BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009931
(522 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 109/192 (56%), Positives = 152/192 (79%), Gaps = 4/192 (2%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
M+SD GKLF+GGISW+TDE++L+E+F+ YGEV +A++MRD+ TGR RGFGFV+F+DP+V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 ERVIMDKHMIDGRTVEAKKAVPRDDQNMLNR----NTSSIHSSPGPGRTKKIFVGGLAST 116
+RV+ +KH ID R V+ K+A+ R++Q + R NTS +TKKIFVGGL T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMV 176
+T+ +F++YF+ +G +TDV +MYD T RPRGFGF+++DSE+AVD VLHKTFH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 177 EVKRAVPKEFSP 188
EVKRA+PK+ +P
Sbjct: 181 EVKRALPKDANP 192
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 126/191 (65%), Gaps = 15/191 (7%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SW T + L++YFS++GE+ E ++MRD T R+RGFGFV FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ H +D +T++ K A PR Q + RTKKIFVGGL++
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVE 124
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V++V FHE+N KMVE K+
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 184
Query: 181 AVPKE--FSPG 189
A PKE F PG
Sbjct: 185 AQPKEVMFPPG 195
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 126/191 (65%), Gaps = 15/191 (7%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SW T + L++YFS++GE+ E ++MRD T R+RGFGFV FADPA +
Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ H +D +T++ K A PR Q + RTKKIFVGGL++
Sbjct: 77 KVLGQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVE 124
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
D K+YF+QFG + D ++M+D T R RGFGF+T+++E+ V++V FHE+N KMVE K+
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 184
Query: 181 AVPKE--FSPG 189
A PKE F PG
Sbjct: 185 AQPKEVMFPPG 195
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 121/186 (65%), Gaps = 13/186 (6%)
Query: 1 MESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60
+ +D GK+FIGG+SW T E L++YF RYG++ EA++M+D T R+RGFGFV F+DP
Sbjct: 24 VPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV 83
Query: 61 ERVIMD-KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTE 119
++V+ H +DG+ V+ K A PR + RTKKIFVGGL++ T
Sbjct: 84 DKVLTQGTHELDGKKVDPKVAFPRRAHPKMVT------------RTKKIFVGGLSAPTTL 131
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
D K YF+QFG I D ++M+D T R RGFGF+T+ SE+ VD+V FHE+N KMVE K
Sbjct: 132 EDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECK 191
Query: 180 RAVPKE 185
+A PKE
Sbjct: 192 KAQPKE 197
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 54/87 (62%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ + + YF ++G I++ +VM D T+R RGFGF+T+ +VD
Sbjct: 25 PNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVD 84
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSP 188
+VL + HEL+GK V+ K A P+ P
Sbjct: 85 KVLTQGTHELDGKKVDPKVAFPRRAHP 111
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 123/185 (66%), Gaps = 3/185 (1%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKE 185
A P++
Sbjct: 188 AEPRD 192
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD-PAVAE 61
S K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQNM 88
V M H I G+ VE K+A PRD ++
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKSQ 196
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 167 TFHELNGKMVEVKRAVPKEFSPGPSR 192
H L+G+ ++ K P+ P +R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTR 96
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 7/201 (3%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP---GRTKKIFVGGLASTVTE 119
+ + H +DGR ++ K PR Q +R R+ KIFVGG+ E
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGE 127
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
++ K+YF++FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVK
Sbjct: 128 TELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 187
Query: 180 RAVP---KEFSPGPSRSSMIG 197
RA P K +PGP S+ G
Sbjct: 188 RAEPRDSKSQTPGPPGSNQWG 208
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 123/185 (66%), Gaps = 3/185 (1%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
++GKLF+GG+ W T +E L+ YFS+YGEVV+ VIM+D+ T ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 64 IMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTES 120
+ + H +DGR ++ K PR Q R P +K KIFVGG+ E+
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E++VD+ ++ FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 181 AVPKE 185
A P++
Sbjct: 188 AEPRD 192
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFAD-PAVAERVIM 65
K+F+GGI + E L+EYF ++G V E V++ D R RGFGF+ F D +V + V M
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 66 DKHMIDGRTVEAKKAVPRDDQNM 88
H I G+ VE K+A PRD +N
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSKNQ 196
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHK 166
K+FVGGL + T+ + YF Q+G + D V+M D T + RGFGF+ + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 167 TFHELNGKMVEVKRAVPKEFSPGPSR 192
H L+G+ ++ K P+ P +R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTR 96
