BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009935
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 129/328 (39%), Gaps = 77/328 (23%)
Query: 181 EAEMVMFGAIDELLSKTGVKAKDIGILV-VNCSLFCPTPSLSAMIVNHYKLRGNITSYNL 239
EA+ + I L + A DI +++ V+C+ F PSL+A ++N +
Sbjct: 83 EAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTRQIPI 141
Query: 240 GGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSM--LVSNCLFRMGG 297
+GC+AG +I+ A +P + AL+V+ E +L Y D + L+ N LF G
Sbjct: 142 AQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSL-CYQPTDLGVGSLLCNGLFGDGI 200
Query: 298 AAILLXXXXXXXXXXKYQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAG 357
AA + VR G GV L ++
Sbjct: 201 AAAV------------------VRGRGG------------------TGVRLERN------ 218
Query: 358 EALKTNITTLGPIVLPMSEQLLF-------FATLVAKKVFKMKIKPYIPDFK-LAFEH-- 407
G ++P +E + F L+ K+V ++P P K LA EH
Sbjct: 219 ----------GSYLIPKTEDWIMYDVKATGFHFLLDKRV-PATMEPLAPALKELAGEHGW 267
Query: 408 -------FCIHAGGRAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK 460
+ +HAGG +LD+L LE+ SR TL +GN +S+ + L +
Sbjct: 268 DASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDE 327
Query: 461 GRMRKGDRTWQIAFGSGFKCNSAV--WQ 486
G + +G R FG G ++ WQ
Sbjct: 328 GGVEEGARGLLAGFGPGITAEMSLGCWQ 355
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 120/291 (41%), Gaps = 30/291 (10%)
Query: 200 KAKDIGILVVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQ 259
+A +IG+LV+ S P + IV L +I+ + MGC+A + ++ A ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 260 VHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHT 319
HP ALVV +E ++N F +D + +V + LF G AA+++ +++
Sbjct: 191 AHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 320 VRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLL 379
VR+ F + D G+ L + + E + + V P+ ++L
Sbjct: 249 VRSS-----------FSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEML 297
Query: 380 FFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTL 439
+ L I D L + IH GG ++++ ++L +S S L
Sbjct: 298 WDNGL------------QISDIDL----WAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 341
Query: 440 YRFGNTSSSSLWYELAYSEAKGRMRKGDRTW-QIAFGSGFKCNSAVWQALR 489
RFGN S SL + L + K T AFG G ++ +R
Sbjct: 342 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 120/291 (41%), Gaps = 30/291 (10%)
Query: 200 KAKDIGILVVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQ 259
+A +IG+LV+ S P + IV L +I+ + MGC+A + ++ A ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 260 VHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHT 319
HP ALVV +E ++N F +D + +V + LF G AA+++ +++
Sbjct: 191 AHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 320 VRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLL 379
VR+ F + D G+ L + + E + + V P+ ++L
Sbjct: 249 VRSS-----------FSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEML 297
Query: 380 FFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTL 439
+ L I D L + IH GG ++++ ++L +S S L
Sbjct: 298 WDNGL------------QISDIDL----WAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 341
Query: 440 YRFGNTSSSSLWYELAYSEAKGRMRKGDRTW-QIAFGSGFKCNSAVWQALR 489
RFGN S SL + L + K T AFG G ++ +R
Sbjct: 342 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 153/360 (42%), Gaps = 72/360 (20%)
Query: 148 KKILERSGL-GQHTYFPEAVLRVPPNPCM--AEARNEAEMVMFGAIDELLSKTGVKA-KD 203
++I ER+ + +H Y E +L+ PN C A + + E +M + + + KA K+
Sbjct: 58 QRICERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKE 117
Query: 204 IGILVVNCS--LFCPT-----PSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQ 256
G + + +FC T P + ++ L ++ Y + GC AG + LAK
Sbjct: 118 WGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKD 177
Query: 257 LLQVHPNSYALVVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXKY 314
L + + ++ L+V EN ++ + ++ M LV LF G AAI++
Sbjct: 178 LAENNKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIII------------ 225
Query: 315 QLIHTVRTHKGAD--DKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVL 372
G+D + N +F+ VS + L+ + A+ + +G
Sbjct: 226 ----------GSDPVPEVENPLFEI--------VSTDQQLVPNSHGAIGGLLREVG---- 263
Query: 373 PMSEQLLFF-----ATLVAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEK 423
L F+ ++++ + K + P D+ F + H GGRA+LD++E+
Sbjct: 264 -----LTFYLNKSVPDIISQNINDALSKAFDPLGISDYNSIF--WIAHPGGRAILDQVEE 316
Query: 424 NLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+ L M+ +R L +GN SS+ +++ + K + G +T W + FG G
Sbjct: 317 KVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKKS-LEAGLKTTGEGLDWGVLFGFG 375
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 145/371 (39%), Gaps = 50/371 (13%)
Query: 148 KKILERSGLGQ-HTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKAKDI 204
K+I E++ + + + E L+ P C MA + N + ++ + L + VKA D
Sbjct: 62 KRICEKTAIKKRYLALTEDYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEAAVKAIDE 121
Query: 205 GIL---VVNCSLFCPT-----PSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQ 256
L + +FC T P +V L ++ Y L G +AG + LAK
Sbjct: 122 WGLPKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKD 181
