Query 009934
Match_columns 522
No_of_seqs 139 out of 189
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 16:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bu3_A ALR0975 protein; phytoc 100.0 6.2E-81 2.1E-85 613.1 18.3 216 2-221 31-253 (254)
2 3k8u_A Putative ABC transporte 98.0 2.3E-05 8E-10 69.5 10.1 125 46-200 7-131 (156)
3 3b79_A Toxin secretion ATP-bin 97.5 0.00021 7.3E-09 60.5 7.5 114 53-200 4-117 (129)
4 3zua_A CLD, alpha-hemolysin tr 97.4 0.00053 1.8E-08 59.8 8.5 116 50-200 8-123 (142)
5 3erv_A Putative C39-like pepti 97.0 0.0048 1.6E-07 60.2 11.7 148 38-200 30-213 (236)
6 1cv8_A Staphopain; cysteine pr 72.4 17 0.00059 34.3 9.1 114 45-173 13-131 (174)
7 1x9y_A Cysteine proteinase; ha 62.4 29 0.00099 36.1 9.2 111 45-169 198-313 (367)
8 1pxv_A Cysteine protease; hydr 60.0 18 0.00062 34.4 6.7 115 45-173 22-141 (183)
9 2jml_A DNA binding domain/tran 31.3 30 0.001 27.3 2.8 56 59-114 20-77 (81)
10 3bij_A Uncharacterized protein 30.5 3.2E+02 0.011 26.3 10.5 47 106-152 35-83 (285)
11 3gp4_A Transcriptional regulat 28.1 43 0.0015 29.6 3.5 37 77-113 35-71 (142)
12 3bdk_A D-mannonate dehydratase 27.1 2.4E+02 0.0083 28.9 9.4 94 77-173 22-161 (386)
13 2vz4_A Tipal, HTH-type transcr 26.4 30 0.001 28.9 2.1 42 72-113 29-70 (108)
14 1q06_A Transcriptional regulat 25.5 33 0.0011 29.9 2.2 37 77-113 33-69 (135)
15 1r8d_A Transcription activator 24.6 35 0.0012 28.4 2.2 46 68-113 25-71 (109)
16 1tz9_A Mannonate dehydratase; 24.4 1.8E+02 0.0061 28.6 7.6 48 104-151 57-117 (367)
17 2h54_A Caspase-1; allosteric s 23.8 4.2E+02 0.014 24.2 10.7 84 106-211 69-159 (178)
18 3gpv_A Transcriptional regulat 21.2 42 0.0014 29.7 2.1 42 72-113 44-85 (148)
19 3cuq_A Vacuolar-sorting protei 20.9 75 0.0026 31.0 4.0 91 62-158 45-147 (234)
20 2zhg_A Redox-sensitive transcr 20.1 42 0.0014 30.0 1.9 41 72-113 39-79 (154)
No 1
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=100.00 E-value=6.2e-81 Score=613.11 Aligned_cols=216 Identities=37% Similarity=0.614 Sum_probs=193.0
Q ss_pred cccccccccCCCCCccccCChhhHHHHHHHHhcCCccccccccccccccCCCccccHHHHHHHHHhccCC-CCCCcCCCc
Q 009934 2 AMAGLYRRMLPSPPAIDFASSEGKQLFLEAIQGGTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAID-PGRKWKGPW 80 (522)
Q Consensus 2 ~~~sfYrR~LP~P~~I~fsS~EGk~Lf~eAl~~g~~e~ff~La~qF~TQ~npAyCGvASlamVLNAL~iD-P~r~wkgpw 80 (522)
+|++||+|+||+ ++|+|+|+||++||.+| ++|++||+|++||+||+|++||||||++||||||++| |++.|||||
T Consensus 31 ~~~~~~~~~lp~-~~i~~~S~eG~~ll~~a---~~~~~ff~L~~qf~tQ~n~ayCGlASlaMVLNALgid~P~~~wk~pw 106 (254)
T 2bu3_A 31 HMKLEQTLTLSP-NLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPY 106 (254)
T ss_dssp ---------CCT-TCEETTSHHHHHHHHHC---SBCTTHHHHHHHCCCCSSTTCHHHHHHHHHHHHTTCCC--------C
T ss_pred hhhhccccCCCh-hhccccCHHHHHHHHhC---CCchhhhcccccccccCCCCchHHHHHHHHHHhhCCCCCCccccCce
Confidence 578999999995 89999999999999998 8999999999999999999999999999999999999 999999999
Q ss_pred ccc-ccchhc-----cccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHhcCCCceEEEEeeccc
Q 009934 81 RWF-DESMLD-----CCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGA 154 (522)
Q Consensus 81 Rwf-~E~mLd-----cc~~le~Vk~~GiTL~Ela~LA~c~G~~V~~yra~~~SldeFR~~v~~~~ss~d~~vIVNY~R~a 154 (522)
||| +|+||+ ||.+++.|+++||||+||+|||+|+|++|++|++++.++++||+.|++++++++++|||||+|++
