BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009940
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AD9|A Chain A, Crystal Structure Of Human Lactb2.
pdb|4AD9|B Chain B, Crystal Structure Of Human Lactb2.
pdb|4AD9|C Chain C, Crystal Structure Of Human Lactb2.
pdb|4AD9|D Chain D, Crystal Structure Of Human Lactb2.
pdb|4AD9|E Chain E, Crystal Structure Of Human Lactb2.
pdb|4AD9|F Chain F, Crystal Structure Of Human Lactb2
Length = 289
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 260 VFVTHHHRDHVDGLS-IIQKCNPDAILLAHE---NTMRRIGKDDWSLGYTSVSGSEDICV 315
+ VTH HRDH G+ I + N D + N R + Y + + I
Sbjct: 74 IVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKT 133
Query: 316 GGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKF 375
G L V+++PGHTD H+ALL N++ GD +G+G+ V + ++ DY S +
Sbjct: 134 EGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTVFE-----DLYDYMNSLKEL 188
Query: 376 LELSPHALIPMHGRVNLWPKHMLCGYLKNRRAREAAILQAIENGVE---TLFDIVANVYS 432
L++ + P HG V + + Y+ +R RE IL E T+ ++V +Y
Sbjct: 189 LKIKADIIYPGHGPVIHNAEAKIQQYISHRNIREQQILTLFRENFEKSFTVMELVKIIYK 248
Query: 433 EVPRSF 438
P +
Sbjct: 249 NTPENL 254
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 65/170 (38%), Gaps = 15/170 (8%)
Query: 232 ALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVD---------GLSIIQKCNPD 282
A +VDPG +E ++ +V AS + + +TH H DHV G+ +I D
Sbjct: 26 AALVDPGGDAEKIKQ--EVDASGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGPEKED 83
Query: 283 AILLAHENTMRRIGKDDWSLGYTS---VSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS 339
L R+ D T ++ + + VG L V+ PGHT GHV
Sbjct: 84 EFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDEQ 143
Query: 340 TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPH-ALIPMHG 388
+ LI GD G D G + K L L IP HG
Sbjct: 144 SQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHG 193
>pdb|2ZWR|A Chain A, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZWR|B Chain B, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZZI|A Chain A, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
pdb|2ZZI|B Chain B, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
Length = 207
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 12/175 (6%)
Query: 223 NHRFVAQGEA-LIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP 281
N V GE +++DPG E L + +P L + +TH H DHV ++ + +
Sbjct: 14 NAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIP--LAILLTHAHFDHVGAVAPLVEALD 71
Query: 282 DAILLAHENTMRRIGKD----DWSLGYTSVSGSEDICVGGQRL---TVVFSPGHTDGHVA 334
+ L + G D W L G RL V+ PGH+ GHVA
Sbjct: 72 LPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGHVA 131
Query: 335 LLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALI-PMHG 388
+ GD + +GS G + F S + L L P + P HG
Sbjct: 132 FYDPEGAQVFSGD-LLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHG 185
>pdb|2ZO4|A Chain A, Crystal Structure Of Metallo-Beta-Lactamase Family Protein
Ttha1429 From Thermus Thermophilus Hb8
Length = 317
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 310 SEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGD 347
E + V G+RL V+++PGH DGH A L+ GD
Sbjct: 153 GEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGD 190
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 229 QGEALIVDPGCRSEFHEELLKVVAS---LPRKLIVFVTHHHRDHVDGLSIIQKCNPDAIL 285
+G +IVDPG + +LK +A +P +F+THHH DHV G+ + + P +
Sbjct: 28 EGRCVIVDPGEAAP----VLKAIAEHKWMPEA--IFLTHHHHDHVGGVKELLQHFPQMTV 81
Query: 286 LAHENTMRRIGKDDWSLGYTSVSGSED-ICVGGQRLTVVFSPGHTDGHVALLHASTNSLI 344
T + G T + G D I V G++ T+ +PGHT GHV + S L
Sbjct: 82 YGPAETQDK--------GATHLVGDGDTIRVLGEKFTLFATPGHTLGHVC--YFSRPYLF 131
Query: 345 VGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALI 384
GD G L G + +QS K L LI
Sbjct: 132 CGDTLFSGGCGRL---FEGTPSQMYQSLMKINSLPDDTLI 168
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 230 GEALIVDPGCRSEFHEELLKVVASLPRK----LIVFVTHHHRDHVDGLSIIQKCNPDAIL 285
G +VDP E ++ SL R + THHH DH G ++ K A +
