +H NG EV++A+ +
Sbjct: 119 YFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKALSR 177
Query: 185 EFSPGP--SRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGG 242
+ SRS FG +R + N G G F G GG
Sbjct: 178 QEMQEVQNSRSGRPRTLLFGDSRGGGGNSGPGPGSNFR-GGSDGYGSGRGFGDGYNGYGG 236
Query: 243 ISP----FGGA-GYGVGMNLDGGLSPSYGGSSN-----FSNSLG--YGR-MLGPFPGGNS 289
P FGG+ GYG G GG P YG + N G YGR M GP+ GGN
Sbjct: 237 -GPRSGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGRNMGGPYGGGNY 295
Query: 290 NRFSTPVGFSGGNG 303
P G SGG+G
Sbjct: 296 G----PGG-SGGSG 304
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 117/356 (32%), Positives = 175/356 (49%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S +T EE LK Y+ ++GE+ + V++R A+ ++RGFGFV F+ A + +
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+ H IDGR V+ K+AV R+ + S ++ KK+FVGG+ E ++Y
Sbjct: 82 RPHSIDGRVVDPKRAVSREKSE---KQGSLVN-------VKKLFVGGIKEDTEEHHLREY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV +A+ ++
Sbjct: 132 FEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKALSRQ 191
Query: 186 FSP---GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLS---PAGGFGVRMDSRFSPLATG 239
GP RS G FGF+ +N +F + A G+G +SR G
Sbjct: 192 EMKEIQGP-RSRKGG--PFGFSVSSNGGGNFGRGPGTKFRGEADGYGNGPESRDGCHGYG 248
Query: 240 RG-GISPFGGAG-YGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPG-GNSNRFSTPV 296
G G FGG YG G N GG P YGG G G G PG GN FS
Sbjct: 249 GGPGGGNFGGYPCYGGG-NF-GGY-PCYGG--------GGGEYAGRRPGYGNQWEFS--- 294
Query: 297 GFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFGNNS 350
G GN G+ + + NG N +P G G G +G S
Sbjct: 295 GGGYGNNFGNYDQQPSNYGPMRNGIFGVGRNIVAPYGGGNYGPGGNGGSGGYGGGS 350
Score = 186 (70.5 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 35/82 (42%), Positives = 54/82 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+S TE K Y+ Q+G +TD VV+ +Q+ RGFGF+T+ S VD +
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKEFS 187
H ++G++V+ KRAV +E S
Sbjct: 81 ARPHSIDGRVVDPKRAVSREKS 102
Score = 63 (27.2 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 33/118 (27%), Positives = 45/118 (38%)
Query: 243 ISPFGGAGYGVGMNLD-GGLSPSYG-GSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSG 300
+S GG +G G G + YG G + GYG GP GGN + P + G
Sbjct: 211 VSSNGGGNFGRGPGTKFRGEADGYGNGPESRDGCHGYGG--GP-GGGNFGGY--PC-YGG 264
Query: 301 GNGRGDSVLSSTTWNVWGNGSLNSATNPA--SPGAFLGSGSGNFEVSFGNNSVNWGPV 356
GN G G G + P + F G G GN ++ N+GP+
Sbjct: 265 GNFGGYPCYG-------GGGGEYAGRRPGYGNQWEFSGGGYGNNFGNYDQQPSNYGPM 315
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 339 (124.4 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 71/179 (39%), Positives = 110/179 (61%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG++ T EE LK ++ ++G+VV+ V+MRD AT R+RGFGF+ + + +R
Sbjct: 31 LRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQ 90
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123
++ H+IDG+TVEAK+A+PR ++ N S KK+FVGGL E +
Sbjct: 91 ENRPHIIDGKTVEAKRALPRPERESRETNIS----------VKKLFVGGLKDNHDEECLR 140
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+YF QFG + V ++ D T + RGF F+ +D +AVD+ + K H + V+VK+++
Sbjct: 141 EYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSI 199
Score = 200 (75.5 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 39/79 (49%), Positives = 52/79 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGLA TE + K ++ Q+G + DVVVM D T+R RGFGFITY VDR
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 166 KTFHELNGKMVEVKRAVPK 184
H ++GK VE KRA+P+
Sbjct: 92 NRPHIIDGKTVEAKRALPR 110
Score = 62 (26.9 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 256 NLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTP 295
N G +YGG + N++ RM P+ G N + TP
Sbjct: 386 NFGTGYQQNYGGGPSKHNNMNANRM-NPYSAGPPNSYHTP 424
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 110/336 (32%), Positives = 163/336 (48%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-----DPAV 59
L KLFIGG S++T +E L+ +F + G + + V+MRD T R+RGFGFV + DPA+
Sbjct: 13 LQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAM 72
Query: 60 AERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVT 118
R H +DGR VE K+ ++D PG T KKIF GG+
Sbjct: 73 HAR----PHKVDGRVVEPKRTSSKEDSQR-----------PGAHLTVKKIFAGGIKEDTE 117
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E + YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEV 177
Query: 179 KRAVPKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFS 234
++A+ K+ S S+ G NFG R ++F N GGFG
Sbjct: 178 RKALSKQEMASASCSQRGQSGSGNFGGFRGCGFGGNDNFGHGGNFRGRGGFG-------- 229
Query: 235 PLATGRGGISPFGGAGYGV-GMNLDGGLSPSYGGS---SNFSNSLGYGRMLGPFPGGN-S 289
G GG +GG G G G + DG ++GG ++F N +GP G N
Sbjct: 230 ----GSGGGGGYGGRGDGYNGFDNDGS---NFGGGRRHNDFGNYNNQSSNVGPMKGRNFG 282
Query: 290 NRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSA 325
R S P G G G+G +G+ S +S+
Sbjct: 283 GRSSGPYG---GGGKGQYFAKPRNQGGYGSSSSSSS 315
Score = 213 (80.0 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 42/97 (43%), Positives = 60/97 (61%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S GP + +K+F+GG + T+ + +F Q G +TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD +H H+++G++VE KR KE S P
Sbjct: 62 YTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRP 98
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 318 GNGSLNSATNPASPGAFLGSGSG 340
GN + N G F GSG G
Sbjct: 212 GNDNFGHGGNFRGRGGFGGSGGG 234
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 103/278 (37%), Positives = 144/278 (51%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D A E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF +FG I + + D + RGF FIT+ EE V +VL K FH ++G E+K
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKV 228
Query: 181 AVPKE-FSPGPSRSSMIGYNNFGFNRPTN--LLNSFAQRYNLSPAGGFGVRMDSRFSPLA 237
A PKE + S G N G NR + S+ Q Y G+G + + P
Sbjct: 229 AQPKEVYQQQQYGSGGRGNRNRG-NRGSGGGQSQSWNQGYGNYWNQGYGYQQG--YGPGY 285
Query: 238 TGRG----GISPFG-GAGYGVGMNLDGGLSPSYGGSSN 270
G G +G G Y G + + G S GG N
Sbjct: 286 GGYDYSPYGYYGYGPGYDYSQG-STNYGKSQRRGGHQN 322
Score = 185 (70.2 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 39/112 (34%), Positives = 62/112 (55%)
Query: 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVV 136
A A P +QN I++S K+FVGGL+ ++ D K YF +FG + D
Sbjct: 43 ATAAPPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT 100
Query: 137 VMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ D NT R RGFGFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 102/317 (32%), Positives = 156/317 (49%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
ME L KLF+GG++ T + L+ YF ++G + + V++++ R+R FGFV ++ A
Sbjct: 4 MEK-LCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEA 62
Query: 61 ERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTE 119
+ + + H++DG+ VE K+AV R+D ++ + KKIFVGGL + E
Sbjct: 63 DAAMAARPHVVDGKNVEVKRAVAREDAG----RPEAL------AKVKKIFVGGLKDDIEE 112
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
D ++F QFG I V+ D +T + RGFGF+ ++ ++ D+ + FH +NG VEVK
Sbjct: 113 KDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVK 172
Query: 180 RAVPKEF--SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLA 237
+A+ K+ + G +R G R N F GG+G +
Sbjct: 173 KALTKQEIQAAGGARGGRGRGGGRGMGRNQN---GFGGGRG-GGYGGYGGGYGGGYGGND 228
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPS---YGGSSNFSN-SLGYGRM---LGPFPGGNS- 289
G GG GG G G G GG YGG +++S+ GYG+ GP GGN+
Sbjct: 229 GGYGGSYGSGGYGGGYGGGYGGGYGEQMGGYGGGNDYSDFGSGYGQQSSGYGPMKGGNTY 288
Query: 290 -NRFSTPVGFSGGNGRG 305
R P GG G G
Sbjct: 289 GGRSGAPYPRGGGGGPG 305
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 106/314 (33%), Positives = 151/314 (48%)
Query: 1 ME-SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAV 59
ME S L KLFIGG++ T E L+E+F+ YG + + V++ + T R+R FGFV ++
Sbjct: 22 MENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEE 81
Query: 60 AERVIM-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGGLASTV 117
A+ + H +DG +VE K+AV R+D + PG + KK+FVGGL V
Sbjct: 82 ADAAMAASPHAVDGNSVELKRAVSREDS-----------AKPGAHAKVKKLFVGGLKGDV 130
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE 177
E D ++F QFG + ++ D + + RGFGF+ + + +A D+ FH + G VE
Sbjct: 131 GEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 190
Query: 178 VKRAVPKE-FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPL 236
VK+AVPKE G S+ G R S + +N GG G +
Sbjct: 191 VKKAVPKEDIQAGGGGSARPSRGGRGGGRGRGGGGSGNRDHNGLSKGGGGYNSYGGYG-- 248
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFS-NSLGYGRML----GPFPGGNSNR 291
G GG +GG YG G G YGG ++S + YG M G GGN
Sbjct: 249 GGGGGGYGGYGGGSYGGGGG-GGDYGNGYGGFGSYSQHQSSYGPMKSGGGGGGGGGNWGG 307
Query: 292 FSTPVGFSGGNGRG 305
S + GG G G
Sbjct: 308 RSNSGPYRGGYGGG 321
Score = 236 (88.1 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 86/259 (33%), Positives = 112/259 (43%)
Query: 89 LNRNTSSIHSS-PGP-GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRP 146
L R S S+ PG + KK+FVGGL V E D ++F QFG + ++ D + +
Sbjct: 100 LKRAVSREDSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKK 159
Query: 147 RGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE-FSPGPSRSSMIGYNNFGFNR 205
RGFGF+ + + +A D+ FH + G VEVK+AVPKE G S+ G R
Sbjct: 160 RGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIQAGGGGSARPSRGGRGGGR 219
Query: 206 PTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSY 265
GG G R D + L+ G GG + +GG G G G G SY
Sbjct: 220 GRG-------------GGGSGNR-DH--NGLSKGGGGYNSYGGYGGGGGGGYGGYGGGSY 263
Query: 266 GGSSNFSNSLGYGRMLGPFPGGNSNRFST--PVGFSGGNGRGDSVLSSTTWNVWGNGSLN 323
GG + YG G F G S S+ P+ GG G G N WG G N
Sbjct: 264 GGGGGGGD---YGNGYGGF-GSYSQHQSSYGPMKSGGGGGGGGG-------N-WG-GRSN 310
Query: 324 SATNPASPGAFLGSGSGNF 342
S G G G G+F
Sbjct: 311 SGPYRGGYGGG-GYGGGSF 328
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 80/185 (43%), Positives = 112/185 (60%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D A E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF +FG I + + D + RGF FIT+ EE V +VL K FH ++G E+K
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKV 228
Query: 181 AVPKE 185
A PKE
Sbjct: 229 AQPKE 233
Score = 185 (70.2 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 39/112 (34%), Positives = 62/112 (55%)
Query: 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVV 136
A A P +QN I++S K+FVGGL+ ++ D K YF +FG + D
Sbjct: 43 ATAAPPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT 100
Query: 137 VMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ D NT R RGFGFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 80/185 (43%), Positives = 112/185 (60%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D A E
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 168
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF +FG I + + D + RGF FIT+ EE V +VL K FH ++G E+K
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKV 228
Query: 181 AVPKE 185
A PKE
Sbjct: 229 AQPKE 233
Score = 185 (70.2 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 39/112 (34%), Positives = 62/112 (55%)
Query: 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVV 136
A A P +QN I++S K+FVGGL+ ++ D K YF +FG + D
Sbjct: 43 ATAAPPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT 100
Query: 137 VMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ D NT R RGFGFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 101 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 152
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 94/290 (32%), Positives = 149/290 (51%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S+ T EE L++Y+ ++GE+ + V++RD A+ R+RG GFV F+ + +
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+ H IDGR +E ++A+PR+ + + KK+FVGG+ E ++Y
Sbjct: 70 RPHSIDGRVLEPRRAIPREASGQRGAHWT----------LKKLFVGGIKEDTEEHHLREY 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+++G I + ++ D + R RGFGF+T+D + VD+++ + +H +NG EV++A+
Sbjct: 120 FEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKALSIW 179
Query: 186 FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLS---PAGGFGVRMDSRFSPLATGRG- 241
S + F F+ ++ +F + A G+G SR S G G
Sbjct: 180 EMQQVQGSRSRKRDPFDFSVSSSWGGNFGRGPGTKFRGEADGYGNGPRSRDSCQGYGGGP 239
Query: 242 GISPFGG-AGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSN 290
G FGG GYG G G P YG FS GYG G + SN
Sbjct: 240 GGGNFGGYPGYGGGGGEYAGRGPGYGNQWEFSGG-GYGNNFGNYDQQPSN 288
Score = 192 (72.6 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE +KY+ Q+G +TD VV+ D +QR RG GF+T+ S VD +
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 166 KTFHELNGKMVEVKRAVPKEFS 187
H ++G+++E +RA+P+E S
Sbjct: 69 ARPHSIDGRVLEPRRAIPREAS 90
Score = 189 (71.6 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLF+GGI DT+E L+EYF +YG++ I+ DR +GR RGFGFV F D ++++
Sbjct: 99 LKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIV 158
Query: 65 MDK-HMIDGRTVEAKKAV 81
+ K H I+G E +KA+
Sbjct: 159 LQKYHAINGHHAEVRKAL 176
Score = 73 (30.8 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 211 NSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSN 270
N+F Y+ P+ +G + F GR +P+GG YG G + GG S YGG S
Sbjct: 277 NNFGN-YDQQPSN-YGPMRNGNFG---VGRNKAAPYGGGNYGPGGS--GG-SGGYGGRSG 328
Query: 271 F 271
+
Sbjct: 329 Y 329
Score = 71 (30.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 39/126 (30%), Positives = 48/126 (38%)
Query: 186 FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGG-FGVRMD-----SRFSPLATG 239
F GP + +G N P + Q Y P GG FG ++ G
Sbjct: 207 FGRGPGTKFRGEADGYG-NGPRS--RDSCQGYGGGPGGGNFGGYPGYGGGGGEYAGRGPG 263
Query: 240 RGGISPFGGAGYGVGM-NLDGGLSPSYGGSSNFSNSLGYGR-MLGPFPGGNSNRFSTPVG 297
G F G GYG N D S +YG N + G GR P+ GGN P G
Sbjct: 264 YGNQWEFSGGGYGNNFGNYDQQPS-NYGPMRN--GNFGVGRNKAAPYGGGNYG----PGG 316
Query: 298 FSGGNG 303
SGG+G
Sbjct: 317 -SGGSG 321
Score = 60 (26.2 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 29/103 (28%), Positives = 40/103 (38%)
Query: 258 DGGLSPSYGGSSNFSNSLGYGRMLGPFPG-GNSNRFSTPV-GFSGGNGRGDSVLSSTTWN 315
D +S S+GG NF G + G G GN R G+ GG G G+
Sbjct: 196 DFSVSSSWGG--NFGRGPGT-KFRGEADGYGNGPRSRDSCQGYGGGPGGGNF---GGYPG 249
Query: 316 VWGNGSLNSATNPA--SPGAFLGSGSGNFEVSFGNNSVNWGPV 356
G G + P + F G G GN ++ N+GP+
Sbjct: 250 YGGGGGEYAGRGPGYGNQWEFSGGGYGNNFGNYDQQPSNYGPM 292
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 98/280 (35%), Positives = 143/280 (51%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A E
Sbjct: 26 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 85
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ + +H +DG+ ++ K+A ++ P KK+FVGGL+ +E
Sbjct: 86 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 129
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V ++L +H++ E+K
Sbjct: 130 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 189
Query: 181 AVPKEF------SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFS 234
A PKE +S+ G G R ++ Q +N G+G +S +S
Sbjct: 190 AQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYS 248
Query: 235 PLA-TGRGGISPFG----GAGYGVGMNLDGGLSPSYGGSS 269
+ +G GG G GYG G G +YG +S
Sbjct: 249 DQSYSGYGGYDYSGYNYPNYGYGPGYTDYSGQQSTYGKAS 288
Score = 162 (62.1 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 18 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 77
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +V++VL H+L+GK+++ KRA
Sbjct: 78 FKDAASVEKVLELKEHKLDGKLIDPKRA 105
Score = 57 (25.1 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 28/98 (28%), Positives = 40/98 (40%)
Query: 266 GGSSNFSNSLGYGRMLGPFPGGNSNR-FSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNS 324
GG SN S G GR G G N N+ F+ + G G +S S +++ +G +
Sbjct: 205 GGKSNASGGRGGGRGRGRGQGQNWNQGFNNY--YDQGYGNYNSAYSDQSYSGYGGYDYSG 262
Query: 325 ATNPA---SPGA--FLGSGS--GNFEVSFGNNSVNWGP 355
P PG + G S G GN+ N+ P
Sbjct: 263 YNYPNYGYGPGYTDYSGQQSTYGKASRGGGNHQNNYQP 300
Score = 52 (23.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 24/90 (26%), Positives = 36/90 (40%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYG-GSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG 297
GRGG G G G G N + G + Y G N+ NS + + G + + ++ P
Sbjct: 213 GRGGGR---GRGRGQGQNWNQGFNNYYDQGYGNY-NSAYSDQSYSGYGGYDYSGYNYP-N 267
Query: 298 FSGGNGRGDSVLSSTTWNVWGNGSLNSATN 327
+ G G D +T+ G N N
Sbjct: 268 YGYGPGYTDYSGQQSTYGKASRGGGNHQNN 297
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 110/316 (34%), Positives = 153/316 (48%)
Query: 1 ME-SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAV 59
ME S L KLFIGG++ T E L+ +F +G + + V++ + T R+R FGFV +++
Sbjct: 6 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 65
Query: 60 AERVIM-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGGLASTV 117
A+ + H +DG TVE K+AV R+D + PG + KK+FVGGL V
Sbjct: 66 ADAAMAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDV 114
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE 177
E D ++F QFGT+ ++ D + + RGFGF+ + + +A D+ FH + G VE
Sbjct: 115 AEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 174
Query: 178 VKRAVPKEF-----SPGPSRSSMIGYNNFGFN--RPTN-LLNSFAQRYNLSPAGGFGVRM 229
VK+AVPKE G SRSS G G R N L YN GG+G
Sbjct: 175 VKKAVPKEDIHSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYN--SYGGYGG-- 230
Query: 230 DSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNS 289
++ G GG S +GG+ YG G G S + G G G GG S
Sbjct: 231 GGGYNAYGGGGGG-SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGG--GSSWGGRS 287
Query: 290 NRFSTPVGFSGGNGRG 305
N G+ GG G G
Sbjct: 288 NSGPYRGGYGGGGGYG 303
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 102/278 (36%), Positives = 144/278 (51%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D + E
Sbjct: 70 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 129
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 130 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 172
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V +VL K FH ++G E+K
Sbjct: 173 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 232
Query: 181 AVPKE-FSPGPSRSSMIGYNNFGFNRPTN--LLNSFAQRYNLSPAGGFGVRMDSRFSPLA 237
A PKE + S G N G NR + S+ Q Y G+G + + P
Sbjct: 233 AQPKEVYQQQQYGSGGRGNRNRG-NRGSGGGQSQSWNQGYGNYWNQGYGYQQG--YGPGY 289
Query: 238 TGRG----GISPFG-GAGYGVGMNLDGGLSPSYGGSSN 270
G G +G G Y G + + G S GG N
Sbjct: 290 GGYDYSPYGYYGYGPGYDYSQG-STNYGKSQRRGGHQN 326
Score = 187 (70.9 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 38/109 (34%), Positives = 61/109 (55%)
Query: 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
A P +QN I++S K+FVGGL+ ++ D K YF +FG + D +
Sbjct: 50 AAPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 107
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
D NT R RGFGFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 108 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 156
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 102/278 (36%), Positives = 144/278 (51%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V +VL K FH ++G E+K
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 233
Query: 181 AVPKE-FSPGPSRSSMIGYNNFGFNRPTN--LLNSFAQRYNLSPAGGFGVRMDSRFSPLA 237
A PKE + S G N G NR + S+ Q Y G+G + + P
Sbjct: 234 AQPKEVYQQQQYGSGGRGNRNRG-NRGSGGGQSQSWNQGYGNYWNQGYGYQQG--YGPGY 290
Query: 238 TGRG----GISPFG-GAGYGVGMNLDGGLSPSYGGSSN 270
G G +G G Y G + + G S GG N
Sbjct: 291 GGYDYSPYGYYGYGPGYDYSQG-STNYGKSQRRGGHQN 327
Score = 187 (70.9 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 38/109 (34%), Positives = 61/109 (55%)
Query: 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
A P +QN I++S K+FVGGL+ ++ D K YF +FG + D +
Sbjct: 51 AAPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 108
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
D NT R RGFGFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 97/272 (35%), Positives = 135/272 (49%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YFS++GEV++ I D TGR+RGFGF++F + +
Sbjct: 41 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVD 100
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
RV+ K H +DGR ++ K+A+ +I P KKIFVGGL TE
Sbjct: 101 RVLQQKEHRLDGRQIDPKRAM-------------AIKKEP----VKKIFVGGLNPETTEE 143
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF FG I + + D T + RGF FIT+ E AV ++L K +H + G E+K
Sbjct: 144 KIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIKI 203
Query: 181 AVPKEFSPGP---SRSSMIGYNNFGFNRPTNLLNSFAQRY-NLSPAG-GFGVRMDSRFSP 235
A PKE +R G G P N Y N G G+G +
Sbjct: 204 AQPKEIYQQQQFGARGGGFGGRGRGRGGPGQSWNQGYNNYWNQGYGGQGYGYGGQQGYGG 263
Query: 236 LATGRGGISPFGGA-GYGVGMNLDGGLSPSYG 266
G G G GYG G + + SYG
Sbjct: 264 YG-GYGNYDYSSGYYGYGSGYDYTDQGAASYG 294
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 98/281 (34%), Positives = 144/281 (51%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A E
Sbjct: 62 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 121
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ + +H +DG+ ++ K+A ++ P KK+FVGGL+ +E
Sbjct: 122 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 165
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V ++L +H++ E+K
Sbjct: 166 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 225
Query: 181 AVPKEF------SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFS 234
A PKE +S+ G G R ++ Q +N G+G +S +S
Sbjct: 226 AQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYS 284
Query: 235 PLA-TGRGGISPFG----GAGYGVGM-NLDGGLSPSYGGSS 269
+ +G GG G GYG G + G +YG +S
Sbjct: 285 DQSYSGYGGYDYSGYNYPNYGYGPGYTDYSAGQQSTYGKAS 325
Score = 162 (62.1 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 54 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 113
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +V++VL H+L+GK+++ KRA
Sbjct: 114 FKDAASVEKVLELKEHKLDGKLIDPKRA 141
Score = 57 (25.1 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 25/86 (29%), Positives = 35/86 (40%)
Query: 266 GGSSNFSNSLGYGRMLGPFPGGNSNR-FSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNS 324
GG SN S G GR G G N N+ F+ + G G +S S +++ +G +
Sbjct: 241 GGKSNASGGRGGGRGRGRGQGQNWNQGFNNY--YDQGYGNYNSAYSDQSYSGYGGYDYSG 298
Query: 325 ATNPASPGAFLGSGSGNFEVSFGNNS 350
P G G G + S G S
Sbjct: 299 YNYPN-----YGYGPGYTDYSAGQQS 319
Score = 51 (23.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 25/91 (27%), Positives = 37/91 (40%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYG-GSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG 297
GRGG G G G G N + G + Y G N+ NS + + G + + ++ P
Sbjct: 249 GRGGGR---GRGRGQGQNWNQGFNNYYDQGYGNY-NSAYSDQSYSGYGGYDYSGYNYP-N 303
Query: 298 FSGGNGRGD-SVLSSTTWNVWGNGSLNSATN 327
+ G G D S +T+ G N N
Sbjct: 304 YGYGPGYTDYSAGQQSTYGKASRGGGNHQNN 334
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 93/279 (33%), Positives = 139/279 (49%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L +Y SR+GEV++ I D TGR+RGFGFV+F D +
Sbjct: 26 QEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVD 85
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
RV+ + +H +DG+ ++ K+A +I P KK+FVGGL+ +TE
Sbjct: 86 RVLELTEHKLDGKLIDPKRA-------------KAIKGKEPP---KKVFVGGLSPDITEE 129
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF +G I + + D T RGF F+T+ EE V ++L +H++ E+K
Sbjct: 130 QLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLENRYHQIGSGKCEIKV 189
Query: 181 AVPKE-FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
A PKE + +R G GF F Q YN +G + ++ G
Sbjct: 190 AQPKEVYRQQQNRDRGFGGGRGGFRGRGGRGQGFNQGYNNYYGQNYGGGYGNGYNQGYNG 249
Query: 240 RGGI--SPFGGAGYGVGMNLD--GGLSPSYGGSSNFSNS 274
G S + YG G D G SYG +S S +
Sbjct: 250 YSGYDYSGYNYQNYGYGQGYDDYSGQQSSYGKASRDSGN 288
Score = 178 (67.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D Y +FG + D + D T R RGFGF+
Sbjct: 18 SKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVL 77
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ E+VDRVL T H+L+GK+++ KRA
Sbjct: 78 FKDAESVDRVLELTEHKLDGKLIDPKRA 105
Score = 70 (29.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 19/70 (27%), Positives = 27/70 (38%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG-PFPGGNSNRFSTPVG 297
GRGG GG G G + +YGG + GY G + G N + G
Sbjct: 209 GRGGFRGRGGRGQGFNQGYNNYYGQNYGGGYGNGYNQGYNGYSGYDYSGYNYQNYGYGQG 268
Query: 298 FSGGNGRGDS 307
+ +G+ S
Sbjct: 269 YDDYSGQQSS 278
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 79/185 (42%), Positives = 112/185 (60%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V +VL K FH ++G E+K
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 233
Query: 181 AVPKE 185
A PKE
Sbjct: 234 AQPKE 238
Score = 187 (70.9 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 38/109 (34%), Positives = 61/109 (55%)
Query: 80 AVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
A P +QN I++S K+FVGGL+ ++ D K YF +FG + D +
Sbjct: 51 AAPSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 108
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
D NT R RGFGFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 79/185 (42%), Positives = 112/185 (60%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V +VL K FH ++G E+K
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 233
Query: 181 AVPKE 185
A PKE
Sbjct: 234 AQPKE 238
Score = 183 (69.5 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH 141
P +QN I++S K+FVGGL+ ++ D K YF +FG + D + D
Sbjct: 53 PSGNQN--GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP 110
Query: 142 NTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
NT R RGFGFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 111 NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 79/185 (42%), Positives = 112/185 (60%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D + E
Sbjct: 84 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 143
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 144 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 186
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V +VL K FH ++G E+K
Sbjct: 187 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 246
Query: 181 AVPKE 185
A PKE
Sbjct: 247 AQPKE 251
Score = 182 (69.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 90 NRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF 149
N I++S K+FVGGL+ ++ D K YF +FG + D + D NT R RGF
Sbjct: 72 NGEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 131
Query: 150 GFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
GFI + +V++VL + H L+G++++ K+A+ + P
Sbjct: 132 GFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 170
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 351 (128.6 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 76/201 (37%), Positives = 119/201 (59%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KL IGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ + +
Sbjct: 7 LRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAV 66
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 67 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 115
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EVK+A+
Sbjct: 116 RDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKAL 175
Query: 183 PKEF--SPGPSRSSMIGYNNF 201
K+ S G R G NF
Sbjct: 176 SKQEMQSAGSQRGRGGGSGNF 196
Score = 203 (76.5 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 39/92 (42%), Positives = 61/92 (66%)
Query: 99 SPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
S P + +K+ +GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY E
Sbjct: 1 SKEPEQLRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 60
Query: 159 AVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
VD + H+++G++VE KRAV +E S P
Sbjct: 61 EVDAAVCARPHKVDGRVVEPKRAVSREDSVKP 92
Score = 42 (19.8 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 239 GRGGISPFGGAGYGVGMN 256
GRGG GG +G G N
Sbjct: 198 GRGGNFGGGGGNFGCGGN 215
Score = 39 (18.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 336 GSGSGNFEV---SFGNNSVNWG 354
G GSGNF +FG N+G
Sbjct: 190 GGGSGNFMGRGGNFGGGGGNFG 211
Score = 38 (18.4 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 332 GAFLGSGSGNFEVSFGNNSVN 352
G G G GNF G NS++
Sbjct: 200 GGNFGGGGGNF--GCGGNSLH 218
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 114/355 (32%), Positives = 162/355 (45%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+ + T ++ LK +F ++G +V+ V+M+D T R+RGFGF+ ++ + +
Sbjct: 23 LRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQ 82
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H IDGRTVE K+AVPR + + SP G T KK+FVGGL E
Sbjct: 83 NARPHKIDGRTVEPKRAVPRQEID-----------SPNAGATVKKLFVGGLRDDHDEECL 131
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
++YF FG I V ++ D +T + RGF FI +D + VD+++ + H + K ++VK+A+
Sbjct: 132 REYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191
Query: 183 PKEFSP---------GPSRSSMIGYNNFGFNRP----TNLLNSFAQRYNLSPAGGFGVRM 229
K+ GP G + G N N GGFG
Sbjct: 192 AKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSG 251
Query: 230 DSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNS 289
+ G GG + GG+G G N GG GG GYG GGNS
Sbjct: 252 GNFGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGGGG-----GYG-------GGNS 299
Query: 290 NRFSTPVGFSGGNGRGDSVLSSTTWNVWGNG-SLNSATNPASPGAFL-GSGSGNF 342
N G +GG G G + +G G NS P + G G G F
Sbjct: 300 NG---SWGGNGGGGGGGGGFGNEYQQSYGGGPQRNSNFGNNRPAPYSQGGGGGGF 351
Score = 211 (79.3 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 42/112 (37%), Positives = 64/112 (57%)
Query: 85 DQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQ 144
+QN N N P + +K+F+GGL T+ K +F+++G I DVVVM D T+
Sbjct: 3 EQNDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTK 62
Query: 145 RPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMI 196
R RGFGFITY +D + H+++G+ VE KRAVP++ P+ + +
Sbjct: 63 RSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATV 114
Score = 85 (35.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 32/107 (29%), Positives = 40/107 (37%)
Query: 239 GRGGISPFGGAGYGVGMNLD--GGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFST-P 295
G GG + GG GYG G + GG GG F N Y + G P NSN + P
Sbjct: 282 GNGGWNGGGGGGYGGGNSNGSWGGNGGGGGGGGGFGNE--YQQSYGGGPQRNSNFGNNRP 339
Query: 296 VGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNF 342
+S G G G G N T G +G G+ +
Sbjct: 340 APYSQGGG-GGGFNKGNQGGGQGFAGNNYNTGGGGQGGNMGGGNRRY 385
Score = 59 (25.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 21/70 (30%), Positives = 23/70 (32%)
Query: 286 GGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNFE 343
GG R G G G+GD W G N N A G G+ GNF
Sbjct: 200 GGGGGRGGPRAG--GRGGQGDRGQGGGGWG--GQNRQNGGGNWGGAGGGGGFGNSGGNFG 255
Query: 344 VSFGNNSVNW 353
G S W
