Query 009939
Match_columns 522
No_of_seqs 188 out of 691
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 16:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 23.6 72 0.0052 24.3 5.8 51 133-183 4-77 (97)
2 d1v54g_ f.23.2.1 (G:) Mitochon 22.5 26 0.0019 26.3 2.8 24 489-512 14-37 (84)
3 d1awca_ a.4.5.21 (A:) GA bindi 9.9 1.1E+02 0.0083 23.6 3.6 63 434-501 31-95 (110)
4 d2i4ra1 c.149.1.1 (A:4-79) V-t 9.5 50 0.0037 23.8 1.3 22 96-118 55-76 (76)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 9.2 89 0.0065 17.6 2.0 19 503-521 6-25 (27)
6 d1f16a_ f.1.4.1 (A:) Proapopto 9.1 2.2E+02 0.016 23.8 5.8 60 438-497 108-176 (192)
7 d1duxc_ a.4.5.21 (C:) Elk-1 {H 8.8 2.2E+02 0.016 20.8 4.9 41 427-474 27-67 (86)
8 d1wpga4 f.33.1.1 (A:1-124,A:24 8.7 99 0.0072 29.6 3.6 25 482-506 401-425 (472)
9 d2pfxa1 a.152.1.3 (A:1-190) Un 8.5 1.3E+02 0.0092 24.9 3.8 51 404-460 125-186 (190)
10 d1pzra_ a.38.2.1 (A:) Erythron 7.8 76 0.0056 21.1 1.5 32 130-164 28-59 (60)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.59 E-value=72 Score=24.28 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCc-----cHHHHHHHHH---------------HHHHHHHhccCC---CCCCChHHHHHHHH
Q 009939 133 HKWRSLHHVLKRNSQ-----DIKIYLDSMK---------------ELEEKARACYEG---PISLSSNDFAEMMV 183 (522)
Q Consensus 133 ~K~~~l~~~l~r~~~-----~l~~~~~~i~---------------~~e~~aR~cY~~---~i~~~~~eF~~Mml 183 (522)
.|.||+-+.+..++. .++.|+..+- .+|..+|+|+.. .-.++-++|+.-|.
T Consensus 4 dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 4 DKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 589999999876542 2444443331 235667777742 22456666655444
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.45 E-value=26 Score=26.26 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 009939 489 NPWAIISLVAAVVLLLLTFAQTFY 512 (522)
Q Consensus 489 nPW~~is~vaAvvlL~lT~~QT~~ 512 (522)
.-|..||+++|+-+++++.+.++.
T Consensus 14 ~lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358889999999999999988864
No 3
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.87 E-value=1.1e+02 Score=23.63 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHhhcccccCCCCchHHHHHHHHHHHhcCchH-HHh-HhhccccccchhHHHHHHHHHH
Q 009939 434 LGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHKWN-AWR-ASLRHKYFNNPWAIISLVAAVV 501 (522)
Q Consensus 434 lgsdeeVa~lFn~L~k~v~~d~~~~yl~~v~~~l~~y~~~rw~-~w~-a~l~~~yf~nPW~~is~vaAvv 501 (522)
+-+-++||+++-.- |+- ++-+ |.++.+.+.-||++.-- +-. ..+..+|..+||.+++.-++-+
T Consensus 31 l~d~e~VA~lWG~~-Knk---~~M~-YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~l 95 (110)
T d1awca_ 31 LNQPELVAQKWGQR-KNK---PTMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAEL 95 (110)
T ss_dssp CSSHHHHHHHHHHH-HTC---TTCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHHH
T ss_pred eCCHHHHHHHHHHh-hCC---Cccc-HHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHHH
Confidence 34788999999543 321 2224 58999999999987531 111 3456777899999887666643
No 4
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.51 E-value=50 Score=23.80 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.2
Q ss_pred ecCccccccCCCCCcccceeeec
Q 009939 96 KVPQHLREGGDDRAYVPQIVSLG 118 (522)
Q Consensus 96 rVP~~lR~~~n~~aY~P~vVSIG 118 (522)
++|+.+++ .-.+...|.++.||
T Consensus 55 ~i~~~i~~-~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 55 KLPPVLRR-EIDEKVEPTFVSVG 76 (76)
T ss_dssp TSCHHHHT-TTTTCCSSEEEEEC
T ss_pred HhhHHHHH-HHhcCCCCEEEecC
Confidence 67888988 67788999999998
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.20 E-value=89 Score=17.64 Aligned_cols=19 Identities=37% Similarity=0.766 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhhcccc-CCC
Q 009939 503 LLLTFAQTFYGVYGYY-RPV 521 (522)
Q Consensus 503 L~lT~~QT~~sv~~y~-~~~ 521 (522)
++.|+...||+.|+-| +|+
