Query 009940
Match_columns 522
No_of_seqs 479 out of 2991
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 19:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02398 hydroxyacylglutathion 100.0 9.3E-27 2E-31 237.3 22.0 178 230-420 98-279 (329)
2 TIGR03413 GSH_gloB hydroxyacyl 99.9 4.5E-26 9.7E-31 225.9 20.8 176 230-420 20-199 (248)
3 PLN02469 hydroxyacylglutathion 99.9 1.2E-25 2.6E-30 223.6 22.2 151 230-394 23-181 (258)
4 PRK10241 hydroxyacylglutathion 99.9 2E-25 4.2E-30 221.6 18.9 175 230-420 22-200 (251)
5 PRK11921 metallo-beta-lactamas 99.9 4.9E-24 1.1E-28 225.1 23.5 212 185-403 1-240 (394)
6 PLN02962 hydroxyacylglutathion 99.9 4.4E-24 9.6E-29 211.1 19.0 149 230-389 36-193 (251)
7 PRK05452 anaerobic nitric oxid 99.9 7.9E-24 1.7E-28 227.8 20.6 216 185-407 3-248 (479)
8 KOG0813 Glyoxylase [General fu 99.9 1.2E-23 2.5E-28 205.2 15.4 173 232-417 27-205 (265)
9 COG0491 GloB Zn-dependent hydr 99.9 3E-20 6.6E-25 181.7 20.9 158 231-389 36-212 (252)
10 COG0426 FpaA Uncharacterized f 99.8 2.3E-19 4.9E-24 183.9 21.7 215 183-406 3-242 (388)
11 smart00849 Lactamase_B Metallo 99.8 1.4E-18 3.1E-23 162.0 19.7 155 230-387 15-183 (183)
12 PF00753 Lactamase_B: Metallo- 99.8 8.5E-19 1.8E-23 163.4 13.7 158 230-387 15-194 (194)
13 PF14597 Lactamase_B_5: Metall 99.7 2.1E-17 4.6E-22 150.7 14.7 156 230-399 32-193 (199)
14 KOG0814 Glyoxylase [General fu 99.7 7.5E-18 1.6E-22 152.0 10.7 158 222-390 20-184 (237)
15 COG2015 Alkyl sulfatase and re 99.6 8.1E-15 1.8E-19 150.5 18.4 314 144-518 81-460 (655)
16 TIGR00649 MG423 conserved hypo 99.4 1.8E-12 3.9E-17 138.4 16.2 123 229-351 22-162 (422)
17 PRK11539 ComEC family competen 99.2 2E-10 4.3E-15 130.9 18.5 149 220-393 509-672 (755)
18 PRK00685 metal-dependent hydro 99.2 7.4E-11 1.6E-15 115.2 12.3 156 230-391 17-196 (228)
19 COG1237 Metal-dependent hydrol 99.1 1.8E-09 3.9E-14 105.0 16.5 163 222-390 21-233 (259)
20 COG0595 mRNA degradation ribon 99.1 1.5E-09 3.3E-14 117.7 17.6 128 225-352 26-171 (555)
21 TIGR00361 ComEC_Rec2 DNA inter 99.1 2.3E-09 5E-14 120.7 18.8 153 220-393 448-614 (662)
22 PRK02113 putative hydrolase; P 99.1 2.4E-09 5.1E-14 106.4 15.0 113 230-349 44-171 (252)
23 TIGR03675 arCOG00543 arCOG0054 99.1 6.6E-10 1.4E-14 123.4 11.7 128 222-350 187-349 (630)
24 PRK11244 phnP carbon-phosphoru 99.1 2.5E-09 5.5E-14 106.2 14.5 113 229-349 45-164 (250)
25 TIGR02649 true_RNase_BN ribonu 99.0 1.3E-09 2.7E-14 111.5 11.8 105 231-338 31-149 (303)
26 TIGR03307 PhnP phosphonate met 99.0 3.1E-09 6.7E-14 104.7 13.3 113 229-349 35-154 (238)
27 TIGR02651 RNase_Z ribonuclease 99.0 1.3E-09 2.8E-14 111.0 10.8 106 230-338 27-147 (299)
28 TIGR02108 PQQ_syn_pqqB coenzym 98.9 5E-09 1.1E-13 106.9 11.4 114 232-348 50-199 (302)
29 PRK05184 pyrroloquinoline quin 98.9 7.5E-09 1.6E-13 105.7 12.0 114 232-348 51-199 (302)
30 PRK04286 hypothetical protein; 98.9 3.1E-08 6.6E-13 101.0 15.4 129 220-349 12-187 (298)
31 COG2333 ComEC Predicted hydrol 98.9 2.1E-08 4.6E-13 101.0 13.7 159 220-394 52-223 (293)
32 PF12706 Lactamase_B_2: Beta-l 98.9 2.2E-09 4.8E-14 101.5 5.3 116 232-350 2-140 (194)
33 PRK02126 ribonuclease Z; Provi 98.9 1.9E-08 4E-13 104.0 12.5 114 206-338 15-172 (334)
34 PRK11709 putative L-ascorbate 98.8 2.4E-08 5.2E-13 103.8 12.7 156 253-408 106-306 (355)
35 COG1236 YSH1 Predicted exonucl 98.7 1.5E-08 3.3E-13 108.0 7.1 129 220-349 13-165 (427)
36 KOG4736 Uncharacterized conser 98.7 2.9E-08 6.2E-13 97.7 8.1 148 229-392 103-259 (302)
37 COG1782 Predicted metal-depend 98.5 7.6E-07 1.6E-11 93.2 11.8 129 222-351 193-356 (637)
38 PRK00055 ribonuclease Z; Revie 98.2 1.4E-06 3.1E-11 86.8 6.3 64 230-295 29-98 (270)
39 PF13483 Lactamase_B_3: Beta-l 98.2 5.2E-06 1.1E-10 76.8 8.6 93 230-350 16-116 (163)
40 COG2220 Predicted Zn-dependent 98.1 3.7E-05 8E-10 76.7 13.9 160 230-389 23-213 (258)
41 PF00293 NUDIX: NUDIX domain; 98.1 2.8E-06 6E-11 75.0 4.4 111 7-150 6-122 (134)
42 TIGR02650 RNase_Z_T_toga ribon 98.0 1.6E-05 3.4E-10 79.4 8.6 102 222-329 10-134 (277)
43 COG2248 Predicted hydrolase (m 97.7 0.0012 2.6E-08 64.2 15.4 124 225-348 18-185 (304)
44 cd04664 Nudix_Hydrolase_7 Memb 97.7 0.00011 2.3E-09 65.1 7.7 111 6-148 4-119 (129)
45 KOG1136 Predicted cleavage and 97.7 0.00012 2.7E-09 73.3 7.7 129 220-349 16-180 (501)
46 cd04666 Nudix_Hydrolase_9 Memb 97.7 0.00012 2.5E-09 64.7 6.8 98 16-149 14-117 (122)
47 COG1234 ElaC Metal-dependent h 97.7 0.00026 5.6E-09 72.1 10.1 65 229-295 28-98 (292)
48 cd04691 Nudix_Hydrolase_32 Mem 97.6 0.00013 2.9E-09 63.6 6.9 102 7-147 5-108 (117)
49 cd03430 GDPMH GDP-mannose glyc 97.6 0.00016 3.5E-09 65.6 7.3 108 6-146 15-131 (144)
50 cd03426 CoAse Coenzyme A pyrop 97.6 0.00012 2.7E-09 67.4 5.9 108 6-146 5-117 (157)
51 cd03673 Ap6A_hydrolase Diadeno 97.6 0.00028 6.1E-09 62.1 7.9 107 8-149 6-118 (131)
52 cd03428 Ap4A_hydrolase_human_l 97.5 0.00022 4.8E-09 63.0 6.8 104 9-149 9-117 (130)
53 cd04700 DR1025_like DR1025 fro 97.5 0.0002 4.4E-09 64.8 6.6 106 8-150 18-128 (142)
54 cd04679 Nudix_Hydrolase_20 Mem 97.5 0.00026 5.7E-09 62.2 6.9 106 7-149 6-117 (125)
55 cd04694 Nudix_Hydrolase_35 Mem 97.5 0.00041 8.9E-09 63.0 7.8 114 5-149 3-133 (143)
56 PRK15434 GDP-mannose mannosyl 97.5 0.00028 6.2E-09 65.2 6.8 108 6-147 20-137 (159)
57 cd04683 Nudix_Hydrolase_24 Mem 97.5 0.00027 5.9E-09 61.5 6.4 100 18-149 12-116 (120)
58 cd03427 MTH1 MutT homolog-1 (M 97.5 0.00027 5.8E-09 63.1 6.3 95 18-146 13-110 (137)
59 cd04696 Nudix_Hydrolase_37 Mem 97.4 0.00045 9.7E-09 60.8 7.5 106 6-146 5-113 (125)
60 cd04684 Nudix_Hydrolase_25 Con 97.4 0.00035 7.6E-09 61.2 6.7 99 17-146 11-116 (128)
61 cd04693 Nudix_Hydrolase_34 Mem 97.4 0.00049 1.1E-08 60.7 7.6 109 8-152 5-118 (127)
62 KOG1135 mRNA cleavage and poly 97.4 0.0016 3.5E-08 71.0 12.3 127 221-348 15-172 (764)
63 cd04661 MRP_L46 Mitochondrial 97.4 0.00052 1.1E-08 61.3 7.1 103 15-149 11-122 (132)
64 cd04695 Nudix_Hydrolase_36 Mem 97.4 0.00051 1.1E-08 61.1 7.0 99 15-148 12-115 (131)
65 cd03672 Dcp2p mRNA decapping e 97.3 0.0005 1.1E-08 62.5 6.3 105 7-151 5-115 (145)
66 cd03675 Nudix_Hydrolase_2 Cont 97.3 0.00084 1.8E-08 59.7 7.5 108 6-151 3-115 (134)
67 COG1235 PhnP Metal-dependent h 97.3 0.0002 4.4E-09 72.0 3.9 56 230-290 40-95 (269)
68 cd03424 ADPRase_NUDT5 ADP-ribo 97.3 0.0008 1.7E-08 60.1 7.3 109 7-152 6-120 (137)
69 PRK09438 nudB dihydroneopterin 97.2 0.001 2.2E-08 60.4 7.4 104 6-148 10-130 (148)
70 cd04678 Nudix_Hydrolase_19 Mem 97.2 0.0012 2.6E-08 58.3 7.1 105 6-146 5-116 (129)
71 cd04687 Nudix_Hydrolase_28 Mem 97.1 0.0012 2.6E-08 58.3 6.8 106 6-146 4-120 (128)
72 cd04690 Nudix_Hydrolase_31 Mem 97.1 0.001 2.2E-08 57.7 6.2 97 15-146 11-109 (118)
73 cd02885 IPP_Isomerase Isopente 97.1 0.0016 3.4E-08 60.5 7.8 112 7-151 34-152 (165)
74 cd04682 Nudix_Hydrolase_23 Mem 97.1 0.0014 3.1E-08 57.3 7.1 96 18-147 13-114 (122)
75 cd04673 Nudix_Hydrolase_15 Mem 97.1 0.0013 2.9E-08 57.0 6.6 99 18-147 12-114 (122)
76 cd04697 Nudix_Hydrolase_38 Mem 97.1 0.0022 4.8E-08 56.6 7.9 105 9-149 6-114 (126)
77 cd04688 Nudix_Hydrolase_29 Mem 97.1 0.0014 3.1E-08 57.6 6.6 103 4-145 2-116 (126)
78 cd03671 Ap4A_hydrolase_plant_l 97.1 0.0014 3E-08 59.6 6.6 107 8-150 8-134 (147)
79 PRK15472 nucleoside triphospha 97.0 0.0014 3E-08 59.0 6.3 98 18-146 16-124 (141)
80 PRK10546 pyrimidine (deoxy)nuc 97.0 0.002 4.4E-08 57.2 7.2 104 5-146 6-111 (135)
81 TIGR00052 nudix-type nucleosid 97.0 0.0011 2.4E-08 62.9 5.6 113 8-151 49-169 (185)
82 cd04692 Nudix_Hydrolase_33 Mem 97.0 0.0028 6E-08 57.3 7.9 112 10-152 9-132 (144)
83 PRK00714 RNA pyrophosphohydrol 97.0 0.0012 2.7E-08 60.7 5.6 111 7-152 12-140 (156)
84 KOG1137 mRNA cleavage and poly 97.0 0.00072 1.6E-08 72.0 4.3 127 220-349 26-183 (668)
85 cd04681 Nudix_Hydrolase_22 Mem 97.0 0.0016 3.4E-08 57.5 5.9 103 6-144 4-112 (130)
86 cd04699 Nudix_Hydrolase_39 Mem 96.9 0.0028 6E-08 55.5 6.9 105 6-144 4-111 (129)
87 cd04672 Nudix_Hydrolase_14 Mem 96.8 0.0029 6.3E-08 55.4 6.6 93 18-144 14-109 (123)
88 cd04680 Nudix_Hydrolase_21 Mem 96.8 0.0038 8.2E-08 54.1 6.8 99 7-146 4-107 (120)
89 cd04669 Nudix_Hydrolase_11 Mem 96.7 0.0028 6.1E-08 55.5 5.7 98 5-145 2-112 (121)
90 cd03425 MutT_pyrophosphohydrol 96.7 0.005 1.1E-07 53.1 7.3 94 17-146 13-109 (124)
91 PRK15393 NUDIX hydrolase YfcD; 96.7 0.0053 1.2E-07 57.9 7.8 111 7-153 41-155 (180)
92 cd04671 Nudix_Hydrolase_13 Mem 96.7 0.0044 9.6E-08 54.6 6.8 100 4-144 1-107 (123)
93 cd04686 Nudix_Hydrolase_27 Mem 96.7 0.0039 8.4E-08 55.5 6.4 94 18-147 12-119 (131)
94 cd04677 Nudix_Hydrolase_18 Mem 96.7 0.0027 5.8E-08 56.1 5.3 106 8-150 12-125 (132)
95 PRK10776 nucleoside triphospha 96.7 0.0056 1.2E-07 53.5 7.2 101 7-145 8-111 (129)
96 cd03429 NADH_pyrophosphatase N 96.7 0.0042 9.1E-08 55.3 6.4 99 8-147 5-107 (131)
97 cd04676 Nudix_Hydrolase_17 Mem 96.7 0.0037 8E-08 54.5 5.9 105 5-146 4-116 (129)
98 cd04511 Nudix_Hydrolase_4 Memb 96.6 0.0069 1.5E-07 53.7 7.2 90 17-144 24-116 (130)
99 TIGR02150 IPP_isom_1 isopenten 96.6 0.0081 1.7E-07 55.4 7.8 110 8-152 32-147 (158)
100 cd04670 Nudix_Hydrolase_12 Mem 96.6 0.0058 1.3E-07 53.7 6.5 102 6-146 5-112 (127)
101 PF02112 PDEase_II: cAMP phosp 96.6 0.012 2.5E-07 60.9 9.6 43 256-298 79-126 (335)
102 PRK03759 isopentenyl-diphospha 96.5 0.0086 1.9E-07 56.7 7.9 112 8-152 39-157 (184)
103 cd02883 Nudix_Hydrolase Nudix 96.5 0.0062 1.3E-07 52.0 6.2 103 7-146 4-111 (123)
104 PRK05379 bifunctional nicotina 96.4 0.0072 1.6E-07 62.9 7.2 98 18-146 215-321 (340)
105 PRK10729 nudF ADP-ribose pyrop 96.4 0.01 2.2E-07 57.1 7.4 104 17-150 62-174 (202)
106 cd03674 Nudix_Hydrolase_1 Memb 96.3 0.014 3E-07 52.4 7.2 103 8-146 7-122 (138)
107 KOG1361 Predicted hydrolase in 96.2 0.0077 1.7E-07 64.3 6.1 90 256-349 112-206 (481)
108 PLN02325 nudix hydrolase 96.1 0.019 4.1E-07 52.1 7.1 93 18-143 21-121 (144)
109 cd04689 Nudix_Hydrolase_30 Mem 96.1 0.019 4E-07 50.3 6.8 99 5-143 3-110 (125)
110 TIGR00586 mutt mutator mutT pr 96.0 0.02 4.4E-07 50.0 7.0 98 8-143 9-109 (128)
111 PRK10707 putative NUDIX hydrol 96.0 0.012 2.7E-07 56.0 5.8 99 16-147 43-146 (190)
112 cd03676 Nudix_hydrolase_3 Memb 95.8 0.032 6.9E-07 52.5 7.7 110 10-150 41-161 (180)
113 PF14234 DUF4336: Domain of un 95.4 0.12 2.6E-06 52.1 10.4 122 230-352 30-162 (285)
114 PRK11762 nudE adenosine nucleo 95.4 0.06 1.3E-06 50.9 8.0 101 17-152 59-164 (185)
115 cd04667 Nudix_Hydrolase_10 Mem 95.3 0.047 1E-06 46.9 6.2 85 18-146 12-100 (112)
116 PRK15009 GDP-mannose pyrophosp 95.1 0.075 1.6E-06 50.7 7.5 114 7-151 49-170 (191)
117 cd04685 Nudix_Hydrolase_26 Mem 94.8 0.085 1.8E-06 47.2 6.7 98 18-146 13-122 (133)
118 PRK00241 nudC NADH pyrophospha 94.8 0.055 1.2E-06 54.0 6.0 90 16-144 142-235 (256)
119 PRK08999 hypothetical protein; 94.6 0.088 1.9E-06 53.9 7.2 100 6-143 8-110 (312)
120 PLN02709 nudix hydrolase 94.5 0.11 2.4E-06 50.6 7.0 98 15-146 49-154 (222)
121 cd04662 Nudix_Hydrolase_5 Memb 94.5 0.096 2.1E-06 46.5 6.0 96 15-140 13-125 (126)
122 cd03670 ADPRase_NUDT9 ADP-ribo 94.4 0.12 2.5E-06 49.1 6.9 104 8-145 40-169 (186)
123 cd04665 Nudix_Hydrolase_8 Memb 94.0 0.11 2.3E-06 45.6 5.4 87 18-144 12-102 (118)
124 KOG3798 Predicted Zn-dependent 93.7 0.23 5E-06 48.6 7.4 99 250-348 126-239 (343)
125 cd04674 Nudix_Hydrolase_16 Mem 93.6 0.099 2.2E-06 45.8 4.4 91 18-144 16-112 (118)
126 COG1051 ADP-ribose pyrophospha 92.9 0.28 6.1E-06 44.6 6.4 94 18-146 22-121 (145)
127 cd03431 DNA_Glycosylase_C DNA 92.4 0.56 1.2E-05 39.9 7.4 29 114-143 73-101 (118)
128 cd04663 Nudix_Hydrolase_6 Memb 91.2 0.33 7.2E-06 43.1 4.7 103 5-146 2-115 (126)
129 KOG2121 Predicted metal-depend 90.7 0.16 3.4E-06 56.6 2.5 47 231-278 472-523 (746)
130 COG5212 PDE1 Low-affinity cAMP 89.7 0.48 1E-05 47.0 4.6 92 256-348 112-232 (356)
131 PLN03143 nudix hydrolase; Prov 89.4 0.92 2E-05 46.1 6.7 102 18-151 144-269 (291)
132 PLN02791 Nudix hydrolase homol 89.0 0.95 2.1E-05 51.8 7.1 110 10-150 39-161 (770)
133 PF13691 Lactamase_B_4: tRNase 88.6 1.2 2.6E-05 34.5 5.3 42 229-272 20-63 (63)
134 PLN02552 isopentenyl-diphospha 84.9 4.4 9.5E-05 40.3 8.4 74 78-151 118-207 (247)
135 PF01022 HTH_5: Bacterial regu 84.3 1.7 3.6E-05 31.3 3.9 41 411-460 6-46 (47)
136 PHA02943 hypothetical protein; 81.8 6.5 0.00014 35.8 7.3 51 403-462 7-57 (165)
137 PF14815 NUDIX_4: NUDIX domain 80.4 1.2 2.7E-05 38.2 2.3 88 18-143 10-99 (114)
138 KOG3592 Microtubule-associated 79.9 1.9 4.2E-05 48.0 4.0 65 208-278 39-103 (934)
139 PF04703 FaeA: FaeA-like prote 77.7 3.2 7E-05 32.0 3.6 43 411-462 4-48 (62)
140 TIGR02705 nudix_YtkD nucleosid 76.2 10 0.00022 34.9 7.1 100 18-157 36-137 (156)
141 PF01726 LexA_DNA_bind: LexA D 70.4 9 0.00019 29.8 4.5 47 407-462 6-59 (65)
142 PF12840 HTH_20: Helix-turn-he 70.3 9.6 0.00021 28.8 4.7 43 411-462 14-57 (61)
143 PF14863 Alkyl_sulf_dimr: Alky 67.3 7.5 0.00016 35.2 4.0 48 471-518 26-78 (141)
144 PF05402 PqqD: Coenzyme PQQ sy 66.7 16 0.00035 28.0 5.4 51 408-460 18-68 (68)
145 PF03965 Penicillinase_R: Peni 65.8 14 0.0003 31.9 5.3 56 408-468 4-60 (115)
146 PF08220 HTH_DeoR: DeoR-like h 65.0 12 0.00025 28.2 4.1 48 408-464 1-49 (57)
147 COG3682 Predicted transcriptio 64.8 17 0.00037 32.1 5.5 61 408-473 7-68 (123)
148 PF05584 Sulfolobus_pRN: Sulfo 64.7 14 0.0003 29.4 4.5 56 409-473 7-65 (72)
149 smart00550 Zalpha Z-DNA-bindin 63.4 18 0.00038 28.2 5.0 52 409-469 8-63 (68)
150 COG0494 MutT NTP pyrophosphohy 62.2 29 0.00062 29.6 6.8 98 17-147 24-134 (161)
151 PF13412 HTH_24: Winged helix- 60.0 30 0.00066 24.5 5.4 43 409-460 5-48 (48)
152 TIGR03859 PQQ_PqqD coenzyme PQ 58.0 27 0.00058 28.3 5.4 49 409-460 33-81 (81)
153 PF01978 TrmB: Sugar-specific 57.4 18 0.00039 27.9 4.1 50 407-465 8-58 (68)
154 PF03551 PadR: Transcriptional 51.7 20 0.00044 28.2 3.6 53 412-465 1-53 (75)
155 PRK10434 srlR DNA-bindng trans 51.4 23 0.00049 35.3 4.7 49 406-463 4-53 (256)
156 cd02791 MopB_CT_Nitrate-R-NapA 49.7 1.1E+02 0.0024 26.1 8.3 67 259-335 5-81 (122)
157 COG2345 Predicted transcriptio 49.4 26 0.00056 34.1 4.5 44 410-462 14-58 (218)
158 TIGR02698 CopY_TcrY copper tra 48.9 41 0.00089 29.8 5.5 52 409-465 6-58 (130)
159 cd00508 MopB_CT_Fdh-Nap-like T 45.5 1.4E+02 0.003 25.2 8.3 55 272-336 24-82 (120)
160 PF06163 DUF977: Bacterial pro 44.6 1.1E+02 0.0023 27.2 7.2 56 406-470 11-67 (127)
161 cd05560 Xcc1710_like Xcc1710_l 43.6 57 0.0012 28.0 5.4 26 368-393 41-66 (109)
162 cd07153 Fur_like Ferric uptake 43.4 50 0.0011 28.1 5.1 48 411-462 5-54 (116)
163 smart00346 HTH_ICLR helix_turn 43.3 56 0.0012 26.3 5.2 48 406-462 4-53 (91)
164 PF09012 FeoC: FeoC like trans 42.5 51 0.0011 25.6 4.5 45 410-463 3-48 (69)
165 cd02792 MopB_CT_Formate-Dh-Na- 41.9 1.7E+02 0.0038 24.8 8.4 55 272-336 24-82 (122)
166 PF13601 HTH_34: Winged helix 41.6 94 0.002 25.0 6.1 60 419-487 13-75 (80)
167 KOG3904 Predicted hydrolase RP 37.9 4.8 0.00011 38.2 -2.3 66 80-147 74-144 (209)
168 PF09339 HTH_IclR: IclR helix- 36.0 75 0.0016 23.0 4.3 47 407-462 3-51 (52)
169 PF08279 HTH_11: HTH domain; 35.5 66 0.0014 23.4 4.0 41 408-457 1-43 (55)
170 KOG2839 Diadenosine and diphos 35.3 99 0.0021 28.1 5.6 98 16-149 23-127 (145)
171 KOG4432 Uncharacterized NUDIX 34.7 56 0.0012 33.1 4.3 136 6-150 232-379 (405)
172 cd02786 MopB_CT_3 The MopB_CT_ 33.4 2.6E+02 0.0055 23.5 8.0 53 273-335 21-77 (116)
173 PRK05638 threonine synthase; V 32.4 66 0.0014 34.7 5.0 87 364-462 324-419 (442)
174 PRK10141 DNA-binding transcrip 31.8 1.1E+02 0.0023 26.8 5.3 46 411-465 20-66 (117)
175 PF12802 MarR_2: MarR family; 31.1 1.4E+02 0.003 21.9 5.3 47 411-466 9-58 (62)
176 COG4742 Predicted transcriptio 30.9 71 0.0015 32.0 4.4 45 409-462 15-59 (260)
177 KOG3069 Peroxisomal NUDIX hydr 30.8 97 0.0021 30.4 5.2 105 9-146 50-162 (246)
178 COG1349 GlpR Transcriptional r 29.3 77 0.0017 31.4 4.5 48 406-462 4-52 (253)
179 cd00248 Mth938-like Mth938-lik 28.4 1.5E+02 0.0033 25.3 5.7 26 369-394 41-67 (109)
180 PRK13518 carboxylate-amine lig 28.3 50 0.0011 34.7 3.1 63 54-118 51-119 (357)
181 PF14493 HTH_40: Helix-turn-he 28.3 1.1E+02 0.0023 25.2 4.5 38 411-458 5-42 (91)
182 smart00420 HTH_DEOR helix_turn 27.9 1.3E+02 0.0029 20.9 4.5 42 412-462 5-47 (53)
183 cd02782 MopB_CT_1 The MopB_CT_ 27.6 2.7E+02 0.0058 24.0 7.3 56 270-335 20-79 (129)
184 PRK10906 DNA-binding transcrip 27.3 1E+02 0.0022 30.6 5.0 48 406-462 4-52 (252)
185 PF12791 RsgI_N: Anti-sigma fa 27.2 43 0.00093 24.8 1.8 24 7-33 8-31 (56)
186 PRK10046 dpiA two-component re 26.8 1E+02 0.0022 29.4 4.8 43 411-462 166-210 (225)
187 PRK09802 DNA-binding transcrip 26.4 1.2E+02 0.0027 30.3 5.4 49 406-463 16-65 (269)
188 PF10557 Cullin_Nedd8: Cullin 25.3 2.3E+02 0.0049 21.9 5.6 55 409-464 10-65 (68)
189 PRK13509 transcriptional repre 24.9 1.4E+02 0.0029 29.6 5.4 48 406-462 4-52 (251)
190 smart00418 HTH_ARSR helix_turn 24.8 1.2E+02 0.0025 21.9 3.9 42 413-463 3-44 (66)
191 cd02790 MopB_CT_Formate-Dh_H F 24.5 3.1E+02 0.0066 22.9 6.9 68 259-336 5-82 (116)
192 PHA00738 putative HTH transcri 24.5 1.3E+02 0.0029 25.9 4.4 43 411-462 16-59 (108)
193 cd02778 MopB_CT_Thiosulfate-R- 24.3 4.4E+02 0.0095 22.3 8.8 55 272-336 19-77 (123)
194 PRK02079 pyrroloquinoline quin 24.1 1.7E+02 0.0037 24.1 4.9 49 409-460 38-86 (88)
195 KOG3041 Nucleoside diphosphate 23.0 2.5E+02 0.0054 27.0 6.2 118 7-159 80-206 (225)
196 PRK15431 ferrous iron transpor 21.8 2.1E+02 0.0046 23.2 4.8 44 411-463 6-50 (78)
197 PF01475 FUR: Ferric uptake re 21.7 2.6E+02 0.0056 23.9 5.9 49 411-463 12-62 (120)
198 PLN02594 phosphatidate cytidyl 21.6 3.9E+02 0.0084 27.9 8.0 61 373-438 260-322 (342)
199 KOG4432 Uncharacterized NUDIX 21.6 67 0.0014 32.6 2.3 79 18-106 40-123 (405)
200 PF01047 MarR: MarR family; I 21.4 1.8E+02 0.004 21.1 4.3 48 412-468 8-56 (59)
201 TIGR00122 birA_repr_reg BirA b 21.3 2E+02 0.0044 21.9 4.7 43 411-462 4-46 (69)
202 TIGR01884 cas_HTH CRISPR locus 21.2 1.8E+02 0.004 27.6 5.3 47 408-463 144-191 (203)
203 PF14947 HTH_45: Winged helix- 20.8 2.4E+02 0.0052 22.3 5.1 60 408-477 7-66 (77)
204 PRK06266 transcription initiat 20.7 2.8E+02 0.0061 26.0 6.2 44 410-462 25-69 (178)
205 cd02785 MopB_CT_4 The MopB_CT_ 20.6 5.4E+02 0.012 21.9 8.6 55 271-335 20-78 (124)
206 TIGR02702 SufR_cyano iron-sulf 20.5 1.9E+02 0.0041 27.5 5.2 43 411-462 5-48 (203)
207 COG1107 Archaea-specific RecJ- 20.4 1.1E+02 0.0023 34.2 3.7 38 232-271 421-458 (715)
No 1
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.95 E-value=9.3e-27 Score=237.29 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=140.8
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCC-CccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecC
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~ 308 (522)
+.+++||||.... +.+.+++.+ .+++|++||+|.||+||+..|++.+ +++||+++.+...+.. ....+.
T Consensus 98 ~~~~vVDP~~a~~----vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~V~g~~~~~~~i~~-----~d~~v~ 167 (329)
T PLN02398 98 GTVGVVDPSEAVP----VIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY-GAKVIGSAVDKDRIPG-----IDIVLK 167 (329)
T ss_pred CEEEEEcCCCHHH----HHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-CCEEEEehHHhhhccC-----CcEEeC
Confidence 3589999985433 344444433 4679999999999999999999987 7999999887655432 246788
Q ss_pred CCceEEECCEEEEEEeCCCCCCCCeEEEeCCCCEEEEcccccCCCCcccccCCCCCHHHHHHHHHHHhcCCCcE-EEcCC
Q 009940 309 GSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIPMH 387 (522)
Q Consensus 309 ~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~l~~l~~~~-ivPgH 387 (522)
+|+++.+||.+++++++||||+||++|++++.++||+||++|..+.+.. +.++..++++||++|.+++.++ |+|||
T Consensus 168 dGd~i~lgg~~l~vi~tPGHT~GhI~~~~~~~~vLFtGDtLf~~g~Gr~---feg~~~~~~~SL~rL~~L~~~t~VypGH 244 (329)
T PLN02398 168 DGDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKL---FEGTPEQMLSSLQKIISLPDDTNIYCGH 244 (329)
T ss_pred CCCEEEECCeEEEEEeCCCcCCCCEEEEECCCCEEEECCCcCCCCcCCC---CCCCHHHHHHHHHHHHcCCCCeEEECCC
Confidence 9999999999999999999999999999998899999999998766543 6789999999999999998886 78999
Q ss_pred CCCcCChHHH--HHHHHHHHHHHHHHHHHHHHcCC
Q 009940 388 GRVNLWPKHM--LCGYLKNRRAREAAILQAIENGV 420 (522)
Q Consensus 388 G~~~~~~~~~--i~~~l~~~~~r~~~il~~l~~g~ 420 (522)
|....+..-. ++-......++.+++.+.-+++.
T Consensus 245 gyt~~Nl~Fa~~vep~n~~l~~~~~~v~~~r~~~~ 279 (329)
T PLN02398 245 EYTLSNSKFALSIEPNNEVLQSYAAHVAHLRSKGL 279 (329)
T ss_pred CChhcchhhHhhhCCChHHHHHHHHHHHHHHHcCC
Confidence 9987665433 33334455566666666666553
No 2
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.94 E-value=4.5e-26 Score=225.88 Aligned_cols=176 Identities=23% Similarity=0.327 Sum_probs=135.5
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCC-CccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecC
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~ 308 (522)
++.+|||||... .+.+.+++.+ .+++|++||.|.||+||+..+++.++ ++||+++.+ . .+.....+.
T Consensus 20 ~~~ilID~g~~~----~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~-~~V~~~~~~--~-----~~~~~~~v~ 87 (248)
T TIGR03413 20 GQAAVVDPGEAE----PVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP-APVYGPAEE--R-----IPGITHPVK 87 (248)
T ss_pred CCEEEEcCCChH----HHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC-CeEEecccc--c-----CCCCcEEeC
Confidence 359999999654 3344444444 46799999999999999999998885 999998765 1 122346788
Q ss_pred CCceEEECCEEEEEEeCCCCCCCCeEEEeCCCCEEEEcccccCCCCcccccCCCCCHHHHHHHHHHHhcCCCcE-EEcCC
Q 009940 309 GSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIPMH 387 (522)
Q Consensus 309 ~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~l~~l~~~~-ivPgH 387 (522)
+|+.+.+|+..++++++||||+||+++++++.+++|+||+++..+++.. +.++..+|++||+++.+++.++ |+|||
T Consensus 88 ~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~~~~~lftGDtl~~~g~g~~---~~~~~~~~~~Sl~~l~~l~~~~~i~pGH 164 (248)
T TIGR03413 88 DGDTVTLGGLEFEVLAVPGHTLGHIAYYLPDSPALFCGDTLFSAGCGRL---FEGTPEQMYDSLQRLAALPDDTLVYCAH 164 (248)
T ss_pred CCCEEEECCEEEEEEECCCCCcccEEEEECCCCEEEEcCccccCCcCCC---CCCCHHHHHHHHHHHHcCCCCeEEECCC
Confidence 9999999999999999999999999999998899999999988766543 5679999999999999999986 79999
Q ss_pred CCCcCChHHH--HHHHHHHHHHHHHHHHHHHHcCC
Q 009940 388 GRVNLWPKHM--LCGYLKNRRAREAAILQAIENGV 420 (522)
Q Consensus 388 G~~~~~~~~~--i~~~l~~~~~r~~~il~~l~~g~ 420 (522)
|....+.+-. ++-..+..+++.+++.+..++|.
T Consensus 165 ~~~~~n~~fa~~~~p~~~~l~~~~~~~~~~~~~~~ 199 (248)
T TIGR03413 165 EYTLSNLRFALTVEPDNPALQERLKEVEALRAQGQ 199 (248)
T ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHHCCC
Confidence 9887554322 21122334444455555555554
No 3
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.94 E-value=1.2e-25 Score=223.64 Aligned_cols=151 Identities=21% Similarity=0.282 Sum_probs=121.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCC-CccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecC
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~ 308 (522)
++++|||||.. +.+.+.+++.+ .+.+|++||+|.||+||+..|++.+|+++||+++.+. + ......+.
T Consensus 23 ~~~vlIDp~~~----~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~--~-----~~~~~~v~ 91 (258)
T PLN02469 23 KDAAVVDPVDP----EKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDN--V-----KGCTHPVE 91 (258)
T ss_pred CeEEEECCCCh----HHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhc--C-----CCCCeEeC
Confidence 46899999943 34555555544 4679999999999999999999999999999987541 1 11245688
Q ss_pred CCceEEECC-EEEEEEeCCCCCCCCeEEEeCC----CCEEEEcccccCCCCcccccCCCCCHHHHHHHHHH-HhcCCCc-
Q 009940 309 GSEDICVGG-QRLTVVFSPGHTDGHVALLHAS----TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYK-FLELSPH- 381 (522)
Q Consensus 309 ~g~~l~lgg-~~l~vi~tPGHT~g~i~l~~~~----~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~-l~~l~~~- 381 (522)
+|+++.+|+ ..+++++|||||+||++|++++ .++||+||++|..+++.+ +.++..++++||++ +..++.+
T Consensus 92 ~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~---~~g~~~~~~~Sl~~~l~~Lp~~t 168 (258)
T PLN02469 92 NGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKF---FEGTAEQMYQSLCVTLGSLPKPT 168 (258)
T ss_pred CCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCC---CCCCHHHHHHHHHHHHHcCCCCe
Confidence 999999996 6899999999999999999873 369999999998776653 57899999999985 5568766
Q ss_pred EEEcCCCCCcCCh
Q 009940 382 ALIPMHGRVNLWP 394 (522)
Q Consensus 382 ~ivPgHG~~~~~~ 394 (522)
.|+||||....+.
T Consensus 169 ~vypGH~yt~~nl 181 (258)
T PLN02469 169 QVYCGHEYTVKNL 181 (258)
T ss_pred EEEcCCCCchhHH
Confidence 5999999987544
No 4
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.93 E-value=2e-25 Score=221.63 Aligned_cols=175 Identities=25% Similarity=0.325 Sum_probs=135.4
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCC-CccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecC
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~ 308 (522)
+..+|||||... .+.+.+++.+ ++.+|++||.|.||+||+..+++.+|+++||+++.+.. ......+.
T Consensus 22 ~~~ilIDpg~~~----~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~-------~~~~~~v~ 90 (251)
T PRK10241 22 GRCLIVDPGEAE----PVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD-------KGTTQVVK 90 (251)
T ss_pred CcEEEECCCChH----HHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc-------cCCceEeC
Confidence 468999999654 3444444444 35699999999999999999999998999999865421 11245678
Q ss_pred CCceEEECCEEEEEEeCCCCCCCCeEEEeCCCCEEEEcccccCCCCcccccCCCCCHHHHHHHHHHHhcCCCcE-EEcCC
Q 009940 309 GSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIPMH 387 (522)
Q Consensus 309 ~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~l~~l~~~~-ivPgH 387 (522)
+|+.+.+|+..++++++||||+||++|+. .+++|+||+++..+++.. +.++..++++||+++.++++++ |+|||
T Consensus 91 ~g~~i~ig~~~~~vi~tPGHT~ghi~~~~--~~~lFtGDtlf~~g~gr~---f~g~~~~~~~Sl~kl~~l~~~t~i~pgH 165 (251)
T PRK10241 91 DGETAFVLGHEFSVFATPGHTLGHICYFS--KPYLFCGDTLFSGGCGRL---FEGTASQMYQSLKKINALPDDTLICCAH 165 (251)
T ss_pred CCCEEEeCCcEEEEEEcCCCCccceeeec--CCcEEEcCeeccCCcCCC---CCCCHHHHHHHHHHHHcCCCCEEEECCC
Confidence 99999999999999999999999999986 479999999988766643 5789999999999999999987 78999
Q ss_pred CCCcCChHHHHH--HHHHHHHHHHHHHHHHHHcCC
Q 009940 388 GRVNLWPKHMLC--GYLKNRRAREAAILQAIENGV 420 (522)
Q Consensus 388 G~~~~~~~~~i~--~~l~~~~~r~~~il~~l~~g~ 420 (522)
|....+.+-.+. -...+.+++.+++.+..++|.
