BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009936
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D1G|A Chain A, Structure Of Francisella Tularensis Acid Phosphatase A
(Acpa) Bound To Orthovanadate
pdb|2D1G|B Chain B, Structure Of Francisella Tularensis Acid Phosphatase A
(Acpa) Bound To Orthovanadate
Length = 498
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 291 LRASPQWNETLFVITYDEHGGFYDHVTTPVRGVPSPDGIVGPEPFLFKFDRLGVRVPTIA 350
++ S W+ T +I YD+ G YDHV +P G G G R+P +
Sbjct: 370 IQQSKDWDSTAIIIIYDDSDGDYDHVYSPKSQFSDIKGRQG----------YGPRLPMLV 419
Query: 351 ISPWIEKGTVVH 362
ISP+ + V H
Sbjct: 420 ISPYAKANYVDH 431
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 15 IVRNNNVTHAGSPIKTIVVLVMENRSFDHMIG-WMKKLNPE 54
+ N N +PIK +V++ EN SFD G + NPE
Sbjct: 21 LFNNANTLKTTTPIKHVVIIFQENNSFDRYFGMYPNAKNPE 61
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)
Query: 95 AIREQIFGSNDTSSDHPPMNGFAQQAFSMDPSLNMSHNVMNGFEPDMVAVYKTLVSEFAV 154
++R+ +F N D+ P+ F Q A + DP+ + +N + D + KT V
Sbjct: 138 SLRQTVF-LNVIGEDYIPI-AF-QTARAADPNAKL---YINDYNLDSASYPKTQAIVNRV 191
Query: 155 FDRWFASVPSSTQPNRLYVHSGTSAGATSNIPAKLAKGYPQRTIFENLDDAGISFGIYYQ 214
A VP ++ ++ +G AG +P + G P+ I E LD AG S Y
Sbjct: 192 KQWRAAGVPIDGIGSQTHLSAGQGAGVLQALPLLASAGTPEVAITE-LDVAGASPTDYVN 250
Query: 215 NIPATLFYRNLRKIKYWGKFHP 236
+ A L ++ I WG P
Sbjct: 251 VVNACLNVQSCVGITVWGVADP 272
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)
Query: 95 AIREQIFGSNDTSSDHPPMNGFAQQAFSMDPSLNMSHNVMNGFEPDMVAVYKTLVSEFAV 154
++R+ +F N D+ P+ F Q A + DP+ + +N + D + KT V
Sbjct: 138 SLRQTVF-LNVIGEDYIPI-AF-QTARAADPNAKL---YINDYNLDSASYPKTQAIVNRV 191
Query: 155 FDRWFASVPSSTQPNRLYVHSGTSAGATSNIPAKLAKGYPQRTIFENLDDAGISFGIYYQ 214
A VP ++ ++ +G AG +P + G P+ I E LD AG S Y
Sbjct: 192 KQWRAAGVPIDGIGSQTHLSAGQGAGVLQALPLLASAGTPEVAITE-LDVAGASPTDYVN 250
Query: 215 NIPATLFYRNLRKIKYWGKFHP 236
+ A L ++ I WG P
Sbjct: 251 VVNACLNVQSCVGITVWGVADP 272
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 95 AIREQIFGSNDTSSDHPPMNGFAQQAFSMDPSLNMSHNVMNGFEPDMVAVYKTLVSEFAV 154
++R+ +F N D+ P+ F Q A + DP+ + +N + D + KT V
Sbjct: 138 SLRQTVF-LNVIGEDYIPI-AF-QTARAADPNAKL---YINDYNLDSASYPKTQAIVNRV 191
Query: 155 FDRWFASVPSSTQPNRLYVHSGTSAGATSNIPAKLAKGYPQRTIFENLDDAGISFGIYYQ 214
A VP ++ ++ +G AG +P + G P+ I E LD AG S Y
Sbjct: 192 KKWRAAGVPIDGIGSQTHLSAGQGAGVLQALPLLASAGTPEVAITE-LDVAGASPTDYVN 250
Query: 215 NIPATLFYRNLRKIKYWGKFHP 236
+ A L + I WG P
Sbjct: 251 VVNACLNVSSCVGITVWGVADP 272
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 370 ATSEFEHSSIPATVKKLFNLSAPFLTKRDAWAGTFEGIVQTRTAPRTDCPEQLPTPTKIR 429
T EFE S +T+K L ++ + +R+ D P+ + IR
Sbjct: 37 GTQEFEDVSYESTLKALADVEVTYTVQRNI----------------LDFPQHVSPSKDIR 80
Query: 430 QGEANENAKLSEFQQELMQLAAVLKGDHVLTSFPDNIGKDMTVKEGKEYMEDAVK 484
+ KLSEF E+ V + + + + KD E Y+E +K
Sbjct: 81 TASTEADKKLSEFDVEMSMREDVYQR---IVWLQEKVQKDSLRPEAARYLERLIK 132
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 370 ATSEFEHSSIPATVKKLFNLSAPFLTKRDAWAGTFEGIVQTRTAPRTDCPEQLPTPTKIR 429
T EFE S +T+K L ++ + +R+ D P+ + IR
Sbjct: 37 GTQEFEDVSYESTLKALADVEVTYTVQRNI----------------LDFPQHVSPSKDIR 80
Query: 430 QGEANENAKLSEFQQELMQLAAVLKGDHVLTSFPDNIGKDMTVKEGKEYMEDAVK 484
+ KLSEF E+ V + + + + KD E Y+E +K
Sbjct: 81 TASTEADKKLSEFDVEMSMREDVYQR---IVWLQEKVQKDSLRPEAARYLERLIK 132
>pdb|2W6C|X Chain X, Ache In Complex With A Bis-(-)-Nor-Meptazinol Derivative
pdb|2W9I|A Chain A, Ache In Complex With Methylene Blue
Length = 586
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 489 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 530
>pdb|4HJ1|A Chain A, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
pdb|4HJ1|B Chain B, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
pdb|4HJ1|C Chain C, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
pdb|4HJ1|D Chain D, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (glycosylated)
Length = 432
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 48/139 (34%), Gaps = 35/139 (25%)
Query: 43 HMIGWMKKLNPEINGVDGSEWNPLSTTDPKSQRFFFKNQAQFVDPDPGHSFQAIREQIFG 102
+ I W+ KL EI DGS +ST D + F N S E I G
Sbjct: 164 NCIDWVHKLTLEITDFDGS----VSTIDLGASSSRFTNWGSV-------SLSLDAEGISG 212