Sbjct: 256 GGQGGGSGGW 265
Score = 50 (22.7 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 21/78 (26%), Positives = 27/78 (34%)
Query: 276 GYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFL 335
G GR GP GG + G GG G + W G G + + G
Sbjct: 202 GGGRG-GPRAGGRGGQGDRGQG-GGGWGGQNRQNGGGNWGGAGGGG-GFGNSGGNFGGGQ 258
Query: 336 GSGSGNFEVSFGNNSVNW 353
G GSG + G+ W
Sbjct: 259 GGGSGGWNQQGGSGGGPW 276
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 106/315 (33%), Positives = 159/315 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIG +S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ ++GR VE K+AV R+D PG T KKIFVGG+ TE
Sbjct: 73 NARPQKVNGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKED-TEHHL 120
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G + +M D + RGF F+T+D ++VD+++ + +H +NG E + V
Sbjct: 121 RDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCETR--V 178
Query: 183 PKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRG 241
++ S S+ G NFG++ + S Q Y +G G ++ GRG
Sbjct: 179 KQDMASASSSQRGRSGSGNFGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNN-GGGRG 237
Query: 242 GISPFGGAGYGVGMNL-DGGLSPSYGG-SSNFSNSLGY---GRMLGPFPGGNSNRFSTPV 296
G G+ +G G + D G +Y SSNF G GR GP+ GG F+ P
Sbjct: 238 GFGSGSGSNFGGGGSYNDFG---NYNNQSSNFGPMKGGNFGGRSSGPY-GGGGQYFAKPR 293
Query: 297 GFSGGNGRGDSVLSS 311
GG G G S SS
Sbjct: 294 N-QGGYG-GSSSSSS 306
Score = 216 (81.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 42/97 (43%), Positives = 63/97 (64%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+G L+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ ++NG++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPQKVNGRVVEPKRAVSREDSQRP 98
Score = 70 (29.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 27/72 (37%), Positives = 34/72 (47%)
Query: 297 GFSGGN---GRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSG-NFEVS-----FG 347
G+SGG+ G G + G+GS +S N G F GSGSG NF FG
Sbjct: 199 GYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGGF-GSGSGSNFGGGGSYNDFG 257
Query: 348 N---NSVNWGPV 356
N S N+GP+
Sbjct: 258 NYNNQSSNFGPM 269
Score = 39 (18.8 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 337 SGSGNFEVSFGNNSVNWG 354
SGSGNF S G+ G
Sbjct: 193 SGSGNFGYSGGSRGYGSG 210
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 110/321 (34%), Positives = 152/321 (47%)
Query: 1 ME-SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAV 59
ME S L KLFIGG++ T E L+ +F +G + + V++ + T R+R FGFV +++
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 60 AERVIM-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGGLASTV 117
A+ + H +DG TVE K+AV R+D + PG + KK+FVGGL V
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDV 109
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE 177
E D ++F QFGT+ ++ D + + RGFGF+ + + +A D+ FH + G VE
Sbjct: 110 AEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 169
Query: 178 VKRAVPKEF-----SPGPSRSSMIGYNNFGFN--RPTNLLNSFAQR----YNLSPAGGFG 226
VK+AVPKE G SRSS G G R N L+ YN G G
Sbjct: 170 VKKAVPKEDIHSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGGGGYNSYGGYGGG 229
Query: 227 VRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPG 286
++ G GG S +GG+ YG G G S G G G G
Sbjct: 230 GGGGGGYNAYGGGGGG-SSYGGSDYGNGFGGFGSYSQHQSSYGPMKGGGGGGGG-GSSWG 287
Query: 287 GNSNRFSTPVGFSGGNGRGDS 307
G SN G+ GG G G S
Sbjct: 288 GRSNSGPYRGGYGGGGGYGGS 308
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 344 (126.2 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 90/211 (42%), Positives = 121/211 (57%)
Query: 12 GISWDTDE----ERLKEYFSRYGEVVEAVIMRDRAT--GRARGFGFVVFADPAVAERVI- 64
G SW E E L+EYF ++GEV E ++MRD T R RGFGFV F D A ++V+
Sbjct: 109 GPSWSEGECVVTEGLREYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLA 168
Query: 65 MDKHMIDGRTVEA--KKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDF 122
+H +D +TV+ K A PR Q + T RTKKIFVGGL+ T D
Sbjct: 169 QSRHELDSKTVQIDPKVAFPRRAQPKVQMVT----------RTKKIFVGGLSVNTTVEDV 218
Query: 123 KKYFDQFGTIT--DVVVMYDHNTQRPRG--FGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
K+YF+QF + D ++M+D T R RG FGF+T++SE+ V++V FHE+N KMV+V
Sbjct: 219 KQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEKVCEIHFHEINNKMVQV 278
Query: 179 --KRAVPKE-FSPGPS---RSSMIGYNNFGF 203
K+A PKE SP S RS ++ Y F
Sbjct: 279 ECKKAQPKEVMSPTGSARGRSRVMPYGMDAF 309
Score = 137 (53.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVV--EAVIMRDRATGRARG--FGFVVFADPAVAER 62
K+F+GG+S +T E +K+YF ++ +V +A++M D+ T R RG FGFV F + E+
Sbjct: 203 KIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEK 262
Query: 63 VI-MDKHMIDGRTV--EAKKAVPRD 84
V + H I+ + V E KKA P++
Sbjct: 263 VCEIHFHEINNKMVQVECKKAQPKE 287
Score = 43 (20.2 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
A GR + P+G + +G+ + G P + ++ S S
Sbjct: 295 ARGRSRVMPYGMDAFMLGIGMLGTGYPGFQATTYASRS 332
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 108/312 (34%), Positives = 156/312 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F +G + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LQKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 71
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123
+ H +DGR VE K+AV R+D L+ + + KKIFVGG+ TE +
Sbjct: 72 NARPHKVDGRVVEPKRAVSREDSQTLDAHLT----------VKKIFVGGIKEN-TEDHLR 120
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
YF+ +G I + +M D + + RGF F+T+D ++VD+++ K +H +NG EV++A+
Sbjct: 121 DYFE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK-YHTVNGHNCEVRKALS 178
Query: 184 K-EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGG 242
K E + S S+ G NFG N + R S + G G S G G
Sbjct: 179 KQEMASASSSQSLSGSGNFGGGCGGN-----SGRGGFSGSRGGGGNGGSGDGYSGFGNDG 233
Query: 243 ISPFGGAGY---GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFS 299
S FGG Y G N P GG NF G+ GP GG ++ +
Sbjct: 234 -SNFGGGSYNDFGTYNNQSSNFGPIKGG--NFG-----GKSSGPCGGGG--QYLAKLQNQ 283
Query: 300 GGNGRGDSVLSS 311
GG G G S SS
Sbjct: 284 GGYG-GSSSSSS 294
Score = 201 (75.8 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 41/95 (43%), Positives = 64/95 (67%)
Query: 94 SSIHSSPG-PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI 152
S + SP P + +K+F+GGL+ T+ + +F+ +GT+T VVM D NT+R RGFGF+
Sbjct: 1 SCLSQSPKEPEQLQKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFV 59
Query: 153 TYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFS 187
TY + E VD ++ H+++G++VE KRAV +E S
Sbjct: 60 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDS 94
Score = 76 (31.8 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 31/96 (32%), Positives = 41/96 (42%)
Query: 261 LSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNG 320
LS S++ S SL G GGNS R GFSG G G + S ++ +GN
Sbjct: 177 LSKQEMASASSSQSLSGSGNFGGGCGGNSGRG----GFSGSRGGGGNGGSGDGYSGFGND 232
Query: 321 SLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
N G GS N ++ N S N+GP+
Sbjct: 233 GSN-----------FGGGSYNDFGTYNNQSSNFGPI 257
Score = 42 (19.8 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 430 SATPELDGSGSFSYGLGTVSTNVAAKSSEG 459
S++ L GSG+F G G S S G
Sbjct: 186 SSSQSLSGSGNFGGGCGGNSGRGGFSGSRG 215
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 104/318 (32%), Positives = 151/318 (47%)
Query: 1 ME-SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAV 59
ME S L KLFIGG++ T E L+ +F +G + + V++ + T R+R FGFV +++
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 60 AERVIM-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGGLASTV 117
A+ + H +DG TVE K+AV R+D + PG + KK+FVGGL V
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDV 109
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE 177
E D ++F QFG + ++ D + + RGFGF+ + S +A D+ FH + G VE
Sbjct: 110 AEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVE 169
Query: 178 VKRAVPKE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSP 235
VK+AVPKE + G + G G R + L+ GG G + +
Sbjct: 170 VKKAVPKEDIHAGGGGARAARGGRGGGRGRGGGGGGGGRDQNGLAKGGGGGGGGYNSYG- 228
Query: 236 LATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFS-NSLGYGRML-------GPFPGG 287
G GG +GG G G G +GG ++S + YG M G GG
Sbjct: 229 ---GYGGYGAYGGGGGGGGSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSWGG 285
Query: 288 NSNRFSTPVGFSGGNGRG 305
SN G+ GG G G
Sbjct: 286 RSNSGPYRGGYGGGYGGG 303
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 95/281 (33%), Positives = 140/281 (49%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 25 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 84
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ + +H +DG+ ++ K+A ++ P KK+FVGGL+ +E
Sbjct: 85 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 128
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V ++L +H++ E+K
Sbjct: 129 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 188
Query: 181 AVPKEF------SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFS 234
A PKE R + G R ++ Q +N G+G +S +
Sbjct: 189 AQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYG 247
Query: 235 --PLATGRGGIS----PFGGAGYGVGMNLDGGLSPSYGGSS 269
+G GG +G GYG G G +YG +S
Sbjct: 248 GDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKAS 288
Score = 166 (63.5 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 17 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 76
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +VD+VL H+L+GK+++ KRA
Sbjct: 77 FKDAASVDKVLELKEHKLDGKLIDPKRA 104
Score = 58 (25.5 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 237 ATGRGGISPFG---GAGYGVGMN--LD---GGLSPSYGGSSNFSNSLGYGRMLGPFPGGN 288
A GRGG G G + G N D G + +YGG N+S GYG + G N
Sbjct: 210 AGGRGGARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS---GYGGY--DYTGYN 264
Query: 289 SNRFSTPVGFSGGNGR 304
+ G++ +G+
Sbjct: 265 YGNYGYGQGYADYSGQ 280
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 107/310 (34%), Positives = 150/310 (48%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFI G+S T +E L+ + + G +++ V+MRD T +RGFGF +A + V+
Sbjct: 13 LWKLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 73 NARPHKMDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 123 KKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
K YF +Q+ I + +M D + + RGF F+T+D + VD+++ + H +NG EV++A
Sbjct: 122 KDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDHEVRKA 181
Query: 182 VPKE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
+ K+ S S+ S G NFG R F N G F +G
Sbjct: 182 LSKQEMASASSSQRSRSGSGNFGGGRG----GGFGGNDNFGHGGNF------------SG 225
Query: 240 RGGISPF-GGAGYGV---GMNLDGGLSPSYGGSSNFSNSLGYGRM----LGPFPGGN-SN 290
RGG S GG GYG G N G ++GG ++ N GY + GP GGN
Sbjct: 226 RGGFSGSRGGGGYGSSGDGYNGFGNDGSNFGGGGSY-NDFGYYKNQSSNFGPMKGGNLGG 284
Query: 291 RFSTPVGFSG 300
R S P G G
Sbjct: 285 RSSGPFGGGG 294
Score = 192 (72.6 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 40/97 (41%), Positives = 59/97 (60%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + K+F+ GL+S T+ + + +Q G + D VVM D NT+ RGFGF T
Sbjct: 2 SKSESPKEPEQLWKLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD V++ H+++G++VE KRAV +E S P
Sbjct: 62 YATREDVDAVMNARPHKMDGRVVEPKRAVSREDSQRP 98
Score = 86 (35.3 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 36/91 (39%), Positives = 42/91 (46%)
Query: 193 SSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR-GGIS--PFGGA 249
SS GYN FG N +N + YN G+ S F P+ G GG S PFGG
Sbjct: 240 SSGDGYNGFG-NDGSNFGGGGS--YN---DFGYYKNQSSNFGPMKGGNLGGRSSGPFGGG 293
Query: 250 G-YGVGMNLDGGLSPSYGGSSNFSNSLGYGR 279
G Y + GG YGGS + SN G GR
Sbjct: 294 GQYFAKLRNQGG----YGGSRSSSN-YGNGR 319
Score = 84 (34.6 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 32/93 (34%), Positives = 38/93 (40%)
Query: 264 SYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLN 323
S GS NF G G G G+ FS GFSG G G S +N +GN N
Sbjct: 196 SRSGSGNFGGGRG-GGFGGNDNFGHGGNFSGRGGFSGSRGGGGYGSSGDGYNGFGNDGSN 254
Query: 324 SATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
F G GS N + N S N+GP+
Sbjct: 255 ----------FGGGGSYNDFGYYKNQSSNFGPM 277
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 95/281 (33%), Positives = 140/281 (49%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ + +H +DG+ ++ K+A ++ P KK+FVGGL+ +E
Sbjct: 204 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 247
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V ++L +H++ E+K
Sbjct: 248 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 307
Query: 181 AVPKEF------SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFS 234
A PKE R + G R ++ Q +N G+G +S +
Sbjct: 308 AQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYG 366
Query: 235 --PLATGRGGIS----PFGGAGYGVGMNLDGGLSPSYGGSS 269
+G GG +G GYG G G +YG +S
Sbjct: 367 GDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKAS 407
Score = 166 (63.5 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +VD+VL H+L+GK+++ KRA
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 58 (25.5 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 237 ATGRGGISPFG---GAGYGVGMN--LD---GGLSPSYGGSSNFSNSLGYGRMLGPFPGGN 288
A GRGG G G + G N D G + +YGG N+S GYG + G N
Sbjct: 329 AGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS---GYGGY--DYTGYN 383
Query: 289 SNRFSTPVGFSGGNGR 304
+ G++ +G+
Sbjct: 384 YGNYGYGQGYADYSGQ 399
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 95/281 (33%), Positives = 140/281 (49%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ + +H +DG+ ++ K+A ++ P KK+FVGGL+ +E
Sbjct: 204 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 247
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V ++L +H++ E+K
Sbjct: 248 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 307
Query: 181 AVPKEF------SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFS 234
A PKE R + G R ++ Q +N G+G +S +
Sbjct: 308 AQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYG 366
Query: 235 --PLATGRGGIS----PFGGAGYGVGMNLDGGLSPSYGGSS 269
+G GG +G GYG G G +YG +S
Sbjct: 367 GDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKAS 407
Score = 166 (63.5 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +VD+VL H+L+GK+++ KRA
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 58 (25.5 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 237 ATGRGGISPFG---GAGYGVGMN--LD---GGLSPSYGGSSNFSNSLGYGRMLGPFPGGN 288
A GRGG G G + G N D G + +YGG N+S GYG + G N
Sbjct: 329 AGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS---GYGGY--DYTGYN 383
Query: 289 SNRFSTPVGFSGGNGR 304
+ G++ +G+
Sbjct: 384 YGNYGYGQGYADYSGQ 399
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 95/281 (33%), Positives = 140/281 (49%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ + +H +DG+ ++ K+A ++ P KK+FVGGL+ +E
Sbjct: 204 KVLELKEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEE 247
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V ++L +H++ E+K
Sbjct: 248 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 307
Query: 181 AVPKEF------SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFS 234
A PKE R + G R ++ Q +N G+G +S +
Sbjct: 308 AQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYG 366
Query: 235 --PLATGRGGIS----PFGGAGYGVGMNLDGGLSPSYGGSS 269
+G GG +G GYG G G +YG +S
Sbjct: 367 GDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKAS 407
Score = 166 (63.5 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +VD+VL H+L+GK+++ KRA
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRA 223
Score = 58 (25.5 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 237 ATGRGGISPFG---GAGYGVGMN--LD---GGLSPSYGGSSNFSNSLGYGRMLGPFPGGN 288
A GRGG G G + G N D G + +YGG N+S GYG + G N
Sbjct: 329 AGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS---GYGGY--DYTGYN 383
Query: 289 SNRFSTPVGFSGGNGR 304
+ G++ +G+
Sbjct: 384 YGNYGYGQGYADYSGQ 399
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 95/288 (32%), Positives = 143/288 (49%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GG+SWDT ++ LK+YF+++GEV + I D TGR+RGFGF++F +P E+V+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126
K ++ + P+ ++ P KKIFVGGL TE ++YF
Sbjct: 61 KE----HRLDGRLIDPK--------KAMAMKKDP----VKKIFVGGLNPEATEEKIREYF 104
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEF 186
+FG I + + D T + RGF FIT+ E+ V +VL K FH ++G E+K A PKE
Sbjct: 105 GEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEV 164
Query: 187 SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG-RGGISP 245
SS G ++G + +Q +N G+G + + G + G
Sbjct: 165 YQQQQFSSGGGRGSYGGRGRGGRGGAQSQNWNQ----GYGNYWNQGYGNQGYGYQQGYGG 220
Query: 246 FGGAGY-GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRF 292
+GG Y G G G P Y S +N YG+ P GG+ N +
Sbjct: 221 YGGYDYSGYGYY---GYGPGYDYSQGSAN---YGKT--PRRGGHQNNY 260
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 93/275 (33%), Positives = 138/275 (50%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A ++V+ +
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +DG+ ++ K+A ++ P KK+FVGGL+ +E K+Y
Sbjct: 112 KEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKEY 155
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG I ++ + D T RGF FITY EE V ++L +H++ E+K A PKE
Sbjct: 156 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
Query: 186 F------SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLA-T 238
R + G R ++ Q +N G+G +S + + +
Sbjct: 216 VYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYGDESYS 274
Query: 239 GRGGIS----PFGGAGYGVGMNLDGGLSPSYGGSS 269
G GG +G GYG G G +YG +S
Sbjct: 275 GYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKAS 309
Score = 163 (62.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+ + +VD
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 162 RVLHKTFHELNGKMVEVKRA 181
+VL H+L+GK+++ KRA
Sbjct: 107 KVLELKEHKLDGKLIDPKRA 126
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 93/275 (33%), Positives = 138/275 (50%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A ++V+ +
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +DG+ ++ K+A ++ P KK+FVGGL+ +E K+Y
Sbjct: 112 KEHKLDGKLIDPKRA-------------KALKGKEPP---KKVFVGGLSPDTSEEQIKEY 155
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG I ++ + D T RGF FITY EE V ++L +H++ E+K A PKE
Sbjct: 156 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
Query: 186 F------SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLA-T 238
R + G R ++ Q +N G+G +S + + +
Sbjct: 216 VYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNNYYDQGYG-NYNSAYGDESYS 274
Query: 239 GRGGIS----PFGGAGYGVGMNLDGGLSPSYGGSS 269
G GG +G GYG G G +YG +S
Sbjct: 275 GYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKAS 309
Score = 163 (62.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+ + +VD
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 162 RVLHKTFHELNGKMVEVKRA 181
+VL H+L+GK+++ KRA
Sbjct: 107 KVLELKEHKLDGKLIDPKRA 126
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 105/311 (33%), Positives = 155/311 (49%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE-RV 63
L KLFIGG+S + E L+ + ++G + + V+ RD T +RGFGF+ V E
Sbjct: 13 LRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDA 72
Query: 64 IMDK--HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
M+ H +DGR VE K+AV R+D PG T KK FVGG+ E
Sbjct: 73 AMNARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKTFVGGIKEDTEEH 121
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ YF+Q+G I + +M D + + R F F+T+D ++VD+++ + +H +NG EVK+
Sbjct: 122 HLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVKK 180
Query: 181 AVPKE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
A+ K+ S S+ G NFG ++F + N S GGFG S+
Sbjct: 181 ALSKQEQTSVSSSQRDRSGSGNFGHGGGFGGNDNFGRGGNFSGGGGFG---GSQGGGGYG 237
Query: 239 GRGGI-SPFG--GAGYGVGMNL-DGGLSPSYGG-SSNFSNSLGY---GRMLGPFPGGNSN 290
G G + S FG G+ +G G + D G +Y SSNF + G GR GP+ GG+
Sbjct: 238 GSGDVYSGFGNDGSNFGGGRSYNDFG---NYNNQSSNFGPTKGGNFGGRSSGPYGGGDYG 294
Query: 291 RFSTPVGFSGG 301
S + GG
Sbjct: 295 GSSNSSSYGGG 305
Score = 186 (70.5 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S SS P + +K+F+GGL+ +T + + +Q+G +TD VV D NT+ RGFGFIT
Sbjct: 2 SKSESSKDPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFIT 61
Query: 154 YDSE--EAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
+ E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 CTTATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 100
Score = 89 (36.4 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 40/119 (33%), Positives = 50/119 (42%)
Query: 218 NLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPS---YGGSSNFSNS 274
N GGFG + F GRGG + GG G+G G GG S Y G N ++
Sbjct: 202 NFGHGGGFGG--NDNF-----GRGG-NFSGGGGFG-GSQGGGGYGGSGDVYSGFGNDGSN 252
Query: 275 LGYGRMLGPFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPG 332
G GR F GN N S+ G GGN G S +G G ++N +S G
Sbjct: 253 FGGGRSYNDF--GNYNNQSSNFGPTKGGNFGGRSS------GPYGGGDYGGSSNSSSYG 303
Score = 81 (33.6 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 35/114 (30%), Positives = 55/114 (48%)
Query: 247 GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFP-GGNSNRFSTPVGFSGGNGRG 305
G G+G G GG + ++G NFS G+G G GG+ + +S GF GN G
Sbjct: 201 GNFGHGGGF---GG-NDNFGRGGNFSGGGGFGGSQGGGGYGGSGDVYS---GF--GND-G 250
Query: 306 DSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNF---EVSFGNNSVNWG 354
+ ++N +GN + N ++N P G F G SG + + +NS ++G
Sbjct: 251 SNFGGGRSYNDFGNYN-NQSSNFGPTKGGNFGGRSSGPYGGGDYGGSSNSSSYG 303
Score = 76 (31.8 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 33/90 (36%), Positives = 41/90 (45%)
Query: 267 GSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSAT 326
GS NF G+G G F GGN N F FSGG G G S G+G + S
Sbjct: 199 GSGNF----GHG---GGF-GGNDN-FGRGGNFSGGGGFGGSQGGG---GYGGSGDVYSGF 246
Query: 327 NPASPGAFLGSG-SGNFEVSFGNNSVNWGP 355
+ G+ G G S N ++ N S N+GP
Sbjct: 247 G--NDGSNFGGGRSYNDFGNYNNQSSNFGP 274
Score = 58 (25.5 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 30/82 (36%), Positives = 36/82 (43%)
Query: 198 YNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNL 257
Y+ FG N +N + YN G + S F P +GG FGG G
Sbjct: 243 YSGFG-NDGSNF--GGGRSYN--DFGNYN-NQSSNFGPT---KGG--NFGGRSSGP---Y 288
Query: 258 DGGLSPSYGGSSNFSNSLGYGR 279
GG YGGSSN S+S G GR
Sbjct: 289 GGG---DYGGSSN-SSSYGGGR 306
Score = 44 (20.5 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYNVTSRQSTRGTT 476
GSG G G +N S G+YN ++ S G T
Sbjct: 238 GSGDVYSGFGNDGSNFGGGRSYNDFGNYN--NQSSNFGPT 275
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 336 (123.3 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 73/196 (37%), Positives = 109/196 (55%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GG+SWDT ++ LK+YF+++GEV + I D TGR+RGFGF++F +P E+V+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126
K ++ + P+ ++ P KKIFVGGL TE ++YF
Sbjct: 61 KE----HRLDGRLIDPK--------KAMAMKKDP----VKKIFVGGLNPEATEEKIREYF 104
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEF 186
+FG I + + D T + RGF FIT+ E+ V +VL K FH ++G E+K A PKE
Sbjct: 105 GEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEV 164
Query: 187 SPGPSRSSMIGYNNFG 202
SS G ++G
Sbjct: 165 YQQQQFSSGGGRGSYG 180
Score = 40 (19.1 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 12/35 (34%), Positives = 12/35 (34%)
Query: 298 FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPG 332
FS G GRG G GS N P G
Sbjct: 170 FSSGGGRGSYGGRGRGGRGGGQGSANYGKTPRRGG 204
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 333 (122.3 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 70/185 (37%), Positives = 110/185 (59%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+FIGG+SWDT ++ LK+YFS++G+VV+ + D TGR+RGFGFV+F + +
Sbjct: 72 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 131
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H ++G+ ++ K+A + M + P KKIFVGGL+ E
Sbjct: 132 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 175
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K
Sbjct: 176 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 235
Query: 181 AVPKE 185
A+ KE
Sbjct: 236 AMSKE 240
Score = 42 (19.8 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGG 248
GPS++ GY+N+ +N+ S+ YN GG+G + ++ G G S
Sbjct: 264 GPSQNWNQGYSNY-WNQG---YGSYG--YNSQGYGGYGGYDYTGYNSYY-GYGDYSN-QQ 315
Query: 249 AGYGVGMNLDGGLSPSY 265
+GYG ++ GG SY
Sbjct: 316 SGYGK-VSRRGGHQNSY 331
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 77/205 (37%), Positives = 119/205 (58%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 32 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 91
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 92 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHL 140
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 141 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 200
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNR 205
K+ S S+ G NFG R
Sbjct: 201 SKQEMASASSSQRGRSGSGNFGGGR 225
Score = 223 (83.6 bits), Expect = 8.1e-18, P = 8.1e-18
Identities = 41/89 (46%), Positives = 63/89 (70%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 29 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 88
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
++ H+++G++VE KRAV +E S P
Sbjct: 89 AAMNARPHKVDGRVVEPKRAVSREDSQRP 117
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 336 (123.3 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 71/185 (38%), Positives = 110/185 (59%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + +
Sbjct: 41 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 100
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H ++G+ ++ K+A + M + P KKIFVGGL+ E
Sbjct: 101 KVMDQKEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 144
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K
Sbjct: 145 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 204
Query: 181 AVPKE 185
A+ KE
Sbjct: 205 AMSKE 209
Score = 38 (18.4 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
GPS++ GY+N+ +N+ ++ YN GG+G
Sbjct: 233 GPSQNWNQGYSNY-WNQG---YGNYG--YNSQGYGGYG 264
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 324 (119.1 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 93/271 (34%), Positives = 140/271 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F + G + + V+MRD T +RGFGFV + + +
Sbjct: 35 LRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAM 94
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG KKIFVGG+ E +
Sbjct: 95 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLMVKKIFVGGIKEDTEEYNL 143
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G T+ + ++ RGF F+T+D ++ VD+++ + H +NG EVKRA+
Sbjct: 144 RDYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRAL 201
Query: 183 PKEFSP--GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGG-----FGVRMDSRFSP 235
K+ P G R G +NF R N F R GG +G D R+
Sbjct: 202 SKQEMPCAGSQRGRGGGSSNF-MGRGGN----FGGREGYGGGGGGSRGSYGGSGD-RYHG 255
Query: 236 LATGRGGISPFGGAGYGVGMNLDGGLSPSYG 266
G GG + GG Y + GG PS+G
Sbjct: 256 FG-GDGG-NYGGGPSYSSRGSYGGG-GPSFG 283
Score = 201 (75.8 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
Identities = 45/126 (35%), Positives = 70/126 (55%)
Query: 71 DGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG 130
DGR E K + ++ M H P + +K+F+GGL+ T+ +++F++ G
Sbjct: 7 DGRKKERKGKGRKKERRMEG------HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRG 60
Query: 131 TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
T+TD VVM D T+ RGFGF+T E VD + H+++G++VE KRAV +E S P
Sbjct: 61 TLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 120
Query: 191 SRSSMI 196
M+
Sbjct: 121 GAHLMV 126
Score = 72 (30.4 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
Identities = 34/114 (29%), Positives = 44/114 (38%)
Query: 239 GRGGISPFGGAG--Y----GVGMNLDGGLSPSYGGSSNFSN---SLGYG-RM-LGPFPGG 287
G G +GG+G Y G G N GG PSY ++ S G G R+ +G G
Sbjct: 239 GGGSRGSYGGSGDRYHGFGGDGGNYGGG--PSYSSRGSYGGGGPSFGTGGRVGVGGVDVG 296
Query: 288 NSNRFSTPVGFSGGNGRG---DSVLSSTTWNVWGNGSLNSATNPASPGAFLGSG 338
+ VG GG+G G D +W+ G A A G G G
Sbjct: 297 GVDVGGVDVGGGGGDGDGGDGDGGSHVHSWSAGAGGPEGGAAGGAGGGTARGGG 350
Score = 60 (26.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 33/116 (28%), Positives = 44/116 (37%)
Query: 245 PFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGR----MLGPFPGGNSNRFSTPVGFSG 300
P G+ G G GG S G NF GYG G + GG+ +R+ G G
Sbjct: 207 PCAGSQRGRG----GGSSNFMGRGGNFGGREGYGGGGGGSRGSY-GGSGDRYHG-FGGDG 260
Query: 301 GN-GRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGS-GNFEVSFGNNSVNWG 354
GN G G S S ++ G S + G +G G +V G + G
Sbjct: 261 GNYGGGPSYSSRGSYG-GGGPSFGTGGRVGVGGVDVGGVDVGGVDVGGGGGDGDGG 315
Score = 50 (22.7 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 24/63 (38%), Positives = 25/63 (39%)
Query: 241 GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSG 300
GG+ GG G G DGG GGS S S G G G GG T G G
Sbjct: 301 GGVDVGGGGGDG-----DGG--DGDGGSHVHSWSAGAGGPEGGAAGGAGG--GTARG-GG 350
Query: 301 GNG 303
G G
Sbjct: 351 GEG 353
Score = 43 (20.2 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYG 278
+ G GG P GGA G G GG + GG + G G
Sbjct: 327 SAGAGG--PEGGAAGGAG----GGTARGGGGEGAAGGAGGAG 362
Score = 40 (19.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSS 269
A G GG + GG G G GG + GG++
Sbjct: 338 AGGAGGGTARGGGGEGAA----GGAGGAGGGTA 366
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 84/250 (33%), Positives = 130/250 (52%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFI G+S++T +E L+ +F R+G + + V+MRD T R RGFGFV + + +
Sbjct: 6 LWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAM 65
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D PG T KKIFVG + E
Sbjct: 66 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGSIKEDTEEHHL 114
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
++YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 115 REYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 174
Query: 183 PKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGG 242
K+ S SS G N G N+ + + G FG R + G+
Sbjct: 175 SKQEMASAS-SSQRGRNGSGNYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYG--GGGQYF 231
Query: 243 ISPFGGAGYG 252
+P GYG
Sbjct: 232 ANPRNQGGYG 241
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 98/274 (35%), Positives = 141/274 (51%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D A E+V+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H +DGR ++ KKA+ ++ P KKIFVGGL TE ++Y
Sbjct: 61 KEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEEKIREY 103
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNG-KMVEVKRAVPK 184
F +FG I + + D + + RGF FIT+ EE V +VL K FH ++G K + +P
Sbjct: 104 FGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKRCGLGVGLPL 163