T Consensus 166 ~y~~~n~~fa~~~~p~n~~l~~~~~~~~~~~~~~~ 200 (251)
T PRK10241 166 EYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQ 200 (251)
T ss_pred CChhhhHHHHHHhCCCCHHHHHHHHHHHHHHHCCC
Confidence 998766554332 223344555566666555554
No 5
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.92 E-value=4.9e-24 Score=225.07 Aligned_cols=212 Identities=15% Similarity=0.184 Sum_probs=151.0
Q ss_pred eecCCeEEEEeccCCCCCCCccccEEEEccCCCCCCCcceEEEec-CCeEEEcCCCCChHHHHHHHHHH---hCCCccEE
Q 009940 185 QEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVA---SLPRKLIV 260 (522)
Q Consensus 185 ~evapGv~~v~~~~~~~~p~~~~N~~~i~~~~~~~g~~~~~~l~~-g~~iLIDtG~~~~~~~~L~~~~~---~~~~i~~I 260 (522)
.++.+||||+.......+-|...+ |-+ ..|...|+|++. ++.+|||||..... +.+.+.++ ...++++|
T Consensus 1 ~~i~~~v~~vg~~d~~~~~f~~~~-~~~-----~~g~~~NsyLI~~~~~vLIDtg~~~~~-~~~~~~l~~~~~~~~Id~I 73 (394)
T PRK11921 1 FKINDNVTWVGKIDWELRKFHGEE-YST-----HRGSSYNSYLIKDEKTVLIDTVWQPFA-KEFVENLKKEIDLDKIDYI 73 (394)
T ss_pred CeecCCeEEEeeecCCcceecceE-eec-----CCceEEEEEEEeCCCEEEEeCCCCCcH-HHHHHHHHhhcCcccCCEE
Confidence 368999999988766555553211 222 135566666664 45899999976432 23333332 23457899
Q ss_pred EEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCC-CCCCceecCCCceEEECCEEEEEEeCCC-CCCCCeEEEeC
Q 009940 261 FVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-WSLGYTSVSGSEDICVGGQRLTVVFSPG-HTDGHVALLHA 338 (522)
Q Consensus 261 iiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~-~~~~~~~l~~g~~l~lgg~~l~vi~tPG-HT~g~i~l~~~ 338 (522)
++||.|+||+||+..+.+.+|+++||+++.+...+.... .......+.+|+++++|+.+++++++|| |||||+++|++
T Consensus 74 ilTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~ 153 (394)
T PRK11921 74 VANHGEIDHSGALPELMKEIPDTPIYCTKNGAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLT 153 (394)
T ss_pred EeCCCCCchhhHHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEc
Confidence 999999999999999999999999999998776654221 1123567889999999999999999998 99999999999
Q ss_pred CCCEEEEcccccCCCCcc--cccCCC-C----------------CHHHHHHHHHHHh--cCCCcEEEcCCCCCcC-ChHH
Q 009940 339 STNSLIVGDHCVGQGSAV--LDITAG-G----------------NMTDYFQSTYKFL--ELSPHALIPMHGRVNL-WPKH 396 (522)
Q Consensus 339 ~~~vLftGD~l~~~~~~~--~~~~~~-~----------------~~~~~~~SL~~l~--~l~~~~ivPgHG~~~~-~~~~ 396 (522)
++++||+||++-...... ++.... . -...+.+.+++|. ++++++|+|+||++.+ +..+
T Consensus 154 ~~~vLFsgD~fG~~~~~~~~~~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~l~~~~l~~~~i~p~HG~i~~~~~~~ 233 (394)
T PRK11921 154 GDNILFSNDAFGQHYASELMYNDLVDQGELYQEAIKYYANILTPFSPLVIKKIEEILSLNLPVDMICPSHGVIWRDNPLQ 233 (394)
T ss_pred CCCEEEecCcccccccCcccccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEcCCccEEeCCHHH
Confidence 999999999865433321 111000 0 0113356778888 5589999999999875 4566
Q ss_pred HHHHHHH
Q 009940 397 MLCGYLK 403 (522)
Q Consensus 397 ~i~~~l~ 403 (522)
.++.|.+
T Consensus 234 ~~~~Y~~ 240 (394)
T PRK11921 234 IVEKYLE 240 (394)
T ss_pred HHHHHHH
Confidence 7777775
No 6
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.92 E-value=4.4e-24 Score=211.06 Aligned_cols=149 Identities=25% Similarity=0.387 Sum_probs=120.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCC-CccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecC
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~ 308 (522)
++++|||||.... ..+.+.+++.+ .+.+|++||.|.||++|+..+++++|++++++++... ......+.
T Consensus 36 ~~avlIDP~~~~~--~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~~--------~~~d~~l~ 105 (251)
T PLN02962 36 KPALLIDPVDKTV--DRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKASG--------SKADLFVE 105 (251)
T ss_pred CEEEEECCCCCcH--HHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEeccccC--------CCCCEEeC
Confidence 4589999985322 24445555554 4669999999999999999999988999999975321 11235588
Q ss_pred CCceEEECCEEEEEEeCCCCCCCCeEEEeCC------CCEEEEcccccCCCCcccccCCCCCHHHHHHHHH-HHhcCCCc
Q 009940 309 GSEDICVGGQRLTVVFSPGHTDGHVALLHAS------TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTY-KFLELSPH 381 (522)
Q Consensus 309 ~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~------~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~-~l~~l~~~ 381 (522)
+|+++.+|+..+++++|||||+||++|++++ .+++|+||++|..+.+..+. +.++..++++||+ ++..++.+
T Consensus 106 ~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~-~~g~~~~l~~Sl~~~l~~L~~~ 184 (251)
T PLN02962 106 PGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDF-QGGSSDQLYKSVHSQIFTLPKD 184 (251)
T ss_pred CCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCC-CCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999853 36999999999887776654 5789999999996 68889887
Q ss_pred E-EEcCCCC
Q 009940 382 A-LIPMHGR 389 (522)
Q Consensus 382 ~-ivPgHG~ 389 (522)
+ |+||||.
T Consensus 185 ~~i~PGHg~ 193 (251)
T PLN02962 185 TLIYPAHDY 193 (251)
T ss_pred eEEECCCCC
Confidence 5 8999995
No 7
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.92 E-value=7.9e-24 Score=227.79 Aligned_cols=216 Identities=14% Similarity=0.165 Sum_probs=153.1
Q ss_pred eecCCeEEEEeccCCCCCCCccccE-EEEccCCCCCCCcceEEEe-cCCeEEEcCCCCChHHHHHHHHHHh--CCCccEE
Q 009940 185 QEYPPGVILVPMQSRTAKPFLTTNL-IVFAPDSVSDDCGNHRFVA-QGEALIVDPGCRSEFHEELLKVVAS--LPRKLIV 260 (522)
Q Consensus 185 ~evapGv~~v~~~~~~~~p~~~~N~-~~i~~~~~~~g~~~~~~l~-~g~~iLIDtG~~~~~~~~L~~~~~~--~~~i~~I 260 (522)
.++.++|||++......+-|. ++ |-+. .|...|+|++ +++.+|||||......+.+.++... ..++++|
T Consensus 3 ~~i~~~vy~vg~~d~~~~~F~--~~~~~~~-----~G~t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~I 75 (479)
T PRK05452 3 IHVKNNIHWVGQRDWEVRDFH--GTEYKTL-----RGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYI 75 (479)
T ss_pred EEecCCeEEEeeecCCccccc--cceeecC-----CCcEEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEE
Confidence 578999999998766555553 22 3221 3445566666 4568999999654333333333222 2357899
Q ss_pred EEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCC--CCCceecCCCceEEEC-CEEEEEEeCCC-CCCCCeEEE
Q 009940 261 FVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDW--SLGYTSVSGSEDICVG-GQRLTVVFSPG-HTDGHVALL 336 (522)
Q Consensus 261 iiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~--~~~~~~l~~g~~l~lg-g~~l~vi~tPG-HT~g~i~l~ 336 (522)
++||.|+||+||+..+.+.+|+++||+++.+...+..... ...+..+++|+++++| +.+++++++|| ||||++++|
T Consensus 76 ilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y 155 (479)
T PRK05452 76 VINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTY 155 (479)
T ss_pred EeCCCCcchhchHHHHHHHCCCCEEEECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEE
Confidence 9999999999999999998899999999998877654321 2235678999999999 47999999997 999999999
Q ss_pred eCCCCEEEEcccccCCCCcc--cccCCC----------------CCH-HHHHHHHHHHh--cCCCcEEEcCCCCCcC-Ch
Q 009940 337 HASTNSLIVGDHCVGQGSAV--LDITAG----------------GNM-TDYFQSTYKFL--ELSPHALIPMHGRVNL-WP 394 (522)
Q Consensus 337 ~~~~~vLftGD~l~~~~~~~--~~~~~~----------------~~~-~~~~~SL~~l~--~l~~~~ivPgHG~~~~-~~ 394 (522)
++++++|||||++-...... ++...+ ... ..+.++|+++. ++++++|+||||++.+ +.
T Consensus 156 ~~~~~vLFsgD~fG~~~~~~~~f~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~~~~l~l~~~~i~p~HG~i~r~~~ 235 (479)
T PRK05452 156 LTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNP 235 (479)
T ss_pred EcCCCEEEecccccCCCCchhhhcccCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCEEECCCCceEeCCH
Confidence 99999999999864433221 110000 011 12367788888 4589999999999865 45
Q ss_pred HHHHHHHHHHHHH
Q 009940 395 KHMLCGYLKNRRA 407 (522)
Q Consensus 395 ~~~i~~~l~~~~~ 407 (522)
.+.++.|++....
T Consensus 236 ~~~l~~Y~~~~~~ 248 (479)
T PRK05452 236 TQIVELYLKWAAD 248 (479)
T ss_pred HHHHHHHHHHhhc
Confidence 6677777764443
No 8
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=205.17 Aligned_cols=173 Identities=24% Similarity=0.372 Sum_probs=131.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCC-CCEEEEcH-hHHHHhccCCCCCCceecCC
Q 009940 232 ALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP-DAILLAHE-NTMRRIGKDDWSLGYTSVSG 309 (522)
Q Consensus 232 ~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p-~a~V~a~~-~~~~~l~~~~~~~~~~~l~~ 309 (522)
+.++|+.........+.+...+...+.+|++||+|.||+||+..|.+.+| ++++|.+. .....+ ...+.+
T Consensus 27 a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~r~~~i--------~~~~~~ 98 (265)
T KOG0813|consen 27 ADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADDRIPGI--------TRGLKD 98 (265)
T ss_pred eeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCChhcCccc--------cccCCC
Confidence 66888887665444444443344566799999999999999999999865 89999985 221111 233789
Q ss_pred CceEEECCEEEEEEeCCCCCCCCeEEEeCC---CCEEEEcccccCCCCcccccCCCCCHHHHHHHHHHHhcCCCc-EEEc
Q 009940 310 SEDICVGGQRLTVVFSPGHTDGHVALLHAS---TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPH-ALIP 385 (522)
Q Consensus 310 g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~---~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~~l~~l~~~-~ivP 385 (522)
|+++.++|..+++++|||||.||+||++.+ .+.+|+||++|..+++.+ +.+..+++..|++.+..++.+ .|+|
T Consensus 99 ~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~~GcG~~---FEgt~~~M~~sl~~l~~L~~~t~iyp 175 (265)
T KOG0813|consen 99 GETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFGAGCGRF---FEGTAEQMDSSLNELIALPDDTRIYP 175 (265)
T ss_pred CcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCceeecCccch---hcCCHHHHHHhHHHhhcCCCCceEcc
Confidence 999999999999999999999999999985 789999999999888744 567778888888889999998 5899
Q ss_pred CCCCCcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009940 386 MHGRVNLWPKHMLCGYLKNRRAREAAILQAIE 417 (522)
Q Consensus 386 gHG~~~~~~~~~i~~~l~~~~~r~~~il~~l~ 417 (522)
||+... .......++++...++++.++.+.
T Consensus 176 GHeYt~--~n~kf~~~ve~~n~~~q~~l~~~~ 205 (265)
T KOG0813|consen 176 GHEYTK--SNLKFARYVEPRNEVEQEKLDWLV 205 (265)
T ss_pred Cccccc--ccceeeeecccccHHHHHHHHHHH
Confidence 999443 222334555555555555555554
No 9
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.86 E-value=3e-20 Score=181.72 Aligned_cols=158 Identities=25% Similarity=0.425 Sum_probs=119.4
Q ss_pred CeEEEcCCCCChHHHHHHHHHHhCC-CccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCC----------
Q 009940 231 EALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD---------- 299 (522)
Q Consensus 231 ~~iLIDtG~~~~~~~~L~~~~~~~~-~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~---------- 299 (522)
..+|||||........+.+.....+ ++++|++||.|.||+||+..+++..+.++++.++..........
T Consensus 36 ~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (252)
T COG0491 36 GAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEA 115 (252)
T ss_pred ceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhhccccccccccccc
Confidence 6899999988753345555555554 58899999999999999999998765578855544333221110
Q ss_pred --CC--CCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEeCCCCEEEEcccccCCC--CcccccCCCCCHHHHHHHHH
Q 009940 300 --WS--LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQG--SAVLDITAGGNMTDYFQSTY 373 (522)
Q Consensus 300 --~~--~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~--~~~~~~~~~~~~~~~~~SL~ 373 (522)
.+ .....+.+++.+.+++..+++++|||||+||++++++++++||+||+++... ...... ...+...++++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~~~~l~~gD~~~~~~~~~~~~~~-~~~~~~~~~~s~~ 194 (252)
T COG0491 116 YAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRLDL-PGGDAAQLLASLR 194 (252)
T ss_pred CCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECCccEEEecceeccCCCCCccccC-CCCCHHHHHHHHH
Confidence 11 1234566899999999999999999999999999999888999999998775 112221 2233899999999
Q ss_pred HHhcCCCc--EEEcCCCC
Q 009940 374 KFLELSPH--ALIPMHGR 389 (522)
Q Consensus 374 ~l~~l~~~--~ivPgHG~ 389 (522)
++..+..+ .++||||+
T Consensus 195 ~~~~~~~~~~~v~pgHg~ 212 (252)
T COG0491 195 RLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred HHHhccCCCCEEECCCCc
Confidence 99988776 89999998
No 10
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.84 E-value=2.3e-19 Score=183.92 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=152.8
Q ss_pred cceecCCeEEEEeccCCCCCCCccccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHh---CCCccE
Q 009940 183 SYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS---LPRKLI 259 (522)
Q Consensus 183 ~~~evapGv~~v~~~~~~~~p~~~~N~~~i~~~~~~~g~~~~~~l~~g~~iLIDtG~~~~~~~~L~~~~~~---~~~i~~ 259 (522)
...++++++|+++..+...+-| .+.+-+. .+.++|++.|.+++.+||||+...... .+.+.+.+ ..++++
T Consensus 3 ~~~~i~~~i~~~~~~dw~~~~f--~~~~~~~----~GttyNSYLI~~~k~aLID~~~~~~~~-~~l~~l~~~id~k~iDY 75 (388)
T COG0426 3 QVLKIADNIYWVGVRDWDRRRF--EIEYETP----RGTTYNSYLIVGDKTALIDTVGEKFFD-EYLENLSKYIDPKEIDY 75 (388)
T ss_pred ccccccCceEEecccchhheee--eeeeccC----CCceeeeEEEeCCcEEEECCCCcchHH-HHHHHHHhhcChhcCeE
Confidence 4567899999997644322222 1221111 123455555555669999999776443 33333333 345789
Q ss_pred EEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCC-CceecCCCceEEECCEEEEEEeCC-CCCCCCeEEEe
Q 009940 260 VFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSL-GYTSVSGSEDICVGGQRLTVVFSP-GHTDGHVALLH 337 (522)
Q Consensus 260 IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~-~~~~l~~g~~l~lgg~~l~vi~tP-GHT~g~i~l~~ 337 (522)
||++|..+||+|++..+.+.+|+++|++++...+.++...... ....++.|+++++||.+++++.+| -|+||+++.|.
T Consensus 76 Ii~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd 155 (388)
T COG0426 76 IIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYD 155 (388)
T ss_pred EEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEee
Confidence 9999999999999999999999999999999988886542221 167889999999999999999887 59999999999
Q ss_pred CCCCEEEEcccccCCCCcccccCCCCCHHHHH-------------------HHHHHHhcCCCcEEEcCCCCCcCC-hHHH
Q 009940 338 ASTNSLIVGDHCVGQGSAVLDITAGGNMTDYF-------------------QSTYKFLELSPHALIPMHGRVNLW-PKHM 397 (522)
Q Consensus 338 ~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~-------------------~SL~~l~~l~~~~ivPgHG~~~~~-~~~~ 397 (522)
+++++|||+|++-.+.+... .++.++..++ ..++++..++.++|+|+||+++.. +.+.
T Consensus 156 ~~~kILFS~D~fG~h~~~~~--~fded~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i 233 (388)
T COG0426 156 PEDKILFSCDAFGAHVCDDY--RFDEDIEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEI 233 (388)
T ss_pred cCCcEEEccccccccccchh--ccccCHHHHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHH
Confidence 99999999998755444421 1333333222 344556667899999999999874 6666
Q ss_pred HHHHHHHHH
Q 009940 398 LCGYLKNRR 406 (522)
Q Consensus 398 i~~~l~~~~ 406 (522)
++.|.+..+
T Consensus 234 ~~~Y~~W~~ 242 (388)
T COG0426 234 VEAYRDWAE 242 (388)
T ss_pred HHHHHHHHc
Confidence 666665433
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.81 E-value=1.4e-18 Score=162.04 Aligned_cols=155 Identities=27% Similarity=0.402 Sum_probs=122.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHh--CCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCC--------
Q 009940 230 GEALIVDPGCRSEFHEELLKVVAS--LPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-------- 299 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~--~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~-------- 299 (522)
++.+|||||..... .+.+.+.+ ..++++|++||.|.||++|+..+.+. ++++||+++...+.+....
T Consensus 15 ~~~iliD~g~~~~~--~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~ 91 (183)
T smart00849 15 GGAILIDTGPGEAE--DLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAPVYAPEGTAELLKDLLKLGGALGA 91 (183)
T ss_pred CceEEEeCCCChhH--HHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-CCCcEEEchhhhHHHhccchhccccCc
Confidence 56899999965432 22222333 33677999999999999999988876 6899999999888775321
Q ss_pred ---CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEeCCCCEEEEcccccCCCC-cccccCCCCCHHHHHHHHHHH
Q 009940 300 ---WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGS-AVLDITAGGNMTDYFQSTYKF 375 (522)
Q Consensus 300 ---~~~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~-~~~~~~~~~~~~~~~~SL~~l 375 (522)
.......+..++++.+++.+++++++|||+++++++++++.+++|+||+.+.... .............+.++++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~vl~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (183)
T smart00849 92 EAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDASASDSLESLLKL 171 (183)
T ss_pred CCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECCCCEEEECCeeeccCCCCcccCCCCccHHHHHHHHHHh
Confidence 1233566889999999999999999999999999999999899999999876652 223333456788899999999
Q ss_pred hcCCCcEEEcCC
Q 009940 376 LELSPHALIPMH 387 (522)
Q Consensus 376 ~~l~~~~ivPgH 387 (522)
.+...++++|||
T Consensus 172 ~~~~~~~i~~~H 183 (183)
T smart00849 172 LALDPELVVPGH 183 (183)
T ss_pred hcCCccEeecCC
Confidence 999999999999
No 12
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.79 E-value=8.5e-19 Score=163.43 Aligned_cols=158 Identities=22% Similarity=0.325 Sum_probs=116.1
Q ss_pred CCeEEEcCCCCChHHHHH--HHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCC--------
Q 009940 230 GEALIVDPGCRSEFHEEL--LKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-------- 299 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L--~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~-------- 299 (522)
++.+|||||......... ........++++||+||.|.||+||+..|++..+...++.............
T Consensus 15 ~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (194)
T PF00753_consen 15 DGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAIRPPDRDSASRRG 94 (194)
T ss_dssp TEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeeccccccccccccccccccccc
Confidence 569999999988754443 2334455677899999999999999999999986555555544332221100
Q ss_pred ---CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEeCCCCEEEEcccccCCCCccccc---------CCCCCHHH
Q 009940 300 ---WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDI---------TAGGNMTD 367 (522)
Q Consensus 300 ---~~~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~---------~~~~~~~~ 367 (522)
................++..+.+...+||++++++++.+++++||+||+++......... ....+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
T PF00753_consen 95 PAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLLFSNEHPNPDPDLPLRGADVRYGSNWEE 174 (194)
T ss_dssp HHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTEEEEETTSCTTTSSSSSTSHTTTTHTTSHTTHHHH
T ss_pred cccccccceeeecccccccccccccceeccccCCcceEEEeCCCcEEEeeeEeccCCccccccccccccccccCcHHHHH
Confidence 001122234555566677888888999999999999999999999999998765554332 23457889
Q ss_pred HHHHHHHHhcCCCcEEEcCC
Q 009940 368 YFQSTYKFLELSPHALIPMH 387 (522)
Q Consensus 368 ~~~SL~~l~~l~~~~ivPgH 387 (522)
+.++++++.++++++++|||
T Consensus 175 ~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 175 SIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp HHHHHHHHHTSTTSEEEESS
T ss_pred HHHHHHHHHCCCCCEEEeCc
Confidence 99999999999999999999
No 13
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.75 E-value=2.1e-17 Score=150.74 Aligned_cols=156 Identities=21% Similarity=0.194 Sum_probs=102.9
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCC
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~ 309 (522)
++.|+|||-+-.. ...+.+..++.+.+|++||. ||+..+..+++.+ +++||+|..+.+.+.- .....+.+
T Consensus 32 ~GnilIDP~~ls~---~~~~~l~a~ggv~~IvLTn~--dHvR~A~~ya~~~-~a~i~~p~~d~~~~p~----~~D~~l~d 101 (199)
T PF14597_consen 32 EGNILIDPPPLSA---HDWKHLDALGGVAWIVLTNR--DHVRAAEDYAEQT-GAKIYGPAADAAQFPL----ACDRWLAD 101 (199)
T ss_dssp T--EEES-----H---HHHHHHHHTT--SEEE-SSG--GG-TTHHHHHHHS---EEEEEGGGCCC-SS------SEEE-T
T ss_pred CCCEEecCccccH---HHHHHHHhcCCceEEEEeCC--hhHhHHHHHHHHh-CCeeeccHHHHhhCCC----CCcccccc
Confidence 5689999987664 56677788999999999998 9999999999998 9999999988754421 23467889
Q ss_pred CceEEECCEEEEEEeCCC-CCCCCeEEEeCCCCEEEEcccccCCCCcccccCC---CCCHHHHHHHHHHHhcC-CCcEEE
Q 009940 310 SEDICVGGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLDITA---GGNMTDYFQSTYKFLEL-SPHALI 384 (522)
Q Consensus 310 g~~l~lgg~~l~vi~tPG-HT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~---~~~~~~~~~SL~~l~~l-~~~~iv 384 (522)
|+++ ++| +++++.|| ||||.+.+++++ ++||+||++.......+...+ ..|..+..+|++||.++ +++.++
T Consensus 102 ge~i-~~g--~~vi~l~G~ktpGE~ALlled-~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~~sl~RLa~~~~fe~lL 177 (199)
T PF14597_consen 102 GEEI-VPG--LWVIHLPGSKTPGELALLLED-RVLITGDLLRSHPAGSLSLLPDEKLYDPTEARASLRRLAAYPDFEWLL 177 (199)
T ss_dssp T-BS-STT--EEEEEE-SSSSTTEEEEEETT-TEEEESSSEEBSSTTS-EE--GGG-S-HHHHHHHHHHHHT-TT--EEE
T ss_pred CCCc-cCc--eEEEEcCCCCCCceeEEEecc-ceEEecceeeecCCCCeEECChHHcCCHHHHHHHHHHHhccccccEEe
Confidence 9866 455 99999999 999999999985 799999998765544333323 45899999999999999 699999
Q ss_pred cCCCCCcC-ChHHHHH
Q 009940 385 PMHGRVNL-WPKHMLC 399 (522)
Q Consensus 385 PgHG~~~~-~~~~~i~ 399 (522)
+|||.++- +.++++.
T Consensus 178 vGdGwpi~~~~r~rl~ 193 (199)
T PF14597_consen 178 VGDGWPIFRDARQRLR 193 (199)
T ss_dssp ESBB--B-S-HHHHHH
T ss_pred ecCCchhhhhHHHHHH
Confidence 99999874 4434333
No 14
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.74 E-value=7.5e-18 Score=151.99 Aligned_cols=158 Identities=22% Similarity=0.354 Sum_probs=125.2
Q ss_pred cceEEEe----cCCeEEEcCCCCChHHHHHHHHHHhCCC-ccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhc
Q 009940 222 GNHRFVA----QGEALIVDPGCRSEFHEELLKVVASLPR-KLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIG 296 (522)
Q Consensus 222 ~~~~~l~----~g~~iLIDtG~~~~~~~~L~~~~~~~~~-i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~ 296 (522)
++..|++ ++.++||||-.... ..-.+++++++- ..+-++||.|+||+.|.+.++...|+++-+.+...-.
T Consensus 20 sTytYll~d~~~~~AviIDPV~et~--~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~kSVis~~SGa--- 94 (237)
T KOG0814|consen 20 STYTYLLGDHKTGKAVIIDPVLETV--SRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCKSVISSASGA--- 94 (237)
T ss_pred ceEEEEeeeCCCCceEEecchhhcc--cchHHHHHhcCceeeeeecceeecccccccchHHHhcccHHHHhhhcccc---
Confidence 3444554 35699999986543 233456677763 4599999999999999999999999987665543211
Q ss_pred cCCCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEeCCCCEEEEcccccCCCCcccccCCCCCHHHHHHHHH-HH
Q 009940 297 KDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTY-KF 375 (522)
Q Consensus 297 ~~~~~~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~~~vLftGD~l~~~~~~~~~~~~~~~~~~~~~SL~-~l 375 (522)
.....+++|+.|++|+..+++..|||||+|++.|+..+.+..|+||+++-.+++..++ ..+.....++|+. ++
T Consensus 95 -----kAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d~~~aFTGDalLIRgCGRTDF-QqG~~~~LyesVH~kI 168 (237)
T KOG0814|consen 95 -----KADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHDLRMAFTGDALLIRGCGRTDF-QQGCPASLYESVHSKI 168 (237)
T ss_pred -----ccccccCCCCEEEEccEEEEEecCCCCCCceEEEEecCcceeeecceeEEeccCccch-hccChHHHHHHHhHHh
Confidence 2345688999999999999999999999999999999899999999999999888775 4566777777775 89
Q ss_pred hcCCCcE-EEcCCCCC
Q 009940 376 LELSPHA-LIPMHGRV 390 (522)
Q Consensus 376 ~~l~~~~-ivPgHG~~ 390 (522)
..++-++ |+|+|..-
T Consensus 169 FTLP~d~~iYpaHdY~ 184 (237)
T KOG0814|consen 169 FTLPEDYLIYPAHDYK 184 (237)
T ss_pred eeCCCceEEeeccccC
Confidence 9998886 89999764
No 15
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=8.1e-15 Score=150.49 Aligned_cols=314 Identities=15% Similarity=0.181 Sum_probs=197.7
Q ss_pred HHHH-HHhcCCCCCccchhhhhhhccccccccccCCCCCccceecCCeEEEEeccCCCCCCCccccEEEEccCCCCCCCc
Q 009940 144 CINC-LAEVKPSTDRVGPLVVIGLLNDLVQWRKWKVPPTLSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCG 222 (522)
Q Consensus 144 al~~-l~~~~~~~~r~g~~~~~gl~~~~~~~~~~~~~~~~~~~evapGv~~v~~~~~~~~p~~~~N~~~i~~~~~~~g~~ 222 (522)
+++. |-..++.+.. ++|+.-+.... ..+ ..++.||||++ ++|...|+.++.++
T Consensus 81 ~Y~Fll~~~~~~tVn------PSLwRQaqLn~---~~G---LfkVtd~iYQV-------RG~DisNITfveGd------- 134 (655)
T COG2015 81 AYDFLLDGAAPDTVN------PSLWRQAQLNA---KHG---LFKVTDGIYQV-------RGFDISNITFVEGD------- 134 (655)
T ss_pred ccccccCCCCccccC------HHHHHHHHHhh---hcC---eeeeccceeEe-------ecccccceEEEcCC-------
Confidence 3444 3344566666 67666333222 222 37899999999 57888899998875
Q ss_pred ceEEEecCCeEEEcCCCCChHHHHHHHHH-HhCCC--ccEEEEcCCCccccCCHHHHHH----hCCCCEEEEcHhHHHHh
Q 009940 223 NHRFVAQGEALIVDPGCRSEFHEELLKVV-ASLPR--KLIVFVTHHHRDHVDGLSIIQK----CNPDAILLAHENTMRRI 295 (522)
Q Consensus 223 ~~~~l~~g~~iLIDtG~~~~~~~~L~~~~-~~~~~--i~~IiiTH~H~DHiGG~~~l~~----~~p~a~V~a~~~~~~~l 295 (522)
.++|+|||-...+..+...++. +..++ +.+||.||+|.||+||..-+.+ ....++|++++..++..
T Consensus 135 -------tg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFme~a 207 (655)
T COG2015 135 -------TGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFMEEA 207 (655)
T ss_pred -------cceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchhHHHHH
Confidence 5699999998887655555544 34454 4599999999999999977643 23467899997665432
Q ss_pred ccCC------------------CC-----------------------CCc-eecCCCceEEECCEEEEEEeCCC-CCCCC
Q 009940 296 GKDD------------------WS-----------------------LGY-TSVSGSEDICVGGQRLTVVFSPG-HTDGH 332 (522)
Q Consensus 296 ~~~~------------------~~-----------------------~~~-~~l~~g~~l~lgg~~l~vi~tPG-HT~g~ 332 (522)
-..+ .+ .+. ..-+.|+++.++|.++++..||| .+|..
T Consensus 208 vaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaPT~~I~~~gE~~~iDGV~~~Fq~tPgtEaPAE 287 (655)
T COG2015 208 VAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAPTKIIEETGETLTIDGVEFEFQMTPGTEAPAE 287 (655)
T ss_pred HHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccCceeeecceEEeeccCceEEEeceEEEEeeCCCCCCcHH
Confidence 1100 00 011 22457899999999999999998 67889
Q ss_pred eEEEeCCCCEEEEcccccCCCCcccccCCC---CC---HHHHHHHHHHHhcCCCcEEEcCCCCCcCChHHHHHHHHHHHH
Q 009940 333 VALLHASTNSLIVGDHCVGQGSAVLDITAG---GN---MTDYFQSTYKFLELSPHALIPMHGRVNLWPKHMLCGYLKNRR 406 (522)
Q Consensus 333 i~l~~~~~~vLftGD~l~~~~~~~~~~~~~---~~---~~~~~~SL~~l~~l~~~~ivPgHG~~~~~~~~~i~~~l~~~~ 406 (522)
+-+|+|.-++|....-....-. ++..+.+ .| +..|++.-..+..-+.|+++..|++|. +....|.+++.+.+
T Consensus 288 M~~y~P~~kaL~mAEnat~~lH-NlytlRGa~vRD~~~Ws~ylneal~~fg~~adVmfa~H~WP~-wG~~~I~e~L~kqR 365 (655)
T COG2015 288 MHFYFPRLKALCMAENATHTLH-NLYTLRGAEVRDAKAWSKYLNEALDMFGDDADVMFASHTWPR-WGNAHINEFLGKQR 365 (655)
T ss_pred HhhhhhHHHHHHHHhhccccce-eeeecccceecchHHHHHHHHHHHHHhcccccEEEeecCCCc-cchHHHHHHHHHHH
Confidence 9999998888776654432211 1111111 13 445555444555668899999999984 55667777777666
Q ss_pred HH----HHHHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceeccchhhhccchhhHHHHHH
Q 009940 407 AR----EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSILKFRKTCGLHFLLRWAW 482 (522)
Q Consensus 407 ~r----~~~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 482 (522)
+. .++.+..+.+|. |..||.+.+ .+|+.+- ..-..+|.- +. +.+=+|-+.
T Consensus 366 Dmy~yiHDQTLrL~NqG~-T~~eI~~~~--~lPpaL~-----------~~W~~rGYy----GS--------vshNarAVy 419 (655)
T COG2015 366 DMYKYIHDQTLRLANQGY-TGNEIADMI--QLPPALA-----------REWYTRGYY----GS--------VSHNARAVY 419 (655)
T ss_pred HHHHHHHHHHHHHHhcCc-cHHHHHHHh--cCChHHH-----------HhHhhcCcc----cc--------ccccHHHHH
Confidence 65 456777788876 999998875 2332110 001122221 11 122233232
Q ss_pred -HhhhhhhhhhhccchhHHHhHHh----hhchhHHHHHHhh
Q 009940 483 -TYLRFQVRYQKLSMSKLLIGGAA----VAGFAVFFSIRNK 518 (522)
Q Consensus 483 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 518 (522)
-|.+||++|++-.-|..-+.++- ..||+-.+...+|
T Consensus 420 ~rYlG~yD~NPa~L~P~~p~d~a~ryV~amGGadrVl~la~ 460 (655)
T COG2015 420 NRYLGYYDGNPANLHPLPPVDSAKRYVEAMGGADRVLELAR 460 (655)
T ss_pred HHHhccccCCccccCCCChhHhHHHHHHHhccHHHHHHHHH
Confidence 68888888888766655444432 4466655555544
No 16
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.44 E-value=1.8e-12 Score=138.43 Aligned_cols=123 Identities=14% Similarity=0.148 Sum_probs=91.8
Q ss_pred cCCeEEEcCCCCChHHHH---------HHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhcc--
Q 009940 229 QGEALIVDPGCRSEFHEE---------LLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK-- 297 (522)
Q Consensus 229 ~g~~iLIDtG~~~~~~~~---------L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~-- 297 (522)
++..+|||||........ +..+.....++++|++||.|.||+||+..+.+.++.++||+++.+...+..
T Consensus 22 ~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~~~t~~~l~~~~ 101 (422)
T TIGR00649 22 DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGTPLTIALIKSKI 101 (422)
T ss_pred CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEeCHHHHHHHHHHH
Confidence 456899999975421100 111222344678999999999999999999887755799999988766542
Q ss_pred --CC--CCCCceecCCCceEEEC-CEEEEEEeCCCCCCCCeEEEe--CCCCEEEEcccccC
Q 009940 298 --DD--WSLGYTSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVG 351 (522)
Q Consensus 298 --~~--~~~~~~~l~~g~~l~lg-g~~l~vi~tPGHT~g~i~l~~--~~~~vLftGD~l~~ 351 (522)
.. .......+..++.+++| +.+++++++++|+||+++|.+ ++.+++|+||+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~ 162 (422)
T TIGR00649 102 KENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFD 162 (422)
T ss_pred HhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCC
Confidence 11 12345678899999996 599999999988999999987 45679999999764
No 17
>PRK11539 ComEC family competence protein; Provisional
Probab=99.24 E-value=2e-10 Score=130.92 Aligned_cols=149 Identities=16% Similarity=0.186 Sum_probs=100.2
Q ss_pred CCcceEEEe-cCCeEEEcCCCCC----hHHHHHHHHHHhCC-CccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHH
Q 009940 220 DCGNHRFVA-QGEALIVDPGCRS----EFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMR 293 (522)
Q Consensus 220 g~~~~~~l~-~g~~iLIDtG~~~----~~~~~L~~~~~~~~-~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~ 293 (522)
|++.+.++. +++.+|||||... ...+.+...++..+ ++++|++||.|.||+||+..+.+.+|..+++.+....
T Consensus 509 GqG~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~~- 587 (755)
T PRK11539 509 GHGLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNWA- 587 (755)
T ss_pred cCceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCcceeeccCccc-
Confidence 344555554 3569999999742 12234555555544 4779999999999999999999999989998864221
Q ss_pred HhccCCCCCCceecCCCceEEECCEEEEEEeCCCCC-----CCCeEEEeC--CCCEEEEcccccCCCCcccccCCCCCHH
Q 009940 294 RIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHT-----DGHVALLHA--STNSLIVGDHCVGQGSAVLDITAGGNMT 366 (522)
Q Consensus 294 ~l~~~~~~~~~~~l~~g~~l~lgg~~l~vi~tPGHT-----~g~i~l~~~--~~~vLftGD~l~~~~~~~~~~~~~~~~~ 366 (522)
...+...|+.+++++.++++++.++|+ ++++++.+. +.++||+||.= .+
T Consensus 588 ---------~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~---------------~~ 643 (755)
T PRK11539 588 ---------NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLE---------------AQ 643 (755)
T ss_pred ---------CcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCCC---------------hH
Confidence 123356899999999999999887765 456666664 34699999951 11
Q ss_pred HHHHHHHHH-hcCCCcE-EEcCCCCCcCC
Q 009940 367 DYFQSTYKF-LELSPHA-LIPMHGRVNLW 393 (522)
Q Consensus 367 ~~~~SL~~l-~~l~~~~-ivPgHG~~~~~ 393 (522)
...+-+++. ..++.|+ .+|.||.....
T Consensus 644 ~E~~Ll~~~~~~l~~dvL~vpHHGS~tSs 672 (755)
T PRK11539 644 AEQKLLSRYWQQLAATLLQVPHHGSNTSS 672 (755)
T ss_pred HHHHHHhcCccCcCCCEEEeCCCCCCCCC
Confidence 111222221 2346776 59999986543
No 18
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.23 E-value=7.4e-11 Score=115.15 Aligned_cols=156 Identities=15% Similarity=0.221 Sum_probs=97.5
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCC
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~ 309 (522)
+..+||||+........+. .... ++++|++||.|.||+++...+... +++++|+++.....+...+.. ....++.
T Consensus 17 ~~~iLiDP~~~~~~~~~~~--~~~~-~id~vliTH~H~DH~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-~~~~~~~ 91 (228)
T PRK00685 17 GKKILIDPFITGNPLADLK--PEDV-KVDYILLTHGHGDHLGDTVEIAKR-TGATVIANAELANYLSEKGVE-KTHPMNI 91 (228)
T ss_pred CEEEEECCCCCCCCCCCCC--hhcC-cccEEEeCCCCccccccHHHHHHh-CCCEEEEeHHHHHHHHhcCCC-ceeeccC
Confidence 4589999865321000110 1122 678999999999999998877654 589999999888777554322 4567888
Q ss_pred CceEEECCEEEEEEeCCCCCCC------------CeEEEe--CCCCEEEEcccccCCC--------Cccccc-CCCCC-H
Q 009940 310 SEDICVGGQRLTVVFSPGHTDG------------HVALLH--ASTNSLIVGDHCVGQG--------SAVLDI-TAGGN-M 365 (522)
Q Consensus 310 g~~l~lgg~~l~vi~tPGHT~g------------~i~l~~--~~~~vLftGD~l~~~~--------~~~~~~-~~~~~-~ 365 (522)
|+.+++++.+++++.+. |+.. ..+|.+ ++.+++|+||+-+... ...+.. +..+. -
T Consensus 92 ~~~~~~~~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~~~~~~D~~~~~~~~~~h 170 (228)
T PRK00685 92 GGTVEFDGGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDMKLIGELHKPDVALLPIGDNFT 170 (228)
T ss_pred CCcEEECCEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhHHHHHHHhhCCCEEEEecCCccc
Confidence 99999999888877542 3332 256655 4557999999854321 011100 01111 1
Q ss_pred HHHHHHHHHHhcCCCcEEEcCCCCCc
Q 009940 366 TDYFQSTYKFLELSPHALIPMHGRVN 391 (522)
Q Consensus 366 ~~~~~SL~~l~~l~~~~ivPgHG~~~ 391 (522)
-...++++-...++++.++|.|-..+
T Consensus 171 ~~~~ea~~~~~~~~~k~~v~~H~~~~ 196 (228)
T PRK00685 171 MGPEDAALAVELIKPKIVIPMHYNTF 196 (228)
T ss_pred cCHHHHHHHHHhhCCCEEEEeccCCC
Confidence 12233444456667999999998754
No 19
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.13 E-value=1.8e-09 Score=104.96 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=97.8
Q ss_pred cceEEEec--CCeEEEcCCCCCh-HHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHh-CCCCEEEEcHhHHHHhcc
Q 009940 222 GNHRFVAQ--GEALIVDPGCRSE-FHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMRRIGK 297 (522)
Q Consensus 222 ~~~~~l~~--g~~iLIDtG~~~~-~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~-~p~a~V~a~~~~~~~l~~ 297 (522)
..-++++. +..||+|||..+. ...+++.+..++.++++|++||.|+||+||+..+.+. .|+.+||+|+........
T Consensus 21 hGfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~~~~~ 100 (259)
T COG1237 21 HGFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFKAKIE 100 (259)
T ss_pred CceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHhhhcc
Confidence 33344443 3489999996654 4566677777778899999999999999999998774 489999999987662211
Q ss_pred CCCCCC---------ceecCCCceEEECCEEEEEEeCCCCCC-------------------CCeEEEeCCC-C-EEEEcc
Q 009940 298 DDWSLG---------YTSVSGSEDICVGGQRLTVVFSPGHTD-------------------GHVALLHAST-N-SLIVGD 347 (522)
Q Consensus 298 ~~~~~~---------~~~l~~g~~l~lgg~~l~vi~tPGHT~-------------------g~i~l~~~~~-~-vLftGD 347 (522)
...... .....+.+.|.-| ++. -|-.| +.+++.+..+ + ++++|.