Query: 257 LLQVHPNSYALVVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXKY 314
L + + S L+V E + ++ N+ + LV+ LF G AA+++
Sbjct: 182 LAENNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGSG--------- 232
Query: 315 QLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPM 374
H + + V S + ++ +A+K ++ G
Sbjct: 233 -------PHLAVERPIFEIV------------STDQTILPDTEKAMKLHLREGGLTFQLH 273
Query: 375 SEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEP 434
+ L A + K I D+ F + +H GGRA+LD++E+ L L E +
Sbjct: 274 RDVPLMVAKNIENAAEKALSPLGITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRA 331
Query: 435 SRMTLYRFGNTSSSSLWYEL----AYSEAKGRMRKG---DRTWQIAFGSGFKCNSAVWQA 487
SR L +GN S+ + + + S A+G+ G D FG G + V ++
Sbjct: 332 SRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRS 391
Query: 488 LRTINPAKEKN 498
+R N
Sbjct: 392 VRVTAAVANGN 402
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 118/304 (38%), Gaps = 38/304 (12%)
Query: 198 GVKAKDIGILVVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQL 257
G A DI LVV + P + +V LR ++ L GC AG ++ LAK L
Sbjct: 142 GRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDL 201
Query: 258 LQVHPNSYALVVSMENITLNWYFGND----RSMLVSNCLFRMGGAAILLXXXXXXXXXXK 313
+ + LVV+ E +TL ++ G D R++LV LF G AA+++
Sbjct: 202 AENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQG-LFGDGAAAVIVGADADDVERPL 259
Query: 314 YQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLP 373
++++ +T D N F +R+ L + + + G+ ++ + +
Sbjct: 260 FEIVSAAQTIIPESDHALNMRFTE----RRLDGVLGRQVPGLIGDNVERCLLDM------ 309
Query: 374 MSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHME 433
L +F + +H G ++D+++ L L +
Sbjct: 310 FGPLLGGDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLA 352
Query: 434 PSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTW-----QIAFGSGFKCNSAVWQAL 488
SR L +GN S +++ + L + + W +AFG G ++ + A
Sbjct: 353 ASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHAT 412
Query: 489 RTIN 492
+N
Sbjct: 413 SHVN 416
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 131/343 (38%), Gaps = 59/343 (17%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + GC AG + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVL 187
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 324
VV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 325 GADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL 384
+ + + T L KD+ +
Sbjct: 248 PDSEGAIDGHLREAGLT----FHLLKDVPGI----------------------------- 274
Query: 385 VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLY 440
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 275 VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 441 RFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+GN SS+ + + L K + G +T W + FG G
Sbjct: 333 EYGNMSSACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 374
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 116/299 (38%), Gaps = 38/299 (12%)
Query: 198 GVKAKDIGILVVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQL 257
G A DI LVV + P + +V LR ++ L GC AG ++ LAK L
Sbjct: 112 GRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDL 171
Query: 258 LQVHPNSYALVVSMENITLNWYFGND----RSMLVSNCLFRMGGAAILLXXXXXXXXXXK 313
+ + LVV+ E +TL ++ G D R++LV LF G AA+++
Sbjct: 172 AENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQG-LFGDGAAAVIVGADADDVERPL 229
Query: 314 YQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLP 373
++++ +T D N F +R+ L + + + G+ ++ + +
Sbjct: 230 FEIVSAAQTIIPESDHALNMRFTE----RRLDGVLGRQVPGLIGDNVERCLLDM------ 279
Query: 374 MSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHME 433
L +F + +H G ++D+++ L L +
Sbjct: 280 FGPLLGGDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLA 322
Query: 434 PSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTW-----QIAFGSGFKCNSAVWQA 487
SR L +GN S +++ + L + + W +AFG G ++ + A
Sbjct: 323 ASRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 129/341 (37%), Gaps = 55/341 (16%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 72 RYMYLTEEILKENPNVCEYMAPSLDARQAMLAMEVPRLGKEAAVKAIKEWGQPKSKITHL 131
Query: 208 VVNCSLFCPT-PSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYA 266
+V CS P P + LR + + GC AG + LAK L + + +
Sbjct: 132 IV-CSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAENNKGARV 190
Query: 267 LVVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTH 323
LVV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 191 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 250
Query: 324 KGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFAT 383
+ + + L+ L + + NIT
Sbjct: 251 APDSEGAIDGHLRE--------AGLTFHLKGAVPDIVSKNIT------------------ 284
Query: 384 LVAKKVFKMKIKPY-IPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLYRF 442
K +P I D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 285 ----KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 338
Query: 443 GNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
GN SS+ + + L K + G +T W + FG G
Sbjct: 339 GNMSSACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 378