Query: 185 EFSP-----GPSRSSMIGYNNFGFNR---PTNLLNSFAQRYNLSPAGGFGVRMDSRFSPL 236
+ SR N G + S+ Q Y G+G + + P
Sbjct: 164 QLMTQRWFLSVSRCERDKKGNRGSGGGGGSGSQSQSWNQGYGNYWNQGYGYQQG--YGP- 220
Query: 237 ATGRGGI--SPFGGAGYGVGMNLDGGLSPSYGGS 268
G GG SP+G GYG G + G S +YG S
Sbjct: 221 --GYGGYDYSPYGYYGYGPGYDYSQG-STNYGKS 251
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 97/295 (32%), Positives = 148/295 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T E L+ +F ++G + + V+MRD T +RGFGFV +A V E
Sbjct: 13 LRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYA--TVKEVDA 70
Query: 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFK 123
H +DGR VE K+AV R+D PG T +KIFVGG+ E +
Sbjct: 71 ARSHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVRKIFVGGIKEDTEEHHLR 119
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
YF Q+G I + +M D + + RGF +T+D + D+++ + ++ +NG EV++A+
Sbjct: 120 DYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDK-DKIVIQKYYIVNGHNCEVRKALS 178
Query: 184 K-EFSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGF-GVRMDSRFSPLATG 239
K E + S G NFG R ++F N S GGF G + + G
Sbjct: 179 KQEMASASSSRGRSGSGNFGGGRGGGFGGNDNFGHGGNFSGQGGFSGSQSGGGYGGSGDG 238
Query: 240 RGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFST 294
G FG G G G + +G +N S++ G + G F GG+S+ + +
Sbjct: 239 YNG---FGNDGGNFG---GGKIYNDFGNYNNQSSNFGPMKG-GNFGGGSSSSYGS 286
Score = 216 (81.1 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 71/240 (29%), Positives = 109/240 (45%)
Query: 73 RTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGR---TKKIFVGGLASTVTESDFKKYFDQF 129
+ V+A ++ D + + + S S PG +KIFVGG+ E + YF Q+
Sbjct: 66 KEVDAARSHKVDGRVVEPKRAVSREDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQY 125
Query: 130 GTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK-EFSP 188
G I + +M D + + RGF +T+D + D+++ + ++ +NG EV++A+ K E +
Sbjct: 126 GKIEVIEIMTDRGSGKKRGFASVTFDDHDK-DKIVIQKYYIVNGHNCEVRKALSKQEMAS 184
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGG 248
S G NFG R F N G F + FS +G GG +GG
Sbjct: 185 ASSSRGRSGSGNFGGGRG----GGFGGNDNFGHGGNFSGQ--GGFSGSQSG-GG---YGG 234
Query: 249 AGYGV-GMNLDGGLSPSYGGS---SNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGR 304
+G G G DGG ++GG ++F N GP GGN F S G+GR
Sbjct: 235 SGDGYNGFGNDGG---NFGGGKIYNDFGNYNNQSSNFGPMKGGN---FGGGSSSSYGSGR 288
Score = 192 (72.6 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 40/98 (40%), Positives = 60/98 (61%)
Query: 93 TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI 152
TS S P + +K+F+GGL+ T + +F+Q+G + D VVM D NT+ RGFGF+
Sbjct: 1 TSKSESPIEPEQLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFV 60
Query: 153 TYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
TY + + VD H+++G++VE KRAV +E S P
Sbjct: 61 TYATVKEVDAARS---HKVDGRVVEPKRAVSREDSQRP 95
Score = 91 (37.1 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 35/107 (32%), Positives = 51/107 (47%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGY-GRMLGPFPGGNSNRFSTPVG 297
GR G FGG G G G GG + ++G NFS G+ G G GG+ + ++ G
Sbjct: 190 GRSGSGNFGG-GRGGGF---GG-NDNFGHGGNFSGQGGFSGSQSGGGYGGSGDGYNG-FG 243
Query: 298 FSGGNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNF 342
GGN G + +N +GN + N ++N P G F G S ++
Sbjct: 244 NDGGNFGGGKI-----YNDFGNYN-NQSSNFGPMKGGNFGGGSSSSY 284
Score = 68 (29.0 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 28/90 (31%), Positives = 36/90 (40%)
Query: 267 GSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSAT 326
GS NF G G G G+ FS GFSG G S +N +GN N
Sbjct: 193 GSGNFGGGRG-GGFGGNDNFGHGGNFSGQGGFSGSQSGGGYGGSGDGYNGFGNDGGNFG- 250
Query: 327 NPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
G + + GN+ N S N+GP+
Sbjct: 251 -----GGKIYNDFGNYN----NQSSNFGPM 271
Score = 58 (25.5 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 288 NSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFG 347
+S+R + G GG GRG + + GN S + + G G GSG+ FG
Sbjct: 186 SSSRGRSGSGNFGG-GRGGGFGGNDNFGHGGNFSGQGGFSGSQSGGGYG-GSGDGYNGFG 243
Query: 348 NNSVNWG 354
N+ N+G
Sbjct: 244 NDGGNFG 250
Score = 43 (20.2 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 254 GMNLDGGLSPSYGGSSNF 271
G N GG S SYG F
Sbjct: 273 GGNFGGGSSSSYGSGRRF 290
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 68/179 (37%), Positives = 113/179 (63%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KL + GI WD D + LK+Y S++G++ + ++M+DR+TGR+RGFG+V FA A+ +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126
+H + R +E K A P+++ P + +IFV + S+V+ESDF+ +F
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQ-----------PAK-KVTRIFVARIPSSVSESDFRSHF 111
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
+++G ITD+ + D+N+++ RG GFIT+ S ++V+ ++ T H+L G V V RA PKE
Sbjct: 112 ERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPKE 169
Score = 157 (60.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 35/96 (36%), Positives = 52/96 (54%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+G + + + L++YF R+G + +A I +D RGFGFV FA+ VA+RV
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP 102
H I G+ V A P D+ + SS+ SS P
Sbjct: 301 SHEICGQEVAIDSATPLDEAGP-SAGASSMLSSSRP 335
Score = 152 (58.6 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 47/146 (32%), Positives = 68/146 (46%)
Query: 103 GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162
G KIFVG L + D + YF +FG I D + D RGFGF+T+ DR
Sbjct: 237 GIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADR 296
Query: 163 VLHKTFHELNGKMVEVKRAVP-KEFSPGPSRSSMIGYNN---FG-FNRPTNLLNSFAQRY 217
V ++ HE+ G+ V + A P E P SSM+ + FG + P + +F + Y
Sbjct: 297 VARRS-HEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGP---MRAFGRMY 352
Query: 218 N-LS-PAGGFGV------RMDSRFSP 235
+S G+G+ R D R+ P
Sbjct: 353 GGMSLDDWGYGMPNARPSRPDRRYRP 378
Score = 147 (56.8 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+ V G+ + K Y +FG + D +VM D +T R RGFG++T+ S E L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSR 192
K H L +++EVK A PKE P++
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAK 88
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 93/277 (33%), Positives = 140/277 (50%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ + D TGR+RGFGFV+F + E
Sbjct: 50 EEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVE 109
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+VI K H ++G+ ++ KKA + M + P KKIFVGGL+ E
Sbjct: 110 KVITQKEHKLNGKVIDPKKA-----KAMKTKE-------P----VKKIFVGGLSPDTPEE 153
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YFD +G + + + ++ T + RGF FIT+ EE V +++ K +H + EVK
Sbjct: 154 KIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVKV 213
Query: 181 AVPKE-FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
A+ KE + GY + G R N + Q Y G+G + ++ G
Sbjct: 214 AMSKEQYQQQQQWGGRGGYTSRGRGRGGPNQN-WNQGYGNYWNQGYGNYGNYGYNNQGYG 272
Query: 240 RGGISPFGGA----GYGVGMNLDGGLSPSY--GGSSN 270
G + G GYG N G S GG N
Sbjct: 273 GYGGYDYSGYNNYYGYGDYSNQQSGYGKSQRRGGHQN 309
Score = 179 (68.1 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I +S K+FVGGL+ T+ D K YF +FG + D + D T R RGFGF+
Sbjct: 42 SKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVL 101
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ E+V++V+ + H+LNGK+++ K+A
Sbjct: 102 FKEAESVEKVITQKEHKLNGKVIDPKKA 129
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 102/312 (32%), Positives = 158/312 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFI G+S++T +E L+ +F ++G + V+MRD T R+RGFGFV+FA + +
Sbjct: 13 LWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123
+ + ++GR +E K+ V R+D R + + KKIFVGG+ E +
Sbjct: 73 NARPNKVNGRVLEPKRFVSREDSQ---RPAAYL-------TVKKIFVGGIKEDTEEHE-- 120
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
YF+Q+G + VM D + + RGF F+T+D+ ++VD+++ + +H +NG EV++A+
Sbjct: 121 DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKALL 180
Query: 184 KE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG-VRMDSRFSPLATGR 240
K+ S S+ G NFG R + ++ + GFG R + A G
Sbjct: 181 KQEMASASFSQRGQSGSGNFGGGRGGGFGGNDNFDHDNHWSRGFGGSRSGGGYGGNADGY 240
Query: 241 GGISPFGGA-GYGVGMNLDGGLSPSYGG-SSNFSNSLGY---GRMLGPFPGGNSNRFSTP 295
G G G GV N D G +Y SSNF + G GR GP+ GG F+ P
Sbjct: 241 NGFDNDGSNFGGGVSYN-DFG---NYNNQSSNFGPTKGGNFGGRNSGPY-GGGGQYFAKP 295
Query: 296 VGFSGGNGRGDS 307
G G +S
Sbjct: 296 RNQGGYGGSSNS 307
Score = 185 (70.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 37/98 (37%), Positives = 61/98 (62%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + K+F+ GL+ T+ + +F+Q+GT+T VVM D NT+R RGFGF+
Sbjct: 2 SKSESPKEPEQLWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVM 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPS 191
+ + E VD ++ +++NG+++E KR V +E S P+
Sbjct: 62 FATVEEVDAAMNARPNKVNGRVLEPKRFVSREDSQRPA 99
Score = 73 (30.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 34/97 (35%), Positives = 43/97 (44%)
Query: 189 GPSRSSMIGY--NNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR-GGIS- 244
G SRS GY N G+N N ++F + + G + S F P G GG +
Sbjct: 225 GGSRSGG-GYGGNADGYNGFDNDGSNFGGGVSYNDFGNYN-NQSSNFGPTKGGNFGGRNS 282
Query: 245 -PFGGAG-YGVGMNLDGGLSPSYGGSSNFSNSLGYGR 279
P+GG G Y GG YGGSSN S+ G R
Sbjct: 283 GPYGGGGQYFAKPRNQGG----YGGSSN-SSCYGSSR 314
Score = 53 (23.7 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 31/90 (34%), Positives = 36/90 (40%)
Query: 267 GSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWG-NGSLNSA 325
GS NF G G F GGN N F +S G G G N G NG N
Sbjct: 196 GSGNFGGGRG-----GGF-GGNDN-FDHDNHWSRGFG-GSRSGGGYGGNADGYNGFDNDG 247
Query: 326 TNPASPGAFLGSGSGNFEVSFGNNSVNWGP 355
+N F G S N ++ N S N+GP
Sbjct: 248 SN------FGGGVSYNDFGNYNNQSSNFGP 271
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 100/321 (31%), Positives = 155/321 (48%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
M + L KLF+GG++ T +E L+ +F +YG++ + V++ ++ R+R FGFV ++ A
Sbjct: 1 MTNQLCKLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEA 60
Query: 61 ERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTE 119
+ + + H++DG V+ K+AV R+D + + KKIFVGGL + +
Sbjct: 61 DAAMSARPHIVDGNNVDLKRAVAREDAG----KPEML------AKVKKIFVGGLKDDIED 110
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
+ YF QFG I V+ D +T + RGFGF+ +D ++ D+ + FH + G VEVK
Sbjct: 111 EHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVK 170
Query: 180 RAVPKEF--SPGPSRSSMIGY-----NNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSR 232
+A+ K+ S G R G + FG N + + N GFG +S
Sbjct: 171 KALTKQEMQSTGGGRGGRGGRGMGRGSGFGGGGRGGYYNDYGYQNN-----GFG--NNSG 223
Query: 233 FSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSL--GYG------RMLGPF 284
+ GG S G GYG G N YG ++ ++ GYG + GP+
Sbjct: 224 YDSQNGYGGGYSDQMGGGYGNG-NGYSDFGEGYGQQASGYGAMKTGYGNYSSGRQSSGPY 282
Query: 285 PGGNSNRFSTPVGFSGGNGRG 305
P G G SGG GRG
Sbjct: 283 PRGGGG------GGSGGYGRG 297
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 322 (118.4 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 68/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 158 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 201
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Score = 198 (74.8 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 41/113 (36%), Positives = 67/113 (59%)
Query: 71 DGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKYFDQ 128
+G ++A K +D+ + N+S HS + + K+F+GGL+ T+ D K YF +
Sbjct: 64 EGAKIDASKN--EEDEG--HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSK 119
Query: 129 FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
FG + D + D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 120 FGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 41 (19.5 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 213 FAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGG 248
+ Q+ GGF R R +G G +S GG
Sbjct: 263 YQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGG 298
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 322 (118.4 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 68/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 62 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 105
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 106 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 165
Score = 41 (19.5 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 213 FAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGG 248
+ Q+ GGF R R +G G +S GG
Sbjct: 167 YQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGG 202
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 323 (118.8 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 68/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 61 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 104
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 105 FGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 164
Score = 38 (18.4 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
GPS++ GY+N+ +N+ ++ YN GG+G
Sbjct: 188 GPSQNWNQGYSNY-WNQG---YGNYG--YNSQGYGGYG 219
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 319 (117.4 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 67/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++G+VV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 156 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 199
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
Score = 196 (74.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 40/116 (34%), Positives = 70/116 (60%)
Query: 71 DGRTVEAKKA---VPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKY 125
+G + EA+ A +++++ + N+S H+ + + K+F+GGL+ T+ D K Y
Sbjct: 55 EGGSTEAEGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDY 114
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
F +FG + D + D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 115 FSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 170
Score = 42 (19.8 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGG 248
GPS++ GY+N+ +N+ S+ YN GG+G + ++ G G S
Sbjct: 283 GPSQNWNQGYSNY-WNQG---YGSYG--YNSQGYGGYGGYDYTGYNSYY-GYGDYSN-QQ 334
Query: 249 AGYGVGMNLDGGLSPSY 265
+GYG ++ GG SY
Sbjct: 335 SGYGK-VSRRGGHQNSY 350
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 319 (117.4 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 67/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++G+VV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 156 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 199
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
Score = 196 (74.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 40/116 (34%), Positives = 70/116 (60%)
Query: 71 DGRTVEAKKA---VPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKY 125
+G + EA+ A +++++ + N+S H+ + + K+F+GGL+ T+ D K Y
Sbjct: 55 EGGSTEAEGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDY 114
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
F +FG + D + D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 115 FSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 170
Score = 42 (19.8 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGG 248
GPS++ GY+N+ +N+ S+ YN GG+G + ++ G G S
Sbjct: 283 GPSQNWNQGYSNY-WNQG---YGSYG--YNSQGYGGYGGYDYTGYNSYY-GYGDYSN-QQ 334
Query: 249 AGYGVGMNLDGGLSPSY 265
+GYG ++ GG SY
Sbjct: 335 SGYGK-VSRRGGHQNSY 350
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 100/346 (28%), Positives = 158/346 (45%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+ T E+ L+ Y+ ++G++ + V++RD + R+RGFGFV F+ A + +
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTESDFKK 124
+ H +DG+ V+ K+AV R++ PG KK+FVGG+ E +
Sbjct: 82 RPHSVDGKVVDPKRAVAREESE-----------KPGAHLAVKKLFVGGIKEDTEEHHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++G I + ++ D + + RGFGF+T+D + VD+++ + +H +NG EV +A+ +
Sbjct: 131 YFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKALSR 190
Query: 185 -EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
E S +S G + G +F GG+ R L G G
Sbjct: 191 QEMQEVQSSTSGRG-GHIGLGDSCGGGGNFGAGPGRKYKGGYNGY--GRGPGLGDGYYG- 246
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNG 303
+GG G G G N G P YGG GYG G SN G N
Sbjct: 247 --YGG-GPGGG-NF--GSCPGYGGGGYGGGGPGYGNQKRG--SGGSNYGGGNCGSGIYND 298
Query: 304 RGDSVLSSTTWNVWGNGSLNSATNPASP--GAFLGSGSGNFEVSFG 347
G+ + + NG+ + N +P G G G +G
Sbjct: 299 FGNYNQQPSNYGPMKNGNFGESRNMVAPYGGGNYGPGGSGGNGGYG 344
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 322 (118.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 68/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 158 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 201
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Score = 198 (74.8 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 41/113 (36%), Positives = 67/113 (59%)
Query: 71 DGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKYFDQ 128
+G ++A K +D+ + N+S HS + + K+F+GGL+ T+ D K YF +
Sbjct: 64 EGAKIDASKN--EEDEG--HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSK 119
Query: 129 FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
FG + D + D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 120 FGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 38 (18.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
GPS++ GY+N+ +N+ ++ YN GG+G
Sbjct: 285 GPSQNWNQGYSNY-WNQG---YGNYG--YNSQGYGGYG 316
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 322 (118.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 68/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 158 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 201
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Score = 198 (74.8 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 41/113 (36%), Positives = 67/113 (59%)
Query: 71 DGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKYFDQ 128
+G ++A K +D+ + N+S HS + + K+F+GGL+ T+ D K YF +
Sbjct: 64 EGAKIDASKN--EEDEG--HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSK 119
Query: 129 FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
FG + D + D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 120 FGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 38 (18.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
GPS++ GY+N+ +N+ ++ YN GG+G
Sbjct: 285 GPSQNWNQGYSNY-WNQG---YGNYG--YNSQGYGGYG 316
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 322 (118.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 68/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 158 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 201
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Score = 198 (74.8 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 41/113 (36%), Positives = 67/113 (59%)
Query: 71 DGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKYFDQ 128
+G ++A K +D+ + N+S HS + + K+F+GGL+ T+ D K YF +
Sbjct: 64 EGAKIDASKN--EEDEG--HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSK 119
Query: 129 FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
FG + D + D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 120 FGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 38 (18.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
GPS++ GY+N+ +N+ ++ YN GG+G
Sbjct: 285 GPSQNWNQGYSNY-WNQG---YGNYG--YNSQGYGGYG 316
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 322 (118.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 68/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 158 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 201
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Score = 196 (74.1 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 40/116 (34%), Positives = 70/116 (60%)
Query: 71 DGRTVEAKKA---VPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKY 125
+G + EA+ A +++++ + N+S H+ + + K+F+GGL+ T+ D K Y
Sbjct: 57 EGGSAEAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDY 116
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
F +FG + D + D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 117 FSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 38 (18.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
GPS++ GY+N+ +N+ ++ YN GG+G
Sbjct: 285 GPSQNWNQGYSNY-WNQG---YGNYG--YNSQGYGGYG 316
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 322 (118.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 68/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 91 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 134
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 135 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 194
Score = 192 (72.6 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 92 NTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGF 149
N+S HS + + K+F+GGL+ T+ D K YF +FG + D + D T R RGF
Sbjct: 14 NSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGF 73
Query: 150 GFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
GF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 74 GFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 105
Score = 38 (18.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
GPS++ GY+N+ +N+ ++ YN GG+G
Sbjct: 218 GPSQNWNQGYSNY-WNQG---YGNYG--YNSQGYGGYG 249
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 319 (117.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 67/180 (37%), Positives = 107/180 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++G+VV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 156 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 199
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
Score = 196 (74.1 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 40/116 (34%), Positives = 70/116 (60%)
Query: 71 DGRTVEAKKA---VPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKY 125
+G + EA+ A +++++ + N+S H+ + + K+F+GGL+ T+ D K Y
Sbjct: 55 EGGSTEAEGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDY 114
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
F +FG + D + D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 115 FSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 170
Score = 41 (19.5 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 213 FAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGG 248
+ Q+ GGF R R +G G +S GG
Sbjct: 261 YQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGG 296
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 98/344 (28%), Positives = 160/344 (46%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+ +T EE L+ Y+ ++G++ + V++RD ++ R+RGFGFV+F+ A + +
Sbjct: 22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTESDFKK 124
+ H IDGR V +K+ VPR++ PG TKK+FVGG+ TE +
Sbjct: 82 RPHSIDGRVVASKRVVPREESG-----------KPGACVTTKKLFVGGIKEDTTERHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++GTI + ++ + R FGF+T+D + VD+++ + +H +NG ++++A+ +
Sbjct: 131 YFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSR 188
Query: 185 EFSPGPSRSSMIGYN-NFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRG-G 242
+ +SS G + GF + N G R S G G
Sbjct: 189 Q-GMQEVQSSRRGRGRHVGFGDIPSGGGGGGGGGNFGAGPGRNFRGGSEGYARGPVLGDG 247
Query: 243 ISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGN 302
+GG G GG P YGG GY + F G N G N
Sbjct: 248 YYEYGGGPAGGSF---GGC-PGYGGGYG-DRGAGYSNLSSGFGDGYGNYGGGDYGEGNYN 302
Query: 303 GRGDSVLSSTTWNVWGNGSLNSATNPASP---GAFLGSGSGNFE 343
G+ + + NG+ + + +P G + GSG E
Sbjct: 303 AFGNYNQDPSNYGPVKNGNFGESRHMVAPYGGGDYGPGGSGGNE 346
Score = 188 (71.2 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL S E + Y+ Q+G +TD VV+ D ++QR RGFGF+ + S VD +
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++V KR VP+E S P
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKP 105
Score = 88 (36.0 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 46/145 (31%), Positives = 59/145 (40%)
Query: 219 LSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNS--L 275
LS G V+ R G G I P GG G G G N G ++ GGS ++ L
Sbjct: 186 LSRQGMQEVQSSRRGRGRHVGFGDI-PSGGGGGGGGGNFGAGPGRNFRGGSEGYARGPVL 244
Query: 276 GYGRM-LGPFPGGNSNRFSTPVGFSGG---NGRGDSVLSSTTWNVWGNGSLNSATNPASP 331
G G G P G S F G+ GG G G S LSS + +GN
Sbjct: 245 GDGYYEYGGGPAGGS--FGGCPGYGGGYGDRGAGYSNLSSGFGDGYGNYG---------- 292
Query: 332 GAFLGSGSGNFEVSFGNNSVNWGPV 356
G G G+ N ++ + N+GPV
Sbjct: 293 GGDYGEGNYNAFGNYNQDPSNYGPV 317
Score = 60 (26.2 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 33/122 (27%), Positives = 45/122 (36%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPV 296
A R G+ + G G ++ G PS GG + G G PG N
Sbjct: 185 ALSRQGMQEVQSSRRGRGRHVGFGDIPSGGGGGGGGGNFGAG------PGRNFR------ 232
Query: 297 GFSGGNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAF--LGSGSGNFEVSFGNNSVN 352
G S G RG VL + +G G + P G + G+G N FG+ N
Sbjct: 233 GGSEGYARGP-VLGDGYYE-YGGGPAGGSFGGCPGYGGGYGDRGAGYSNLSSGFGDGYGN 290
Query: 353 WG 354
+G
Sbjct: 291 YG 292
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 96/343 (27%), Positives = 157/343 (45%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+ +T EE L+ Y+ ++G++ + V++RD ++ R+RGFGFV+F+ A + +
Sbjct: 22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTESDFKK 124
+ H IDGR V +K+ VPR++ PG TKK+FVGG+ TE +
Sbjct: 82 RPHSIDGRVVASKRVVPREESG-----------KPGACVTTKKLFVGGIKEDTTERHLRD 130
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+++GTI + ++ + R FGF+T+D + VD+++ + +H +NG ++++A+ +
Sbjct: 131 YFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSR 188
Query: 185 EFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRG-GI 243
+ S + GF + N G R S G G
Sbjct: 189 QGMQEVQSSRRRRGRHVGFGDIPSGGGGGGGGGNFGAGPGRNFRGGSEGYARGPVLGDGY 248
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNG 303
+GG G GG P YGG GY + F G N G N
Sbjct: 249 YEYGGGPAGGSF---GGC-PGYGGGYG-DRGAGYSNLSSGFGDGYGNYGGGDYGEGNYNA 303
Query: 304 RGDSVLSSTTWNVWGNGSLNSATNPASP---GAFLGSGSGNFE 343
G+ + + NG+ + + +P G + GSG E
Sbjct: 304 FGNYNQDPSNYGPVKNGNFGESRHMVAPYGGGDYGPGGSGGNE 346
Score = 188 (71.2 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL S E + Y+ Q+G +TD VV+ D ++QR RGFGF+ + S VD +
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++V KR VP+E S P
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKP 105
Score = 88 (36.0 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 46/145 (31%), Positives = 59/145 (40%)
Query: 219 LSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSY-GGSSNFSNS--L 275
LS G V+ R G G I P GG G G G N G ++ GGS ++ L
Sbjct: 186 LSRQGMQEVQSSRRRRGRHVGFGDI-PSGGGGGGGGGNFGAGPGRNFRGGSEGYARGPVL 244
Query: 276 GYGRM-LGPFPGGNSNRFSTPVGFSGG---NGRGDSVLSSTTWNVWGNGSLNSATNPASP 331
G G G P G S F G+ GG G G S LSS + +GN
Sbjct: 245 GDGYYEYGGGPAGGS--FGGCPGYGGGYGDRGAGYSNLSSGFGDGYGNYG---------- 292
Query: 332 GAFLGSGSGNFEVSFGNNSVNWGPV 356
G G G+ N ++ + N+GPV
Sbjct: 293 GGDYGEGNYNAFGNYNQDPSNYGPV 317
Score = 52 (23.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 32/122 (26%), Positives = 44/122 (36%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPV 296
A R G+ + G ++ G PS GG + G G PG N
Sbjct: 185 ALSRQGMQEVQSSRRRRGRHVGFGDIPSGGGGGGGGGNFGAG------PGRNFR------ 232
Query: 297 GFSGGNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAF--LGSGSGNFEVSFGNNSVN 352
G S G RG VL + +G G + P G + G+G N FG+ N
Sbjct: 233 GGSEGYARGP-VLGDGYYE-YGGGPAGGSFGGCPGYGGGYGDRGAGYSNLSSGFGDGYGN 290
Query: 353 WG 354
+G
Sbjct: 291 YG 292
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 100/320 (31%), Positives = 144/320 (45%)
Query: 38 MRDRATGRARGFGFVVFADPAVAERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSI 96
MRD A+ R+RGFGFV F+ A + + + H IDGR VE K+AV R++
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESG--------- 51
Query: 97 HSSPGPGRT-KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
PG T KK+FVGG+ E + YF+++G I + ++ D + + RGFGF+T+D
Sbjct: 52 --KPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 109
Query: 156 SEEAVDRVLHKTFHELNGKMVEVKRAVPK-EFSPGPSRSSMIGYNNFGFNRPTNLLNSFA 214
+ VD+++ + +H +NG EV++A+ + E S S G NFGF +S
Sbjct: 110 DHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRG-GNFGFG------DSRG 162
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNF--S 272
N P G R S +GRG + G G G G GG SP YGG
Sbjct: 163 GGGNFGPGPGSNFRGGS--DGYGSGRGFGDGYNGYGGGPGGGNFGG-SPGYGGGRGGYGG 219
Query: 273 NSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASP- 331
GYG G + GG N G N G+ + + +G+ + N P
Sbjct: 220 GGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPY 279
Query: 332 -GAFLGSGSGNFEVSFGNNS 350
G G G +G S
Sbjct: 280 GGGNYGPGGSGGSGGYGGRS 299
Score = 195 (73.7 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 43/126 (34%), Positives = 70/126 (55%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLF+GGI DT+E L++YF YG++ I+ DR +G+ RGFGFV F D +++++
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 120
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H I+G E +KA+ R + + + S + G G ++ GG S+F+
Sbjct: 121 KYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRG--GGGNFGPGPGSNFRGG 178
Query: 126 FDQFGT 131
D +G+
Sbjct: 179 SDGYGS 184
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 318 (117.0 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 67/179 (37%), Positives = 106/179 (59%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+ K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 68 -HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126
H ++G+ ++ K+A + M + P KKIFVGGL+ E ++YF
Sbjct: 61 EHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREYF 104
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 105 GAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 163
Score = 148 (57.2 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 43/150 (28%), Positives = 71/150 (47%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GG+S DT EE+++EYF +GEV + D T + RGF F+ F + ++++
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H + E K A+ ++ Q + S G R + GG S + Y
Sbjct: 145 KYHNVGLSKCEIKVAMSKE-QYQQQQQWGSRGGFVGRARGR----GGGPSQNWNQGYSNY 199
Query: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
++Q +G Y +N+Q G+G Y
Sbjct: 200 WNQGYGN-------YGYNSQGYGGYGGYDY 222
Score = 38 (18.4 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 189 GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
GPS++ GY+N+ +N+ ++ YN GG+G
Sbjct: 187 GPSQNWNQGYSNY-WNQG---YGNYG--YNSQGYGGYG 218
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 90/263 (34%), Positives = 139/263 (52%)
Query: 1 MESD-LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAV 59
ME + + KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A
Sbjct: 1 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 60 AERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVT 118