Sbjct: 23 GTVGVVDPS-------EAEPIIDSLKRSGRNLTYILNTHHHYDHTGG-NLELKDRYGAKV 74
Query: 286 LAHENTMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIV 345
+ RI D +L + G + V+ +PGHT GH++L + ++
Sbjct: 75 IGSAMDKDRIPGIDMAL-----KDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFT 129
Query: 346 GD 347
GD
Sbjct: 130 GD 131
>pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
Length = 245
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 81/222 (36%), Gaps = 25/222 (11%)
Query: 232 ALIVDPGCRSEFHEELLKVVASLPRKLIVFV-THHHRDHVDGLSIIQKCNPDAILLAHEN 290
AL++DP ++ + LK++ L KLI + TH H DHV G +++ P
Sbjct: 30 ALLIDPVDKTVDRD--LKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLP--------G 79
Query: 291 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALL------HASTNSLI 344
I K S + + + +G L V +PGHT G V +
Sbjct: 80 VKSVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAF 139
Query: 345 VGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHALIPMHGRVNLWPKHMLCGYLKN 404
GD + +G D G + Y + L LI +P H G+ +
Sbjct: 140 TGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLI--------YPAHDYKGFEVS 191
Query: 405 RRAREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNV 446
E + ET I++N+ P+ + +N+
Sbjct: 192 TVGEEMQHNPRLTKDKETFKTIMSNLNLSYPKMIDVAVPANM 233
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 47/190 (24%)
Query: 230 GEALIVDPGCRSEFH-----EELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAI 284
GEA ++DP E + E L++VA+L TH H D V G AI
Sbjct: 27 GEACVIDPARDVEPYLLTAKREGLRIVAALE-------THIHADFVSGAREXADRAGAAI 79
Query: 285 LLAHENTMRRIGKDDWSLGYTS------VSGSEDICVGGQRLTVVFSPGHTDGHVA-LLH 337
++ E G +W Y + +++ G R+ V +PGHT HV+ LL+
Sbjct: 80 CVSDE------GPPEWKSEYVKAYPHRLLKDGDELHFGNVRIVVXHTPGHTPEHVSYLLY 133
Query: 338 ASTNS------------LIVGDHCVGQGSAVLDITAGGNMTD------YFQSTYKFLELS 379
S + VGD VG+ +L+ AG + + F+S KF L
Sbjct: 134 DGKTSPDVPXALFSGDFVFVGD--VGRPD-LLERVAGESGSSEALARQXFRSLRKFEALP 190
Query: 380 PHA-LIPMHG 388
H ++P HG
Sbjct: 191 DHVQVLPAHG 200
>pdb|2NXA|A Chain A, Structure Of Zn-Dependent Metallo-Beta-Lactamase From
Bacillus Cereus R121h, C221d Double Mutant
pdb|2NYP|A Chain A, Structure Of Beta-Lactamase Ii From Bacillus Cereus.
R121h, C221d Doble Mutant With Two Zinc Ions
Length = 221
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 233 LIVDPGCRSEFHEELLKVVASLPRKLI--VFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290
++VD + +EL+++V +K + V +TH H DH+ G+ +++ A A
Sbjct: 47 VLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADHIGGIKTLKERGIKAHSTALTA 106
Query: 291 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHC 349
+ + + LG + ++ G ++ + GHT+ ++ + N L+ GD
Sbjct: 107 ELAKKNGYEEPLG--DLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGDLV 164
Query: 350 VGQGSAVLDITAGGNMTDYFQSTYKFLE--LSPHALIPMHGRV 390
+ L A + ++ S L+ + +A++P HG V
Sbjct: 165 KSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEV 207
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 306 SVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGG-- 363
V G+E+ +GG R ++++PGH H ++L + L GD + V+ T
Sbjct: 126 EVEGNEEFDLGGYRXRLIYTPGHARHHXSVL--VDDFLFTGDSAGAYFNGVVIPTTPPVI 183
Query: 364 NMTDYFQSTYKFLELSPHALIPMHG 388
+ Y +S + +EL P + HG
Sbjct: 184 DYKXYXESLKRQIELKPKVVGFAHG 208
>pdb|1P9E|A Chain A, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
pdb|1P9E|B Chain B, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
Length = 331
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 36/134 (26%)
Query: 233 LIVDPGCRSEFHEELLKVVASL------PRKLI-VFVTHHHRDHVDGLSIIQKCN-PDAI 284
++VD G F L ++ A+L P ++ +++TH H DHV GL + ++ P+A+
Sbjct: 109 VLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFPNAV 168
Query: 285 LLAHE--------NTMRRIGKDDWSLG-----------------YTSVSGSEDICVGGQR 319
+ A + T DD S G + SG+ D+ G
Sbjct: 169 VRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVPG--- 225
Query: 320 LTVVFSPGHTDGHV 333
+ + S GHT GH
Sbjct: 226 IKALASHGHTPGHT 239
>pdb|2A7M|A Chain A, 1.6 Angstrom Resolution Structure Of The Quorum-Quenching