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 147/363 (40%), Gaps = 59/363 (16%)
Query: 140 SEENLAFQKK---ILERSGLGQ-HTYFPEAVLRVPPN--PCMAEARNEAEMVMFGAIDEL 193
SE A +KK I ++S + + + + E +L PN MA + N + ++ + +L
Sbjct: 633 SEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKL 692
Query: 194 LSKTGVKA-KDIGILVVNCS--LFCPT-----PSLSAMIVNHYKLRGNITSYNLGGMGCS 245
+ +KA K+ G + +FC T P + N L ++ L GC
Sbjct: 693 GKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCY 752
Query: 246 AGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLX 303
AG + AK L + + + LVV E + + ++ ++ LV LF G AA+++
Sbjct: 753 AGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVG 812
Query: 304 XXXXXXXXXK-YQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKT 362
+QL+ +T N + + VG++ L
Sbjct: 813 SDPDISIERPLFQLVSAAQTF------IPNSAGAIAGNLREVGLTFH----------LWP 856
Query: 363 NITTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPY-IPDFKLAFEHFCIHAGGRAVLDEL 421
N+ TL +SE + +K P I D+ F + H GG A+LD +
Sbjct: 857 NVPTL------ISENV--------EKCLTQAFDPLGISDWNSLF--WIAHPGGPAILDAV 900
Query: 422 EKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRT-------WQIAF 474
E L L + +E +R L +GN SS+ + + L E + + KG+R W + F
Sbjct: 901 EAKLNLDKKKLEATRHVLSEYGNMSSACVLFIL--DEMRKKSLKGERATTGEGLDWGVLF 958
Query: 475 GSG 477
G G
Sbjct: 959 GFG 961
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 123/284 (43%), Gaps = 34/284 (11%)
Query: 198 GVKAKDIGILVVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQL 257
G DI +V S P ++ +++ L ++ +L MGC AGL S+ A L
Sbjct: 111 GGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASL 170
Query: 258 LQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLI 317
+ P + LVV E +L++ + +V++ +F G AA ++ Y+++
Sbjct: 171 AKASPRNRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVM 230
Query: 318 HTV-RTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSE 376
++ R+ ++ V+ E + +G+ S + V G ++ + TL + +
Sbjct: 231 CSINRSFPNTENA---MVWDLEKEGWNLGLDAS--IPIVIGSGIEAFVDTL------LDK 279
Query: 377 QLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSR 436
L +T ++ K + F IH GG+++L +E +L + + +
Sbjct: 280 AKLQTSTAISAKDCE----------------FLIHTGGKSILMNIENSLGIDPKQTKNTW 323
Query: 437 MTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQI--AFGSGF 478
+ +GN SS+S+ + + ++ R K T+ I AFG G
Sbjct: 324 DVYHAYGNMSSASVIFVMDHA----RKSKSLPTYSISLAFGPGL 363
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 131/348 (37%), Gaps = 69/348 (19%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHTVRTHKG 325
VV E + + +D + LV LF G AA+++ G
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 225
Query: 326 ADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL- 384
+D + K + + A + G I L + E L F L
Sbjct: 226 SDPVP----------------EIEKPIFEMVWTAQTIAPDSEGAIDLHLREAGLTFHLLK 269
Query: 385 -----VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPS 435
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +
Sbjct: 270 DVPGIVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNAT 327
Query: 436 RMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
R L +GN SS+ + + L K + G +T W + FG G
Sbjct: 328 REVLSEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 134/347 (38%), Gaps = 67/347 (19%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRT-- 322
VV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 323 --HKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLF 380
+GA D V RE + L KD+ +
Sbjct: 248 PDSEGAID-----VHLREAG---LTFHLLKDVPGI------------------------- 274
Query: 381 FATLVAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSR 436
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +R
Sbjct: 275 ----VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATR 328
Query: 437 MTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
L +GN SS+ + + L K + G +T W + FG G
Sbjct: 329 EVLSEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 59/343 (17%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 324
VV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 325 GADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL 384
+ + + T L KD+ +
Sbjct: 248 PDSEGAIDAHLREAGLT----FHLLKDVPGI----------------------------- 274
Query: 385 VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLY 440
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 275 VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 441 RFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+GN SS+ + + L K + G +T W + FG G
Sbjct: 333 EYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 59/343 (17%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVL 187
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 324
VV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 325 GADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL 384
+ + + T L KD+ +
Sbjct: 248 PDSEGAIDGHLREAGLT----FHLLKDVPGI----------------------------- 274
Query: 385 VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLY 440
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 275 VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 441 RFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+GN SS+ + + L K + G +T W + FG G