+ + + H ++GR VE K+AV R+D R + + KKIFVGG+
Sbjct: 61 VDAAMNARPHKVNGRVVEPKRAVSREDSQ---RPDAYL-------TVKKIFVGGIKEDTE 110
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E + YF Q+G + ++ D + + RGF F+T+D ++VD+++ + +H +NG EV
Sbjct: 111 EHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEV 170
Query: 179 KRAVPKEFSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPL 236
++A P R G NFG R ++F + N S GGFG SR
Sbjct: 171 RKA------PSNQRGRS-GSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR---- 216
Query: 237 ATGRGGISPFGGAGYGVGMNLDG 259
G GG G GY G++ DG
Sbjct: 217 --GGGGYGG-SGDGYN-GIDNDG 235
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 96/285 (33%), Positives = 146/285 (51%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T ++ L+ +F ++ + + V+MRD + R+RGFG + +A + +
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H +DGR VE K AV R+D + PG T KKIFVGG E +
Sbjct: 61 RPHKVDGRVVEPKVAVSREDSHR-----------PGAHLTVKKIFVGGSKEDTEEHHLRV 109
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+Q+G I + +M D + + RGF F+T+D +++VD ++ + +H +NG EV++A+ K
Sbjct: 110 YFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKALLK 169
Query: 185 -EFSPGPS-----RSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
E + S R + G+ FG + YN GFG S F
Sbjct: 170 QEMASASSSQRGRRRDVSGHGGFGVSHGGGGYGGSGDGYN-----GFG-NDGSNFGGGMK 223
Query: 239 GR--GGIS--PFGGAG-YGVGMNLDGGLSPSYGGSSNFSNSLGYG 278
G GG S P+GG G Y GG +GGSS+ S+S G G
Sbjct: 224 GGNFGGRSSGPYGGGGQYFAKPRNQGG----HGGSSS-SSSYGSG 263
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 309 (113.8 bits), Expect = 9.2e-31, Sum P(2) = 9.2e-31
Identities = 75/202 (37%), Positives = 116/202 (57%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFV-VFADPAVAERV 63
L KLFIG +S++T ++ L+E+F ++G ++ V+MRD R+R FGFV ++ +
Sbjct: 17 LRKLFIGCLSFETTDDSLREHFEKWG-TLDCVVMRDLQIKRSRSFGFVSTYSCVKEVDAA 75
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESD 121
+ + H +DG VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 76 MCARPHKVDGHVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYN 124
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ YF+++G I + VM D + + RGF F+T+D + VD+++ K +H +NG EVK+A
Sbjct: 125 LRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQK-YHTINGHNYEVKKA 183
Query: 182 VPK-EFSPGPSRSSMIGYNNFG 202
V K E S+ G NFG
Sbjct: 184 VSKQEMQSAGSQRGRGG--NFG 203
Score = 161 (61.7 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 35/95 (36%), Positives = 57/95 (60%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI-TYD 155
H P + +K+F+G L+ T+ +++F+++GT+ D VVM D +R R FGF+ TY
Sbjct: 9 HDPKEPEQLRKLFIGCLSFETTDDSLREHFEKWGTL-DCVVMRDLQIKRSRSFGFVSTYS 67
Query: 156 SEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
+ VD + H+++G +VE KRAV +E S P
Sbjct: 68 CVKEVDAAMCARPHKVDGHVVEPKRAVSREDSVKP 102
Score = 47 (21.6 bits), Expect = 9.2e-31, Sum P(2) = 9.2e-31
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 239 GRGGISPFGGAGYGVGMNLDGG 260
G GG GG GYG G DGG
Sbjct: 204 GGGGNFGHGGNGYGYG---DGG 222
Score = 45 (20.9 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 322 LNSATNPASPGAFLGSGSGNFEVSFGNNSVNWG 354
+ SA + G G G GNF G N +G
Sbjct: 189 MQSAGSQRGRGGNFGGGGGNF--GHGGNGYGYG 219
Score = 41 (19.5 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 13/28 (46%), Positives = 13/28 (46%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYG 266
GRGG FGG G G GG YG
Sbjct: 197 GRGG--NFGGGGGNFG---HGGNGYGYG 219
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 87/267 (32%), Positives = 139/267 (52%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIG +S +T EE L Y+ ++G + + V++RD A+ ++R FGF+ F+ A + +
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+ H IDG+ V K+AVPR+D L + KK+FVGG+ + E + Y
Sbjct: 82 RPHFIDGKMVMPKRAVPREDHGKLGALIT----------VKKLFVGGITEDMKEHHLRDY 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK- 184
F+++G I + ++ D + + RGFGFIT+D + VD+++ + H +NG EV++A+ +
Sbjct: 132 FEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAEVRKALSRQ 191
Query: 185 EFSPGPS-RSSMIGYNNFG-FNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGG 242
E G RS G G F+ + + R AGG+G +F + G GG
Sbjct: 192 ERQEGQHLRSRGEGDVGLGYFHGVGGNVGAGRGRNFRGGAGGYG--RGRQFGDGSHGYGG 249
Query: 243 ISPFGGAGYGVGMNLDGGLSPSYGGSS 269
+ GG +GV GG GG S
Sbjct: 250 RA--GGGSWGVRPGYGGGRGGCSGGGS 274
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 94/268 (35%), Positives = 136/268 (50%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GG+SWDT ++ LK+YF+++GEV + I D TGR+RGFGF++F D AE V D
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKD---AESV--D 119
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLN-RNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K +E K+ R D +++ + ++ P KKIFVGGL E ++Y
Sbjct: 120 K------VLEHKEH--RLDGRLIDPKKAMAMKKDP----IKKIFVGGLNPEAGEDQIREY 167
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+ FG I + + D T + RGF FIT+ E+ V ++L K FH ++G E+K A PKE
Sbjct: 168 FETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKIAQPKE 227
Query: 186 F------SPGPSRSSMIGYNNFGFNRPTNL-LNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
G S G G + N N + Q Y GG+G + +
Sbjct: 228 VYQQQYGGRGGSFGGRGGRGGKGQGQNWNQGYNYWNQGYGNQGYGGYGQQGYGGY----- 282
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYG 266
G S +G GYG G + G S +YG
Sbjct: 283 GNYDYSGYGYYGYGPGYDYSQG-SANYG 309
Score = 190 (71.9 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 57/187 (30%), Positives = 82/187 (43%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
KKIFVGGL E ++YF+ FG I + + D T + RGF FIT+ E+ V ++L
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGF 225
K FH ++G E+K A PKE + G ++ Q YN G +
Sbjct: 208 KKFHNVSGSKCEIKIAQPKEVYQQQYGGRGGSFGGRGGRGGKGQGQNWNQGYNYWNQG-Y 266
Query: 226 GVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFP 285
G + + G GG + +GYG G P Y S +N YG+ P
Sbjct: 267 GNQGYGGYGQ--QGYGGYGNYDYSGYGYY-----GYGPGYDYSQGSAN---YGK--APRR 314
Query: 286 GGNSNRF 292
G + N +
Sbjct: 315 GSHQNNY 321
>UNIPROTKB|F1P645 [details] [associations]
symbol:LOC607505 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03007023 Ensembl:ENSCAFT00000000618 OMA:EMARASP
Uniprot:F1P645
Length = 317
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 106/312 (33%), Positives = 152/312 (48%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E L KLFIGG+S++T +E L+ +F R+G + + V+ R+ R+RGFG V P E
Sbjct: 9 EPQLRKLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVV----PRHLE 64
Query: 62 RVIMDKHMIDGR-TVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTE 119
V ++ R T E+ K Q +R S PG T KKIFVGG+ E
Sbjct: 65 EVAAARNPGPTRWTEESWK------QRAASREDSQ---RPGAHLTVKKIFVGGIKGDAEE 115
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
+ F+Q G + +M D + + RGF F+T+D ++VD+++ + +H +NG EV+
Sbjct: 116 HHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHGCEVR 175
Query: 180 RAVPKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSP 235
+A+ K+ PS+ G NFG R + +SF + N S GGFG SR
Sbjct: 176 KALSKQEMARASPSQRGRSGSGNFGGGRGGGVGGNDSFGRGGNFSGRGGFG---GSR--- 229
Query: 236 LATGRGGISPFGGAG---YGVG---MNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN- 288
G GG +GG+G +G G N GG SY N++N GP GGN
Sbjct: 230 ---GGGG---YGGSGDDCHGFGNDRSNFGGG--GSYNDFGNYNNQ---SSNFGPMKGGNF 278
Query: 289 SNRFSTPVGFSG 300
R S P G G
Sbjct: 279 GGRSSGPYGGGG 290
Score = 115 (45.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
+S SP + +K+F+GGL+ T+ + +F+++G + D VV + N +R RGFG +
Sbjct: 1 TSKSESPEEPQLRKLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVVP 60
Query: 154 YDSEE 158
EE
Sbjct: 61 RHLEE 65
Score = 74 (31.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 32/98 (32%), Positives = 39/98 (39%)
Query: 262 SPSY---GGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWG 318
SPS GS NF G G + G G FS GF G G G S + +G
Sbjct: 187 SPSQRGRSGSGNFGGGRG-GGVGGNDSFGRGGNFSGRGGFGGSRGGGGYGGSGDDCHGFG 245
Query: 319 NGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
N N F G GS N ++ N S N+GP+
Sbjct: 246 NDRSN----------FGGGGSYNDFGNYNNQSSNFGPM 273
Score = 68 (29.0 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 35/130 (26%), Positives = 46/130 (35%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ G G + S R S G +G G N GG GG+ +F
Sbjct: 162 QKYHT--VNGHGCEVRKALSKQEMARASPSQRGRSGSG---NFGGGRGGGVGGNDSFGRG 216
Query: 275 LGY-GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
+ GR G F G G GG+G + N G GS N N + +
Sbjct: 217 GNFSGR--GGFGGSRGG------GGYGGSGDDCHGFGNDRSNFGGGGSYNDFGNYNNQSS 268
Query: 334 FLGS-GSGNF 342
G GNF
Sbjct: 269 NFGPMKGGNF 278
Score = 45 (20.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG +G G +N S G+YN
Sbjct: 236 GSGDDCHGFGNDRSNFGGGGSYNDFGNYN 264
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 103/301 (34%), Positives = 150/301 (49%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S+ T +E L+ +F ++G + + V MRD +RGFGFV + + +
Sbjct: 13 LWKLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFVTYTTVEELDAAM 71
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGR---TKKIFVGGLASTVTES 120
+ H +DG VE K+AV R+D SP PG KKIFVG V E
Sbjct: 72 NARPHKVDGGVVEPKRAVSRED-------------SPRPGAHLTVKKIFVG-----VKED 113
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+F+Q+G I + +M D + + RGF F+T+D ++VD ++ + +H +NG EV++
Sbjct: 114 TEGHHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVRK 173
Query: 181 AVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR 240
A+ + S SS G + G++ + S Q Y + G+G R GR
Sbjct: 174 ALSNQELASAS-SSQRGCSP-GYSGGSRGYGS-GQGYG-TQGSGYGGRGSYDSYNDGGGR 229
Query: 241 GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG-YGRMLGPFPGGNSNRFSTPVGFS 299
GG FGG G G N GG SY N++N L +G+M G GG R S P G
Sbjct: 230 GG---FGG---GSGSNFGGG--GSYNDFGNYNNQLSNFGQMKGGNFGG---RISGPYGGG 278
Query: 300 G 300
G
Sbjct: 279 G 279
Score = 198 (74.8 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 40/97 (41%), Positives = 62/97 (63%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S+ P + K+F+GGL+ T+ + +F+Q+GT+TD V M D N + RGFGF+T
Sbjct: 2 SKSESTKEPEQLWKLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFVT 60
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E +D ++ H+++G +VE KRAV +E SP P
Sbjct: 61 YTTVEELDAAMNARPHKVDGGVVEPKRAVSREDSPRP 97
Score = 78 (32.5 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 260 GLSPSY-GGSSNFSNSLGYGRMLGPFPG-GNSNRFSTPVGFSG-GNGRGDSVLSSTTWNV 316
G SP Y GGS + + GYG + G G+ + ++ G G G G G + ++N
Sbjct: 189 GCSPGYSGGSRGYGSGQGYGTQGSGYGGRGSYDSYNDGGGRGGFGGGSGSNFGGGGSYND 248
Query: 317 WGNGSLNSATN--PASPGAFLGSGSGNF 342
+GN + N +N G F G SG +
Sbjct: 249 FGNYN-NQLSNFGQMKGGNFGGRISGPY 275
Score = 60 (26.2 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 288 NSNRFSTPVGFSGGN-GRGDSVLSSTTWNVWGN-GSLNSATNPASPGAFLGSGSG-NF 342
+S R +P G+SGG+ G G T + +G GS +S + G F G GSG NF
Sbjct: 185 SSQRGCSP-GYSGGSRGYGSGQGYGTQGSGYGGRGSYDSYNDGGGRGGF-GGGSGSNF 240
Score = 59 (25.8 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 25/81 (30%), Positives = 31/81 (38%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGG-----AGYGV--GMNLDGGLSPSYGGSSNF---- 271
GGFG S F G G + FG + +G G N G +S YGG +
Sbjct: 230 GGFGGGSGSNFG----GGGSYNDFGNYNNQLSNFGQMKGGNFGGRISGPYGGGGQYFAKP 285
Query: 272 SNSLGYGRMLGPFPGGNSNRF 292
N GYG G+ RF
Sbjct: 286 RNQGGYGGSSRSSSYGSDRRF 306
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 99/282 (35%), Positives = 140/282 (49%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T + L+E+F ++G + + V+MRD +RGF FV ++ V+
Sbjct: 36 LRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVM 95
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTESDF 122
+ H + G VE K+AV R+D SI PG +KIFVGG+ E +
Sbjct: 96 CARPHKVVGCVVEPKRAVSRED---------SI--IPGAHLMVEKIFVGGIKEDTEEYNL 144
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK-RA 181
+ YF+++G I + VM D + + RGF F+T+D+ + VD+V+ K +H +NG EVK +
Sbjct: 145 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQK-YHTVNGHNCEVKEQE 203
Query: 182 VPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRG 241
+P S G R G NF R N F R GG SR S G G
Sbjct: 204 MP---SAGSQRGHGGGSGNF-MGRGGN----FGGRGGYGGGGG-----GSRGS-YGGGDG 249
Query: 242 GISPFGG-AGYGVGMNLD----GGLSPSYGGSSNFSNSLGYG 278
G + FGG AG+G GG P YG S G G
Sbjct: 250 GFNGFGGDAGHGGRRGYSRGGYGGGGPGYGNQDGGSGGGGGG 291
Score = 182 (69.1 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 38/100 (38%), Positives = 59/100 (59%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D + RGF F+TY
Sbjct: 28 HDPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSC 87
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMI 196
E V V+ H++ G +VE KRAV +E S P M+
Sbjct: 88 VEEVGAVMCARPHKVVGCVVEPKRAVSREDSIIPGAHLMV 127
Score = 87 (35.7 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 24/68 (35%), Positives = 30/68 (44%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGF 298
GRGG GG G DGG + +GG + GY R G + GG + G
Sbjct: 229 GRGGYGGGGGGSRGSYGGGDGGFN-GFGGDAGHGGRRGYSR--GGYGGGGPG-YGNQDGG 284
Query: 299 SGGNGRGD 306
SGG G G+
Sbjct: 285 SGGGGGGE 292
Score = 56 (24.8 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 276 GYGRMLGPFPGGNSNRFSTPVGFSGGNG--RGDSVLSSTTWNVWGNGSLNSATNPASPGA 333
G+G G F G N F G+ GG G RG +N +G + + S G
Sbjct: 212 GHGGGSGNFMGRGGN-FGGRGGYGGGGGGSRGSYGGGDGGFNGFGGDAGHGGRRGYSRGG 270
Query: 334 FLGSGSG 340
+ G G G
Sbjct: 271 YGGGGPG 277
Score = 52 (23.4 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 266 GGSSNFSNSLG-YGRMLGPFPGGNSNRFSTPVGFSGGNGRG 305
GGS NF G +G G GG +R S G G NG G
Sbjct: 215 GGSGNFMGRGGNFGGRGGYGGGGGGSRGSYGGGDGGFNGFG 255
Score = 37 (18.1 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 336 GSGSGNFEVSFGN 348
G GSGNF GN
Sbjct: 214 GGGSGNFMGRGGN 226
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 78/223 (34%), Positives = 120/223 (53%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD- 66
L IGG+S++T ++ L+E+ ++G + + V+M D T +RGFGFV ++ + +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKKY 125
H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E + + Y
Sbjct: 61 PHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNLRDY 109
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+++G I + VM D + + RGF F+T+D + VD+++ + H +N EVK+AV K+
Sbjct: 110 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSKQ 169
Query: 186 F--SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
S GP R G NF R N Y + GG+G
Sbjct: 170 EMQSAGPQRGHGGGSGNF-MGRGGNFGRG-GPGYG-NQGGGYG 209
Score = 175 (66.7 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GGI DT+E L++YF +YG++ +M DR +G+ RGF FV F D ++++
Sbjct: 91 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQ 150
Query: 67 KH-MIDGRTVEAKKAVPRDD 85
+H I+ E KKAV + +
Sbjct: 151 EHHAINRHNCEVKKAVSKQE 170
Score = 45 (20.9 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 239 GRGGISPFGGAGYGVGMNLDGG 260
GRGG GG GYG N GG
Sbjct: 189 GRGGNFGRGGPGYG---NQGGG 207
Score = 43 (20.2 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 329 ASPGAFLGSGSGNFEVSFGNNSVNWGP 355
A P G GSGNF + G N GP
Sbjct: 174 AGPQRGHGGGSGNF-MGRGGNFGRGGP 199
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 72/201 (35%), Positives = 114/201 (56%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S+ T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKK 124
+ H +DGR VE K+AV R+D PG T KKIFVG E +
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSRR-----------PGAHLTVKKIFVG---EDTEEHHLRD 113
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+ K
Sbjct: 114 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 173
Query: 185 E--FSPGPSRSSMIGYNNFGF 203
+ S S+ G + G+
Sbjct: 174 QEMASASSSQRGRSGQSGRGY 194
Score = 219 (82.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 44/116 (37%), Positives = 71/116 (61%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 3 PEQLLKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRY 217
++ H+++G++VE KRAV +E S P + G + + L + ++Y
Sbjct: 63 AAMNARPHKVDGRVVEPKRAVSREDSRRPGAHLTVKKIFVGEDTEEHHLRDYFEQY 118
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 94/306 (30%), Positives = 144/306 (47%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T E L+ +F + G + + V MRD T +RGFGFV +A +
Sbjct: 27 LQKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAAT 86
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123
+ H +D R VE K+AV R+D + + + E +
Sbjct: 87 NARPHKVD-RVVEPKRAVSREDSQRPGAHLTMKKKEEEEEEEDD-------NNTEEYHLR 138
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 139 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 198
Query: 184 KE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLATG 239
K+ S + ++ NFG + ++F N S GGF SR G
Sbjct: 199 KQEMASASAKEAKVVLERNFGGGGGGGVGGNDNFGSGGNFSGQGGFD---GSR------G 249
Query: 240 RGGISPFGGAGYGVGMNLDGGLSPSYGGSSN-FSNSLGYGRMLGPFPGGNSNRFSTPVGF 298
GG +GG+G G + G + GGS N F N GP GGN T G
Sbjct: 250 GGG---YGGSGDGYNRFGNDGSNFGGGGSCNDFGNYNNQSSNFGPIKGGNFG--GTSSGP 304
Query: 299 SGGNGR 304
GG G+
Sbjct: 305 YGGGGQ 310
Score = 190 (71.9 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 41/109 (37%), Positives = 62/109 (56%)
Query: 82 PRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH 141
P D + + S S P + +K+F+GGL+ T + +F+Q G +TD V M D
Sbjct: 4 PASDSHGWEQIFSMSESPKDPEQLQKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDP 63
Query: 142 NTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
NT+ RGFGF+TY + E VD + H+++ ++VE KRAV +E S P
Sbjct: 64 NTKHSRGFGFVTYATMEEVDAATNARPHKVD-RVVEPKRAVSREDSQRP 111
Score = 84 (34.6 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 35/99 (35%), Positives = 44/99 (44%)
Query: 247 GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGN-GRG 305
GG G GVG N + G ++ G F S G G G G NRF G G N G G
Sbjct: 220 GGGGGGVGGNDNFGSGGNFSGQGGFDGSRGGGGYGGS--GDGYNRF----GNDGSNFGGG 273
Query: 306 DSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGSGNF 342
S N +GN + N ++N P G F G+ SG +
Sbjct: 274 GSC------NDFGNYN-NQSSNFGPIKGGNFGGTSSGPY 305
Score = 74 (31.1 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 28/87 (32%), Positives = 36/87 (41%)
Query: 270 NFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPA 329
NF G G + G G+ FS GF G G G S +N +GN N
Sbjct: 217 NFGGG-GGGGVGGNDNFGSGGNFSGQGGFDGSRGGGGYGGSGDGYNRFGNDGSN------ 269
Query: 330 SPGAFLGSGSGNFEVSFGNNSVNWGPV 356
F G GS N ++ N S N+GP+
Sbjct: 270 ----FGGGGSCNDFGNYNNQSSNFGPI 292
Score = 73 (30.8 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 29/80 (36%), Positives = 36/80 (45%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR-GGIS--PFGGAG-YG 252
GYN FG N +N F + + G + S F P+ G GG S P+GG G Y
Sbjct: 259 GYNRFG-NDGSN----FGGGGSCNDFGNYN-NQSSNFGPIKGGNFGGTSSGPYGGGGQYF 312
Query: 253 VGMNLDGGLSPSYGGSSNFS 272
GG YGGSS+ S
Sbjct: 313 AKPRNQGG----YGGSSSSS 328
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 103/319 (32%), Positives = 154/319 (48%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFI G+S++ +E L+ +F ++G + + V+MRD T +RGFG + D A+ R
Sbjct: 13 LQKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAMEEVDAAMNSRPC 72
Query: 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG---RTKKIFVGGLASTVTESD 121
+ R +E K+AV ++D SP PG KKIFVGG+ E
Sbjct: 73 K----VGRRVLEPKRAVSQED-------------SPRPGVLLTVKKIFVGGIKEDTEEHH 115
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ YF+Q+G I + M D + + RGF F+T+D ++VD+++ + +H NG V++
Sbjct: 116 LRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHAANGHNRVVRKT 175
Query: 182 VPKE--FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLA 237
+ K+ S S+ G NFG ++F + N S GGF SR +
Sbjct: 176 LWKQEMASASSSQRGRSGSGNFGGGCGGGFGGNDNFGRGGNFSGQGGFA---GSRGGGGS 232
Query: 238 TGRG-GISPFG--GAGYGVGMNL-DGGLSPSYGG-SSNFSNSLGY---GRMLGPFPGGNS 289
G G G + FG G+ +G G + D G +Y SSNF G GR GP+ GG
Sbjct: 233 GGSGDGYNEFGNDGSNFGGGRSYNDFG---NYNNQSSNFGPMKGGHFGGRSSGPY-GGGD 288
Query: 290 NRFSTPVGFSG-GNGRGDS 307
F+ P G G R S
Sbjct: 289 QYFAKPQNQGGCGGSRSSS 307
Score = 157 (60.3 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 34/89 (38%), Positives = 56/89 (62%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+ GL+ +T+ + +F+Q+GT+TD VVM D NT+ RGFG + E VD
Sbjct: 10 PEQLQKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAM-----EEVD 64
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
++ ++ +++E KRAV +E SP P
Sbjct: 65 AAMNSRPCKVGRRVLEPKRAVSQEDSPRP 93
Score = 83 (34.3 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 36/105 (34%), Positives = 45/105 (42%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF+G G G S S
Sbjct: 193 GSG-NFGGGCGGGFGGNDNF------GR------GGN---FSGQGGFAGSRGGGGSGGSG 236
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G S N ++ N S N+GP+
Sbjct: 237 DGYNEFGNDGSN----------FGGGRSYNDFGNYNNQSSNFGPM 271
Score = 72 (30.4 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 32/104 (30%), Positives = 40/104 (38%)
Query: 247 GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGD 306
G +G G N GG +GG+ NF G G G F G S G SGG+G G
Sbjct: 190 GRSGSG---NFGGGCGGGFGGNDNF----GRG---GNFSGQGGFAGSRGGGGSGGSGDGY 239
Query: 307 SVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNS 350
+ + N G S N N + + G G FG S
Sbjct: 240 NEFGNDGSNFGGGRSYNDFGNYNNQSSNFGPMKGGH---FGGRS 280
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 107/346 (30%), Positives = 158/346 (45%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F + G + + V+MRD T +RGFGFV + + +
Sbjct: 35 LRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAM 94
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTESDF 122
+ H +DGR VE K+AV R+D S+ PG KKIFVGG+ E +
Sbjct: 95 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLMVKKIFVGGIKEDTEEYNL 143
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++G T+ + ++ RGF F+T+D ++ VD+++ + H +NG EVKRA+
Sbjct: 144 RDYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRAL 201
Query: 183 PKEFSP--GPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGG-----FGVRMDSRFSP 235
K+ P G R G +NF R N F R GG +G D R+
Sbjct: 202 SKQEMPCAGSQRGRGGGSSNF-MGRGGN----FGGREGYGGGGGGSRGSYGGSGD-RYHG 255
Query: 236 LATGRGGISPFGGAGYGVGMNLDGGLSPSYG---GSSNFSNSLGYGRMLGPFPGGNSNRF 292
G GG + GG Y + GG P G G + G G G GG+
Sbjct: 256 FG-GDGG-NYGGGPSYSSRGSYGGG-GPRCGVDVGGVDVGGGGGDGDG-GDGDGGSHGGG 311
Query: 293 STPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSG 338
G+G D G +A GA G+G
Sbjct: 312 GDDDDDDDGDGDDDGGAGGPEGGAAGGAGGGTARGGGGEGAAGGAG 357
Score = 201 (75.8 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 45/126 (35%), Positives = 70/126 (55%)
Query: 71 DGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFG 130
DGR E K + ++ M H P + +K+F+GGL+ T+ +++F++ G
Sbjct: 7 DGRKKERKGKGRKKERRMEG------HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRG 60
Query: 131 TITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
T+TD VVM D T+ RGFGF+T E VD + H+++G++VE KRAV +E S P
Sbjct: 61 TLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 120
Query: 191 SRSSMI 196
M+
Sbjct: 121 GAHLMV 126
Score = 65 (27.9 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 32/114 (28%), Positives = 44/114 (38%)
Query: 245 PFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGR----MLGPFPGGNSNRFSTPVGFSG 300
P G+ G G GG S G NF GYG G + GG+ +R+ G G
Sbjct: 207 PCAGSQRGRG----GGSSNFMGRGGNFGGREGYGGGGGGSRGSY-GGSGDRYHG-FGGDG 260
Query: 301 GNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWG 354
GN G SS +G G + G +G G G+ + G+ + G
Sbjct: 261 GNYGGGPSYSSR--GSYGGGGPRCGVDVG--GVDVGGGGGDGDGGDGDGGSHGG 310
Score = 40 (19.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSS 269
A G GG + GG G G GG + GG++
Sbjct: 336 AGGAGGGTARGGGGEGAA----GGAGGAGGGTA 364
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 113/349 (32%), Positives = 158/349 (45%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F + G + + V+MRD T +RGFGFV ++ + +
Sbjct: 31 LRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAM 90
Query: 65 MD-KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123
H +DGR VE KKAV R+D L + KK FVGG+ E + K
Sbjct: 91 CAWLHKVDGRVVEPKKAVSREDSVKLGAHLM----------VKKTFVGGIKEDTEEYNLK 140
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
YF+++G I + M + + R RGF F + + VD+++ + H +NG EVK+A+
Sbjct: 141 DYFEKYGKI-ETEGMENRQSGR-RGFAFAIFGDHD-VDKIVVQKHHTINGHNCEVKKALS 197
Query: 184 K-EF-SPGPSRSSMIGYNNF-GFNRPTNLLNSFA-----QRYNLSPA-GGF-GVRMDS-R 232
K E S G R GY NF G + R + GG+ GV D
Sbjct: 198 KLEMHSAGSQRGRGGGYGNFMGCGGNFGGKGGYGGGGGGSRGSFGGGDGGYNGVGGDGGN 257
Query: 233 FS--PLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSN 290
+ P + RGG +GG G G G N GG GG S G GR G GG
Sbjct: 258 YGGGPGYSSRGG---YGGGGPGYG-NQGGGSGGGGGGGSGGGGREGRGR--GGGRGGGEG 311
Query: 291 RFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGS 339
S G GG + S G+G S G+ G GS
Sbjct: 312 NGSD--GNCGGEKK-KKYASGVLGLRGGSGGGGGGGGGGSSGSSGGGGS 357
Score = 207 (77.9 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 76/256 (29%), Positives = 112/256 (43%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ + +++F + GT+TD VVM D T+ RGFGF+TY E VD
Sbjct: 28 PEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVD 87
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNF--GFNRPTNLLN--SFAQRY 217
+ H+++G++VE K+AV +E S M+ F G T N + ++Y
Sbjct: 88 AAMCAWLHKVDGRVVEPKKAVSREDSVKLGAHLMVK-KTFVGGIKEDTEEYNLKDYFEKY 146
Query: 218 NLSPAGGFGVRMDSR--FSPLATGRGGISPFGGAGYGV--GMNLD--GGLSP--SYGGSS 269
G R R F+ G + + G N + LS + S
Sbjct: 147 GKIETEGMENRQSGRRGFAFAIFGDHDVDKIVVQKHHTINGHNCEVKKALSKLEMHSAGS 206
Query: 270 NFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNG--RGDSVLSSTTWN-VWGNGSLNSAT 326
GYG +G GGN F G+ GG G RG +N V G+G N
Sbjct: 207 QRGRGGGYGNFMGC--GGN---FGGKGGYGGGGGGSRGSFGGGDGGYNGVGGDGG-NYGG 260
Query: 327 NP--ASPGAFLGSGSG 340
P +S G + G G G
Sbjct: 261 GPGYSSRGGYGGGGPG 276
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 70/204 (34%), Positives = 113/204 (55%)
Query: 1 MESD-LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAV 59
ME + + KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A
Sbjct: 4 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 63
Query: 60 AERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVT 118
+ + + H +DGR VE K+AV +D PG KIFVG +
Sbjct: 64 VDAAMNARPHKVDGRVVEPKRAVSIEDSQR-----------PGAYLNMKIFVGAIKEDTE 112
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E + YF Q+G + ++ D + + RGF F+T+D ++VD+++ + +H +NG EV
Sbjct: 113 EHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEV 172
Query: 179 KRAVPKEFSPGPSRSSMIGYNNFG 202
++A K+ S SS G + G
Sbjct: 173 RKAPSKQEMASAS-SSQRGRSGSG 195
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 311 (114.5 bits), Expect = 9.3e-28, P = 9.3e-28
Identities = 69/179 (38%), Positives = 110/179 (61%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S DT +E+L YFS++G VV+A+++RD T +RGFGFV FA AE +
Sbjct: 69 LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 128
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESD-F 122
D+ H + G+TV++K+A+PR+ + + + P PG K+ + G+ + V D
Sbjct: 129 NDRPHKLGGKTVDSKRAIPREQMSSMIP-PPFFETDPAPGC--KLLLNGITNGVHSVDSL 185
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL-HKTF-HELNGKMVEVK 179
+ YF+ FGT+ V ++ +PRG GF+ Y+ +E+ DR L H + H +N + +EV+
Sbjct: 186 RVYFETFGTLDQVEIL-----GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEVR 239
Score = 193 (73.0 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 36/89 (40%), Positives = 57/89 (64%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H SP P + +K+F+GGL+ T+ YF Q+G + D +V+ D NT+ RGFGF+T+ S
Sbjct: 63 HDSP-P-QLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFAS 120
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
+ + ++ H+L GK V+ KRA+P+E
Sbjct: 121 IFSAESAMNDRPHKLGGKTVDSKRAIPRE 149
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 305 (112.4 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 68/184 (36%), Positives = 101/184 (54%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L K+FIGG+S T E L+ +FS++G V +AV++RD + +RGFGFV + DP E V
Sbjct: 31 LRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQ 90
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNM---LNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+ H ID + VE K A+PR D + S G +K+IF+GGL E+
Sbjct: 91 RARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDEN 150
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF QFG + V ++ D T R R FGF+ + + ++ L H + +VEVKR
Sbjct: 151 IVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKR 210
Query: 181 AVPK 184
+ K
Sbjct: 211 STQK 214
Score = 181 (68.8 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 37/98 (37%), Positives = 59/98 (60%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+KIF+GGL++ T + +F QFG + D VV+ D + RGFGF+TY ++V+ V
Sbjct: 32 RKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQR 91
Query: 166 KTFHELNGKMVEVKRAVPKE-FSPGPSRSSMIGYNNFG 202
H ++ K+VE K A+P++ F G S++G +FG
Sbjct: 92 ARPHTIDNKIVETKHALPRQDFKRGGGVGSVVG--SFG 127
Score = 136 (52.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 36/116 (31%), Positives = 56/116 (48%)
Query: 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
+K+IF+GGL E+ ++YF QFG + V ++ D T R R FGF+ + + ++ L
Sbjct: 135 SKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKAL 194
Query: 165 HKTFHELNGKMVEVKRAVPKE--------FS--------PGPSRSSMIGYNNFGFN 204
H + +VEVKR+ K FS P P+ + YNN +N
Sbjct: 195 APRKHWILQTLVEVKRSTQKADRRFRFPIFSSVRAGYIPPQPATADSYNYNNPNYN 250
Score = 42 (19.8 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 240 RGGISPFGGAGYGVGMNLDGGLSPSYG 266
RG GAG G+G L GG + G
Sbjct: 366 RGDADRMSGAGLGLG--LTGGAAVGVG 390
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 307 (113.1 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 84/268 (31%), Positives = 135/268 (50%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG++++T +E L+ +F ++G + E V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123
+ H +DGR VE ++AV R+D + L T KIFVGG+ E +
Sbjct: 73 NARPHKVDGRVVEPERAVSREDSHSL---------------TVKIFVGGIKEDTEEHYLR 117
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
Y +Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +N V++A+
Sbjct: 118 DYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYHTVNDHNC-VRKALS 176
Query: 184 KE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDS--RFSPLATG 239
K+ S S+ G N G+ R ++ + S GG G ++ +
Sbjct: 177 KQEMASASSSQRGRSGSGN-GYGRSSSYDSYNNGGGGGSFGGGSGSNFGGGGSYNDFSNY 235
Query: 240 RGGISPFGGAGYGVGMNLDGGLSPSYGG 267
S FG G N G S YGG
Sbjct: 236 NNQSSNFG---LMKGGNFGGRSSGPYGG 260