N-Acyl Homoserine Lactone Hydrolase Of Bacillus
Thuringiensis
Length = 250
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
Query: 247 LLKVVASLPRKLIVFVTHH-HRDHVDGLS-------IIQKCNPDAILLAHENTMRRIGKD 298
+LK V P L+ ++ H H DH G I+Q+ +A L E I
Sbjct: 86 ILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILP- 144
Query: 299 DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLD 358
L Y + G ++ G Q L ++PGH+ GH +L + S GS +L
Sbjct: 145 --HLNYKIIEGDYEVVPGVQLL---YTPGHSPGHQSLFIETEQS----------GSVLLT 189
Query: 359 ITA 361
I A
Sbjct: 190 IDA 192
>pdb|2BR6|A Chain A, Crystal Structure Of Quorum-Quenching N-Acyl Homoserine
Lactone Lactonase
pdb|2BTN|A Chain A, Crystal Structure And Catalytic Mechanism Of The Quorum-
Quenching N-Acyl Homoserine Lactone Hydrolase
Length = 252
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
Query: 247 LLKVVASLPRKLIVFVTHH-HRDHVDGLS-------IIQKCNPDAILLAHENTMRRIGKD 298
+LK V P L+ ++ H H DH G I+Q+ +A L E I
Sbjct: 88 ILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILP- 146
Query: 299 DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLD 358
L Y + G ++ G Q L ++PGH+ GH +L + S GS +L
Sbjct: 147 --HLNYKIIEGDYEVVPGVQLL---YTPGHSPGHQSLFIKTEQS----------GSVLLT 191
Query: 359 ITA 361
I A
Sbjct: 192 IDA 194
>pdb|2P4Z|A Chain A, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
pdb|2P4Z|B Chain B, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
Length = 284
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 210 IVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDH 269
+VFA + V++ + + ++VD G F + + + R V +TH H DH
Sbjct: 22 VVFARNFVAEHGLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDH 81
Query: 270 VDGLSIIQKCNPDAILLAHENTMRR 294
+ GL + + NP+ + H+ + +
Sbjct: 82 IGGLKGLLERNPEVKIYTHKEILNK 106
>pdb|3DHA|A Chain A, An Ultral High Resolution Structure Of N-Acyl Homoserine
Lactone Hydrolase With The Product
N-Hexanoyl-L-Homoserine Bound At An Alternative Site
pdb|3DHB|A Chain A, 1.4 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound
At The Catalytic Metal Center
pdb|3DHC|A Chain A, 1.3 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homocysteine
Bound To The Catalytic Metal Center
Length = 254
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
Query: 247 LLKVVASLPRKLIVFVTHH-HRDHVDGLS-------IIQKCNPDAILLAHENTMRRIGKD 298
+LK V P L+ ++ H H DH G I+Q+ +A L E I
Sbjct: 90 ILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILP- 148
Query: 299 DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLD 358
L Y + G ++ G Q L ++PGH+ GH +L + S GS +L
Sbjct: 149 --HLNYKIIEGDYEVVPGVQLL---YTPGHSPGHQSLFIETEQS----------GSVLLT 193
Query: 359 ITA 361
I A
Sbjct: 194 IDA 196
>pdb|3KL7|A Chain A, Crystal Structure Of Putative Metal-dependent Hydrolase
(yp_001302908.1) From Parabacteroides Distasonis Atcc
8503 At 2.30 A Resolution
Length = 235
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 252 ASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRI--------GKDDWSLG 303
+ P+ I+ +TH H DH+D +I D ++A+EN+ +++ G D S+
Sbjct: 61 TTFPKADIILITHEHGDHLDPKAIQAVEKSDTEIIANENSQKKLGKGKVLKNGDTDTSIS 120
Query: 304 YTSVSG--SEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGD 347
Y + + + G + + P H D L I GD
Sbjct: 121 YXKIEAVPAYNTTPGRDK----YHPRHRDNGYILTFDGLRVYIAGD 162
>pdb|1SML|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia
pdb|2AIO|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia Complexed With Hydrolyzed Moxalactam
pdb|2FM6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FM6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FU6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU7|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU7|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU8|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU8|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU9|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2FU9|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2GFJ|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFJ|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFK|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2GFK|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2H6A|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2H6A|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2HB9|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 3)