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 120/183 (65%), Gaps = 13/183 (7%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
D K+FIGG+SW T +E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 I-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDF 122
+ +H +D +T++ K A PR Q + RTKKIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
K+YF+QFG + D ++M+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A
Sbjct: 126 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 183 PKE 185
PKE
Sbjct: 186 PKE 188
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ T+ ++YF QFG + + +VM D T+R RGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSP 188
+VL ++ HEL+ K ++ K A P+ P
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQP 102
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 119/183 (65%), Gaps = 13/183 (7%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
D K+FIGG+SW T +E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 IMD-KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDF 122
+ +H +D +T++ K A PR Q + RTKKIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
K YF+QFG + D ++M+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 183 PKE 185
PKE
Sbjct: 186 PKE 188
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ T+ ++YF QFG + + +VM D T+R RGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSP 188
+VL ++ HEL+ K ++ K A P+ P
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQP 102
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 119/183 (65%), Gaps = 13/183 (7%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
D K+FIGG+SW T +E L+EYF ++GEV E ++MRD T R+RGFGFV F D A ++V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 I-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDF 122
+ +H +D +T++ K A PR Q + RTKKIFVGGL+ T D
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDV 125
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
K YF+QFG + D ++M+D T R RGFGF+T++SE+ V++V FHE+N KMVE K+A
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 183 PKE 185
PKE
Sbjct: 186 PKE 188
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P K+F+GGL+ T+ ++YF QFG + + +VM D T+R RGFGF+T+ + VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSP 188
+VL ++ HEL+ K ++ K A P+ P
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQP 102
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 130/198 (65%), Gaps = 14/198 (7%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E + GKLF+GG+SW+T +E L YF R+G++++ V+M++ +GR+RGFGFV FADP
Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62
Query: 62 RVIMD-KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
V+ + H +DGRT++ K PR Q P G K+F+GGL S VTE+
Sbjct: 63 HVLQNGPHTLDGRTIDPKPCNPRTLQ------------KPKKGGGYKVFLGGLPSNVTET 110
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
D + +F+++G +T+VV+MYD ++ RGFGF++++ E +V+ V ++ + LNGK VE+K+
Sbjct: 111 DLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKK 170
Query: 181 AVPKEFSPGP-SRSSMIG 197
A P++ S G S +S +G
Sbjct: 171 AEPRDGSGGQNSNNSTVG 188
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 120/179 (67%), Gaps = 16/179 (8%)
Query: 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM 65
GK+FIGG++W+T ++ L++YF ++GEV++ +MRD TGR+RGFGF+ F +P V+
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS 222
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +DG+ ++ K+A+PR++Q +T K+FVGG+ TE +F+ +
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQE----------------KTAKMFVGGVPGDCTEEEFRNF 266
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
F+QFG + D +M D +T RPRGFGF+TY++E AV+ + + + ++GK VEVKRA PK
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 88 MLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPR 147
M + ++ +SP K+F+GGL T+ + YF+QFG + D VM D T R R
Sbjct: 145 MESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSR 204
Query: 148 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
GFGF+T+ + + V+ V+ K H L+GK+++ KRA+P+E
Sbjct: 205 GFGFLTFKNPKCVNEVMSKEHH-LDGKIIDPKRAIPRE 241
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 118/181 (65%), Gaps = 16/181 (8%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG++WDT E+ L+EYF +YG V + IM+D ATGR+RGFGF+ F P+ + V+
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 67 KHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYF 126
+H++DG+ ++ K+A+PRD+Q+ +T KIFVGG+ V +F+++F
Sbjct: 220 QHILDGKVIDPKRAIPRDEQD----------------KTGKIFVGGIGPDVRPKEFEEFF 263
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEF 186
Q+GTI D +M D +T + RGFGF+TYDS +AVDRV F + + +E+KRA P+
Sbjct: 264 SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPRHM 323
Query: 187 S 187
Sbjct: 324 Q 324
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 6 GKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIM 65
GK+F+GGI D + +E+FS++G +++A +M D+ TG++RGFGFV + +RV
Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 302
Query: 66 DKHM-IDGRTVEAKKAVPR 83
+K + R +E K+A PR
Sbjct: 303 NKFIDFKDRKIEIKRAEPR 321
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 112/185 (60%), Gaps = 18/185 (9%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D + E