T Consensus 6 i~~tl~glf~aayqqykrpn 25 (27)
T d2e74g1 6 VFATLGGLFYAAYQQYKRPN 25 (27)
T ss_dssp HHHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHHHHhcCCC
Confidence 4457777788888644 443
No 6
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.07 E-value=2.2e+02 Score=23.77 Aligned_cols=60 Identities=15% Similarity=0.370 Sum_probs=30.1
Q ss_pred HHHHHHH---HHhhcccccCCCCchHHHHHHHHHHHhcCchHHHhHh-----hccccccch-hHHHHHH
Q 009939 438 AEVADLF---NRLCEEVVFDINDSYLSRLSEDVNQYYNHKWNAWRAS-----LRHKYFNNP-WAIISLV 497 (522)
Q Consensus 438 eeVa~lF---n~L~k~v~~d~~~~yl~~v~~~l~~y~~~rw~~w~a~-----l~~~yf~nP-W~~is~v 497 (522)
.-|+.|| ..||..++-.....+...+++-+-+|-..+...|+.. -..+||.+| |..++++
T Consensus 108 GRIVal~~F~~~La~~~~~~~~~~~v~~i~~~~~~fl~~~l~~WI~~~GGW~g~~~~f~~~~w~~~~~~ 176 (192)
T d1f16a_ 108 GRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIF 176 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTTHHHHHTCSTHHHHHHCCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHcCCCchHHHHHH
Confidence 4555554 3455554432223456677777777765554455421 124456555 5554443
No 7
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.79 E-value=2.2e+02 Score=20.80 Aligned_cols=41 Identities=27% Similarity=0.385 Sum_probs=27.8
Q ss_pred CCceeccCCChHHHHHHHHHhhcccccCCCCchHHHHHHHHHHHhcCc
Q 009939 427 CGIIEHWLGSDAEVADLFNRLCEEVVFDINDSYLSRLSEDVNQYYNHK 474 (522)
Q Consensus 427 kGII~n~lgsdeeVa~lFn~L~k~v~~d~~~~yl~~v~~~l~~y~~~r 474 (522)
.|+.. +-+-++||+++-.--.. ++=+ |.++.+.+..||++.
T Consensus 27 ~g~Fk--lv~~~~VA~lWG~~Knk----~~Mn-YeklSRaLRyyY~~~ 67 (86)
T d1duxc_ 27 GGEFK--LVDAEEVARLWGLRKNK----TNMN-YDKLSRALRYYYDKN 67 (86)
T ss_dssp TTEEE--CTTHHHHHHHHHHTTTC----SCCC-HHHHHHHHHHHHTTT
T ss_pred CCEEE--ecCHHHHHHHHHhccCC----CCCC-HHHHHHHHHHHHhcc
Confidence 45543 34789999999644322 2223 589999999999764
No 8
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=8.74 E-value=99 Score=29.58 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=18.7
Q ss_pred hccccccchhHHHHHHHHHHHHHHH
Q 009939 482 LRHKYFNNPWAIISLVAAVVLLLLT 506 (522)
Q Consensus 482 l~~~yf~nPW~~is~vaAvvlL~lT 506 (522)
+++..|+|+|.+++++.++++.++.
T Consensus 401 ~~~~~~~N~~l~~av~i~~~l~~~i 425 (472)
T d1wpga4 401 MRMPPWVNIWLLGSICLSMSLHFLI 425 (472)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHHHHH
T ss_pred hhcCccccHHHHHHHHHHHHHHHHH
Confidence 4566789999999988887655444
No 9
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=8.49 E-value=1.3e+02 Score=24.93 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=30.8
Q ss_pred hhhHHHHHhh--ccCChhhHHHHHHCCceeccCCChHHHH---------HHHHHhhcccccCCCCchH
Q 009939 404 ITSFVIFMDN--LINSPEDVGYLHYCGIIEHWLGSDAEVA---------DLFNRLCEEVVFDINDSYL 460 (522)
Q Consensus 404 vTsYv~fM~~--LI~t~eDV~lL~~kGII~n~lgsdeeVa---------~lFn~L~k~v~~d~~~~yl 460 (522)
+-.|+.=+.. ---+.+|++.|++.| -||+++. +++|++.......|++.|+
T Consensus 125 ll~~a~~l~~~~~~v~d~~~~~L~~~G------~sd~eI~el~~~ia~~~~~nr~~~~lgv~pd~e~~ 186 (190)
T d2pfxa1 125 MLDFAAKMTRASAEIEEADREVLRSHG------FNDRDIWDIANVTGFFNMTNRVASATAMMPNAEYH 186 (190)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHHHHHTT------CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCGGGG
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4455544431 223789999999988 2677754 4556666655555555554
No 10
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=7.77 E-value=76 Score=21.12 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHH
Q 009939 130 MDRHKWRSLHHVLKRNSQDIKIYLDSMKELEEKAR 164 (522)
Q Consensus 130 mE~~K~~~l~~~l~r~~~~l~~~~~~i~~~e~~aR 164 (522)
|-+.|+ +++|+|+-..++.....+++.|-+|+
T Consensus 28 mtedkL---RRYLkRTv~eLdsVtaRLrEvEyRAg 59 (60)
T d1pzra_ 28 MTEEKL---RRYLKRTVTELDSVTARLREVEHRAG 59 (60)
T ss_dssp SHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555563 35566666677777778888887664
Done!