T Consensus 107 r~~Tqe~mld~~~~~~~~~~~~v~~~GiTL~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~~~~vvvny~R~~ 186 (254)
T 2bu3_A 107 RVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKE 186 (254)
T ss_dssp CCCCTTTTTC---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGG
T ss_pred eeechHhHhcccccccccChhhhccCCcCHHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCCCcEEEEEeEccc
Confidence 999 689998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhccccCCcCCceeeEEEEeCCCC
Q 009934 155 FKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSRPHR 221 (522)
Q Consensus 155 LgQtG~GHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~SgksRG~ilIs~~~~ 221 (522)
|||+|+||||||||||+++|+||||||||||||||||++++||+||+++|++||++||||+|++.++
T Consensus 187 l~q~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~~~D~~s~~~RG~~li~~~~~ 253 (254)
T 2bu3_A 187 IGQERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKTQD 253 (254)
T ss_dssp GTCSSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEEC---
T ss_pred cCCCCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHhcccccCCCcceEEEEecccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998763
No 2
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=98.03 E-value=2.3e-05 Score=69.49 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=88.7
Q ss_pred cccccCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCC
Q 009934 46 YFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQ 125 (522)
Q Consensus 46 qF~TQ~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c~G~~V~~yra~~ 125 (522)
-|..|.+..-||+|+++|+++-.|++-... .+.+.+ .+.+.|+|+.++...|+..|++++.++.+
T Consensus 7 p~~~Q~~~~dcglacLa~i~~~~g~~~s~~----------~L~~~~----~~~~~g~s~~~l~~~a~~~Gl~a~~~~~~- 71 (156)
T 3k8u_A 7 KLVPQIDTRDCGPAVLASVAKHYGSNYSIA----------YLRELS----KTNKQGTTALGIVEAAKKLGFETRSIKAD- 71 (156)
T ss_dssp CCCCCSSTTCHHHHHHHHHHHHTTCCCCHH----------HHHHHT----TCBTTBCCHHHHHHHHHHTTEEEEEEECC-
T ss_pred ceEECCCCCCHHHHHHHHHHHHhCCCCCHH----------HHHHHc----CCCCCCcCHHHHHHHHHHCCCeeEEEEee-
Confidence 456799999999999999999998653321 111111 12468999999999999999999998854
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 009934 126 STIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (522)
Q Consensus 126 ~SldeFR~~v~~~~ss~d~~vIVNY~R~aLgQtG~GHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (522)
++.|+ + ..-.-++|+...+. .|.|||--|.+++ .+.|+|.|++.- -.+.+++.++|-+.-
T Consensus 72 --~~~~~--l----~~~~lP~I~~~~~~----g~~~hfvVl~~~~--~~~v~I~DP~~g-~~~~~ls~~ef~~~w 131 (156)
T 3k8u_A 72 --MTLFD--Y----NDLTYPFIVHVIKG----KRLQHYYVVYGSQ--NNQLIIGDPDPS-VKVTRMSKERFQSEW 131 (156)
T ss_dssp --GGGGG--C----TTCCSCEEEEEEET----TEEEEEEEEEEEE--TTEEEEEECSTT-TEEEEEEHHHHHHHE
T ss_pred --hhhhh--H----hcCCCCEEEEEEec----CCCcEEEEEEEEc--CCEEEEEcCCCC-cceEEEcHHHHHhhC
Confidence 33221 1 12244777776432 1358999998887 578999999742 138999999976654
No 3
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.51 E-value=0.00021 Score=60.53 Aligned_cols=114 Identities=15% Similarity=0.081 Sum_probs=82.5
Q ss_pred CccccHHHHHHHHHhccCCCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCCCCHHHHH
Q 009934 53 PAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFR 132 (522)
Q Consensus 53 pAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c~G~~V~~yra~~~SldeFR 132 (522)
..-||+|+++|+++-.|++-... .+...+. ....|+|+.++...|+..|++++.++.+ ++++.