Sbjct: 333 EYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 59/343 (17%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVL 187
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 324
VV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 325 GADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL 384
+ + + T L KD+ +
Sbjct: 248 PDSEGAIDGHLREAGLT----FHLLKDVPGI----------------------------- 274
Query: 385 VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLY 440
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 275 VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 441 RFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+GN SS+ + + L K + G +T W + FG G
Sbjct: 333 EYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 130/348 (37%), Gaps = 69/348 (19%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHTVRTHKG 325
VV E + + +D + LV LF G AA+++ G
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIV----------------------G 225
Query: 326 ADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL- 384
+D + K + + A + G I + E L F L
Sbjct: 226 SDPVP----------------EIEKPIFEMVWTAQTIAPDSEGAIDFHLREAGLTFHLLK 269
Query: 385 -----VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPS 435
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +
Sbjct: 270 DVPGIVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNAT 327
Query: 436 RMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
R L +GN SS+ + + L K + G +T W + FG G
Sbjct: 328 REVLSEYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 59/343 (17%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 67 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 126
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 127 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 186
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 324
VV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 187 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 246
Query: 325 GADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL 384
+ + + T L KD+ +
Sbjct: 247 PDSEGAIDGHLREAGLT----FHLLKDVPGI----------------------------- 273
Query: 385 VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLY 440
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 274 VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLS 331
Query: 441 RFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+GN SS+ + + L K + G +T W + FG G
Sbjct: 332 EYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 373
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 59/343 (17%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 324
VV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 325 GADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL 384
+ + + T L KD+ +
Sbjct: 248 PDSEGAIDGHLREAGLT----FHLLKDVPGI----------------------------- 274
Query: 385 VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLY 440
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 275 VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 441 RFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+GN SS+ + + L K + G +T W + FG G
Sbjct: 333 EYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 147/378 (38%), Gaps = 83/378 (21%)
Query: 148 KKILERSGLGQ-HTYFPEAVLRVPPNPCM------AEARN-----EAEMVMFGAIDELLS 195
K+I ERS + Q + Y E +L+ P+ C +AR E + A ++ +
Sbjct: 63 KRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQ 122
Query: 196 KTGVKAKDIGILVVNCSLFCPT--PSLSAMIVNHYKLRGNITSYNLGGM---GCSAGLIS 250
+ G I L+ FC T P L KL G S G+ GC AG
Sbjct: 123 EWGQSKSGITHLI-----FCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTV 177
Query: 251 IDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXX 308
+ +AK L + + + LV+ E + + ++ + LV LF G +A+++
Sbjct: 178 LRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIV------ 231
Query: 309 XXXXKYQLIHTVRTHKGAD------DKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKT 362
GAD C+ V+ T + V S+ A+ G+ +
Sbjct: 232 ----------------GADPIPQVEKACFEIVW-----TAQTVVPNSEG--AIGGKVREV 268
Query: 363 NITTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPY----IPDFKLAFEHFCIHAGGRAVL 418
+T +P L++ + ++ + I D+ F + +H GGRA+L
Sbjct: 269 GLTFQLKGAVP---------DLISANIENCMVEAFSQFKISDWNKLF--WVVHPGGRAIL 317
Query: 419 DELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQ------- 471
D +E L L + P+R + +GN SS+ + + L + K ++ G T
Sbjct: 318 DRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTR-KASLQNGCSTTGEGLEMGV 376
Query: 472 -IAFGSGFKCNSAVWQAL 488
FG G + V +++
Sbjct: 377 LFGFGPGLTIETVVLKSV 394
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 147/378 (38%), Gaps = 83/378 (21%)
Query: 148 KKILERSGLGQ-HTYFPEAVLRVPPNPCM------AEARN-----EAEMVMFGAIDELLS 195
K+I ERS + Q + Y E +L+ P+ C +AR E + A ++ +
Sbjct: 79 KRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQ 138
Query: 196 KTGVKAKDIGILVVNCSLFCPT--PSLSAMIVNHYKLRGNITSYNLGGM---GCSAGLIS 250
+ G I L+ FC T P L KL G S G+ GC AG