T Consensus 101 ~~~~~gi~e~~~~~~~~~~~~~~~I~~g-----~~~-~Gei~~~~~e~~~~~~dg~~D~~~de~aLi~~~~~GlvvItGC 174 (259)
T COG1237 101 VFREIGIPELEELARLILSEEPDEIVEG-----VIT-LGEIPKVTFEKGGYFEDGEPDPVLDEQALIVETEKGLVVITGC 174 (259)
T ss_pred ccccccchhhhhccceeecCCCceeecC-----eEE-ecccCccccccccccccCCCCCcCCceEEEEecCCceEEEEcC
Confidence 110000 0111122222111 111 12222 5677776533 3 889997
Q ss_pred cccC---------CCCc-----cccc--CCCCCHHHHHHHHHHHhcCCCcEEEcCCCCC
Q 009940 348 HCVG---------QGSA-----VLDI--TAGGNMTDYFQSTYKFLELSPHALIPMHGRV 390 (522)
Q Consensus 348 ~l~~---------~~~~-----~~~~--~~~~~~~~~~~SL~~l~~l~~~~ivPgHG~~ 390 (522)
.-.+ ..+. .++. ....+-....++++.+.++.++.|+|+|-.-
T Consensus 175 sH~GI~niv~~~~~~~g~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~v~~i~pcHCTg 233 (259)
T COG1237 175 SHPGIVNIVEWAKERSGDRVKAVIGGFHLIGASEERLEEVADYLKELGVEKIYPCHCTG 233 (259)
T ss_pred CcccHHHHHHHHHHhccceeEEEeeeeccCCCcHHHHHHHHHHHHhcCCCeEEecCCCC
Confidence 6211 0000 0110 0122335566788899999999999999764
No 20
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.13 E-value=1.5e-09 Score=117.74 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=95.4
Q ss_pred EEEecCCeEEEcCCCCChHHH---------HHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHh
Q 009940 225 RFVAQGEALIVDPGCRSEFHE---------ELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRI 295 (522)
Q Consensus 225 ~~l~~g~~iLIDtG~~~~~~~---------~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l 295 (522)
.+-.+++.+++|+|....... ...-+.+...++++||+||+|.||+|+++++..+.+.++||+++-+...+
T Consensus 26 vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~s~lt~~Li 105 (555)
T COG0595 26 VVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPIYASPLTAALI 105 (555)
T ss_pred EEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCceecCHhhHHHH
Confidence 333457899999996543110 01111223346789999999999999999999887669999999887766
Q ss_pred ccC----C---CCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEe--CCCCEEEEcccccCC
Q 009940 296 GKD----D---WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVGQ 352 (522)
Q Consensus 296 ~~~----~---~~~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~--~~~~vLftGD~l~~~ 352 (522)
... + .......+..++.+++++..++++.+-.--|+++++.+ |.+.|++|||.-+..
T Consensus 106 ~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d~ 171 (555)
T COG0595 106 KEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFDP 171 (555)
T ss_pred HHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCccEEEeCCEEecC
Confidence 432 1 12467789999999999999999999855688888776 556799999987654
No 21
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.11 E-value=2.3e-09 Score=120.68 Aligned_cols=153 Identities=15% Similarity=0.225 Sum_probs=97.5
Q ss_pred CCcceEEEec-CCeEEEcCCCCCh----HHHHHHHHHHhCC-CccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHH
Q 009940 220 DCGNHRFVAQ-GEALIVDPGCRSE----FHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMR 293 (522)
Q Consensus 220 g~~~~~~l~~-g~~iLIDtG~~~~----~~~~L~~~~~~~~-~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~ 293 (522)
|++.++++.+ ++.+|||||.... ....+...++..+ +++++++||.|.||+||+..+.+.+|..+++.++....
T Consensus 448 GqGdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~~~~ 527 (662)
T TIGR00361 448 GQGLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVKRLVIPKGFVE 527 (662)
T ss_pred CCceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCccEEEeccchhh
Confidence 3445555543 5689999996421 1233445555433 27899999999999999999999988778887654211
Q ss_pred HhccCCCCCCceecCCCceEEECCEEEEEEeCCC-C----CCCCeEEEeC--CCCEEEEcccccCCCCcccccCCCCCHH
Q 009940 294 RIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPG-H----TDGHVALLHA--STNSLIVGDHCVGQGSAVLDITAGGNMT 366 (522)
Q Consensus 294 ~l~~~~~~~~~~~l~~g~~l~lgg~~l~vi~tPG-H----T~g~i~l~~~--~~~vLftGD~l~~~~~~~~~~~~~~~~~ 366 (522)
. ......+..|+.+++++.++++++.+. . ..+++++.+. +.++||+||+=. ..+
T Consensus 528 ----~--~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~-------------~~E 588 (662)
T TIGR00361 528 ----E--GVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEA-------------EGE 588 (662)
T ss_pred ----C--CCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCH-------------HHH
Confidence 0 123456788999999999999996331 1 2344555543 346999999710 111
Q ss_pred HHHHHHHHHhcCCCcE-EEcCCCCCcCC
Q 009940 367 DYFQSTYKFLELSPHA-LIPMHGRVNLW 393 (522)
Q Consensus 367 ~~~~SL~~l~~l~~~~-ivPgHG~~~~~ 393 (522)
+ .-++....++.|+ .+|.||.-...
T Consensus 589 ~--~l~~~~~~l~~dvLk~~HHGS~~Ss 614 (662)
T TIGR00361 589 Q--EVMRVFPNIKADVLQVGHHGSKTST 614 (662)
T ss_pred H--HHHhcccCcCccEEEeCCCCCCCCC
Confidence 1 1112223456776 58888876543
No 22
>PRK02113 putative hydrolase; Provisional
Probab=99.07 E-value=2.4e-09 Score=106.37 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=82.2
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHh--CCCCEEEEcHhHHHHhccCC--------
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC--NPDAILLAHENTMRRIGKDD-------- 299 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~--~p~a~V~a~~~~~~~l~~~~-------- 299 (522)
+..+|||+|.+.. .++.+. ...++++|++||.|.||++|+..+... ....+||+++...+.+....
T Consensus 44 ~~~iLiD~G~g~~--~~l~~~--~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 119 (252)
T PRK02113 44 GARILIDCGPDFR--EQMLRL--PFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMPYCFVEHS 119 (252)
T ss_pred CeEEEEECCchHH--HHHHhc--CccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCCeeeccCC
Confidence 5689999998643 233332 456778999999999999999877532 24688999998877664321
Q ss_pred CC----CCceecCCCceEEECCEEEEEEeCCCCCC-CCeEEEeCCCCEEEEcccc
Q 009940 300 WS----LGYTSVSGSEDICVGGQRLTVVFSPGHTD-GHVALLHASTNSLIVGDHC 349 (522)
Q Consensus 300 ~~----~~~~~l~~g~~l~lgg~~l~vi~tPGHT~-g~i~l~~~~~~vLftGD~l 349 (522)
++ ..+..++.|+.+++++.+++.+.+. |++ ..++|.+ ++++|+||+-
T Consensus 120 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i--~~i~y~~Dt~ 171 (252)
T PRK02113 120 YPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--GKMAYITDML 171 (252)
T ss_pred CCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEe--CCEEEccCCC
Confidence 11 2346678899999999999988776 653 4567777 5899999974
No 23
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.07 E-value=6.6e-10 Score=123.42 Aligned_cols=128 Identities=17% Similarity=0.166 Sum_probs=84.2
Q ss_pred cceEEEe--cCCeEEEcCCCCChH-HHHHHHHH----HhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHH
Q 009940 222 GNHRFVA--QGEALIVDPGCRSEF-HEELLKVV----ASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRR 294 (522)
Q Consensus 222 ~~~~~l~--~g~~iLIDtG~~~~~-~~~L~~~~----~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~ 294 (522)
+.|||++ .+..+|||||..... ........ ....++++||+||.|.||+|++..+.+...+.+||+++.+.+.
T Consensus 187 G~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T~pT~~l 266 (630)
T TIGR03675 187 GRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYGYDGPVYCTPPTRDL 266 (630)
T ss_pred CCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhCCCCceeecHHHHHH
Confidence 3455555 345899999976542 11110111 1134577999999999999999999875447899999876543
Q ss_pred hc-----------cCCCC------------CCceecCCCceEEE-CCEEEEEEeCCCCCCCCeEEEe--CC--CCEEEEc
Q 009940 295 IG-----------KDDWS------------LGYTSVSGSEDICV-GGQRLTVVFSPGHTDGHVALLH--AS--TNSLIVG 346 (522)
Q Consensus 295 l~-----------~~~~~------------~~~~~l~~g~~l~l-gg~~l~vi~tPGHT~g~i~l~~--~~--~~vLftG 346 (522)
+. ..... ....++..++.+++ ++.+++++. .||++|+.++.+ .+ .+++|+|
T Consensus 267 ~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~-AGHilGsa~~~~~i~dg~~~IvYTG 345 (630)
T TIGR03675 267 MTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYN-AGHILGSAIAHLHIGDGLYNIVYTG 345 (630)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEec-CccccCceEEEEEECCCCEEEEEeC
Confidence 21 01111 12356777888888 466777664 599999987654 33 3699999
Q ss_pred cccc
Q 009940 347 DHCV 350 (522)
Q Consensus 347 D~l~ 350 (522)
|.-.
T Consensus 346 D~~~ 349 (630)
T TIGR03675 346 DFKY 349 (630)
T ss_pred CCCC
Confidence 9754
No 24
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.06 E-value=2.5e-09 Score=106.18 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=79.2
Q ss_pred cCCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHh-CCCCEEEEcHhHHH---HhccCCCCCCc
Q 009940 229 QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMR---RIGKDDWSLGY 304 (522)
Q Consensus 229 ~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~-~p~a~V~a~~~~~~---~l~~~~~~~~~ 304 (522)
++..+|||+|... +.+. ....++++|++||.|.||++|+..+... .+.++||+++.... .+.... ...+
T Consensus 45 ~~~~iLiD~G~~~-----~~~~-~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~~~ 117 (250)
T PRK11244 45 NGARTLIDAGLPD-----LAER-FPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDLFKHPG-ILDF 117 (250)
T ss_pred CCCEEEEECCChH-----Hhhc-CCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHHHhcCcc-cccc
Confidence 3558999999532 2221 2345778999999999999999877432 34678999875421 111111 1122
Q ss_pred -eecCCCceEEECCEEEEEEeCCCCCCCCeEEEeCC--CCEEEEcccc
Q 009940 305 -TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS--TNSLIVGDHC 349 (522)
Q Consensus 305 -~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~--~~vLftGD~l 349 (522)
..+++++.+.+++.+++.+.++ |+.++++|.+.. .+++|+||+.
T Consensus 118 ~~~l~~~~~~~~~~~~I~~~~~~-H~~~s~g~~i~~~~~~i~ysgDt~ 164 (250)
T PRK11244 118 SHPLEPFEPFDLGGLQVTPLPLN-HSKLTFGYLLETAHSRVAYLTDTV 164 (250)
T ss_pred ccccCCCCCeeECCEEEEEEeeC-CCcceeEEEEecCCeEEEEEcCCC
Confidence 3477889999999888888774 888899988754 3699999974
No 25
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.04 E-value=1.3e-09 Score=111.50 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=73.6
Q ss_pred CeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHh------CCCCEEEEcHhHHHHhccC------
Q 009940 231 EALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMRRIGKD------ 298 (522)
Q Consensus 231 ~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~------~p~a~V~a~~~~~~~l~~~------ 298 (522)
+.+|||||.+.. ..+.+...+..++++||+||.|.||++|+..+... ....+||+++...+.+...
T Consensus 31 ~~iLiD~G~g~~--~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~ 108 (303)
T TIGR02649 31 GLWLFDCGEGTQ--HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGS 108 (303)
T ss_pred CEEEEECCccHH--HHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHhccc
Confidence 579999998864 34444333345678999999999999999876431 1247899998776654321
Q ss_pred --CCCCCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEeC
Q 009940 299 --DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 338 (522)
Q Consensus 299 --~~~~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~ 338 (522)
.+......+.+++.+..++.+++.+.+. |+..+++|.+.
T Consensus 109 ~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 149 (303)
T TIGR02649 109 WTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIE 149 (303)
T ss_pred ccCCceEEEEcCCCceEecCCeEEEEEEcc-CccceEEEEEe
Confidence 1122345577788888888788887775 77778888764
No 26
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.02 E-value=3.1e-09 Score=104.73 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=78.5
Q ss_pred cCCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHh-CCCCEEEEcHhHHHH---hccCCCCCCc
Q 009940 229 QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMRR---IGKDDWSLGY 304 (522)
Q Consensus 229 ~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~-~p~a~V~a~~~~~~~---l~~~~~~~~~ 304 (522)
++..+|||+|... +.+. ....++++|++||.|.||++|+..+... .+..+||+++.+... +..... ..+
T Consensus 35 ~~~~iliD~G~~~-----~~~~-~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~ 107 (238)
T TIGR03307 35 NGARTLIDAGLTD-----LAER-FPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPGI-LDF 107 (238)
T ss_pred CCcEEEEECCChh-----Hhhc-cCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHHhcCccc-ccc
Confidence 3568999999532 2211 2345678999999999999999766443 246889998765321 111111 122
Q ss_pred -eecCCCceEEECCEEEEEEeCCCCCCCCeEEEeC--CCCEEEEcccc
Q 009940 305 -TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHC 349 (522)
Q Consensus 305 -~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~~~vLftGD~l 349 (522)
..+..++.+.+++.+++.+.+. |+.++++|.+. +.+++|+||+-
T Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 108 SKPLEAFEPFDLGGLRVTPLPLV-HSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred cccccCCceEEECCEEEEEEecC-CCCcceEEEEecCCcEEEEEecCC
Confidence 2377889999999888888775 88888888875 34699999973
No 27
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.02 E-value=1.3e-09 Score=110.99 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHh------CCCCEEEEcHhHHHHhcc------
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMRRIGK------ 297 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~------~p~a~V~a~~~~~~~l~~------ 297 (522)
+..+|||+|.+.. ..+.+......++++||+||.|.||++|+..+... ....+||+++...+.+..
T Consensus 27 ~~~iLiD~G~g~~--~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~ 104 (299)
T TIGR02651 27 GELWLFDCGEGTQ--RQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSY 104 (299)
T ss_pred CeEEEEECCHHHH--HHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHHHcc
Confidence 5689999997643 33333322334577999999999999999887642 125679999877655432
Q ss_pred C--CCCCCceecCCCc-eEEECCEEEEEEeCCCCCCCCeEEEeC
Q 009940 298 D--DWSLGYTSVSGSE-DICVGGQRLTVVFSPGHTDGHVALLHA 338 (522)
Q Consensus 298 ~--~~~~~~~~l~~g~-~l~lgg~~l~vi~tPGHT~g~i~l~~~ 338 (522)
. .+......+.+++ .+..++.+++.+.+. |+..+++|.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 147 (299)
T TIGR02651 105 TYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFE 147 (299)
T ss_pred cCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEE
Confidence 1 1122335677787 588899899988887 77777777653
No 28
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.94 E-value=5e-09 Score=106.87 Aligned_cols=114 Identities=15% Similarity=0.220 Sum_probs=80.7
Q ss_pred eEEEcCCCCChHHHHHHHH-------HHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCC-----
Q 009940 232 ALIVDPGCRSEFHEELLKV-------VASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD----- 299 (522)
Q Consensus 232 ~iLIDtG~~~~~~~~L~~~-------~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~----- 299 (522)
.||||+|++.. .++... .....++++||+||.|.||+.|+..+++.. ..+||+++.+.+.+....
T Consensus 50 ~iLID~Gpd~r--~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~-~lpVya~~~t~~~L~~~~~~~~~ 126 (302)
T TIGR02108 50 WVLLNASPDIR--QQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ-PFTLYATEMVLQDLSDNPIFNVL 126 (302)
T ss_pred EEEEECCHHHH--HHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC-CceEEECHHHHHHHHhCCCcccc
Confidence 89999998754 233333 123556889999999999999999997654 799999999998885321
Q ss_pred --CCCCceecCCCceEEEC-----CEEEEEEeCCC-------C------CCCCeEEEeCC----CCEEEEccc
Q 009940 300 --WSLGYTSVSGSEDICVG-----GQRLTVVFSPG-------H------TDGHVALLHAS----TNSLIVGDH 348 (522)
Q Consensus 300 --~~~~~~~l~~g~~l~lg-----g~~l~vi~tPG-------H------T~g~i~l~~~~----~~vLftGD~ 348 (522)
+......++.++.+.++ +.+|+.+.++. | ..+.++|.+.. .++.|++|+
T Consensus 127 ~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~ 199 (302)
T TIGR02108 127 DHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGC 199 (302)
T ss_pred chhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCC
Confidence 11122456677777664 47888888871 3 23567777753 359999996
No 29
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=98.92 E-value=7.5e-09 Score=105.70 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=80.9
Q ss_pred eEEEcCCCCChHHHHHHHHH-------HhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccC-C-CC-
Q 009940 232 ALIVDPGCRSEFHEELLKVV-------ASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD-D-WS- 301 (522)
Q Consensus 232 ~iLIDtG~~~~~~~~L~~~~-------~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~-~-~~- 301 (522)
.+|||+|++.. .++.+.. ....++++||+||.|+||+.|+..|+.. ...+||+++.+.+.+... . ++
T Consensus 51 ~iLiD~G~g~~--~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~-~~l~Vyg~~~~~~~l~~~~~~f~~ 127 (302)
T PRK05184 51 WVLLNASPDIR--QQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREG-QPFPVYATPAVLEDLSTGFPIFNV 127 (302)
T ss_pred EEEEECChhHH--HHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccC-CCeEEEeCHHHHHHHHhcCCcccc
Confidence 59999997754 3444431 1334688999999999999999998654 478999999988776542 1 11
Q ss_pred ------CCceecCCCceEEEC---CEEEEEEeCC------------CCCCCCeEEEeC--C--CCEEEEccc
Q 009940 302 ------LGYTSVSGSEDICVG---GQRLTVVFSP------------GHTDGHVALLHA--S--TNSLIVGDH 348 (522)
Q Consensus 302 ------~~~~~l~~g~~l~lg---g~~l~vi~tP------------GHT~g~i~l~~~--~--~~vLftGD~ 348 (522)
..+..+..++.+.++ +.+|+.+.++ -|....++|.+. . .+++|++|.
T Consensus 128 ~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~ 199 (302)
T PRK05184 128 LDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGL 199 (302)
T ss_pred cccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCC
Confidence 123467778888886 7888888775 145567888883 2 358898775
No 30
>PRK04286 hypothetical protein; Provisional
Probab=98.90 E-value=3.1e-08 Score=101.05 Aligned_cols=129 Identities=11% Similarity=0.121 Sum_probs=72.9
Q ss_pred CCcceEEEe--cCCeEEEcCCCCC---------------hHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHH-----
Q 009940 220 DCGNHRFVA--QGEALIVDPGCRS---------------EFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQ----- 277 (522)
Q Consensus 220 g~~~~~~l~--~g~~iLIDtG~~~---------------~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~----- 277 (522)
|..++++++ .+..||||+|... ...+.+.++...+.++++||+||.|.||++|...+.
T Consensus 12 g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~ 91 (298)
T PRK04286 12 GVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSD 91 (298)
T ss_pred CceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCcccccccccc
Confidence 333444444 2458999999542 111233344445667889999999999999886641
Q ss_pred HhCCCCEEEEcHhHHH-----------HhccCCCC------CCceecCCCceEEECCEEEEEEeCCCCCCC--CeEEE--
Q 009940 278 KCNPDAILLAHENTMR-----------RIGKDDWS------LGYTSVSGSEDICVGGQRLTVVFSPGHTDG--HVALL-- 336 (522)
Q Consensus 278 ~~~p~a~V~a~~~~~~-----------~l~~~~~~------~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g--~i~l~-- 336 (522)
+++ ..++|.++.... ......+. .....+.+++.+.+|+.++++...-.|... .+++.
T Consensus 92 ~~~-~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~ 170 (298)
T PRK04286 92 EEI-PKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIM 170 (298)
T ss_pred ccc-hHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEE
Confidence 111 223333322210 01001110 123456788899999988887743357532 33332
Q ss_pred --e--CCCCEEEEcccc
Q 009940 337 --H--ASTNSLIVGDHC 349 (522)
Q Consensus 337 --~--~~~~vLftGD~l 349 (522)
+ .+.+++|+||+-
T Consensus 171 ~ri~~gg~~~~~~gDt~ 187 (298)
T PRK04286 171 VRISDGDESFVFASDVQ 187 (298)
T ss_pred EEEEeCCEEEEEECCCC
Confidence 2 334799999996
No 31
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.89 E-value=2.1e-08 Score=101.04 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=96.6
Q ss_pred CCcceEEEec-CCeEEEcCCCCChHHHHHHHHHHhC--CCccEEEEcCCCccccCCHHHHHHhCCCCEEEE--cHhHHHH
Q 009940 220 DCGNHRFVAQ-GEALIVDPGCRSEFHEELLKVVASL--PRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLA--HENTMRR 294 (522)
Q Consensus 220 g~~~~~~l~~-g~~iLIDtG~~~~~~~~L~~~~~~~--~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a--~~~~~~~ 294 (522)
|+..+.++.. +..+++|||.... ...+...+++. .+++.+|+||.|.||+||+..+.+.++--++++ .......
T Consensus 52 Gqg~a~li~~~~~~~l~dtg~~~~-~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~ 130 (293)
T COG2333 52 GQGLATLIRSEGKTILYDTGNSMG-QDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTST 130 (293)
T ss_pred CCCeEEEEeeCCceEEeecCcccC-ceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccch
Confidence 3444555554 4489999998411 12444455544 457899999999999999999998543334444 3322111
Q ss_pred hccCCCCCCceecCCCceEEECCEEEEEEeCCCCC-----CCCeEEEeC--CCCEEEEcccccCCCCcccccCCCCCHHH
Q 009940 295 IGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHT-----DGHVALLHA--STNSLIVGDHCVGQGSAVLDITAGGNMTD 367 (522)
Q Consensus 295 l~~~~~~~~~~~l~~g~~l~lgg~~l~vi~tPGHT-----~g~i~l~~~--~~~vLftGD~l~~~~~~~~~~~~~~~~~~ 367 (522)
...............|+.+.+++..++++.-++.+ ..++++++. ...+||+||.= ...+
T Consensus 131 ~~~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e--------------~~~E 196 (293)
T COG2333 131 FVLRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLE--------------EKGE 196 (293)
T ss_pred hhhhhcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCCC--------------chhH
Confidence 10111234566778899999999999999655433 345566654 34699999961 1111
Q ss_pred HHHHHHHHhcCCCcEE-EcCCCCCcCCh
Q 009940 368 YFQSTYKFLELSPHAL-IPMHGRVNLWP 394 (522)
Q Consensus 368 ~~~SL~~l~~l~~~~i-vPgHG~~~~~~ 394 (522)
..-++.-.++..+++ ++.||.-....
T Consensus 197 -~~l~~~~~~l~~dVLkV~HHGS~tSss 223 (293)
T COG2333 197 -KLLKKYGPDLRADVLKVGHHGSKTSSS 223 (293)
T ss_pred -HHHHhhCCCccceEEEeccCCccccCc
Confidence 111223334567775 77777765443
No 32
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.87 E-value=2.2e-09 Score=101.52 Aligned_cols=116 Identities=21% Similarity=0.334 Sum_probs=78.8
Q ss_pred eEEEcCCCCChHHHHHH-HHHH---hCCCccEEEEcCCCccccCCHHHHHH---hCCCCEEEEcHhHHHHhc--cCC---
Q 009940 232 ALIVDPGCRSEFHEELL-KVVA---SLPRKLIVFVTHHHRDHVDGLSIIQK---CNPDAILLAHENTMRRIG--KDD--- 299 (522)
Q Consensus 232 ~iLIDtG~~~~~~~~L~-~~~~---~~~~i~~IiiTH~H~DHiGG~~~l~~---~~p~a~V~a~~~~~~~l~--~~~--- 299 (522)
.+|||||.+.. .-.+. +... .+.++++|++||.|.||+.|+..+.. ..++ +||+++...+.+. ...
T Consensus 2 ~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~ 79 (194)
T PF12706_consen 2 RILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILD 79 (194)
T ss_dssp EEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHT
T ss_pred EEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhccccc
Confidence 58999998754 11122 1212 22367799999999999999766643 2334 9999998887766 221
Q ss_pred -CC----CCceecCCCceEEECCEEEEEEeCCCCCCCCeE----EEeC--CCCEEEEccccc
Q 009940 300 -WS----LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVA----LLHA--STNSLIVGDHCV 350 (522)
Q Consensus 300 -~~----~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~----l~~~--~~~vLftGD~l~ 350 (522)
+. .....+..++.+++++.+++.+.++ |..+..+ |.+. +.+++|+||+-.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~~~~~g~~i~~~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 80 LYPEEDNFDIIEISPGDEFEIGDFRITPFPAN-HGPPSYGGNKGFVIEPDGKKIFYSGDTNY 140 (194)
T ss_dssp TCCTTSGEEEEEECTTEEEEETTEEEEEEEEE-SSSCCEEECCEEEEEETTEEEEEETSSSS
T ss_pred ccccccceeEEEeccCceEEeceEEEEEEecc-ccccccccCceEEEecCCcceEEeeccch
Confidence 11 1235677888999999999999776 7777765 6554 567999999853
No 33
>PRK02126 ribonuclease Z; Provisional
Probab=98.86 E-value=1.9e-08 Score=104.04 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=76.2
Q ss_pred cccEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhC----C
Q 009940 206 TTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCN----P 281 (522)
Q Consensus 206 ~~N~~~i~~~~~~~g~~~~~~l~~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~----p 281 (522)
.+|+|++..+. ++..+|||||. ...+.+ ..+.++.+|++||.|.||++|+..|.... +
T Consensus 15 ~dn~~~l~~~~------------~~~~iLiD~G~----~~~l~~--~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~ 76 (334)
T PRK02126 15 DDPGLYVDFLF------------ERRALLFDLGD----LHHLPP--RELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPR 76 (334)
T ss_pred CCcEEEEEECC------------CCeEEEEcCCC----HHHHhh--cCCCccCEEEEcCCChhHhCcHHHHHHHhccCCC
Confidence 45777776432 25689999998 223332 24567889999999999999999997653 4
Q ss_pred CCEEEEcHhHHHHhccCC----C------CCCc----ee--------------------------cCCCceEEECCEEEE
Q 009940 282 DAILLAHENTMRRIGKDD----W------SLGY----TS--------------------------VSGSEDICVGGQRLT 321 (522)
Q Consensus 282 ~a~V~a~~~~~~~l~~~~----~------~~~~----~~--------------------------l~~g~~l~lgg~~l~ 321 (522)
.++||+++.+.+.+...- + ...+ .. ..++..+..++.+|+
T Consensus 77 ~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 156 (334)
T PRK02126 77 RLRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVR 156 (334)
T ss_pred CeEEEECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEE
Confidence 679999998877553211 1 0011 11 123444667788888
Q ss_pred EEeCCCCCCCCeEEEeC
Q 009940 322 VVFSPGHTDGHVALLHA 338 (522)
Q Consensus 322 vi~tPGHT~g~i~l~~~ 338 (522)
++.+. |+.-+++|.+.
T Consensus 157 a~~~~-H~vp~~gy~~~ 172 (334)
T PRK02126 157 AAFLD-HGIPCLAFALE 172 (334)
T ss_pred EEEcc-CCCceeEEEEE
Confidence 88887 87777777664
No 34
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.85 E-value=2.4e-08 Score=103.84 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=95.5
Q ss_pred hCCCccEEEEcCCCccccC--CHHHHHHhC-CCCEEEEcHhHHHHhccCCCC-CCceecCCCceEEECCEEEEEEeC---
Q 009940 253 SLPRKLIVFVTHHHRDHVD--GLSIIQKCN-PDAILLAHENTMRRIGKDDWS-LGYTSVSGSEDICVGGQRLTVVFS--- 325 (522)
Q Consensus 253 ~~~~i~~IiiTH~H~DHiG--G~~~l~~~~-p~a~V~a~~~~~~~l~~~~~~-~~~~~l~~g~~l~lgg~~l~vi~t--- 325 (522)
.+.++++|++||.|.||+. .+..+.+.. ++++++++....+.+.....+ .....+..|+.+.+++.+|+++.+
T Consensus 106 ~i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~ 185 (355)
T PRK11709 106 AIREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDR 185 (355)
T ss_pred HCCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEecccc
Confidence 3456789999999999995 334454443 468899988877766544332 245678999999999999888855
Q ss_pred ------C-CCCCC-----------CeEEEe--CCCCEEEEcccccCC-------CC-ccccc-CCCC------CHHHHHH
Q 009940 326 ------P-GHTDG-----------HVALLH--ASTNSLIVGDHCVGQ-------GS-AVLDI-TAGG------NMTDYFQ 370 (522)
Q Consensus 326 ------P-GHT~g-----------~i~l~~--~~~~vLftGD~l~~~-------~~-~~~~~-~~~~------~~~~~~~ 370 (522)
| .|+.. .++|++ ++.+++|+||+.+.. .. ..+.. +.+. .-....+
T Consensus 186 ~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~~~~iDvall~iG~~p~~~~~hm~p~e 265 (355)
T PRK11709 186 TALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGNDHQIDVALGSYGENPRGITDKMTSID 265 (355)
T ss_pred ccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHhcCCCCEEEecCCCCCCCCcCCCCHHH
Confidence 1 22211 245555 556799999986432 00 11100 1111 0112335
Q ss_pred HHHHHhcCCCcEEEcCCCCCcCCh---HHHHHHHHHHHHHH
Q 009940 371 STYKFLELSPHALIPMHGRVNLWP---KHMLCGYLKNRRAR 408 (522)
Q Consensus 371 SL~~l~~l~~~~ivPgHG~~~~~~---~~~i~~~l~~~~~r 408 (522)
+++-...++++.++|-|-..+... .+.+.++.+.+++|
T Consensus 266 a~~~a~~l~ak~vIpiH~dtf~~~~~dp~~~~~~~~~~~~~ 306 (355)
T PRK11709 266 ILRMAESLNAKVVIPVHHDIWSNFQADPQEILVLWKMRKDR 306 (355)
T ss_pred HHHHHHHcCCCEEEEEChhhccccccCHHHHHHHHHhhhhh
Confidence 555667788999999998775422 23344444444444
No 35
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.5e-08 Score=108.04 Aligned_cols=129 Identities=20% Similarity=0.206 Sum_probs=86.6
Q ss_pred CCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhcc--
Q 009940 220 DCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK-- 297 (522)
Q Consensus 220 g~~~~~~l~~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~-- 297 (522)
|.+|..+...+..+++|+|.................+++.+++||+|.||+|++..+....-+.+||+++.+...+.-
T Consensus 13 g~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~l 92 (427)
T COG1236 13 GRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLL 92 (427)
T ss_pred CcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHHHH
Confidence 333444444567999999987642210000000111467999999999999999998764224789999877654321
Q ss_pred ------C--CCC------------CCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEeC--CCCEEEEcccc
Q 009940 298 ------D--DWS------------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHC 349 (522)
Q Consensus 298 ------~--~~~------------~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~--~~~vLftGD~l 349 (522)
. ... ...+++.-|+.+++++.++++.+ .||.+|+..+.+. +++++|+||.-
T Consensus 93 ~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~-AGHilGsa~~~le~~~~~ilytGD~~ 165 (427)
T COG1236 93 GDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYN-AGHILGSAAILLEVDGGRILYTGDVK 165 (427)
T ss_pred HHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEec-CCCccceeEEEEEeCCceEEEEeccC
Confidence 0 000 12345888999999997666665 4899999998885 55699999974
No 36
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.9e-08 Score=97.73 Aligned_cols=148 Identities=22% Similarity=0.300 Sum_probs=94.1
Q ss_pred cCCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecC
Q 009940 229 QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (522)
Q Consensus 229 ~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~ 308 (522)
+++.+++|+|.+ .+.+.....++|+.+++||.|++|+|++..|. ..+++.+. .....+. .....++
T Consensus 103 ~~~v~v~~~gls-----~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~----~sp~l~~s--~e~~gr~---~~pt~l~ 168 (302)
T KOG4736|consen 103 GGDVVVVDTGLS-----VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFP----QSPILYHS--MEYIGRH---VTPTELD 168 (302)
T ss_pred CCceEEEecCCc-----hhhhcCcChhhcceeEEeccCccccccccccc----CCHHHhhh--hhhcCCc---cChhhhc
Confidence 345889999987 34555556678889999999999999998874 34443332 2222221 2234466
Q ss_pred CCceEEECCEEEEEEeCCCCCCCCeEEEeCC----CCEEEEcccccCCCCcc-cc-cCC---CCCHHHHHHHHHHHhcCC
Q 009940 309 GSEDICVGGQRLTVVFSPGHTDGHVALLHAS----TNSLIVGDHCVGQGSAV-LD-ITA---GGNMTDYFQSTYKFLELS 379 (522)
Q Consensus 309 ~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~----~~vLftGD~l~~~~~~~-~~-~~~---~~~~~~~~~SL~~l~~l~ 379 (522)
.+..++++ -.+++..|||||.-.+.+.+.. +.+.++||++-...... .+ ... ..+...-+++-++... =
T Consensus 169 e~~~~~l~-~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf~~~~dlde~d~i~~~e~s~d~~~kr~~r~~~v~-l 246 (302)
T KOG4736|consen 169 ERPYLKLS-PNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLFPREEDLDEKDDIMSQEGSEDNAAKRQSRNRYVC-L 246 (302)
T ss_pred cCCccccC-CceeEeeCCCCCCcceEEEEEeecccceEEEEeecccCCccccchhhhhhhccCCchhhhhhhhhcEEE-E
Confidence 77778887 3578889999999999888753 35999999864332111 10 000 0122222233233333 3
Q ss_pred CcEEEcCCCCCcC
Q 009940 380 PHALIPMHGRVNL 392 (522)
Q Consensus 380 ~~~ivPgHG~~~~ 392 (522)
+|+++||||+++.
T Consensus 247 ~D~ivpgHg~~f~ 259 (302)
T KOG4736|consen 247 ADWIVPGHGPPFR 259 (302)
T ss_pred eeeeecCCCCcee
Confidence 7899999999975
No 37
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.51 E-value=7.6e-07 Score=93.20 Aligned_cols=129 Identities=20% Similarity=0.171 Sum_probs=81.0
Q ss_pred cceEEEe-cC-CeEEEcCCCCChHH--HH---HHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHH
Q 009940 222 GNHRFVA-QG-EALIVDPGCRSEFH--EE---LLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRR 294 (522)
Q Consensus 222 ~~~~~l~-~g-~~iLIDtG~~~~~~--~~---L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~ 294 (522)
+-+++++ +. ..||+|||.+.... +. +.---.....+++|++||+|.||+|-++.|.+..-+-+||+++.+.+.
T Consensus 193 GRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~PTRDl 272 (637)
T COG1782 193 GRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTPPTRDL 272 (637)
T ss_pred cceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCCCCCeeeCCCcHHH
Confidence 3344444 33 48999999765421 10 100001122467999999999999999999876446699999888665
Q ss_pred hc-----------cCCCCCCc------------eecCCCceEEEC-CEEEEEEeCCCCCCCCeEEEeC--C--CCEEEEc
Q 009940 295 IG-----------KDDWSLGY------------TSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLHA--S--TNSLIVG 346 (522)
Q Consensus 295 l~-----------~~~~~~~~------------~~l~~g~~l~lg-g~~l~vi~tPGHT~g~i~l~~~--~--~~vLftG 346 (522)
+. ..+...+| .++.-|+.-++. +.++++++ .||--|+.+..+. + .+++|||
T Consensus 273 m~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~N-AGHILGSA~~HlHIGdGlyNi~yTG 351 (637)
T COG1782 273 MVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYN-AGHILGSAMAHLHIGDGLYNIVYTG 351 (637)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEec-ccchhcceeeEEEecCCceeEEEec
Confidence 41 11112222 345556655553 56666665 5899999887653 2 2699999
Q ss_pred ccccC
Q 009940 347 DHCVG 351 (522)
Q Consensus 347 D~l~~ 351 (522)
|.-+.
T Consensus 352 Dfk~~ 356 (637)
T COG1782 352 DFKFE 356 (637)
T ss_pred ccccc
Confidence 98543
No 38
>PRK00055 ribonuclease Z; Reviewed
Probab=98.25 E-value=1.4e-06 Score=86.84 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHh------CCCCEEEEcHhHHHHh
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMRRI 295 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~------~p~a~V~a~~~~~~~l 295 (522)
+..+|||+|.+.. ..+.+......++++|++||.|+||++|+..+... ....+||+++.....+
T Consensus 29 ~~~iLiD~G~g~~--~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~ 98 (270)
T PRK00055 29 GELFLFDCGEGTQ--RQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFV 98 (270)
T ss_pred CcEEEEECCHHHH--HHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHH
Confidence 5689999997642 23333222334678999999999999999877532 1356799987765543
No 39
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.21 E-value=5.2e-06 Score=76.80 Aligned_cols=93 Identities=24% Similarity=0.402 Sum_probs=52.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCC
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~ 309 (522)
+..|||||..... .......++++|++||.|.||+.-- .+++.. .....+..
T Consensus 16 g~~iliDP~~~~~------~~~~~~~~~D~IlisH~H~DH~~~~-~l~~~~---------------------~~~~vv~~ 67 (163)
T PF13483_consen 16 GKRILIDPWFSSV------GYAPPPPKADAILISHSHPDHFDPE-TLKRLD---------------------RDIHVVAP 67 (163)
T ss_dssp TEEEEES--TTT--------T-TSS-B-SEEEESSSSTTT-CCC-CCCCHH---------------------TSSEEE-T
T ss_pred CEEEEECCCCCcc------CcccccCCCCEEEECCCccccCChh-Hhhhcc---------------------cccEEEcc
Confidence 5589999996421 0111125677999999999999752 121111 12445556
Q ss_pred CceEEECCEEEEEEeC-----CCCCCC-CeEEEeC--CCCEEEEccccc
Q 009940 310 SEDICVGGQRLTVVFS-----PGHTDG-HVALLHA--STNSLIVGDHCV 350 (522)
Q Consensus 310 g~~l~lgg~~l~vi~t-----PGHT~g-~i~l~~~--~~~vLftGD~l~ 350 (522)
++.+++++.+++.+.+ .|+..+ .++|++. +.++++.||+..
T Consensus 68 ~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~ 116 (163)
T PF13483_consen 68 GGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGF 116 (163)
T ss_dssp TEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S
T ss_pred ceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCcc
Confidence 7888999988888854 355555 4556553 346999999864
No 40
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.15 E-value=3.7e-05 Score=76.72 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=88.9
Q ss_pred CCeEEEcCCCCChHHHHHH---HHHHhCCCccEEEEcCCCccccCCHHHHHHhCC-CCEEEEcHhHHHHhccCCC-CCCc
Q 009940 230 GEALIVDPGCRSEFHEELL---KVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP-DAILLAHENTMRRIGKDDW-SLGY 304 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~---~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p-~a~V~a~~~~~~~l~~~~~-~~~~ 304 (522)
+..|||||.........-. ........+++|++||.|.||++-......... ...++.++.....+..... ....