T Consensus 4 ~~dcgla~L~~i~~~~g~~~~~~----------~l~~~~~----~~~~g~s~~~l~~~a~~~Gl~~~~~~~~---~~~L~ 66 (129)
T 3b79_A 4 MKDPLLNSLIYVSRYYGLANSPE----------ALVNGLP----LSDGKLTPFLLPRAAERAGLVAKENRAE---LEKIS 66 (129)
T ss_dssp CCCHHHHHHHHHHHHTTCCCCHH----------HHHTTCC----CBTTBCCTTTHHHHHHHHTEEEEEEECC---GGGSC
T ss_pred cCCcHHHHHHHHHHHhCCCCCHH----------HHHhcCC----CcCCCCCHHHHHHHHHHCCCeEEEEECC---HHHCC
Confidence 45799999999999998764332 1222121 2357999999999999999999998854 33332
Q ss_pred HHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 009934 133 KYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (522)
Q Consensus 133 ~~v~~~~ss~d~~vIVNY~R~aLgQtG~GHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (522)
+ . .-+.|+... .|||--|-+++.+...++|.|++. ...+.+++.++|-+.-
T Consensus 67 ~-----l---~lP~I~~~~--------~~h~vVl~~~~~~~~~~~i~dp~~-~~g~~~~~~~ef~~~w 117 (129)
T 3b79_A 67 S-----L---ILPAILVLK--------GGDSCVLNSINMETREAEVTTLES-GMVPISIPLEDLLEQY 117 (129)
T ss_dssp G-----G---GCSEEEEEG--------GGEEEEEEEEETTTTEEEEECTTT-TTSCEEEEHHHHHHHE
T ss_pred c-----C---CCCEEEEEc--------CCCEEEEEEEcCCCceEEEEccCC-CCCcEEeeHHHHHhhC
Confidence 1 1 135666653 369999999998766899999862 3468999999986644
No 4
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=97.38 E-value=0.00053 Score=59.84 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=81.4
Q ss_pred cCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCCCCHH
Q 009934 50 QSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTID 129 (522)
Q Consensus 50 Q~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c~G~~V~~yra~~~Sld 129 (522)
|.+..-||+|+++|+++-.|++-... .+...+ .+.+.|+|+.++...|+..|++++.++. +++
T Consensus 8 ~~~~~dcglacLa~i~~~~g~~~s~~----------~L~~~~----~~~~~g~s~~~l~~aa~~~Gl~a~~~~~---~~~ 70 (142)
T 3zua_A 8 SCHKIDYGLYALEILAQYHNVSVNPE----------EIKHRF----DTDGTGLGLTSWLLAAKSLELKVKQVKK---TID 70 (142)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCCCCHH----------HHHHHT----CTTSSCCCHHHHHHHHHTTTEEEEEEEC---CHH
T ss_pred CCCCCCcHHHHHHHHHHHcCCCCCHH----------HHHHHc----CCCcCCcCHHHHHHHHHHCCCeeEEeec---CHH
Confidence 56667899999999999998653331 111111 1346899999999999999999999885 455
Q ss_pred HHHHHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 009934 130 DFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (522)
Q Consensus 130 eFR~~v~~~~ss~d~~vIVNY~R~aLgQtG~GHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (522)
++.+ -.-+.|+.. .++.||- |.+++.+.+.|+|.|++.-+ +.+++.++|-+.-
T Consensus 71 ~L~~--------l~lP~Il~~-------~~g~~~V-v~~~~~~~~~~~I~dP~~g~--~~~~s~~ef~~~w 123 (142)
T 3zua_A 71 RLNF--------ISLPALVWR-------EDGRHFI-LTKVSKEANRYLIFDLEQRN--PRVLEQSEFEALY 123 (142)
T ss_dssp HHTT--------SSSSEEECC-------TTSCCEE-EEEEETTTTEEEEEETTTTE--EEEEEHHHHHHHC
T ss_pred HHhc--------CCCCEEEEE-------cCCCEEE-EEEEeCCCCEEEEEcCCCCC--cEEecHHHHHhhC
Confidence 4432 133566632 2234665 45588777899999997532 8999999986654
No 5
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=97.00 E-value=0.0048 Score=60.21 Aligned_cols=148 Identities=20% Similarity=0.146 Sum_probs=91.6
Q ss_pred cccccccccccccCC--CccccHHHHHHHHHhccCCCCCC-----c-CC----------CccccccchhccccchHHHhh
Q 009934 38 EGFYRLISYFQTQSE--PAYCGLASLSMVLNALAIDPGRK-----W-KG----------PWRWFDESMLDCCEPLEKVKE 99 (522)
Q Consensus 38 e~ff~La~qF~TQ~n--pAyCGvASlamVLNAL~iDP~r~-----w-kg----------pwRwf~E~mLdcc~~le~Vk~ 99 (522)
+.+.-|..-|..|.. +.-|++||++|+|+..|++.... + +- |.+=|--++... .-..