pdb|2QDT|A Chain A, Structural Basis For The Broad-Spectrum Inhibition Of
Metallo-{beta}- Lactamases: L1- Is38 Complex
Length = 269
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 248 LKVVASLPRKL-IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENT--MRRIGKDDWSLG- 303
+K PR L ++ ++H H DH ++ +++ + E+ + R G DD G
Sbjct: 67 MKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGD 126
Query: 304 ---YTSVSG------SEDICVGGQRLTVVFSPGHTDGHVA 334
Y + E I VGG T F GHT G A
Sbjct: 127 GITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTA 166
>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
Complex With Mercaptoacetic Acid
Length = 262
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 260 VFVTHHHRDHVDGLSIIQKCNPDAILLAHENT-MRRIG---KDDWSLGYTS--------- 306
+ TH H DH G+S +QK +L N R G K D G S
Sbjct: 68 ILSTHSHEDHAGGISAMQKLTGATVLAGAANVDTLRTGVSPKSDPQFGSLSNFPGSAKVR 127
Query: 307 -VSGSEDICVGGQRLTVVFSPGHTDGHV 333
V+ E + +G + +PGHT+G +
Sbjct: 128 AVADGELVKLGPLAVKAHATPGHTEGGI 155
>pdb|1Z1N|X Chain X, Crystal Structure Of The Sixteen Heme Cytochrome From
Desulfovibrio Gigas
Length = 560
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 140 STQSCINCLAEVKPSTDRVGPLVVIGLLNDLVQ--WRKWKVPPTLSYQEYPPGVILVPMQ 197
S +SC+NC + + GP++ +G Q W+K P L ++ P +LV
Sbjct: 228 SHESCVNCHLSTRKAQTESGPVLCVGCHTAEAQAAWKKTAETPRL-FRGQPDATLLV-AG 285
Query: 198 SRTAKPFLTTNLIVFAPDSVSDD 220
+ TA + N P V+ D
Sbjct: 286 AATANGTVDVNWAAAGPGPVAFD 308
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 29/120 (24%)
Query: 230 GEALIVDP-----GCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGL-SIIQKCNPDA 283
GEA+I+DP EE L + + TH H D G+ + K N +
Sbjct: 48 GEAMIIDPIRDLSSYIRVADEEGLTITHAAE-------THIHADFASGIRDVAIKLNANI 100
Query: 284 ILLAHENTMRRIGKDDWSLGYTS-------VSGSEDICVGGQRLTVVFSPGHTDGHVALL 336
+ G+ D +LGY + V ++DI VG +L V+ +PGHT ++ L
Sbjct: 101 YVS---------GESDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFL 151
>pdb|3I14|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus: Residue Cys168 Partially Oxidized
Length = 216
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 233 LIVDPGCRSEFHEELLKVVASLPRKLI--VFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290
++VD + +EL+++V +K + V +TH H D + G+ +++ A A
Sbjct: 41 VLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTA 100
Query: 291 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHC 349
+ + + LG + ++ G ++ + GHT+ ++ + N ++VG C
Sbjct: 101 ELAKKNGYEEPLG--DLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYN-ILVGGXC 157
Query: 350 VGQGSAVLDITAGGNMTDYF-----QSTYKFLE--LSPHALIPMHGRV 390
+ + ++ D+ GN+ D + S L+ + +A++P HG V
Sbjct: 158 LVKSTSAKDL---GNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEV 202
>pdb|2D0A|A Chain A, Crystal Structure Of Bst-Rnase Hiii
pdb|2D0B|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mg2+
pdb|2D0C|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mn2+
Length = 310
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 118 TVYIMGKLL-DGNQILQEGCKWMSTQSCINCLAEVKPS---TDRVGPLVVIG 165
T Y GK+L G QE KW+S S N A+ +PS ++G L IG
Sbjct: 44 TAYRSGKVLFQGKAAEQEAAKWISGASASNETADHQPSALAAHQLGSLSAIG 95
>pdb|3I0V|A Chain A, Bacillus Cereus Metallo-beta-lactamase: Apo Form
Length = 212
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 233 LIVDPGCRSEFHEELLKVVASLPRKLI--VFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290
++VD + +EL+++V +K + V +TH H D + G+ +++ A A
Sbjct: 37 VLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTA 96
Query: 291 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHC 349
+ + + LG + ++ G ++ + GHT+ ++ + N ++VG C