T Consensus 23 ~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 102 (258)
T COG2220 23 GKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLGAGDLLIRDGVEAERV 102 (258)
T ss_pred CEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHHHHHHHHhcCCCcceE
Confidence 4579999987653211000 112234567899999999999998776655433 3445555554344322222 2234
Q ss_pred eecCCCceEEECCEEEEEE---eCCC-CCC--------CCeEEEe--CCCCEEEEcccccCC-----CCcccc--cCCCC
Q 009940 305 TSVSGSEDICVGGQRLTVV---FSPG-HTD--------GHVALLH--ASTNSLIVGDHCVGQ-----GSAVLD--ITAGG 363 (522)
Q Consensus 305 ~~l~~g~~l~lgg~~l~vi---~tPG-HT~--------g~i~l~~--~~~~vLftGD~l~~~-----~~~~~~--~~~~~ 363 (522)
..+..++.+.+++.++.++ +.+. |++ ..+++.+ ++.++++.||+-+.. ..+.++ ..+.+
T Consensus 103 ~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~~~~~~~~~~~~DvallPig 182 (258)
T COG2220 103 HELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYLFLIIEELDGPVDVALLPIG 182 (258)
T ss_pred EeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHHHHhhhhhcCCccEEEeccC
Confidence 5567788899988775444 3222 222 2344444 456799999994210 011011 11111
Q ss_pred C-----HHHHHHHHHHHhcCCCcEEEcCCCC
Q 009940 364 N-----MTDYFQSTYKFLELSPHALIPMHGR 389 (522)
Q Consensus 364 ~-----~~~~~~SL~~l~~l~~~~ivPgHG~ 389 (522)
. .....+..+....++++.++|.|-.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 183 GYPNATMMPPEAAVAAAEVLRPKRVIPMHYG 213 (258)
T ss_pred CCCCCccCCHHHHHHHHHHhcCCeEEeeccc
Confidence 1 2223333443466789999999976
No 41
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=98.11 E-value=2.8e-06 Score=75.04 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=91.6
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
.++|-|+.+ ++||+||+..+..... .|.+|++.++. +|+ ..+++..++.
T Consensus 6 ~~ii~~~~~--~vLl~~r~~~~~~~~~---------~~~~pgG~i~~--~E~------------------~~~aa~REl~ 54 (134)
T PF00293_consen 6 GVIIFNEDG--KVLLIKRSRSPITFPG---------YWELPGGGIEP--GES------------------PEEAARRELK 54 (134)
T ss_dssp EEEEEETTT--EEEEEEESTTSSSSTT---------EEESSEEEECT--TSH------------------HHHHHHHHHH
T ss_pred EEEEEeCCc--EEEEEEecCCCCCCCC---------eEecceeeEEc--CCc------------------hhhhHHhhhh
Confidence 456677663 9999999999985555 99999999998 444 1257899999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC------CCCcccccccccHHHHHHHHHh
Q 009940 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAE 150 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~------~~~e~~~~~W~~~~~al~~l~~ 150 (522)
++.|+.+....+.....|.++. ..+.+..+.||++.++.+ +..|.....|+++.+++++...
T Consensus 55 EE~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 122 (134)
T PF00293_consen 55 EETGLDVSPLELLGLFSYPSPS--GDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLN 122 (134)
T ss_dssp HHHSEEEEEEEEEEEEEEEETT--TESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHT
T ss_pred hcccceecccccceeeeecccC--CCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhC
Confidence 9999999888889999999887 444679999999999988 3349999999999999997543
No 42
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.04 E-value=1.6e-05 Score=79.44 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=62.0
Q ss_pred cceEEEecCCeEEEc-CCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHH-------hCCCCEEEEcHhHHH
Q 009940 222 GNHRFVAQGEALIVD-PGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQK-------CNPDAILLAHENTMR 293 (522)
Q Consensus 222 ~~~~~l~~g~~iLID-tG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~-------~~p~a~V~a~~~~~~ 293 (522)
..+.++.....+|+| +|.+... . ++.+...++.||+||+|.||++|+..+.- ..+...||.++...+
T Consensus 10 ~~t~~~~~~~~ilfD~ag~g~~~--~---l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~ 84 (277)
T TIGR02650 10 FFSTIIYSPEEIIFDAAEEGSST--L---GGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNA 84 (277)
T ss_pred heEEEEECchhheehhhcccchh--H---HhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhH
Confidence 344555556689999 8876542 1 34455567899999999999999954432 223457998876443
Q ss_pred Hhc-------cC----CCCCCceecCCCceEEEC-C---EEEEEEeCCCCC
Q 009940 294 RIG-------KD----DWSLGYTSVSGSEDICVG-G---QRLTVVFSPGHT 329 (522)
Q Consensus 294 ~l~-------~~----~~~~~~~~l~~g~~l~lg-g---~~l~vi~tPGHT 329 (522)
..+ .. .+......+..|+.+.+. + ..++.+.|- |+
T Consensus 85 ~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~-H~ 134 (277)
T TIGR02650 85 AEEETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRK-HH 134 (277)
T ss_pred HHHHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccc-cc
Confidence 332 11 123344556667766665 2 455555553 55
No 43
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.74 E-value=0.0012 Score=64.17 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=65.0
Q ss_pred EEEecCC-eEEEcCCCCCh-----------HHHHHHHHH---Hh-CCCccEEEEcCCCccccCC---------HHHHHHh
Q 009940 225 RFVAQGE-ALIVDPGCRSE-----------FHEELLKVV---AS-LPRKLIVFVTHHHRDHVDG---------LSIIQKC 279 (522)
Q Consensus 225 ~~l~~g~-~iLIDtG~~~~-----------~~~~L~~~~---~~-~~~i~~IiiTH~H~DHiGG---------~~~l~~~ 279 (522)
.|+-+++ .||||+|-.-. ..+.+.+.. .. ..+...|.+||.|.||..- ...-++.
T Consensus 18 t~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~~ei 97 (304)
T COG2248 18 TFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETAKEI 97 (304)
T ss_pred heeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccchHHH
Confidence 3444444 79999994321 122232222 22 2344589999999999864 1111222
Q ss_pred CCCCEEEE-cHhH----------HHHhccCCCCCCceecCCCceEEECCEEEEEEeCCCCCCC-C-eE----EEe--CCC
Q 009940 280 NPDAILLA-HENT----------MRRIGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDG-H-VA----LLH--AST 340 (522)
Q Consensus 280 ~p~a~V~a-~~~~----------~~~l~~~~~~~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g-~-i~----l~~--~~~ 340 (522)
|.+-.+.+ |+.+ ..++.+......-..+.||.++++|+..+++-..--|-++ + ++ +.+ .+.
T Consensus 98 Y~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~ 177 (304)
T COG2248 98 YKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKS 177 (304)
T ss_pred hcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCe
Confidence 32323332 2211 0111111111123457799999999999998843335554 2 12 222 234
Q ss_pred CEEEEccc
Q 009940 341 NSLIVGDH 348 (522)
Q Consensus 341 ~vLftGD~ 348 (522)
.++|+.|.
T Consensus 178 ~i~faSDv 185 (304)
T COG2248 178 SIVFASDV 185 (304)
T ss_pred EEEEcccc
Confidence 69999997
No 44
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=97.73 E-value=0.00011 Score=65.09 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=73.0
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.++++.+...+.++||+||... ..+ .|++|++.++.-+.- ..++..++
T Consensus 4 ~~v~~~~~~~~~~vLL~~r~~~---~~~---------~w~~PgG~ve~~Es~--------------------~~aa~RE~ 51 (129)
T cd04664 4 VLVVPYRLTGEGRVLLLRRSDK---YAG---------FWQSVTGGIEDGESP--------------------AEAARREV 51 (129)
T ss_pred EEEEEEEeCCCCEEEEEEeCCC---CCC---------cccccCcccCCCCCH--------------------HHHHHHHH
Confidence 4455565423459999999876 333 999999998554332 37899999
Q ss_pred HHHcCCeeccCc-ceeecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHHHH
Q 009940 86 LEQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCL 148 (522)
Q Consensus 86 l~~~gl~l~~~~-l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~~l 148 (522)
.++.|+.+.... +..+..|++...-..+....-.+|++.+..+ ...|..+.+|+++.++.+++
T Consensus 52 ~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 119 (129)
T cd04664 52 AEETGLDPERLTLLDRGASIAFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALL 119 (129)
T ss_pred HHHHCCChhheEEEeecccccccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHH
Confidence 999999874332 2322223232210122445556788887765 24578899999999998753
No 45
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=97.67 E-value=0.00012 Score=73.32 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=76.7
Q ss_pred CCcceEEEecCCeEEEcCCCCChHH--HHHHH--HHHhCC----CccEEEEcCCCccccCCHHHHHHhC-CCCEEEEcHh
Q 009940 220 DCGNHRFVAQGEALIVDPGCRSEFH--EELLK--VVASLP----RKLIVFVTHHHRDHVDGLSIIQKCN-PDAILLAHEN 290 (522)
Q Consensus 220 g~~~~~~l~~g~~iLIDtG~~~~~~--~~L~~--~~~~~~----~i~~IiiTH~H~DHiGG~~~l~~~~-p~a~V~a~~~ 290 (522)
|.+|...-+.|+.|++|||.-.... +..-+ .+.+.+ -++.||+||.|.||+|.++++.+.- -+-+||++-.
T Consensus 16 GrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~P 95 (501)
T KOG1136|consen 16 GRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYP 95 (501)
T ss_pred CceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCceEEecc
Confidence 3344444456889999999643211 11111 111222 2458999999999999999998741 1567888644
Q ss_pred HHH----------HhccC-----CC-C--------CCceecCCCceEEEC-CEEEEEEeCCCCCCCCeEEEeC--CCCEE
Q 009940 291 TMR----------RIGKD-----DW-S--------LGYTSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLHA--STNSL 343 (522)
Q Consensus 291 ~~~----------~l~~~-----~~-~--------~~~~~l~~g~~l~lg-g~~l~vi~tPGHT~g~i~l~~~--~~~vL 343 (522)
+.. .+.-. ++ . -....+.-.+++.++ +..++.. -.||--|...|++. +..++
T Consensus 96 TkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~Iray-YAGHVLGAaMf~ikvGd~svv 174 (501)
T KOG1136|consen 96 TKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAY-YAGHVLGAAMFYIKVGDQSVV 174 (501)
T ss_pred hhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeee-ecccccceeEEEEEecceeEE
Confidence 322 11100 00 0 012344455666664 3344444 46999999999874 45799
Q ss_pred EEcccc
Q 009940 344 IVGDHC 349 (522)
Q Consensus 344 ftGD~l 349 (522)
|+||--
T Consensus 175 YTGDYn 180 (501)
T KOG1136|consen 175 YTGDYN 180 (501)
T ss_pred EecCcc
Confidence 999974
No 46
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=97.66 E-value=0.00012 Score=64.70 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=68.3
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeecc
Q 009940 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (522)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (522)
..++||++|+.. ..|.||++.++.-+.- .+++..++.++.|+....
T Consensus 14 ~~~vLLv~~~~~--------------~~w~~PgG~ve~~E~~--------------------~~aa~RE~~EEtG~~~~~ 59 (122)
T cd04666 14 EVEVLLVTSRRT--------------GRWIVPKGGPEKDESP--------------------AEAAAREAWEEAGVRGKI 59 (122)
T ss_pred ceEEEEEEecCC--------------CeEECCCCCcCCCCCH--------------------HHHHHHHHHHHhCCcccc
Confidence 469999998643 3899999999763322 378999999999998765
Q ss_pred C--cceeecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHHHHH
Q 009940 96 G--GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLA 149 (522)
Q Consensus 96 ~--~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~~l~ 149 (522)
. .+..+....+.. ..++.+...||.+..-.. ...|.....|+++.++++++.
T Consensus 60 ~~~~l~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 60 GKRPLGRFEYRKRSK--NRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred cceEEEEEEeeecCC--CCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcC
Confidence 4 333333322222 234578888888776444 334567899999999998754
No 47
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=97.65 E-value=0.00026 Score=72.08 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=46.6
Q ss_pred cCCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHh------CCCCEEEEcHhHHHHh
Q 009940 229 QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMRRI 295 (522)
Q Consensus 229 ~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~------~p~a~V~a~~~~~~~l 295 (522)
.++..|||||.+.. .++........++++|++||.|.||+.|+..+... .....||.++...+.+
T Consensus 28 ~~~~~L~DcGeGt~--~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~ 98 (292)
T COG1234 28 EGEKFLFDCGEGTQ--HQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFV 98 (292)
T ss_pred CCeeEEEECCHhHH--HHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhh
Confidence 46688999998764 45555555555788999999999999999865431 2236788887655443
No 48
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.65 E-value=0.00013 Score=63.63 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=70.3
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
|+|+++ + ++||+||++.+..... .|.||++.++.. |. ..+++.+++.
T Consensus 5 ~vi~~~---~-~vLL~rR~~~~~~~~g---------~w~lPgG~ve~g--E~------------------~~~aa~REl~ 51 (117)
T cd04691 5 GVLFSD---D-KVLLERRSLTKNADPG---------KLNIPGGHIEAG--ES------------------QEEALLREVQ 51 (117)
T ss_pred EEEEEC---C-EEEEEEeCCCCCCCCC---------eEECcceeecCC--CC------------------HHHHHHHHHH
Confidence 455553 3 8999999877655555 999999999863 33 1367999999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC--CCCcccccccccHHHHHHH
Q 009940 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCINC 147 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~--~~~e~~~~~W~~~~~al~~ 147 (522)
++.|+.. ..+..+.....+. .+..-..||++...++ ...|..+..|++..++...
T Consensus 52 EEtGl~~--~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~ 108 (117)
T cd04691 52 EELGVDP--LSYTYLCSLYHPT----SELQLLHYYVVTFWQGEIPAQEAAEVHWMTANDIVLA 108 (117)
T ss_pred HHHCCCc--ccceEEEEEeccC----CCeEEEEEEEEEEecCCCCcccccccEEcCHHHcchh
Confidence 9999984 2223333333233 2334456778887777 5578999999999887654
No 49
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=97.62 E-value=0.00016 Score=65.64 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=75.8
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.+++|.|.. | ++||+|+..+|. . +.|.||++.++..+.- ..++..++
T Consensus 15 v~~vI~~~~-g-~vLl~~R~~~p~--~---------g~w~lPGG~ve~gEs~--------------------~~aa~RE~ 61 (144)
T cd03430 15 IDLIVENED-G-QYLLGKRTNRPA--Q---------GYWFVPGGRIRKNETL--------------------TEAFERIA 61 (144)
T ss_pred EEEEEEeCC-C-eEEEEEccCCCC--C---------CcEECCCceecCCCCH--------------------HHHHHHHH
Confidence 456777653 4 999999876552 2 3899999999774322 26799999
Q ss_pred HHHcCCeeccC--c-ceeecccccCCCC--CCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHH
Q 009940 86 LEQLGFGVRDG--G-EWKLWKCVEEPEF--GPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 86 l~~~gl~l~~~--~-l~~~~~w~~~~~~--~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~ 146 (522)
.++.|+.+... . +..+.+..+...+ +....+...+|.+...++ .+.|..+.+|+++.+..+
T Consensus 62 ~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 131 (144)
T cd03430 62 KDELGLEFLISDAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLA 131 (144)
T ss_pred HHHHCCCcccccceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhc
Confidence 99999998766 3 3344444332211 233467788888888776 456899999999988765
No 50
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=97.57 E-value=0.00012 Score=67.40 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=72.0
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
..+++.+..++.++||+||++..+.... .|.||++.++..+ |+ ..+++..|+
T Consensus 5 v~v~l~~~~~~~~vLL~~R~~~~~~~~g---------~w~lPGG~ve~gd-Es------------------~~eaa~REl 56 (157)
T cd03426 5 VLVLLVEREGELRVLLTKRASHLRSHPG---------QVAFPGGKVDPGD-ED------------------PVATALREA 56 (157)
T ss_pred EEEEEEeCCCceEEEEEEcccccccCCC---------cEECCCCCcCCCc-CC------------------HHHHHHHHH
Confidence 3466777776679999999987764444 8999999998741 22 137799999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHH
Q 009940 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~ 146 (522)
.++.|+....-.+........ ... .+...+|++..... +..|..+..|+++.++.+
T Consensus 57 ~EEtGl~~~~~~~l~~~~~~~----~~~-~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 117 (157)
T cd03426 57 EEEIGLPPDSVEVLGRLPPYY----TRS-GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLD 117 (157)
T ss_pred HHHhCCCccceEEEEECCCcc----ccC-CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhC
Confidence 999999876432222111111 111 34445566665442 456889999999988876
No 51
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=97.56 E-value=0.00028 Score=62.09 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=73.4
Q ss_pred hhhcCCC-CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 8 LILKNPL-NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 8 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
+||-++. ++.++||+|++.. +.|.||++.++.. |. ...++..++.
T Consensus 6 ~ii~~~~~~~~~vLl~~~~~~--------------~~w~~PgG~v~~g--Es------------------~~~aa~REl~ 51 (131)
T cd03673 6 GVVFRGSDGGIEVLLIHRPRG--------------DDWSLPKGKLEPG--ET------------------PPEAAVREVE 51 (131)
T ss_pred EEEEEccCCCeEEEEEEcCCC--------------CcccCCCCccCCC--CC------------------HHHHHHHHHh
Confidence 3344442 2359999999754 3899999999753 33 1368999999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHHHH
Q 009940 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~l~ 149 (522)
++.|+.........--+|..+.. +......+.||++....+ +..|..+.+|+++.++.+.+.
T Consensus 52 EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 52 EETGIRAEVGDPLGTIRYWFSSS-GKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred hhhCCceEecceEEEEEEeccCC-CCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcC
Confidence 99999876554333333433321 224566788888887766 456888999999999877543
No 52
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=97.53 E-value=0.00022 Score=62.96 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=72.3
Q ss_pred hhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHH
Q 009940 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQ 88 (522)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (522)
+++.-.+..++||+|++. . .|.+|++.++. +|+ ..++++.++.++
T Consensus 9 i~~~~~~~~~vLl~~~~~------~---------~w~~PgG~ve~--gEs------------------~~~aa~REl~EE 53 (130)
T cd03428 9 IYRRLNNEIEYLLLQASY------G---------HWDFPKGHVEP--GED------------------DLEAALRETEEE 53 (130)
T ss_pred EEEecCCCceEEEEEccC------C---------cCcCCcCCCCC--CCC------------------HHHHHHHHHHHH
Confidence 333334466899999886 2 79999999875 333 136899999999
Q ss_pred cCCeeccCcce-eecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHHHHH
Q 009940 89 LGFGVRDGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLA 149 (522)
Q Consensus 89 ~gl~l~~~~l~-~~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~~l~ 149 (522)
.|+.+....+. .|....... ....++.+.||++....+ .+.|..+..|+++.++.+.+.
T Consensus 54 tGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 54 TGITAEQLFIVLGFKETLNYQ--VRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred HCCChhhhhhhccceeEEEcc--ccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcC
Confidence 99987765543 122222211 234678888999998744 226899999999999887643
No 53
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=97.52 E-value=0.0002 Score=64.76 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
++|-|.. + ++||+||..+|+ .. .|.||++.+++.+ . ...++..++.+
T Consensus 18 ~vv~~~~-~-~vLL~~r~~~~~--~~---------~w~lPgG~ve~gE--t------------------~~~aa~REl~E 64 (142)
T cd04700 18 AVILNER-N-DVLLVQEKGGPK--KG---------LWHIPSGAVEDGE--F------------------PQDAAVREACE 64 (142)
T ss_pred EEEEeCC-C-cEEEEEEcCCCC--CC---------eEECCceecCCCC--C------------------HHHHHHHHHHH
Confidence 3444433 4 899999876663 34 9999999998533 3 13779999999
Q ss_pred HcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHHHHh
Q 009940 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAE 150 (522)
Q Consensus 88 ~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~l~~ 150 (522)
+.|+.+..... ...|.... .....+-+.+|++....+ ...|..+..|+++.++.+++.+
T Consensus 65 EtGl~~~~~~~--~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 128 (142)
T cd04700 65 ETGLRVRPVKF--LGTYLGRF--DDGVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQ 128 (142)
T ss_pred hhCceeeccEE--EEEEEEEc--CCCcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccc
Confidence 99998765543 33332111 112334456788887554 2468889999999999887643
No 54
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.50 E-value=0.00026 Score=62.19 Aligned_cols=106 Identities=15% Similarity=0.236 Sum_probs=71.8
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
+++|-++. + ++||+||+..|+ . ..|.||++.++..+ . ..+++..++.
T Consensus 6 ~~~i~~~~-~-~vLL~~r~~~~~--~---------~~w~lPgG~ve~gE--t------------------~~eaa~RE~~ 52 (125)
T cd04679 6 GAAILRDD-G-KLLLVKRLRAPE--A---------GHWGIPGGKVDWME--A------------------VEDAVVREIE 52 (125)
T ss_pred EEEEECCC-C-EEEEEEecCCCC--C---------CeEeCCeeeccCCC--C------------------HHHHHHHHHH
Confidence 34555543 4 899999986443 2 38999999997643 3 1377999999
Q ss_pred HHcCCeeccCcceee-cccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHHHH
Q 009940 87 EQLGFGVRDGGEWKL-WKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~-~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~l~ 149 (522)
++.|+.+....+.-. .++.+ ..+.++-+.+|++....+ +..|..+..|+++.+..+.|.
T Consensus 53 EEtGl~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 53 EETGLSIHSTRLLCVVDHIIE----EPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred HHHCCCcccceEEEEEeeccc----CCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 999998765544332 23322 234456667788877655 446888999999987766544
No 55
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.47 E-value=0.00041 Score=63.02 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=71.9
Q ss_pred eehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHH
Q 009940 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
.+++|+.|+. + +.||.||+..++.... .|++|++.++.. |. ...++..+
T Consensus 3 ~v~viv~~~~-~-~vLl~rr~~~~~~~~g---------~w~~PgG~v~~~--E~------------------~~~aa~RE 51 (143)
T cd04694 3 GVAVLLQSSD-Q-KLLLTRRASSLRIFPN---------VWVPPGGHVELG--EN------------------LLEAGLRE 51 (143)
T ss_pred EEEEEEEcCC-C-EEEEEEECCCCCCCCC---------eEECcccccCCC--CC------------------HHHHHHHH
Confidence 4677878764 4 8999999976655445 999999998753 33 12678999
Q ss_pred HHHHcCCeeccC-----cceeecccccCC-CCCCC--CceeEEEEEeEcCC---------CCCCcccccccccHHHHHHH
Q 009940 85 ILEQLGFGVRDG-----GEWKLWKCVEEP-EFGPG--LTIHTVYIMGKLLD---------GNQILQEGCKWMSTQSCINC 147 (522)
Q Consensus 85 ~l~~~gl~l~~~-----~l~~~~~w~~~~-~~~~~--~r~dT~ff~a~~p~---------~~~~e~~~~~W~~~~~al~~ 147 (522)
+.++.|+.+... .+..+.++.+.. ..+.. ....+.||+...+. -+..|....+|+++.+|+++
T Consensus 52 ~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 52 LNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred HHHHHCCCccccccceeEEeeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 999999987754 222222222221 00111 22333333322211 13478999999999999998
Q ss_pred HH
Q 009940 148 LA 149 (522)
Q Consensus 148 l~ 149 (522)
+.
T Consensus 132 ~~ 133 (143)
T cd04694 132 VS 133 (143)
T ss_pred HH
Confidence 65
No 56
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=97.47 E-value=0.00028 Score=65.24 Aligned_cols=108 Identities=16% Similarity=0.301 Sum_probs=72.2
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
++++|.+.. + ++||+||+.+|. . +.|.||+++++..+.-. .++..++
T Consensus 20 v~~vI~~~~-g-~VLL~kR~~~~~--~---------g~W~lPGG~VE~GEt~~--------------------~Aa~REl 66 (159)
T PRK15434 20 LDFIVENSR-G-EFLLGKRTNRPA--Q---------GYWFVPGGRVQKDETLE--------------------AAFERLT 66 (159)
T ss_pred EEEEEECCC-C-EEEEEEccCCCC--C---------CcEECCceecCCCCCHH--------------------HHHHHHH
Confidence 456677653 4 999999975441 2 39999999997643333 6799999
Q ss_pred HHHcCCeecc--Ccce-eecccccCCCC-CC--CCceeEEEEEeEcCCC----CCCcccccccccHHHHHHH
Q 009940 86 LEQLGFGVRD--GGEW-KLWKCVEEPEF-GP--GLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINC 147 (522)
Q Consensus 86 l~~~gl~l~~--~~l~-~~~~w~~~~~~-~~--~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~~ 147 (522)
.++.|+.+.. ..+. -+.+... ..| +. ...|-+.+|.+....+ ...|..+.+|+++.++++.
T Consensus 67 ~EEtGl~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 67 MAELGLRLPITAGQFYGVWQHFYD-DNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred HHHHCCccccccceEEEEEEeecc-cccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhc
Confidence 9999998643 2222 2222222 111 11 2346677888887776 3458899999999998763
No 57
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.46 E-value=0.00027 Score=61.54 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=63.8
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
++||+||...+ .... .|+||++.++.. |. ..+++..++.++.|+.+....
T Consensus 12 ~vLL~~r~~~~-~~~~---------~w~lPgG~ve~g--E~------------------~~~aa~REl~EEtGl~v~~~~ 61 (120)
T cd04683 12 EVLLQRRANTG-YMDG---------QWALPAGHLEKG--ED------------------AVTAAVREAREEIGVTLDPED 61 (120)
T ss_pred EEEEEEccCCC-CCCC---------eEeCCccccCCC--CC------------------HHHHHHHHHHHHHCCccChhh
Confidence 89999997643 2344 999999998753 33 125788999999999887544
Q ss_pred ceeecccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHHHH
Q 009940 98 EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (522)
Q Consensus 98 l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~l~ 149 (522)
+.....+.... +.....=..||++....+ +.+|....+|+++.+.-+.+.
T Consensus 62 ~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 62 LRLAHTMHRRT--EDIESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred eEEEEEEEecC--CCCceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhc
Confidence 33222222112 111223345666654333 446788999999987766543
No 58
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=97.45 E-value=0.00027 Score=63.11 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=70.1
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
++||+||+..+ ... .|.+|++.++..+.- ..++..++.++.|+.+....
T Consensus 13 ~vLL~~r~~~~--~~~---------~w~~PgG~ve~gEs~--------------------~~aa~RE~~EEtGl~~~~~~ 61 (137)
T cd03427 13 KVLLLNRKKGP--GWG---------GWNGPGGKVEPGETP--------------------EECAIRELKEETGLTIDNLK 61 (137)
T ss_pred EEEEEEecCCC--CCC---------eEeCCceeCCCCCCH--------------------HHHHHHHHHHhhCeEeecce
Confidence 89999998766 333 899999999754322 26789999999999988766
Q ss_pred ceeecccccCCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHHHH
Q 009940 98 EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 98 l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~ 146 (522)
+.....|..+. ...+..+.+|++....+ +.+|....+|++..++.+
T Consensus 62 ~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~e~~~~~W~~~~el~~ 110 (137)
T cd03427 62 LVGIIKFPFPG---EEERYGVFVFLATEFEGEPLKESEEGILDWFDIDDLPL 110 (137)
T ss_pred EEEEEEEEcCC---CCcEEEEEEEEECCcccccCCCCccccceEEcHhhccc
Confidence 55444444332 24677888899887777 356778899999887654
No 59
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.43 E-value=0.00045 Score=60.79 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=68.2
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.+++|.|+. + ++||+|+.+ | ...|.||++.++..+ + ...++.+++
T Consensus 5 v~~~i~~~~-~-~iLL~r~~~--------~-----~~~w~lPGG~ve~gE--s------------------~~~aa~REl 49 (125)
T cd04696 5 VGALIYAPD-G-RILLVRTTK--------W-----RGLWGVPGGKVEWGE--T------------------LEEALKREF 49 (125)
T ss_pred EEEEEECCC-C-CEEEEEccC--------C-----CCcEeCCceeccCCC--C------------------HHHHHHHHH
Confidence 356677754 4 899998752 1 238999999997743 3 136789999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHHHH
Q 009940 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~ 146 (522)
.++.|+.+....+.....++..+.+..+..+=+..|.+....+ .+.|...++|+++.+..+
T Consensus 50 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04696 50 REETGLKLRDIKFAMVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTPNEEIVEWEWVTPEEALD 113 (125)
T ss_pred HHHhCCcccccceEEEEEEeccCCCCCccEEEEEEEEEEecCCcccCCcccceeEEECHHHHhc
Confidence 9999998876554433333332322322233233355665543 456889999999987765
No 60
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=97.43 E-value=0.00035 Score=61.24 Aligned_cols=99 Identities=21% Similarity=0.346 Sum_probs=67.2
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccC
Q 009940 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (522)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (522)
.++||+|++.+| ... .|.||++.++. ||. ...++..++.++.|+.+...
T Consensus 11 ~~vLl~~~~~~~--~~~---------~w~lPgG~ve~--gE~------------------~~~aa~RE~~EEtGl~~~~~ 59 (128)
T cd04684 11 GKLLLIQKNGGP--YEG---------RWDLPGGGIEP--GES------------------PEEALHREVLEETGLTVEIG 59 (128)
T ss_pred CEEEEEEccCCC--CCC---------eEECCCcccCC--CCC------------------HHHHHHHHHHHHhCcEeecc
Confidence 399999999876 334 89999999986 333 13779999999999987664
Q ss_pred cceeecccccCCCCCC-CCceeEEEEEeEcCCCC------CCcccccccccHHHHHH
Q 009940 97 GEWKLWKCVEEPEFGP-GLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCIN 146 (522)
Q Consensus 97 ~l~~~~~w~~~~~~~~-~~r~dT~ff~a~~p~~~------~~e~~~~~W~~~~~al~ 146 (522)
.......+..+..... ....-+.+|.+....+. ..|..+..|+++.++.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 116 (128)
T cd04684 60 RRLGSASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIE 116 (128)
T ss_pred eeeeEEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhc
Confidence 4333333333220010 11344567788877663 45778899999988764
No 61
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.43 E-value=0.00049 Score=60.71 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=74.0
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCC-ccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
+++-|+. + ++||.||++....... .|++| ++.++. +|. . +++..++.
T Consensus 5 v~~~~~~-g-~vLl~~R~~~~~~~pg---------~w~~p~GG~ve~--gE~-----------------~--~aa~REl~ 52 (127)
T cd04693 5 VCIFNSK-G-ELLLQKRSPNKDGWPG---------MWDLSVGGHVQA--GET-----------------S--TAAEREVK 52 (127)
T ss_pred EEEEeCC-C-eEEEEEccCCCCCCCC---------cccccCCCcCCC--CCC-----------------H--HHHHHHHH
Confidence 3444443 4 8999888865444445 89998 788774 444 2 77999999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHHHHHhcC
Q 009940 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLAEVK 152 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~~l~~~~ 152 (522)
++.|+.+....+..+.++.-+. +..-+..+|......+ +.+|..++.|+++.++.+++.+-+
T Consensus 53 EEtGl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04693 53 EELGLELDFSELRPLFRYFFEA----EGFDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHGE 118 (127)
T ss_pred HHhCCCcChhhcEEEEEEEeec----CCeEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcCC
Confidence 9999998876665555554333 1122344555554443 557889999999999999886554
No 62
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=97.40 E-value=0.0016 Score=71.04 Aligned_cols=127 Identities=14% Similarity=0.152 Sum_probs=82.0
Q ss_pred CcceEEEecCCeEEEcCCCCChHHH-HHHHHHHhCCCccEEEEcCCCccccCCHHHHHHh-CCCCEEEEcHhHHHH----
Q 009940 221 CGNHRFVAQGEALIVDPGCRSEFHE-ELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMRR---- 294 (522)
Q Consensus 221 ~~~~~~l~~g~~iLIDtG~~~~~~~-~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~-~p~a~V~a~~~~~~~---- 294 (522)
+.|+..-+++-.+|||||++..... .+..+-..+..+++|++||...=|+||+.+.... +=+|+||++-.....
T Consensus 15 ~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~ 94 (764)
T KOG1135|consen 15 PLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMF 94 (764)
T ss_pred cceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhh
Confidence 3344444567799999999876533 3333444456788999999999999999987543 346899998655321
Q ss_pred ----hcc-CC---C---C--------CCceecCCCceEEECCE----EEEEEeCCCCCCCCeEEEe--CCCCEEEEccc
Q 009940 295 ----IGK-DD---W---S--------LGYTSVSGSEDICVGGQ----RLTVVFSPGHTDGHVALLH--ASTNSLIVGDH 348 (522)
Q Consensus 295 ----l~~-~~---~---~--------~~~~~l~~g~~l~lgg~----~l~vi~tPGHT~g~i~l~~--~~~~vLftGD~ 348 (522)
+.. .+ + . ....+++-.+.+.+.|. ++...+ .||++|...+-+ ..++++|+=|.
T Consensus 95 myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itayn-AGhmiGGsIWkI~k~~E~ivYavd~ 172 (764)
T KOG1135|consen 95 MYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYN-AGHMIGGSIWKISKVGEDIVYAVDF 172 (764)
T ss_pred HHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeec-CCCccCceEEEEEecCceEEEEEec
Confidence 111 11 0 0 11245666677777543 444443 599999876554 34679998885
No 63
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=97.36 E-value=0.00052 Score=61.31 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=70.2
Q ss_pred CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeec
Q 009940 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (522)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (522)
++.++||+|++.+. ...|.||+++++. ||. .++++..++.++.|+.+.
T Consensus 11 ~~~~~Llvk~~~~~------------~g~W~fPgG~ve~--gEt------------------~~eaa~REl~EEtGl~v~ 58 (132)
T cd04661 11 DDTLVLLVQQKVGS------------QNHWILPQGKREE--GET------------------LRQTAERTLKELCGNNLK 58 (132)
T ss_pred cCcEEEEEEeecCC------------CCeeECCcccccC--CCC------------------HHHHHHHHHHHhhCCCce
Confidence 45699999987531 2399999999975 444 247899999999999766
Q ss_pred cCcc--eeecc--cccCCC--CCCCCceeEEEEEeEcCCC---CCCcccccccccHHHHHHHHH
Q 009940 95 DGGE--WKLWK--CVEEPE--FGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLA 149 (522)
Q Consensus 95 ~~~l--~~~~~--w~~~~~--~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~~l~ 149 (522)
...+ .+..+ |..|.. ........+.||.+..-+| ...|..+..|+++.++.+.+.
T Consensus 59 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 59 AKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSGQFELSQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred EEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecCccccCCCcceeEecCHHHHHhhcC
Confidence 5321 12222 322210 0112235678899998887 346889999999999887653
No 64
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.36 E-value=0.00051 Score=61.09 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=65.2
Q ss_pred CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeec
Q 009940 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (522)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (522)
++.++||+||+.. ... .|.+|++.++..+.- .+++..++.++.|++..
T Consensus 12 ~~~~vLl~~r~~~---~~g---------~w~~PgG~ve~gEs~--------------------~~aa~RE~~EEtGl~~~ 59 (131)
T cd04695 12 KETKVLLLKRVKT---LGG---------FWCHVAGGVEAGETA--------------------WQAALRELKEETGISLP 59 (131)
T ss_pred CCCEEEEEEecCC---CCC---------cEECCcccccCCCCH--------------------HHHHHHHHHHHhCCCcc
Confidence 3558999999865 123 799999998754422 37899999999999875
Q ss_pred cCccee-ecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHHHH
Q 009940 95 DGGEWK-LWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCL 148 (522)
Q Consensus 95 ~~~l~~-~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~~l 148 (522)
.-.... +-+..+.. ..+.+...+|++....+ .+.|....+|++..++++++
T Consensus 60 ~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 115 (131)
T cd04695 60 ELYNADYLEQFYEAN---DNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELA 115 (131)
T ss_pred ccccccceeeEeecC---CceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhc
Confidence 322111 11222222 12234445677776544 34689999999999998863
No 65
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=97.30 E-value=0.0005 Score=62.55 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=67.4
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
+++|-|..++ .+||+||..++ .|.||++.++..+.- ..++..|+.
T Consensus 5 gaii~~~~~~-~vLLvr~~~~~--------------~W~lPGG~ve~gEs~--------------------~~AA~REl~ 49 (145)
T cd03672 5 GAIILNEDLD-KVLLVKGWKSK--------------SWSFPKGKINKDEDD--------------------HDCAIREVY 49 (145)
T ss_pred EEEEEeCCCC-EEEEEEecCCC--------------CEECCCccCCCCcCH--------------------HHHHHHHHH
Confidence 4556665434 89999986431 699999999754322 377999999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC------CCCcccccccccHHHHHHHHHhc
Q 009940 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAEV 151 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~------~~~e~~~~~W~~~~~al~~l~~~ 151 (522)
++.|+.+..-. ....++... .....-+.||+...+.. +..|..++.|+++.+..+++.+.
T Consensus 50 EETGl~v~~~~--~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 115 (145)
T cd03672 50 EETGFDISKYI--DKDDYIELI---IRGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK 115 (145)
T ss_pred HhhCccceecc--ccceeeecc---cCCcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc
Confidence 99999865421 112222221 12223345555444332 34688999999999999887664
No 66
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=97.28 E-value=0.00084 Score=59.67 Aligned_cols=108 Identities=20% Similarity=0.300 Sum_probs=74.8
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.++||.+ ++ .+||+||+.+ +.. .|.+|++.++.. |. ..+++..++
T Consensus 3 v~~ii~~--~~-~vLlv~r~~~---~~~---------~w~~PgG~ve~g--Es------------------~~~aa~REl 47 (134)
T cd03675 3 VAAVVER--DG-RFLLVEEETD---GGL---------VFNQPAGHLEPG--ES------------------LIEAAVRET 47 (134)
T ss_pred EEEEEEE--CC-EEEEEEEccC---CCc---------eEECCCccCCCC--CC------------------HHHHHHHHH
Confidence 3445543 23 8999999776 223 899999999863 33 127899999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHHHHhc
Q 009940 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAEV 151 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~l~~~ 151 (522)
.++.|+.+....+.....+..+. ....+...+|++.+..+ ...|..+..|+++.+..++..+.
T Consensus 48 ~EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~ 115 (134)
T cd03675 48 LEETGWHVEPTALLGIYQWTAPD---SDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAARL 115 (134)
T ss_pred HHHHCcccccceEEEEEEeecCC---CCeeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhhh
Confidence 99999998766654444443332 23466777788887765 23577889999999888866533
No 67
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=97.28 E-value=0.0002 Score=71.96 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=37.8
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHh
Q 009940 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHEN 290 (522)
Q Consensus 230 g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~ 290 (522)
.+.++||+|+.... ...+ .....+++||+||.|.||+.|+..|++.+ ..+++....
T Consensus 40 ~~~~lid~g~~~~~--~~~~--~~~~~idai~~TH~H~DHi~Gl~~l~~~~-~~~~~~~~~ 95 (269)
T COG1235 40 VKTLLIDAGPDLRD--QGLR--LGVSDLDAILLTHEHSDHIQGLDDLRRAY-TLPIYVNPG 95 (269)
T ss_pred ceeEEEecChhHHh--hhhc--ccccccCeEEEecccHHhhcChHHHHHHh-cCCcccccc
Confidence 34788999876421 1111 11246789999999999999999998865 455555433
No 68
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=97.28 E-value=0.0008 Score=60.05 Aligned_cols=109 Identities=21% Similarity=0.232 Sum_probs=73.8
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
.+++.|+. + ++||+||.+++. .. ..|++|++.++. +|+ ..+++..++.
T Consensus 6 ~v~~~~~~-~-~iLl~~~~~~~~-~~---------~~w~~PgG~ve~--gEs------------------~~~aa~RE~~ 53 (137)
T cd03424 6 AVLPYDDD-G-KVVLVRQYRPPV-GG---------WLLELPAGLIDP--GED------------------PEEAARRELE 53 (137)
T ss_pred EEEEEcCC-C-eEEEEEeeecCC-CC---------EEEEeCCccCCC--CCC------------------HHHHHHHHHH
Confidence 35566665 4 899999988765 22 389999999988 333 1368999999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC------CCCcccccccccHHHHHHHHHhcC
Q 009940 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAEVK 152 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~------~~~e~~~~~W~~~~~al~~l~~~~ 152 (522)
++.|+.+. .+.......... +.. ..-+.+|++..... +..|....+|+++.+..+++.+-.