Score = 214 (80.4 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 45/126 (35%), Positives = 75/126 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL T+ + +F+Q+GT+T+ VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPT--NLLN 211
Y + E VD ++ H+++G++VE +RAV +E S + +G G T + L
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPERAVSREDSHSLTVKIFVG----GIKEDTEEHYLR 117
Query: 212 SFAQRY 217
++++Y
Sbjct: 118 DYSEQY 123
Score = 85 (35.0 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 34/90 (37%), Positives = 40/90 (44%)
Query: 212 SFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNF 271
S +QR G+G S + G GG S FGG G G N GG SY SN+
Sbjct: 184 SSSQRGRSGSGNGYG--RSSSYDSYNNGGGGGS-FGG---GSGSNFGGG--GSYNDFSNY 235
Query: 272 SN-SLGYGRMLGPFPGGNSNRFSTPVGFSG 300
+N S +G M G GG S S P G G
Sbjct: 236 NNQSSNFGLMKGGNFGGRS---SGPYGGGG 262
Score = 63 (27.2 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 300 GGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWG 354
G +G G+ S++++ + NG + S F G GS N ++ N S N+G
Sbjct: 189 GRSGSGNGYGRSSSYDSYNNGGGGGSFGGGSGSNFGGGGSYNDFSNYNNQSSNFG 243
Score = 47 (21.6 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 286 GGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLG-SGSGNF 342
G R S+ ++ G G G S + N G GS N +N + + G GNF
Sbjct: 194 GNGYGRSSSYDSYNNGGG-GGSFGGGSGSNFGGGGSYNDFSNYNNQSSNFGLMKGGNF 250
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 307 (113.1 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 90/279 (32%), Positives = 133/279 (47%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ F + G + + V+ RD R+RGFGFV +A E V
Sbjct: 13 LRKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYA---TVEEVK 69
Query: 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGR-TKKIFVGGLASTVTESDFK 123
H +D R VE K A+ R+D PG KK+FVGG+ E +
Sbjct: 70 GRPH-VDERVVEPKWAISREDSQR-----------PGAHLPVKKVFVGGIKEDTEEHHLR 117
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
YF+Q+G I + +M D + + RGF FI +D +++D+++ + +H NG EV++A+
Sbjct: 118 DYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIVIQKYHTGNGLNCEVRKALS 176
Query: 184 KE--FSPGPSRSSMIGYNNFGFNRPTNLLN--SFAQRYNLSPAGGFGVRMDSRFSPLATG 239
K+ S S+ G G N +F+ R + G G S + G
Sbjct: 177 KQEMASASSSQRDFGGGRGGGLGGSDNFGRGGNFSGRGGFGGSRGGGGYAGSGYCYNGFG 236
Query: 240 RGGISPFGGAG-------YGVGMNLDGGLSPSYGGSSNF 271
G S FGG G Y G N+ G S YGG +
Sbjct: 237 NDG-SNFGGGGSYNDFGNYKKGGNVGGRSSGLYGGGGQY 274
Score = 160 (61.4 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + F+Q GT+TD VV D N +R RGFGF+T
Sbjct: 2 SESESPKEPEQLRKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E V H ++ ++VE K A+ +E S P
Sbjct: 62 YATVEEVKGRPH-----VDERVVEPKWAISREDSQRP 93
Score = 72 (30.4 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 35/124 (28%), Positives = 49/124 (39%)
Query: 215 QRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Q+Y+ VR +A+ FGG G G G+ GG S ++G NFS
Sbjct: 159 QKYHTGNGLNCEVRKALSKQEMASASSSQRDFGG-GRGGGL---GG-SDNFGRGGNFSGR 213
Query: 275 LGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAF 334
G+G G GG + GF GN G + ++N +GN S G +
Sbjct: 214 GGFGGSRGG--GGYAGSGYCYNGF--GND-GSNFGGGGSYNDFGNYKKGGNVGGRSSGLY 268
Query: 335 LGSG 338
G G
Sbjct: 269 GGGG 272
Score = 58 (25.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 31/90 (34%), Positives = 33/90 (36%)
Query: 259 GGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWG 318
GG GGS NF GR GGN FS GF G G G S +N +G
Sbjct: 192 GGRGGGLGGSDNF------GR------GGN---FSGRGGFGGSRGGGGYAGSGYCYNGFG 236
Query: 319 N--------GSLNSATNPASPGAFLGSGSG 340
N GS N N G G SG
Sbjct: 237 NDGSNFGGGGSYNDFGNYKKGGNVGGRSSG 266
Score = 52 (23.4 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 301 GNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWG 354
G GRG + S + GN S + G +GSG FGN+ N+G
Sbjct: 191 GGGRGGGLGGSDNFGRGGNFSGRGGFGGSRGGGGY-AGSGYCYNGFGNDGSNFG 243
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 307 (113.1 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 89/286 (31%), Positives = 142/286 (49%)
Query: 5 LGKLFIGGISWDTDEERLK--EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
L KLF+GG+S++ E L +F ++G + + V+MRD T R+RGFGFV +A +
Sbjct: 13 LQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDA 72
Query: 63 VIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
+ + H + GR VE K+A +D Q PG T KKIFVGG+ E
Sbjct: 73 AMNARPHKVGGRAVEPKRAGSKDSQR------------PGAHLTMKKIFVGGVKEDTEEH 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ Y +Q G T+V + R F F+T+D+ +VD+++ + + +NG EV++
Sbjct: 121 RLRDYLEQNGK-TEVTEITTDRGSGKRDFAFVTFDN--SVDKIVIQKYSTVNGHNCEVRK 177
Query: 181 AVPKE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
A+ K+ S S+ G NFG+ N ++F + + G + ++ S F P+
Sbjct: 178 ALSKQEMASASSSQRGRSGSRNFGYKGFGNDRSNFGGGGSYNDFGNYNIQ-SSNFGPMKG 236
Query: 239 GR---GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRML 281
G GG P+ G G + G YGGSS+ S++ G+ L
Sbjct: 237 GNFGGGGSGPYVGGGQDFAKPRNQG---GYGGSSSSSSTHVCGQKL 279
Score = 201 (75.8 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 46/99 (46%), Positives = 63/99 (63%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVT-ES-DFKKYFDQFGTITDVVVMYDHNTQRPRGFGF 151
S SS P + +K+FVGGL+ T ES +F+Q+GT+TD VVM D NT+R RGFGF
Sbjct: 2 SKSESSKEPEQLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGF 61
Query: 152 ITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFS-PG 189
+TY + E VD ++ H++ G+ VE KRA K+ PG
Sbjct: 62 VTYATVEEVDAAMNARPHKVGGRAVEPKRAGSKDSQRPG 100
Score = 55 (24.4 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 297 GFSG-GNGRGDSVLSSTTWNVWGNGSLNSAT-NPASPGAFLGSGSGNF 342
G+ G GN R + ++N +GN ++ S+ P G F G GSG +
Sbjct: 201 GYKGFGNDRSNFG-GGGSYNDFGNYNIQSSNFGPMKGGNFGGGGSGPY 247
Score = 50 (22.7 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 437 GSGSFSY-GLGTVSTNVAAKSSEGFIGSYNVTS 468
GS +F Y G G +N S G+YN+ S
Sbjct: 196 GSRNFGYKGFGNDRSNFGGGGSYNDFGNYNIQS 228
>UNIPROTKB|F1N7Z3 [details] [associations]
symbol:F1N7Z3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00696055 EMBL:DAAA02008074
Ensembl:ENSBTAT00000056782 Uniprot:F1N7Z3
Length = 268
Score = 233 (87.1 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 70/216 (32%), Positives = 104/216 (48%)
Query: 70 IDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGR-TKKIFVGGLASTVTESDFKKYFDQ 128
+DGR V+ K+AV R+D PG KK+FVGG+ E + YF+Q
Sbjct: 58 VDGRVVKPKRAVSREDSQR-----------PGAHLPVKKVFVGGIKEDTEEHHLRDYFEQ 106
Query: 129 FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE--F 186
+G + ++ D + + RGF F+T+D ++VD+++ + +H NG EV++A+ K+
Sbjct: 107 YGKTEVIEIITDQGSGKKRGFVFVTFDDHDSVDKIVIQKYHTGNGLNCEVRKALSKQEMA 166
Query: 187 SPGPSRSSMIGYNNFGFNRPTNLLNS--FAQRYNLSPAGGFGVRMDSRFSPLATGRG-GI 243
S S+ G +FG R L S F + N S GGFG SR G G G
Sbjct: 167 SASSSQRGRSGSEDFGGGRGGGLGGSDNFGRGGNFSGRGGFG---GSRGGGGYAGSGDGY 223
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNFSN-SLGYG 278
+ FG G G GG Y S N++N S +G
Sbjct: 224 NGFGNDGSNFG---GGG---GYNDSGNYNNQSSNFG 253
Score = 220 (82.5 bits), Expect = 8.0e-26, Sum P(2) = 8.0e-26
Identities = 65/214 (30%), Positives = 101/214 (47%)
Query: 78 KKAVPRDDQNMLNRNTSSIHSSPGPGR---TKKIFVGGLASTVTESDFKKYFDQFGTITD 134
+KA D + + + S S PG KK+FVGG+ E + YF+Q+G
Sbjct: 53 RKATQVDGRVVKPKRAVSREDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFEQYGKTEV 112
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE--FSPGPSR 192
+ ++ D + + RGF F+T+D ++VD+++ + +H NG EV++A+ K+ S S+
Sbjct: 113 IEIITDQGSGKKRGFVFVTFDDHDSVDKIVIQKYHTGNGLNCEVRKALSKQEMASASSSQ 172
Query: 193 SSMIGYNNFGFNRPTNLLNS--FAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAG 250
G +FG R L S F + N S GGFG SR G GG + G G
Sbjct: 173 RGRSGSEDFGGGRGGGLGGSDNFGRGGNFSGRGGFG---GSR------GGGGYAG-SGDG 222
Query: 251 YGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPF 284
Y G DG ++GG +++S Y F
Sbjct: 223 YN-GFGNDGS---NFGGGGGYNDSGNYNNQSSNF 252
Score = 159 (61.0 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 35/91 (38%), Positives = 58/91 (63%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
K+F+GGI DT+E L++YF +YG EV+E I+ D+ +G+ RGF FV F D ++++
Sbjct: 85 KVFVGGIKEDTEEHHLRDYFEQYGKTEVIE--IITDQGSGKKRGFVFVTFDDHDSVDKIV 142
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTS 94
+ K H +G E +KA+ + Q M + ++S
Sbjct: 143 IQKYHTGNGLNCEVRKALSK--QEMASASSS 171
Score = 103 (41.3 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+ GL+ T + F+Q+GT+TD VV D N +R G G E
Sbjct: 3 PEQLQKLFIRGLSFETTHEGLRSRFEQWGTLTDCVVRRDPNAKRHGGGG------ERKAT 56
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
+V +G++V+ KRAV +E S P
Sbjct: 57 QV--------DGRVVKPKRAVSREDSQRP 77
Score = 100 (40.3 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFI G+S++T E L+ F ++G + + V+ RD R G G ER
Sbjct: 6 LQKLFIRGLSFETTHEGLRSRFEQWGTLTDCVVRRDPNAKRHGGGG----------ERKA 55
Query: 65 MDKHMIDGRTVEAKKAVPRDD 85
+DGR V+ K+AV R+D
Sbjct: 56 TQ---VDGRVVKPKRAVSRED 73
Score = 83 (34.3 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 29/74 (39%), Positives = 34/74 (45%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYG--RMLGPFPGGNS--NRFST 294
GR G FGG G G G+ GG S ++G NFS G+G R G + G N F
Sbjct: 174 GRSGSEDFGG-GRGGGL---GG-SDNFGRGGNFSGRGGFGGSRGGGGYAGSGDGYNGFGN 228
Query: 295 P-VGFSGGNGRGDS 307
F GG G DS
Sbjct: 229 DGSNFGGGGGYNDS 242
Score = 82 (33.9 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 28/90 (31%), Positives = 36/90 (40%)
Query: 267 GSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSAT 326
GS +F G G + G G FS GF G G G S +N +GN N
Sbjct: 177 GSEDFGGGRG-GGLGGSDNFGRGGNFSGRGGFGGSRGGGGYAGSGDGYNGFGNDGSN--- 232
Query: 327 NPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
F G G N ++ N S N+GP+
Sbjct: 233 -------FGGGGGYNDSGNYNNQSSNFGPI 255
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 306 (112.8 bits), Expect = 3.7e-27, P = 3.7e-27
Identities = 93/287 (32%), Positives = 136/287 (47%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S+ T E L+ +F ++ + + V MRD T R+RGFGFV + + +
Sbjct: 4 LRKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAM 63
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +DG VE K+AV R+D SPG T K+I VGG+ E
Sbjct: 64 NARPHKVDGSFVEPKRAVSREDSQ-----------SPGAHLTVKEISVGGIKEDTEEHHL 112
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+ +G I + +M D + + + F F+T+D ++VD+++ + +H +NG E
Sbjct: 113 RDYFEHYGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDKIVIQKYHTVNGHNCETVALS 171
Query: 183 PKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAG----GFGVRMDSRFSPLA 237
+E S S+ G NFG P S + Y G G G +
Sbjct: 172 KQEMASASSSQRGRSGSGNFGGGGPGYCEGS--RGYGSGGQGDGNQGSGYGGSGSYDRYN 229
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLS-P----SYGGSSNFSNSLGYGR 279
G GG GG G G G NL + P YGGSS+ S+S G R
Sbjct: 230 NGGGG----GGFGAGSGSNLGQFFAKPRKQGGYGGSSS-SSSYGSDR 271
Score = 207 (77.9 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 39/89 (43%), Positives = 58/89 (65%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T + +F+Q+ T+TD V M D NT+R RGFGF+TY + E VD
Sbjct: 1 PEQLRKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVD 60
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
++ H+++G VE KRAV +E S P
Sbjct: 61 AAMNARPHKVDGSFVEPKRAVSREDSQSP 89
Score = 83 (34.3 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 30/84 (35%), Positives = 34/84 (40%)
Query: 239 GRGGISPFGGAG---------YGVGMNLDGGLSPSYGGSSNFS--NSLGYGRMLGPFPGG 287
GR G FGG G YG G DG YGGS ++ N+ G G G G
Sbjct: 184 GRSGSGNFGGGGPGYCEGSRGYGSGGQGDGNQGSGYGGSGSYDRYNNGGGGGGFGAGSGS 243
Query: 288 NSNRFSTPVGFSGGNGRGDSVLSS 311
N +F GG G G S SS
Sbjct: 244 NLGQFFAKPRKQGGYG-GSSSSSS 266
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 306 (112.8 bits), Expect = 3.7e-27, P = 3.7e-27
Identities = 101/327 (30%), Positives = 147/327 (44%)
Query: 38 MRDRATGRARGFGFVVFADPAVAERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSI 96
MRD T R+RGFGFV ++ + + + H R VE K+AV R+D S+
Sbjct: 1 MRDPKTKRSRGFGFVTYSCVEEVDAAMYARPHK---RVVEPKRAVSRED---------SV 48
Query: 97 HSSPGPGRT-KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
PG T KKIFVGG+ E + + F+ +G I + VM D + + RG F+T+D
Sbjct: 49 --KPGAHLTVKKIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFD 106
Query: 156 SEEAVDRVLHKTFHELNGKMVEVKRAVPKEF--SPGPSRSSMIGYNNFGFNRPTNLLN-- 211
+ VD+++ + +H +NG EVK+A+ K+ S G R G NF R N
Sbjct: 107 DHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGG 165
Query: 212 -SFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSN 270
+F + N GG+G G GG + FGG G G N GG S G
Sbjct: 166 GNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGGG-G---NYGGGPGYSSRGGYG 221
Query: 271 FSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGN--GSLNSATNP 328
GYG G + GG + G++ G G + +N +GN G S P
Sbjct: 222 GGGPGGYGNQGGGYGGGGGG-YD---GYNEGGNFGGNYGGGGNYNDFGNYSGQQQSNYGP 277
Query: 329 ASPGAFLGSGSGN-FEVSFGNNSVNWG 354
G+F G SG+ + +G+ + G
Sbjct: 278 MKGGSFGGRSSGSPYGGGYGSGGGSGG 304
Score = 166 (63.5 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GGI DT+E L++ F YG++ +M DR +G+ RG FV F D +++++
Sbjct: 58 KIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQ 117
Query: 67 K-HMIDGRTVEAKKAVPRDD 85
K H I+G E KKA+ + +
Sbjct: 118 KYHTINGHNCEVKKALSKQE 137
Score = 62 (26.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 24/83 (28%), Positives = 35/83 (42%)
Query: 197 GYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMN 256
GY+ G+N N ++ N + G + + S + P+ +GG FGG G
Sbjct: 241 GYD--GYNEGGNFGGNYGGGGNYNDFGNYSGQQQSNYGPM---KGG--SFGGRSSG---- 289
Query: 257 LDGGLSPSYGGSSNFSNSLGYGR 279
SP GG + S GYGR
Sbjct: 290 -----SPYGGGYGSGGGSGGYGR 307
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 276 (102.2 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 64/153 (41%), Positives = 90/153 (58%)
Query: 56 DPAVAERVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLA 114
D A ++V+ +H +D +T++ K A PR Q + RTKKIFVGGL+
Sbjct: 2 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLS 49
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGK 174
T D K+YF+QFG + D ++M+D T R RGFGF+T++SE+ V++V FHE+N K
Sbjct: 50 VNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNK 109
Query: 175 MVEVKRAVPKE-FSPGPS---RSSMIGYNNFGF 203
MVE K+A PKE SP S RS ++ Y F
Sbjct: 110 MVECKKAQPKEVMSPTGSARGRSRVMPYGMDAF 142
Score = 177 (67.4 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 34/79 (43%), Positives = 54/79 (68%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+F+GG+S +T E +K+YF ++G+V +A++M D+ T R RGFGFV F + E+V +
Sbjct: 42 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 101
Query: 66 DKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 102 HFHEINNKMVECKKAQPKE 120
Score = 51 (23.0 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 26/106 (24%), Positives = 39/106 (36%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFS 293
A GR + P+G + G+GM G + +Y S + GY P
Sbjct: 128 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPAIP-------L 180
Query: 294 TPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGS 339
T G +V+ T + W +T P+ G FLG+ S
Sbjct: 181 TAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST-PSRTGGFLGTTS 225
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 303 (111.7 bits), Expect = 8.4e-27, P = 8.4e-27
Identities = 96/304 (31%), Positives = 143/304 (47%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ + S + +M D T +RGF FV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHCSHS----PSCVMTDPNTKCSRGFRFVTYATVEEVDAAM 68
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +D R VE K+ V R+ PG T KKIF GG+ E
Sbjct: 69 NARPHKVDRRVVEPKRGVSREGSQR-----------PGAHLTVKKIFAGGIKEDTEERHL 117
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+ G I + +M D ++ + RGF F+T+D ++VD+ + + +H +NG EV++A+
Sbjct: 118 RDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNREVRKAL 177
Query: 183 PKE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR 240
K+ S S+ G NFG R + + + G G R R+ G
Sbjct: 178 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGN--ENFGHGGNGSGGSRGGGRY-----GG 230
Query: 241 GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSN-SLGYGRMLGPFPGGNSNRFSTPVGFS 299
GG + G G G N GG SY N++N S +G + G GG S S P G
Sbjct: 231 GG-DGYNGFGND-GSNFGGG--GSYSDFGNYNNRSSNFGPVKGENFGGRS---SGPDGGG 283
Query: 300 GGNG 303
GG G
Sbjct: 284 GGYG 287
Score = 147 (56.8 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 93 TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI 152
TS S PG+ +K+F+GGL+ T+ + + + VM D NT+ RGF F+
Sbjct: 1 TSKSWSPKEPGQLRKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFV 56
Query: 153 TYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
TY + E VD ++ H+++ ++VE KR V +E S P
Sbjct: 57 TYATVEEVDAAMNARPHKVDRRVVEPKRGVSREGSQRP 94
Score = 74 (31.1 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 27/76 (35%), Positives = 33/76 (43%)
Query: 282 GPFPGGNSNRFSTPVGFS-GGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSG 340
G F GG F F GGNG G S + G+G N N S F G GS
Sbjct: 196 GNFGGGRGGGFGGNENFGHGGNGSGGS-RGGGRYGGGGDG-YNGFGNDGSN--FGGGGSY 251
Query: 341 NFEVSFGNNSVNWGPV 356
+ ++ N S N+GPV
Sbjct: 252 SDFGNYNNRSSNFGPV 267
Score = 63 (27.2 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 29/104 (27%), Positives = 40/104 (38%)
Query: 247 GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGD 306
G +G G N GG +GG+ NF + GGN + S G GG G G
Sbjct: 191 GRSGSG---NFGGGRGGGFGGNENFGH------------GGNGSGGSRGGGRYGGGGDGY 235
Query: 307 SVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNS 350
+ + N G GS + N + + G G +FG S
Sbjct: 236 NGFGNDGSNFGGGGSYSDFGNYNNRSSNFGPVKGE---NFGGRS 276
Score = 54 (24.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 30/91 (32%), Positives = 38/91 (41%)
Query: 189 GPSRSS-MIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG 247
G SR G G+N N ++F + S G + R S F P+ +G FG
Sbjct: 220 GGSRGGGRYGGGGDGYNGFGNDGSNFGGGGSYSDFGNYNNR-SSNFGPV---KG--ENFG 273
Query: 248 GAGYGVGMNLDGGLSPSYGGSSNFSNSLGYG 278
G G DGG YGG FS+S YG
Sbjct: 274 GRSSGP----DGG-GGGYGG---FSSSSNYG 296
Score = 41 (19.5 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 437 GSGSFSY-GLGTVSTNVAAKSSEGFIGSYNVTSRQSTRG 474
G G Y G G +N S G+YN +R S G
Sbjct: 229 GGGGDGYNGFGNDGSNFGGGGSYSDFGNYN--NRSSNFG 265
Score = 38 (18.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 17/55 (30%), Positives = 20/55 (36%)
Query: 186 FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGR 240
F G S S YNN N +F R + GG G S S +GR
Sbjct: 245 FGGGGSYSDFGNYNNRSSNFGPVKGENFGGRSSGPDGGGGGYGGFSSSSNYGSGR 299
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 268 (99.4 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 66/201 (32%), Positives = 109/201 (54%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L +LFI G++++T E L+ +F ++G +++ V+M D T +R FGFV++A + +
Sbjct: 13 LWRLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAV 72
Query: 65 -MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H ++ R + K AV R+D PG T KK FVGG+ E
Sbjct: 73 NVRPHKVN-RIGKPKMAVSREDSQR-----------PGAHLTGKKTFVGGIKEDTEEHHL 120
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+G I + +M D + + RGF F+T D +++D+++ + H +NG EV+RA+
Sbjct: 121 RHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHNYEVRRAL 180
Query: 183 PKE--FSPGPSRSSMIGYNNF 201
K+ S SR S G NF
Sbjct: 181 SKQEMASASTSRRSK-GSGNF 200
Score = 140 (54.3 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + ++F+ GL T + +F Q+G + D VVM D NT+ R FGF+ Y + E VD
Sbjct: 10 PKQLWRLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVD 69
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNF 201
++ H++N ++ + K AV +E S P + + G F
Sbjct: 70 AAVNVRPHKVN-RIGKPKMAVSREDSQRPG-AHLTGKKTF 107
Score = 51 (23.0 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 310 SSTTWNVWGNGSLNSATNPASPGAFLG-SGSGNFEVSFGNNSVNWG 354
+ST+ G+G+ + G F G GSGN + F N+ N+G
Sbjct: 188 ASTSRRSKGSGNFDGGCG----GNFSGYGGSGNGYIGFSNDGSNFG 229
Score = 44 (20.5 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 241 GGISPFGGAGYG-VGMNLDG 259
G S +GG+G G +G + DG
Sbjct: 206 GNFSGYGGSGNGYIGFSNDG 225
Score = 40 (19.1 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 252 GVGMNLDGGLSPS---YGGSSN----FSN 273
G G N DGG + YGGS N FSN
Sbjct: 196 GSG-NFDGGCGGNFSGYGGSGNGYIGFSN 223
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 297 (109.6 bits), Expect = 4.2e-26, P = 4.2e-26
Identities = 101/340 (29%), Positives = 155/340 (45%)
Query: 28 RYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-MDKHMIDGRTVEAKKAVPRDDQ 86
++G + + V+MRD T +RGF F+ +A + + + H +D R VE KKAV R+D
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS 61
Query: 87 NMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR 145
PG T KKIFVGG+ + + YF+ +G I + +M D +
Sbjct: 62 QR-----------PGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGN 110
Query: 146 PRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYN---NFG 202
R F F+T+D+ ++VD+++ + +H +NG EV++A+ K+ S SS G + NFG
Sbjct: 111 KRSFAFVTFDAHDSVDKIVIQKYHTVNGHNCEVRKALLKQEMASAS-SSQRGQSCSGNFG 169
Query: 203 FNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGA--GYGVGMNLD 258
+F NLS G G + F RGG + G GYG G
Sbjct: 170 GGCGGGFGGNENFGCGGNLSGQSGSGDGCNG-FGNDGGYRGGGPGYSGGSRGYGSGGQGY 228
Query: 259 GGLSPSYGGSSNFSN------SLGYGRMLGP-FPGGNS-NRFSTPVGFSGGNG--RGDSV 308
G YGGS ++ + GYG G F GG S N F S G +G +
Sbjct: 229 GNQGSGYGGSGSYDSYNNGGGGGGYGGASGSNFGGGRSYNNFGNYNNQSSNFGAMKGGNF 288
Query: 309 LSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGN 348
++ + G G + P + G + GS S + S+G+
Sbjct: 289 GGRSSGSYGGGGQYFA--KPQNQGGY-GSSSSSSSSSYGS 325
Score = 162 (62.1 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVF-ADPAVAERVIM 65
K+F+GGI DT++ L++YF YG++ IM DR +G R F FV F A +V + VI
Sbjct: 72 KIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHDSVDKIVIQ 131
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTS 94
H ++G E +KA+ + Q M + ++S
Sbjct: 132 KYHTVNGHNCEVRKALLK--QEMASASSS 158
Score = 103 (41.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 39/117 (33%), Positives = 51/117 (43%)
Query: 239 GRGGISPFGG-AGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG 297
G GG FGG +G G NL G S S G + F N GY R GP G S + + G
Sbjct: 171 GCGG--GFGGNENFGCGGNLSGQ-SGSGDGCNGFGNDGGY-RGGGPGYSGGSRGYGS--G 224
Query: 298 FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWG 354
G +G S +++ + NG AS F G S N ++ N S N+G
Sbjct: 225 GQGYGNQGSGYGGSGSYDSYNNGGGGGGYGGASGSNFGGGRSYNNFGNYNNQSSNFG 281
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 297 (109.6 bits), Expect = 4.2e-26, P = 4.2e-26
Identities = 94/288 (32%), Positives = 138/288 (47%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
+L KLFI G+S++T +E L +F G+ V+MR T +RGFGFV P
Sbjct: 8 ELRKLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVT--KPWWRSLA 64
Query: 64 IMDK--HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESD 121
M+ H +D R VE K+ V R D + + + KKIFVGG+ E
Sbjct: 65 AMNARPHKVDERVVEPKRDVSRGDSQRPHAHLT----------VKKIFVGGIQEGTEEHH 114
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ F+Q+G I D+ +M D + + RGF F T+D ++VD+++ + +H +NG EV+ A
Sbjct: 115 LRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREA 173
Query: 182 VPKEFSPGPSRS------SMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSP 235
+ K+ S S S GYN FG + S Q Y +G G ++
Sbjct: 174 LSKQEMASASSSGGGYGGSGDGYNGFG--KKHRGYGSGGQGYGNQGSGYGGSGSYDSYNN 231
Query: 236 LATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSN-SLGYGRMLG 282
+G GG FGG G G N GG SY N+++ S +G M G
Sbjct: 232 CGSG-GG---FGG---GSGSNFGGG--GSYNDFGNYNDQSSNFGPMKG 270
Score = 107 (42.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 28/93 (30%), Positives = 48/93 (51%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
SS P +K+F+ GL+ + +F+ G +VVM NT+ RGFGF+T
Sbjct: 2 SSKSPEELRKLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVTKPWW 60
Query: 158 EAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
++ ++ H+++ ++VE KR V + S P
Sbjct: 61 RSL-AAMNARPHKVDERVVEPKRDVSRGDSQRP 92
Score = 68 (29.0 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 265 YGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNS 324
YGGS + N G+G+ + G + G+ GG+G DS + + +G GS
Sbjct: 189 YGGSGDGYN--GFGKKHRGYGSGGQGYGNQGSGY-GGSGSYDSYNNCGSGGGFGGGS--- 242
Query: 325 ATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N F G GS N ++ + S N+GP+
Sbjct: 243 GSN------FGGGGSYNDFGNYNDQSSNFGPM 268
Score = 67 (28.6 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 239 GRG-GISPFGGA--GYGVGMNLDGGLSPSYGGSSNFS--NSLGYGRMLGPFPGGNSNRF 292
G G G + FG GYG G G YGGS ++ N+ G G G F GG+ + F
Sbjct: 191 GSGDGYNGFGKKHRGYGSGGQGYGNQGSGYGGSGSYDSYNNCGSG---GGFGGGSGSNF 246
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 296 (109.3 bits), Expect = 5.5e-26, P = 5.5e-26
Identities = 86/257 (33%), Positives = 127/257 (49%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLF GG++++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A P E V
Sbjct: 20 LRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA-PV--EEVD 76
Query: 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFK 123
H + +AV R+D +PG T KKIFVGG+ E +
Sbjct: 77 RKDHTRWMEELWNLRAVSREDSQ-----------TPGAHLTVKKIFVGGIKEDTEEHHLR 125
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
Y +Q+G I V +M D + + GF F+T+D ++VD+++ + +H +NG EV++A+
Sbjct: 126 DYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 185
Query: 184 KEFSPGPS-----RSSMIGYNNFGFNRPTNLLNSFAQRYNLSP--AGGFGVRMDSRFSPL 236
K+ S RS YN+FG N N Q N P G FG R P
Sbjct: 186 KQEMASASFSQRGRSGSRNYNDFG-----NYNN---QSSNFGPMKGGNFGGRSSG---PY 234
Query: 237 ATGRGGIS-PFGGAGYG 252
G + P GYG
Sbjct: 235 GGGDQYFAKPQNQGGYG 251
Score = 176 (67.0 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 41/97 (42%), Positives = 55/97 (56%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F GGL T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 9 SKSESLKEPEQLRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 68
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y E VDR H + E + RAV +E S P
Sbjct: 69 YAPVEEVDRKDHTRWMEELWNL----RAVSREDSQTP 101
Score = 59 (25.8 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 27/74 (36%), Positives = 34/74 (45%)
Query: 212 SFAQR-----YNLSPAGGFGVRMDSRFSPLATGR-GGIS--PFGGAG-YGVGMNLDGGLS 262
SF+QR N + G + S F P+ G GG S P+GG Y GG
Sbjct: 193 SFSQRGRSGSRNYNDFGNYN-NQSSNFGPMKGGNFGGRSSGPYGGGDQYFAKPQNQGG-- 249
Query: 263 PSYGGSSNFSNSLG 276
YGGSS+ S+S G
Sbjct: 250 --YGGSSS-SSSYG 260
Score = 56 (24.8 bits), Expect = 8.8e-14, Sum P(2) = 8.8e-14
Identities = 25/73 (34%), Positives = 29/73 (39%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGF 298
GR G + +G N P GG NF GR GP+ GG F+ P
Sbjct: 198 GRSGSRNYND--FGNYNNQSSNFGPMKGG--NFG-----GRSSGPY-GGGDQYFAKPQN- 246
Query: 299 SGGNGRGDSVLSS 311
GG G G S SS
Sbjct: 247 QGGYG-GSSSSSS 258
Score = 40 (19.1 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 337 SGSGNFEV--SFGNNSVNWGPV 356
SGS N+ ++ N S N+GP+
Sbjct: 200 SGSRNYNDFGNYNNQSSNFGPM 221
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 296 (109.3 bits), Expect = 5.5e-26, P = 5.5e-26
Identities = 96/301 (31%), Positives = 143/301 (47%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S+ T EE L+ +F ++ ++ V+MRD T R+RG GF + + +
Sbjct: 14 LRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAM 73
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIF-VGGLASTVTESDF 122
+ H +DGR V R+D PG T KIF V G+ E
Sbjct: 74 NARPHKVDGRVVS------REDSQR-----------PGAHLTVKIFIVSGIKEDTEEHHL 116
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+Q+ I + +M D +++ R F F+T+D ++VD++ + +H +NG EV++A+
Sbjct: 117 RDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNGHNCEVRKAL 176
Query: 183 PKE--FSPGPSRSSMIGYNNF-----GFNRPTNLLNSFAQRY-NLSPAGGFGVRMDSRFS 234
K+ S S+ G + G++ + + S Q Y N S GG G DS +
Sbjct: 177 SKQEMASASSSQRGESGSGKYEGVGPGYSGGSRVCGSGGQDYGNGSGYGGSG-SYDSYNN 235
Query: 235 PLATGRGGISPFGGAGYGVGMNL-DGGLSPSYGG----SSNFSNSLGY---GRMLGPFPG 286
RG FGG G G N DGG +G SSNF G GR GP+ G
Sbjct: 236 --GGDRGS---FGG---GSGSNFGDGGSYNDFGNYNNQSSNFRPMKGANFGGRSSGPYGG 287
Query: 287 G 287
G
Sbjct: 288 G 288
Score = 161 (61.7 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ TE + +F+Q+ T+ VVM D NT+R RG GF T
Sbjct: 3 SKSESLKEPEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDT 62
Query: 154 YDSEEAVDRVLHKTFHELNGKMV 176
Y + E +D ++ H+++G++V
Sbjct: 63 YTTVEEMDAAMNARPHKVDGRVV 85
Score = 78 (32.5 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 35/134 (26%), Positives = 52/134 (38%)
Query: 213 FAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAG-Y-GVGMNLDGGLSPSYGGSSN 270
F Q+Y+ VR +A+ G+G Y GVG GG G +
Sbjct: 158 FIQKYHTVNGHNCEVRKALSKQEMASASSSQRGESGSGKYEGVGPGYSGGSRVCGSGGQD 217
Query: 271 FSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATN--P 328
+ N GYG G + N+ G G+ GD ++N +GN + N ++N P
Sbjct: 218 YGNGSGYGGS-GSYDSYNNGGDRGSFGGGSGSNFGDG----GSYNDFGNYN-NQSSNFRP 271
Query: 329 ASPGAFLGSGSGNF 342
F G SG +
Sbjct: 272 MKGANFGGRSSGPY 285
Score = 64 (27.6 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 25/90 (27%), Positives = 37/90 (41%)
Query: 268 SSNFSNSLGYGRMLGPFPG-GNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSAT 326
SS+ G G+ G PG +R G GNG G S +++ + NG +
Sbjct: 185 SSSQRGESGSGKYEGVGPGYSGGSRVCGSGGQDYGNGSGYG--GSGSYDSYNNGGDRGSF 242
Query: 327 NPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
S F GS N ++ N S N+ P+
Sbjct: 243 GGGSGSNFGDGGSYNDFGNYNNQSSNFRPM 272
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 293 (108.2 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 64/180 (35%), Positives = 99/180 (55%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM-D 66
+ IG + T E L+ +F +G + + V++ + T R+R FGFV +++ A+ +
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGGLASTVTESDFKKY 125
H +DG TVE K+AV R+D + PG + KK+FVGGL V E D ++
Sbjct: 69 PHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDVAEGDLIEH 117
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F QFG + ++ D + + RGFGF+ + S +A D+ FH + G VEVK+AVPKE
Sbjct: 118 FSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
Score = 179 (68.1 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLF+GG+ D E L E+FS++G V +A I+ D+ +G+ RGFGFV F A++ +
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVV 158
Query: 67 K-HMIDGRTVEAKKAVPRDD 85
K H I G VE KKAVP++D
Sbjct: 159 KFHPIQGHRVEVKKAVPKED 178
Score = 161 (61.7 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKT 167
+ +G +ES + +F+ FGT+TD VV+ + T+R R FGF+TY + E D + +
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 168 FHELNGKMVEVKRAVPKEFSPGPSRSSMI 196
H ++G VE+KRAV +E S P + +
Sbjct: 69 PHAVDGNTVELKRAVSREDSARPGAHAKV 97