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL TE
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPEATEE 173
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF QFG I + + D + RGF FIT+ E+ V +VL K FH ++G E+K
Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKV 233
Query: 181 AVPKE 185
A PKE
Sbjct: 234 AQPKE 238
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
I++S K+FVGGL+ ++ D K YF +FG + D + D NT R RGFGFI
Sbjct: 63 DQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFIL 122
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+ +V++VL + H L+G++++ K+A+ + P
Sbjct: 123 FKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 157
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 19/186 (10%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
E D GK+F+GG+SWDT ++ LK+YF+++GEVV+ I D TGR+RGFGF++F D A E
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGL-ASTVTE 119
+V+ K H +DGR ++ KKA+ ++ P KKIFVGGL + TE
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAM-------------AMKKDP----VKKIFVGGLNPESPTE 167
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVK 179
++YF +FG I + + D + RGF FIT+ EE V +VL K FH ++G E+K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Query: 180 RAVPKE 185
A PKE
Sbjct: 228 VAQPKE 233
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 95 SIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY 154
I++S K+FVGGL+ ++ D K YF +FG + D + D NT R RGFGFI +
Sbjct: 58 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 117
Query: 155 DSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSP 188
+V++VL + H L+G++++ K+A+ + P
Sbjct: 118 KDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP 151
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 17/185 (9%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A E
Sbjct: 26 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVE 85
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ + +H +DG+ ++ K+A + G KK+FVGGL+ +E
Sbjct: 86 KVLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEE 129
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V ++L +H++ E+K
Sbjct: 130 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 189
Query: 181 AVPKE 185
A PKE
Sbjct: 190 AQPKE 194
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 18 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 77
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +V++VL H+L+GK+++ KRA
Sbjct: 78 FKDAASVEKVLELKEHKLDGKLIDPKRA 105
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 108/185 (58%), Gaps = 17/185 (9%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 144 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 203
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ + +H +DG+ ++ K+A + G KK+FVGGL+ +E
Sbjct: 204 KVLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEE 247
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V ++L +H++ E+K
Sbjct: 248 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 307
Query: 181 AVPKE 185
A PKE
Sbjct: 308 AQPKE 312
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +VD+VL H+L+GK+++ KRA
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRA 223
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D +
Sbjct: 22 QQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVD 81
Query: 62 RVIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ K H +DG+ ++ K+A + G KK+FVGGL+ TE
Sbjct: 82 KVLETKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPETTEE 125
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF F+TY EE V ++L FH++ E+K
Sbjct: 126 QIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKV 185
Query: 181 AVPKE 185
A PKE
Sbjct: 186 AQPKE 190
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 14 SKINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 73
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +VD+VL H+L+GK+++ KRA
Sbjct: 74 FKDAVSVDKVLETKEHKLDGKLIDPKRA 101
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 108/185 (58%), Gaps = 17/185 (9%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A +
Sbjct: 25 QQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 84
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ + +H +DG+ ++ K+A + G KK+FVGGL+ +E
Sbjct: 85 KVLELKEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEE 128
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF FITY EE V ++L +H++ E+K
Sbjct: 129 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 188
Query: 181 AVPKE 185
A PKE
Sbjct: 189 AQPKE 193
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 17 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 76
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +VD+VL H+L+GK+++ KRA
Sbjct: 77 FKDAASVDKVLELKEHKLDGKLIDPKRA 104
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 113/183 (61%), Gaps = 13/183 (7%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
+ KLFIGG+ + T +E LK +F ++G +V+ V+M+D T R+RGFGF+ ++ ++ +
Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQ 89
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H IDGR VE K+AVPR D + SP G T KK+FVG L E