T Consensus 54 EE~Gl~~~--~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 54 EETGYEAG--DLEKLGSFYPSP--GFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred HHHCCCcc--ceEEEeeEecCC--ccc-CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 99999875 222222222222 212 22345666766654 457889999999999998877644
No 69
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=97.22 E-value=0.001 Score=60.44 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=66.6
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.+++|-|+. + ++||+||+..| +.|++|+|.++. ||+ ..+++..|+
T Consensus 10 v~~vi~~~~-~-~vLl~~r~~~~-------------~~W~lPgG~ve~--gEs------------------~~~aa~REl 54 (148)
T PRK09438 10 VLVVIYTPD-L-GVLMLQRADDP-------------DFWQSVTGSLEE--GET------------------PAQTAIREV 54 (148)
T ss_pred EEEEEEeCC-C-eEEEEEecCCC-------------CcEeCCcccCCC--CCC------------------HHHHHHHHH
Confidence 344555543 4 79999886432 389999999875 444 237899999
Q ss_pred HHHcCCeeccCcceeeccc------------cc--CCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHHHHHH
Q 009940 86 LEQLGFGVRDGGEWKLWKC------------VE--EPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCL 148 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w------------~~--~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~~l 148 (522)
.++.|+......+. +..| .. ++ +.. ..-..+|.+..+.+ +.+|..+..|+++.++.+++
T Consensus 55 ~EEtGl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 130 (148)
T PRK09438 55 KEETGIDVLAEQLT-LIDCQRSIEYEIFPHWRHRYAP--GVT-RNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALT 130 (148)
T ss_pred HHHhCcCcccccee-ecccccccccccchhhhhcccc--ccC-CceeEEEEEecCCCCccccCcccceeeCCHHHHHHHh
Confidence 99999987333221 1111 11 12 211 22235566666554 44699999999999998864
No 70
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.16 E-value=0.0012 Score=58.27 Aligned_cols=105 Identities=22% Similarity=0.310 Sum_probs=72.9
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.+++|.|+. + ++||.|++.+| .+..|++|++.++..+ . ..+++..++
T Consensus 5 v~~ii~~~~-~-~iLl~~r~~~~-----------~~~~w~~PGG~ve~gE--t------------------~~~Aa~REl 51 (129)
T cd04678 5 VGVFVLNPK-G-KVLLGKRKGSH-----------GAGTWALPGGHLEFGE--S------------------FEECAAREV 51 (129)
T ss_pred EEEEEECCC-C-eEEEEeccCCC-----------CCCeEECCcccccCCC--C------------------HHHHHHHHH
Confidence 456777775 4 89999998653 2448999998885432 2 237788999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCCC-------CCcccccccccHHHHHH
Q 009940 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMSTQSCIN 146 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~~-------~~e~~~~~W~~~~~al~ 146 (522)
.++.|+.+.......+..... + .....+-+.||.+....+. .+|....+|+++.+..+
T Consensus 52 ~EE~Gl~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 116 (129)
T cd04678 52 LEETGLHIENVQFLTVTNDVF-E--EEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPS 116 (129)
T ss_pred HHHhCCcccceEEEEEEeEEe-C--CCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCC
Confidence 999999876644433322222 2 3456788999999988761 24566789999988765
No 71
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.13 E-value=0.0012 Score=58.30 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=68.5
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.++||.+ ++ ++||+||+.+. ...|.+|++.++.. |. ..+++..++
T Consensus 4 a~~iv~~--~~-~vLl~~r~~~~------------~~~~~lPGG~ve~g--Et------------------~~~aa~RE~ 48 (128)
T cd04687 4 AKAVIIK--ND-KILLIKHHDDG------------GVWYILPGGGQEPG--ET------------------LEDAAHREC 48 (128)
T ss_pred EEEEEEE--CC-EEEEEEEEcCC------------CCeEECCCcccCCC--CC------------------HHHHHHHHH
Confidence 3455553 34 99999996542 12799999998763 33 237899999
Q ss_pred HHHcCCeeccCcceeecccccCC-CCCCCCce--eEEEEEeEcCCC--------CCCcccccccccHHHHHH
Q 009940 86 LEQLGFGVRDGGEWKLWKCVEEP-EFGPGLTI--HTVYIMGKLLDG--------NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w~~~~-~~~~~~r~--dT~ff~a~~p~~--------~~~e~~~~~W~~~~~al~ 146 (522)
.++.|+.+....+.....++... .......+ -+.||++..+.+ ++.|....+|+++.+..+
T Consensus 49 ~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~ 120 (128)
T cd04687 49 KEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGD 120 (128)
T ss_pred HHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCc
Confidence 99999999876655444444221 00112233 346788888765 234456899999887643
No 72
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.13 E-value=0.001 Score=57.68 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=68.9
Q ss_pred CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeec
Q 009940 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (522)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (522)
++ ++||+||.. . ..|.||++.++.. |+ ..+++..++.++.|+...
T Consensus 11 ~~-~vLl~~r~~-----~---------~~w~~PgG~ve~~--Es------------------~~~aa~REl~EEtGl~~~ 55 (118)
T cd04690 11 DG-RVLLVRKRG-----T---------DVFYLPGGKIEAG--ET------------------PLQALIRELSEELGLDLD 55 (118)
T ss_pred CC-eEEEEEECC-----C---------CcEECCCCccCCC--CC------------------HHHHHHHHHHHHHCCccC
Confidence 35 999999852 1 3799999988763 33 136789999999999877
Q ss_pred cCcceeecccccCCCCCCCCceeEEEEEeEcCCC--CCCcccccccccHHHHHH
Q 009940 95 DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 95 ~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~--~~~e~~~~~W~~~~~al~ 146 (522)
...+..+..+..+....+.....+.+|++..... ...|....+|+++.++.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 56 PDSLEYLGTFRAPAANEPGVDVRATVYVAELTGEPVPAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred hhheEEEEEEecccccCCCcEEEEEEEEEcccCCcCCCchhhccEEecHHHccc
Confidence 6545555555444322333567888999887655 456889999999988743
No 73
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=97.12 E-value=0.0016 Score=60.53 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=70.3
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCC-ccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
+++|.|+. + ++||.||+.....- ...|++| ++.++.. |. ..+++..|+
T Consensus 34 ~v~i~~~~-~-~iLl~kR~~~~~~~---------Pg~w~~~~gG~ie~G--Et------------------~~eaa~REl 82 (165)
T cd02885 34 SVFLFNSK-G-RLLLQRRALSKYTF---------PGLWTNTCCSHPLPG--EG------------------VKDAAQRRL 82 (165)
T ss_pred EEEEEcCC-C-cEEEEeccCCCccC---------CCcccccccCCCCCC--CC------------------HHHHHHHHH
Confidence 46678765 4 89999987543222 3399997 6766542 32 237899999
Q ss_pred HHHcCCeeccCcce-eecccccCCCCCCC--CceeEEEEEeEcCCC---CCCcccccccccHHHHHHHHHhc
Q 009940 86 LEQLGFGVRDGGEW-KLWKCVEEPEFGPG--LTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEV 151 (522)
Q Consensus 86 l~~~gl~l~~~~l~-~~~~w~~~~~~~~~--~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~~l~~~ 151 (522)
.++.|+.+....+. .--++..+.. ... ..+. .+|.+....+ +..|....+|+++.++.+++..-
T Consensus 83 ~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~i~-~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 83 REELGITGDLLELVLPRFRYRAPDD-GGLVEHEID-HVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred HHHhCCCccchhhccceEEEEEEcC-CCceeeEEE-EEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHhC
Confidence 99999997755443 1112222110 111 1133 4555665444 55788899999999999987653
No 74
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.11 E-value=0.0014 Score=57.29 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=66.1
Q ss_pred eeEEeecCCCCC-CCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccC
Q 009940 18 EFLLVKQTPPPK-FNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (522)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (522)
++||+||...|+ .... .|+||++.++.. |. ...++..++.++.|+.+...
T Consensus 13 ~vLl~~r~~~~~~~~~g---------~w~~PgG~ve~g--E~------------------~~~aa~RE~~EE~Gl~~~~~ 63 (122)
T cd04682 13 RLLLQLRDDKPGIPYPG---------HWDLPGGHREGG--ET------------------PLECVLRELLEEIGLTLPES 63 (122)
T ss_pred EEEEEEccCCCCCCCCC---------cEeCCCccccCC--CC------------------HHHHHHHHHHHHhCCccccc
Confidence 899999998875 3334 999999999863 33 13678899999999987643
Q ss_pred cceeecccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHH
Q 009940 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (522)
Q Consensus 97 ~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~ 147 (522)
.+. +.+-.... ...-...+|++...+. +..|..+..|+++.+..+.
T Consensus 64 ~~~-~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 64 RIP-WFRVYPSA----SPPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred ccc-eeEecccC----CCCceEEEEEEEEecCCCccccCchhheeecccHHHHhhc
Confidence 331 22211111 2233456777777654 5678899999999887663
No 75
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.08 E-value=0.0013 Score=57.03 Aligned_cols=99 Identities=20% Similarity=0.362 Sum_probs=65.5
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
++||+||+..+ . +..|.+|++.++..+ + ..+++..++.++.|+.+....
T Consensus 12 ~vLl~~r~~~~--~---------~~~w~~PgG~ie~gE--~------------------~~~aa~RE~~EEtGl~~~~~~ 60 (122)
T cd04673 12 RVLLVRRANPP--D---------AGLWSFPGGKVELGE--T------------------LEQAALRELLEETGLEAEVGR 60 (122)
T ss_pred EEEEEEEcCCC--C---------CCeEECCCcccCCCC--C------------------HHHHHHHHHHHhhCcEeeece
Confidence 89999997643 1 337999999997533 3 237899999999999987655
Q ss_pred ceeecccccCCCCC-CCCceeEEEEEeEcCCC---CCCcccccccccHHHHHHH
Q 009940 98 EWKLWKCVEEPEFG-PGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINC 147 (522)
Q Consensus 98 l~~~~~w~~~~~~~-~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~~ 147 (522)
......+..+.-.+ ....+-...|.+....+ +..|....+|+++.++.++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 61 LLTVVDVIERDAAGRVEFHYVLIDFLCRYLGGEPVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred eEEEEEEeeccCCCccceEEEEEEEEEEeCCCcccCCcccceeEEECHHHHhhC
Confidence 55444444322001 12223333456666555 4467888999999988763
No 76
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.08 E-value=0.0022 Score=56.60 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=70.1
Q ss_pred hhcCCCCCceeEEeecCCCCCCCccccccccccccCCC-CccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
+|.|.. + ++||.||++.++.... .|++ |++.++. +|. ...++..++.+
T Consensus 6 ~i~~~~-~-~iLl~~R~~~~~~~~g---------~w~~~~GG~ve~--gE~------------------~~~aa~REl~E 54 (126)
T cd04697 6 FVFNSE-G-KLCVHKRTLTKDWCPG---------YWDIAFGGVVQA--GES------------------YLQNAQRELEE 54 (126)
T ss_pred EEEcCC-C-eEEEEECCCCCCCCCC---------cccCcCCcccCC--CCC------------------HHHHHHHHHHH
Confidence 344443 5 8999998887766666 9999 5788864 333 13789999999
Q ss_pred HcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHHHHHHH
Q 009940 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLA 149 (522)
Q Consensus 88 ~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~~l~ 149 (522)
+.|+... .+..+.....+. ... ++.-.+|.+..... +..|..+.+|+++.++.+++.
T Consensus 55 EtGl~~~--~l~~~~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 55 ELGIDGV--QLTPLGLFYYDT--DGN-RVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred HHCCCcc--ccEEeeEEEecC--CCc-eEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhh
Confidence 9999765 445554444333 222 33334555655333 456888999999999998754
No 77
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.07 E-value=0.0014 Score=57.59 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=68.8
Q ss_pred ceehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHH
Q 009940 4 YNVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (522)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (522)
+|..++|.+ ++ ++||.|++. ...|.||++.++. ||. ..+++..
T Consensus 2 ~~v~~vi~~--~~-~vLl~~~~~--------------~~~w~lPgG~ve~--gEs------------------~~~aa~R 44 (126)
T cd04688 2 VRAAAIIIH--NG-KLLVQKNPD--------------ETFYRPPGGGIEF--GES------------------SEEALIR 44 (126)
T ss_pred eEEEEEEEE--CC-EEEEEEeCC--------------CCeEECCCccccC--CCC------------------HHHHHHH
Confidence 455555442 23 899998764 2389999999986 333 1377999
Q ss_pred HHHHHcCCeeccCcce-eecccccCCCCCCCCceeEEEEEeEcCCCC-----------CCcccccccccHHHHH
Q 009940 84 QILEQLGFGVRDGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----------QILQEGCKWMSTQSCI 145 (522)
Q Consensus 84 ~~l~~~gl~l~~~~l~-~~~~w~~~~~~~~~~r~dT~ff~a~~p~~~-----------~~e~~~~~W~~~~~al 145 (522)
++.++.|+......+. .+.+..+.. +..+..-+.||.+.++.+. ..|.....|+++.+..
T Consensus 45 E~~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 116 (126)
T cd04688 45 EFKEELGLKIEITRLLGVVENIFTYN--GKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELK 116 (126)
T ss_pred HHHHHhCCceecceeeEEEEEeeccC--CcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcc
Confidence 9999999987655442 233323333 3334455778899988772 2578899999988665
No 78
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=97.05 E-value=0.0014 Score=59.59 Aligned_cols=107 Identities=12% Similarity=0.205 Sum_probs=68.6
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
++|-|.. + ++||+||+..+ . .|++|++.++..+ . ..+++..++-+
T Consensus 8 ~ii~~~~-~-~vLL~~r~~~~----~---------~W~~PgG~~e~gE--~------------------~~~aA~REv~E 52 (147)
T cd03671 8 VVLFNED-G-KVFVGRRIDTP----G---------AWQFPQGGIDEGE--D------------------PEQAALRELEE 52 (147)
T ss_pred EEEEeCC-C-EEEEEEEcCCC----C---------CEECCcCCCCCCc--C------------------HHHHHHHHHHH
Confidence 3444433 4 99999999877 4 8999999986533 2 23789999999
Q ss_pred HcCCeeccCcc-eeeccccc---CCCCCCCCce-------eEEEEEeEcCC--C----C---CCcccccccccHHHHHHH
Q 009940 88 QLGFGVRDGGE-WKLWKCVE---EPEFGPGLTI-------HTVYIMGKLLD--G----N---QILQEGCKWMSTQSCINC 147 (522)
Q Consensus 88 ~~gl~l~~~~l-~~~~~w~~---~~~~~~~~r~-------dT~ff~a~~p~--~----~---~~e~~~~~W~~~~~al~~ 147 (522)
+.|+.+....+ ..+.-|++ +.+ ...+.+ ...+|++.+.. + + +.|..+.+|+++.++.++
T Consensus 53 EtGl~~~~~~~l~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~ 131 (147)
T cd03671 53 ETGLDPDSVEIIAEIPDWLRYDLPPE-LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL 131 (147)
T ss_pred HHCCCcCceEEEEEcCCeeEeeChhh-hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence 99998754333 22222222 221 111222 23455666654 2 1 468999999999999987
Q ss_pred HHh
Q 009940 148 LAE 150 (522)
Q Consensus 148 l~~ 150 (522)
+..
T Consensus 132 ~~~ 134 (147)
T cd03671 132 IVP 134 (147)
T ss_pred chh
Confidence 543
No 79
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=97.03 E-value=0.0014 Score=59.05 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=60.4
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
++||.|++.+.+.... .|++|++.+++. |+ -.+++..++.++.|+.+....
T Consensus 16 ~vLl~~R~~~~~~~~g---------~W~lPgG~ve~g--Es------------------~~~aa~REl~EEtGl~~~~~~ 66 (141)
T PRK15472 16 AYLLCKMADDRGVFPG---------QWALSGGGVEPG--ER------------------IEEALRREIREELGEQLLLTE 66 (141)
T ss_pred EEEEEEecccCCCCCC---------ceeCCcccCCCC--CC------------------HHHHHHHHHHHHHCCceeeee
Confidence 9999998776655555 999999998654 33 126788999999999876555
Q ss_pred ceeeccc------ccCCCCCCC-CceeEEE-EEeEcCCC---CCCcccccccccHHHHHH
Q 009940 98 EWKLWKC------VEEPEFGPG-LTIHTVY-IMGKLLDG---NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 98 l~~~~~w------~~~~~~~~~-~r~dT~f-f~a~~p~~---~~~e~~~~~W~~~~~al~ 146 (522)
+.++.-. .-+. +.. ..|...+ |......+ .+.|..+.+|+++++.-+
T Consensus 67 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 124 (141)
T PRK15472 67 ITPWTFRDDIRTKTYAD--GRKEEIYMIYLIFDCVSANRDVKINEEFQDYAWVKPEDLVH 124 (141)
T ss_pred eccccccccceeEEecC--CCceeEEEEEEEEEeecCCCcccCChhhheEEEccHHHhcc
Confidence 4433111 0011 111 1223322 22222222 446888999999887654
No 80
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=97.01 E-value=0.002 Score=57.20 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=65.4
Q ss_pred eehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHH
Q 009940 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
-.++||. .+| ++||.||++.. ...+ +|.||+++++.. |. ..++...+
T Consensus 6 ~~~~ii~--~~~-~vLL~~R~~~~-~~~g---------~w~~PgG~ve~g--E~------------------~~~a~~RE 52 (135)
T PRK10546 6 VVAAIIE--RDG-KILLAQRPAHS-DQAG---------LWEFAGGKVEPG--ES------------------QPQALIRE 52 (135)
T ss_pred EEEEEEe--cCC-EEEEEEccCCC-CCCC---------cEECCcccCCCC--CC------------------HHHHHHHH
Confidence 3455554 234 89999885432 2344 999999988653 33 11457899
Q ss_pred HHHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC--CCCcccccccccHHHHHH
Q 009940 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 85 ~l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~--~~~e~~~~~W~~~~~al~ 146 (522)
+.++.|+.+....+..-.++... .+.++..+|.+..-.+ ...|....+|+++.++.+
T Consensus 53 ~~EE~Gl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 111 (135)
T PRK10546 53 LREELGIEATVGEYVASHQREVS-----GRRIHLHAWHVPDFHGELQAHEHQALVWCTPEEALR 111 (135)
T ss_pred HHHHHCCccccceeEEEEEEecC-----CcEEEEEEEEEEEecCcccccccceeEEcCHHHccc
Confidence 99999999766543322233221 2466666776655444 234677889999887765
No 81
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=97.00 E-value=0.0011 Score=62.88 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=74.9
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
+++-++. +.++||+||-++|-..... +.-.|.||++.++. +|. -.+++..|+.+
T Consensus 49 vl~~~~~-~~~vlLvrq~R~~~~~~~~-----~~~~lelPaG~ve~--gE~------------------~~~aA~REl~E 102 (185)
T TIGR00052 49 VLLYDPK-KDTVVLIEQFRIAAYVNGE-----EPWLLELSAGMVEK--GES------------------PEDVARREAIE 102 (185)
T ss_pred EEEEECC-CCEEEEEECceeeeeecCC-----cceEEEECcEecCC--CCC------------------HHHHHHHHccc
Confidence 3333443 4499999999998653210 12389999999984 333 13679999999
Q ss_pred HcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC--------CCCcccccccccHHHHHHHHHhc
Q 009940 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--------NQILQEGCKWMSTQSCINCLAEV 151 (522)
Q Consensus 88 ~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~--------~~~e~~~~~W~~~~~al~~l~~~ 151 (522)
+.|+... .+.....+.+.+ +.. .--+.+|+|....+ ++.|.....|++..++++++.+=
T Consensus 103 EtG~~~~--~~~~~~~~~~~~--g~~-~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 103 EAGYQVK--NLRKLLSFYSSP--GGV-TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred cccceec--ceEEEEEEEcCC--CCC-cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 9999874 334444444444 322 34456778875432 45667789999999999987643
No 82
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.98 E-value=0.0028 Score=57.32 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=70.3
Q ss_pred hcCCC-CCceeEEeecCCCCCCCccccccccccccCCC-CccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 10 LKNPL-NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 10 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
|.|.. ++..+||.||++.-+.... .|++ |++.++. +|. ...+++.|+.+
T Consensus 9 v~~~~~~~~~vLl~~R~~~~~~~pg---------~W~~~~gG~ve~--gEt------------------~~~aa~REl~E 59 (144)
T cd04692 9 IITKDEGKGYVLLQKRSANKKTYPG---------LWDISSAGHILA--GET------------------PLEDGIRELEE 59 (144)
T ss_pred EEEccCCCCEEEEEecCCCCCCCCC---------ccccccCcccCC--CCC------------------HHHHHHHHHHH
Confidence 44443 2357888787764444444 9999 5888875 333 13789999999
Q ss_pred HcCCeeccCcceeec---cccc-CCCCCCCCceeEEEEEeEcCC--C----CCCcccccccccHHHHHHHHHhcC
Q 009940 88 QLGFGVRDGGEWKLW---KCVE-EPEFGPGLTIHTVYIMGKLLD--G----NQILQEGCKWMSTQSCINCLAEVK 152 (522)
Q Consensus 88 ~~gl~l~~~~l~~~~---~w~~-~~~~~~~~r~dT~ff~a~~p~--~----~~~e~~~~~W~~~~~al~~l~~~~ 152 (522)
+.|+.+..+.+..+. ...+ ... ...+.+ ..+|++.+.. + +..|....+|+++.++.+++.+-.
T Consensus 60 EtGl~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 132 (144)
T cd04692 60 ELGLDVSADDLIPLGTFKIEYDHIGK-LIDREF-HHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEED 132 (144)
T ss_pred HhCCCCChHHeEEeeEEEEeccccCC-CccceE-EEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcCC
Confidence 999987665544332 2222 110 111223 3455565543 2 457899999999999999886544
No 83
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=96.97 E-value=0.0012 Score=60.70 Aligned_cols=111 Identities=12% Similarity=0.175 Sum_probs=69.6
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
+++|-|+. | ++||+||... ...|.+|++.++.. |+ ..+++..++.
T Consensus 12 ~~~i~~~~-g-~vLL~~r~~~-------------~~~w~~P~G~~~~g--E~------------------~~~aa~REl~ 56 (156)
T PRK00714 12 GIILLNRQ-G-QVFWGRRIGQ-------------GHSWQFPQGGIDPG--ET------------------PEQAMYRELY 56 (156)
T ss_pred EEEEEecC-C-EEEEEEEcCC-------------CCeEECCcccCCCC--cC------------------HHHHHHHHHH
Confidence 35566655 4 8999999742 13799999998753 33 2377999999
Q ss_pred HHcCCeecc-CcceeecccccCC---CC-C-CCCce---eEEEEEeEcCCC---------CCCcccccccccHHHHHHHH
Q 009940 87 EQLGFGVRD-GGEWKLWKCVEEP---EF-G-PGLTI---HTVYIMGKLLDG---------NQILQEGCKWMSTQSCINCL 148 (522)
Q Consensus 87 ~~~gl~l~~-~~l~~~~~w~~~~---~~-~-~~~r~---dT~ff~a~~p~~---------~~~e~~~~~W~~~~~al~~l 148 (522)
++.|+.... ..+..+..|++-. .. . ....| ...||+++...+ ++.|..+.+|+++.++.+++
T Consensus 57 EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~ 136 (156)
T PRK00714 57 EEVGLRPEDVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQV 136 (156)
T ss_pred HHhCCCccceEEEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence 999998642 2233333333311 00 0 01112 356777776432 23588999999999999876
Q ss_pred HhcC
Q 009940 149 AEVK 152 (522)
Q Consensus 149 ~~~~ 152 (522)
..++
T Consensus 137 ~~~~ 140 (156)
T PRK00714 137 VPFK 140 (156)
T ss_pred hhhh
Confidence 4443
No 84
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=96.96 E-value=0.00072 Score=71.98 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=77.9
Q ss_pred CCcceEEEecCCeEEEcCCCCChHHHHHHH--HH--HhCCCccEEEEcCCCccccCCHHHHHHh--CCCCEEEEcHhH--
Q 009940 220 DCGNHRFVAQGEALIVDPGCRSEFHEELLK--VV--ASLPRKLIVFVTHHHRDHVDGLSIIQKC--NPDAILLAHENT-- 291 (522)
Q Consensus 220 g~~~~~~l~~g~~iLIDtG~~~~~~~~L~~--~~--~~~~~i~~IiiTH~H~DHiGG~~~l~~~--~p~a~V~a~~~~-- 291 (522)
|.+|.+.-..|+.|+.|||.-+... .+.. .. .++..++.+++||.|.||++.+.++.++ | .-+++++-.+
T Consensus 26 GRSC~ile~kGk~iMld~gvhpays-g~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf-~grvfmth~TkA 103 (668)
T KOG1137|consen 26 GRSCHILEYKGKTIMLDCGVHPAYS-GMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSF-IGRVFMTHPTKA 103 (668)
T ss_pred CceEEEEEecCeEEEeccccCcccc-ccccccchhhcccccccHHHHhhhhhhhcccccceeeeccc-cceeEEecchHH
Confidence 3344444446889999999654321 1111 11 1345567899999999999999998654 3 2344443322
Q ss_pred -HHHhccCC-----CC---------------CCceecCCCceEEECCEEEEEEeCCCCCCCCeEEEeCC--CCEEEEccc
Q 009940 292 -MRRIGKDD-----WS---------------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHAS--TNSLIVGDH 348 (522)
Q Consensus 292 -~~~l~~~~-----~~---------------~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i~l~~~~--~~vLftGD~ 348 (522)
.+.+.... .. ....++.-.+++++.|.++..++ .||--|..+|.++- -++||+||.
T Consensus 104 i~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyTGd~ 182 (668)
T KOG1137|consen 104 IYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYTGDY 182 (668)
T ss_pred HHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeeeceEEEEecccc
Confidence 22221110 00 01123344456777887787777 79999999988753 469999997
Q ss_pred c
Q 009940 349 C 349 (522)
Q Consensus 349 l 349 (522)
.
T Consensus 183 s 183 (668)
T KOG1137|consen 183 S 183 (668)
T ss_pred c
Confidence 5
No 85
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.95 E-value=0.0016 Score=57.51 Aligned_cols=103 Identities=19% Similarity=0.234 Sum_probs=66.3
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.+++|.|+. + ++||+||...|. . +.|.+|++.++..+ + ..+++..++
T Consensus 4 v~~~i~~~~-~-~vLL~~r~~~~~--~---------~~w~~PgG~ve~gE--s------------------~~~aa~RE~ 50 (130)
T cd04681 4 VGVLILNED-G-ELLVVRRAREPG--K---------GTLDLPGGFVDPGE--S------------------AEEALIREI 50 (130)
T ss_pred EEEEEEcCC-C-cEEEEEecCCCC--C---------CcEeCCceeecCCC--C------------------HHHHHHHHH
Confidence 456777765 5 899999976541 2 38999999996543 2 237789999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCceeE--EEEEeEcCCC----CCCcccccccccHHHH
Q 009940 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHT--VYIMGKLLDG----NQILQEGCKWMSTQSC 144 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT--~ff~a~~p~~----~~~e~~~~~W~~~~~a 144 (522)
.++.|+....-....-..+..+- .+.++.+ .||++.++.+ +.+|.....|+++.+.
T Consensus 51 ~EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 112 (130)
T cd04681 51 REETGLKVTELSYLFSLPNTYPY---GGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDI 112 (130)
T ss_pred HHHhCCcccceeEEEeecceeee---CCceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHC
Confidence 99999976533221111111111 1222333 4788888765 5578889999998653
No 86
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.90 E-value=0.0028 Score=55.53 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=67.0
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.+++|.|.. + ++||.||.+.++.... +|.+|++.++.. |+ ...++..++
T Consensus 4 v~~vv~~~~-~-~iLl~kr~~~~~~~~g---------~w~~PgG~ve~g--Es------------------~~~aa~RE~ 52 (129)
T cd04699 4 VAALIVKDV-G-RILILKRSKDERTAPG---------KWELPGGKVEEG--ET------------------FEEALKREV 52 (129)
T ss_pred EEEEEECCC-C-cEEEEEecCCCCCCCC---------cCcCCccCccCC--CC------------------HHHHHHHHH
Confidence 456666533 4 8999999887766556 999999987653 33 125678999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHH
Q 009940 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~a 144 (522)
.++.|+.+....+... .+... +......-..+|.+....+ ...|.....|+++.+.
T Consensus 53 ~EE~Gl~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el 111 (129)
T cd04699 53 YEETGLTVTPFLRYPS--TVTHE-DSGVYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEEL 111 (129)
T ss_pred HHhhCcEEEeeeeeeE--EEEEc-CCCEEEEEEEEEEeeecCCcccCChhheEEEEecHHHh
Confidence 9999998866554311 12222 1111233344556544333 4567888999998886
No 87
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.84 E-value=0.0029 Score=55.43 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=64.1
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
++||+||++ . ..|.+|++.++. +|+ ...++..++.++.|+.+....
T Consensus 14 ~vLL~~~~~-----~---------~~w~~PGG~ve~--gEs------------------~~~aa~REl~EEtG~~~~~~~ 59 (123)
T cd04672 14 KILLVREKS-----D---------GLWSLPGGWADV--GLS------------------PAENVVKEVKEETGLDVKVRK 59 (123)
T ss_pred EEEEEEEcC-----C---------CcEeCCccccCC--CCC------------------HHHHHHHHHHHHhCCeeeEeE
Confidence 899999975 1 389999999965 333 236799999999999987766
Q ss_pred ceeecccccCCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHH
Q 009940 98 EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (522)
Q Consensus 98 l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~a 144 (522)
+..+...+.....+.+..+=..||++...++ ...|....+|+++.+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el 109 (123)
T cd04672 60 LAAVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPNIETSEVGFFALDDL 109 (123)
T ss_pred EEEEeccccccCCCCceEEEEEEEEEEecCCcccCCCceeeeEEECHHHC
Confidence 6655544432210122223345777777665 3478899999999874
No 88
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.78 E-value=0.0038 Score=54.05 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=65.3
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
.++|.|+. + ++||+||+.++ .|.+|++.++. +|. ..+++..++.
T Consensus 4 ~~~i~~~~-~-~vLL~~r~~~~--------------~w~~PgG~ve~--gEt------------------~~~aa~REl~ 47 (120)
T cd04680 4 RAVVTDAD-G-RVLLVRHTYGP--------------GWYLPGGGLER--GET------------------FAEAARRELL 47 (120)
T ss_pred EEEEECCC-C-eEEEEEECCCC--------------cEeCCCCcCCC--CCC------------------HHHHHHHHHH
Confidence 45666665 4 89999986432 79999998865 333 1377999999
Q ss_pred HHcCCeec-cCcceeecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHH
Q 009940 87 EQLGFGVR-DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 87 ~~~gl~l~-~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~ 146 (522)
++.|+... ... .+..+.... ... .....+|.+....+ +..|.....|+++.+.-+
T Consensus 48 EEtG~~~~~~~~--~~~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~ 107 (120)
T cd04680 48 EELGIRLAVVAE--LLGVYYHSA--SGS-WDHVIVFRARADTQPVIRPSHEISEARFFPPDALPE 107 (120)
T ss_pred HHHCCccccccc--eEEEEecCC--CCC-ceEEEEEEecccCCCccCCcccEEEEEEECHHHCcc
Confidence 99999876 333 233333222 222 33445566666544 557888999999887654
No 89
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.75 E-value=0.0028 Score=55.54 Aligned_cols=98 Identities=20% Similarity=0.342 Sum_probs=63.3
Q ss_pred eehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHH
Q 009940 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
|.++||-+.. + ++||+||+.+ +.. .|.||+++++. +|+ ...++..+
T Consensus 2 ~~~~ii~~~~-~-~vLL~~r~~~---~~~---------~w~lPGG~ve~--gEs------------------~~~a~~RE 47 (121)
T cd04669 2 RASIVIINDQ-G-EILLIRRIKP---GKT---------YYVFPGGGIEE--GET------------------PEEAAKRE 47 (121)
T ss_pred ceEEEEEeCC-C-EEEEEEEecC---CCC---------cEECCceeccC--CCC------------------HHHHHHHH
Confidence 4455666542 4 9999998653 223 89999999985 334 13678899
Q ss_pred HHHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC-----C--------CCcccccccccHHHHH
Q 009940 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----N--------QILQEGCKWMSTQSCI 145 (522)
Q Consensus 85 ~l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~--------~~e~~~~~W~~~~~al 145 (522)
+.++.|+.+....+.....+ . ..+..||++..-.| + +.+.....|+++.+.-
T Consensus 48 l~EEtGl~~~~~~~~~~~~~---~------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~ 112 (121)
T cd04669 48 ALEELGLDVRVEEIFLIVNQ---N------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLE 112 (121)
T ss_pred HHHhhCeeEeeeeEEEEEee---C------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcc
Confidence 99999999866554332211 1 23456888877655 1 1223457999987643
No 90
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=96.74 E-value=0.005 Score=53.11 Aligned_cols=94 Identities=14% Similarity=0.271 Sum_probs=63.9
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccC
Q 009940 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (522)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (522)
.++||.||+..+ .-.+ +|.||++.++..+ . ..+.+..++.++.|+.+...
T Consensus 13 ~~~Ll~~r~~~~-~~~g---------~w~~p~G~~~~~e--~------------------~~~~a~Re~~EE~g~~~~~~ 62 (124)
T cd03425 13 GRILIAQRPAGK-HLGG---------LWEFPGGKVEPGE--T------------------PEQALVRELREELGIEVEVG 62 (124)
T ss_pred CEEEEEEeCCCC-CCCC---------eEeCCCcccCCCC--C------------------HHHHHHHHHHHhhCcEEecc
Confidence 389999988766 4455 9999999876432 2 12567789999999987653
Q ss_pred cce-eecccccCCCCCCCCceeEEEEEeEcCCCC--CCcccccccccHHHHHH
Q 009940 97 GEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCIN 146 (522)
Q Consensus 97 ~l~-~~~~w~~~~~~~~~~r~dT~ff~a~~p~~~--~~e~~~~~W~~~~~al~ 146 (522)
... .+.|..+ .......+|.+....+. ..|.....|+++.+..+
T Consensus 63 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 109 (124)
T cd03425 63 ELLATVEHDYP------DKRVTLHVFLVELWSGEPQLLEHQELRWVPPEELDD 109 (124)
T ss_pred ceEEEEEeeCC------CCeEEEEEEEEeeeCCCcccccCceEEEeeHHHccc
Confidence 322 2233222 35777888888877663 35778899999876643
No 91
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=96.72 E-value=0.0053 Score=57.94 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=69.7
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCC-CCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWD-LPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
+++|.|+. | ++||.||.++..+... .|+ +|++.+++.+.- ..++..++
T Consensus 41 ~v~v~~~~-g-~iLL~~R~~~~~~~pg---------~~~~~pGG~ve~GEs~--------------------~eAA~REL 89 (180)
T PRK15393 41 YIVVHDGM-G-KILVQRRTETKDFLPG---------MLDATAGGVVQAGEQL--------------------LESARREA 89 (180)
T ss_pred EEEEECCC-C-eEEEEEeCCCCCCCCC---------cccccCCCcCCCCCCH--------------------HHHHHHHH
Confidence 34556653 5 8999998877666555 554 789999764322 36799999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHHHHHHHhcCC
Q 009940 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVKP 153 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~~l~~~~~ 153 (522)
.++.|+.... +..+..+.... ...++...||.+..... +..|....+|+++.++.+++..+.+
T Consensus 90 ~EEtGl~~~~--~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~ 155 (180)
T PRK15393 90 EEELGIAGVP--FAEHGQFYFED---ENCRVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCDEFTP 155 (180)
T ss_pred HHHHCCCCcc--ceeceeEEecC---CCceEEEEEEEEEeCCCCCCChHHeeEEEECCHHHHhhhhhhcCc
Confidence 9999997432 22222222222 12232223454444322 5678899999999999988766543
No 92
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.72 E-value=0.0044 Score=54.61 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=68.3
Q ss_pred ceehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHH
Q 009940 4 YNVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (522)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (522)
|=.++++.|.. + ++||+||.+.|. ++.|.||++.++.. |. ..+++..
T Consensus 1 ~~~~~vv~~~~-~-~vLl~~r~~~~~-----------~~~w~lPgG~ve~g--Et------------------~~~aa~R 47 (123)
T cd04671 1 YIVAAVILNNQ-G-EVLLIQEAKRSC-----------RGKWYLPAGRMEPG--ET------------------IEEAVKR 47 (123)
T ss_pred CEEEEEEEcCC-C-EEEEEEecCCCC-----------CCeEECceeecCCC--CC------------------HHHHHHH
Confidence 34566666653 3 899999986542 23899999999753 33 1377999
Q ss_pred HHHHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC-------CCCcccccccccHHHH
Q 009940 84 QILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQSC 144 (522)
Q Consensus 84 ~~l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-------~~~e~~~~~W~~~~~a 144 (522)
++.++.|+++....+..+ ... ++.+-..+|.+...+| ++.|..+.+|++..+.
T Consensus 48 El~EEtG~~~~~~~~~~~----~~~----~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el 107 (123)
T cd04671 48 EVKEETGLDCEPTTLLSV----EEQ----GGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDL 107 (123)
T ss_pred HHHHHHCCeeecceEEEE----Ecc----CCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHC
Confidence 999999999987764432 111 1235566777887665 2346668999987765
No 93
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.71 E-value=0.0039 Score=55.50 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=60.1
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeec--c
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR--D 95 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~--~ 95 (522)
++||+||+.. ..|.||++.++. +|. ..+++..++.++.|+.+. .
T Consensus 12 ~vLLv~~~~~--------------~~w~lPgG~ve~--gEt------------------~~~aa~REl~EEtGl~~~~~~ 57 (131)
T cd04686 12 KILLLYTKRY--------------GDYKFPGGGVEK--GED------------------HIEGLIRELQEETGATNIRVI 57 (131)
T ss_pred EEEEEEEcCC--------------CcEECccccCCC--CCC------------------HHHHHHHHHHHHHCCcccccc
Confidence 8999998641 259999999986 333 137799999999999863 2
Q ss_pred Ccceeecc---cccCCCCCCCCceeEEEEEeEcCCC------CCCcc---cccccccHHHHHHH
Q 009940 96 GGEWKLWK---CVEEPEFGPGLTIHTVYIMGKLLDG------NQILQ---EGCKWMSTQSCINC 147 (522)
Q Consensus 96 ~~l~~~~~---w~~~~~~~~~~r~dT~ff~a~~p~~------~~~e~---~~~~W~~~~~al~~ 147 (522)
..+..+.+ |-.+. +...+.-..||++.+..+ +..|. ..+.|+++.++++.
T Consensus 58 ~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 58 EKFGTYTERRPWRKPD--ADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred eEEEEEEeeccccCCC--CceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 23343432 21221 111222356888888655 12222 24899999999985
No 94
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.70 E-value=0.0027 Score=56.06 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=68.8
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
+++.++. + ++||.|++.. . .|+||++.++..+ . ...++..++.+
T Consensus 12 ~~v~~~~-~-~vLL~~r~~~-----~---------~w~~PgG~v~~gE--t------------------~~~aa~REl~E 55 (132)
T cd04677 12 VILLNEQ-G-EVLLQKRSDT-----G---------DWGLPGGAMELGE--S------------------LEETARRELKE 55 (132)
T ss_pred EEEEeCC-C-CEEEEEecCC-----C---------cEECCeeecCCCC--C------------------HHHHHHHHHHH
Confidence 3445443 3 8999888743 2 7999999886533 3 23679999999
Q ss_pred HcCCeeccCccee-ec---ccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHHHHHh
Q 009940 88 QLGFGVRDGGEWK-LW---KCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLAE 150 (522)
Q Consensus 88 ~~gl~l~~~~l~~-~~---~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~~l~~ 150 (522)
+.|+.+....+.. +. .|..+.. +....+-+.||+.....+ +..|.....|+++.++.+++.+
T Consensus 56 E~Gi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 56 ETGLEVEELELLGVYSGKEFYVKPNG-DDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred HhCCeeeeeEEEEEecCCceeecCCC-CcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 9999987654432 21 2332220 222345566777765544 5568889999999988776554
No 95
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=96.68 E-value=0.0056 Score=53.52 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=61.0
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
+++|.|.. | ++||.||+..+ ...+ +|+||++.++.. |. ...++..++.