Sbjct: 139 EWGQSKSGITHLI-----FCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTV 193
Query: 251 IDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXX 308
+ +AK L + + + LV+ E + + ++ + LV LF G +A+++
Sbjct: 194 LRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIV------ 247
Query: 309 XXXXKYQLIHTVRTHKGAD------DKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKT 362
GAD C+ V+ T + V S+ A+ G+ +
Sbjct: 248 ----------------GADPIPQVEKACFEIVW-----TAQTVVPNSEG--AIGGKVREV 284
Query: 363 NITTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPY----IPDFKLAFEHFCIHAGGRAVL 418
+T +P L++ + ++ + I D+ F + +H GGRA+L
Sbjct: 285 GLTFQLKGAVP---------DLISANIENCMVEAFSQFKISDWNKLF--WVVHPGGRAIL 333
Query: 419 DELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQ------- 471
D +E L L + P+R + +GN SS+ + + L + K ++ G T
Sbjct: 334 DRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTR-KASLQNGCSTTGEGLEMGV 392
Query: 472 -IAFGSGFKCNSAVWQAL 488
FG G + V +++
Sbjct: 393 LFGFGPGLTIETVVLKSV 410
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 384 LVAKKVFKMKIKP----YIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTL 439
L++K + K+ +P + P + F + +H GG A+LD++E L LS M+ SR L
Sbjct: 287 LISKNIDKVLAEPLEYVHFPSYNDMF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVL 344
Query: 440 YRFGNTSSSSLWYEL 454
+GN SS+S+ + L
Sbjct: 345 ASYGNMSSASVLFVL 359
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 129/343 (37%), Gaps = 59/343 (17%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 67 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 126
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 127 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 186
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 324
VV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 187 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 246
Query: 325 GADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL 384
+ + + T L KD+ +
Sbjct: 247 PDSEGAIDGHLREAGLT----FHLLKDVPGI----------------------------- 273
Query: 385 VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLY 440
V+K + K ++ + P D+ F + GG A+LD++E+ L L M +R L
Sbjct: 274 VSKNITKALVEAFEPLGISDYNSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVLS 331
Query: 441 RFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+GN SS+ + + L K + G +T W + FG G
Sbjct: 332 EYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 373
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 129/343 (37%), Gaps = 59/343 (17%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 66 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 125
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 126 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 185
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 324
VV E + + +D + LV LF G AA+++ ++++ T +T
Sbjct: 186 VVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 245
Query: 325 GADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL 384
+ + + T L KD+ +
Sbjct: 246 PDSEGAIDGHLREAGLT----FHLLKDVPGI----------------------------- 272
Query: 385 VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLY 440
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 273 VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLS 330
Query: 441 RFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+G SS+ + + L K + G +T W + FG G
Sbjct: 331 EYGAMSSACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 372
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 129/343 (37%), Gaps = 59/343 (17%)
Query: 158 QHTYFPEAVLRVPPNPC--MAEARNEAEMVMFGAIDELLSKTGVKA--------KDIGIL 207
++ Y E +L+ PN C MA + + + ++ + L + VKA I L
Sbjct: 68 RYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHL 127
Query: 208 VVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYAL 267
+V + P + LR + Y + G AG + LAK L + + + L
Sbjct: 128 IVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVL 187
Query: 268 VVSMENITLNWYFGNDRSM--LVSNCLFRMGGAAILLXXXXXXXXXXK-YQLIHTVRTHK 324
VV E + + +D + LV L G AA+++ ++++ T +T
Sbjct: 188 VVCSEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA 247
Query: 325 GADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATL 384
+ + + T L KD+ +
Sbjct: 248 PDSEGAIDGHLREAGLT----FHLLKDVPGI----------------------------- 274
Query: 385 VAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLY 440
V+K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 275 VSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLS 332
Query: 441 RFGNTSSSSLWYELAYSEAKGRMRKGDRT------WQIAFGSG 477
+GN SS+ + + L K + G +T W + FG G
Sbjct: 333 EYGNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 408 FCIHAGGRAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWY------ELAYSEAKG 461
+ +H GG A+LD++E LEL + + SR L +GN SS+S+ + E + K
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKS 377
Query: 462 RMRKGDR-TWQIAFGSGFKCNSAVWQAL 488
+G + I FG G + + +AL
Sbjct: 378 TFGEGSEWGFLIGFGPGLTVETLLLRAL 405
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 411 HAGGRAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELA----YSEAKGRMRKG 466
