BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009939
         (522 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
           SV=1
          Length = 476

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 235/446 (52%), Gaps = 39/446 (8%)

Query: 85  EAGSWAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKKRLRQMDRHKWRSLHHVL-- 142
           E+       I++VP+      + +AY P++VS+GPYH+G+K L+ + +HK R L   L  
Sbjct: 39  ESAGKESCCIFRVPESFV-ALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDE 97

Query: 143 -KRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVLDGCFVLELFRGASEGFT 201
            K+   +  + + ++ +LE+K R  Y   +  + +D   MMVLDGCF+L +F   S G  
Sbjct: 98  AKKKDVEENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLIMS-GNI 155

Query: 202 RLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDRL-LGLQFGKPEQKGLVAKLALR 260
            L     DP+F++   + SIQ D+++LENQ+P F+L  L +G + G       + ++A  
Sbjct: 156 ELS---EDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSD---LNRIAFH 209

Query: 261 FFDPLMPTDEPLTKGERNKLESSLGNANFFDPLSDQCGLHCLDVFRKSLL---RSGPKPE 317
           FF    P D+  +  E+++               +    H LD+ R++ L       K  
Sbjct: 210 FFK--NPIDKEGSYWEKHR---------------NYKAKHLLDLIRETFLPNTSESDKAS 252

Query: 318 PPKIWIK-RWSQTNRV--ADKRRQQLIHCVTELREAGVKFRKR--KTDRFWDIKFKNGIL 372
            P + ++    ++  V   D +   LI     LR  G+KFR R  K D   +++ K   L
Sbjct: 253 SPHVQVQLHEGKSGNVPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKL 312

Query: 373 SIPRLFVHDGTKSLFLNLIAFEQCHFDCSNDITSFVIFMDNLINSPEDVGYLHYCG-IIE 431
            IP+L       S FLN +AFEQ + D SN+IT++++FM  L+N+ EDV +L     IIE
Sbjct: 313 QIPQLRFDGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIE 372

Query: 432 HWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPW 491
           +  GS+ EV++ F  + ++VVF+++ SYL+ + + VN+Y    +N   A  RH +F +PW
Sbjct: 373 NHFGSNNEVSEFFKTISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPW 432

Query: 492 AIISLVAAVVLLLLTFAQTFYGVYGY 517
             +S  A + ++LLT  Q+   +  Y
Sbjct: 433 TFLSSCAVLFVILLTMLQSTVAILSY 458


>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
           GN=At3g02645 PE=3 SV=1
          Length = 529

 Score = 82.8 bits (203), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 21/190 (11%)

Query: 66  DSEWVISIKEKLEQARQDDEAGSWAKLSIYKVPQHLREGGDDRAYVPQIVSLGPYHHGKK 125
           ++ WVI++++ L+ A  ++       +SI+ VP+ L     D +Y P  VS+GPYH  K 
Sbjct: 18  ETRWVINVQKSLD-AELEEHDLEEVTVSIFNVPKALMCSHPD-SYTPHRVSIGPYHCLKP 75

Query: 126 RLRQMDRHKWRSLHHVLKR-NSQDIKIYLDSMKELEEKARACYEGPISLSSNDFAEMMVL 184
            L +M+R+K      +  + NS      ++ ++ +E K RACY   I  +      +M +
Sbjct: 76  ELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAV 135

Query: 185 DGCFVLEL-----FRGASEGFTRLGYPRNDPVFAMRGSMHSIQRDMIMLENQLPLFILDR 239
           D  F++E      FR       R+G+             + I RD++M+ENQ+PLF+L +
Sbjct: 136 DSSFLIEFLKIYSFRKVETLINRVGH-------------NEILRDIMMIENQIPLFVLRK 182

Query: 240 LLGLQFGKPE 249
            L  Q    E
Sbjct: 183 TLEFQLESTE 192



 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 3/155 (1%)

Query: 341 IHCVTELREAGVKFRKRKTDRFWDIKF--KNGILSIPRLFVHDGTKSLFLNLIAFEQCHF 398
           I  V++L +AGV+F+         + F   +G   +P + +   T+++  NL+A+E  + 
Sbjct: 345 IPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNT 404

Query: 399 DCSNDITSFVIFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEEVVFDINDS 458
                 T +   ++ +I+S EDV  L   G++   L SD E A+++N + + V       
Sbjct: 405 SGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLT-KVG 463

Query: 459 YLSRLSEDVNQYYNHKWNAWRASLRHKYFNNPWAI 493
           +L +  EDVN+YY  +W      L   Y    W I
Sbjct: 464 FLDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSWQI 498


>sp|A1SRH8|CAPP_PSYIN Phosphoenolpyruvate carboxylase OS=Psychromonas ingrahamii (strain
           37) GN=ppc PE=3 SV=1
          Length = 878

 Score = 33.5 bits (75), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 119 PYHHGKKRLRQMDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKARACYEGPISLSSNDF 178
           PY    ++LR   +    SL   L+    D K  + + K+L+E    CY    ++  N  
Sbjct: 310 PYRAILRKLRSELKETLASLSATLQNQRSDEKDIITTSKQLKEPLLLCYHSLKNMGMNSI 369

Query: 179 AEMMVLD-----GCFVLELFR 194
           A  ++LD      CF + L +
Sbjct: 370 ANGLILDILRRLNCFGINLLK 390


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,378,357
Number of Sequences: 539616
Number of extensions: 8814059
Number of successful extensions: 20433
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 20419
Number of HSP's gapped (non-prelim): 13
length of query: 522
length of database: 191,569,459
effective HSP length: 122
effective length of query: 400
effective length of database: 125,736,307
effective search space: 50294522800
effective search space used: 50294522800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)