T Consensus 30 ~~~~ll~Vp~~~Q~~~~~~gCe~tSlam~L~y~G~~~~~~~la~~l~~~p~~~~g~~gnP~~gFvG~p~~~-----~~~g 104 (236)
T 3erv_A 30 EKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTF-----SESG 104 (236)
T ss_dssp CCEECTTSCCCCCTTTCTTCHHHHHHHHHHHHTTCCCCHHHHHHHSCEECSEETTEECCTTTSEEBCSSCT-----TSCB
T ss_pred CceEEeCCCccccCCCCCCCCHHHHHHHHHHHcCcCCCHHHHHHHHhhCcccccCCCCCCccCccCCcccc-----CCCc
Confidence 444455555666664 68899999999999999874321 1 11 222222222110 0112
Q ss_pred cCCCHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHHHhcCCCceEEEEeec--ccc------------cc---cCCc
Q 009934 100 KGISFGKLVCLAHCAG-AKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHR--GAF------------KQ---TGTG 161 (522)
Q Consensus 100 ~GiTL~Ela~LA~c~G-~~V~~yra~~~SldeFR~~v~~~~ss~d~~vIVNY~R--~aL------------gQ---tG~G 161 (522)
.|+--..|..+|+..+ ..+ +.-...+++++.+.|. .+..|||-... +.+ |. +..+
T Consensus 105 ~giy~~~i~~~a~~y~~~~~--~dltG~sl~~L~~~I~-----~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~~~~~ 177 (236)
T 3erv_A 105 YGVYHGPLFQLAKKYLPNKA--VDLTGKSIEELYKSVK-----AGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNE 177 (236)
T ss_dssp CCCCHHHHHHHHHHHCTTTE--EECTTSCHHHHHHHHH-----TTCCEEEEEETTSSCCCGGGCEEEEETTEEEEECTTE
T ss_pred ceeecHHHHHHHHHHhhcce--eecCCCCHHHHHHHHH-----CCCeEEEEEeCCcccccccccceeecCCCceeeccCC
Confidence 4666678899998875 233 3334568888887774 45677773221 111 11 2467
Q ss_pred cccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 009934 162 HFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (522)
Q Consensus 162 HFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (522)
||--|-|||. +.|.|.|++.- ...++++.+++-++-
T Consensus 178 H~VVl~GYd~--~~vyi~DP~~g-~~~~~vs~~eFe~~w 213 (236)
T 3erv_A 178 HCVVLIGYDQ--ESVYIRDPLKD-SLDVKVPREKFEQAW 213 (236)
T ss_dssp EEEEEEEECS--SEEEEECTTSC-CSCCEEEHHHHHHHH
T ss_pred eEEEEEEEeC--CEEEEECCCCC-CccEEEcHHHHHHHH
Confidence 9999999998 69999999863 245899977754443
No 6
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=72.42 E-value=17 Score=34.34 Aligned_cols=114 Identities=13% Similarity=0.190 Sum_probs=82.7
Q ss_pred ccccccCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccc---cchHHHhhcCCCHHHHHHHHHHcCCeEEEE
Q 009934 45 SYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCC---EPLEKVKEKGISFGKLVCLAHCAGAKVEAF 121 (522)
Q Consensus 45 ~qF~TQ~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc---~~le~Vk~~GiTL~Ela~LA~c~G~~V~~y 121 (522)
.-.+||-+...|.=-+++.+||++.-- . ...-+.|+..- .+.+.....|+|.+|+-..++..|..++ +
T Consensus 13 ~I~ETQg~~pWCa~Ya~aailN~~~~~---~-----~~~A~~imr~~yPn~S~~~l~~~~~t~~e~iky~~s~g~~~~-~ 83 (174)
T 1cv8_A 13 KIRETQGNNGWCAGYTMSALLNATYNT---N-----KYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRSPQ-L 83 (174)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHHTC---C-----CCCHHHHHHHHCSSCCHHHHHHCCCCHHHHHHHHHHTTCCCE-E
T ss_pred EEeeccCCCchHHHHHHHHHHHhhhcc---C-----cCCHHHHHHHHCCCCCHHHHhhcCCCHHHHHHHHHHcCCChh-h
Confidence 346799999999999999999999621 1 12234555422 2345677899999999999999987554 4
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCceEEEEeeccccccc--CCccccccceeecCC
Q 009934 122 RTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQT--GTGHFSPIGGYHAGR 173 (522)
Q Consensus 122 ra~~~SldeFR~~v~~~~ss~d~~vIVNY~R~aLgQt--G~GHFSPIGGYh~~t 173 (522)
...-.|+++..+.+. +++.+.++-+|-. .++ -.||=--|.||-...