Sbjct: 90 KSRPHKIDGRVVEPKRAVPRQDID-----------SPNAGATVKKLFVGALKDDHDEQSI 138
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+ YF FG I D+ ++ D T + RGF F+ +D + VD+V+ + H+LNGKMV+VK+A+
Sbjct: 139 RDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKAL 198
Query: 183 PKE 185
PK+
Sbjct: 199 PKQ 201
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 57/90 (63%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P +K+F+GGL T+ + K +F+++G I DVVVM D T+R RGFGFITY +D
Sbjct: 27 PEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMID 86
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGPS 191
H+++G++VE KRAVP++ P+
Sbjct: 87 EAQKSRPHKIDGRVVEPKRAVPRQDIDSPN 116
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 17/180 (9%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI-M 65
K+FIGG+SWDT ++ L EY SR+GEVV+ I D TGR+RGFGFV+F D A ++V+ +
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 66 DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+H +DG+ ++ K+A + G KK+FVGGL+ +E K+Y
Sbjct: 112 KEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPDTSEEQIKEY 155
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG I ++ + D T RGF FITY EE V ++L +H++ E+K A PKE
Sbjct: 156 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 121/188 (64%), Gaps = 19/188 (10%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-----DP 57
+L K+F+GG++ +T ++ ++E++S++GE+ + ++MRD T R+RGFGFV F+ D
Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDA 79
Query: 58 AVAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTV 117
A+ +R H+IDG+TV+ K+AVPRDD+N N S TK+++V G+
Sbjct: 80 AMKQR----PHIIDGKTVDPKRAVPRDDKNRSESNVS----------TKRLYVSGVREDH 125
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE 177
TE +YF ++GT+T ++ D TQ+PRGFGF+T+D ++VD+ + + H +NG +
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 178 VKRAVPKE 185
V++ + K+
Sbjct: 186 VRKGLSKD 193
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 59/88 (67%)
Query: 98 SSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
+S P +KIFVGGL S T+ ++++ QFG ITD++VM D T+R RGFGF+T+ +
Sbjct: 15 ASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK 74
Query: 158 EAVDRVLHKTFHELNGKMVEVKRAVPKE 185
VD + + H ++GK V+ KRAVP++
Sbjct: 75 TEVDAAMKQRPHIIDGKTVDPKRAVPRD 102
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 107/185 (57%), Gaps = 17/185 (9%)
Query: 2 ESDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAE 61
+ D GK+FIGG+SWDT ++ L EY SR+GEV++ I D TGR+RGFGFV+F D +
Sbjct: 22 QQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVD 81
Query: 62 RVI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTES 120
+V+ ++H +DG+ ++ K+A + G KK+FVGGL+ TE
Sbjct: 82 KVLETNEHKLDGKLIDPKRA----------------KALKGKEPPKKVFVGGLSPETTEE 125
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
K+YF FG I ++ + D T RGF F+TY EE V ++L FH++ E+K
Sbjct: 126 QIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKA 185
Query: 181 AVPKE 185
A PKE
Sbjct: 186 AQPKE 190
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S I++S K+F+GGL+ ++ D +Y +FG + D + D T R RGFGF+
Sbjct: 14 SKINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVL 73
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ +VD+VL H+L+GK+++ KRA
Sbjct: 74 FKDAVSVDKVLETNEHKLDGKLIDPKRA 101
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 110/185 (59%), Gaps = 13/185 (7%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A +
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 63 VI-MDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
+ H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 71 AMNTTPHKVDGRVVEPKRAVSREDSQ-----------RPGAHLTVKKIFVGGIKEDTEEH 119
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H + G EV++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRK 179
Query: 181 AVPKE 185
A+PK+
Sbjct: 180 ALPKQ 184
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 64/89 (71%)
Query: 102 PGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+TY + E VD
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 162 RVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
++ T H+++G++VE KRAV +E S P
Sbjct: 70 AAMNTTPHKVDGRVVEPKRAVSREDSQRP 98
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 110/179 (61%), Gaps = 11/179 (6%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG++ T EE LK ++ ++G+VV+ V+MRD AT R+RGFGF+ + + +R
Sbjct: 31 LRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQ 90
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFK 123
++ H+IDG+TVEAK+A+PR ++ N S KK+FVGGL E +
Sbjct: 91 ENRPHIIDGKTVEAKRALPRPERESRETNIS----------VKKLFVGGLKDNHDEECLR 140
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
+YF QFG + V ++ D T + RGF F+ +D +AVD+ + K H + V+VK+++
Sbjct: 141 EYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSI 199
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGLA TE + K ++ Q+G + DVVVM D T+R RGFGFITY VDR
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGPSRSS 194
H ++GK VE KRA+P+ P R S
Sbjct: 92 NRPHIIDGKTVEAKRALPR-----PERES 115
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 13/185 (7%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A +