Sbjct: 97 ELAKKNGYEEPLG--DLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYN-ILVGGXC 153
Query: 350 VGQGSAVLDITAGGNMTDYF-----QSTYKFLE--LSPHALIPMHGRV 390
+ + ++ D+ GN+ D + S L+ + +A++P HG V
Sbjct: 154 LVKSTSAKDL---GNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEV 198
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 259 IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENT--MRRIGKDDWSLGYTSVS-------- 308
I+ ++H H DH G +I++ ++ E+ + GK D+ S +
Sbjct: 66 ILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVD 125
Query: 309 ----GSEDICVGGQRLTVVFSPGHTDGHVALL-----HAST-NSLIVGDHCVGQGSAVLD 358
E + +GG LT +PGHT G H ++I+G V G+ ++D
Sbjct: 126 KVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGAKLVD 185
Query: 359 ITAGGNMTDYFQSTYKFLE 377
+ + ++ + K LE
Sbjct: 186 NITYPKIAEDYKHSIKVLE 204
>pdb|2NZE|A Chain A, Structure Of Beta-lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group P3121.
pdb|2NZE|B Chain B, Structure Of Beta-lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group P3121
Length = 222
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 233 LIVDPGCRSEFHEELLKVVASLPRKLI--VFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290
++VD + +EL+++V +K + V +TH H DH+ G+ +++ A A
Sbjct: 48 VLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADHIGGIKTLKERGIKAHSTALTA 107
Query: 291 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHC 349
+ + + LG + ++ G ++ + GHT+ ++ + N L+ G
Sbjct: 108 ELAKKNGYEEPLG--DLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGSLV 165
Query: 350 VGQGSAVLDITAGGNMTDYFQSTYKFLE--LSPHALIPMHGRV 390
+ L A + ++ S L+ + +A++P HG V
Sbjct: 166 KSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEV 208
>pdb|2NZF|A Chain A, Structure Of Beta-Lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group C2
Length = 221
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 233 LIVDPGCRSEFHEELLKVVASLPRKLI--VFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290
++VD + +EL+++V +K + V +TH H DH+ G+ +++ A A
Sbjct: 47 VLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADHIGGIKTLKERGIKAHSTALTA 106
Query: 291 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHC 349
+ + + LG + ++ G ++ + GHT+ ++ + N L+ G
Sbjct: 107 ELAKKNGYEEPLG--DLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGSLV 164
Query: 350 VGQGSAVLDITAGGNMTDYFQSTYKFLE--LSPHALIPMHGRV 390
+ L A + ++ S L+ + +A++P HG V
Sbjct: 165 KSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEV 207
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 327 GHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA 382
G T+G + +L + I+G H G G+ V D+ A + +F+++ + L +PHA
Sbjct: 380 GETEGFIKVLAHAKTDRILGVH--GIGARVGDVLAEAALALFFKASAEDLGRAPHA 433
>pdb|2Q5T|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae
pdb|3Q9O|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae In Complex
With Nad
Length = 642
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 226 FVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP 281
++ + A+I G + ++EL +L R+ VFV +H +HV +I+ + P
Sbjct: 429 YLPENRAVITPQGVTNWTYQELEATHQALTREGYVFVGYHGTNHVAAQTIVNRIAP 484
>pdb|3KNR|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNS|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
Length = 227
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 233 LIVDPGCRSEFHEELLKVVASLPRKLI--VFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290
++VD + +EL+++V +K + V +TH H D + G+ +++ A A
Sbjct: 53 VLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTA 112
Query: 291 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHC 349
+ + + LG + ++ G ++ + GHT+ ++ + N L+ GD
Sbjct: 113 ELAKKNGYEEPLG--DLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGDLV 170
Query: 350 VGQGSAVLDITAGGNMTDYFQSTYKFLE--LSPHALIPMHGRV 390
+ L A + ++ S L+ + +A++P HG V
Sbjct: 171 KSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEV 213
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 259 IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENT--MRRIGKDDWSLGYTSVS-------- 308