T Consensus 84 ~n~~ls~~eV~~~~~-----~nk~i~i~~~~ve-~~~~~~~gHAlav~Gy~~~~ 131 (174)
T 1cv8_A 84 LNRMTTYNEVDNLTK-----NNKGIAILGSRVE-SRNGMHAGHAMAVVGNAKLN 131 (174)
T ss_dssp ESSCCCHHHHHHHHH-----TTCCEEEEEEESS-CBTTBCCEEEEEEEEEEEET
T ss_pred hcCCCCHHHHHHHHh-----cCCceEEEccccc-CCCCCCCceeEEEEeeeeec
Confidence 556689999887764 5567777777763 444 378988888998754
No 7
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=62.37 E-value=29 Score=36.14 Aligned_cols=111 Identities=9% Similarity=0.146 Sum_probs=80.8
Q ss_pred ccccccCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccc---cchHHHhhcCCCHHHHHHHHHHcCCeEEEE
Q 009934 45 SYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCC---EPLEKVKEKGISFGKLVCLAHCAGAKVEAF 121 (522)
Q Consensus 45 ~qF~TQ~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc---~~le~Vk~~GiTL~Ela~LA~c~G~~V~~y 121 (522)
.-.+||-+..+|.=-+++.+||++.-- -.+.-+.|+..- .+.+.....|++++|.-..++..|..++ +
T Consensus 198 ~I~ETQg~~pWCa~Ya~aailN~~~~t--------~~~nA~~iMr~~yPN~S~~~l~~ts~~~~q~Iky~qsyG~~~~-~ 268 (367)
T 1x9y_A 198 KIREQQFDNSWCAGFSMAALLNATKNT--------DTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIH-Y 268 (367)
T ss_dssp CCCCCCSSSSCHHHHHHHHHHHHHTTC--------SCCCHHHHHHHHCTTSCTTTGGGCCCCHHHHHHHHHHTTEEEE-E
T ss_pred EeeeccCCCchHHHHHHHHHHHhhhcc--------CcCCHHHHHHHHCCCCChhHHhhcCCCHHHHHHHHHHhCcchh-h
Confidence 456799999999999999999999621 112234454321 2234566799999999999999998865 4
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCceEEEEeeccccccc--CCcccccccee
Q 009934 122 RTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQT--GTGHFSPIGGY 169 (522)
Q Consensus 122 ra~~~SldeFR~~v~~~~ss~d~~vIVNY~R~aLgQt--G~GHFSPIGGY 169 (522)
.....+.++..+.+. .++.|+|.-++..=... -.||---|.||
T Consensus 269 ~n~~ls~deVk~~id-----~Nk~I~v~~~~v~~~~n~~~~gHAlavvGy 313 (367)
T 1x9y_A 269 QEGVPSYNQVDQLTK-----DNVGIMILAQSVSQNPNDPHLGHALAVVGN 313 (367)
T ss_dssp EESCCCHHHHHHHHH-----TTCCEEEEEEETTSCSSSCCCSEEEEEEEE
T ss_pred hcCCCCHHHHHHHHh-----cCCcEEEEccccccCCCCccCceeEEEEec
Confidence 556789999887775 45688888777532333 37898888899
No 8
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=59.98 E-value=18 Score=34.43 Aligned_cols=115 Identities=8% Similarity=0.088 Sum_probs=81.3
Q ss_pred ccccccCCCccccHHHHHHHHHhccCCCCCCcCCCccccccchhccc---cchHHHhhcCCCHHHHHHHHHHcCCeEEEE
Q 009934 45 SYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCC---EPLEKVKEKGISFGKLVCLAHCAGAKVEAF 121 (522)
Q Consensus 45 ~qF~TQ~npAyCGvASlamVLNAL~iDP~r~wkgpwRwf~E~mLdcc---~~le~Vk~~GiTL~Ela~LA~c~G~~V~~y 121 (522)
.-.+||-+...|.=-+++.+||+..-- + .+.-++|++.- .+.+.....|+|.+|.-..++..|...+.