Query: 103 SNDTSSDHPPMNGFA----------QQAFSMDPSLNMSHNVMNGFEP------------- 139
SN S P G+A +Q F + N +V++ E
Sbjct: 213 SNSFSFIESPGKGYAIVDEPFSEIPRQGFLGEIRCNSESSVLSAHESCLRAPNLISYKPM 272
Query: 140 -DMVAVYKTLVSEFAVFDR 157
D + L+ F VF+R
Sbjct: 273 IDQLECTTNLIDPFVVFER 291
>pdb|1GQR|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With
Rivastigmine
pdb|1GQS|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With Nap
pdb|1JJB|A Chain A, A Neutral Molecule In Cation-Binding Site: Specific
Binding Of Peg-Sh To Acetylcholinesterase From Torpedo
Californica
Length = 532
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 465 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 506
>pdb|3GEL|A Chain A, O-Methylphosphorylated Torpedo Acetylcholinesterase
Obtained By Reaction With Methyl Paraoxon (Aged)
Length = 532
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 465 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 506
>pdb|2CEK|A Chain A, Conformational Flexibility In The Peripheral Site Of
Torpedo Californica Acetylcholinesterase Revealed By The
Complex Structure With A Bifunctional Inhibitor
Length = 535
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 468 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 509
>pdb|2C58|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
20mm Acetylthiocholine
Length = 537
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 468 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 509
>pdb|2DFP|A Chain A, X-Ray Structure Of Aged Di-Isopropyl-Phosphoro-Fluoridate
(Dfp) Bound To Acetylcholinesterase
Length = 534
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 467 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 508
>pdb|3I6M|A Chain A, 3d Structure Of Torpedo Californica Acetylcholinesterase
Complexed With N-Piperidinopropyl-Galanthamine
pdb|3I6Z|A Chain A, 3d Structure Of Torpedo Californica Acetylcholinesterase
Complexed With N-Saccharinohexyl-Galanthamine
Length = 534
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 467 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 508
>pdb|1FSS|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With
Fasciculin-Ii
pdb|1CFJ|A Chain A, Methylphosphonylated Acetylcholinesterase (Aged) Obtained
By Reaction With O-Isopropylmethylphosphonofluoridate
(Gb, Sarin)
pdb|1VXO|A Chain A, Methylphosphonylated Acetylcholinesterase (Aged) Obtained
By Reaction With
O-Ethyl-S-[2-[bis(1-Methylethyl)amino]ethyl]
Methylphosphonothioate (Vx)
pdb|1VXR|A Chain A, O-Ethylmethylphosphonylated Acetylcholinesterase Obtained
By Reaction With
O-Ethyl-S-[2-[bis(1-Methylethyl)amino]ethyl]
Methylphosphonothioate (Vx)
pdb|1QTI|A Chain A, Acetylcholinesterase (E.C.3.1.1.7)
pdb|1QID|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point A) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIE|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point B) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIF|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point C) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIG|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point D) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIH|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point E) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QII|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point F) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIJ|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point G) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIK|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point H) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIM|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point I) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1EA5|A Chain A, Native Acetylcholinesterase (E.C. 3.1.1.7) From Torpedo
Californica At 1.8a Resolution
pdb|1GPK|A Chain A, Structure Of Acetylcholinesterase Complex With
(+)-Huperzine A At 2.1a Resolution
pdb|1GPN|A Chain A, Structure Of Acetylcholinesterase Complexed With Huperzine