H GGRA+LD++E L+L +R L+ +GN S+S+ Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 467 DR-TWQI--AFGSGFKCNSAVWQAL 488
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 411 HAGGRAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELA----YSEAKGRMRKG 466
H GGRA+LD++E L+L +R L+ +GN S+S+ Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 467 DR-TWQI--AFGSGFKCNSAVWQAL 488
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 118/309 (38%), Gaps = 42/309 (13%)
Query: 178 ARNEAEMVM-FGAIDELLSKTGVKAKDIGILVV-NCSLFCPTPSLSAMIVNHYKLRGNIT 235
A NE M F A + G++ IG++VV S PS + I + ++G
Sbjct: 46 APNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG-CP 104
Query: 236 SYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRM 295
++++ C+ ++ +A Q ++ YALVV ++ DR ++ +F
Sbjct: 105 AFDVAA-ACAGFTYALSVADQYVKSGAVKYALVVG-SDVLARTCDPTDRGTII---IFGD 159
Query: 296 GGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAV 355
G A +L + TH AD + D RV S L
Sbjct: 160 GAGAAVLAASEEPGI---------ISTHLHADGSYGELLTLPNAD--RVNPENSIHLTMA 208
Query: 356 AGEALKTNITTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGR 415
E K +T L IV TL A + + ++ +P H
Sbjct: 209 GNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP-----------HQANL 248
Query: 416 AVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQIAFG 475
++ K L +S M+ +TL R GNTS++S+ L + GR++ G AFG
Sbjct: 249 RIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFG 305
Query: 476 SGFKCNSAV 484
GF SA+
Sbjct: 306 GGFTWGSAL 314
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 357 GEALKTNITTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRA 416
G ++K + G V + +++ ATL A + K + P D +L F H
Sbjct: 200 GTSMKNRLYMNGREVFKFAVRVMNTATLEA--IEKAGLTP--EDIRL----FVPHQANLR 251
Query: 417 VLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQIAFGS 476
++D + L L W E + + R+GNTS++S+ L + GR+R+GD ++FG+
Sbjct: 252 IIDAARERLGLP-W--ERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGA 308
Query: 477 GFKCNSAV 484
G +AV
Sbjct: 309 GLTWAAAV 316
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/354 (19%), Positives = 137/354 (38%), Gaps = 60/354 (16%)
Query: 148 KKILERSGL-GQHTYFPEAVLRVPPNPCMAEAR--NEAEMVMFGAIDELLSKTGVKA--- 201
K++ E S + ++ + E +L+ PN EA N + + EL + +KA
Sbjct: 53 KRLCENSRIEKRYLHVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKE 112
Query: 202 -----KDIGILVVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQ 256
I L+V C P + L ++ + +GC AG + LAK
Sbjct: 113 WGQPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKD 172
Query: 257 LLQVHPNSYALVVSMENITLNWYFGNDRSML---VSNCLFRMGGAAILLXXXXXXXXXXK 313
+ + + + L+V E +T + G + L + LF G AA+++
Sbjct: 173 IAENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERP 231
Query: 314 -YQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVL 372
++L+ T +T + + A+ G L++ ++ +
Sbjct: 232 IFELVSTAQT------------------------IVPESHGAIEGHLLESGLSFHLYKTV 267
Query: 373 PMSEQLLFFATLVAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELS 428
P TL++ + + P D+ F + H GG A+LD++ + L
Sbjct: 268 P---------TLISNNIKTCLSDAFTPLNISDWNSLF--WIAHPGGPAILDQVTAKVGLE 316
Query: 429 EWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK----GRMRKGDR-TWQIAFGSG 477
+ ++ +R L +GN SS+++++ + K G+ G+ W + FG G
Sbjct: 317 KEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFG 370
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 118/310 (38%), Gaps = 44/310 (14%)
Query: 178 ARNEAEMVM-FGAIDELLSKTGVKAKDIGILVV-NCSLFCPTPSLSAMIVNHYKLRGNIT 235
A NE M F A + G++ IG++VV S PS + I + ++G
Sbjct: 69 APNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG-CP 127
Query: 236 SYNLGGMGCSAGLI-SIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFR 294
++++ AG ++ +A Q ++ YALVV ++ DR ++ +F
Sbjct: 128 AFDVAA--AXAGFTYALSVADQYVKSGAVKYALVVG-SDVLARTCDPTDRGTII---IFG 181
Query: 295 MGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMA 354
G A +L + TH AD + D RV S L
Sbjct: 182 DGAGAAVLAASEEPGI---------ISTHLHADGSYGELLTLPNAD--RVNPENSIHLTM 230
Query: 355 VAGEALKTNITTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGG 414
E K +T L IV TL A + + ++ +P H
Sbjct: 231 AGNEVFKVAVTELAHIVDE---------TLAANNLDRSQLDWLVP-----------HQAN 270
Query: 415 RAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQIAF 474
++ K L +S M+ +TL R GNTS++S+ L + GR++ G AF
Sbjct: 271 LRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAF 327
Query: 475 GSGFKCNSAV 484
G GF SA+
Sbjct: 328 GGGFTWGSAL 337
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 118/310 (38%), Gaps = 44/310 (14%)
Query: 178 ARNEAEMVM-FGAIDELLSKTGVKAKDIGILVV-NCSLFCPTPSLSAMIVNHYKLRGNIT 235
A NE M F A + G++ IG++VV S PS + I + ++G
Sbjct: 46 APNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG-CP 104
Query: 236 SYNLGGMGCSAGLI-SIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFR 294
++++ AG ++ +A Q ++ YALVV ++ DR ++ +F
Sbjct: 105 AFDVAA--AXAGFTYALSVADQYVKSGAVKYALVVG-SDVLARTCDPTDRGTII---IFG 158
Query: 295 MGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMA 354
G A +L + TH AD + D RV S L