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 289 (106.8 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 63/135 (46%), Positives = 87/135 (64%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
M S K+FIGG+SW T + L++YFS++GE+ E ++MRD T R+RGFGFV FADPA
Sbjct: 12 MFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 71
Query: 61 ERVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGL-ASTVT 118
++V+ H +D +T++ K A PR Q + RTKKIFVGGL A+TV
Sbjct: 72 DKVLGQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVV 119
Query: 119 ESDFKKYFDQFGTIT 133
E D K+YF+QFG ++
Sbjct: 120 E-DVKQYFEQFGKVS 133
Score = 186 (70.5 bits), Expect = 8.9e-14, P = 8.9e-14
Identities = 39/126 (30%), Positives = 67/126 (53%)
Query: 105 TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
+ K+F+GGL+ + + YF +FG I + +VM D T+R RGFGF+T+ +VD+VL
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 165 HKTFHELNGKMVEVKRAVPKEFSPGP-SRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAG 223
+ HEL+ K ++ K A P+ P +R+ I N + + +++ AG
Sbjct: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVSAG 135
Query: 224 GFGVRM 229
G+ +
Sbjct: 136 SPGLSL 141
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 289 (106.8 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 70/201 (34%), Positives = 106/201 (52%)
Query: 56 DPAVAERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGG 112
DP V+ + H +DGR ++ K PR Q R P +K KIFVGG
Sbjct: 3 DPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGG 62
Query: 113 LASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELN 172
+ E++ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++
Sbjct: 63 IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIM 122
Query: 173 GKMVEVKRAVPKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDS 231
GK VEVKRA P++ S P + G + +G N N +A + + G+G +
Sbjct: 123 GKKVEVKRAEPRDSKSQAPGQP---GASQWGSRVVPNAANGWAGQPPPTWQQGYGPQ--G 177
Query: 232 RFSPLATGRGGISPFGGAGYG 252
+ P GG P AG G
Sbjct: 178 MWVPAGQAIGGYGP-PPAGRG 197
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 53 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 112
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQN 87
V M H I G+ VE K+A PRD ++
Sbjct: 113 AVNMHFHDIMGKKVEVKRAEPRDSKS 138
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 289 (106.8 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 91/272 (33%), Positives = 135/272 (49%)
Query: 2 ESD-LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
ES+ L KLFIG +S++T ++ L+E+ ++ + + V+MRD R+ GFGFV ++
Sbjct: 19 ESEHLTKLFIGYLSFETTDDSLREHSEKW-TLTDCVVMRDPLFERSSGFGFVTYSCVEEV 77
Query: 61 ERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVT 118
+ + + H +DGR V +AV R+D S+ PG T KKIFVGG+
Sbjct: 78 DAAMCARPHKVDGRVV-GPRAVSRED---------SV--KPGTHLTVKKIFVGGVREDRE 125
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E + K YF+++G I + VM D + + RGF F+T+D + VD++ + +H +NG E+
Sbjct: 126 EYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCEM 185
Query: 179 KRAVPKEF--SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPL 236
K+ + K+ S G R G N R N GG FS
Sbjct: 186 KKVLSKQGMQSAGSQRGRGGGSGNL-MGRGGNF-----------EGGGGNSGHGGNFS-- 231
Query: 237 ATGRGGISPFGGAGYG-VGMNLDGGLSPSYGG 267
GRGG S GG G G +G GG YGG
Sbjct: 232 --GRGGYSSRGGYGSGGLGYVNQGG---GYGG 258
>UNIPROTKB|L7N0C2 [details] [associations]
symbol:L7N0C2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03014397
Ensembl:ENSCAFT00000016130 Uniprot:L7N0C2
Length = 278
Score = 288 (106.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 82/240 (34%), Positives = 115/240 (47%)
Query: 68 HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKKYF 126
H +DGR VE K+AV R+D PG T KKIFVGG+ E + YF
Sbjct: 41 HKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHLRDYF 89
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE- 185
+Q+G I + +M + + RGF F+T+D ++VD+++ + +H +NG EV++A+ K+
Sbjct: 90 EQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 149
Query: 186 -FSPGPSRSSMIGYNNFGFNRPTNL--LNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGG 242
S S+ G NFG R ++F + N S GGFG SR G GG
Sbjct: 150 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFG---GSR------GGGG 200
Query: 243 ISPFGGAGYGV-GMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPVGFSG 300
+GG+G G G DG G ++F N GP GGN R S P G G
Sbjct: 201 ---YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGG 257
Score = 175 (66.7 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 33/89 (37%), Positives = 56/89 (62%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GGI DT+E L++YF +YG++ IM R +G+ RGF FV F D +++++
Sbjct: 70 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDKIVIQ 129
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTS 94
K H ++G E +KA+ + Q M + ++S
Sbjct: 130 KYHTVNGHNCEVRKALSK--QEMASASSS 156
Score = 89 (36.4 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 39/122 (31%), Positives = 49/122 (40%)
Query: 223 GGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GGFG + +GRGG FGG+ G G GG Y G N ++ G G
Sbjct: 172 GGFGGNDNFGRGGNFSGRGG---FGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYN 225
Query: 283 PFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGN 341
F GN N S+ G GGN G S +G G A P + G + G G
Sbjct: 226 DF--GNYNNQSSNFGPMKGGNFGGRSS------GPYGGGGQYFA-KPRNQGGYGGEEGGG 276
Query: 342 FE 343
+E
Sbjct: 277 WE 278
Score = 81 (33.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 36/105 (34%), Positives = 44/105 (41%)
Query: 252 GVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSS 311
G G N GG +GG+ NF GR GGN FS GF G G G S
Sbjct: 162 GSG-NFGGGRGGGFGGNDNF------GR------GGN---FSGRGGFGGSRGGGGYGGSG 205
Query: 312 TTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
+N +GN N F G GS N ++ N S N+GP+
Sbjct: 206 DGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSNFGPM 240
Score = 41 (19.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 203 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 231
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 288 (106.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 91/287 (31%), Positives = 133/287 (46%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T ++ L+E+F ++G + D R+RGFGF+ ++ + +
Sbjct: 1 LRKLFIGGLSFETTDDSLREHFEKWGTLT------DCGNKRSRGFGFLTYSCVEEVDAAV 54
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTESDF 122
+ H R V K+AV R+D S+ PG KK++VGG+ E +
Sbjct: 55 CARPHKAAVRVV-GKRAVSRED---------SV--KPGAHLMVKKLYVGGIKEDTEEYNL 102
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF ++G I + VM + + RGF F+T+D + VD++L K H +NG EV + +
Sbjct: 103 RGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQK-HHAINGNNCEVGKVL 161
Query: 183 PKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMD-SRFSPLATGR 240
KE S G R NF R N F R N GG+G SR S G
Sbjct: 162 SKEMQSAGSQRGRGGASGNF-MGRGGN----FGGR-NFGGRGGYGGGGGGSRGS--YGGN 213
Query: 241 GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGG 287
GG + FGG G P Y + GYG G + GG
Sbjct: 214 GGDNGFGGDAGSYGSR------PGYSSRRGYGGGPGYGNQGGGYGGG 254
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 286 (105.7 bits), Expect = 7.9e-25, P = 7.9e-25
Identities = 70/200 (35%), Positives = 110/200 (55%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L +LFIGG+S++T E+ L+E F G + + V+MRD + FGFV ++ + +
Sbjct: 6 LRRLFIGGLSFETIEDSLREGFEM-GTLADCVVMRD-----PQSFGFVTYSCVEEVDAAM 59
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123
+ H +DGR VE K+AV R+D S+ PG T KIFVGG+ E + +
Sbjct: 60 CARPHKVDGRVVEPKRAVSRED---------SV--KPGAHLTVKIFVGGIKEDAEEYNLR 108
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVP 183
YF+++G I + VM D + + RGF F+T+D + VD+++ +H +NG EV++A+
Sbjct: 109 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV-VNYHTINGHNCEVRKALS 167
Query: 184 KEF--SPGPSRSSMIGYNNF 201
K+ S G G NF
Sbjct: 168 KQEMQSAGSQSGHGGGSGNF 187
Score = 154 (59.3 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +++F+GGL+ E ++ F+ GT+ D VVM D P+ FGF+TY E VD
Sbjct: 3 PEQLRRLFIGGLSFETIEDSLREGFEM-GTLADCVVMRD-----PQSFGFVTYSCVEEVD 56
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
+ H+++G++VE KRAV +E S P
Sbjct: 57 AAMCARPHKVDGRVVEPKRAVSREDSVKP 85
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 306 (112.8 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 63/178 (35%), Positives = 110/178 (61%)
Query: 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMR--DRATGRARGFGFVVFADPAVAERV 63
GK+F+GG+ + E LK+YFS +GEV E+++++ ++A+ ++RGFGFV F DP+V + V
Sbjct: 106 GKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKAS-KSRGFGFVTFVDPSVIDEV 164
Query: 64 IMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123
I+ H I+G+ VE ++A+P+++ P + +K+FVGGL +T DF
Sbjct: 165 ILINHSIEGKNVEIRRAIPKEEMT----------EEP---KKQKLFVGGLPKHITSDDFN 211
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
YF +FG I++ ++ + N +GFGFI + E + +L++ H + GK V+++ A
Sbjct: 212 NYFSEFGEISEYNLLTEKNGTI-KGFGFICFKDESVNEIILNEQQHIILGKRVDIRIA 268
Score = 164 (62.8 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/106 (33%), Positives = 54/106 (50%)
Query: 85 DQNMLNRNTSSIHSSPGPGRTK----KIFVGGLASTVTESDFKKYFDQFGTITD-VVVMY 139
D+N + N ++ K KIFVGGL T + K YF FG + + +V+
Sbjct: 81 DKNHIENNNNNDEEGSNLSLPKSISGKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKA 140
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
+ RGFGF+T+ +D V+ H + GK VE++RA+PKE
Sbjct: 141 TEKASKSRGFGFVTFVDPSVIDEVILIN-HSIEGKNVEIRRAIPKE 185
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 257 (95.5 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 59/162 (36%), Positives = 94/162 (58%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD-PAVAERV 63
L KLFIGG+S++ ++ L+E+F ++G + + V+MRD T R+R F FV ++ V +
Sbjct: 12 LRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAM 71
Query: 64 IMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
H +DGR VE K+AV R+D S+ PG T KKIFVGG+ E +
Sbjct: 72 CAQPHNVDGRVVEPKRAVSRED---------SV--KPGAHLTVKKIFVGGIKEDTEEYNL 120
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
+ YF+++G I + VM D + + R F+T+D + VD+++
Sbjct: 121 RDYFEKYGKIKTMEVMEDRLSGKERLL-FVTFDDHDTVDKIV 161
Score = 196 (74.1 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 37/94 (39%), Positives = 59/94 (62%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D T+R R F F+TY
Sbjct: 4 HDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSC 63
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
+ VD + H ++G++VE KRAV +E S P
Sbjct: 64 VKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKP 97
Score = 48 (22.0 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGG 267
GRGG GG GYG N GG YGG
Sbjct: 172 GRGGNFGRGGNGYG---NQGGG----YGG 193
Score = 37 (18.1 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 336 GSGSGNFEVSFGN 348
G GSGNF GN
Sbjct: 164 GGGSGNFMGRGGN 176
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 188 (71.2 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 56/195 (28%), Positives = 83/195 (42%)
Query: 95 SIHSSPGPGR-TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S+ P R KK+FVGGL S +E D + +F+QFG + D+ +D T+ R F FI
Sbjct: 98 SVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIV 157
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVP--KEFSPGPSRSSMIG----YNNFGFNRPT 207
++ EE+ D+ +T + +VK+AVP K F PG ++ M G Y G N +
Sbjct: 158 FEEEESADKASSQTKQTFGTRECDVKKAVPQGKRF-PG-AQGRMPGGRGMYGGRGGNNNS 215
Query: 208 NLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGG 267
+ Q P G G + G+ G + +G G G G
Sbjct: 216 GWYAGWGQ-IGAMPYGATGAAWGDWYGNGYYGQQGAAHHNNSGSSQGYG--SGYQSFAGN 272
Query: 268 SSNFSNSLGYGRMLG 282
+S F G G
Sbjct: 273 NSGFDYQQAQGARQG 287
Score = 156 (60.0 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 37/104 (35%), Positives = 49/104 (47%)
Query: 87 NMLNRNTSSI-----HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH 141
N +N N S HS+ G KKIFVGG++ V D +F Q+G + V YD
Sbjct: 6 NKINGNASETIKENGHSTKG-NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDR 64
Query: 142 NTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
R RGF F+ + + E L + GK VEVK A +E
Sbjct: 65 TNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE 108
Score = 152 (58.6 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GGIS + + E L +F++YGEV +A + DR GR+RGF FV F + +
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 67 KHM-IDGRTVEAKKAVPRDDQNM 88
+ I G++VE K A R+++ +
Sbjct: 90 REQTIKGKSVEVKPAKSRENKKV 112
Score = 114 (45.2 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GG+ D E+ L+ +F ++G+V + D+ T R F F+VF + A++
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Query: 67 -KHMIDGRTVEAKKAVPR 83
K R + KKAVP+
Sbjct: 171 TKQTFGTRECDVKKAVPQ 188
Score = 60 (26.2 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 26/88 (29%), Positives = 34/88 (38%)
Query: 223 GGFGVRMDSRFSPLATGRG--GISPFGGAGYGVGMNLDGGLSPSYGGS--SNFSNSLGYG 278
G +G R + S G G G P+G G G G G + +N +S GYG
Sbjct: 204 GMYGGRGGNNNSGWYAGWGQIGAMPYGATGAAWGDWYGNGYYGQQGAAHHNNSGSSQGYG 263
Query: 279 RMLGPFPGGNSN-RFSTPVGF-SGGNGR 304
F G NS + G G NG+
Sbjct: 264 SGYQSFAGNNSGFDYQQAQGARQGNNGQ 291
>UNIPROTKB|L7N066 [details] [associations]
symbol:L7N066 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03013421
Ensembl:ENSCAFT00000006911 Uniprot:L7N066
Length = 309
Score = 214 (80.4 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 70/212 (33%), Positives = 97/212 (45%)
Query: 99 SPGPGRTK--KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
SPG R IFVGG+ E + +Q+G + + + D RGF F+T+D
Sbjct: 86 SPGDSRRPGAHIFVGGIKGDPEEHHPRDCLEQYGNVEVMETVTDRGRGEERGFAFVTFDD 145
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPK-EFSPGPSRSSMIGYNNFGFNRPTNL--LNSF 213
++VD+++ + H + G EV++A+ K E + PS G N G R + +SF
Sbjct: 146 HDSVDKIVIQKCHPVKGHSCEVRKALWKQEMARAPSSQRGEGSGNLGGGRGAGVGGNDSF 205
Query: 214 AQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGV-GMNLDG---GLSPSYGGSS 269
+ NLS GGFG SR G GG +GG+G G G DG G SY
Sbjct: 206 GRGGNLSGRGGFG---GSR------GGGG---YGGSGDGPHGFGNDGSHFGGGRSYNDFG 253
Query: 270 NFSNSLGYGRMLGPFPGGN-SNRFSTPVGFSG 300
N++N GP GGN R S P G G
Sbjct: 254 NYNNQ---SSNFGPMKGGNFGGRSSGPYGGGG 282
Score = 131 (51.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 33/107 (30%), Positives = 52/107 (48%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
+F+GGI D +E ++ +YG V + DR G RGF FV F D +++++ K
Sbjct: 97 IFVGGIKGDPEEHHPRDCLEQYGNVEVMETVTDRGRGEERGFAFVTFDDHDSVDKIVIQK 156
Query: 68 -HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGG 112
H + G + E +KA+ + Q M +S G G + VGG
Sbjct: 157 CHPVKGHSCEVRKALWK--QEMARAPSSQRGEGSGNLGGGRGAGVGG 201
Score = 114 (45.2 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFG 50
E L KLFIGG+S +T +E L+ + ++G + + V MRD R+RGFG
Sbjct: 9 EPQLRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFG 57
Score = 109 (43.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
+S SP + +K+F+GGL+ T+ + + +Q+G + D V M D +R RGFG
Sbjct: 1 TSKSESPKEPQLRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFGVGP 60
Query: 154 YDSEEA 159
EEA
Sbjct: 61 GPLEEA 66
Score = 59 (25.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 28/86 (32%), Positives = 38/86 (44%)
Query: 272 SNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASP 331
S +LG GR G GGN + F SG G G S +G GS + +
Sbjct: 188 SGNLGGGRGAGV--GGNDS-FGRGGNLSGRGGFG----GSRGGGGYG-GSGDGPHGFGND 239
Query: 332 GAFLGSG-SGNFEVSFGNNSVNWGPV 356
G+ G G S N ++ N S N+GP+
Sbjct: 240 GSHFGGGRSYNDFGNYNNQSSNFGPM 265
Score = 40 (19.1 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG +G G ++ S G+YN
Sbjct: 228 GSGDGPHGFGNDGSHFGGGRSYNDFGNYN 256
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 169 (64.5 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 57/186 (30%), Positives = 81/186 (43%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
KK+FVGGL+ E K+Y FG I ++ + D T RGF FITY E+ V ++L
Sbjct: 94 KKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLE 153
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGF 225
+H++ E+K A PKE + G + R + Q G
Sbjct: 154 NRYHQIGSGKCEIKVAEPKEIYRQQQQQQKGGRSAAAGERGGS--RGHGQ--------GQ 203
Query: 226 GVRMDSRFSPLAT-GRGGISPFGGAGYGVGMNL-DGGLSPSYGGSS-NFSNSLGYGRMLG 282
G + RF+ G G + + YG N D G SYG + N+ N GYG+
Sbjct: 204 GQNWNQRFNHCYDQGNGNYN----SAYGGDQNYSDYG---SYGYTEFNYGN-YGYGQGYA 255
Query: 283 PFPGGN 288
+ GGN
Sbjct: 256 DYRGGN 261
Score = 167 (63.8 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 33/80 (41%), Positives = 53/80 (66%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FI G+SWDT ++ L +GEVV+ +I D TGR+RGFGFV+F + A +
Sbjct: 12 QQDDGKMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVLFKEAASVD 66
Query: 62 RVI-MDKHMIDGRTVEAKKA 80
+V+ + +H +D ++ K+A
Sbjct: 67 KVLELKEHKLDSMLIDPKRA 86
Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+GG+S DT EE++KEY +GE+ + D T RGF F+ + D ++++ +
Sbjct: 95 KVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLEN 154
Query: 67 K-HMIDGRTVEAKKAVPRD 84
+ H I E K A P++
Sbjct: 155 RYHQIGSGKCEIKVAEPKE 173
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I+++ K+F+ GL+ ++ D FG + D ++ D T R RGFGF+
Sbjct: 4 SKINANKNQQDDGKMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVL 58
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +VD+VL H+L+ +++ KRA
Sbjct: 59 FKEAASVDKVLELKEHKLDSMLIDPKRA 86
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 186 (70.5 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM 65
GK+F+G +SW ++ LK YF+++GEV++ I D TGR+RGFGFV+ D A E+++
Sbjct: 72 GKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILD 131
Query: 66 DK-HMIDGRTVEAKKA-VPRDD 85
K H ++G ++ +KA V ++D
Sbjct: 132 QKEHRLNGDVIDPEKAKVMKND 153
Score = 162 (62.1 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166
K+FVG L+ + + D K YF +FG + D + D NT R RGFGF+ +V+++L +
Sbjct: 73 KMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQ 132
Query: 167 TFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYN 199
H LNG +++ ++A K P + +G N
Sbjct: 133 KEHRLNGDVIDPEKA--KVMKNDPVKKIFVGLN 163
Score = 145 (56.1 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDRVL 164
KKIFVG L TE + + F +FG I + + D + + RGF FIT+ + EE V +VL
Sbjct: 156 KKIFVG-LNPEATEKN--RDFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVL 212
Query: 165 HKTFHELNGKMVEVKRAVPKE 185
K FH ++G+ E+K A PKE
Sbjct: 213 EKKFHTISGRKCEIKVAQPKE 233
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 278 (102.9 bits), Expect = 6.4e-24, P = 6.4e-24
Identities = 83/253 (32%), Positives = 121/253 (47%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
+L KLFI G+S++T +E L +F G+ V+MR T +RGFGFV P
Sbjct: 24 ELRKLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVT--KPWWRSLA 80
Query: 64 IMDK--HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESD 121
M+ H +D R VE K+ V R D + + + KKIFVGG+ E
Sbjct: 81 AMNARPHKVDERVVEPKRDVSRGDSQRPHAHLT----------VKKIFVGGIQEGTEEHH 130
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ F+Q+G I D+ +M D + + RGF F T+D ++VD+++ + +H +NG EV+ A
Sbjct: 131 LRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREA 189
Query: 182 VPK-EFSPGPSR------SSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFS 234
+ K E + SR S GY N G + S+ N GGFG S F
Sbjct: 190 LSKQEMASASSRKHRGYGSGGQGYGNQGSGYGGS--GSYDSYNNCGSGGGFGGGSGSNFG 247
Query: 235 PLATGRGGISPFG 247
G G + FG
Sbjct: 248 ----GGGSYNDFG 256
Score = 109 (43.4 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S SS P +K+F+ GL+ + +F+ G +VVM NT+ RGFGF+T
Sbjct: 14 SKSESSKSPEELRKLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVT 72
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
++ ++ H+++ ++VE KR V + S P
Sbjct: 73 KPWWRSL-AAMNARPHKVDERVVEPKRDVSRGDSQRP 108
Score = 63 (27.2 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 250 GYGVGMNLDGGLSPSYGGSSNFS--NSLGYGRMLGPFPGGNSNRF 292
GYG G G YGGS ++ N+ G G G F GG+ + F
Sbjct: 205 GYGSGGQGYGNQGSGYGGSGSYDSYNNCGSG---GGFGGGSGSNF 246
Score = 56 (24.8 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 299 SGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSG-NF 342
SGG G G+ + + G+GS +S N S G F G GSG NF
Sbjct: 208 SGGQGYGNQ---GSGYG--GSGSYDSYNNCGSGGGF-GGGSGSNF 246
Score = 46 (21.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG 276
G G + G G G GG ++GG ++ N G
Sbjct: 222 GSGSYDSYNNCGSGGGFG--GGSGSNFGGGGSY-NDFG 256
Score = 42 (19.8 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 272 SNSLGYGRMLGPFPGGNS----NRFSTPVGFSGGNG 303
S GYG + G S N + GF GG+G
Sbjct: 208 SGGQGYGNQGSGYGGSGSYDSYNNCGSGGGFGGGSG 243
>UNIPROTKB|F1PD20 [details] [associations]
symbol:F1PD20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03013453
Ensembl:ENSCAFT00000007675 Uniprot:F1PD20
Length = 309
Score = 210 (79.0 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 70/212 (33%), Positives = 96/212 (45%)
Query: 99 SPGPGRTK--KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
SPG R IFVGG+ E + +Q+G + + + D RGF F+T+D
Sbjct: 86 SPGDSRRPGAHIFVGGIKGDPEEHHPRDCLEQYGNVEVMETVTDRGRGEERGFAFVTFDD 145
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPK-EFSPGPSRSSMIGYNNFGFNRPTNL--LNSF 213
++VD+++ + H G EV++A+ K E + PS G N G R + +SF
Sbjct: 146 HDSVDKIVIQKCHPGKGHSCEVRKALWKQEMARAPSSQRGSGSGNLGGGRGAGVGGNDSF 205
Query: 214 AQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGV-GMNLDG---GLSPSYGGSS 269
+ NLS GGFG SR G GG +GG+G G G DG G SY
Sbjct: 206 GRGGNLSGRGGFG---GSR------GGGG---YGGSGDGPHGFGNDGSHFGGGRSYNDFG 253
Query: 270 NFSNSLGYGRMLGPFPGGN-SNRFSTPVGFSG 300
N++N GP GGN R S P G G
Sbjct: 254 NYNNQ---SSNFGPMKGGNFGGRSSGPYGGGG 282
Score = 128 (50.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 34/107 (31%), Positives = 52/107 (48%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
+F+GGI D +E ++ +YG V + DR G RGF FV F D +++++ K
Sbjct: 97 IFVGGIKGDPEEHHPRDCLEQYGNVEVMETVTDRGRGEERGFAFVTFDDHDSVDKIVIQK 156
Query: 68 -HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGG 112
H G + E +KA+ + Q M +S S G G + VGG
Sbjct: 157 CHPGKGHSCEVRKALWK--QEMARAPSSQRGSGSGNLGGGRGAGVGG 201
Score = 114 (45.2 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFG 50
E L KLFIGG+S +T +E L+ + ++G + + V MRD R+RGFG
Sbjct: 9 EPQLRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFG 57
Score = 109 (43.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
+S SP + +K+F+GGL+ T+ + + +Q+G + D V M D +R RGFG
Sbjct: 1 TSKSESPKEPQLRKLFIGGLSLETTDESLRSHSEQWGRLADCVAMRDPKAKRSRGFGVGP 60
Query: 154 YDSEEA 159
EEA
Sbjct: 61 GPLEEA 66
Score = 60 (26.2 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 31/96 (32%), Positives = 42/96 (43%)
Query: 262 SPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGS 321
+PS S S +LG GR G GGN + F SG G G S +G GS
Sbjct: 179 APSSQRGSG-SGNLGGGRGAGV--GGNDS-FGRGGNLSGRGGFG----GSRGGGGYG-GS 229
Query: 322 LNSATNPASPGAFLGSG-SGNFEVSFGNNSVNWGPV 356
+ + G+ G G S N ++ N S N+GP+
Sbjct: 230 GDGPHGFGNDGSHFGGGRSYNDFGNYNNQSSNFGPM 265
Score = 40 (19.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG +G G ++ S G+YN
Sbjct: 228 GSGDGPHGFGNDGSHFGGGRSYNDFGNYN 256
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 272 (100.8 bits), Expect = 3.0e-23, P = 3.0e-23
Identities = 76/261 (29%), Positives = 124/261 (47%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ L KLFIGG+S++T ++ L+E+F ++ + V+M D T R+R FGFV ++ +
Sbjct: 9 QEQLSKLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYSCVKEVD 67
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+ + H +DG VE K+ R+D + + KKIF+GG+ E
Sbjct: 68 AAMCARPHKVDGCVVEPKRPF-REDS--VKPVVCLL--------AKKIFIGGIKEDTEEH 116
Query: 121 DFKKYFDQFGTITDVVVMY-DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
+ + YF+++G I + +M D + RGF F+T+D VD+++ + H +N +VK
Sbjct: 117 NLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVVQKCHTINRHNCDVK 176
Query: 180 RAVPKEFSPGPSRSSMIGYNNFGF-NRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLAT 238
+A K+ P G + F R N + R N G FG R +
Sbjct: 177 KAPSKQEMPSVRSQRCRGGRSSNFMGRGGNFGHG---RRNFGHGGNFGGRGGGSGGSRGS 233
Query: 239 GRGGISPFGGAGYGVGMNLDG 259
GG + G G G G N +G
Sbjct: 234 YGGGDGRYNGFG-GDGCNYNG 253
Score = 141 (54.7 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H+ + K+F+GGL+ ++ +++F+Q+ +T VVM D T+R R FGF+TY
Sbjct: 4 HNPKEQEQLSKLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYSC 62
Query: 157 EEAVDRVLHKTFHELNGKMVEVKR 180
+ VD + H+++G +VE KR
Sbjct: 63 VKEVDAAMCARPHKVDGCVVEPKR 86
Score = 55 (24.4 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 21/52 (40%), Positives = 22/52 (42%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSN 290
GRGG G +G G N GG GGS S G GR G F G N
Sbjct: 202 GRGGNFGHGRRNFGHGGNF-GGRGGGSGGSRG-SYGGGDGRYNG-FGGDGCN 250
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 267 (99.0 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 80/255 (31%), Positives = 126/255 (49%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S+ T EE L+ +F ++ ++ V+MRD T R+RG GF + V E
Sbjct: 18 LRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYT--TVEE--- 72
Query: 65 MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKK 124
MD M K D +++R S PG T KIF+ G+ E +
Sbjct: 73 MDAAM----NARPHKV----DGRVVSREDSQ---RPGAHLTVKIFISGIKEDTEEHHLRD 121
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
YF+Q+ I + +M D +++ R F F+T+D ++VD++ + +H +NG EV++A+ K
Sbjct: 122 YFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNGHNCEVRKALSK 181
Query: 185 EFSPGPSRS----SMIG-YNNFGFNRPT---NLLNSFAQRYNLSPAGGFGVRMDSRFSPL 236
+ S S S G YNN G +R + ++F + + G + S F P+
Sbjct: 182 QEMASASSSQRGESGSGNYNNGG-DRGSFGGGSGSNFGDGGSYNDFGNYN-NQSSNFRPM 239
Query: 237 ATGR-GGIS--PFGG 248
GG S P+GG
Sbjct: 240 KGANFGGRSSGPYGG 254
Score = 161 (61.7 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ TE + +F+Q+ T+ VVM D NT+R RG GF T
Sbjct: 7 SKSESLKEPEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDT 66
Query: 154 YDSEEAVDRVLHKTFHELNGKMV 176
Y + E +D ++ H+++G++V
Sbjct: 67 YTTVEEMDAAMNARPHKVDGRVV 89
Score = 58 (25.5 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 20/49 (40%), Positives = 22/49 (44%)
Query: 247 GGAGYGVGMNL-DGGLSPSYGG----SSNFSNSLGY---GRMLGPFPGG 287
G G G G N DGG +G SSNF G GR GP+ GG
Sbjct: 207 GSFGGGSGSNFGDGGSYNDFGNYNNQSSNFRPMKGANFGGRSSGPYGGG 255
Score = 47 (21.6 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 282 GPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATN--PASPGAFLGSGS 339
G GN N F GG+G ++N +GN + N ++N P F G S
Sbjct: 193 GESGSGNYNNGGDRGSFGGGSGSNFG--DGGSYNDFGNYN-NQSSNFRPMKGANFGGRSS 249
Query: 340 GNF 342
G +
Sbjct: 250 GPY 252
Score = 42 (19.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 318 GNGSLNSATNPASPGAFLGS--GSGNFEVSFGN---NSVNWGPV 356
G+G+ N+ + S G GS G G FGN S N+ P+
Sbjct: 196 GSGNYNNGGDRGSFGGGSGSNFGDGGSYNDFGNYNNQSSNFRPM 239
Score = 38 (18.4 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG+++ G S + S+ G GSYN
Sbjct: 196 GSGNYNNGGDRGSFGGGSGSNFGDGGSYN 224
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 267 (99.0 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 82/251 (32%), Positives = 121/251 (48%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ + S + +M D T +RGF FV +A + +
Sbjct: 12 LRKLFIGGLSFETTDESLRSHCSHS----PSCVMTDPNTKCSRGFRFVTYATVEEVDAAM 67
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H +D R VE K+ V R+ PG T KKIF GG+ E
Sbjct: 68 NARPHKVDRRVVEPKRGVSREGSQR-----------PGAHLTVKKIFAGGIKEDTEERHL 116
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF++ G I + +M D ++ + RGF F+T+D ++VD+ + + +H +NG E R+
Sbjct: 117 RDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNRERGRSG 176
Query: 183 PKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPL-ATGRG 241
F G R GYN FG N +N F + S G + R S F P+ G
Sbjct: 177 SGNFGGG--RGGGDGYNGFG-NDGSN----FGGGGSYSDFGNYNNR-SSNFGPVKGENFG 228
Query: 242 GIS--PFGGAG 250
G S P GG G
Sbjct: 229 GRSSGPDGGGG 239
Score = 142 (55.0 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
PG+ +K+F+GGL+ T+ + + + VM D NT+ RGF F+TY + E VD
Sbjct: 9 PGQLRKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVD 64
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
++ H+++ ++VE KR V +E S P
Sbjct: 65 AAMNARPHKVDRRVVEPKRGVSREGSQRP 93
Score = 79 (32.9 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 239 GRGGISPFGGA-GYGVGMNLDGGLSPSYGGSSNFSNSLGYGRM---LGPFPGGN-SNRFS 293
GR G FGG G G G N G ++GG ++S+ Y GP G N R S
Sbjct: 173 GRSGSGNFGGGRGGGDGYNGFGNDGSNFGGGGSYSDFGNYNNRSSNFGPVKGENFGGRSS 232
Query: 294 TPVGFSGGNGR 304
P GG GR
Sbjct: 233 GP---DGGGGR 240
Score = 56 (24.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/72 (33%), Positives = 31/72 (43%)
Query: 286 GGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEV 344
G N R + G F GG G GD +N +GN N F G GS +
Sbjct: 167 GHNRERGRSGSGNFGGGRGGGDG------YNGFGNDGSN----------FGGGGSYSDFG 210
Query: 345 SFGNNSVNWGPV 356
++ N S N+GPV
Sbjct: 211 NYNNRSSNFGPV 222
Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYNVTSRQSTRG 474
G G G G +N S G+YN +R S G
Sbjct: 185 GGGDGYNGFGNDGSNFGGGGSYSDFGNYN--NRSSNFG 220
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 267 (99.0 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 79/226 (34%), Positives = 107/226 (47%)
Query: 104 RTKKIFVGGL-ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162
RTKKIFVGGL A+TV E D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V++
Sbjct: 47 RTKKIFVGGLSANTVVE-DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 105
Query: 163 VLHKTFHELNGKMVEVKRAVPKE--FSPGP-SRSSMIGYNNFGFNRPTNLLN--SFAQRY 217
V FHE+N KMVE K+A PKE F PG R+ + Y F +L +F Y
Sbjct: 106 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY 165
Query: 218 NLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG- 276
G F +F G P A G +P+ G +NS G
Sbjct: 166 GRGYPG-FAPSYGYQFPGFPAAAYG--PVAAAAVAAARG--SGSNPARPGGFPGANSPGP 220
Query: 277 YGRMLGPFP--GGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNG 320
+ GP G N S G+G G + + NG
Sbjct: 221 VADLYGPASQDSGVGNYISA-ASPQPGSGFGHGIAGPLIATAFTNG 265
Score = 178 (67.7 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 35/79 (44%), Positives = 55/79 (69%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+F+GG+S +T E +K+YF ++G+V +A++M D+ T R RGFGFV F + V E+V +
Sbjct: 50 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 109
Query: 66 DKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 110 HFHEINNKMVECKKAQPKE 128
Score = 48 (22.0 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 324 SATNPASPGAFLGSGS 339
S +NPA PG F G+ S
Sbjct: 202 SGSNPARPGGFPGANS 217
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 263 (97.6 bits), Expect = 3.1e-22, P = 3.1e-22
Identities = 88/298 (29%), Positives = 132/298 (44%)