B At 2.35a Resolution
pdb|2C4H|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
500mm Acetylthiocholine
pdb|2C5F|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium
pdb|2C5G|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
20mm Thiocholine
pdb|1AMN|A Chain A, Transition State Analog: Acetylcholinesterase Complexed
With M-(N,N,N-Trimethylammonio)trifluoroacetophenone
pdb|1AX9|A Chain A, Acetylcholinesterase Complexed With Edrophonium, Laue Data
pdb|1OCE|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With Mf268
pdb|1VOT|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With
Huperzine A
pdb|2ACE|A Chain A, Native Acetylcholinesterase (E.C. 3.1.1.7) From Torpedo
Californica
pdb|2ACK|A Chain A, Acetylcholinesterase Complexed With Edrophonium,
Monochromatic Data
pdb|2V96|A Chain A, Structure Of The Unphotolysed Complex Of Tcache With 1-(2-
Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine At 100k
pdb|2V96|B Chain B, Structure Of The Unphotolysed Complex Of Tcache With 1-(2-
Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine At 100k
pdb|2V97|A Chain A, Structure Of The Unphotolysed Complex Of Tcache With
1-(2- Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature
pdb|2V97|B Chain B, Structure Of The Unphotolysed Complex Of Tcache With
1-(2- Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature
pdb|2V98|A Chain A, Structure Of The Complex Of Tcache With
1-(2-Nitrophenyl)-2, 2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature, During
The First 5 Seconds Of Which Laser Irradiation At 266nm
Took Place
pdb|2V98|B Chain B, Structure Of The Complex Of Tcache With
1-(2-Nitrophenyl)-2, 2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature, During
The First 5 Seconds Of Which Laser Irradiation At 266nm
Took Place
pdb|2VA9|A Chain A, Structure Of Native Tcache After A 9 Seconds Annealing To
Room Temperature During The First 5 Seconds Of Which
Laser Irradiation At 266nm Took Place
pdb|2VA9|B Chain B, Structure Of Native Tcache After A 9 Seconds Annealing To
Room Temperature During The First 5 Seconds Of Which
Laser Irradiation At 266nm Took Place
pdb|2VJA|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 100k
pdb|2VJA|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 100k
pdb|2VJB|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset D At 100k
pdb|2VJB|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset D At 100k
pdb|2VJC|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-oxo-n,n,n-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 150k
pdb|2VJC|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-oxo-n,n,n-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 150k
pdb|2VJD|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset C At 150k
pdb|2VJD|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset C At 150k
pdb|2VT6|A Chain A, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 9400000 Gy
pdb|2VT6|B Chain B, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 9400000 Gy
pdb|2VT7|A Chain A, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 800000 Gy
pdb|2VT7|B Chain B, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 800000 Gy
pdb|2WFZ|A Chain A, Non-Aged Conjugate Of Torpedo Californica
Acetylcholinesterase With Soman
pdb|2WG0|A Chain A, Aged Conjugate Of Torpedo Californica Acetylcholinesterase
With Soman (Obtained By In Crystallo Aging)
pdb|2WG1|A Chain A, Ternary Complex Of The Aged Conjugate Of Torpedo
Californica Aceylcholinesterase With Soman And 2-Pam
pdb|2WG2|A Chain A, Non-Aged Conjugate Of Torpedo Californica
Acetylcholinesterase With Soman (Alternative Refinement)
pdb|2XI4|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
Aflatoxin B1 (Orthorhombic Space Group)
pdb|2XI4|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With
Aflatoxin B1 (Orthorhombic Space Group)
Length = 537
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 468 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 509
>pdb|1SOM|A Chain A, Torpedo Californica Acetylcholinesterase Inhibited By
Nerve Agent Gd (Soman).
