Query 009939
Match_columns 522
No_of_seqs 188 out of 691
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_G Cytochrome C oxidase po 16.6 86 0.0029 25.2 2.8 25 489-513 14-38 (85)
2 2y69_G Cytochrome C oxidase po 13.7 1.1E+02 0.0038 25.1 2.8 25 489-513 26-50 (97)
3 3s8f_C Cytochrome C oxidase po 13.3 1E+02 0.0036 20.4 2.0 24 495-518 7-30 (34)
4 2knc_B Integrin beta-3; transm 10.3 2E+02 0.0067 22.6 3.1 18 489-506 9-27 (79)
5 2kog_A Vesicle-associated memb 9.0 2E+02 0.0069 24.3 2.9 14 490-503 98-111 (119)
6 2l27_B Peptide agonist; CRF, E 8.5 38 0.0013 22.9 -1.5 21 375-396 1-21 (38)
7 2veb_A Protoglobin; hemoprotei 7.7 2.2E+02 0.0075 26.3 2.7 60 409-470 27-96 (195)
8 1awc_A Protein (GA binding pro 7.5 2E+02 0.0069 24.1 2.2 60 435-499 32-93 (110)
9 3ism_C CG4930; endonuclease, e 7.4 4.2E+02 0.014 26.3 4.7 67 418-484 219-301 (359)
10 2rmf_A Urocortin, HUCN1; CRF l 6.9 31 0.0011 23.6 -2.5 16 375-391 3-18 (40)
No 1
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=16.64 E-value=86 Score=25.15 Aligned_cols=25 Identities=12% Similarity=0.297 Sum_probs=21.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 009939 489 NPWAIISLVAAVVLLLLTFAQTFYG 513 (522)
Q Consensus 489 nPW~~is~vaAvvlL~lT~~QT~~s 513 (522)
+-|..||+++|+=+++++.+.++..
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~~ 38 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWLH 38 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999888743
No 2
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=13.67 E-value=1.1e+02 Score=25.10 Aligned_cols=25 Identities=12% Similarity=0.297 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 009939 489 NPWAIISLVAAVVLLLLTFAQTFYG 513 (522)
Q Consensus 489 nPW~~is~vaAvvlL~lT~~QT~~s 513 (522)
+-|..||+++|+=+++++.+.++..
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~~ 50 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWLH 50 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999999888743
No 3
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=13.27 E-value=1e+02 Score=20.38 Aligned_cols=24 Identities=29% Similarity=0.575 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc
Q 009939 495 SLVAAVVLLLLTFAQTFYGVYGYY 518 (522)
Q Consensus 495 s~vaAvvlL~lT~~QT~~sv~~y~ 518 (522)
+++|+++++-+.++=+++.++..|
T Consensus 7 GTl~~V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHHHHHeee
Confidence 567777777788888888887554
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.30 E-value=2e+02 Score=22.58 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=10.3
Q ss_pred chhHHH-HHHHHHHHHHHH
Q 009939 489 NPWAII-SLVAAVVLLLLT 506 (522)
Q Consensus 489 nPW~~i-s~vaAvvlL~lT 506 (522)
|.|.++ +++|+++|+.+-
T Consensus 9 n~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHH
Confidence 566664 666665554443
No 5
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=8.99 E-value=2e+02 Score=24.26 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHH
Q 009939 490 PWAIISLVAAVVLL 503 (522)
Q Consensus 490 PW~~is~vaAvvlL 503 (522)
+|.+++++++++++
T Consensus 98 ~~iii~~iv~iii~ 111 (119)
T 2kog_A 98 MMIILGVICAIILI 111 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554433
No 6
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=8.49 E-value=38 Score=22.90 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=15.5
Q ss_pred ceEEeeCCcchhhhhhhHhhhc
Q 009939 375 PRLFVHDGTKSLFLNLIAFEQC 396 (522)
Q Consensus 375 P~L~Idd~T~~llrNLiAfEqc 396 (522)