Sbjct: 159 DGAGAAVLAASEEPGI---------ISTHLHADGSYGELLTLPNAD--RVNPENSIHLTM 207
Query: 355 VAGEALKTNITTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGG 414
E K +T L IV TL A + + ++ +P H
Sbjct: 208 AGNEVFKVAVTELAHIVDE---------TLAANNLDRSQLDWLVP-----------HQAN 247
Query: 415 RAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQIAF 474
++ K L +S M+ +TL R GNTS++S+ L + GR++ G AF
Sbjct: 248 LRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAF 304
Query: 475 GSGFKCNSAV 484
G GF SA+
Sbjct: 305 GGGFTWGSAL 314
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 123/307 (40%), Gaps = 56/307 (18%)
Query: 194 LSKTGVKAKDIGILV-VNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISID 252
L G+ + IG+LV + S PS ++++ + + + ++++ C A + +D
Sbjct: 73 LIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVAN-ACLAFINGMD 131
Query: 253 LAKQLLQVHPNSYALVVSMENITLNWYFGNDR--SMLVSNCLFRMGGAAILLXXXXXXXX 310
+A ++L+ YALVV E L + +R S V+ FR AA+ L
Sbjct: 132 IAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMV 191
Query: 311 XXKYQLIHTVRTHKGADDK--------CYNCVFQREDDTKRVGVSLSKDLMAVAGEALKT 362
+ +L+ +KG + C + + DT+ L+ + G L
Sbjct: 192 MARTELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTR---------LLLIEGIKLA- 241
Query: 363 NITTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELE 422
Q F A A++V + + F IH R
Sbjct: 242 --------------QKTFLA---ARQVLGWAVDE--------LDQFVIHQVSRPHTAAFV 276
Query: 423 KNLELSEWHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRMRKGDRTWQIAFGSGFKC 480
K+ + ++P++ MT++ GN +S+ L+ + GR++KGDR + GSG C
Sbjct: 277 KS-----FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNC 331
Query: 481 NSA--VW 485
+ A VW
Sbjct: 332 SMAEVVW 338
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 408 FCIHAGGRAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGD 467
F +H R +LD L K +++ E H P M GNT SS+L L A G + +G
Sbjct: 289 FVLHQANRFMLDALRKKMKIPE-HKFPVLME--HCGNTVSSTLPLALETMRANGTLARGM 345
Query: 468 RTWQIAFGSGF 478
R + FG G+
Sbjct: 346 RLMLLGFGVGY 356
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 408 FCIHAGGRAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRM 463
+ H G A++D +E L+LS + +R +GN S+++++ + S +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 464 RKGDR-TWQI--AFGSGFKCNSAVWQAL 488
GD W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 408 FCIHAGGRAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRM 463
+ H G A++D +E L+LS + +R +GN S+++++ + S +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 464 RKGDR-TWQI--AFGSGFKCNSAVWQAL 488
GD W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 68/354 (19%), Positives = 136/354 (38%), Gaps = 60/354 (16%)
Query: 148 KKILERSGL-GQHTYFPEAVLRVPPNPCMAEAR--NEAEMVMFGAIDELLSKTGVKA--- 201
K++ E S + ++ + E +L+ PN EA N + + EL + +KA
Sbjct: 53 KRLCENSRIEKRYLHVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKE 112
Query: 202 -----KDIGILVVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQ 256
I L+V C P + L ++ + +GC AG + LAK
Sbjct: 113 WGQPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKD 172
Query: 257 LLQVHPNSYALVVSMENITLNWYFGNDRSML---VSNCLFRMGGAAILLXXXXXXXXXXK 313
+ + + + L+V E +T + G + L + + G AA+++
Sbjct: 173 IAENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERP 231
Query: 314 -YQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVL 372
++L+ T +T + + A+ G L++ ++ +
Sbjct: 232 IFELVSTAQT------------------------IVPESHGAIEGHLLESGLSFHLYKTV 267
Query: 373 PMSEQLLFFATLVAKKVFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLELS 428
P TL++ + + P D+ F + H GG A+LD++ + L
Sbjct: 268 P---------TLISNNIKTCLSDAFTPLNISDWNSLF--WIAHPGGPAILDQVTAKVGLE 316
Query: 429 EWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK----GRMRKGDR-TWQIAFGSG 477
+ ++ +R L +GN SS+++++ + K G+ G+ W + FG G
Sbjct: 317 KEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFG 370
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 112/299 (37%), Gaps = 41/299 (13%)
Query: 187 FGAIDELLSKTGVKAKDIGILVV-NCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCS 245
F A + G++ IG++VV S PS + I + ++G ++++ C+
Sbjct: 56 FEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKG-CPAFDVAAA-CA 113
Query: 246 AGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRMGGAAILLXXX 305
++ +A Q ++ YALVV ++ DR ++ +F G A +L
Sbjct: 114 GFTYALSVADQYVKSGAVKYALVVG-SDVLARTCDPTDRGTII---IFGDGAGAAVLAAS 169
Query: 306 XXXXXXXKYQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNIT 365
+ TH AD + D RV S L E K +T
Sbjct: 170 EEPGI---------ISTHLHADGSYGELLTLPNAD--RVNPENSIHLTXAGNEVFKVAVT 218
Query: 366 TLGPIVLPMSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL 425
L IV TL A + ++ +P H ++ K L
Sbjct: 219 ELAHIVDE---------TLAANNNDRSQLDWLVP-----------HQANLRIISATAKKL 258
Query: 426 ELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQIAFGSGFKCNSAV 484
S ++ +TL R GNTS++S+ L + GR++ G AFG GF SA+
Sbjct: 259 GXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 113/282 (40%), Gaps = 55/282 (19%)
Query: 218 PSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLN 277
PS ++++ + + + ++++ C A + +D+A ++L+ YALVV E L