pdb|1DX6|A Chain A, Structure Of Acetylcholinesterase Complexed With
(-)-Galanthamine At 2.3a Resolution
pdb|1E3Q|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With
Bw284c51
pdb|1E66|A Chain A, Structure Of Acetylcholinesterase Complexed With
(-)-Huprine X At 2.1a Resolution
pdb|1HBJ|A Chain A, X-Ray Crystal Structure Of Complex Between Torpedo
Californica Ache And A Reversible Inhibitor, 4-Amino-5-
Fluo Ro-2-Methyl-3-(3-Trifluoroacetylbenzylthiomethyl)
Quinoline
pdb|1H22|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With (S,S)-(-)-Bis(10)-Hupyridone At 2.15a Resolution
pdb|1H23|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With (S,S)-(-)-Bis(12)-Hupyridone At 2.15a Resolution
pdb|1W4L|A Chain A, Complex Of Tcache With Bis-Acting Galanthamine Derivative
pdb|1W6R|A Chain A, Complex Of Tcache With Galanthamine Derivative
pdb|1W75|A Chain A, Native Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache)
pdb|1W75|B Chain B, Native Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache)
pdb|1W76|A Chain A, Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache) Complexed With Bis-Acting
Galanthamine Derivative
pdb|1W76|B Chain B, Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache) Complexed With Bis-Acting
Galanthamine Derivative
pdb|1ODC|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With N-4'-Quinolyl-N'-9"-(1",2",3",4"
-Tetrahydroacridinyl)-1,8-Diaminooctane At 2.2a
Resolution
pdb|1U65|A Chain A, Ache W. Cpt-11
pdb|1ZGB|A Chain A, Crystal Structure Of Torpedo Californica
Acetylcholinesterase In Complex With An
(R)-Tacrine(10)-Hupyridone Inhibitor.
pdb|1ZGC|A Chain A, Crystal Structure Of Torpedo Californica
Acetylcholinesterase In Complex With An
(Rs)-Tacrine(10)-Hupyridone Inhibitor.
pdb|1ZGC|B Chain B, Crystal Structure Of Torpedo Californica
Acetylcholinesterase In Complex With An
(Rs)-Tacrine(10)-Hupyridone Inhibitor.
pdb|2BAG|A Chain A, 3d Structure Of Torpedo Californica Acetylcholinesterase
Complexed With Ganstigmine
pdb|2CKM|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With
Alkylene-Linked Bis-Tacrine Dimer (7 Carbon Linker)
pdb|2CMF|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With
Alkylene-Linked Bis-Tacrine Dimer (5 Carbon Linker)
pdb|2J4F|A Chain A, Torpedo Acetylcholinesterase - Hg Heavy-Atom Derivative
pdb|1EVE|A Chain A, Three Dimensional Structure Of The Anti-Alzheimer Drug,
E2020 (Aricept), Complexed With Its Target
Acetylcholinesterase
pdb|2J3Q|A Chain A, Torpedo Acetylcholinesterase Complexed With Fluorophore
Thioflavin T
pdb|2VQ6|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With 2-
Pam
pdb|2J3D|A Chain A, Native Monoclinic Form Of Torpedo Acetylcholinesterase
pdb|3M3D|A Chain A, Crystal Structure Of Acetylcholinesterase In Complex With
Xenon
pdb|3ZV7|A Chain A, Torpedo Californica Acetylcholinesterase Inhibition By
Bisnorcymserine
Length = 543
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 468 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 509
>pdb|1EEA|A Chain A, Acetylcholinesterase
Length = 534
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 468 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 509
>pdb|4HJC|A Chain A, Crystal Structure Of Glycoprotein C From Rift Valley Fever
Virus (non- Glycosylated)
Length = 428
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 48/139 (34%), Gaps = 35/139 (25%)
Query: 43 HMIGWMKKLNPEINGVDGSEWNPLSTTDPKSQRFFFKNQAQFVDPDPGHSFQAIREQIFG 102
+ I W+ KL EI DGS +ST D + F N S E I G
Sbjct: 161 NCIDWVHKLTLEITDFDGS----VSTIDLGASSSRFTNWGSV-------SLSLDAEGISG 209
Query: 103 SNDTSSDHPPMNGFA----------QQAFSMDPSLNMSHNVMNGFEP------------- 139
SN S P G+A +Q F + N +V++ E
Sbjct: 210 SNSFSFIESPGKGYAIVDEPFSEIPRQGFLGEIRCNSESSVLSAHESCLRAPNLISYKPM 269
Query: 140 -DMVAVYKTLVSEFAVFDR 157
D + L+ F VF+R
Sbjct: 270 IDQLECTTNLIDPFVVFER 288
>pdb|1UT6|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With N-9-(1',2',3',4'-Tetrahydroacridinyl)-1,8-
Diaminooctane At 2.4 Angstroms Resolution.
pdb|1ACJ|A Chain A, Quaternary Ligand Binding To Aromatic Residues In The
Active-Site Gorge Of Acetylcholinesterase
pdb|1ACL|A Chain A, Quaternary Ligand Binding To Aromatic Residues In The
Active-Site Gorge Of Acetylcholinesterase
Length = 537
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 226 RKIKYWGKFHPYGTSFKKDARDGKLPGYVVVEQRYTDTKSEP 267
R + YW F G + +++ K P + EQ++ D +EP
Sbjct: 468 RIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEP 509
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,519,031
Number of Sequences: 62578
Number of extensions: 749571
Number of successful extensions: 1688
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 32
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)