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 63 VIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 71 AMNARPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 181 AVPKE 185
A+ K+
Sbjct: 180 ALCKQ 184
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 13/185 (7%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A +
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 63 VIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 71 AMNARPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 181 AVPKE 185
A+ K+
Sbjct: 180 ALSKQ 184
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 13/185 (7%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A +
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 63 VIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 71 AMNARPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 181 AVPKE 185
A+ K+
Sbjct: 180 ALSKQ 184
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 13/185 (7%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A +
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 63 VIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 71 AMNARPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 181 AVPKE 185
A+ K+
Sbjct: 180 ALSKQ 184
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 104/180 (57%), Gaps = 17/180 (9%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ L EY SR+GEV++ I D TGR+RGFGFV+F D ++V+
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H +DG+ ++ K+A ++ P KK+FVGGL+ TE K+Y
Sbjct: 95 KEHKLDGKLIDPKRA-------------KALQGKEPP---KKVFVGGLSPETTEEQIKQY 138
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG I ++ + D T RGF F+TY EE V ++L FH++ E+K A PKE
Sbjct: 139 FGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKE 198
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 109/179 (60%), Gaps = 11/179 (6%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
KLFIGG+ + T +E LK++F ++GE+V+ V+M+D T R+RGFGF+ ++ + +
Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
+ H +DGR VE K+AVPR + I KK+FVGG+ + E+D + Y
Sbjct: 78 RPHKVDGRVVEPKRAVPR----------TEIGRPEAGATVKKLFVGGIKEEMEENDLRDY 127
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
F Q+GT+ ++ D T++ RGF F+ +D + VD++ H++ GK ++VK+A+PK
Sbjct: 128 FKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 88 MLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPR 147
M+N + + H P +K+F+GGL T+ K++F+Q+G I DVVVM D T+R R
Sbjct: 1 MVNMDRENDHGEPE--HVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSR 58
Query: 148 GFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPK 184
GFGFITY VD + H+++G++VE KRAVP+
Sbjct: 59 GFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPR 95
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 119/203 (58%), Gaps = 21/203 (10%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-----DPAVAE 61
KLFIGG+S++T EE L+ Y+ ++G + + V+MRD A+ R+RGFGFV F+ D A+A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
R H IDGR VE K+AV R++ + PG T KK+FVGG+ E
Sbjct: 70 R----PHTIDGRVVEPKRAVAREES-----------AKPGAHVTVKKLFVGGIKEDTEEH 114
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF+++G I + ++ D + + RGF F+T+D + VD+++ + +H +NG EV++
Sbjct: 115 HLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRK 174
Query: 181 AVPKEFSPGPSRSSMIGYNNFGF 203
A+ K+ + NFGF
Sbjct: 175 ALSKQEMQDVQNTRNNRGGNFGF 197
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + Y++Q+GT+TD VVM D ++R RGFGF+T+ VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 TRPHTIDGRVVEPKRAVAREESAKP 93
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 110/185 (59%), Gaps = 13/185 (7%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A +
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDA 70
Query: 63 VIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 71 AMNARPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ YF+Q+G I + +M D + + RGF F+T+D +VD+++ + +H +NG EV++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRK 179
Query: 181 AVPKE 185
A+ K+
Sbjct: 180 ALSKQ 184
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 13/185 (7%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
L KLFIGG+S++T +E L+ +F ++G + + V+MRD T R+RGFGFV +A +
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 63 VIMDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
+ + H +DGR VE K+AV R+D PG T KKIFVGG+ E
Sbjct: 71 AMNARPHKVDGRVVEPKRAVSREDS-----------QRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
+ YF+Q+G I + +M D + + RGF F+T+D ++VD+++ + +H +NG EV++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 181 AVPKE 185
A+ K+
Sbjct: 180 ALSKQ 184
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%)
Query: 94 SSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFIT 153
S S P + +K+F+GGL+ T+ + +F+Q+GT+TD VVM D NT+R RGFGF+T
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 154 YDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
Y + E VD ++ H+++G++VE KRAV +E S P
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 21/187 (11%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-----DPAV 59
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ D A+