T Consensus 8 ~~ii~~~~-~-~vll~rR~~~~-~~~g---------~w~~PgG~~~~g--E~------------------~~~a~~Re~~ 55 (129)
T PRK10776 8 VGIIRNPN-N-EIFITRRAADA-HMAG---------KWEFPGGKIEAG--ET------------------PEQALIRELQ 55 (129)
T ss_pred EEEEECCC-C-EEEEEEecCCC-CCCC---------eEECCceecCCC--CC------------------HHHHHHHHHH
Confidence 34555432 3 89998886543 2334 999999877542 22 1245568999
Q ss_pred HHcCCeeccCc-ceeecccccCCCCCCCCceeEEEEEeEcCCC--CCCcccccccccHHHHH
Q 009940 87 EQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCI 145 (522)
Q Consensus 87 ~~~gl~l~~~~-l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~--~~~e~~~~~W~~~~~al 145 (522)
++.|+.+.... +..+. ++.+ .+...-.||.+...++ ...|.....|+++.+.-
T Consensus 56 EE~gl~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 111 (129)
T PRK10776 56 EEVGITVQHATLFEKLE-YEFP-----DRHITLWFWLVESWEGEPWGKEGQPGRWVSQVALN 111 (129)
T ss_pred HHHCCceecceEEEEEE-eeCC-----CcEEEEEEEEEEEECCccCCccCCccEEecHHHCc
Confidence 99998754322 22222 2222 2455566777765544 33467788999887644
No 96
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=96.68 E-value=0.0042 Score=55.29 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=65.0
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
+.|.|.. .++||+||+..| .+.|.+|++.++. ||. -..++.+++.+
T Consensus 5 i~l~~~~--~~vLL~~r~~~~------------~~~w~lPgG~ie~--gEt------------------~~~aA~REl~E 50 (131)
T cd03429 5 VLVIDGG--DRILLARQPRFP------------PGMYSLLAGFVEP--GES------------------LEEAVRREVKE 50 (131)
T ss_pred EEEEeCC--CEEEEEEecCCC------------CCcCcCCcccccC--CCC------------------HHHHHhhhhhh
Confidence 3445442 499999997432 2389999999875 333 12679999999
Q ss_pred HcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHHH
Q 009940 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINC 147 (522)
Q Consensus 88 ~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~~ 147 (522)
+.|+....- . +.... +.. . ++.+ ..+|++....+ +..|.....|++..+..++
T Consensus 51 EtGl~~~~~--~-~l~~~-~~~-~-~~~~-~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 51 EVGIRVKNI--R-YVGSQ-PWP-F-PSSL-MLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred ccCceeeee--E-EEeec-CCC-C-CceE-EEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 999987432 2 22221 111 1 2233 45677777755 4568889999999998886
No 97
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.66 E-value=0.0037 Score=54.52 Aligned_cols=105 Identities=17% Similarity=0.268 Sum_probs=65.7
Q ss_pred eehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHH
Q 009940 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
..+++|.|+. + ++||+||+.- ..|+||++.++.. |. ..+++..+
T Consensus 4 ~v~~ii~~~~-~-~vLl~~r~~~--------------~~w~lPgG~v~~~--E~------------------~~~aa~RE 47 (129)
T cd04676 4 GVTAVVRDDE-G-RVLLIRRSDN--------------GLWALPGGAVEPG--ES------------------PADTAVRE 47 (129)
T ss_pred eEEEEEECCC-C-eEEEEEecCC--------------CcEECCeeccCCC--CC------------------HHHHHHHH
Confidence 3456777654 4 8999998742 4899999988653 33 12678899
Q ss_pred HHHHcCCeeccCcce-eeccc---ccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHH
Q 009940 85 ILEQLGFGVRDGGEW-KLWKC---VEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 85 ~l~~~gl~l~~~~l~-~~~~w---~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~ 146 (522)
+.++.|+.+....+. .+..+ .+.+ .+....+=+.+|.+...++ +..|.....|+++.+.-+
T Consensus 48 l~EE~Gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~ 116 (129)
T cd04676 48 VREETGLDVEVTGLVGIYTGPVHVVTYP-NGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPP 116 (129)
T ss_pred HHHHhCceeEeeEEEEEeecccceeecC-CCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCcc
Confidence 999999987654431 12221 2211 0111233334555666665 556888899999887554
No 98
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=96.60 E-value=0.0069 Score=53.66 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=62.0
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccC
Q 009940 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (522)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (522)
.++||+||+..| ..+ .|.||++.++.-+.- .+++.+++.++.|++....
T Consensus 24 ~~vLL~kr~~~~--~~g---------~w~lPgG~ve~gE~~--------------------~~a~~REl~EEtGl~~~~~ 72 (130)
T cd04511 24 GKVLLCRRAIEP--RHG---------FWTLPAGFMENGETT--------------------EQGALRETWEEAGARVEID 72 (130)
T ss_pred CEEEEEEecCCC--CCC---------eEECCcccccCCCCH--------------------HHHHHHHHHHHhCCEEEee
Confidence 499999997654 223 899999999753332 3679999999999997654
Q ss_pred cceeecccccCCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHH
Q 009940 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (522)
Q Consensus 97 ~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~a 144 (522)
.+... .+. . ...--..||++.+..+ .+.|..+..|+++.+.
T Consensus 73 ~~~~~----~~~--~-~~~~~~~~f~~~~~~~~~~~~~e~~~~~~~~~~~l 116 (130)
T cd04511 73 GLYAV----YSV--P-HISQVYMFYRARLLDLDFAPGPESLEVRLFTEEEI 116 (130)
T ss_pred eEEEE----Eec--C-CceEEEEEEEEEEcCCcccCCcchhceEEECHHHC
Confidence 43322 111 1 1223356788888877 5567888999987654
No 99
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=96.57 E-value=0.0081 Score=55.40 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=69.4
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCC-ccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
++|.|.. | ++||.||++.-..-+. .|++| ++.+.. ||. ++++.|+.
T Consensus 32 v~v~~~~-g-~vLl~kR~~~k~~~PG---------~W~~~~gG~v~~--GE~--------------------eaa~REl~ 78 (158)
T TIGR02150 32 VFLFNEE-G-QLLLQRRALSKITWPG---------VWTNSCCSHPLP--GEL--------------------EAAIRRLR 78 (158)
T ss_pred EEEEcCC-C-eEEEEeccCCCcCCCC---------CccccccCCCCc--ccH--------------------HHHHHHHH
Confidence 4455432 4 8999988763223334 99997 576653 223 78999999
Q ss_pred HHcCCeeccCcceeec--ccccCCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHHHHHHHhcC
Q 009940 87 EQLGFGVRDGGEWKLW--KCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~~--~w~~~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~~l~~~~ 152 (522)
++.|+.+....+..+. ++......+ ..+=..+|.+..+.. +..|..+..|+++.+..+++.+.+
T Consensus 79 EE~Gl~~~~~~l~~~~~~~~~~~~~~g--~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 79 EELGIPADDVPLTVLPRFSYRARDAWG--EHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred HHHCCCccccceEEcceEEEEEecCCC--cEEEEEEEEEecCCcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 9999988765432221 233222112 122234555666543 456999999999999998888665
No 100
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.57 E-value=0.0058 Score=53.75 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=65.2
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.+++|-|+. + ++||+||+.+ ... .|.+|++.++. +|. ..+++..++
T Consensus 5 ~~~~v~~~~-~-~vLl~~r~~~---~~~---------~w~~PGG~ve~--gEt------------------~~~aa~RE~ 50 (127)
T cd04670 5 VGGLVLNEK-N-EVLVVQERNK---TPN---------GWKLPGGLVDP--GED------------------IFDGAVREV 50 (127)
T ss_pred EEEEEEcCC-C-eEEEEEccCC---CCC---------cEECCCccCCC--CCC------------------HHHHHHHHH
Confidence 345666665 3 8999988664 223 89999999964 333 236799999
Q ss_pred HHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCC--C----CCCcccccccccHHHHHH
Q 009940 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLD--G----NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 86 l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~--~----~~~e~~~~~W~~~~~al~ 146 (522)
.++.|+.+....+..+..|-.. . ....+ .||+..+.. + +..|.....|+++.+.++
T Consensus 51 ~EE~Gl~~~~~~~~~~~~~~~~---~-~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 51 LEETGIDTEFVSVVGFRHAHPG---A-FGKSD-LYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred HHHHCCCcceeEEEEEEecCCC---C-cCcee-EEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 9999998765544443333221 1 12333 445555532 1 456778899999998754
No 101
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.57 E-value=0.012 Score=60.88 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=31.4
Q ss_pred CccEEEEcCCCccccCCHHHHHHhC-----CCCEEEEcHhHHHHhccC
Q 009940 256 RKLIVFVTHHHRDHVDGLSIIQKCN-----PDAILLAHENTMRRIGKD 298 (522)
Q Consensus 256 ~i~~IiiTH~H~DHiGG~~~l~~~~-----p~a~V~a~~~~~~~l~~~ 298 (522)
.|...+|||.|.||+.|+-.-.... ..-+||+.+.+.+.+++.
T Consensus 79 ~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~h 126 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNH 126 (335)
T ss_pred hhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHc
Confidence 4568999999999999985322111 245799999998888654
No 102
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=96.54 E-value=0.0086 Score=56.66 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=67.2
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCC-ccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
++|.|+. | ++||.||+..-.. ....|++| ++.+++. |. ..+++..|+.
T Consensus 39 v~i~~~~-g-~vLL~rR~~~~~~---------~PG~w~~~~gG~ve~G--Et------------------~~~aa~REl~ 87 (184)
T PRK03759 39 CYLFDAD-G-RLLVTRRALSKKT---------WPGVWTNSCCGHPQPG--ES------------------LEDAVIRRCR 87 (184)
T ss_pred EEEEcCC-C-eEEEEEccCCCCC---------CCCcccccccCCCCCC--CC------------------HHHHHHHHHH
Confidence 4455543 4 8999997542111 13378887 5666543 22 1367999999
Q ss_pred HHcCCeeccCc-ceeecccc--cCCCCCCCCceeEEEEEeEcCCC---CCCcccccccccHHHHHHHHHhcC
Q 009940 87 EQLGFGVRDGG-EWKLWKCV--EEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (522)
Q Consensus 87 ~~~gl~l~~~~-l~~~~~w~--~~~~~~~~~r~dT~ff~a~~p~~---~~~e~~~~~W~~~~~al~~l~~~~ 152 (522)
++.|+....-. +..-..+. .+. +.-...-..+|++..+.. +..|..+..|+++.+..+++..-.
T Consensus 88 EEtGl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~~ 157 (184)
T PRK03759 88 EELGVEITDLELVLPDFRYRATDPN--GIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPADLLRAVDATP 157 (184)
T ss_pred HHhCCCccccccccceEEEEEecCC--CceeeEEEEEEEEEECCCCCCChhHeeeEEEECHHHHHHHHHhCC
Confidence 99999875221 11111221 122 211112334677776533 557889999999999999887654
No 103
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=96.50 E-value=0.0062 Score=52.02 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=69.2
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
++++.|.. .++||.||+.. ....|++|++.++.. ++ -..++..++.
T Consensus 4 ~~i~~~~~--~~ill~kr~~~------------~~~~~~~p~G~~~~~--e~------------------~~~~a~RE~~ 49 (123)
T cd02883 4 GAVILDED--GRVLLVRRADS------------PGGLWELPGGGVEPG--ET------------------LEEAAIREVR 49 (123)
T ss_pred EEEEECCC--CCEEEEEEcCC------------CCCeEeCCcccccCC--CC------------------HHHHHHHHHH
Confidence 35566554 38999999887 234999999987753 22 1267899999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCCC-----CCcccccccccHHHHHH
Q 009940 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----QILQEGCKWMSTQSCIN 146 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~~-----~~e~~~~~W~~~~~al~ 146 (522)
++.|+..........-....+. ..+..-..+|.+..+.++ ..|.....|+++.+..+
T Consensus 50 EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 50 EETGLDVDVLRLLGVYEVESPD---EGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred HhhCccceeeeEEEEEEeeccC---CCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCcc
Confidence 9999987633222222222221 246777778888887763 36778889999887765
No 104
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=96.43 E-value=0.0072 Score=62.91 Aligned_cols=98 Identities=16% Similarity=0.247 Sum_probs=66.6
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
++||+||...|. .+ .|.||++.++..+.- .+++..|+.|+.|+++....
T Consensus 215 ~VLLvrR~~~p~--~g---------~W~lPGG~ve~gEt~--------------------~~Aa~REl~EETGl~v~~~~ 263 (340)
T PRK05379 215 HVLLVRRRAEPG--KG---------LWALPGGFLEQDETL--------------------LDACLRELREETGLKLPEPV 263 (340)
T ss_pred EEEEEEecCCCC--CC---------eEECCcccCCCCCCH--------------------HHHHHHHHHHHHCCcccccc
Confidence 899999987654 34 999999999874322 36899999999999875543
Q ss_pred ceee---cccccCCCCCCCCceeEEEEEeEcCCC------CCCcccccccccHHHHHH
Q 009940 98 EWKL---WKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 98 l~~~---~~w~~~~~~~~~~r~dT~ff~a~~p~~------~~~e~~~~~W~~~~~al~ 146 (522)
+... ....+.+...+..+.=|.+|.+.++.+ .+.|....+|+++.++.+
T Consensus 264 l~~~~~~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~ 321 (340)
T PRK05379 264 LRGSIRDQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLA 321 (340)
T ss_pred cceeeeeeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhh
Confidence 3211 111122211122355577788888755 356889999999988765
No 105
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=96.38 E-value=0.01 Score=57.12 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=72.5
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccC
Q 009940 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (522)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (522)
.++||+||-++|-.... .+.-+|-+|++.++. ||+ -..++..|+.++.|+...
T Consensus 62 ~~vlLvrQyR~~~~~~~-----~~~~~lE~PAG~vd~--gE~------------------p~~aA~REL~EETGy~a~-- 114 (202)
T PRK10729 62 DEVVLIEQIRIAAYDTS-----ETPWLLEMVAGMIEE--GES------------------VEDVARREAIEEAGLIVG-- 114 (202)
T ss_pred CEEEEEEeeecccccCC-----CCCeEEEccceEcCC--CCC------------------HHHHHHHHHHHHhCceee--
Confidence 39999999999875421 112389999999984 444 136799999999999853
Q ss_pred cceeecccccCCCCCCCCceeEEEEEeEc--C---C--C--CCCcccccccccHHHHHHHHHh
Q 009940 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKL--L---D--G--NQILQEGCKWMSTQSCINCLAE 150 (522)
Q Consensus 97 ~l~~~~~w~~~~~~~~~~r~dT~ff~a~~--p---~--~--~~~e~~~~~W~~~~~al~~l~~ 150 (522)
.+.++-+....+ +- ...-+.+|+|.. . . + |++|..+..|++..++++++.+
T Consensus 115 ~~~~l~~~~~sp--g~-~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~ 174 (202)
T PRK10729 115 RTKPVLSYLASP--GG-TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE 174 (202)
T ss_pred EEEEEEEEEcCC--Cc-CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHc
Confidence 333343333333 22 355678888873 1 1 1 6678888999999999998753
No 106
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=96.26 E-value=0.014 Score=52.38 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=62.9
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
++|-|.. +.++||+||.. . ..|.+|++.++. +|. ..+++..++.+
T Consensus 7 ~~v~~~~-~~~vLLv~r~~-----~---------~~w~lPgG~ve~--gE~------------------~~~aa~REl~E 51 (138)
T cd03674 7 AFVVNPD-RGKVLLTHHRK-----L---------GSWLQPGGHIDP--DES------------------LLEAALRELRE 51 (138)
T ss_pred EEEEeCC-CCeEEEEEEcC-----C---------CcEECCceecCC--CCC------------------HHHHHHHHHHH
Confidence 3444433 24999999864 1 389999999987 444 23779999999
Q ss_pred HcCCeeccCccee-----ecccccCCC-CC-CCCc-eeEEEEEeEcCCC-----CCCcccccccccHHHHHH
Q 009940 88 QLGFGVRDGGEWK-----LWKCVEEPE-FG-PGLT-IHTVYIMGKLLDG-----NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 88 ~~gl~l~~~~l~~-----~~~w~~~~~-~~-~~~r-~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~ 146 (522)
+.|+.+....... ..++..... .+ +... +++. |++..+.+ +..|..++.|+++.+...
T Consensus 52 EtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 122 (138)
T cd03674 52 ETGIELLGLRPLSVLVDLDVHPIDGHPKRGVPGHLHLDLR-FLAVAPADDVAPPKSDESDAVRWFPLDELAS 122 (138)
T ss_pred HHCCCcccceeccccccceeEeecCCCCCCCCCcEEEEEE-EEEEccCccccCCCCCcccccEEEcHHHhhh
Confidence 9999765433322 123322110 00 1111 3333 66666555 356889999999987754
No 107
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=96.23 E-value=0.0077 Score=64.33 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=65.8
Q ss_pred CccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCC-CC-CCceecCCCceEEECCEEEEEEeCCCCCCCCe
Q 009940 256 RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-WS-LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHV 333 (522)
Q Consensus 256 ~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~-~~-~~~~~l~~g~~l~lgg~~l~vi~tPGHT~g~i 333 (522)
+..+=++||.|.||..|+..--. ..++|++..++..+...- .. .-.+.+.-++.+.+.+..+.++... |.||.+
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~---~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldAn-HCPGa~ 187 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWS---HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDAN-HCPGAV 187 (481)
T ss_pred ccceeeeeccccccccccccccc---CCcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEeccc-cCCCce
Confidence 45688999999999988865422 334999988877654321 11 1235567788888888888887764 999999
Q ss_pred EEEeCC---CCEEEEcccc
Q 009940 334 ALLHAS---TNSLIVGDHC 349 (522)
Q Consensus 334 ~l~~~~---~~vLftGD~l 349 (522)
+|+.+. ..+|++||.=
T Consensus 188 mf~F~~~~~~~~lhtGDFR 206 (481)
T KOG1361|consen 188 MFLFELSFGPCILHTGDFR 206 (481)
T ss_pred EEEeecCCCceEEecCCcc
Confidence 998853 3799999973
No 108
>PLN02325 nudix hydrolase
Probab=96.07 E-value=0.019 Score=52.12 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=60.8
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
+.||.||+.+|. .+ .|.||++.++..+.- .+++..++.++.|+.+....
T Consensus 21 ~vLL~rr~~~~~--~g---------~W~lPGG~ve~gEs~--------------------~~aa~REv~EEtGl~v~~~~ 69 (144)
T PLN02325 21 SVLLGRRRSSIG--DS---------TFALPGGHLEFGESF--------------------EECAAREVKEETGLEIEKIE 69 (144)
T ss_pred EEEEEEecCCCC--CC---------eEECCceeCCCCCCH--------------------HHHHHHHHHHHHCCCCcceE
Confidence 899999987653 34 899999998744322 37899999999999877655
Q ss_pred ceeeccc-ccCCCCCCCCceeEEEEEeEcCCC-------CCCcccccccccHHH
Q 009940 98 EWKLWKC-VEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQS 143 (522)
Q Consensus 98 l~~~~~w-~~~~~~~~~~r~dT~ff~a~~p~~-------~~~e~~~~~W~~~~~ 143 (522)
+...... .... ..+..+-+.||.+...++ +..|..+..|+++.+
T Consensus 70 ~l~~~~~~~~~~--~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~ 121 (144)
T PLN02325 70 LLTVTNNVFLEE--PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDN 121 (144)
T ss_pred EEEEecceeecC--CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHH
Confidence 4433222 2111 223455677787776544 223346679998655
No 109
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=96.06 E-value=0.019 Score=50.33 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=62.0
Q ss_pred eehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHH
Q 009940 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
+..++|.+ ++ .+||+||+. . ..|.+|++.++..+.- .+++..+
T Consensus 3 ~~~~vi~~--~~-~vLlv~~~~-----~---------~~~~lPGG~ve~gEt~--------------------~~aa~RE 45 (125)
T cd04689 3 RARAIVRA--GN-KVLLARVIG-----Q---------PHYFLPGGHVEPGETA--------------------ENALRRE 45 (125)
T ss_pred EEEEEEEe--CC-EEEEEEecC-----C---------CCEECCCCcCCCCCCH--------------------HHHHHHH
Confidence 34445542 34 899999842 1 2699999988754332 3789999
Q ss_pred HHHHcCCeeccCcceee--cccccCCCCCCCCceeEEEEEeEcCCC-------CCCcccccccccHHH
Q 009940 85 ILEQLGFGVRDGGEWKL--WKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQS 143 (522)
Q Consensus 85 ~l~~~gl~l~~~~l~~~--~~w~~~~~~~~~~r~dT~ff~a~~p~~-------~~~e~~~~~W~~~~~ 143 (522)
+.++.|+.+....+... ..|..+ +.....-+.||.+.++.+ .+.|....+|++..+
T Consensus 46 l~EEtGl~~~~~~~l~~~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~e 110 (125)
T cd04689 46 LQEELGVAVSDGRFLGAIENQWHEK---GVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSD 110 (125)
T ss_pred HHHHhCceeeccEEEEEEeeeeccC---CceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHH
Confidence 99999998765433211 123222 111122245788887753 345678899999877
No 110
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.05 E-value=0.02 Score=50.04 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=59.5
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
++|.+.. + ++||.||++.. .... +|+||++.++. ++. . ..+...++.+
T Consensus 9 ~ii~~~~-~-~vLl~~R~~~~-~~~g---------~w~~Pgg~ve~--ge~-------------~-----~~~~~RE~~E 56 (128)
T TIGR00586 9 GIIRNEN-G-EIIITRRADGH-MFAK---------LLEFPGGKEEG--GET-------------P-----EQAVVRELEE 56 (128)
T ss_pred EEEECCC-C-EEEEEEEeCCC-CCCC---------eEECCCcccCC--CCC-------------H-----HHHHHHHHHH
Confidence 3444433 3 78888886543 3345 99999997763 233 0 1334589999
Q ss_pred HcCCeeccCc-ceeecccccCCCCCCCCceeEEEEEeEcCCCC--CCcccccccccHHH
Q 009940 88 QLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQS 143 (522)
Q Consensus 88 ~~gl~l~~~~-l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~~--~~e~~~~~W~~~~~ 143 (522)
+.|+.+.... +..+.|- . ..+...-.||++....+. ..+.....|+++++
T Consensus 57 E~g~~~~~~~~~~~~~h~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 109 (128)
T TIGR00586 57 EIGIPQHFSEFEKLEYEF-Y-----PRHITLWFWLLERWEGGPPGKEGQPEEWWVLVGL 109 (128)
T ss_pred HHCCcceeeeEEEEEEEE-C-----CCcEEEEEEEEEEEcCCCcCcccccccEEeCHHH
Confidence 9999865442 2233331 1 135667777888776552 33567789998664
No 111
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=96.01 E-value=0.012 Score=55.99 Aligned_cols=99 Identities=10% Similarity=0.071 Sum_probs=69.0
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeecc
Q 009940 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (522)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (522)
+.++||.||++.++...+ -|.||+++++..+... .++++.|+.++.|+...
T Consensus 43 ~~~vLl~~R~~~~r~~~G---------~~~~PGG~~e~~de~~-------------------~~tA~REl~EEtGl~~~- 93 (190)
T PRK10707 43 QPTLLLTQRSIHLRKHAG---------QVAFPGGAVDPTDASL-------------------IATALREAQEEVAIPPS- 93 (190)
T ss_pred CCEEEEEEeCCcccCCCC---------cEEcCCcccCCCcccH-------------------HHHHHHHHHHHHCCCcc-
Confidence 349999999887766555 7899999998643212 36899999999999753
Q ss_pred CcceeecccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHH
Q 009940 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (522)
Q Consensus 96 ~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~ 147 (522)
.+..+. -+.+- .....|.+.-|++.+... |..|..+..|++..+++++
T Consensus 94 -~~~~lg-~l~~~--~~~~~~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 94 -AVEVIG-VLPPV--DSSTGYQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred -ceEEEE-Eeeee--eccCCcEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCc
Confidence 333222 22221 122467777777776554 6789999999999988874
No 112
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=95.81 E-value=0.032 Score=52.48 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=69.4
Q ss_pred hcCCCCCceeEEeecCCCCCCCccccccccccccCC-CCccccccccCCCCCCceeeeccccccccccchhchHHHHHHH
Q 009940 10 LKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWD-LPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQ 88 (522)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (522)
+.|...+.++++.||+.--+..+. .|| +|++.+++ ||. ..+++..|+.++
T Consensus 41 ~~~~~~~~~l~lqrRs~~K~~~Pg---------~wd~~~~G~v~~--gE~------------------~~~aA~REl~EE 91 (180)
T cd03676 41 VRDEDGGLRIWIPRRSPTKATWPG---------MLDNLVAGGLGH--GEG------------------PEETLVKECDEE 91 (180)
T ss_pred EEcCCCCeEEEEEeccCCCCCCCC---------ceeeecccCCCC--CCC------------------HHHHHHHHHHHH
Confidence 445432458888888875544555 897 88888864 333 236799999999
Q ss_pred cCCeeccCc-ceeec--cccc--CCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHHHHh
Q 009940 89 LGFGVRDGG-EWKLW--KCVE--EPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAE 150 (522)
Q Consensus 89 ~gl~l~~~~-l~~~~--~w~~--~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~l~~ 150 (522)
.|+...... +.... .+.. +. +.-.+-...+|.+.++.. +..|..+..|+++.++++++.+
T Consensus 92 ~Gl~~~~~~~l~~~g~~~~~~~~~~--~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~ 161 (180)
T cd03676 92 AGLPEDLVRQLKPVGVVSYLREGEA--GGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKE 161 (180)
T ss_pred hCCCHHHHhhceeccEEEEEEEcCC--CcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHc
Confidence 999865432 21111 1121 12 111223345566666443 5678999999999999999874
No 113
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=95.43 E-value=0.12 Score=52.08 Aligned_cols=122 Identities=15% Similarity=0.055 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCh-HHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccC-----CCCCC
Q 009940 230 GEALIVDPGCRSE-FHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD-----DWSLG 303 (522)
Q Consensus 230 g~~iLIDtG~~~~-~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~-----~~~~~ 303 (522)
|+..+..|-.... ..+.+.++..+.|.+++|+.-....-|.--++.++++||+|+|++.+.-...-.+. ... .
T Consensus 30 G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s~p~~lp~~~~g~~-~ 108 (285)
T PF14234_consen 30 GGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWSFPLNLPLSWLGIP-R 108 (285)
T ss_pred CCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCcccccccCchhhcCCc-c
Confidence 5566666655443 23333333333488999998766556888899999999999999987643211000 000 0
Q ss_pred ceecC-CCceEEEC-CEEEEEE---eCCCCCCCCeEEEeCCCCEEEEcccccCC
Q 009940 304 YTSVS-GSEDICVG-GQRLTVV---FSPGHTDGHVALLHASTNSLIVGDHCVGQ 352 (522)
Q Consensus 304 ~~~l~-~g~~l~lg-g~~l~vi---~tPGHT~g~i~l~~~~~~vLftGD~l~~~ 352 (522)
...+. +.....++ +...+++ ...+|.-..++|++..++.|+..|+++.-
T Consensus 109 ~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDll~ni 162 (285)
T PF14234_consen 109 DKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDLLFNI 162 (285)
T ss_pred ccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhchhhC
Confidence 01111 11111111 2223333 34568888999999999999999998754
No 114
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=95.42 E-value=0.06 Score=50.93 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=67.1
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccC
Q 009940 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (522)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~ 96 (522)
.++||+||.+++. ++..|.||++.++. +|. ...++..|+.++.|+.. +
T Consensus 59 ~~vlLvrq~r~~~----------~~~~~elPaG~ve~--gE~------------------~~~aA~REl~EEtG~~~--~ 106 (185)
T PRK11762 59 DTLLLIREYAAGT----------ERYELGFPKGLIDP--GET------------------PLEAANRELKEEVGFGA--R 106 (185)
T ss_pred CEEEEEEeecCCC----------CCcEEEccceeCCC--CCC------------------HHHHHHHHHHHHHCCCC--c
Confidence 3899999976653 34489999999985 443 13779999999999974 4
Q ss_pred cceeecccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHHHHhcC
Q 009940 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAEVK 152 (522)
Q Consensus 97 ~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~l~~~~ 152 (522)
.+.........+ +-. .-.+.+|+|..... +..|..+..|++..++.+++..-+
T Consensus 107 ~l~~l~~~~~~~--~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~ 164 (185)
T PRK11762 107 QLTFLKELSLAP--SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARPD 164 (185)
T ss_pred ceEEEEEEecCC--Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcCC
Confidence 444444333223 211 22334455553222 667788899999999988877543
No 115
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.26 E-value=0.047 Score=46.87 Aligned_cols=85 Identities=22% Similarity=0.407 Sum_probs=58.6
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
++||+||+. ..|.+|++.++. +|+ ...++..++.++.|+....
T Consensus 12 ~vLlv~r~~---------------~~w~~PgG~ve~--gE~------------------~~~aa~REl~EEtGl~~~~-- 54 (112)
T cd04667 12 RVLLVRKSG---------------SRWALPGGKIEP--GET------------------PLQAARRELQEETGLQGLD-- 54 (112)
T ss_pred EEEEEEcCC---------------CcEeCCCCcCCC--CCC------------------HHHHHHHHHHHHhCCcccc--
Confidence 899999852 389999999876 333 2377999999999997532
Q ss_pred ceeecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHHHH
Q 009940 98 EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 98 l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~al~ 146 (522)
+..+..+ . . ... ...+|++.++.+ ...|.....|+++.++.+
T Consensus 55 ~~~~~~~-~-~----~~~-~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 100 (112)
T cd04667 55 LLYLFHV-D-G----GST-RHHVFVASVPPSAQPKPSNEIADCRWLSLDALGD 100 (112)
T ss_pred eEEEEEE-e-C----CCE-EEEEEEEEcCCcCCCCCchheeEEEEecHHHhhh
Confidence 2222222 1 1 122 346788887765 456778999999988766
No 116
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=95.09 E-value=0.075 Score=50.68 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=75.0
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (522)
++++-++.++ +++|+||-+||-...+ ..+.-+|-||++.++. +.. .+++..|+.
T Consensus 49 ~Vl~~~~~~~-~vvLvrQyR~~v~~~~----~~~~~~lElPAG~vd~--~~p-------------------~~aA~REL~ 102 (191)
T PRK15009 49 TILLYNAKKK-TVVLIRQFRVATWVNG----NESGQLIETCAGLLDN--DEP-------------------EVCIRKEAI 102 (191)
T ss_pred EEEEEECCCC-EEEEEEcccccccccC----CCCceEEEEeccccCC--CCH-------------------HHHHHHHHH
Confidence 3444555544 9999999999963211 1234589999999973 112 367899999
Q ss_pred HHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEc----C----CCCCCcccccccccHHHHHHHHHhc
Q 009940 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL----L----DGNQILQEGCKWMSTQSCINCLAEV 151 (522)
Q Consensus 87 ~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~----p----~~~~~e~~~~~W~~~~~al~~l~~~ 151 (522)
++.|+.. +.+.+.....+.+ |-. -=-+.+|+|.. . .+|.+|.-+..|++..++.+++.+=
T Consensus 103 EETGy~a--~~~~~l~~~~~sp--G~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 103 EETGYEV--GEVRKLFELYMSP--GGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred HhhCCcc--ceEEEeeEEEcCC--ccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 9999975 4445555544444 322 12256666763 1 1267788899999999999987653
No 117
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.81 E-value=0.085 Score=47.18 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=59.0
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCee-ccC
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGV-RDG 96 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l-~~~ 96 (522)
++||+|+..+-... .+.|++|++.++. +|. ..+++..++.++.|+.+ ...
T Consensus 13 ~vLl~r~~~~~~~~---------~~~w~~PgG~ve~--gE~------------------~~~a~~Re~~EE~G~~~~~~~ 63 (133)
T cd04685 13 RVLLLRGDDPDSPG---------PDWWFTPGGGVEP--GES------------------PEQAARRELREETGITVADLG 63 (133)
T ss_pred eEEEEEEeCCCCCC---------CCEEECCcCCCCC--CCC------------------HHHHHHHHHHHHHCCcccccc
Confidence 89999877542222 3399999999864 333 23678899999999987 333
Q ss_pred cce-eecccccCCCCCCCCceeEEEEEeEcCCCC-------CC---cccccccccHHHHHH
Q 009940 97 GEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QI---LQEGCKWMSTQSCIN 146 (522)
Q Consensus 97 ~l~-~~~~w~~~~~~~~~~r~dT~ff~a~~p~~~-------~~---e~~~~~W~~~~~al~ 146 (522)
.+. .-.+..+-. +.+.+=...||++.++.++ .. +....+|+++.+..+
T Consensus 64 ~~~~~~~~~f~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~ 122 (133)
T cd04685 64 PPVWRRDAAFTFL--GVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAA 122 (133)
T ss_pred ceEEEEEEEEEec--CccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhh
Confidence 221 111111212 2122224568899888641 11 235789999988655
No 118
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=94.79 E-value=0.055 Score=54.04 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=61.8
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeecc
Q 009940 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (522)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (522)
+.++||+||...| .. .|.+|++.++. ||+ -.+++..|+.|+.|+.+..
T Consensus 142 ~~~iLL~rr~~~~---~g---------~wslPgG~vE~--GEs------------------~eeAa~REv~EEtGl~v~~ 189 (256)
T PRK00241 142 GDEILLARHPRHR---NG---------VYTVLAGFVEV--GET------------------LEQCVAREVMEESGIKVKN 189 (256)
T ss_pred CCEEEEEEccCCC---CC---------cEeCcccCCCC--CCC------------------HHHHhhhhhhhccCceeee
Confidence 3599999997665 33 89999999976 444 1267899999999998754
Q ss_pred CcceeecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHH
Q 009940 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSC 144 (522)
Q Consensus 96 ~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~a 144 (522)
-....--.|- | + ..-..+|.|....+ +..|..+..|+++.+.
T Consensus 190 ~~~~~s~~~~----~--p-~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del 235 (256)
T PRK00241 190 LRYVGSQPWP----F--P-HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDEL 235 (256)
T ss_pred eEEEEeEeec----C--C-CeEEEEEEEEecCCcccCCcccEEEEEEECHHHC
Confidence 3222111231 1 2 23456778887655 5578899999998873
No 119
>PRK08999 hypothetical protein; Provisional
Probab=94.62 E-value=0.088 Score=53.94 Aligned_cols=100 Identities=16% Similarity=0.261 Sum_probs=60.5
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.+++|.+.. + ++||.||+.. +...+ +|.||++.++. +|+ ..++..+++
T Consensus 8 ~~~vi~~~~-~-~vLL~kR~~~-~~~~g---------~w~~PgG~ve~--gE~------------------~~~aa~RE~ 55 (312)
T PRK08999 8 AAGVIRDAD-G-RILLARRPEG-KHQGG---------LWEFPGGKVEP--GET------------------VEQALAREL 55 (312)
T ss_pred EEEEEECCC-C-eEEEEEecCC-CCCCC---------eEECCccCCCC--CCC------------------HHHHHHHHH
Confidence 455566542 3 8999888543 33445 99999988764 233 114566999
Q ss_pred HHHcCCeeccCcc-eeecccccCCCCCCCCceeEEEEEeEcCCC--CCCcccccccccHHH
Q 009940 86 LEQLGFGVRDGGE-WKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQS 143 (522)
Q Consensus 86 l~~~gl~l~~~~l-~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~--~~~e~~~~~W~~~~~ 143 (522)
.++.|+....... ... ++.-+ .+.+.-.||....+.+ ...|....+|+++++
T Consensus 56 ~EE~Gl~~~~~~~l~~~-~h~~~-----~~~~~i~~y~~~~~~~~~~~~e~~~~~Wv~~~e 110 (312)
T PRK08999 56 QEELGIEVTAARPLITV-RHDYP-----DKRVRLDVRRVTAWQGEPHGREGQPLAWVAPDE 110 (312)
T ss_pred HHHhCCceecceeEEEE-EEEcC-----CCeEEEEEEEEEEecCcccCccCCccEEecHHH
Confidence 9999998654332 222 22211 2344455666666555 334667789998764
No 120
>PLN02709 nudix hydrolase
Probab=94.48 E-value=0.11 Score=50.58 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=69.3
Q ss_pred CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeec
Q 009940 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (522)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (522)
++..+||+||+...+-..+ -|-||++++++.+... ..+++.|..++.|+...
T Consensus 49 ~~~~vLl~~Rs~~l~~h~G---------qiafPGG~~e~~D~~~-------------------~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 49 NELRVILTKRSSTLSSHPG---------EVALPGGKRDEEDKDD-------------------IATALREAREEIGLDPS 100 (222)
T ss_pred CceEEEEEEcCCCCCCCCC---------CccCCCcccCCCCCCH-------------------HHHHHHHHHHHHCCCch
Confidence 4679999999988765555 8999999998764222 37899999999999765
Q ss_pred cCcce-eecccccCCCCCCCCceeEEEEEeEcCCC-------CCCcccccccccHHHHHH
Q 009940 95 DGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 95 ~~~l~-~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-------~~~e~~~~~W~~~~~al~ 146 (522)
...++ .+...+ .+..|--.=|||.+++. +..|..+.+|++-+.-++
T Consensus 101 ~v~vlg~L~~~~------t~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~ 154 (222)
T PLN02709 101 LVTIISVLEPFV------NKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLK 154 (222)
T ss_pred heEEeeecCCeE------CCCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhC
Confidence 33322 333222 23466666677777542 567999999998666554
No 121
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=94.46 E-value=0.096 Score=46.46 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=59.9
Q ss_pred CCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeec
Q 009940 15 NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (522)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~ 94 (522)
+.+++||+||..|-.... +...|.||++.++..+ . ...++..++.++.|+...
T Consensus 13 ~~~~vlL~~~~~~~~~~~-------~~~~W~lPgG~ie~~E--~------------------~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 13 GRIEVLLVHPGGPFWANK-------DLGAWSIPKGEYTEGE--D------------------PLLAAKREFSEETGFCVD 65 (126)
T ss_pred CcEEEEEEEccCccccCC-------CCCEEECCcccCCCCc--C------------------HHHHHHHHHHHHhCCcce
Confidence 466899999954311111 2448999999997633 3 137799999999999876
Q ss_pred cCcceeecccccCCCCCC------------CCceeEEEEEeEcCCC----C-CCccccccccc
Q 009940 95 DGGEWKLWKCVEEPEFGP------------GLTIHTVYIMGKLLDG----N-QILQEGCKWMS 140 (522)
Q Consensus 95 ~~~l~~~~~w~~~~~~~~------------~~r~dT~ff~a~~p~~----~-~~e~~~~~W~~ 140 (522)
..+..+..+..+. +. -...-..+|.+..|++ . ..|.....|.+
T Consensus 66 -~~~~~l~~~~~~~--~~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 125 (126)
T cd04662 66 -GPFIDLGSLKQSG--GKVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD 125 (126)
T ss_pred -eeEEeEEEEECCC--CeEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence 4444455554443 20 1122235566666665 1 46778888875
No 122
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=94.40 E-value=0.12 Score=49.13 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=63.0
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHH
Q 009940 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (522)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (522)
++.++..+.+|+||+||+. ...|.||++.+++.+.-. .++..++.+
T Consensus 40 i~~~~~~~~l~vLl~~r~~--------------~g~walPGG~v~~~E~~~--------------------~aa~Rel~E 85 (186)
T cd03670 40 IHPKSGKPILQFVAIKRPD--------------SGEWAIPGGMVDPGEKIS--------------------ATLKREFGE 85 (186)
T ss_pred EEecCCCCeeEEEEEEeCC--------------CCcCcCCeeeccCCCCHH--------------------HHHHHHHHH
Confidence 4445556688999999943 138999999997744222 567788888
Q ss_pred HcCCeeccC-----------------cceeecccccCCCCCCCCceeEEEEEeEcCCC---------CCCcccccccccH
Q 009940 88 QLGFGVRDG-----------------GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---------NQILQEGCKWMST 141 (522)
Q Consensus 88 ~~gl~l~~~-----------------~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~---------~~~e~~~~~W~~~ 141 (522)
+.|+.+... ...-|......+.-...-|+.|.=|....+++ ..+++.+..|++.