T Consensus 22 ~I~ETQg~~~WCa~Y~~aAilN~~~nt-~-------~~nA~~iMr~~yPN~s~~~l~~t~~~~~q~Iky~~s~G~~~~~- 92 (183)
T 1pxv_A 22 KIREQQFDNSWAAGFSMAALLNATKNT-D-------TYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHY- 92 (183)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHHTC-S-------CCCHHHHHHHHSTTSCTTTGGGCCBCHHHHHHHHHHTTCCCEE-
T ss_pred eeeeccCcCchHHHHHHHHHHHhhhcc-C-------cCCHHHHHHHHCCCCChhHHhhcCCCHHHHHHHHHHcCcChhH-
Confidence 345799999999999999999999621 0 11223333321 12245677999999999999999977653
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCceEEEEeeccccccc--CCccccccceeecCC
Q 009934 122 RTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQT--GTGHFSPIGGYHAGR 173 (522)
Q Consensus 122 ra~~~SldeFR~~v~~~~ss~d~~vIVNY~R~aLgQt--G~GHFSPIGGYh~~t 173 (522)
.....++++..+.+. .++.|.+.=++..=.++ -.||---|.||-...
T Consensus 93 ~nr~ls~neV~~~i~-----~Nk~I~v~~~~v~e~~~~~~~gHA~av~Gya~~~ 141 (183)
T 1pxv_A 93 QEGVPSYNQVDQLTK-----DNVGIMILAQSVSQNPNDPHLGHALAVVGNAKIN 141 (183)
T ss_dssp EESCCCHHHHHHHHH-----TTCCEEEEEECCCSSTTSCCCEEEEEEEEEEEET
T ss_pred hcCCCCHHHHHHHHh-----cCCcEEEEccccccCCCCccCceeEEEEeeeecC
Confidence 445689999888875 45577777776533455 378988888987665
No 9
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=31.26 E-value=30 Score=27.27 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHHHHHHhccC-CCCCCcCCCccccccchhccccchHHHh-hcCCCHHHHHHHHHHc
Q 009934 59 ASLSMVLNALAI-DPGRKWKGPWRWFDESMLDCCEPLEKVK-EKGISFGKLVCLAHCA 114 (522)
Q Consensus 59 ASlamVLNAL~i-DP~r~wkgpwRwf~E~mLdcc~~le~Vk-~~GiTL~Ela~LA~c~ 114 (522)
.|+.---.-.++ .|.+.-.+.+|+|++.-+..-.-+...+ +.|++++|+..++...
T Consensus 20 ~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 20 ATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp HHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHcc
Confidence 334433332233 4555532668999876665433344567 8999999999887654
No 10
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=30.53 E-value=3.2e+02 Score=26.26 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHh--cCCCceEEEEeec
Q 009934 106 KLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCS--ASEDCHVISSYHR 152 (522)
Q Consensus 106 Ela~LA~c~G~~V~~yra~~~SldeFR~~v~~~~--ss~d~~vIVNY~R 152 (522)
.++.+++..|..|.....++.+.+.+++.+.... ..+++.+++.|+.
T Consensus 35 ~~~~~L~~~Gf~v~~l~~~~~t~~~i~~al~~l~~~~~~~D~~~~yfSG 83 (285)
T 3bij_A 35 DMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKALGKGDIFMLSYSG 83 (285)
T ss_dssp HHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHHHHHHCCTTCEEEEEEES
T ss_pred HHHHHHHHcCCceEEecCCccCHHHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence 3455566779887666655678888888776543 2467899999975
No 11
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.05 E-value=43 Score=29.61 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=28.0
Q ss_pred CCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009934 77 KGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (522)
Q Consensus 77 kgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (522)
.+.+|+|++.-+..-.-+-..+..|++++++..++..