Query: 10 IGGISWDTDEERLK--EYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
I G+S++T +E LK E S + ++MRD T R+RGFGFV + + + +
Sbjct: 18 IRGLSFETTDESLKTMENTSNF------LVMRDPNTKRSRGFGFVPYTTVEEVDATMNAR 71
Query: 68 -HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPG-PGRTKKIFVGGLASTVTESDFKKY 125
H + GR V K+ +++ PG P KK+ VGG+ E + Y
Sbjct: 72 PHKVGGRVVGPKRVSCGMEKSQ----------RPGAPLTMKKVLVGGINEDTEEHHLRDY 121
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F+ +G + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++A+ K+
Sbjct: 122 FEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 181
Query: 186 --FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGI 243
S S+ G NFG R F N G F D F + G GG
Sbjct: 182 ERASASSSQRGRSGSGNFGGGRG----GGFGSNDNFGSGGNFCGHGD--FGG-SHGGGGY 234
Query: 244 SPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN-SNRFSTPVGFSG 300
GG GY G DG G ++F N GGN R S P G G
Sbjct: 235 G--GGDGYN-GFGNDGSNFGGGGNDNDFDNDNNRSEFWTD-EGGNFGGRHSGPHGGRG 288
Score = 160 (61.4 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 32/83 (38%), Positives = 53/83 (63%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYG--EVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
K+ +GGI+ DT+E L++YF YG EV+E IM DR + + RGF FV F D ++++
Sbjct: 103 KVLVGGINEDTEEHHLRDYFEWYGKTEVIE--IMTDRGSVKKRGFAFVTFDDHDSVDKIV 160
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQ 86
+ K H ++G E +KA+ + ++
Sbjct: 161 IQKYHTVNGHNCEVRKALSKQER 183
Score = 51 (23.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 20/67 (29%), Positives = 29/67 (43%)
Query: 288 NSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFG 347
+S R + G GG GRG S+ + GN + + G G G G + FG
Sbjct: 188 SSQRGRSGSGNFGG-GRGGGFGSNDNFGSGGNFCGHGDFGGSHGGGGYGGGDG-YN-GFG 244
Query: 348 NNSVNWG 354
N+ N+G
Sbjct: 245 NDGSNFG 251
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 263 (97.6 bits), Expect = 3.1e-22, P = 3.1e-22
Identities = 58/159 (36%), Positives = 92/159 (57%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T ++ L+E+F ++ + + V+MRD T R+RGFGFV V +
Sbjct: 14 KLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFVYSCVEEVDAAMCAR 72
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTESDFKKY 125
H +DG VE K+A+ R+D S+ PG KKIFVGG+ E + + Y
Sbjct: 73 PHKVDGHVVEPKRAISRED---------SV--KPGAHLMVKKIFVGGIKEDTEEYNLRDY 121
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
F+ +G I + V+ D + + RGF F+T+D + VD+++
Sbjct: 122 FE-YGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIV 159
Score = 182 (69.1 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 38/100 (38%), Positives = 60/100 (60%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F ++ T+TD VVM D T+R RGFGF+ Y
Sbjct: 4 HDPKEPEQRRKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFV-YSC 61
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMI 196
E VD + H+++G +VE KRA+ +E S P M+
Sbjct: 62 VEEVDAAMCARPHKVDGHVVEPKRAISREDSVKPGAHLMV 101
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 262 (97.3 bits), Expect = 4.0e-22, P = 4.0e-22
Identities = 74/228 (32%), Positives = 114/228 (50%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E +L KLFIGG+S++T ++ L+E+F ++G + D R+RGFGF+ ++ +
Sbjct: 28 EKELRKLFIGGLSFETTDDSLREHFEKWGTLT------DCGNKRSRGFGFLTYSCVEEVD 81
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPG-RTKKIFVGGLASTVTE 119
+ + H R V K+AV R+D S+ PG KK++VGG+ E
Sbjct: 82 AAVCARPHKAAVRVV-GKRAVSRED---------SV--KPGAHLMVKKLYVGGIKEDTEE 129
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
+ + YF ++G I + VM + + RGF F+T+D + VD++L K H +NG EV
Sbjct: 130 YNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQK-HHAINGNNCEVG 188
Query: 180 RAVPKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFG 226
+ + KE S G R NF R N F R N GG+G
Sbjct: 189 KVLSKEMQSAGSQRGRGGASGNF-MGRGGN----FGGR-NFGGRGGYG 230
Score = 148 (57.2 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 38/111 (34%), Positives = 62/111 (55%)
Query: 87 NMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQR 145
++L R + HS PG + +K+F+GGL+ T+ +++F+++GT+TD +R
Sbjct: 13 SLLGRWGTGKHS-PGTEKELRKLFIGGLSFETTDDSLREHFEKWGTLTDC------GNKR 65
Query: 146 PRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMI 196
RGFGF+TY E VD + H+ ++V KRAV +E S P M+
Sbjct: 66 SRGFGFLTYSCVEEVDAAVCARPHKAAVRVVG-KRAVSREDSVKPGAHLMV 115
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 266 GGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNG 303
GG+S N +G G G F G N F G+ GG G
Sbjct: 205 GGASG--NFMGRG---GNFGGRN---FGGRGGYGGGGG 234
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 260 (96.6 bits), Expect = 6.6e-22, P = 6.6e-22
Identities = 84/275 (30%), Positives = 126/275 (45%)
Query: 43 TGRARGFGFVVFADPAVAERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPG 101
T R+RGFGFV + + + H +DGR VE K+A+ R+D + + +
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQRPDAHLT------- 53
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
KKIFVG + E + YF+Q+G I + +M D +++ RGF F+T+D ++VD
Sbjct: 54 ---VKKIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVD 110
Query: 162 RVLHKTFHELNGK-MVEVKRAVPKEFSPGPSRSSMIGYNNF--GFNRPTNLLNSFAQRYN 218
+++ + +H +NG EV++ + K+ S S G N G+ + S Q
Sbjct: 111 KIVTQKYHTVNGHHKCEVRKPLSKQEMASASFSQR-GRNGSRTGYPGGSRGYGSGGQDCG 169
Query: 219 LSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYG 278
+ G+G + G GG S FG G N GG SY N++N
Sbjct: 170 -NQGSGYGG--SGSYDSYNNGGGG-SSFGS---GSRRNFGGG--GSYSDFGNYNN----- 215
Query: 279 RMLGPFPGGNSN-RFSTPVGFSGGNGRGDSVLSST 312
GP GGN R S P GG G G S SS+
Sbjct: 216 --FGPMKGGNFGARSSGPN--DGGGGYGGSSSSSS 246
Score = 150 (57.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+G I DT+E L++YF +YG++ IM DR + + RGF FV F D ++++
Sbjct: 56 KIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQ 115
Query: 67 K-HMIDGR-TVEAKKAVPRDDQNMLNRNTS 94
K H ++G E +K P Q M + + S
Sbjct: 116 KYHTVNGHHKCEVRK--PLSKQEMASASFS 143
Score = 68 (29.0 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 30/96 (31%), Positives = 44/96 (45%)
Query: 261 LSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNG 320
LS S++FS G G +PGG+ S G GN +G S +++ + NG
Sbjct: 132 LSKQEMASASFSQRGRNGSRTG-YPGGSRGYGSG--GQDCGN-QGSGYGGSGSYDSYNNG 187
Query: 321 SLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
S+ S F G GS + FGN + N+GP+
Sbjct: 188 GGGSSFGSGSRRNFGGGGSYS---DFGNYN-NFGPM 219
Score = 44 (20.5 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 28/91 (30%), Positives = 36/91 (39%)
Query: 266 GGSSNF-SNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNS 324
GGS + S G G GG+ + S ++ G G G S S + N G GS +
Sbjct: 156 GGSRGYGSGGQDCGNQ-GSGYGGSGSYDS----YNNGGG-GSSFGSGSRRNFGGGGSYSD 209
Query: 325 ATNPASPGAFLGSGSGNFEV-SFGNNSVNWG 354
N + G G GNF S G N G
Sbjct: 210 FGNYNNFGPMKG---GNFGARSSGPNDGGGG 237
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 227 (85.0 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 54/175 (30%), Positives = 91/175 (52%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KL IGG+ + T E L+ +F ++G + V+MRD T R+R GFV + + +
Sbjct: 22 LHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAM 81
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ +DGR V+ K+AV R+D PG T KKIF GG+ E +
Sbjct: 82 NARPQKMDGRLVKPKRAVSREDSQR-----------PGTQLTVKKIFEGGIKEDTEEHNV 130
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE 177
+ YF+ +G I + +M D ++ + + F + D ++VD++ + +H +NG V+
Sbjct: 131 RDYFEHYGKIDMIEIMTDRSSGK-KEFALVPLDDHDSVDKIAIQKYHTVNGTTVK 184
Score = 185 (70.2 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 37/95 (38%), Positives = 58/95 (61%)
Query: 96 IHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 155
I S P + K+ +GGL T + +F+++GT TD VVM D NT+R R GF+TY+
Sbjct: 13 IESPKEPEQLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYN 72
Query: 156 SEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
+ E VD ++ +++G++V+ KRAV +E S P
Sbjct: 73 TVEEVDAAMNARPQKMDGRLVKPKRAVSREDSQRP 107
Score = 54 (24.1 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 256 NLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRG 305
N GG S+GG+ NF GGN FS+ GF G +G G
Sbjct: 185 NFGGGCGCSFGGNDNFGQ------------GGN---FSSHGGFGGSHGGG 219
Score = 45 (20.9 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 247 GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLG 282
GG G G N + G ++ F S G GR G
Sbjct: 188 GGCGCSFGGNDNFGQGGNFSSHGGFGGSHGGGRYGG 223
Score = 39 (18.8 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 211 NSFAQRYNLSPAGGFG 226
++F Q N S GGFG
Sbjct: 198 DNFGQGGNFSSHGGFG 213
Score = 39 (18.8 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 318 GNGSLNSATNPASPGAFLGS-GSGNF 342
GN + N +S G F GS G G +
Sbjct: 196 GNDNFGQGGNFSSHGGFGGSHGGGRY 221
>UNIPROTKB|F1SA31 [details] [associations]
symbol:F1SA31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:CU856608
Ensembl:ENSSSCT00000014866 Uniprot:F1SA31
Length = 332
Score = 257 (95.5 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 99/342 (28%), Positives = 156/342 (45%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAV---AERV 63
KLFIGG+S T + L Y+ ++G++ + V++RD + ++R F + F P + A R
Sbjct: 17 KLFIGGLSSQTTGKGLN-YYKQWGKL-DCVVIRDPTSQKSR-FILLHF-HPWLRVDAARA 72
Query: 64 IMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ IDG+ V K AVPR+D + PGP T KK+F+GGL E
Sbjct: 73 ATPRS-IDGKMVAPKHAVPRED-----------YGKPGPLVTVKKLFIGGLTEDTEEHHL 120
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF+++ I + ++ D + + RGFGF+T+D + VD++L K H +NG EV++A+
Sbjct: 121 RDYFEKYEKIDAIEIITDRQSSKIRGFGFVTFDDHDHVDKLLQKN-HTVNGHHAEVRKAL 179
Query: 183 PKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDS-RFSPLATGRG 241
+ S+ + + G T L +S N G R S R+ R
Sbjct: 180 SQ------SKIQEVQHFRSGKGGHTGLGDSPGGGGNFGAGPGRDFRGGSDRYLSGPGLRD 233
Query: 242 GISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG--YGRMLGPFPGGNSNRFSTPVGFS 299
G + G G + G YGG +S S G YG G G N G
Sbjct: 234 GYHVYRGGSEGSNCGVYSG----YGGPGGYS-STGHEYGNQDGGSEGVYDNCGRGNCGSE 288
Query: 300 GGNGRGDSVLSSTTWNVWGNGSLNSATNP--ASPGAFLGSGS 339
N + +S+ +++ +G L + N +S G G GS
Sbjct: 289 NYNDLRNYKQASSKYSLLKSGKLGGSRNMGGSSSGRNYGPGS 330
Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00046
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163
+ +K+F+GGL+S T Y+ Q+G + D VV+ D +Q+ R F + + VD
Sbjct: 14 KKEKLFIGGLSSQTTGKGLN-YYKQWGKL-DCVVIRDPTSQKSR-FILLHFHPWLRVDAA 70
Query: 164 LHKTFHELNGKMVEVKRAVPKEF--SPGP 190
T ++GKMV K AVP+E PGP
Sbjct: 71 RAATPRSIDGKMVAPKHAVPREDYGKPGP 99
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 202 (76.2 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 46/127 (36%), Positives = 74/127 (58%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++ +E L+ +F ++G + +V+MRD T R+ GFGFV +A + + +
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+ H +D R +E K+AV R+D + T + H + KKIFVG + E + Y
Sbjct: 61 RPHKVDERVLEPKRAVSRED----SERTGT-HLT-----VKKIFVGVVKEDTEEHHLRDY 110
Query: 126 FDQFGTI 132
F+Q+G I
Sbjct: 111 FEQYGKI 117
Score = 187 (70.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 35/81 (43%), Positives = 58/81 (71%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166
K+F+GGL+ T+ + +F+Q+GT+T+ VVM D NT+R GFGF+TY + E VD +++
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 167 TFHELNGKMVEVKRAVPKEFS 187
H+++ +++E KRAV +E S
Sbjct: 61 RPHKVDERVLEPKRAVSREDS 81
Score = 137 (53.3 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 48/165 (29%), Positives = 70/165 (42%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
KKIFVG + E + YF+Q+G I + GF F T+D ++VD+++
Sbjct: 91 KKIFVGVVKEDTEEHHLRDYFEQYGKI--------QRQWKKEGFCFFTFDDHDSVDKIVI 142
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGF 225
+ +H + G EV++ + K+ S SS G + +N F YN + + F
Sbjct: 143 QKYHTVGGHTCEVRKPLSKQEMASAS-SSQRGRSGSSYN-------GFGS-YN-NHSSKF 192
Query: 226 GVRMDSRFSPLATGRGGISPFGGAG-YGVGMNLDGGLSPSYGGSS 269
G F G GG P GG G Y GG S SS
Sbjct: 193 GPMKGGNF-----GGGGSGPDGGRGQYFAKPRSQGGYGGSSSSSS 232
Score = 115 (45.5 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+G + DT+E L++YF +YG++ + + GF F F D +++++
Sbjct: 92 KIFVGVVKEDTEEHHLRDYFEQYGKI--------QRQWKKEGFCFFTFDDHDSVDKIVIQ 143
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTS 94
K H + G T E +K P Q M + ++S
Sbjct: 144 KYHTVGGHTCEVRK--PLSKQEMASASSS 170
Score = 74 (31.1 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 27/66 (40%), Positives = 31/66 (46%)
Query: 220 SPAGGFGV--RMDSRFSPLATGR---GGISPFGGAG-YGVGMNLDGGLSPSYGGSSNFSN 273
S GFG S+F P+ G GG P GG G Y GG YGGSS+ S+
Sbjct: 177 SSYNGFGSYNNHSSKFGPMKGGNFGGGGSGPDGGRGQYFAKPRSQGG----YGGSSS-SS 231
Query: 274 SLGYGR 279
S G GR
Sbjct: 232 SYGSGR 237
Score = 42 (19.8 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 310 SSTTWNVWGNGSLNSAT-NPASPGAFLGSGSG 340
S +++N +G+ + +S+ P G F G GSG
Sbjct: 175 SGSSYNGFGSYNNHSSKFGPMKGGNFGGGGSG 206
>UNIPROTKB|J9P0Y4 [details] [associations]
symbol:J9P0Y4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03013644
Ensembl:ENSCAFT00000045249 OMA:SEEGYNG Uniprot:J9P0Y4
Length = 223
Score = 164 (62.8 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 48/145 (33%), Positives = 77/145 (53%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYG--EVV-----EAVIMRDRATGRARGFGFVVFADP 57
L KLF GG+S++T +E L+ + ++G VV + V++RD T R+R FG+ +
Sbjct: 1 LQKLFFGGLSFETTDESLRSHSEQWGILTVVCVLMRDYVVLRDSNTKRSRSFGYATMGE- 59
Query: 58 AVAERVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLAS 115
E ++ K H +DG VE K+ + ++ SS PG T +KIFVGG+
Sbjct: 60 --VEAIMNGKPHKVDGIAVELKRPISKE---------SS--QRPGAHLTLRKIFVGGIKE 106
Query: 116 TVTESDFKKYFDQFGTITDVVVMYD 140
E + YF+Q+G I +++ YD
Sbjct: 107 DAEEHHLRDYFEQYGKI-EMIDDYD 130
Score = 134 (52.2 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTIT-------DVVVMYDHNTQRPRGFGFITYDSEE 158
+K+F GGL+ T+ + + +Q+G +T D VV+ D NT+R R FG+ T E
Sbjct: 2 QKLFFGGLSFETTDESLRSHSEQWGILTVVCVLMRDYVVLRDSNTKRSRSFGYATMGEVE 61
Query: 159 AVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
A+ ++ H+++G VE+KR + KE S P
Sbjct: 62 AI---MNGKPHKVDGIAVELKRPISKESSQRP 90
Score = 73 (30.8 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 155 DSEEAVDRVLHKTFHELNGKMVEVKRAVPKE--FSPGPSRSSMIGYNNFG 202
D ++VD+++ + +H +NG EV++A+ K+ S S+ G NFG
Sbjct: 127 DDYDSVDKIIIQKYHTVNGHDSEVRKALSKQEMASASSSQRGPSGCGNFG 176
Score = 57 (25.1 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 23/60 (38%), Positives = 27/60 (45%)
Query: 239 GRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGY-GRMLGPFPGGNSNRFSTPVG 297
G G FGG G+G G GG GG S GY G + G + GG+SN S G
Sbjct: 168 GPSGCGNFGG-GHGSGF---GGNDNRGGGECGGSEE-GYNGFVKGGY-GGSSNNSSYDSG 221
>UNIPROTKB|F1NSZ7 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AADN02043198 EMBL:AADN02043199
EMBL:AADN02043200 EMBL:AADN02043201 IPI:IPI00576372
Ensembl:ENSGALT00000008924 ArrayExpress:F1NSZ7 Uniprot:F1NSZ7
Length = 262
Score = 231 (86.4 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21
Identities = 49/104 (47%), Positives = 67/104 (64%)
Query: 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163
RTKKIFVGGL+ T D K+YF+QFG +T ++ +D + R FGF+T++SE+ V++V
Sbjct: 18 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKV 77
Query: 164 LHKTFHELNGKMVEVKRAVPKE-FSPGPS---RSSMIGYNNFGF 203
FHE+N KMVE K+A PKE SP S RS ++ Y F
Sbjct: 78 CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAF 121
Score = 147 (56.8 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+F+GG+S +T E +K+YF ++G+V ++ DR R FGFV F + E+V +
Sbjct: 21 KIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKVCEI 80
Query: 66 DKHMIDGRTVEAKKAVPRD 84
H I+ + VE KKA P++
Sbjct: 81 HFHEINNKMVECKKAQPKE 99
Score = 42 (19.8 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 221 PAGGFGVRMDSRFSPLATGRG-GISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGR 279
P +G M + + A RG G +P G+ +G G ++ YG ++ S Y
Sbjct: 177 PLTAYGP-MAAAAAAAAVVRGTGSTPSRTGGF-LGTTSPGPMAELYGAANQDSGVSSYIS 234
Query: 280 MLGPFP 285
P P
Sbjct: 235 AASPAP 240
Score = 42 (19.8 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 237 ATGRGGISPFGGAGY--GVGM-NLDGGLSPSYGGSSNFSNSLGY 277
A GR + P+G + G+GM G + +Y S + GY
Sbjct: 107 ARGRSRVMPYGMDAFMLGIGMLGYPGFQAATYASRSYTGIAPGY 150
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 201 (75.8 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 157 (60.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 51/166 (30%), Positives = 78/166 (46%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGY-NNFGFNRPTNLLNSFAQRYNLSPAGG 224
++G+ + V +A + S SR G GF R + S GG
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRGGSAGGRGFFR-----GGRGRGRGFSRGGG 119
Query: 225 FGVRMDSRFSPLATGRGGISPF-----GGAGYGVGMNLDGGLSPSY 265
SRF + G GG + G GYG + G SY
Sbjct: 120 DRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYG-DRSSGGSYRDSY 164
Score = 66 (28.3 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYG 278
A GRG GG G G G + GG YGGS S S GYG
Sbjct: 98 AGGRGFFR--GGRGRGRGFSRGGG-DRGYGGSRFESRSGGYG 136
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 201 (75.8 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 152 (58.6 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 66 (28.3 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 30/80 (37%), Positives = 35/80 (43%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPG-GNSNRFSTP 295
A GRG GG G G G + GG YGG+ S S GYG + S +S
Sbjct: 98 AGGRGFFR--GGRGRGRGFSRGGG-DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDR 154
Query: 296 VGFSGGNGRGDSVLSSTTWN 315
SGG+ R DS S T N
Sbjct: 155 S--SGGSYR-DSYDSYATHN 171
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 201 (75.8 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 152 (58.6 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 66 (28.3 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 30/80 (37%), Positives = 35/80 (43%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPG-GNSNRFSTP 295
A GRG GG G G G + GG YGG+ S S GYG + S +S
Sbjct: 98 AGGRGFFR--GGRGRGRGFSRGGG-DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDR 154
Query: 296 VGFSGGNGRGDSVLSSTTWN 315
SGG+ R DS S T N
Sbjct: 155 S--SGGSYR-DSYDSYATHN 171
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 189 (71.6 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166
K+F+GGL+ T + + +F+Q GT+TD VV D NT+R RGFGF+TY + E VD ++
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 167 TFHELNGKMVEVKRAVPKEFSPGP 190
H+++ ++VE RAV +E S P
Sbjct: 61 RPHKVDARVVEPNRAVSREDSQRP 84
Score = 156 (60.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+S++T + + +F + G + + V+ RD T R+RGFGFV +A + +
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 67 K-HMIDGRTVEAKKAVPRDD 85
+ H +D R VE +AV R+D
Sbjct: 61 RPHKVDARVVEPNRAVSRED 80
Score = 133 (51.9 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 9 FIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKH 68
F+ GI DT+E L+ + +YG++ IM DR G+ R F FV F D + E V+ H
Sbjct: 86 FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHDLDEIVLQKYH 145
Query: 69 MIDGRTVEAKKAVPR 83
+ G E +KA+ +
Sbjct: 146 NVHGYNCEVRKALSK 160
Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 50/180 (27%), Positives = 77/180 (42%)
Query: 77 AKKAVPRD-DQNMLNRNTS-SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITD 134
A A P D ++ N + S S PG FV G+ E + ++Q+G I
Sbjct: 57 AMNARPHKVDARVVEPNRAVSREDSQRPG-----FVCGIKEDTEEHHLQNNYEQYGQIEV 111
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP---GPS 191
+ +M D + R F F+T+ + + VL K +H ++G EV++A+ K+ SP G
Sbjct: 112 IEIMTDRGLGKKRDFAFVTFHDHDLDEIVLQK-YHNVHGYNCEVRKALSKQ-SPDYSGGG 169
Query: 192 RSSMIGYNNFGFNRPTNLLNSFAQRYNLSPA-GGFGVRMDSRFSPLATGRGGISPFGGAG 250
R G N+G + YN + GGFG S F GG+ + G G
Sbjct: 170 RGYGSGGQNYGKQGSGYGGSGSYDTYNNGGSRGGFGGGSRSNF-------GGVRSYNGFG 222
Score = 78 (32.5 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 247 GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSG-GNGRG 305
GG GYG G G YGGS ++ ++ G G F GG+ + F ++G GN
Sbjct: 168 GGRGYGSGGQNYGKQGSGYGGSGSY-DTYNNGGSRGGFGGGSRSNFGGVRSYNGFGNYNN 226
Query: 306 DS 307
S
Sbjct: 227 QS 228
Score = 59 (25.8 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 26/87 (29%), Positives = 36/87 (41%)
Query: 262 SPSY-GGSSNF-SNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGD-SVLSST-TWNVW 317
SP Y GG + S YG+ + G S G GG G G S ++N +
Sbjct: 162 SPDYSGGGRGYGSGGQNYGKQGSGYGGSGSYDTYNNGGSRGGFGGGSRSNFGGVRSYNGF 221
Query: 318 GNGSLNSATN--PASPGAFLGSGSGNF 342
GN + N ++N G F G SG +
Sbjct: 222 GNYN-NQSSNFGRMKEGNFRGRSSGPY 247
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 201 (75.8 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 160 (61.4 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 55/181 (30%), Positives = 85/181 (46%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGY-NNFGFNRPTNLLNSFAQRYNLSPAGG 224
++G+ + V +A + S SR G GF R + S GG
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRGGSAGGRGFFR-----GGRGRGRGFSRGGG 119
Query: 225 FGVRMDSRFSPLATGRGGISPFGGA---GYGVGMNLDGGLSPSYGGS-SNFSNSLGYGRM 280
SRF + G GG + + G G G GG SY S ++ S G +
Sbjct: 120 DRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGDRSSGG---SYRDSYDSYGKSRSKGTV 176
Query: 281 L 281
L
Sbjct: 177 L 177
Score = 65 (27.9 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 26/77 (33%), Positives = 30/77 (38%)
Query: 217 YNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG 276
Y AGG G R RGG G GYG G + S YGGS ++ +S
Sbjct: 93 YRGGSAGGRGFFRGGRGRGRGFSRGG----GDRGYG-GSRFESR-SGGYGGSRDYYSSRS 146
Query: 277 YGRMLGPFPGGNSNRFS 293
G G G S R S
Sbjct: 147 QGGGYGDRSSGGSYRDS 163
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 242 (90.2 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 47/112 (41%), Positives = 74/112 (66%)
Query: 104 RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 163
++ KIFVGG+ E++ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+
Sbjct: 89 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 148
Query: 164 LHKTFHELNGKMVEVKRAVPKEF-SPGPSRSSMIGYNNFGFNRPTNLLNSFA 214
++ FH++ GK VEVKRA P++ S P + G + +G N N +A
Sbjct: 149 VNMHFHDIMGKKVEVKRAEPRDSKSQAPGQP---GASQWGSRVVPNAANGWA 197
Score = 223 (83.6 bits), Expect = 8.1e-18, P = 8.1e-18
Identities = 52/135 (38%), Positives = 76/135 (56%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRN-TSSIHSSPGPGRTKKIF--VGGLASTVTE 119
+ + H +DGR + PR D + N+ I + G ++ F G + V
Sbjct: 68 LASRPHTLDGRNQKG----PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 123
Query: 120 SDFKKYFDQ-FGTIT 133
D +K + FG IT
Sbjct: 124 YDAEKQRPRGFGFIT 138
Score = 174 (66.3 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADP-AVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 88 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 147
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQN 87
V M H I G+ VE K+A PRD ++
Sbjct: 148 AVNMHFHDIMGKKVEVKRAEPRDSKS 173
Score = 148 (57.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
++ G K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ +
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 158 EAVDRVLHKTFHELNGK 174
V VL H L+G+
Sbjct: 62 NCVGTVLASRPHTLDGR 78
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 242 (90.2 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 61/194 (31%), Positives = 100/194 (51%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
L + G+ W T E+ LK+YF +GEV+ + RD +G ++GFGFV F D +V+ +
Sbjct: 107 LIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIKVMSQR 166
Query: 68 HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPG-PGRTKKIFVGGLASTVTESDFKKYF 126
HMIDGR + K +P + + L + + P P R++K+FVG +T + +++F
Sbjct: 167 HMIDGRWCDCK--LP-NSKYFLEQ------AGPDEPMRSRKVFVGRCTEDMTADELRQFF 217
Query: 127 DQFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
Q+G +TDV + +P R F F+T+ ++ + + + G V + A PK
Sbjct: 218 MQYGEVTDVFI------PKPFRAFAFVTFADDQVAQSLCGEDLI-IKGTSVHISNAEPKH 270
Query: 186 ------FSPGPSRS 193
FS P RS
Sbjct: 271 NNIHHLFSNFPGRS 284
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 32/113 (28%), Positives = 53/113 (46%)
Query: 82 PRDDQNMLNRN--TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
P+D++ ++ S++ G +T + V GL TE D K YF FG + V V
Sbjct: 79 PKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKR 138
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEF--SPGP 190
D + +GFGF+ + E +V+ + H ++G+ + K K F GP
Sbjct: 139 DAKSGNSKGFGFVRFTDYETQIKVMSQR-HMIDGRWCDCKLPNSKYFLEQAGP 190
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 201 (75.8 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 152 (58.6 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 63 (27.2 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYG 278
A GRG GG G G G + GG YGG+ S S GYG
Sbjct: 98 AGGRGFFR--GGRGRGRGFSRGGG-DRGYGGNRFESRSGGYG 136
Score = 53 (23.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 22/59 (37%), Positives = 25/59 (42%)
Query: 217 YNLSPAGGFGVRMDSRFSPLATGRG-GISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Y AGG G R GRG G S GG G G N S YGGS ++ +S
Sbjct: 93 YRGGSAGGRGFFRGGR------GRGRGFSR-GGGDRGYGGNRFESRSGGYGGSRDYYSS 144
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 201 (75.8 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 152 (58.6 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 63 (27.2 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYG 278
A GRG GG G G G + GG YGG+ S S GYG
Sbjct: 98 AGGRGFFR--GGRGRGRGFSRGGG-DRGYGGNRFESRSGGYG 136
Score = 53 (23.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 22/59 (37%), Positives = 25/59 (42%)
Query: 217 YNLSPAGGFGVRMDSRFSPLATGRG-GISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNS 274
Y AGG G R GRG G S GG G G N S YGGS ++ +S
Sbjct: 93 YRGGSAGGRGFFRGGR------GRGRGFSR-GGGDRGYGGNRFESRSGGYGGSRDYYSS 144
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 240 (89.5 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 52/140 (37%), Positives = 83/140 (59%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + P KKIFVGGL+ E ++Y
Sbjct: 158 KEHKLNGKVIDPKRA-----KAMKTKE-------P----VKKIFVGGLSPDTPEEKIREY 201
Query: 126 FDQFGTITDVVVMYDHNTQR 145
F FG + + + D+ T +
Sbjct: 202 FGGFGEVESIELPMDNKTNK 221
Score = 198 (74.8 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 41/113 (36%), Positives = 67/113 (59%)
Query: 71 DGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKYFDQ 128
+G ++A K +D+ + N+S HS + + K+F+GGL+ T+ D K YF +
Sbjct: 64 EGAKIDASKN--EEDEG--HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSK 119
Query: 129 FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
FG + D + D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 120 FGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 256 (95.2 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 89/331 (26%), Positives = 139/331 (41%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
L + G+ W T E+ LKEYFS +GEV+ + +D TG ++GFGFV F D +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFD 127
HMIDGR + K +P Q S P R++K+FVG +T + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ-----------SPDEPLRSRKVFVGRCTEDMTADELQQFFA 212
Query: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEF 186
Q+G + DV + +P R F F+T+ ++ + + + G V + A PK
Sbjct: 213 QYGEVVDVFI------PKPFRAFAFVTFADDQVAQSLCGEDLI-IKGISVHISNAEPKHN 265
Query: 187 SPGP-SRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSP-LATGRGGIS 244
S R G N GF NS GG G S + G I+
Sbjct: 266 SNRQLERGGRFGGNPGGFGNQGGFGNS------RGGGGGLGNNQGSNMGGGMNFGAFSIN 319
Query: 245 PFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGP--------FPGGNSNRFSTPV 296
P A + G+ N S G + G F GN++ +
Sbjct: 320 PAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQPQGNMQREQNQGFSSGNNSYGGSNS 379
Query: 297 GFSGGNGRGDSVLSSTTWNVWGNGSLNSATN 327
G + G G + SS+ +N S++S ++
Sbjct: 380 GAAIGWGSASNAGSSSGFNGGFGSSMDSKSS 410
Score = 138 (53.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 60/263 (22%), Positives = 106/263 (40%)
Query: 82 PRDDQNMLNRN--TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
P+D++ ++ +S++ +T + V GL TE D K+YF FG + V V
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYN 199
D T +GFGF+ + E +V+ + H ++G+ + K K+ P RS +
Sbjct: 138 DIKTGHSKGFGFVRFTDYETQVKVMSQR-HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVG 196
Query: 200 NFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISP-FGGAGY---GVGM 255
+ + L F +Y F + F+ + ++ G G+ +
Sbjct: 197 RCTEDMTADELQQFFAQYG-EVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGISV 255
Query: 256 NLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWN 315
++ P + N + L G G PGG N+ GG G G++ S+
Sbjct: 256 HISNA-EPKH----NSNRQLERGGRFGGNPGGFGNQGGFGNSRGGGGGLGNNQGSNMGGG 310
Query: 316 V-WGNGSLNSATNPASPGAFLGS 337
+ +G S+N A A+ A S
Sbjct: 311 MNFGAFSINPAMMAAAQAALQSS 333
Score = 120 (47.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+G + D + L+++F++YGEVV+ I + R F FV FAD VA+ + +
Sbjct: 192 KVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCGE 246
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPG 101
+I G +V A P+ + N +PG
Sbjct: 247 DLIIKGISVHISNAEPKHNSNRQLERGGRFGGNPG 281
Score = 50 (22.7 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 34/125 (27%), Positives = 49/125 (39%)
Query: 193 SSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYG 252
S+M G NFG + + AQ S G G+ + +G P G
Sbjct: 305 SNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNN--QPQGNMQRE 362
Query: 253 VGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRG-DSVLSS 311
G + SYGGS N ++G+G G+S+ GF+GG G DS S
Sbjct: 363 QNQGFSSG-NNSYGGS-NSGAAIGWGSASN---AGSSS------GFNGGFGSSMDS--KS 409
Query: 312 TTWNV 316
+ W +
Sbjct: 410 SGWGM 414
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 256 (95.2 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 89/331 (26%), Positives = 139/331 (41%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
L + G+ W T E+ LKEYFS +GEV+ + +D TG ++GFGFV F D +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFD 127
HMIDGR + K +P Q S P R++K+FVG +T + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ-----------SPDEPLRSRKVFVGRCTEDMTADELQQFFA 212
Query: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEF 186
Q+G + DV + +P R F F+T+ ++ + + + G V + A PK
Sbjct: 213 QYGEVVDVFI------PKPFRAFAFVTFADDQVAQSLCGEDLI-IKGISVHISNAEPKHN 265
Query: 187 SPGP-SRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSP-LATGRGGIS 244
S R G N GF NS GG G S + G I+
Sbjct: 266 SNRQLERGGRFGGNPGGFGNQGGFGNS------RGGGGGLGNNQGSNMGGGMNFGAFSIN 319
Query: 245 PFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGP--------FPGGNSNRFSTPV 296