I+ ++H H DH G +I++ ++ E+ + GK D+ S +
Sbjct: 66 ILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVD 125
Query: 309 ----GSEDICVGGQRLTVVFSPGHTDG 331
E + +GG LT +PGHT G
Sbjct: 126 KVLHDGERVELGGTVLTAHLTPGHTRG 152
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 231 EALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290
EA IVDP + + K L V THHH DH G + L+ E+
Sbjct: 24 EAAIVDPVQPQKVVDAARKHGVKL---TTVLTTHHHWDHAGG---------NEKLVKLES 71
Query: 291 TMRRIGKDDWSLGYT-SVSGSEDICVGGQRLTVVFSPGHTDGHV 333
++ G DD T ++ + VG + + +P HT GH+
Sbjct: 72 GLKVYGGDDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHI 115
>pdb|2QJS|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
Length = 269
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 248 LKVVASLPRKL-IVFVTHHHRDHVDGLSIIQKCNPDAILLAHENT--MRRIGKDDWSLG- 303
+K PR L ++ ++H H +H ++ +++ + E+ + R G DD G
Sbjct: 67 MKARGVTPRDLRLILLSHAHANHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGD 126
Query: 304 ---YTSVSG------SEDICVGGQRLTVVFSPGHTDGHVA 334
Y + E I VGG T F GHT G A
Sbjct: 127 GITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTA 166
>pdb|1BC2|A Chain A, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BC2|B Chain B, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BVT|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9
pdb|1MQO|A Chain A, Metallo-Beta-Lactamase Bcii Cd Substituted From Bacillus
Cereus At 1.35 Angstroms Resolution
pdb|3I11|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus
pdb|3I13|A Chain A, Bacillus Cereus Zn-dependent Metallo-beta-lactamase At Ph
5.8
Length = 227
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 233 LIVDPGCRSEFHEELLKVVASLPRKLI--VFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290
++VD + +EL+++V +K + V +TH H D + G+ +++ A A
Sbjct: 53 VLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTA 112
Query: 291 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHC 349
+ + + LG + ++ G ++ + GHT+ ++ + N L+ G C
Sbjct: 113 ELAKKNGYEEPLG--DLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGG--C 168
Query: 350 VGQGSAVLDITAGGNMTDYF-----QSTYKFLE--LSPHALIPMHGRV 390
+ + ++ D+ GN+ D + S L+ + +A++P HG V
Sbjct: 169 LVKSTSAKDL---GNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEV 213
>pdb|1BMC|A Chain A, Structure Of A Zinc Metallo-Beta-Lactamase From Bacillus
Cereus
Length = 221
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 233 LIVDPGCRSEFHEELLKVVASLPRKLI--VFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290
++VD + +EL+++V +K + V +TH H D + G+ +++ A A
Sbjct: 47 VLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTA 106
Query: 291 TMRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVF-SPGHTDGHVALLHASTNSLIVGDHC 349
+ + + LG + ++ G ++ + GHT+ ++ + N L+ G C
Sbjct: 107 ELAKKNGYEEPLG--DLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGG--C 162
Query: 350 VGQGSAVLDITAGGNMTDYF-----QSTYKFLE--LSPHALIPMHGRV 390
+ + ++ D+ GN+ D + S L+ + +A++P HG V
Sbjct: 163 LVKSTSAKDL---GNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEV 207
>pdb|3PGM|A Chain A, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
Resolution
pdb|3PGM|B Chain B, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
Resolution
Length = 244
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 380 PHALIPMHGRVNLWPKHMLCGYL--------KNRRAREAAILQAIENGVETLFDIV---- 427
P ++ HG+ K++ G++ + AR +L+ E GV L D
Sbjct: 1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLK--EKGVNVLVDYTSKLS 58
Query: 428 -----ANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSILKF 468
AN+ E WIP + RL+ H D K ++ KF
Sbjct: 59 RAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAQTLKKF 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,409,206
Number of Sequences: 62578
Number of extensions: 703735
Number of successful extensions: 1660
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1640
Number of HSP's gapped (non-prelim): 42
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)