T Consensus 86 Et~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v 165 (186)
T cd03670 86 EALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDI 165 (186)
T ss_pred HHcccccccchhhhhhcchhhhhcccccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEc
Confidence 886543221 12223333332200011156777776555432 3458999999988
Q ss_pred HHHH
Q 009940 142 QSCI 145 (522)
Q Consensus 142 ~~al 145 (522)
.+..
T Consensus 166 ~~l~ 169 (186)
T cd03670 166 DSKL 169 (186)
T ss_pred cccc
Confidence 7654
No 123
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=94.04 E-value=0.11 Score=45.62 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=64.3
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
.+||+|+.. .-|+||++.++..+.- ..++..++.++.|+.. ..
T Consensus 12 ~vLl~~~~~---------------~~w~lPgG~ve~gE~~--------------------~~aa~REl~EE~G~~~--~~ 54 (118)
T cd04665 12 GLLLVRHKD---------------RGWEFPGGHVEPGETI--------------------EEAARREVWEETGAEL--GS 54 (118)
T ss_pred EEEEEEeCC---------------CEEECCccccCCCCCH--------------------HHHHHHHHHHHHCCcc--Cc
Confidence 899999851 1599999999744322 2678999999999987 45
Q ss_pred ceeecccccCCCCCCCCceeEEEEEeEcCCC----CCCcccccccccHHHH
Q 009940 98 EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSC 144 (522)
Q Consensus 98 l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~~~a 144 (522)
+.+...+..+. +. +...+.+|.|....+ +..|...+.|.++...
T Consensus 55 ~~~l~~~~~~~--~~-~~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 55 LTLVGYYQVDL--FE-SGFETLVYPAVSAQLEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred eEEEEEEEecC--CC-CcEEEEEEEEEEEecccccccccccCcEEeccCCc
Confidence 55555555544 32 678889999888877 5689999999975543
No 124
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=93.70 E-value=0.23 Score=48.63 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=55.4
Q ss_pred HHHhCCCccEEEEcCCCccccCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCCCceEE--ECCEEEEEEeCCC
Q 009940 250 VVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDIC--VGGQRLTVVFSPG 327 (522)
Q Consensus 250 ~~~~~~~i~~IiiTH~H~DHiGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~g~~l~--lgg~~l~vi~tPG 327 (522)
.+.++.+++.++++|.|.||...-....=...+++++.-+..+......+-......+..+++.+ -++.++++..+|.
T Consensus 126 ~~~~~p~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPa 205 (343)
T KOG3798|consen 126 KLEDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPA 205 (343)
T ss_pred hhccCCCCceeccccccccccchHHHHhhhccCccceeehhhhhheecCCCCCceeEeeccchhceecCCcEEEEEEcch
Confidence 34556677799999999999864433321122455555555444433222222344555555433 3677888888885
Q ss_pred CCCCC-------------eEEEeCCCCEEEEccc
Q 009940 328 HTDGH-------------VALLHASTNSLIVGDH 348 (522)
Q Consensus 328 HT~g~-------------i~l~~~~~~vLftGD~ 348 (522)
--.+. -++.-+..+.+|+||+
T Consensus 206 qHw~~R~L~D~Nk~LW~sw~v~g~~nrfffaGDT 239 (343)
T KOG3798|consen 206 QHWGQRGLFDRNKRLWSSWAVIGENNRFFFAGDT 239 (343)
T ss_pred hhhcccccccCCcceeeeeEEecCCceEEecCCC
Confidence 22222 2333344566777776
No 125
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=93.57 E-value=0.099 Score=45.84 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=58.6
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
..||+||+..| . ++.|.||++.++. +|. ...++..++.++.|+.+....
T Consensus 16 ~~lL~~r~~~~--~---------~~~w~lPgG~ve~--~E~------------------~~~aa~REl~EE~g~~~~~~~ 64 (118)
T cd04674 16 GLLVIRRGIEP--G---------RGKLALPGGFIEL--GET------------------WQDAVARELLEETGVAVDPAD 64 (118)
T ss_pred CEEEEEeecCC--C---------CCeEECCceecCC--CCC------------------HHHHHHHHHHHHHCCcccccE
Confidence 36777777654 1 3489999999985 333 136788999999999987655
Q ss_pred ceeecccccCCCCCCCCceeEEEEEeEcCCC------CCCcccccccccHHHH
Q 009940 98 EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSC 144 (522)
Q Consensus 98 l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~------~~~e~~~~~W~~~~~a 144 (522)
+..+.....+. +.+-+.+|.+..+.+ .+.|..+..|+.+...
T Consensus 65 l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 112 (118)
T cd04674 65 IRLFDVRSAPD-----GTLLVFGLLPERRAADLPPFEPTDETTERAVVTAPSE 112 (118)
T ss_pred EEEEEEEecCC-----CeEEEEEEEeccccccCCCCCCCcceeeEEEccCCcc
Confidence 55444433332 344445555543333 4677888888765443
No 126
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=92.90 E-value=0.28 Score=44.56 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=62.1
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
+.||+||.-+|--+ .|-||++.++. ||. -.+++..++.++.||.+..-.
T Consensus 22 ~iLLvrR~~~p~~g-----------~WalPGG~ve~--GEt------------------~eeaa~REl~EETgL~~~~~~ 70 (145)
T COG1051 22 RILLVRRANEPGAG-----------YWALPGGFVEI--GET------------------LEEAARRELKEETGLRVRVLE 70 (145)
T ss_pred EEEEEEecCCCCCC-----------cEeCCCccCCC--CCC------------------HHHHHHHHHHHHhCCccccee
Confidence 99999999888544 59999999987 333 127799999999999954444
Q ss_pred ceeecccccCCCCCCCC-ceeEEEEEeEcCCC-----CCCcccccccccHHHHHH
Q 009940 98 EWKLWKCVEEPEFGPGL-TIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 98 l~~~~~w~~~~~~~~~~-r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~ 146 (522)
+ ++-.=.|. ..+| +.=+.||.+..+.| ++.++....|+...+...
T Consensus 71 ~--~~v~~~~~--rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~ 121 (145)
T COG1051 71 L--LAVFDDPG--RDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPE 121 (145)
T ss_pred E--EEEecCCC--CCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccc
Confidence 3 44333333 1144 33344556666655 334677778887665543
No 127
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=92.39 E-value=0.56 Score=39.93 Aligned_cols=29 Identities=7% Similarity=0.282 Sum_probs=20.8
Q ss_pred CceeEEEEEeEcCCCCCCcccccccccHHH
Q 009940 114 LTIHTVYIMGKLLDGNQILQEGCKWMSTQS 143 (522)
Q Consensus 114 ~r~dT~ff~a~~p~~~~~e~~~~~W~~~~~ 143 (522)
++..-.+|.+.+..++ .+.....|+++++
T Consensus 73 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~ee 101 (118)
T cd03431 73 FRLTLHVYLARLEGDL-LAPDEGRWVPLEE 101 (118)
T ss_pred eEEEEEEEEEEEeCCC-cCccccEEccHHH
Confidence 5788888888876653 3456779998654
No 128
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=91.24 E-value=0.33 Score=43.06 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=60.8
Q ss_pred eehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHH
Q 009940 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (522)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
|.+++|++..++.++|+.|.+- . -|.||++.++. +|+ ...++..+
T Consensus 2 ~~~~~~~~~~~~~~ll~~r~~~------~---------~~~lPgG~ve~--~E~------------------~~~aa~Re 46 (126)
T cd04663 2 KCPAVLRRNGEVLELLVFEHPL------A---------GFQIVKGTVEP--GET------------------PEAAALRE 46 (126)
T ss_pred EEEEEEEeCCceEEEEEEEcCC------C---------cEECCCccCCC--CCC------------------HHHHHHHH
Confidence 4566677665567888876642 2 58999999985 333 13678999
Q ss_pred HHHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEc----CCC-------CCCcccccccccHHHHHH
Q 009940 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL----LDG-------NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 85 ~l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~----p~~-------~~~e~~~~~W~~~~~al~ 146 (522)
+.++.|+...... .....| ++. |. ..+....+++... |+. ++.+..+..|+++.+...
T Consensus 47 l~EEtGl~~~~~~-~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~ 115 (126)
T cd04663 47 LQEESGLPSFLSD-YILHVW-ERR-FY-QKRHFWHLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD 115 (126)
T ss_pred HHHHHCCeeeeee-ecceee-eCC-Ee-eccEEEEEEEEEecCCCcccccCcccCCCCceEEEEEEccccccc
Confidence 9999999862211 112222 222 22 2233334444433 222 455556677999888744
No 129
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=90.67 E-value=0.16 Score=56.59 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=30.6
Q ss_pred CeEEEcCCCCChHHHHHHHHH-----HhCCCccEEEEcCCCccccCCHHHHHH
Q 009940 231 EALIVDPGCRSEFHEELLKVV-----ASLPRKLIVFVTHHHRDHVDGLSIIQK 278 (522)
Q Consensus 231 ~~iLIDtG~~~~~~~~L~~~~-----~~~~~i~~IiiTH~H~DHiGG~~~l~~ 278 (522)
+.||.|||-+.-. +-.+..+ ..+.+.++|++||.|+||.-|+..+.+
T Consensus 472 ~~IlLDCGEgTlg-ql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~ 523 (746)
T KOG2121|consen 472 DSILLDCGEGTLG-QLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQ 523 (746)
T ss_pred ccEEeecCCchHH-HHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHH
Confidence 3599999977531 1111222 112344689999999999999876654
No 130
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=89.66 E-value=0.48 Score=46.99 Aligned_cols=92 Identities=27% Similarity=0.342 Sum_probs=53.3
Q ss_pred CccEEEEcCCCccccCCHHH----HHHhCCCCEEEEcHhHHHHhccCC-----CC---------CCceecCCCceEEECC
Q 009940 256 RKLIVFVTHHHRDHVDGLSI----IQKCNPDAILLAHENTMRRIGKDD-----WS---------LGYTSVSGSEDICVGG 317 (522)
Q Consensus 256 ~i~~IiiTH~H~DHiGG~~~----l~~~~p~a~V~a~~~~~~~l~~~~-----~~---------~~~~~l~~g~~l~lgg 317 (522)
.|..-+|||.|.||+.|+-. +-+.. .-+||+.+.+.+.+++.- |+ .....+++.+...++=
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~ 190 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL 190 (356)
T ss_pred hhhheEeccccccchhceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeee
Confidence 35567999999999998732 22221 347999988888776542 21 1234456666555554
Q ss_pred EEEEEEeCC---CCCCC----CeEEEeCC----CCEEEEccc
Q 009940 318 QRLTVVFSP---GHTDG----HVALLHAS----TNSLIVGDH 348 (522)
Q Consensus 318 ~~l~vi~tP---GHT~g----~i~l~~~~----~~vLftGD~ 348 (522)
..+.+++-| |-.-| +.+++..+ +-+++.||.
T Consensus 191 t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDv 232 (356)
T COG5212 191 TRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDV 232 (356)
T ss_pred eeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCC
Confidence 444454333 22122 23444433 237888986
No 131
>PLN03143 nudix hydrolase; Provisional
Probab=89.41 E-value=0.92 Score=46.09 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=65.9
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
.++|+||.++|-- .. .|-||++.++.-+ +. -.+.|+.|+.|+.|+....+.
T Consensus 144 ~VlLVrQ~R~pvg-~~---------~lE~PAG~lD~~~-ed------------------p~~aA~REL~EETG~~~~a~~ 194 (291)
T PLN03143 144 YAVLTEQVRVPVG-KF---------VLELPAGMLDDDK-GD------------------FVGTAVREVEEETGIKLKLED 194 (291)
T ss_pred EEEEEEeEecCCC-cE---------EEEecccccCCCC-CC------------------HHHHHHHHHHHHHCCccccce
Confidence 4999999998762 22 7999999998522 22 137899999999999876665
Q ss_pred ceeec---------ccccCCCCCCCCceeEEEEEeEcC-------------CC--CCCcccccccccHHHHHHHHHhc
Q 009940 98 EWKLW---------KCVEEPEFGPGLTIHTVYIMGKLL-------------DG--NQILQEGCKWMSTQSCINCLAEV 151 (522)
Q Consensus 98 l~~~~---------~w~~~~~~~~~~r~dT~ff~a~~p-------------~~--~~~e~~~~~W~~~~~al~~l~~~ 151 (522)
+..+. ...+-+- .-+-++ .+|++.-. .+ |..|.-...|++..++..++.+-
T Consensus 195 lv~L~~~~~~~~g~~v~pspG-~~dE~i--~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ 269 (291)
T PLN03143 195 MVDLTAFLDPSTGCRMFPSPG-GCDEEI--SLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADA 269 (291)
T ss_pred EEEeeeccccCcCceEEecCC-ccCCeE--EEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhH
Confidence 55442 1111120 112122 35554322 11 56788889999999988876533
No 132
>PLN02791 Nudix hydrolase homolog
Probab=88.99 E-value=0.95 Score=51.83 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=72.1
Q ss_pred hcCCCCCceeEEeecCCCCCCCccccccccccccCCC-CccccccccCCCCCCceeeeccccccccccchhchHHHHHHH
Q 009940 10 LKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDL-PAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQ 88 (522)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (522)
|-|++++ |+||-||+..=+.-+. +||+ +++-+...+.- .+++..++-++
T Consensus 39 Ifn~~~g-elLLQkRS~~K~~~PG---------~WDiS~gGHv~aGEs~--------------------~eAA~REL~EE 88 (770)
T PLN02791 39 IYSESTQ-ELLLQRRADCKDSWPG---------QWDISSAGHISAGDTS--------------------LLSAQRELEEE 88 (770)
T ss_pred EEECCCC-eEEEEEecCCCCCCCC---------cccCcCCCCCCCCCCH--------------------HHHHHHHHHHH
Confidence 4455545 8999999886666777 9999 57776553322 26799999999
Q ss_pred cCCeeccCcceeeccc---cc--CCCCCCCCceeEEEEEe---EcCCC----CCCcccccccccHHHHHHHHHh
Q 009940 89 LGFGVRDGGEWKLWKC---VE--EPEFGPGLTIHTVYIMG---KLLDG----NQILQEGCKWMSTQSCINCLAE 150 (522)
Q Consensus 89 ~gl~l~~~~l~~~~~w---~~--~~~~~~~~r~dT~ff~a---~~p~~----~~~e~~~~~W~~~~~al~~l~~ 150 (522)
.|+.+..+.+...-.. +. ... ...+-|+-.|++- ..|.. +..|.+..+|++..+..+++..
T Consensus 89 LGI~l~~~~l~~l~~~~~~~~~~~g~-~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~~ 161 (770)
T PLN02791 89 LGIILPKDAFELLFVFLQECVINDGK-FINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALAK 161 (770)
T ss_pred hCCCCChhheeeeeeEEEEeeccCCC-cceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHhc
Confidence 9999766554332221 11 111 1234677677653 23322 4579999999999999988654
No 133
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=88.60 E-value=1.2 Score=34.49 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=32.1
Q ss_pred cCCeEEE-cCCCCChHHHHHHHHHHhCCCccEEEEcCCC-ccccCC
Q 009940 229 QGEALIV-DPGCRSEFHEELLKVVASLPRKLIVFVTHHH-RDHVDG 272 (522)
Q Consensus 229 ~g~~iLI-DtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H-~DHiGG 272 (522)
+.+..|+ ++|.+.+ +.+.+...++.++..||+|+.+ +|++||
T Consensus 20 d~~rYlFGn~gEGtQ--R~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 20 DSRRYLFGNCGEGTQ--RACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CCceEEeccCCcHHH--HHHHHcCCCccccceEEECCCCcccccCC
Confidence 4568899 8987765 4455544556677899999999 999997
No 134
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=84.93 E-value=4.4 Score=40.26 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=48.0
Q ss_pred hhchHHHHHHHcCCeecc---CcceeecccccCCCC-------C--CCCceeEEEEEeEcCCC----CCCcccccccccH
Q 009940 78 IESALNQILEQLGFGVRD---GGEWKLWKCVEEPEF-------G--PGLTIHTVYIMGKLLDG----NQILQEGCKWMST 141 (522)
Q Consensus 78 ~~~~~~~~l~~~gl~l~~---~~l~~~~~w~~~~~~-------~--~~~r~dT~ff~a~~p~~----~~~e~~~~~W~~~ 141 (522)
.+++.+++.++.|+.+.. +.+..+.+..-..+. + -.+-+|.+||......+ +..|....+|+++
T Consensus 118 ~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~ 197 (247)
T PLN02552 118 KNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNR 197 (247)
T ss_pred HHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeH
Confidence 367999999999998543 334433322111100 1 12578888876433333 6789999999999
Q ss_pred HHHHHHHHhc
Q 009940 142 QSCINCLAEV 151 (522)
Q Consensus 142 ~~al~~l~~~ 151 (522)
.+..+++.+-
T Consensus 198 ~el~~~~~~~ 207 (247)
T PLN02552 198 EELKEMMRKE 207 (247)
T ss_pred HHHHHHHhhc
Confidence 9999887643
No 135
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=84.28 E-value=1.7 Score=31.30 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcc
Q 009940 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (522)
Q Consensus 411 ~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (522)
+|+..+.+|+.++.||++.+ .....++.-||..|.+.|.|.
T Consensus 6 ~Il~~L~~~~~~~~el~~~l---------~~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 6 RILKLLSEGPLTVSELAEEL---------GLSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHTTSSEEHHHHHHHH---------TS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCchhhHHHhc---------cccchHHHHHHHHHHHCcCee
Confidence 57888888999999999984 367788999999999999885
No 136
>PHA02943 hypothetical protein; Provisional
Probab=81.80 E-value=6.5 Score=35.82 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 403 KNRRAREAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 403 ~~~~~r~~~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+...+|..+|++.++.|..|..||++.+= .-...+.-||.-|+++|+|++.
T Consensus 7 d~v~~R~~eILE~Lk~G~~TtseIAkaLG---------lS~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 7 DTVHTRMIKTLRLLADGCKTTSRIANKLG---------VSHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHC---------CCHHHHHHHHHHHHHcCceEEE
Confidence 34567888999999888889999999852 3445677889999999999886
No 137
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=80.41 E-value=1.2 Score=38.18 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=48.5
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHH-HHcCCeecc-
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL-EQLGFGVRD- 95 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gl~l~~- 95 (522)
++||.|| |+-.+-++ ||.||....+.... ...+.+.+ +..|+.+..
T Consensus 10 ~~Ll~kR-p~~gll~G---------LwefP~~e~~~~~~----------------------~~~l~~~~~~~~~~~~~~~ 57 (114)
T PF14815_consen 10 RVLLEKR-PEKGLLAG---------LWEFPLIESDEEDD----------------------EEELEEWLEEQLGLSIRSV 57 (114)
T ss_dssp EEEEEE---SSSTTTT----------EE--EEE-SSS-C----------------------HHHHHHHTCCSSS-EEEE-
T ss_pred EEEEEEC-CCCChhhc---------CcccCEeCccCCCC----------------------HHHHHHHHHHHcCCChhhh
Confidence 7776664 43345555 99999988763221 22334333 567776544
Q ss_pred CcceeecccccCCCCCCCCceeEEEEEeEcCCCCCCcccccccccHHH
Q 009940 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGNQILQEGCKWMSTQS 143 (522)
Q Consensus 96 ~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~~~~e~~~~~W~~~~~ 143 (522)
..+..+-|=.| -++.+-.+|.+.+......+..+..|+++++
T Consensus 58 ~~~~~v~H~fS------H~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 99 (114)
T PF14815_consen 58 EPLGTVKHVFS------HRRWTIHVYEVEVSADPPAEPEEGQWVSLEE 99 (114)
T ss_dssp S-SEEEEEE-S------SEEEEEEEEEEEEE-SS----TTEEEEEGGG
T ss_pred eecCcEEEEcc------ceEEEEEEEEEEecCCCCCCCCCcEEEEHHH
Confidence 34555555555 2799999999999998666889999998765
No 138
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=79.89 E-value=1.9 Score=48.01 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=48.3
Q ss_pred cEEEEccCCCCCCCcceEEEecCCeEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccCCHHHHHH
Q 009940 208 NLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQK 278 (522)
Q Consensus 208 N~~~i~~~~~~~g~~~~~~l~~g~~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiGG~~~l~~ 278 (522)
.||++.+. -+....|-++|-.|||+.|.... ..+.++++.+.+++.|++||--.|..+|+..+.+
T Consensus 39 CcYIfpGg----~gdaALFavnGf~iLv~GgserK--S~fwklVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 39 CCYIFPGG----RGDAALFAVNGFNILVNGGSERK--SCFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred eEEECCCC----CCcceeEeecceEEeecCCcccc--cchHHHHHHHhhhhhhhhcccccCccccchHHHH
Confidence 57777653 23345666777789999887632 2456777788889999999999999999877654
No 139
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=77.70 E-value=3.2 Score=32.00 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 411 ~il~~l~~--g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+|++.+++ ++.+..||++.+ .+....++.+|+.|+++|+|++.
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~---------gls~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADAL---------GLSIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHH---------TS-HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHh---------CCCHHHHHHHHHHHHHCCCEEEe
Confidence 45555543 677899999883 46778899999999999999864
No 140
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=76.20 E-value=10 Score=34.93 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=66.7
Q ss_pred eeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeeccCc
Q 009940 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~~~ 97 (522)
.+||+||.. ..|.||+++++. +|. ..+++..++.++.|+.. +.
T Consensus 36 ~~LL~~~~~---------------~~~elPgG~vE~--gEt------------------~~eaA~REl~EETG~~~--~~ 78 (156)
T TIGR02705 36 QWLLTEHKR---------------RGLEFPGGKVEP--GET------------------SKEAAIREVMEETGAIV--KE 78 (156)
T ss_pred EEEEEEEcC---------------CcEECCceecCC--CCC------------------HHHHHHHHHHHHhCcEe--ee
Confidence 899999861 159999999875 333 13678999999999964 56
Q ss_pred ceeecccccCCCCCCCCceeEEEEEeEcCCC-CCCcccccc-cccHHHHHHHHHhcCCCCCc
Q 009940 98 EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-NQILQEGCK-WMSTQSCINCLAEVKPSTDR 157 (522)
Q Consensus 98 l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-~~~e~~~~~-W~~~~~al~~l~~~~~~~~r 157 (522)
+..+..+...+ +. ..+=...|+|..... ...|..+.. +++..+..+.+..=+.-++.
T Consensus 79 ~~~lg~~~~~~--~~-~~~~~~vf~A~~~~~~~~~e~~E~~~~~~~~~~~~~~~~g~~~s~~ 137 (156)
T TIGR02705 79 LHYIGQYEVEG--ES-TDFVKDVYFAEVSALESKDDYLETKGPVLLQEIPDIIKADPRFSFI 137 (156)
T ss_pred eEEEEEEEecC--CC-cEEEEEEEEEEEeccccCCCceeeEeEEEHHHHHHHHhcCCcccEE
Confidence 66666666655 33 455566666776644 334545555 68888888776554433444
No 141
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=70.42 E-value=9 Score=29.78 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHc-----C-CCCHHHHHHHHhcCCCCcchhHH-HHHHHHHHHHHHHCCCccce
Q 009940 407 AREAAILQAIEN-----G-VETLFDIVANVYSEVPRSFWIPA-ASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 407 ~r~~~il~~l~~-----g-~~T~~ei~~~~y~~~~~~~~~~a-~~~v~ahL~~L~~~g~i~~~ 462 (522)
+|.++|++.|.+ | +-|..||.+.+- +. ..++..||..|++.|.|.+.
T Consensus 6 ~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g---------~~S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 6 ERQKEVLEFIREYIEENGYPPTVREIAEALG---------LKSTSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSS---HHHHHHHHT---------SSSHHHHHHHHHHHHHTTSEEEG
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC---------CCChHHHHHHHHHHHHCcCccCC
Confidence 445555555543 3 339999998842 23 46788999999999999876
No 142
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=70.32 E-value=9.6 Score=28.83 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=35.3
Q ss_pred HHHHHH-HcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 411 AILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 411 ~il~~l-~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+|++.+ ..++.|+.||.+.+ .....++.-||..|++.|.|+..
T Consensus 14 ~Il~~L~~~~~~t~~ela~~l---------~~~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 14 RILRLLASNGPMTVSELAEEL---------GISQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHHHHHCSTBEHHHHHHHH---------TS-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHH---------CCCHHHHHHHHHHHHHCCCeEEe
Confidence 577777 77888999999985 25667899999999999999765
No 143
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.27 E-value=7.5 Score=35.18 Aligned_cols=48 Identities=17% Similarity=-0.030 Sum_probs=30.9
Q ss_pred ccchhhHHHHHH-HhhhhhhhhhhccchhHHHhHHh----hhchhHHHHHHhh
Q 009940 471 TCGLHFLLRWAW-TYLRFQVRYQKLSMSKLLIGGAA----VAGFAVFFSIRNK 518 (522)
Q Consensus 471 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 518 (522)
+=.+.+.+|-++ .|.+|+++++....|..-...+. |+||.-.+..+++
T Consensus 26 YG~v~~~vraIy~~Y~GWfDgnP~~L~pl~p~~~A~~~v~l~GG~d~vl~~A~ 78 (141)
T PF14863_consen 26 YGTVSWNVRAIYQGYLGWFDGNPANLNPLPPEEEAKRYVELAGGADKVLERAQ 78 (141)
T ss_dssp SS-HHHHHHHHHHHHC-S--S-GGGTS---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCChhhhHHHHHHHcCCccCCCccccCCCChHHHHHHHHHHcCCHHHHHHHHH
Confidence 445688999998 99999999999877765555444 8899877777665
No 144
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=66.65 E-value=16 Score=27.99 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcc
Q 009940 408 REAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (522)
Q Consensus 408 r~~~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (522)
--..|++.+ +|+.|+.+|++.+...++... --+...+...+..|.+.|.|+
T Consensus 18 ~a~~Iw~~~-~g~~t~~ei~~~l~~~y~~~~-~~~~~dv~~fl~~L~~~glIe 68 (68)
T PF05402_consen 18 TAAFIWELL-DGPRTVEEIVDALAEEYDVDP-EEAEEDVEEFLEQLREKGLIE 68 (68)
T ss_dssp HHHHHHHH---SSS-HHHHHHHHHHHTT--H-HHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHc-cCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHCcCcC
Confidence 344688888 467899999999977764322 245778999999999999874
No 145
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=65.78 E-value=14 Score=31.88 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=41.9
Q ss_pred HHHHHHHHH-HcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceeccchh
Q 009940 408 REAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSILKF 468 (522)
Q Consensus 408 r~~~il~~l-~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~ 468 (522)
.+.+|++.+ +.|+.|+.||.+.+-...+ ++..+|...|.+|.+.|.|.+......|
T Consensus 4 ~E~~IM~~lW~~~~~t~~eI~~~l~~~~~-----~~~sTv~t~L~rL~~Kg~l~~~~~gr~~ 60 (115)
T PF03965_consen 4 LELEIMEILWESGEATVREIHEALPEERS-----WAYSTVQTLLNRLVEKGFLTREKIGRAY 60 (115)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHCTTSS-------HHHHHHHHHHHHHTTSEEEEEETTCE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhccc-----cchhHHHHHHHHHHhCCceeEeecCCce
Confidence 456677776 4567899999999866622 4778999999999999999998544333
No 146
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=65.02 E-value=12 Score=28.16 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=36.4
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceec
Q 009940 408 REAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFS 464 (522)
Q Consensus 408 r~~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (522)
|.++|++.+.+ +..|..|++..+ .....+++..|.+|+++|++.+.-+
T Consensus 1 R~~~Il~~l~~~~~~s~~ela~~~---------~VS~~TiRRDl~~L~~~g~i~r~~G 49 (57)
T PF08220_consen 1 RQQQILELLKEKGKVSVKELAEEF---------GVSEMTIRRDLNKLEKQGLIKRTHG 49 (57)
T ss_pred CHHHHHHHHHHcCCEEHHHHHHHH---------CcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 34567777764 556999999873 2455789999999999999987643
No 147
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=64.77 E-value=17 Score=32.07 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=49.0
Q ss_pred HHHHHHHHH-HcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceeccchhhhccc
Q 009940 408 REAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSILKFRKTCG 473 (522)
Q Consensus 408 r~~~il~~l-~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~ 473 (522)
.+.+|++.+ ..|+.|+.||++.+-.+.+ ++..+|..-|.+|.+.|.|.+..+.+.|.++-.
T Consensus 7 aE~eVM~ilW~~~~~t~~eI~~~l~~~~e-----ws~sTV~TLl~RL~KKg~l~~~kdgr~~~y~pL 68 (123)
T COG3682 7 AEWEVMEILWSRGPATVREIIEELPADRE-----WSYSTVKTLLNRLVKKGLLTRKKDGRAFRYSPL 68 (123)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHhhccc-----ccHHHHHHHHHHHHhccchhhhhcCCeeeeecc
Confidence 456778776 6788999999999877733 567888899999999999999987777777543
No 148
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=64.68 E-value=14 Score=29.43 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce---eccchhhhccc
Q 009940 409 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE---FSILKFRKTCG 473 (522)
Q Consensus 409 ~~~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~---~~~~~~~~~~~ 473 (522)
.+.|+..+..+-.|++|+.... .....++.-+|..|.++|.|.+. ++...++-+|-
T Consensus 7 ~~~IL~~ls~~c~TLeeL~ekT---------gi~k~~LlV~LsrL~k~GiI~Rkw~~~~gkk~R~Ycl 65 (72)
T PF05584_consen 7 TQKILIILSKRCCTLEELEEKT---------GISKNTLLVYLSRLAKRGIIERKWRKFGGKKYREYCL 65 (72)
T ss_pred HHHHHHHHHhccCCHHHHHHHH---------CCCHHHHHHHHHHHHHCCCeeeeeEEecCeEEEEEEe
Confidence 3457777776667999988762 24456778899999999999998 55567777775
No 149
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=63.39 E-value=18 Score=28.23 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=38.5
Q ss_pred HHHHHHHHHc-CC--CCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceecc-chhh
Q 009940 409 EAAILQAIEN-GV--ETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSI-LKFR 469 (522)
Q Consensus 409 ~~~il~~l~~-g~--~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~-~~~~ 469 (522)
.++|++.+.+ |+ .|+.||...+ .+....+..||..|+++|.|.+..+. ..|.
T Consensus 8 ~~~IL~~L~~~g~~~~ta~eLa~~l---------gl~~~~v~r~L~~L~~~G~V~~~~~~~~~W~ 63 (68)
T smart00550 8 EEKILEFLENSGDETSTALQLAKNL---------GLPKKEVNRVLYSLEKKGKVCKQGGTPPLWK 63 (68)
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHH---------CCCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 4567777764 45 7999998884 35566899999999999999876433 4554
No 150
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=62.17 E-value=29 Score=29.63 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=58.4
Q ss_pred ceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchh-chHHHHHHHcCCeecc
Q 009940 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIE-SALNQILEQLGFGVRD 95 (522)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~gl~l~~ 95 (522)
-++|+.+++.++ ..|.+|++.++.-+.- .. ++..|+.++.|+.+..
T Consensus 24 ~~vl~~~~~~~~-------------~~~~~PgG~ve~~e~~--------------------~~~aa~RE~~EEtGl~~~~ 70 (161)
T COG0494 24 GEVLLAQRRDDG-------------GLWELPGGKVEPGEEL--------------------PEEAAARELEEETGLRVKD 70 (161)
T ss_pred CEEeEEEccccC-------------CceecCCcccCCCCch--------------------HHHHHHHHHHHHhCCeeee
Confidence 467777777666 3899999988643321 35 8999999999999886
Q ss_pred CcceeecccccCCCCCCC--CceeEEEEEeEcCCC-------C---CCcccccccccHHHHHHH
Q 009940 96 GGEWKLWKCVEEPEFGPG--LTIHTVYIMGKLLDG-------N---QILQEGCKWMSTQSCINC 147 (522)
Q Consensus 96 ~~l~~~~~w~~~~~~~~~--~r~dT~ff~a~~p~~-------~---~~e~~~~~W~~~~~al~~ 147 (522)
..+...-.+......... ..+.-.++....... + ..|.....|+........
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 134 (161)
T COG0494 71 ERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAAL 134 (161)
T ss_pred ecceeeeeccCcccCcccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccc
Confidence 333444444433311111 133333333332111 1 146788888887776664
No 151
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=60.03 E-value=30 Score=24.50 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=32.1
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcc
Q 009940 409 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (522)
Q Consensus 409 ~~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (522)
..+|+..+.+ +..|..|++..+ .+...++..|+..|++.|.|+
T Consensus 5 ~~~Il~~l~~~~~~t~~ela~~~---------~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLRENPRITQKELAEKL---------GISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHCTTS-HHHHHHHH---------TS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh---------CCCHHHHHHHHHHHHHCcCcC
Confidence 4567777765 446999999884 366778999999999999874
No 152
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=58.01 E-value=27 Score=28.26 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcc
Q 009940 409 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (522)
Q Consensus 409 ~~~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (522)
-..|.+.+. |+.|+.||++.+-..++. .-.+...+.+.|+.|.+.|.|.
T Consensus 33 g~~Iw~lld-g~~tv~eI~~~L~~~Y~~--~e~~~~dV~~fL~~L~~~gli~ 81 (81)
T TIGR03859 33 AGEILELCD-GKRSLAEIIQELAQRFPA--AEEIEDDVIAFLAVARAKHWLE 81 (81)
T ss_pred HHHHHHHcc-CCCcHHHHHHHHHHHcCC--hhhHHHHHHHHHHHHHHCcCcC
Confidence 345777775 567999999999776665 2356788999999999998763
No 153
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=57.37 E-value=18 Score=27.89 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHHHHHH-HcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceecc
Q 009940 407 AREAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSI 465 (522)
Q Consensus 407 ~r~~~il~~l-~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (522)
+.+.+|+..+ ..|+.|+.||+..+ .....++...|+.|+++|.|.+..+.
T Consensus 8 ~~E~~vy~~Ll~~~~~t~~eIa~~l---------~i~~~~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 8 ENEAKVYLALLKNGPATAEEIAEEL---------GISRSTVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHHHHHHHHHHHHCHEEHHHHHHHH---------TSSHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH---------CcCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 3455666665 57888999999884 34567888999999999999888533
No 154
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=51.67 E-value=20 Score=28.19 Aligned_cols=53 Identities=13% Similarity=0.287 Sum_probs=40.5
Q ss_pred HHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceecc
Q 009940 412 ILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSI 465 (522)
Q Consensus 412 il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (522)
||..+..++.+..||.+.+-...+. .|.....++-..|.+|+++|.|......
T Consensus 1 iL~~L~~~~~~Gyei~~~l~~~~~~-~~~i~~g~lY~~L~~Le~~gli~~~~~~ 53 (75)
T PF03551_consen 1 ILGLLSEGPMHGYEIKQELEERTGG-FWKISPGSLYPALKRLEEEGLIESRWEE 53 (75)
T ss_dssp HHHHHHHS-EEHHHHHHHHHHCSTT-TEETTHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred ChhhhccCCCcHHHHHHHHHHHhCC-CcccChhHHHHHHHHHHhCCCEEEeeec
Confidence 4666777888999999998665443 3456778899999999999999888444
No 155
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=51.43 E-value=23 Score=35.31 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcccee
Q 009940 406 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEF 463 (522)
Q Consensus 406 ~~r~~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (522)
.+|.++|++.+++ |..++.|+++.+ ..-..+++.+|..|+++|++.+..
T Consensus 4 ~eR~~~Il~~L~~~~~v~v~eLa~~l---------~VS~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 4 RQRQAAILEYLQKQGKTSVEELAQYF---------DTTGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHHHHHcCCEEHHHHHHHH---------CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4688889999975 567999999883 244578999999999999998874
No 156
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=49.73 E-value=1.1e+02 Score=26.09 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=42.3
Q ss_pred EEEEc-----CCCcccc-CCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCC
Q 009940 259 IVFVT-----HHHRDHV-DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGH 328 (522)
Q Consensus 259 ~IiiT-----H~H~DHi-GG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~g~~l~l----gg~~l~vi~tPGH 328 (522)
..++| |.|.++. .....+++..+...+++++.+++.+. +.+|+.+.+ |...+.+..+++=
T Consensus 5 ~~l~t~~~~~~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~~lg----------i~~Gd~V~v~~~~G~~~~~v~~~~~i 74 (122)
T cd02791 5 LWLNTGRVRDQWHTMTRTGRVPRLNAHVPEPYVEIHPEDAARLG----------LKEGDLVRVTSRRGEVVLRVRVTDRV 74 (122)
T ss_pred EEEEcccchhhhccCCccCChHHHHhhCCCCEEEECHHHHHHcC----------CCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 45555 4466653 34566777777788999999988764 346776655 2244556666665
Q ss_pred CCCCeEE
Q 009940 329 TDGHVAL 335 (522)
Q Consensus 329 T~g~i~l 335 (522)
.+|.+.+
T Consensus 75 ~~g~v~~ 81 (122)
T cd02791 75 RPGEVFV 81 (122)
T ss_pred CCCeEEE
Confidence 5565554
No 157
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=49.45 E-value=26 Score=34.14 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHHHH-cCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 410 AAILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 410 ~~il~~l~-~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+.|+..+. .|+.|+.||.+.+ ......++.||+.|+.+|.|...
T Consensus 14 ~~il~lL~~~g~~sa~elA~~L---------gis~~avR~HL~~Le~~Glv~~~ 58 (218)
T COG2345 14 ERILELLKKSGPVSADELAEEL---------GISPMAVRRHLDDLEAEGLVEVE 58 (218)
T ss_pred HHHHHHHhccCCccHHHHHHHh---------CCCHHHHHHHHHHHHhCcceeee
Confidence 44666665 6888999999884 34556789999999999999877
No 158
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=48.95 E-value=41 Score=29.82 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=38.2
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceecc
Q 009940 409 EAAILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSI 465 (522)
Q Consensus 409 ~~~il~~l-~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (522)
+.+|++.+ ..|+.|+.||.+.+-... .++..++...|.+|.+.|.|.+....
T Consensus 6 E~~VM~vlW~~~~~t~~eI~~~l~~~~-----~~~~tTv~T~L~rL~~KG~v~~~k~g 58 (130)
T TIGR02698 6 EWEVMRVVWTLGETTSRDIIRILAEKK-----DWSDSTIKTLLGRLVDKGCLTTEKEG 58 (130)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhcc-----CCcHHHHHHHHHHHHHCCceeeecCC
Confidence 44566666 567789999998864332 25567899999999999999876333
No 159
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=45.47 E-value=1.4e+02 Score=25.17 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=36.4
Q ss_pred CHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCCCceEEEC----CEEEEEEeCCCCCCCCeEEE
Q 009940 272 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVG----GQRLTVVFSPGHTDGHVALL 336 (522)
Q Consensus 272 G~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~g~~l~lg----g~~l~vi~tPGHT~g~i~l~ 336 (522)
....+++..+...+++++.+++.+. +.+|+.+.+- ...+.+.-+++-.+|.+.+.
T Consensus 24 ~~~~l~~~~~~~~v~inp~dA~~lg----------i~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~ 82 (120)
T cd00508 24 RSPRLAALAPEPFVEIHPEDAARLG----------IKDGDLVRVSSRRGSVVVRARVTDRVRPGTVFMP 82 (120)
T ss_pred ccHHHHhhCCCCEEEECHHHHHHcC----------CCCCCEEEEEeCCEEEEEEEEECCCcCCCEEEEe
Confidence 4556666667788999999988764 3467766652 24455666677666766543
No 160
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.60 E-value=1.1e+02 Score=27.17 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceeccchhhh
Q 009940 406 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSILKFRK 470 (522)
Q Consensus 406 ~~r~~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~ 470 (522)
.+...+|++.+++ |..|..|++... .+...++..|+..|...|.|-.....+.|..