T Consensus 35 ~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 35 ESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp TTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5779999986665444445568899999999988764
No 12
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=27.08 E-value=2.4e+02 Score=28.90 Aligned_cols=94 Identities=20% Similarity=0.361 Sum_probs=50.2
Q ss_pred CCCccccccchhccccchHHHhhc-CCC-------------------HHHHHHHHHHcCCeEEEEeC-----C-------
Q 009934 77 KGPWRWFDESMLDCCEPLEKVKEK-GIS-------------------FGKLVCLAHCAGAKVEAFRT-----N------- 124 (522)
Q Consensus 77 kgpwRwf~E~mLdcc~~le~Vk~~-GiT-------------------L~Ela~LA~c~G~~V~~yra-----~------- 124 (522)
+--||||...- -+.++.+++. |.+ ..++..+++.+|+++.+... +
T Consensus 22 ~~~~rW~g~~d---~~~L~~i~q~~G~~gIe~~l~~~~~g~~w~~~~i~~lk~~l~~~GL~i~~i~s~~~~~~i~~~~~~ 98 (386)
T 3bdk_A 22 KMSFRWYGKKD---PVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLENILELKKMVEEAGLEITVIESIPVHEDIKQGKPN 98 (386)
T ss_dssp CCCCBCCCTTC---SSCHHHHHTSTTCCEEEECCCSSCSSSCCCHHHHHHHHHHHHTTTCEEEEEECCCCCHHHHTTCTT
T ss_pred hcEEEecCCCC---HHHHHHHHhcCCCCEEEeCCcccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccccccCcHH
Confidence 44588986421 2245556665 543 23455667788998876531 1
Q ss_pred -CCCHHHHHHHHHHHhcCCCceEEEEee------cccccc-cCCcc----c--cccceeecCC
Q 009934 125 -QSTIDDFRKYIIRCSASEDCHVISSYH------RGAFKQ-TGTGH----F--SPIGGYHAGR 173 (522)
Q Consensus 125 -~~SldeFR~~v~~~~ss~d~~vIVNY~------R~aLgQ-tG~GH----F--SPIGGYh~~t 173 (522)
+..++.|++.|..+..-.-..|..||. |..+.- ..+|. | +++++||++.
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~~nf~p~~~w~rt~~~~~~~~G~~~~~f~~~~~~~~d~~~ 161 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVCYNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVA 161 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEECCCSSCSCCCSEEEEECTTSCEEEEEEGGGGSSCCC--
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCcccccccccccccccCCCccccccchhhhhcccchh
Confidence 124566777777654333335555765 544421 12332 2 5778887544
No 13
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=26.45 E-value=30 Score=28.86 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009934 72 PGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (522)
Q Consensus 72 P~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (522)
|.+.-.+.+|+|++.-+..-.-+...++.|++++++..++..
T Consensus 29 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 29 PSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 444235678999876654333334457899999999998864
No 14
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=25.53 E-value=33 Score=29.94 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=27.4
Q ss_pred CCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009934 77 KGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (522)
Q Consensus 77 kgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (522)
.+.+|+|++.-+..-.-+...+..|++++|+..++..
T Consensus 33 ~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 33 ENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp TTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 5679999986665333334467899999999998864
No 15
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=24.60 E-value=35 Score=28.40 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=30.2
Q ss_pred ccC-CCCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009934 68 LAI-DPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (522)
Q Consensus 68 L~i-DP~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (522)
.|. .|.+.-.+.+|+|++.-+..-.-+...+..|++++++..++..
T Consensus 25 ~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 25 IELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp TTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred CCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 344 3444235678999876554333334457889999999998864
No 16
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=24.44 E-value=1.8e+02 Score=28.57 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCC-------------CHHHHHHHHHHHhcCCCceEEEEee
Q 009934 104 FGKLVCLAHCAGAKVEAFRTNQS-------------TIDDFRKYIIRCSASEDCHVISSYH 151 (522)
Q Consensus 104 L~Ela~LA~c~G~~V~~yra~~~-------------SldeFR~~v~~~~ss~d~~vIVNY~ 151 (522)
+.++..+++.+|+++..+..... .++.+++.+..+..-.-..|++||.
T Consensus 57 ~~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~n~~ 117 (367)
T 1tz9_A 57 IQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFK 117 (367)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHCCCeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34666777889999887653221 2455666666554333345666553
No 17
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=23.80 E-value=4.2e+02 Score=24.22 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHhc-----CCCceEEEEeecccccccCCccccccceeecCCCeEEEEe
Q 009934 106 KLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSA-----SEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILD 180 (522)
Q Consensus 106 Ela~LA~c~G~~V~~yra~~~SldeFR~~v~~~~s-----s~d~~vIVNY~R~aLgQtG~GHFSPIGGYh~~tD~VLILD 180 (522)
.+..+.+..|.+|+++. +.+.+++++.|++... +.++.+++=.+.+.- |+ |-|-|..