|||.|| -|--+|||++-....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHHH
Confidence 677776 488899999866543
No 7
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=7.65 E-value=2.2e+02 Score=26.31 Aligned_cols=60 Identities=17% Similarity=0.367 Sum_probs=32.1
Q ss_pred HHHhhccCChhhHHHHHHCCceeccCCChHHHHHHH-HHhhcccc----c-C----CCCchHHHHHHHHHHH
Q 009939 409 IFMDNLINSPEDVGYLHYCGIIEHWLGSDAEVADLF-NRLCEEVV----F-D----INDSYLSRLSEDVNQY 470 (522)
Q Consensus 409 ~fM~~LI~t~eDV~lL~~kGII~n~lgsdeeVa~lF-n~L~k~v~----~-d----~~~~yl~~v~~~l~~y 470 (522)
.+-..+-=|++|++.|++.|=+-- .--+|+++-| .-+.+.-. + + ++..|+.++.+.+..+
T Consensus 27 ~Lk~~~~fTeeD~~~L~~l~~~l~--~~~de~vD~FY~yl~~~pela~~l~~~~g~~~~~~l~Rlr~~~~~W 96 (195)
T 2veb_A 27 LLKEAVMFTAEDEEYIQKAGEVLE--DQVEEILDTWYGFVGSHPHLLYYFTSPDGTPNEKYLAAVRKRFSRW 96 (195)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHG--GGHHHHHHHHHHHHHTCHHHHGGGBCTTSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHhcChHHHHHhccccCCCcHHHHHHHHHHHHHH
Confidence 344444568999999998875522 2334444444 33332110 1 1 2234666666666555
No 8
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=7.53 E-value=2e+02 Score=24.12 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHhhcccccCCCCchHHHHHHHHHHHhcCch-HHH-hHhhccccccchhHHHHHHHH
Q 009939 435 GSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKW-NAW-RASLRHKYFNNPWAIISLVAA 499 (522)
Q Consensus 435 gsdeeVa~lFn~L~k~v~~d~~~~yl~~v~~~l~~y~~~rw-~~w-~a~l~~~yf~nPW~~is~vaA 499 (522)
-+.++||.++-.--.. ++=+ |.++.+.+.-||++.- .+- -..+..+|..+|+.+++.-++
T Consensus 32 ~d~e~VArlWG~rKnk----p~Mn-YeKlSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~~~l~g~~~~ 93 (110)
T 1awc_A 32 NQPELVAQKWGQRKNK----PTMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAA 93 (110)
T ss_dssp SSHHHHHHHHHHHHTC----TTCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHH
T ss_pred cCHHHHHHHHHHccCC----CCCC-HHHHHHHHHHHHhcCCEeeccCCeeEEecCCCHHHHhCCCHH
Confidence 4788999999655222 2223 5899999999998652 111 134666777899988776555
No 9
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=7.38 E-value=4.2e+02 Score=26.31 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=41.2
Q ss_pred hhhHHHHHHCCceeccCCChHHHHHHHHHhhcc-------cccCCCC--chHHHHHHHHHHHhc-----Cc--hHHHhHh
Q 009939 418 PEDVGYLHYCGIIEHWLGSDAEVADLFNRLCEE-------VVFDIND--SYLSRLSEDVNQYYN-----HK--WNAWRAS 481 (522)
Q Consensus 418 ~eDV~lL~~kGII~n~lgsdeeVa~lFn~L~k~-------v~~d~~~--~yl~~v~~~l~~y~~-----~r--w~~w~a~ 481 (522)
.+|-+.|-++||+.+-.-.|+---.-|+++|+. +.|+... .-+.++.+-|+.|.. .+ .|-|+..
T Consensus 219 leDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWIvk 298 (359)
T 3ism_C 219 LEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWIFN 298 (359)
T ss_dssp CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHHHH
Confidence 677778888888888776675555677888763 2354322 236788888888853 23 3667666
Q ss_pred hcc
Q 009939 482 LRH 484 (522)
Q Consensus 482 l~~ 484 (522)
|+.
T Consensus 299 lrd 301 (359)
T 3ism_C 299 LRD 301 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 10
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=6.92 E-value=31 Score=23.58 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=0.0
Q ss_pred ceEEeeCCcchhhhhhh
Q 009939 375 PRLFVHDGTKSLFLNLI 391 (522)
Q Consensus 375 P~L~Idd~T~~llrNLi 391 (522)
|||.|| -|--+||||+
T Consensus 3 PpiSiD-LTFHlLR~mi 18 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLL 18 (40)
T ss_dssp CCHHHH-HHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHH
Done!