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 60 AERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVT 118
R H +DGR VE K+AV R+D PG T KKIFVGG+
Sbjct: 94 CAR----PHKVDGRVVEPKRAVSREDS-----------VKPGAHLTVKKIFVGGIKEDTE 138
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E + + YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EV
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 179 KRAVPKE 185
K+A+ K+
Sbjct: 199 KKALSKQ 205
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 62/94 (65%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 86 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 21/187 (11%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-----DPAV 59
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ D A+
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 60 AERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVT 118
R H +DGR VE K+AV R+D PG T KKIFVGG+
Sbjct: 94 CAR----PHKVDGRVVEPKRAVSREDS-----------VKPGAHLTVKKIFVGGIKEDTE 138
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E + + YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EV
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 179 KRAVPKE 185
K+A+ K+
Sbjct: 199 KKALSKQ 205
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 62/94 (65%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 86 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 21/187 (11%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-----DPAV 59
L KLFIGG+S++T ++ L+E+F ++G + + V+MRD T R+RGFGFV ++ D A+
Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
Query: 60 AERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVT 118
R H +DGR VE K+AV R+D PG T KKIFVGG+
Sbjct: 94 CAR----PHKVDGRVVEPKRAVSREDS-----------VKPGAHLTVKKIFVGGIKEDTE 138
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E + + YF+++G I + VM D + + RGF F+T+D + VD+++ + +H +NG EV
Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
Query: 179 KRAVPKE 185
K+A+ K+
Sbjct: 199 KKALSKQ 205
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 62/94 (65%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+++GT+TD VVM D T+R RGFGF+TY
Sbjct: 26 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 86 VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 115/185 (62%), Gaps = 21/185 (11%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-----DPAVAE 61
KLFIGG+S++T EE L+ ++ ++G++ + V+MRD A+ R+RGFGFV F+ D A++
Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69
Query: 62 RVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTES 120
R H IDGR VE K+AV R++ + PG T KK+FVGG+ E
Sbjct: 70 R----PHTIDGRVVEPKRAVAREES-----------AKPGAHVTVKKLFVGGIKEDTEEH 114
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
++YF+++G I ++ D + + RGFGF+T++ + VD+++ + +H +NG EV++
Sbjct: 115 HLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRK 174
Query: 181 AVPKE 185
A+ K+
Sbjct: 175 ALSKQ 179
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%)
Query: 106 KKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLH 165
+K+F+GGL+ TE + +++Q+G +TD VVM D ++R RGFGF+T+ VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 166 KTFHELNGKMVEVKRAVPKEFSPGP 190
H ++G++VE KRAV +E S P
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKP 93
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 113/187 (60%), Gaps = 21/187 (11%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-----DPAV 59
L KLFIGG+S++T ++ L+E+F ++G++ + V+MRD T R+RGFGFV ++ D ++
Sbjct: 26 LRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASM 85
Query: 60 AERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVT 118
+ R H +DGR VE K+AV R+D + PG T KKIFVGG+
Sbjct: 86 SAR----PHKVDGRVVEPKRAVSREDS-----------ARPGAHLTVKKIFVGGIKEDTE 130
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E + Y + +G I + VM D + + RGF F+T+D + VD+++ + +H +NG EV
Sbjct: 131 EYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 190
Query: 179 KRAVPKE 185
K+A+ K+
Sbjct: 191 KKALSKQ 197
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 61/94 (64%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+Q+G +TD VVM D T+R RGFGF+TY
Sbjct: 18 HDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC 77
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 78 VEEVDASMSARPHKVDGRVVEPKRAVSREDSARP 111
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 113/189 (59%), Gaps = 21/189 (11%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVF-----ADP 57
L KLFIGG+S++T +E L+E+F ++G + + V+MRD + R+RGFGFV + D
Sbjct: 11 EQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDA 70
Query: 58 AVAERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLAST 116
A+ R H +DGR VE K+AV R+D S PG T KKIFVGG+
Sbjct: 71 AMTAR----PHKVDGRVVEPKRAVSREDS-----------SRPGAHLTVKKIFVGGIKED 115
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMV 176
E ++YF+Q+G I + +M D + + RGF F+T++ ++VD+++ + +H +N
Sbjct: 116 TEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNS 175
Query: 177 EVKRAVPKE 185
+V++A+ K+
Sbjct: 176 QVRKALSKQ 184
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 96 IHSSPGPG---RTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI 152