T Consensus 69 ~L~~~f~~LgF~V~~~~--dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~~-----g~---i~g~D~~-------- 130 (178)
T 2h54_A 69 GMTMLLQNLGYSVDVKK--NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIR-----EG---ICGKKHS-------- 130 (178)
T ss_dssp HHHHHHHHTTCEEEEEE--SCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBCS-----SC---EECTTCC--------
T ss_pred HHHHHHHHCCCEEEEec--CCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCCC-----Ce---EEeecCC--------
Confidence 56777888999998776 6899999999998542 345555554433221 22 2222221
Q ss_pred cCCCCCCceeeehHHHHHhccccC--CcCCcee
Q 009934 181 VARFKYPPHWVPLTLLWEAMDRVD--DATGQRR 211 (522)
Q Consensus 181 VARfKYPP~WVpl~~L~eAM~tiD--~~SgksR 211 (522)
.+++-.|+++++++.++.-- .-.||+.
T Consensus 131 ----~~~~~~v~l~~I~~~f~~~~CpsL~gKPK 159 (178)
T 2h54_A 131 ----EQVPDILQLNAIFNMLNTKNCPSLKDKPK 159 (178)
T ss_dssp ----SSSCCEECHHHHHHHHSTTTCGGGTTSCE
T ss_pred ----cccCcEEEHHHHHHHHhhcCChhhcCCce
Confidence 24566899999999998643 1235655
No 18
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.17 E-value=42 Score=29.74 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009934 72 PGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (522)
Q Consensus 72 P~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (522)
|...-.+.+|+|++.-+..-.-+-..+..|++++++..++..
T Consensus 44 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 44 FLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp TCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 333335779999986665444444567899999999998864
No 19
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.92 E-value=75 Score=31.04 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=56.9
Q ss_pred HHHHHhccCCCCCCcCCCc-------ccccc---chhccccchHHHhhcC-CCHHHHHHHH-HHcCCeEEEEeCCCCCHH
Q 009934 62 SMVLNALAIDPGRKWKGPW-------RWFDE---SMLDCCEPLEKVKEKG-ISFGKLVCLA-HCAGAKVEAFRTNQSTID 129 (522)
Q Consensus 62 amVLNAL~iDP~r~wkgpw-------Rwf~E---~mLdcc~~le~Vk~~G-iTL~Ela~LA-~c~G~~V~~yra~~~Sld 129 (522)
.-.+.++||||-..-||-| .||-| .+.+.|... .-..-| |+|.++.|.. +..|... ...|.|
T Consensus 45 ~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~t-r~~nGGli~L~el~~~~~r~Rg~~~-----~~IS~d 118 (234)
T 3cuq_A 45 QDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLAL-KHRNGGLITLEELHQQVLKGRGKFA-----QDVSQD 118 (234)
T ss_dssp HHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHSSEEEHHHHHHHHHHTTTTCC-----SSCCHH
T ss_pred HHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHHH-HHhcCCeeEHHHHHHHHHHhcCCcc-----CccCHH
Confidence 3457899999976667666 45555 555667542 122223 7999999988 4556511 468999
Q ss_pred HHHHHHHHHhcCCCceEEEEeeccccccc
Q 009934 130 DFRKYIIRCSASEDCHVISSYHRGAFKQT 158 (522)
Q Consensus 130 eFR~~v~~~~ss~d~~vIVNY~R~aLgQt 158 (522)
+..+.++....=.+.+-|+.|..+.+-|.
T Consensus 119 Di~rAik~L~~LG~g~~v~~~~g~~~VqS 147 (234)
T 3cuq_A 119 DLIRAIKKLKALGTGFGIIPVGGTYLIQS 147 (234)
T ss_dssp HHHHHHHHHGGGBTTCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEECCEEEEEe
Confidence 99999986422123366777664444444
No 20
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=20.09 E-value=42 Score=30.04 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=28.9
Q ss_pred CCCCcCCCccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 009934 72 PGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (522)
Q Consensus 72 P~r~wkgpwRwf~E~mLdcc~~le~Vk~~GiTL~Ela~LA~c 113 (522)
|.+. .+.+|+|++.-+..-.-+...+..|++++++..++..
T Consensus 39 p~r~-~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 79 (154)
T 2zhg_A 39 SIRN-SGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGV 79 (154)
T ss_dssp CEEC-TTSCEEBCTTHHHHHHHHHHHHHHTCCHHHHHHHHCC
T ss_pred cccC-CCCCEEeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 5444 4668999986655333334567899999999998864
Done!