BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009934
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BTW|B Chain B, Crystal Structure Of Alr0975
Length = 254
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 110/213 (51%), Gaps = 10/213 (4%)
Query: 13 SPPAIDFASSEGKQLFLEAIQGGTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAID- 71
SP I F S+EG++L L + + E F+ L F TQ AYCG+AS+ VLN+L I+
Sbjct: 41 SPNLIGFNSNEGEKLLLTS---RSREDFFPLSXQFVTQVNQAYCGVASIIXVLNSLGINA 97
Query: 72 PGRKWKGPWRWFDESMLDCCEPL------EKVKEKGISFGKLVCLAHCAGAKVEAFRTNQ 125
P P+R F + E E V ++G + +L L G KV+ +
Sbjct: 98 PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVAKQGXTLDELGRLIASYGVKVKVNHASD 157
Query: 126 STIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFK 185
+ I+DFRK + + VI +Y R Q GH SP+ Y+ D LI DV+R+K
Sbjct: 158 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXDVSRYK 217
Query: 186 YPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSR 218
YPP WV T LW+A + VD + + RGFV VS+
Sbjct: 218 YPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250
>pdb|2BTW|A Chain A, Crystal Structure Of Alr0975
pdb|2BU3|A Chain A, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
pdb|2BU3|B Chain B, Acyl-Enzyme Intermediate Between Alr0975 And Glutathione
At Ph 3.4
Length = 254
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 109/213 (51%), Gaps = 10/213 (4%)
Query: 13 SPPAIDFASSEGKQLFLEAIQGGTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAID- 71
SP I F S+EG++L L + + E F+ L F TQ AYCG+AS+ VLN+L I+
Sbjct: 41 SPNLIGFNSNEGEKLLLTS---RSREDFFPLSXQFVTQVNQAYCGVASIIXVLNSLGINA 97
Query: 72 PGRKWKGPWRWFDESMLDCCEPL------EKVKEKGISFGKLVCLAHCAGAKVEAFRTNQ 125
P P+R F + E E V +G + +L L G KV+ +
Sbjct: 98 PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGXTLDELGRLIASYGVKVKVNHASD 157
Query: 126 STIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFK 185
+ I+DFRK + + VI +Y R Q GH SP+ Y+ D LI DV+R+K
Sbjct: 158 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXDVSRYK 217
Query: 186 YPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSR 218
YPP WV T LW+A + VD + + RGFV VS+
Sbjct: 218 YPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 348 AEKVCCQGARILAGKFDSSERFYCRETCVKCLKANSDKPVTLVSGTVVNGSIEQ 401
A+K+ + AR++ F ++ F+ R + + CL S TL+ G V GSI +
Sbjct: 50 ADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITE 103
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 348 AEKVCCQGARILAGKFDSSERFYCRETCVKCLKANSDKPVTLVSGTVVNGSIEQ 401
A+K+ + AR++ F ++ F+ R + + CL S TL+ G V GSI +
Sbjct: 129 ADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITE 182
>pdb|1DBZ|A Chain A, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|C Chain C, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|D Chain D, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
Length = 357
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 302 LALKEEVLRQVQETLLFKHVVTFLSSVNSCCRSMSVLVHKNELPDIAEKVCCQGARILAG 361
+ L +L+Q Q+ ++ + LSS++ C+ ++ LV + +I+ QGA + G
Sbjct: 19 ITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQR---ANISNLTGTQGAVNIQG 75
Query: 362 KFDSSERFYCRETCVKCLKAN 382
+ E CL+++
Sbjct: 76 EDQKKLDVISNEVFSNCLRSS 96
>pdb|1D9Q|A Chain A, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|B Chain B, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|C Chain C, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|D Chain D, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|B Chain B, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|C Chain C, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|D Chain D, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
Length = 357
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 302 LALKEEVLRQVQETLLFKHVVTFLSSVNSCCRSMSVLVHKNELPDIAEKVCCQGARILAG 361
+ L +L+Q Q+ ++ + LSS++ C+ ++ LV + +I+ QGA + G
Sbjct: 19 ITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQR---ANISNLTGTQGAVNIQG 75
Query: 362 KFDSSERFYCRETCVKCLKAN 382
+ E CL+++
Sbjct: 76 EDQKKLDVISNEVFSNCLRSS 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,907,121
Number of Sequences: 62578
Number of extensions: 601377
Number of successful extensions: 1553
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1546
Number of HSP's gapped (non-prelim): 8
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)