+H S P + +K+F+GGL+ T+ +++F+Q+GT+TD VVM D N++R RGFGF+
Sbjct: 1 MHKSEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFV 60
Query: 153 TYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
TY S + VD + H+++G++VE KRAV +E S P
Sbjct: 61 TYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRP 98
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 113/187 (60%), Gaps = 21/187 (11%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFA-----DPAV 59
L KLFIGG+S++T ++ L+E+F ++G++ + V+MRD T R+RGFGFV ++ D ++
Sbjct: 26 LRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASM 85
Query: 60 AERVIMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVT 118
+ R H +DGR VE K+AV R+D + PG T KKIFVGG+
Sbjct: 86 SAR----PHKVDGRVVEPKRAVSREDS-----------ARPGAHLTVKKIFVGGIKEDTE 130
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEV 178
E + YF+ +G I + VM D + + RGF F+T+D + VD+++ + +H +N EV
Sbjct: 131 EYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEV 190
Query: 179 KRAVPKE 185
K+A+ K+
Sbjct: 191 KKALSKQ 197
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 61/94 (64%)
Query: 97 HSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 156
H P + +K+F+GGL+ T+ +++F+Q+G +TD VVM D T+R RGFGF+TY
Sbjct: 18 HEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC 77
Query: 157 EEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGP 190
E VD + H+++G++VE KRAV +E S P
Sbjct: 78 VEEVDASMSARPHKVDGRVVEPKRAVSREDSARP 111
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 110/183 (60%), Gaps = 13/183 (7%)
Query: 5 LGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVI 64
L KLFIGG+ + T ++ LK +F ++G +V+ V+M+D T R+RGFGF+ ++ + +
Sbjct: 23 LRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQ 82
Query: 65 MDK-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRT-KKIFVGGLASTVTESDF 122
+ H IDGRTVE K+AVPR + + SP G T KK+FVGGL E
Sbjct: 83 NARPHKIDGRTVEPKRAVPRQEID-----------SPNAGATVKKLFVGGLRDDHDEECL 131
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
++YF FG I V ++ D +T + RGF FI +D + VD+++ + H + K ++VK+A+
Sbjct: 132 REYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191
Query: 183 PKE 185
K+
Sbjct: 192 AKQ 194
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%)
Query: 85 DQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQ 144
+QN N N P + +K+F+GGL T+ K +F+++G I DVVVM D T+
Sbjct: 3 EQNDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTK 62
Query: 145 RPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPS 191
R RGFGFITY +D + H+++G+ VE KRAVP++ P+
Sbjct: 63 RSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPN 109
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 105/182 (57%), Gaps = 22/182 (12%)
Query: 4 DLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERV 63
D KLF+GG+SW+T E+ L+++F +YGE+ + D TGR+RGF F+VF + ++V
Sbjct: 54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
Query: 64 -IMDKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDF 122
D+H+I+ + V+ KKA R KIFVGGL + +++ +
Sbjct: 114 SAADEHIINSKKVDPKKA---------------------KARHGKIFVGGLTTEISDEEI 152
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAV 182
K YF QFG I +V + +D + +GF FIT+DSE+ V +L ++ GK V+VKRA
Sbjct: 153 KTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRAT 212
Query: 183 PK 184
PK
Sbjct: 213 PK 214
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 92 NTSSIHSSPGPGR---TKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRG 148
N SS + S G+ +K+FVGGL+ TE + + +F ++G I + V D T R RG
Sbjct: 39 NGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRG 98
Query: 149 FGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
F FI + + EA+D+V H +N K V+ K+A
Sbjct: 99 FAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 17/180 (9%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + KKIFVGGL+ E ++Y
Sbjct: 158 KEHKLNGKVIDPKRA-----KAMKTKEP-----------VKKIFVGGLSPDTPEEKIREY 201
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKYFDQFGTITD 134
AK +++++ + N+S HS + + K+F+GGL+ T+ D K YF +FG + D
Sbjct: 66 AKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 126 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 17/180 (9%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++GEVV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + KKIFVGGL+ E ++Y
Sbjct: 158 KEHKLNGKVIDPKRA-----KAMKTKEP-----------VKKIFVGGLSPDTPEEKIREY 201
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKYFDQFGTITD 134
AK +++++ + N+S H+ + + K+F+GGL+ T+ D K YF +FG + D
Sbjct: 66 AKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVD 125
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 126 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 13/185 (7%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
S L KLFIGG++ T E L+ +F +G + + V++ + T R+R FGFV +++ A+
Sbjct: 4 SQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADA 63
Query: 63 VIM-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGGLASTVTES 120
+ H +DG TVE K+AV R+D + PG + KK+FVGGL V E
Sbjct: 64 AMAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDVAEG 112