Sbjct: 105 PSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDIAARMLERGEIDYALVVDGETANLV 163
Query: 278 WYFGNDR--SMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDK------ 329
+ +R S V+ FR AA+ L + +L+ +KG +
Sbjct: 164 YEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWN 223
Query: 330 --CYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATLVAK 387
C + + DT+ L+ + G L Q F A AK
Sbjct: 224 KLCRGNLDRMVTDTR---------LLLIEGIKLA---------------QKTFVA---AK 256
Query: 388 KVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSR-MTLY-RFGNT 445
+V ++ + F IH R K+ + ++P++ MT++ GN
Sbjct: 257 QVLGWAVEE--------LDQFVIHQVSRPHTAAFVKS-----FGIDPAKVMTIFGEHGNI 303
Query: 446 SSSSLWYELAYSEAKGRMRKGDRTWQIAFGSGFKCNSA--VW 485
+S+ L+ + GR++KGDR + GSG C+ A VW
Sbjct: 304 GPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 113/282 (40%), Gaps = 55/282 (19%)
Query: 218 PSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLN 277
PS ++++ + + + ++++ C A + +D+A ++L+ YALVV E L
Sbjct: 104 PSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDIAARMLERGEIDYALVVDGETANLV 162
Query: 278 WYFGNDR--SMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDK------ 329
+ +R S V+ FR AA+ L + +L+ +KG +
Sbjct: 163 YEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWN 222
Query: 330 --CYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATLVAK 387
C + + DT+ L+ + G L Q F A AK
Sbjct: 223 KLCRGNLDRMVTDTR---------LLLIEGIKLA---------------QKTFVA---AK 255
Query: 388 KVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSR-MTLY-RFGNT 445
+V ++ + F IH R K+ + ++P++ MT++ GN
Sbjct: 256 QVLGWAVEE--------LDQFVIHQVSRPHTAAFVKS-----FGIDPAKVMTIFGEHGNI 302
Query: 446 SSSSLWYELAYSEAKGRMRKGDRTWQIAFGSGFKCNSA--VW 485
+S+ L+ + GR++KGDR + GSG C+ A VW
Sbjct: 303 GPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 187 FGAIDELLSKTGVKAKDIGILVV-NCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCS 245
F A + G++ IG++VV S PS + I + ++G ++++
Sbjct: 56 FEAATRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKG-CPAFDV--AAAX 112
Query: 246 AGLI-SIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRMGGAAILLXX 304
AG ++ +A Q ++ YALVV ++ DR ++ +F G A +L
Sbjct: 113 AGFTYALSVADQYVKSGAVKYALVVG-SDVLARTCDPTDRGTII---IFGDGAGAAVLAA 168
Query: 305 XXXXXXXXKYQLIHTVRTHKGADDKCYNCVFQREDDTKRVGVSLSKDLMAVAGEALKTNI 364
+ TH AD + D RV S L E K +
Sbjct: 169 SEEPGI---------ISTHLHADGSYGELLTLPNAD--RVNPENSIHLTXAGNEVFKVAV 217
Query: 365 TTLGPIVLPMSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKN 424
T L IV TL A + + ++ +P H ++ K
Sbjct: 218 TELAHIVDE---------TLAANNLDRSQLDWLVP-----------HQANLRIISATAKK 257
Query: 425 LELSEWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRMRKGDRTWQIAFGSGFKCNSAV 484
L S ++ +TL R GNTS++S+ L + GR++ G AFG GF SA+
Sbjct: 258 LGXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 194 LSKTGVKAKDIGILVVNCSLFCPTPSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDL 253
L G+ D+ L+ + S P L + N LRG+ C AG S+ L
Sbjct: 149 LQIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLAL 208
Query: 254 AKQLLQVHPNSYALVVSMENITLNWYFGNDR-SMLVSNCLF 293
A L+ P+ LVV E ++ + +D L+ LF
Sbjct: 209 AADLVAADPDRVVLVVISEALSTTYQPADDTLESLIVRLLF 249
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 345 GVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQ----LLFFA 382
G + D++A A E++ +++TTLGP P S++ + FFA
Sbjct: 423 GKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWLVDFFA 464
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 111/267 (41%), Gaps = 59/267 (22%)
Query: 218 PSLSAMIVNHYKLRGNITSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENIT-- 275
PS + ++ K +G + ++++ CS + ++D+A ++ LV+ E ++
Sbjct: 87 PSTACLVQAQLKAKG-VYAFDISA-ACSGFIYALDIADSFIKSGKAKNVLVIGAEKLSEA 144
Query: 276 LNWYFGNDRSMLVSNCLFRMGGAAILLXXXXXXXXXXKYQLIHTVRTHKGADDKCY---N 332
++W DRS V LF G A+++ K ++ T +G+ ++ N
Sbjct: 145 VDW---EDRSTCV---LFGDGAGAVVVTRSED-----KSDILATRMYAEGSLEELLHADN 193
Query: 333 CVFQREDDTKRVGVSLSKDLMAVAGEALKTNITTLGPIVLPMSEQLLFFATLVAKKVF-K 391
C + R ++L VA V M E V ++V K
Sbjct: 194 CGYIRMK---------GRELFKVA--------------VRSMEE--------VCREVLEK 222
Query: 392 MKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSEWHMEPSRMTLYRFGNTSSSSLW 451
+KP + L H A R +++ L + L + + E + + ++GNTS++S+
Sbjct: 223 AGVKP--EEVSLVIPH---QANVR-IINALAEKLNIPK---EKVFVNIQKYGNTSAASIP 273
Query: 452 YELAYSEAKGRMRKGDRTWQIAFGSGF 478
L + +G++++GD A G G
Sbjct: 274 IALHEAIKEGKVKRGDLILMTAMGGGL 300
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|E Chain E, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 355
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 179 RNEAEMVMFGAIDELLSKTGVKAKDIGILVVNCSLFCPTP 218
RN+ EMV++ A +++ G AK++ V LFC +P
Sbjct: 260 RNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSP 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,885,963
Number of Sequences: 62578
Number of extensions: 577282
Number of successful extensions: 1261
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 81
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)