P A + G+ N S G + G F GN++ +
Sbjct: 320 PAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQPQGNMQREQNQGFSSGNNSYGGSNS 379
Query: 297 GFSGGNGRGDSVLSSTTWNVWGNGSLNSATN 327
G + G G + SS+ +N S++S ++
Sbjct: 380 GAAIGWGSASNAGSSSGFNGGFGSSMDSKSS 410
Score = 138 (53.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 60/263 (22%), Positives = 106/263 (40%)
Query: 82 PRDDQNMLNRN--TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
P+D++ ++ +S++ +T + V GL TE D K+YF FG + V V
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYN 199
D T +GFGF+ + E +V+ + H ++G+ + K K+ P RS +
Sbjct: 138 DIKTGHSKGFGFVRFTDYETQVKVMSQR-HMIDGRWCDCKLPNSKQSPDEPLRSRKVFVG 196
Query: 200 NFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISP-FGGAGY---GVGM 255
+ + L F +Y F + F+ + ++ G G+ +
Sbjct: 197 RCTEDMTADELQQFFAQYG-EVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGISV 255
Query: 256 NLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWN 315
++ P + N + L G G PGG N+ GG G G++ S+
Sbjct: 256 HISNA-EPKH----NSNRQLERGGRFGGNPGGFGNQGGFGNSRGGGGGLGNNQGSNMGGG 310
Query: 316 V-WGNGSLNSATNPASPGAFLGS 337
+ +G S+N A A+ A S
Sbjct: 311 MNFGAFSINPAMMAAAQAALQSS 333
Score = 120 (47.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+G + D + L+++F++YGEVV+ I + R F FV FAD VA+ + +
Sbjct: 192 KVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCGE 246
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPG 101
+I G +V A P+ + N +PG
Sbjct: 247 DLIIKGISVHISNAEPKHNSNRQLERGGRFGGNPG 281
Score = 50 (22.7 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 34/125 (27%), Positives = 49/125 (39%)
Query: 193 SSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYG 252
S+M G NFG + + AQ S G G+ + +G P G
Sbjct: 305 SNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNN--QPQGNMQRE 362
Query: 253 VGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRG-DSVLSS 311
G + SYGGS N ++G+G G+S+ GF+GG G DS S
Sbjct: 363 QNQGFSSG-NNSYGGS-NSGAAIGWGSASN---AGSSS------GFNGGFGSSMDS--KS 409
Query: 312 TTWNV 316
+ W +
Sbjct: 410 SGWGM 414
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 201 (75.8 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 150 (57.9 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 61 (26.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 27/79 (34%), Positives = 30/79 (37%)
Query: 217 YNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGM--NLDGGLSPSYGGSSNFSNS 274
Y AGG G R RGG G GYG G + GG YGGS ++ S
Sbjct: 93 YRGGSAGGRGFFRGGRSRGRGFSRGG----GDRGYGGGRFESRSGG----YGGSRDYYAS 144
Query: 275 LGYGRMLGPFPGGNSNRFS 293
G G G S R S
Sbjct: 145 RSQGGSYGYRSSGGSYRDS 163
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 201 (75.8 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 150 (57.9 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 61 (26.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 27/79 (34%), Positives = 30/79 (37%)
Query: 217 YNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGM--NLDGGLSPSYGGSSNFSNS 274
Y AGG G R RGG G GYG G + GG YGGS ++ S
Sbjct: 93 YRGGSAGGRGFFRGGRSRGRGFSRGG----GDRGYGGGRFESRSGG----YGGSRDYYAS 144
Query: 275 LGYGRMLGPFPGGNSNRFS 293
G G G S R S
Sbjct: 145 RSQGGSYGYRSSGGSYRDS 163
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 201 (75.8 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 150 (57.9 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 61 (26.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 27/79 (34%), Positives = 30/79 (37%)
Query: 217 YNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGM--NLDGGLSPSYGGSSNFSNS 274
Y AGG G R RGG G GYG G + GG YGGS ++ S
Sbjct: 93 YRGGSAGGRGFFRGGRSRGRGFSRGG----GDRGYGGGRFESRSGG----YGGSRDYYAS 144
Query: 275 LGYGRMLGPFPGGNSNRFS 293
G G G S R S
Sbjct: 145 RSQGGSYGYRSSGGSYRDS 163
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 201 (75.8 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M SD GKLF+GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGG 112
+ M+ +DGR + +A D NR+ S G GR F GG
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSD----NRSRGYRGGSAG-GRG--FFRGG 107
Score = 162 (62.1 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 56/179 (31%), Positives = 83/179 (46%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGY-NNFGFNRPTNLLNSFAQRYNLSPAGG 224
++G+ + V +A + S SR G GF R + S GG
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSDNRSRGYRGGSAGGRGFFR-----GGRGRGRGFSRGGG 119
Query: 225 FGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFS-NSLGYGRMLG 282
SRF + G GG Y + GG S GGS S +S G R G
Sbjct: 120 DRGYGGSRFESRSGGYGG-----SRDYYSSRSQGGGYDRSSGGSYRDSYDSYGKWRSKG 173
Score = 57 (25.1 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 23/72 (31%), Positives = 28/72 (38%)
Query: 217 YNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLG 276
Y AGG G R RGG G GYG G + S YGGS ++ +S
Sbjct: 93 YRGGSAGGRGFFRGGRGRGRGFSRGG----GDRGYG-GSRFESR-SGGYGGSRDYYSSRS 146
Query: 277 YGRMLGPFPGGN 288
G GG+
Sbjct: 147 QGGGYDRSSGGS 158
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 235 (87.8 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 69/215 (32%), Positives = 94/215 (43%)
Query: 100 PGP-GRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
PG + KK+FVGGL V E D ++F QFG + ++ D + + RGFGF+ + S +
Sbjct: 10 PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHD 69
Query: 159 AVDRVLHKTFHELNGKMVEVKRAVPKE--FSPGPSRSSMIGYNNFGFNRPTNLLNSFAQR 216
A D+ FH + G VEVK+AVPKE + G + G G R +
Sbjct: 70 AADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARGGRGGGRGRGGGGGGGGGRD 129
Query: 217 YN-LSPAGGFGVRMDSRFSPLAT--GRGGISPFGGAGYGVGMNLDGGLSP---SYGGSSN 270
N L+ GG G + G GG +GG+ YG G G S SYG +
Sbjct: 130 QNGLAKGGGGGYNSYGGYGGYGAYGGGGGGGSYGGSDYGNGFGGFGSYSQHQSSYGPMKS 189
Query: 271 FSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRG 305
G G L + NS + G GG G G
Sbjct: 190 GGGGGGGGGRL--YDRSNSGPYRGGYGGDGGGGYG 222
Score = 182 (69.1 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 40/99 (40%), Positives = 57/99 (57%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLF+GG+ D E L E+FS++G V +A I+ D+ +G+ RGFGFV F A++ +
Sbjct: 18 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVV 77
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGR 104
K H I G VE KKAVP++D + + G GR
Sbjct: 78 KFHPIQGHRVEVKKAVPKEDIHAGGGGARAARGGRGGGR 116
Score = 71 (30.1 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 36/110 (32%), Positives = 42/110 (38%)
Query: 237 ATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPV 296
A G G + GG G G G GG GG N L G G GG N +
Sbjct: 100 AGGGGARAARGGRGGGRGRGGGGG-----GGGGRDQNGLAKG---G---GGGYNSYGGYG 148
Query: 297 GFS--GGNGRGDSVLSSTTWNVWGN-GSLN---SATNPASPGAFLGSGSG 340
G+ GG G G S S N +G GS + S+ P G G G G
Sbjct: 149 GYGAYGGGGGGGSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGG 198
Score = 59 (25.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 20/57 (35%), Positives = 25/57 (43%)
Query: 199 NNFG-FNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVG 254
N FG F + +S+ + GG G R+ R S RGG GG GYG G
Sbjct: 169 NGFGGFGSYSQHQSSYGPMKSGGGGGGGGGRLYDR-SNSGPYRGGYGGDGGGGYGGG 224
Score = 50 (22.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 20/69 (28%), Positives = 25/69 (36%)
Query: 286 GGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVS 345
GG G GG GR + L+ G G NS GA+ G G G S
Sbjct: 110 GGRGGGRGRGGGGGGGGGRDQNGLAKG-----GGGGYNSYGGYGGYGAYGGGGGGG---S 161
Query: 346 FGNNSVNWG 354
+G + G
Sbjct: 162 YGGSDYGNG 170
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 229 (85.7 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 59/157 (37%), Positives = 84/157 (53%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFS--PGPSRS-SMIGYNNFGFNRPTNLL 210
Y + E VD ++ H+++G++VE KRAV +E S PG + I FG +R
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGFGGSRGGGGY 121
Query: 211 NSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFG 247
YN GFG S F G G + FG
Sbjct: 122 GGSGDGYN-----GFG-NDGSNFG----GGGSYNDFG 148
Score = 203 (76.5 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 47/114 (41%), Positives = 67/114 (58%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A + +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLAST 116
+ H +DGR VE K+AV R+D PG T KKIFVGG +
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQR-----------PGAHLTVKKIFVGGFGGS 115
Score = 52 (23.4 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 243 ISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFST 294
+ FGG+ G G GG Y G N ++ G G F GN N S+
Sbjct: 109 VGGFGGSRGGGGY---GGSGDGYNGFGNDGSNFGGGGSYNDF--GNYNNQSS 155
Score = 47 (21.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 240 RGGISPFGGAGYGV-GMNLDG---GLSPSYGGSSNFSN 273
RGG +GG+G G G DG G SY N++N
Sbjct: 116 RGG-GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 152
Score = 43 (20.2 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 18/56 (32%), Positives = 22/56 (39%)
Query: 297 GFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVN 352
GF G G G S +N +GN N F G GS N ++ N S N
Sbjct: 111 GFGGSRGGGGYGGSGDGYNGFGNDGSN----------FGGGGSYNDFGNYNNQSSN 156
Score = 42 (19.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 332 GAFLGSGSGNFEVSFGNNSVNWG 354
G + GSG G + FGN+ N+G
Sbjct: 119 GGYGGSGDG-YN-GFGNDGSNFG 139
Score = 41 (19.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 437 GSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
GSG G G +N S G+YN
Sbjct: 123 GSGDGYNGFGNDGSNFGGGGSYNDFGNYN 151
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 223 (83.6 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
Identities = 47/130 (36%), Positives = 73/130 (56%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
L + G+ W T E+ LKEYFS +GEV+ + +D TG ++GFGFV F + +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFD 127
HMIDGR + K +P Q S P R++K+FVG +TE + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ-----------SQDEPLRSRKVFVGRCTEDMTEDELREFFS 212
Query: 128 QFGTITDVVV 137
Q+G + DV +
Sbjct: 213 QYGDVMDVFI 222
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 59/255 (23%), Positives = 99/255 (38%)
Query: 82 PRDDQNMLNRN--TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
P+D++ ++ +S++ +T + V GL TE D K+YF FG + V V
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYN 199
D T +GFGF+ + E +V+ + H ++G+ + K K+ P RS +
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVG 196
Query: 200 NFGFNRPTNLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDG 259
+ + L F +Y V + F A + G + + G
Sbjct: 197 RCTEDMTEDELREFFSQYG----DVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKG 252
Query: 260 GLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGN 319
+S + NS G F GGN F GF G G + ++ N+ G
Sbjct: 253 -ISVHISNAEPKHNSNRQLERSGRF-GGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGG 310
Query: 320 GSLNS-ATNPASPGA 333
+ + + NPA A
Sbjct: 311 MNFGAFSINPAMMAA 325
Score = 129 (50.5 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+G + D E+ L+E+FS+YG+V++ I + R F FV FAD +A+ + +
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE 246
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPG 101
+I G +V A P+ + N + +PG
Sbjct: 247 DLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPG 281
Score = 69 (29.3 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
Identities = 26/113 (23%), Positives = 39/113 (34%)
Query: 246 FGGAGYGVGMNLDGGLSPSYGGSSNFSNS----LGYGRMLGPFPGGNSNRFSTPVGFSGG 301
FGG G G N GG S GG + N+ +G G G F + +
Sbjct: 276 FGGNPGGFG-N-QGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSS 333
Query: 302 NGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNSVNWG 354
G + S + + N P GSG+ ++ S ++ WG
Sbjct: 334 WGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWG 386
Score = 40 (19.1 bits), Expect = 7.1e-16, Sum P(2) = 7.1e-16
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 223 GGFGVRMDSRFS 234
GGFG MDS+ S
Sbjct: 399 GGFGSSMDSKSS 410
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 191 (72.3 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 35/82 (42%), Positives = 57/82 (69%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++TDE+ L+++FS +G + E V+++DR T R+RGFGF+ F +P A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 ERVI--MDKHMIDGRTVEAKKA 80
V+ M+ +DGR + A
Sbjct: 61 SDVMRAMNGESLDGRQIRVDHA 82
Score = 165 (63.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 48/148 (32%), Positives = 70/148 (47%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ + E V+
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 167 TFHE-LNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFG--FNRPTNLLNSFAQRYNLSPAG 223
E L+G+ + V A S +R G + G ++R + RY+ P G
Sbjct: 67 MNGESLDGRQIRVDHAGK---SARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDSRP-G 122
Query: 224 GFGVRMDSRFSPLATGRGGISPFGGAGY 251
G+G R + +GG + G Y
Sbjct: 123 GYGYGY-GRSRDYSGSQGGYDRYSGGNY 149
Score = 64 (27.6 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 23/57 (40%), Positives = 27/57 (47%)
Query: 237 ATGRGGISPFGGA--GYGVGM--NLDGGLSPSYGGSSNFSNSLG-YGRMLGPFPGGN 288
A GRG GG GYG G + GG YG S ++S S G Y R + GGN
Sbjct: 96 AHGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGSQGGYDR----YSGGN 148
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 181 (68.8 bits), Expect = 8.6e-19, Sum P(2) = 8.6e-19
Identities = 34/79 (43%), Positives = 54/79 (68%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-DPAVAERV-I 64
+ F+GG+ W TD++ L+ FS+YG+V+++ I+ DR TGR+RGFGFV FA D A+ + +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 65 MDKHMIDGRTVEAKKAVPR 83
M+ +DGR + +A R
Sbjct: 67 MNGQDLDGRNITVNEAQSR 85
Score = 138 (53.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 46/163 (28%), Positives = 68/163 (41%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166
+ FVGGL + + F ++G + D ++ D T R RGFGF+T+ S+EA+ + +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 167 -TFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGF 225
+L+G+ + V A + G G +G R + GG+
Sbjct: 67 MNGQDLDGRNITVNEAQSRRSDGGGGFGG--GGGGYGGQRREGGGGGYG-----GGGGGY 119
Query: 226 GVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGS 268
G R G G GG GYG G GG S GGS
Sbjct: 120 G---GGRSG--GGGGYGSRDGGGGGYGGG---GGGYGGSRGGS 154
Score = 74 (31.1 bits), Expect = 8.6e-19, Sum P(2) = 8.6e-19
Identities = 28/83 (33%), Positives = 32/83 (38%)
Query: 208 NLLNSFAQRYNLSPAGGFGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSY-G 266
N+ + AQ GGFG G GG GG GYG G + GG S G
Sbjct: 76 NITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGGGRSGGGGGYGSRDG 135
Query: 267 GSSNFSNSLG-YGRMLGPFPGGN 288
G + G YG G GGN
Sbjct: 136 GGGGYGGGGGGYGGSRGGSGGGN 158
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 186 (70.5 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 36/82 (43%), Positives = 55/82 (67%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M D GKL +GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKA 80
+ M+ +DGR + +A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
Score = 146 (56.5 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 27/76 (35%), Positives = 49/76 (64%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+ VGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 68 (29.0 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 32/78 (41%), Positives = 35/78 (44%)
Query: 241 GGISPF-GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG-- 297
GG F GG G G G + GG YGGS S S GY G NS+R G
Sbjct: 99 GGRGFFRGGRGRGRGFSRGGG-DRGYGGSRFDSRSGGYN---GSRDYYNSSRSQGGYGDR 154
Query: 298 FSGGNGRGDSVLSSTTWN 315
SGG+ R DS S T N
Sbjct: 155 SSGGSYR-DSYDSYATHN 171
Score = 57 (25.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 21/46 (45%), Positives = 23/46 (50%)
Query: 239 GRG-GISPFGG-AGYGVGMNLDGGLSPSYGGSSNFSNSL----GYG 278
GRG G S GG GYG G D S Y GS ++ NS GYG
Sbjct: 109 GRGRGFSRGGGDRGYG-GSRFDSR-SGGYNGSRDYYNSSRSQGGYG 152
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 187 (70.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 37/80 (46%), Positives = 54/80 (67%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
SD GKLFIGG+S+DT E+ L++ FS+YG + + R+R T R+RGFGFV F +P A+
Sbjct: 2 SDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKD 61
Query: 63 VI--MDKHMIDGRTVEAKKA 80
+ M+ +DGRT+ +A
Sbjct: 62 ALEGMNGKSVDGRTIRVDEA 81
Score = 159 (61.0 bits), Expect = 7.6e-11, P = 7.6e-11
Identities = 57/183 (31%), Positives = 78/183 (42%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+F+GGL+ TE + F ++G IT+V V + T R RGFGF+T+++ ++A D +
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIG-YNNFGFNRPTNLLNSFAQRYNLSPAGG 224
++G+ + V A K G RS G Y G R F + GG
Sbjct: 66 MNGKSVDGRTIRVDEA-GKGGGGGGGRSGGGGSYRGGGGGRGGG--GGFFRGGRGRGGGG 122
Query: 225 FGVRMDSRFSPLATGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPF 284
G R S GG GG GY G GG S GG N GYG +
Sbjct: 123 GGYGGGDR-SYGDRSYGG----GGGGYKSG---GGGYSSGGGGGYNRDRGSGYGDRSSSY 174
Query: 285 PGG 287
G
Sbjct: 175 KDG 177
Score = 66 (28.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 25/71 (35%), Positives = 28/71 (39%)
Query: 239 GRGGISPF--GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPV 296
GRGG F GG G G G GG SYG S GY G + G ++
Sbjct: 104 GRGGGGGFFRGGRGRGGGGGGYGGGDRSYGDRSYGGGGGGYKSGGGGYSSGGGGGYNRDR 163
Query: 297 GFSGGNGRGDS 307
G SG R S
Sbjct: 164 G-SGYGDRSSS 173
Score = 50 (22.7 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 241 GGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRF 292
GG +G YG G GG S GG + GY R G G S+ +
Sbjct: 127 GGDRSYGDRSYGGG----GGGYKSGGGGYSSGGGGGYNRDRGSGYGDRSSSY 174
>UNIPROTKB|F1PD64 [details] [associations]
symbol:F1PD64 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03002771
Ensembl:ENSCAFT00000021102 Uniprot:F1PD64
Length = 256
Score = 230 (86.0 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 80/262 (30%), Positives = 120/262 (45%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + K+F+ GL+ T + +F+Q+GT+TD V M D NT+ RG GF+T
Sbjct: 2 SKSESPKEPEQLWKLFIRGLSFETTNESLRSHFEQWGTLTDWVAMRDPNTKHSRGLGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTN---LL 210
Y + E VD ++ H+++G++VE KRAV ++ Y+N + + ++
Sbjct: 62 YATVEEVDAAMNTRPHKVDGRVVEPKRAVSRQ-DCHKKIPYCEKYHNCEVRKALSKQEMV 120
Query: 211 NSFAQRYNLSPAGGFGVRMDSRFSPLAT-GRGG-ISPFGG-AGYGVGMNLDGGLSPSYGG 267
++ + + S +G FG F G GG IS GG +G G DG Y G
Sbjct: 121 SASSSQRGRSGSGNFGGCRGGGFGGNDNFGCGGNISGRGGFSGSQGGGGYDGS-GDGYHG 179
Query: 268 SSNFSNSLGYGRMLGPFPGGNSNRFSTPVG-FSGGNGRGDSVLSSTTWNVWGNGSLNSAT 326
N ++ G G F GN N S+ G GGN G S +G G A
Sbjct: 180 FGNDGSNFGGGGSYNDF--GNYNNKSSNFGPMKGGNFGGRSS------GPYGGGGQYFA- 230
Query: 327 NPASPGAFLGSGSGNFEVSFGN 348
P + G GS S + S+G+
Sbjct: 231 KPRNQGGCGGSNSSSSSSSYGS 252
Score = 163 (62.4 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFI G+S++T E L+ +F ++G + + V MRD T +RG GFV +A + +
Sbjct: 13 LWKLFIRGLSFETTNESLRSHFEQWGTLTDWVAMRDPNTKHSRGLGFVTYATVEEVDAAM 72
Query: 65 MDK-HMIDGRTVEAKKAVPRDD 85
+ H +DGR VE K+AV R D
Sbjct: 73 NTRPHKVDGRVVEPKRAVSRQD 94
Score = 70 (29.7 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 32/95 (33%), Positives = 39/95 (41%)
Query: 267 GSSNFSNSLGYGRMLGPFPGGNSN-----RFSTPVGFSGGNGRGDSVLSSTTWNVWGNGS 321
GS NF G G F GGN N S GFSG G G S ++ +GN
Sbjct: 131 GSGNFGGCRG-----GGF-GGNDNFGCGGNISGRGGFSGSQGGGGYDGSGDGYHGFGNDG 184
Query: 322 LNSATNPASPGAFLGSGSGNFEVSFGNNSVNWGPV 356
N F G GS N ++ N S N+GP+
Sbjct: 185 SN----------FGGGGSYNDFGNYNNKSSNFGPM 209
Score = 51 (23.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 436 DGSGSFSYGLGTVSTNVAAKSSEGFIGSYN 465
DGSG +G G +N S G+YN
Sbjct: 171 DGSGDGYHGFGNDGSNFGGGGSYNDFGNYN 200
Score = 40 (19.1 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 80 AVPRDDQNMLNRNTSSIHSSPGPGR 104
A PR+ N+SS SS G GR
Sbjct: 230 AKPRNQGGCGGSNSSSSSSSYGSGR 254
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 221 (82.9 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 46/130 (35%), Positives = 72/130 (55%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
L + G+ W T E+ LK+YF +GEV+ + RD TG ++GFGFV F D +V+ +
Sbjct: 112 LIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQSKVMTQR 171
Query: 68 HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFD 127
HMIDGR + K +P Q + P R++K+FVG +T + +++F
Sbjct: 172 HMIDGRWCDCK--LPNSKQGI-----------DEPMRSRKVFVGRCTEDMTADELRQFFM 218
Query: 128 QFGTITDVVV 137
Q+G +TDV +
Sbjct: 219 QYGEVTDVFI 228
Score = 126 (49.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 67/274 (24%), Positives = 105/274 (38%)
Query: 78 KKAVPRDDQNMLNR--NTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDV 135
K+ V D++ ++ +S+ G +T + V GL +E D K YF FG + V
Sbjct: 80 KETVLPDNKRKMDEIDASSATKIKRGDQKTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMV 139
Query: 136 VVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSM 195
V D T +GFGF+ + E +V+ + H ++G+ + K K+ P RS
Sbjct: 140 QVKRDVKTGNSKGFGFVRFGDWETQSKVMTQR-HMIDGRWCDCKLPNSKQGIDEPMRSRK 198
Query: 196 IGYNNFGFNRPTNLLNSFAQRYN-----LSP----AGGFGVRMDSRFSPLATGRGGISPF 246
+ + + L F +Y P A F D + + G I
Sbjct: 199 VFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQVAAALCGEDLIIK- 257
Query: 247 GGAGYGVGMNLDGGLSPSYGGSSNFSNSLG-YGRMLGP--FPGGNSNRFSTPVGFSGGNG 303
GV +++ P + + G +G G F G SN GG G
Sbjct: 258 -----GVSVHISNA-EPKHNNTRQMMERAGRFGNGFGGQGFAGSRSNM--------GGGG 303
Query: 304 RGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGS 337
G S S+ N +GN +LN A A+ A S
Sbjct: 304 GGSS---SSLGN-FGNFNLNPAMMAAAQAALQSS 333
Score = 105 (42.0 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+G + D + L+++F +YGEV + I + R F FV FAD VA + +
Sbjct: 198 KVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKP-----FRAFAFVTFADDQVAAALCGE 252
Query: 67 KHMIDGRTVEAKKAVPRDD--QNMLNR 91
+I G +V A P+ + + M+ R
Sbjct: 253 DLIIKGVSVHISNAEPKHNNTRQMMER 279
Score = 66 (28.3 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 35/118 (29%), Positives = 45/118 (38%)
Query: 239 GRGGISPFGGAGY-GVGMNLDGGLSPSYGGSSNFSN-SLGYGRMLGPFPGGNSN----RF 292
GR G + FGG G+ G N+ GG S NF N +L M S+
Sbjct: 281 GRFG-NGFGGQGFAGSRSNMGGGGGGSSSSLGNFGNFNLNPAMMAAAQAALQSSWGMMGM 339
Query: 293 STPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGSGSGNFEVSFGNNS 350
SG +G S SS+ S NS +S G+GS + S G NS
Sbjct: 340 LAQQNQSGTSGTSTSGTSSSRDQAQTYSSANSNYGSSSAALGWGTGSNSGAASAGFNS 397
Score = 49 (22.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 427 TWRSATPELDGSGSFSYGLGTVSTNVAAKSSEGFIGSYNVTSRQSTRG 474
T+ SA GS S + G GT S + AA S GF S+ + + G
Sbjct: 365 TYSSANSNY-GSSSAALGWGTGSNSGAA--SAGFNSSFGSSMESKSSG 409
Score = 38 (18.4 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 431 ATPELDGSGSFSYGLGTVSTNVAA-KSSEGFIGSYNVTSRQSTRGTT 476
++ L G+F+ ++ AA +SS G +G ++ T GT+
Sbjct: 306 SSSSLGNFGNFNLNPAMMAAAQAALQSSWGMMGMLAQQNQSGTSGTS 352
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 187 (70.9 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++TDE+ L+++F +G + E V+++DR T R+RGFGF+ F DP A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHA 60
Query: 61 ERVI--MDKHMIDGRTVEAKKA 80
+ M+ +DGR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
Score = 160 (61.4 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 51/153 (33%), Positives = 70/153 (45%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDRVLH 165
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ D E A D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFG--FNRPTNLLNSFAQRYNLSPAG 223
L+G+ + V A S +R G + G ++R + RY+ P G
Sbjct: 67 MNGESLDGRQIRVDHAGK---SARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDSRPGG 123
Query: 224 ---GFGVRMDSRFSPLATGR--GGISPFGGAGY 251
G+G S GR GG + G Y
Sbjct: 124 YGYGYGYGYGYGRSRDYGGRSQGGYDRYSGGNY 156
Score = 63 (27.2 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 21/51 (41%), Positives = 23/51 (45%)
Query: 238 TGRGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGN 288
+GR P GG GYG G G S YGG S GY R + GGN
Sbjct: 114 SGRYDSRP-GGYGYGYGYGYGYGRSRDYGGRSQG----GYDR----YSGGN 155
Score = 46 (21.3 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 20/63 (31%), Positives = 25/63 (39%)
Query: 278 GRMLGPFPGGNSNRFSTPVGFSGGNGRGDSVLSSTTWNVWGNGSLNSATNPASPGAFLGS 337
GR + G S R T G G +GRG S +G+G +S P G G
Sbjct: 74 GRQIRVDHAGKSAR-GTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDS--RPGGYGYGYGY 130
Query: 338 GSG 340
G G
Sbjct: 131 GYG 133
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 187 (70.9 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
M S+ GKLF+GG++++TDE+ L+++FS +G + E V+++DR T R+RGFGF+ F +P A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 ERVI--MDKHMIDGRTVEAKKA 80
+ M+ +DGR + A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
Score = 172 (65.6 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 48/146 (32%), Positives = 68/146 (46%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+FVGGL E + +F FG I++VVV+ D TQR RGFGFIT+ + E A D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGF 225
L+G+ + V A S SR G ++R + RY+ P GG+
Sbjct: 67 MNGESLDGRQIRVDHAGK---SARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRP-GGY 122
Query: 226 GVRMDSRFSPLATGRGGISPFGGAGY 251
G R + +GG + G Y
Sbjct: 123 GYGY-GRSRDYSGSQGGYDRYSGGNY 147
Score = 62 (26.9 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 239 GRGGISPFGGA--GYGVGM--NLDGGLSPSYGGSSNFSNSLG-YGRMLGPFPGGN 288
GRG GG GYG G + GG YG S ++S S G Y R + GGN
Sbjct: 96 GRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGSQGGYDR----YSGGN 146
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 181 (68.8 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 35/80 (43%), Positives = 55/80 (68%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVF--ADPAVA 60
SD GKLFIGG++++T+E+ L++ F++YG + E V+++DR T R+RGFGFV F D A
Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61
Query: 61 ERVIMDKHMIDGRTVEAKKA 80
+ M+ +DGR + +A
Sbjct: 62 AMMAMNGKSVDGRQIRVDQA 81
Score = 144 (55.7 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 50/164 (30%), Positives = 77/164 (46%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+F+GGL E ++ F ++G I++VVV+ D T+R RGFGF+T+++ ++A D ++
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSSMIGYNNFGFNRPTNLLNSFAQRYNLSPAGGF 225
++G+ + V +A S G R G ++ G F R GG
Sbjct: 66 MNGKSVDGRQIRVDQAGK---SSGERRGGYRGGSSGG--------RGFF-RGGRGRGGGD 113
Query: 226 GVRMDSRFSPLATGRGGISPFGGAGY-GVGMNLDGGLSPSYGGS 268
SRF + G GG S G Y G G + G GGS
Sbjct: 114 RGYGSSRFDNRSGGYGGSS--GSRDYYGSGRS-QGSYGDRSGGS 154
Score = 68 (29.0 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 29/75 (38%), Positives = 30/75 (40%)
Query: 240 RGGISPFGGAGYGVGMNLDGGLSPSYGGSSNFSN-SLGYGRMLGPFPGGNSNRFSTPVGF 298
RGG S GG G+ G GG YG SS F N S GYG G S R G
Sbjct: 93 RGGSS--GGRGFFRGGRGRGGGDRGYG-SSRFDNRSGGYGGSSGSRDYYGSGRSQGSYGD 149
Query: 299 SGGNGRGDSVLSSTT 313
G DS S T
Sbjct: 150 RSGGSYRDSYDSYAT 164
Score = 50 (22.7 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 22/74 (29%), Positives = 28/74 (37%)
Query: 249 AGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG-FSGGNGRGDS 307
AG G G S GG F G G G G S+RF G + G +G D
Sbjct: 81 AGKSSGERRGGYRGGSSGGRGFFRGGRGRG---GGDRGYGSSRFDNRSGGYGGSSGSRDY 137
Query: 308 VLSSTTWNVWGNGS 321
S + +G+ S
Sbjct: 138 YGSGRSQGSYGDRS 151
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 199 (75.1 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 38/80 (47%), Positives = 58/80 (72%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
SD GKLFIGG+++DT+EE L++ FS+YG++ E V+++DR T R+RGFGFV F +P A+
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61
Query: 63 VIMDKH--MIDGRTVEAKKA 80
+M + +DGR + +A
Sbjct: 62 AMMAMNGKAVDGRQIRVDQA 81
Score = 146 (56.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 43/152 (28%), Positives = 74/152 (48%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+F+GGL E ++ F ++G I++VVV+ D T+R RGFGF+T+++ ++A D ++
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 166 KTFHELNGKMVEVKRAVPKEFSP-GPSRSSMIGYNNF---GFNRPTNLLNSFAQRYNLSP 221
++G+ + V +A G R G F G R + R++ +
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSGDRRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFD-NR 124
Query: 222 AGGFGVRMDSRFSPLATGR--GGISPFGGAGY 251
+GG+G SR ++GR G G Y
Sbjct: 125 SGGYGGSSGSR-DYYSSGRSQGSYGDRAGGSY 155
Score = 49 (22.3 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 21/72 (29%), Positives = 27/72 (37%)
Query: 249 AGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG-FSGGNGRGDS 307
AG G G S GG F G G G G S+RF G + G +G D
Sbjct: 81 AGKSSGDRRGGYRGGSSGGRGFFRGGRGRG---GGDRGYGSSRFDNRSGGYGGSSGSRDY 137
Query: 308 VLSSTTWNVWGN 319
S + +G+
Sbjct: 138 YSSGRSQGSYGD 149
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 186 (70.5 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 36/82 (43%), Positives = 55/82 (67%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA--DPA 58
M D GKL +GG+S+DT+E+ L++ FS+YG++ E V+++DR T R+RGFGFV F D A
Sbjct: 1 MALDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 59 VAERVIMDKHMIDGRTVEAKKA 80
+ M+ +DGR + +A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
Score = 146 (56.5 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 27/76 (35%), Positives = 49/76 (64%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDRVLH 165
K+ VGGL+ E ++ F ++G I++VVV+ D TQR RGFGF+T+++ ++A D ++
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 166 KTFHELNGKMVEVKRA 181
++G+ + V +A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Score = 62 (26.9 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 29/70 (41%), Positives = 32/70 (45%)
Query: 241 GGISPF-GGAGYGVGMNLDGGLSPSYGGSSNFSNSLGYGRMLGPFPGGNSNRFSTPVG-- 297
GG F GG G G G + GG YGGS S S GY G NS+R G
Sbjct: 99 GGRGFFRGGRGRGRGFSRGGG-DRGYGGSRFDSRSGGYN---GSRDYYNSSRSQGGYGDR 154
Query: 298 FSGGNGRGDS 307
SGG+ R DS
Sbjct: 155 SSGGSYR-DS 163
Score = 57 (25.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 21/46 (45%), Positives = 23/46 (50%)
Query: 239 GRG-GISPFGG-AGYGVGMNLDGGLSPSYGGSSNFSNSL----GYG 278
GRG G S GG GYG G D S Y GS ++ NS GYG
Sbjct: 109 GRGRGFSRGGGDRGYG-GSRFDSR-SGGYNGSRDYYNSSRSQGGYG 152
WARNING: HSPs involving 1074 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 522 460 0.00095 118 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1324
No. of states in DFA: 609 (65 KB)
Total size of DFA: 264 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.03u 0.12s 40.15t Elapsed: 00:00:04
Total cpu time: 40.13u 0.13s 40.26t Elapsed: 00:00:04
Start: Sat May 11 14:11:08 2013 End: Sat May 11 14:11:12 2013
WARNINGS ISSUED: 2