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
D ++F QFGT+ ++ D + + RGFGF+ + + +A D+ FH + G VEVK+
Sbjct: 113 DLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKK 172
Query: 181 AVPKE 185
AVPKE
Sbjct: 173 AVPKE 177
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 105/185 (56%), Gaps = 13/185 (7%)
Query: 3 SDLGKLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAER 62
S L KLFIGG++ T E L+ +F +G + + V++ + T R+R FGFV +++ A+
Sbjct: 4 SQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADA 63
Query: 63 VIM-DKHMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGP-GRTKKIFVGGLASTVTES 120
+ H +DG TVE K+AV R+D + PG + KK+FVGGL V E
Sbjct: 64 AMAASPHAVDGNTVELKRAVSREDS-----------ARPGAHAKVKKLFVGGLKGDVAEG 112
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
D ++F QFG + ++ D + + RGFGF+ + S +A D+ FH + G VEVK+
Sbjct: 113 DLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKK 172
Query: 181 AVPKE 185
AVPKE
Sbjct: 173 AVPKE 177
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 17/180 (9%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+FIGG+SWDT ++ LK+YFS++G+VV+ + D TGR+RGFGFV+F + ++V+
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 67 K-HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKY 125
K H ++G+ ++ K+A + M + KKIFVGGL+ E ++Y
Sbjct: 156 KEHKLNGKVIDPKRA-----KAMKTKEP-----------VKKIFVGGLSPDTPEEKIREY 199
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
F FG + + + D+ T + RGF FIT+ EE V +++ K +H + E+K A+ KE
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 77 AKKAVPRDDQNMLNRNTSSIHSSPGPGRTK--KIFVGGLASTVTESDFKKYFDQFGTITD 134
AK +++++ + N+S H+ + + K+F+GGL+ T+ D K YF +FG + D
Sbjct: 64 AKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVD 123
Query: 135 VVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRA 181
+ D T R RGFGF+ + E+VD+V+ + H+LNGK+++ KRA
Sbjct: 124 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 170
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 21/181 (11%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
L + G+ W T E+ LKEYFS +GEV+ + +D TG ++GFGFV F + +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFD 127
HMIDGR + K +P Q S P R++K+FVG +TE + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ-----------SQDEPLRSRKVFVGRCTEDMTEDELREFFS 212
Query: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEF 186
Q+G + DV + +P R F F+T+ ++ + + + G V + A PK
Sbjct: 213 QYGDVMDVFI------PKPFRAFAFVTFADDQIAQSLCGEDLI-IKGISVHISNAEPKHN 265
Query: 187 S 187
S
Sbjct: 266 S 266
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 82 PRDDQNMLNRN--TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
P+D++ ++ +S++ +T + V GL TE D K+YF FG + V V
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMI 196
D T +GFGF+ + E +V+ + H ++G+ + K K+ P RS +
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKV 193
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+G + D E+ L+E+FS+YG+V++ I + R F FV FAD +A+ + +
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE 246
Query: 67 KHMIDGRTVEAKKAVPRDDQN 87
+I G +V A P+ + N
Sbjct: 247 DLIIKGISVHISNAEPKHNSN 267
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 21/181 (11%)
Query: 8 LFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMDK 67
L + G+ W T E+ LKEYFS +GEV+ + +D TG ++GFGFV F + +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HMIDGRTVEAKKAVPRDDQNMLNRNTSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFD 127
HMIDGR + K +P Q S P R++K+FVG +TE + +++F
Sbjct: 166 HMIDGRWCDCK--LPNSKQ-----------SQDEPLRSRKVFVGRCTEDMTEDELREFFS 212
Query: 128 QFGTITDVVVMYDHNTQRP-RGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEF 186
Q+G + DV + +P R F F+T+ ++ + + + G V + A PK
Sbjct: 213 QYGDVMDVFI------PKPFRAFAFVTFADDQIAQSLCGEDLI-IKGISVHISNAEPKHN 265
Query: 187 S 187
S
Sbjct: 266 S 266
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 82 PRDDQNMLNRN--TSSIHSSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMY 139
P+D++ ++ +S++ +T + V GL TE D K+YF FG + V V
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKEFSPGPSRSSMI 196
D T +GFGF+ + E +V+ + H ++G+ + K K+ P RS +
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKV 193
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 7 KLFIGGISWDTDEERLKEYFSRYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVIMD 66
K+F+G + D E+ L+E+FS+YG+V++ I + R F FV FAD +A+ + +
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE 246
Query: 67 KHMIDGRTVEAKKAVPRDDQN 87
+I G +V A P+ + N
Sbjct: 247 DLIIKGISVHISNAEPKHNSN 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,028,096
Number of Sequences: 539616
Number of extensions: 11225637
Number of successful extensions: 77928
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 1110
Number of HSP's that attempted gapping in prelim test: 37363
Number of HSP's gapped (non-prelim): 12406
length of query: 522
length of database: 191,569,459
effective HSP length: 122
effective length of query: 400
effective length of database: 125,736,307
effective search space: 50294522800
effective search space used: 50294522800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)