T Consensus 11 ~eLk~rIvElVRe~GRiTi~ql~~~T---------GasR~Tvk~~lreLVa~G~l~~~G~~GvF~s 67 (127)
T PF06163_consen 11 EELKARIVELVREHGRITIKQLVAKT---------GASRNTVKRYLRELVARGDLYRHGRSGVFPS 67 (127)
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHH---------CCCHHHHHHHHHHHHHcCCeEeCCCcccccc
Confidence 4455678888864 677999998873 3566789999999999999988755466655
No 161
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=43.65 E-value=57 Score=28.00 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCCcEEEcCCCCCcCC
Q 009940 368 YFQSTYKFLELSPHALIPMHGRVNLW 393 (522)
Q Consensus 368 ~~~SL~~l~~l~~~~ivPgHG~~~~~ 393 (522)
-.++++.+..+++++++-|.|.....
T Consensus 41 ~~e~l~~l~~~~peiliiGTG~~~~~ 66 (109)
T cd05560 41 TAAHFEALLALQPEVILLGTGERQRF 66 (109)
T ss_pred CHHHHHHHHhcCCCEEEEecCCCCCc
Confidence 34566777788899999999987543
No 162
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.44 E-value=50 Score=28.07 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 411 ~il~~l~~--g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
.|++.+.+ ++.|++||.+.+-...+. ....++...|+.|.+.|.|.+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~----i~~~TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPS----ISLATVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 35666543 457999999998766543 4457888999999999999876
No 163
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=43.30 E-value=56 Score=26.27 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 406 RAREAAILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 406 ~~r~~~il~~l~~--g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
.+|..+|++.+.+ ++.|+.||+..+ .....++..++..|++.|.+.+.
T Consensus 4 ~~r~~~Il~~l~~~~~~~t~~~ia~~l---------~i~~~tv~r~l~~L~~~g~l~~~ 53 (91)
T smart00346 4 LERGLAVLRALAEEPGGLTLAELAERL---------GLSKSTAHRLLNTLQELGYVEQD 53 (91)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHh---------CCCHHHHHHHHHHHHHCCCeeec
Confidence 3466678888765 467999999986 24567889999999999999875
No 164
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=42.53 E-value=51 Score=25.57 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=32.5
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcccee
Q 009940 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEF 463 (522)
Q Consensus 410 ~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (522)
.+|++.+++ |..|+.||...+ ......+.+.|+.|++.|+|.+..
T Consensus 3 ~~i~~~l~~~~~~S~~eLa~~~---------~~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 3 QEIRDYLRERGRVSLAELAREF---------GISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHHHS-SEEHHHHHHHT---------T--HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHH---------CcCHHHHHHHHHHHHHCCcEEEec
Confidence 356676654 456999998873 355667889999999999998773
No 165
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=41.86 E-value=1.7e+02 Score=24.79 Aligned_cols=55 Identities=9% Similarity=0.196 Sum_probs=36.4
Q ss_pred CHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCCCCCCeEEE
Q 009940 272 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALL 336 (522)
Q Consensus 272 G~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~g~~l~l----gg~~l~vi~tPGHT~g~i~l~ 336 (522)
....+++..|...+++++.+++.+. +++|+.+.+ |...+.+.-+++=-+|.+.+.
T Consensus 24 ~~~~l~~~~~~~~v~i~p~dA~~lg----------i~~Gd~V~v~s~~G~~~~~v~v~~~i~~g~v~~~ 82 (122)
T cd02792 24 NSPYLAELQPEMFVEISPELAAERG----------IKNGDMVWVSSPRGKIKVKALVTDRVKPHEVGIP 82 (122)
T ss_pred CCHHHHhhCCCcEEEECHHHHHHcC----------CCCCCEEEEEcCCceEEEEEEECCCcCCCEEEEe
Confidence 4567777777888999999988764 346776665 224455666666556655543
No 166
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=41.63 E-value=94 Score=25.01 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceeccchhh--hccchhhHHHHHH-Hhhhh
Q 009940 419 GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSILKFR--KTCGLHFLLRWAW-TYLRF 487 (522)
Q Consensus 419 g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~ 487 (522)
+..+..+|.+.+ .+...++..||..|++.|.|.........+ -...+.-..|-+. .|..+
T Consensus 13 ~~~~f~~L~~~l---------~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~~~ 75 (80)
T PF13601_consen 13 EEATFSELKEEL---------GLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYVAA 75 (80)
T ss_dssp SEEEHHHHHHHT---------T--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh---------CcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHHHH
Confidence 445677766652 367789999999999999998874433222 2456666666554 55433
No 167
>KOG3904 consensus Predicted hydrolase RP2 (NUDIX/MutT superfamily) [Function unknown]
Probab=37.88 E-value=4.8 Score=38.22 Aligned_cols=66 Identities=12% Similarity=0.006 Sum_probs=53.4
Q ss_pred chHHHHHHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC-----CCCcccccccccHHHHHHH
Q 009940 80 SALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (522)
Q Consensus 80 ~~~~~~l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-----~~~e~~~~~W~~~~~al~~ 147 (522)
+-+-++|....+.-..=.+.-|+=|.+|. .-++|++|.||+..+--- ..+|.-.+.|.||-+.+.-
T Consensus 74 ~~fl~l~r~~~v~P~~w~l~ewsiw~sps--t~~~r~~Tv~fit~l~~~~h~l~ep~EVp~~~w~sPl~~ls~ 144 (209)
T KOG3904|consen 74 SQFLELCRGLEVYPDEWSLHEWSIWRSPS--TDDKRPETVFFITKLDKFPHLLSEPSEVPKKIWLSPLESLSP 144 (209)
T ss_pred HHHhhcCCccccCCCccccceeEEEeccc--cccccchhHHHHHHHHhhhHhhcccccCCcccccCcccccch
Confidence 45677777777766666788899999998 668999999999887655 6789999999999877653
No 168
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=35.99 E-value=75 Score=23.00 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 407 AREAAILQAIENG--VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 407 ~r~~~il~~l~~g--~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+|.-+|++.+.+. +.|+.||++.+ .+...++..+|.-|++.|.+.+.
T Consensus 3 ~ral~iL~~l~~~~~~~t~~eia~~~---------gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 3 ERALRILEALAESGGPLTLSEIARAL---------GLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHHHHCHHCTBSCEEHHHHHHHH---------TS-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHH---------CcCHHHHHHHHHHHHHCcCeecC
Confidence 4566788888753 34899999984 36678889999999999998753
No 169
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=35.48 E-value=66 Score=23.36 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=30.6
Q ss_pred HHHHHHHHH-Hc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCC
Q 009940 408 REAAILQAI-EN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQN 457 (522)
Q Consensus 408 r~~~il~~l-~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g 457 (522)
|..+|+..+ +. ++.|..||++.+. .-..++..+++.|.+.|
T Consensus 1 R~~~il~~L~~~~~~it~~eLa~~l~---------vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 1 RQKQILKLLLESKEPITAKELAEELG---------VSRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHHHHTTTSBEHHHHHHHCT---------S-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCcCHHHHHHHhC---------CCHHHHHHHHHHHHHCC
Confidence 455677777 33 3479999998843 56678999999999999
No 170
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=35.30 E-value=99 Score=28.05 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=59.8
Q ss_pred CceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHHcCCeecc
Q 009940 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (522)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~l~~ 95 (522)
.+||||+--+.+|+ .|-+|.+-.++.+... ++|+.+.+++.|.+-..
T Consensus 23 ~ieVLlvsSs~~~~-------------~wi~PKGGwE~dE~~~--------------------eAA~REt~EEAGv~G~l 69 (145)
T KOG2839|consen 23 KIEVLLVSSSKKPH-------------RWIVPKGGWEPDESVE--------------------EAALRETWEEAGVKGKL 69 (145)
T ss_pred ceEEEEEecCCCCC-------------CccCCCCCCCCCCCHH--------------------HHHHHHHHHHhCceeee
Confidence 47999998877553 7888877665544444 78999999999997443
Q ss_pred Cc-ceeecccccCCCCCCCCceeEEEEEeEcCCC------CCCcccccccccHHHHHHHHH
Q 009940 96 GG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLA 149 (522)
Q Consensus 96 ~~-l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~------~~~e~~~~~W~~~~~al~~l~ 149 (522)
.. +--|...-... . .-..+|.-|+-..-+. -..|.-.-+|++..+|+....
T Consensus 70 ~~~~~g~~~~~~~~--~-~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~ 127 (145)
T KOG2839|consen 70 GRLLGGFEDFLSKK--H-RTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ 127 (145)
T ss_pred eccccchhhccChh--h-cccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh
Confidence 33 11122111111 0 1124555554332222 224477889999999998755
No 171
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=34.71 E-value=56 Score=33.10 Aligned_cols=136 Identities=16% Similarity=0.152 Sum_probs=85.1
Q ss_pred ehhhhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCC--ceeeec-cccccccccchhchH
Q 009940 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEP--TISIQG-SEKINLGKFDIESAL 82 (522)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~ 82 (522)
++.|+-|-+.. |..|+||-+||-+..+-...+= =-..+++..+-....| ||.++- +..+|=-.=+.+-+-
T Consensus 232 vt~iL~n~srk-~LVlvqqfRpaVy~G~~~~~~~------g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~ 304 (405)
T KOG4432|consen 232 VTCILVNMSRK-ELVLVQQFRPAVYVGKNRFLKE------GIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAA 304 (405)
T ss_pred eEEEEEeccch-heehhhhcCcceeecceeeccc------CCCCcccccccccCCccceeeeeeecccCCCCcccHHHHH
Confidence 34566677755 9999999999987665222110 0112222222222245 555543 334443334556688
Q ss_pred HHHHHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeE--cC---C-C---CCCcccccccccHHHHHHHHHh
Q 009940 83 NQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGK--LL---D-G---NQILQEGCKWMSTQSCINCLAE 150 (522)
Q Consensus 83 ~~~l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~--~p---~-~---~~~e~~~~~W~~~~~al~~l~~ 150 (522)
.+..++.|..|..+.+..-++++.-- |..--=-|-|++-. +- . | ++.|--+..=+|-++|-++...
T Consensus 305 ~e~veecGYdlp~~~~k~va~y~sGV--G~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~~q 379 (405)
T KOG4432|consen 305 RESVEECGYDLPEDSFKLVAKYISGV--GQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLYRQ 379 (405)
T ss_pred HHHHHHhCCCCCHHHHhhhheeeccc--CCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHHhc
Confidence 89999999999999999999999977 76656678898632 11 1 1 5566666777777776665543
No 172
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=33.45 E-value=2.6e+02 Score=23.55 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=35.4
Q ss_pred HHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCCCCCCeEE
Q 009940 273 LSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (522)
Q Consensus 273 ~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~g~~l~l----gg~~l~vi~tPGHT~g~i~l 335 (522)
...+.+..|...+++++.+++.+. +++|+.+.+ |...+++.-+++--+|.+.+
T Consensus 21 ~~~l~~~~~~~~v~i~p~dA~~lg----------i~~Gd~V~v~s~~G~~~~~v~~~~~i~~g~v~~ 77 (116)
T cd02786 21 LPELRAKEGEPTLLIHPADAAARG----------IADGDLVVVFNDRGSVTLRAKVTDDVPPGVVVA 77 (116)
T ss_pred CHHHHhhCCCCEEEECHHHHHHcC----------CCCCCEEEEEcCCeEEEEEEEECCCCCCCEEEe
Confidence 355666667788999999988764 346666655 33456666777766676644
No 173
>PRK05638 threonine synthase; Validated
Probab=32.41 E-value=66 Score=34.73 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHhcC---CC--c--EEEcCCCCCcC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCC
Q 009940 364 NMTDYFQSTYKFLEL---SP--H--ALIPMHGRVNL--WPKHMLCGYLKNRRAREAAILQAIENGVETLFDIVANVYSEV 434 (522)
Q Consensus 364 ~~~~~~~SL~~l~~l---~~--~--~ivPgHG~~~~--~~~~~i~~~l~~~~~r~~~il~~l~~g~~T~~ei~~~~y~~~ 434 (522)
.-..-+..+.++.+. .. . ++++|||.-.. ..++.+. . ......|+..+.+++.+..||.+.+=..
T Consensus 324 ssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~~~~~~~~~~---~--~~~r~~IL~~L~~~~~~~~el~~~l~~~- 397 (442)
T PRK05638 324 SSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGYGEGGREKFT---I--GGTKLEILKILSEREMYGYEIWKALGKP- 397 (442)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCchhhhc---c--cchHHHHHHHHhhCCccHHHHHHHHccc-
Confidence 344455555555442 22 2 47999997542 2222221 1 1223468888888888999999876422
Q ss_pred CCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 435 PRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 435 ~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
....++..||..|++.|.|...
T Consensus 398 ------~s~~~v~~hL~~Le~~GLV~~~ 419 (442)
T PRK05638 398 ------LKYQAVYQHIKELEELGLIEEA 419 (442)
T ss_pred ------CCcchHHHHHHHHHHCCCEEEe
Confidence 2345788999999999999764
No 174
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=31.78 E-value=1.1e+02 Score=26.76 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHH-cCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceecc
Q 009940 411 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSI 465 (522)
Q Consensus 411 ~il~~l~-~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~ 465 (522)
+|+..+. .++.++-||++.+ .+...++..||..|.+.|.|......
T Consensus 20 ~IL~~L~~~~~~~v~ela~~l---------~lsqstvS~HL~~L~~AGLV~~~r~G 66 (117)
T PRK10141 20 GIVLLLRESGELCVCDLCTAL---------DQSQPKISRHLALLRESGLLLDRKQG 66 (117)
T ss_pred HHHHHHHHcCCcCHHHHHHHH---------CcCHHHHHHHHHHHHHCCceEEEEEc
Confidence 4666665 4677889988763 24556789999999999999777333
No 175
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=31.12 E-value=1.4e+02 Score=21.94 Aligned_cols=47 Identities=17% Similarity=0.083 Sum_probs=33.7
Q ss_pred HHHHHHHc-CC--CCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceeccc
Q 009940 411 AILQAIEN-GV--ETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSIL 466 (522)
Q Consensus 411 ~il~~l~~-g~--~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~ 466 (522)
.++..+.. ++ .|+.||++.+. ....++...+..|++.|.|.+..+..
T Consensus 9 ~vL~~l~~~~~~~~t~~~la~~l~---------~~~~~vs~~v~~L~~~Glv~r~~~~~ 58 (62)
T PF12802_consen 9 RVLMALARHPGEELTQSELAERLG---------ISKSTVSRIVKRLEKKGLVERERDPG 58 (62)
T ss_dssp HHHHHHHHSTTSGEEHHHHHHHHT---------S-HHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCCCEEEeCCCC
Confidence 45555543 33 58999998843 56678889999999999998885543
No 176
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=30.85 E-value=71 Score=31.98 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 409 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 409 ~~~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
-++++-++.+||+|.+||-..+- .....+..|+.+|.+.|.|...
T Consensus 15 Rk~lLllL~egPkti~EI~~~l~---------vs~~ai~pqiKkL~~~~LV~~~ 59 (260)
T COG4742 15 RKDLLLLLKEGPKTIEEIKNELN---------VSSSAILPQIKKLKDKGLVVQE 59 (260)
T ss_pred HHHHHHHHHhCCCCHHHHHHHhC---------CCcHHHHHHHHHHhhCCCEEec
Confidence 35688889899999999988742 3445688899999999999887
No 177
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=30.76 E-value=97 Score=30.44 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=62.9
Q ss_pred hhcCCCCCceeEEeecCCCCCCCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHHHHHH
Q 009940 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQ 88 (522)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (522)
++...++++=.||.||++-..=..+ -=-||+++-+..+... ...|+.|-.|+
T Consensus 50 L~~~~~~~l~vLltkRSr~LrshsG---------ev~fPGG~~d~~D~s~-------------------~~tAlREt~EE 101 (246)
T KOG3069|consen 50 LVQVGSGELSVLLTKRSRTLRSHSG---------EVCFPGGRRDPHDKSD-------------------IQTALRETEEE 101 (246)
T ss_pred EEEcCCCceEEEEEeccccccccCC---------ceeCCCCcCCccccch-------------------HHHHHHHHHHH
Confidence 3444566778888888887764443 2346666655544433 46799999999
Q ss_pred cCCeeccCcceeecccccCCCCCCCCceeEEEEEeEc------CCC--CCCcccccccccHHHHHH
Q 009940 89 LGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL------LDG--NQILQEGCKWMSTQSCIN 146 (522)
Q Consensus 89 ~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~------p~~--~~~e~~~~~W~~~~~al~ 146 (522)
.|+.. -.+--|.+-++|..++-+.-.=.|+-+ |.. +.+|..+.+|+.-.+-+.
T Consensus 102 IGl~~-----~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 102 IGLDP-----ELVDVLGALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred hCCCH-----HHhhhhhhccceeeccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHhh
Confidence 99975 122334443433322222222223332 344 778999999998777665
No 178
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=29.29 E-value=77 Score=31.45 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 406 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 406 ~~r~~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
.+|.++|++.+++ |..++.|+++.+ ..-..+++.-|.+|+++|++.+.
T Consensus 4 ~eR~~~Il~~l~~~g~v~v~eLa~~~---------~VS~~TIRRDL~~Le~~g~l~R~ 52 (253)
T COG1349 4 EERHQKILELLKEKGKVSVEELAELF---------GVSEMTIRRDLNELEEQGLLLRV 52 (253)
T ss_pred HHHHHHHHHHHHHcCcEEHHHHHHHh---------CCCHHHHHHhHHHHHHCCcEEEE
Confidence 4578889999875 667999999873 24567899999999999999996
No 179
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=28.43 E-value=1.5e+02 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=18.6
Q ss_pred HHHHHHHhcCC-CcEEEcCCCCCcCCh
Q 009940 369 FQSTYKFLELS-PHALIPMHGRVNLWP 394 (522)
Q Consensus 369 ~~SL~~l~~l~-~~~ivPgHG~~~~~~ 394 (522)
.+++..+...+ +++++-|-|.....+
T Consensus 41 ~~~l~~~~~~~~peiliiGTG~~~~~~ 67 (109)
T cd00248 41 PEALLPLLAEDRPDILLIGTGAEIAFL 67 (109)
T ss_pred HHHHHHHHhhCCCCEEEEcCCCCCCcC
Confidence 34566666666 999999999865433
No 180
>PRK13518 carboxylate-amine ligase; Provisional
Probab=28.34 E-value=50 Score=34.69 Aligned_cols=63 Identities=16% Similarity=0.056 Sum_probs=46.7
Q ss_pred ccCCCCCCceeeeccccccccccchh-----chHHHHHHHcCCeeccCcceeeccccc-CCCCCCCCceeE
Q 009940 54 IQGEKSEPTISIQGSEKINLGKFDIE-----SALNQILEQLGFGVRDGGEWKLWKCVE-EPEFGPGLTIHT 118 (522)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~l~~~~l~~~~~w~~-~~~~~~~~r~dT 118 (522)
+..|..++-|.|.-.-+.++..+..+ ..+.+.+++.|+.+.+.+-.||++|-+ +. .++.||.-
T Consensus 51 ~~~El~~~qvEi~T~~~~~~~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~--t~~~RY~~ 119 (357)
T PRK13518 51 LDHELFKFVIETQTPLIEDPSEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEH--AEKPRYRS 119 (357)
T ss_pred ccccccCceEEEcCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCC--CCCcHHHH
Confidence 45566566777776666666555444 478999999999999999999999966 43 56677754
No 181
>PF14493 HTH_40: Helix-turn-helix domain
Probab=28.29 E-value=1.1e+02 Score=25.16 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCC
Q 009940 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNK 458 (522)
Q Consensus 411 ~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~ 458 (522)
..++..++|. |++||++. +.+..++|..||..+...|.
T Consensus 5 ~T~~l~~~G~-si~eIA~~---------R~L~~sTI~~HL~~~~~~g~ 42 (91)
T PF14493_consen 5 ITYELFQKGL-SIEEIAKI---------RGLKESTIYGHLAELIESGE 42 (91)
T ss_pred HHHHHHHcCC-CHHHHHHH---------cCCCHHHHHHHHHHHHHhCC
Confidence 4567777764 99999986 45788999999999999998
No 182
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=27.87 E-value=1.3e+02 Score=20.85 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=30.1
Q ss_pred HHHHHH-cCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 412 ILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 412 il~~l~-~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+++.+. .+..+..++...+ .....++..++..|++.|.|.+.
T Consensus 5 il~~l~~~~~~s~~~l~~~l---------~~s~~tv~~~l~~L~~~g~i~~~ 47 (53)
T smart00420 5 ILELLAQQGKVSVEELAELL---------GVSEMTIRRDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHH---------CCCHHHHHHHHHHHHHCCCEEEe
Confidence 444443 3456888888885 23456788899999999998765
No 183
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=27.65 E-value=2.7e+02 Score=24.03 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=35.1
Q ss_pred cCCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCCCCCCeEE
Q 009940 270 VDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (522)
Q Consensus 270 iGG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~g~~l~l----gg~~l~vi~tPGHT~g~i~l 335 (522)
......+++..+...+++++.++..+. +.+|+.+.+ |...+.+.-+++--+|.+.+
T Consensus 20 ~~~~~~l~~~~~~~~v~i~p~dA~~~g----------i~~Gd~V~v~s~~g~~~~~~~~~~~v~~g~v~~ 79 (129)
T cd02782 20 LHNDPRLVKGRNRCTLRIHPDDAAALG----------LADGDKVRVTSAAGSVEAEVEVTDDMMPGVVSL 79 (129)
T ss_pred hhhCchhhccCCCceEEECHHHHHHcC----------CCCCCEEEEEcCCCeEEEEEEECCCcCCCeEEe
Confidence 334455666667778999999988764 336666654 23345566666666665554
No 184
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=27.33 E-value=1e+02 Score=30.58 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 406 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 406 ~~r~~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
.+|.++|++.+++ +..++.|+.+.+ ..-..+++.-|..|+++|++++.
T Consensus 4 ~~R~~~Il~~l~~~~~~~~~ela~~l---------~vS~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 4 TQRHDAIIELVKQQGYVSTEELVEHF---------SVSPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHHHHcCCEeHHHHHHHh---------CCCHHHHHHHHHHHHHCCCEEEe
Confidence 4677888888875 446999999874 23456788999999999999886
No 185
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=27.21 E-value=43 Score=24.80 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=19.4
Q ss_pred hhhhcCCCCCceeEEeecCCCCCCCcc
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPKFNDE 33 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (522)
|++.+ ++| ||+=+|.+++++.|+|
T Consensus 8 aiVlT--~dG-eF~~ik~~~~~~vG~e 31 (56)
T PF12791_consen 8 AIVLT--PDG-EFIKIKRKPGMEVGQE 31 (56)
T ss_pred EEEEc--CCC-cEEEEeCCCCCcccCE
Confidence 44555 456 9999999999999988
No 186
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=26.85 E-value=1e+02 Score=29.42 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=36.5
Q ss_pred HHHHHHHcC--CCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 411 AILQAIENG--VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 411 ~il~~l~~g--~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+|++.+.+| ..|..||.+++. +...++..|+++|+..|.+...
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~---------iS~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALT---------ISRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhC---------ccHHHHHHHHHHHHhCCeEEEE
Confidence 688888876 369999999854 6778899999999999998776
No 187
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=26.38 E-value=1.2e+02 Score=30.32 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcccee
Q 009940 406 RAREAAILQAIENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEF 463 (522)
Q Consensus 406 ~~r~~~il~~l~~g-~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (522)
.+|..+|++.+++. ..++.|+++.+ + .-..+++..|..|+++|++.+..
T Consensus 16 ~eR~~~Il~~L~~~~~vtv~eLa~~l--~-------VS~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 16 SERREQIIQRLRQQGSVQVNDLSALY--G-------VSTVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHHHHcCCEeHHHHHHHH--C-------CCHHHHHHHHHHHHhCCCeEEEe
Confidence 56788899998754 56999999885 2 33478999999999999998874
No 188
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=25.26 E-value=2.3e+02 Score=21.91 Aligned_cols=55 Identities=15% Similarity=0.358 Sum_probs=39.1
Q ss_pred HHHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceec
Q 009940 409 EAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFS 464 (522)
Q Consensus 409 ~~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~ 464 (522)
.+.|.+.++. +..+..|++..+...+.. .+.+....+...++.|.+++.+.+..+
T Consensus 10 ~AaIVrimK~~k~~~~~~L~~~v~~~l~~-~f~~~~~~ik~~Ie~LIekeyi~Rd~~ 65 (68)
T PF10557_consen 10 DAAIVRIMKQEKKLSHDELINEVIEELKK-RFPPSVSDIKKRIESLIEKEYIERDED 65 (68)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHHHHTTT-TS---HHHHHHHHHHHHHTTSEEEESS
T ss_pred hhheehhhhhcCceeHHHHHHHHHHHhcC-CcCCCHHHHHHHHHHHHHhhhhhcCCC
Confidence 3456666654 345889999998877654 233567788999999999999988744
No 189
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=24.93 E-value=1.4e+02 Score=29.63 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 406 RAREAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 406 ~~r~~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
.+|.++|++.+++ +..+..|+++.+ ..-..+++..|..|+++|++.+.
T Consensus 4 ~~R~~~Il~~l~~~~~~~~~ela~~l---------~vS~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 4 AQRHQILLELLAQLGFVTVEKVIERL---------GISPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHH---------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 4677788888875 456999999883 24456788999999999999775
No 190
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=24.76 E-value=1.2e+02 Score=21.88 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcccee
Q 009940 413 LQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEF 463 (522)
Q Consensus 413 l~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (522)
+..+..++.|..||...+- ....++..+++.|.++|.+....
T Consensus 3 l~~l~~~~~~~~~i~~~l~---------is~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 3 LKLLAEGELCVCELAEILG---------LSQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred HHHhhcCCccHHHHHHHHC---------CCHHHHHHHHHHHHHCCCeeeee
Confidence 3444456678888888751 34457888999999999998664
No 191
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.54 E-value=3.1e+02 Score=22.94 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=42.2
Q ss_pred EEEEcCCCcccc------CCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCCCceEEEC----CEEEEEEeCCCC
Q 009940 259 IVFVTHHHRDHV------DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVG----GQRLTVVFSPGH 328 (522)
Q Consensus 259 ~IiiTH~H~DHi------GG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~g~~l~lg----g~~l~vi~tPGH 328 (522)
.+++|-.+.+|+ .....+++..+...+++++.++..+. +++|+.+.+- ...+.+.-+++-
T Consensus 5 ~~l~t~~~~~~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~~lg----------i~~Gd~V~v~~~~G~~~~~v~i~~~i 74 (116)
T cd02790 5 LVLTTGRVLYHYHTGTMTRRAEGLDAIAPEEYVEINPEDAKRLG----------IEDGEKVRVSSRRGSVEVRARVTDRV 74 (116)
T ss_pred EEEEecchHHHhcccccccccHHHHhhCCCcEEEECHHHHHHcC----------CCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 455555444432 23456666667778999999988764 3467766652 234556666776
Q ss_pred CCCCeEEE
Q 009940 329 TDGHVALL 336 (522)
Q Consensus 329 T~g~i~l~ 336 (522)
.+|.+.+.
T Consensus 75 ~~g~v~~~ 82 (116)
T cd02790 75 PEGVVFMP 82 (116)
T ss_pred CCCEEEEe
Confidence 67766553
No 192
>PHA00738 putative HTH transcription regulator
Probab=24.53 E-value=1.3e+02 Score=25.88 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHcC-CCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 411 AILQAIENG-VETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 411 ~il~~l~~g-~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+|+..+.++ +.++.||+..+ .+....+..||..|.+.|.|...
T Consensus 16 ~IL~lL~~~e~~~V~eLae~l---------~lSQptVS~HLKvLreAGLV~sr 59 (108)
T PHA00738 16 KILELIAENYILSASLISHTL---------LLSYTTVLRHLKILNEQGYIELY 59 (108)
T ss_pred HHHHHHHHcCCccHHHHHHhh---------CCCHHHHHHHHHHHHHCCceEEE
Confidence 477777665 57888887764 25567788999999999999777
No 193
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.30 E-value=4.4e+02 Score=22.29 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=36.9
Q ss_pred CHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCCCCCCeEEE
Q 009940 272 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALL 336 (522)
Q Consensus 272 G~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~g~~l~l----gg~~l~vi~tPGHT~g~i~l~ 336 (522)
....+++..+...+++|+.+++.+. +++|+.+.+ |...+.+..+++=-+|.+.+.
T Consensus 19 ~~~~l~~~~~~~~v~i~p~dA~~~g----------i~~Gd~V~v~s~~G~i~~~v~v~~~v~~g~v~~~ 77 (123)
T cd02778 19 NNPLLHELTPENTLWINPETAARLG----------IKDGDRVEVSSARGKVTGKARLTEGIRPDTVFMP 77 (123)
T ss_pred cCHHHHhcCCCCeEEECHHHHHHcC----------CCCCCEEEEEeCCCcEEEEEEEcCCcCCCEEEEe
Confidence 3456777777888999999988764 346776665 334556666666556666554
No 194
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=24.06 E-value=1.7e+02 Score=24.13 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcc
Q 009940 409 EAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLP 460 (522)
Q Consensus 409 ~~~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~ 460 (522)
-..|++.+. |..|+.+|++.+-..++... -+...+..+++.|.++|.|.
T Consensus 38 g~~Iw~~~D-G~~tv~eIi~~L~~~y~~~~--~~~~DV~~fl~~L~~~g~i~ 86 (88)
T PRK02079 38 AGEILGLID-GKRTVAAIIAELQQQFPDVP--GLDEDVLEFLEVARAKHWIE 86 (88)
T ss_pred HHHHHHHcc-CCCCHHHHHHHHHHHccchh--hHHHHHHHHHHHHHHCcCEE
Confidence 345777775 46699999998865553221 25578999999999999875
No 195
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=23.00 E-value=2.5e+02 Score=26.95 Aligned_cols=118 Identities=18% Similarity=0.127 Sum_probs=69.8
Q ss_pred hhhhcCCCCCceeEEeecCCCCC--CCccccccccccccCCCCccccccccCCCCCCceeeeccccccccccchhchHHH
Q 009940 7 ALILKNPLNDSEFLLVKQTPPPK--FNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (522)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
|++=+++. .+.+|+||-+||. +=-| ||++-++..+.-. .+|++|
T Consensus 80 ~il~~dG~--~~ivL~kQfRpP~Gk~ciE------------lPAGLiD~ge~~~--------------------~aAiRE 125 (225)
T KOG3041|consen 80 AILESDGK--PYIVLVKQFRPPTGKICIE------------LPAGLIDDGEDFE--------------------GAAIRE 125 (225)
T ss_pred EEEecCCc--EEEEEEEeecCCCCcEEEE------------cccccccCCCchH--------------------HHHHHH
Confidence 33444444 3899999999996 4444 6766665544222 689999
Q ss_pred HHHHcCCeeccCcceeecccccCCCCCCCCceeEEEEEeEcCCC-------CCCcccccccccHHHHHHHHHhcCCCCCc
Q 009940 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQSCINCLAEVKPSTDR 157 (522)
Q Consensus 85 ~l~~~gl~l~~~~l~~~~~w~~~~~~~~~~r~dT~ff~a~~p~~-------~~~e~~~~~W~~~~~al~~l~~~~~~~~r 157 (522)
+-++.|..-..+ ...-.-+.-|---+-.-..-|.-+=+..|+. +++|-.+++=+.-.+-.+.+...+....-
T Consensus 126 l~EEtGy~gkv~-~~s~~~f~DPGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l~~~~~~ 204 (225)
T KOG3041|consen 126 LEEETGYKGKVD-MVSPTVFLDPGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADLDSVGMS 204 (225)
T ss_pred HHHHhCccceee-eccccEEcCCCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhhhhcceE
Confidence 999999982221 1222222332100112233344444555554 66788888888777777777777755444
Q ss_pred cc
Q 009940 158 VG 159 (522)
Q Consensus 158 ~g 159 (522)
++
T Consensus 205 id 206 (225)
T KOG3041|consen 205 ID 206 (225)
T ss_pred ee
Confidence 44
No 196
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=21.81 E-value=2.1e+02 Score=23.19 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=30.8
Q ss_pred HHHHHHH-cCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcccee
Q 009940 411 AILQAIE-NGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEF 463 (522)
Q Consensus 411 ~il~~l~-~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (522)
+|.+.++ +|..++.+|...+- .....|.+.|++|+..|+|.+..
T Consensus 6 qlRd~l~~~gr~s~~~Ls~~~~---------~p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 6 QVRDLLALRGRMEAAQISQTLN---------TPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHHHcCcccHHHHHHHHC---------cCHHHHHHHHHHHHHCCCeEeec
Confidence 4556654 35567888877743 22345778899999999998774
No 197
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.74 E-value=2.6e+02 Score=23.89 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=36.3
Q ss_pred HHHHHHHc--CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcccee
Q 009940 411 AILQAIEN--GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEF 463 (522)
Q Consensus 411 ~il~~l~~--g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (522)
.|++.+.+ +..|++||.+.+-+..+. ....+|-..|+.|.+.|.|.+..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~----is~~TVYR~L~~L~e~Gli~~~~ 62 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPR----ISLATVYRTLDLLEEAGLIRKIE 62 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT------HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCC----cCHHHHHHHHHHHHHCCeEEEEE
Confidence 36666643 356999999998865553 45678888999999999998873
No 198
>PLN02594 phosphatidate cytidylyltransferase
Probab=21.63 E-value=3.9e+02 Score=27.92 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=33.2
Q ss_pred HHHhcC-CCcEEEcCCCCCcCChHHHH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCCcc
Q 009940 373 YKFLEL-SPHALIPMHGRVNLWPKHML-CGYLKNRRAREAAILQAIENGVETLFDIVANVYSEVPRSF 438 (522)
Q Consensus 373 ~~l~~l-~~~~ivPgHG~~~~~~~~~i-~~~l~~~~~r~~~il~~l~~g~~T~~ei~~~~y~~~~~~~ 438 (522)
+|-.+. |...++||||...+..+..+ ..-..+. -+...++....+..++.+.++..+++.+
T Consensus 260 KR~~~IKDfG~~IPGHGGilDRfDs~l~~~~f~y~-----y~~~fi~~~~~~~~~il~~i~~~l~~~~ 322 (342)
T PLN02594 260 KRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYI-----YYQSFIVPQSVSVGKLLDQILTLLTDEE 322 (342)
T ss_pred HHccCCCcccCccCCCccccccccHHHHHHHHHHH-----HHHHHhcCCCCCHHHHHHHHHHcCCHHH
Confidence 444443 34579999999875433321 1111110 1122233344588888888888777543
No 199
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=21.57 E-value=67 Score=32.56 Aligned_cols=79 Identities=25% Similarity=0.278 Sum_probs=46.0
Q ss_pred eeEEeecCCCCCCCc----cccccccccccCCCCccccccccCCCCCCceeeec-cccccccccchhchHHHHHHHcCCe
Q 009940 18 EFLLVKQTPPPKFND----EEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQG-SEKINLGKFDIESALNQILEQLGFG 92 (522)
Q Consensus 18 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gl~ 92 (522)
.||++||-+|.-|.+ |.-+--+| +.+-..=- +|.|+.|+- +--+|-..--++.+=.+++++.|..
T Consensus 40 q~l~vrqfr~ai~~~~~s~~~~~~~~~---------~~d~~~~~-~e~g~tielc~g~idke~s~~eia~eev~eecgy~ 109 (405)
T KOG4432|consen 40 QFLLVRQFRPAIFTASNSPENHGKEFD---------KIDWSSYD-SETGYTIELCAGLIDKELSPREIASEEVAEECGYR 109 (405)
T ss_pred hhehhhhhchhheecccCCCCCCcccc---------cccHhhCC-CccceeeeeeccccccccCHHHHhHHHHHHHhCCc
Confidence 799999999986543 21111111 11111111 267887773 2233433444566777899999999
Q ss_pred eccCcceeeccccc
Q 009940 93 VRDGGEWKLWKCVE 106 (522)
Q Consensus 93 l~~~~l~~~~~w~~ 106 (522)
+.+|.|...-.++.
T Consensus 110 v~~d~l~hv~~~~~ 123 (405)
T KOG4432|consen 110 VDPDDLIHVITFVV 123 (405)
T ss_pred CChhHceEEEEEEe
Confidence 99988765444443
No 200
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=21.39 E-value=1.8e+02 Score=21.14 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=34.6
Q ss_pred HHHHH-HcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceeccchh
Q 009940 412 ILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSILKF 468 (522)
Q Consensus 412 il~~l-~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~ 468 (522)
++..+ +.++.+..||...+. ....++...+..|++.|.|.+..+....
T Consensus 8 iL~~l~~~~~~~~~~la~~~~---------~~~~~~t~~i~~L~~~g~I~r~~~~~D~ 56 (59)
T PF01047_consen 8 ILRILYENGGITQSELAEKLG---------ISRSTVTRIIKRLEKKGLIERERDPDDR 56 (59)
T ss_dssp HHHHHHHHSSEEHHHHHHHHT---------S-HHHHHHHHHHHHHTTSEEEEEETTET
T ss_pred HHHHHHHcCCCCHHHHHHHHC---------CChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 34444 345678888888853 5667888999999999999988665433
No 201
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=21.34 E-value=2e+02 Score=21.94 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 411 AILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 411 ~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+++..+.+++.+..++.+.+ .....++..|+..|++.|.....
T Consensus 4 ~il~~L~~~~~~~~eLa~~l---------~vS~~tv~~~l~~L~~~g~~i~~ 46 (69)
T TIGR00122 4 RLLALLADNPFSGEKLGEAL---------GMSRTAVNKHIQTLREWGVDVLT 46 (69)
T ss_pred HHHHHHHcCCcCHHHHHHHH---------CCCHHHHHHHHHHHHHCCCeEEe
Confidence 46777777787888888875 24557889999999999885443
No 202
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=21.18 E-value=1.8e+02 Score=27.57 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=35.9
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCcccee
Q 009940 408 REAAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEF 463 (522)
Q Consensus 408 r~~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~ 463 (522)
+..+++..+.+ ++.+..|+.+.+- ....++..||..|++.|.|.+..
T Consensus 144 ~~~~IL~~l~~~g~~s~~eia~~l~---------is~stv~r~L~~Le~~GlI~r~~ 191 (203)
T TIGR01884 144 EELKVLEVLKAEGEKSVKNIAKKLG---------KSLSTISRHLRELEKKGLVEQKG 191 (203)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCCCEEEEc
Confidence 34467777765 6679999998862 34557889999999999998874
No 203
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=20.78 E-value=2.4e+02 Score=22.33 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccceeccchhhhccchhhH
Q 009940 408 REAAILQAIENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKEFSILKFRKTCGLHFL 477 (522)
Q Consensus 408 r~~~il~~l~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~~~~~~~~~~~~~~~~ 477 (522)
-..+|+..+.+++.+..+|+... .+....+..+|+.|++.|.|.. .+..+.--..|..|.
T Consensus 7 Ii~~IL~~l~~~~~~~t~i~~~~---------~L~~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 7 IIFDILKILSKGGAKKTEIMYKA---------NLNYSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHHHHHH-TT-B-HHHHHTTS---------T--HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh---------CcCHHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHH
Confidence 34567888876776776666432 2566778899999999999944 233333334444433
No 204
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=20.66 E-value=2.8e+02 Score=26.04 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 410 AAILQAIEN-GVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 410 ~~il~~l~~-g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
..|++++.. |..|.+||+..+ .+....++.||..|.++|.|...
T Consensus 25 ~~Vl~~L~~~g~~tdeeLA~~L---------gi~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 25 FEVLKALIKKGEVTDEEIAEQT---------GIKLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred hHHHHHHHHcCCcCHHHHHHHH---------CCCHHHHHHHHHHHHHCCCeEEe
Confidence 346666543 777888888874 35567899999999999999854
No 205
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.56 E-value=5.4e+02 Score=21.94 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=37.3
Q ss_pred CCHHHHHHhCCCCEEEEcHhHHHHhccCCCCCCceecCCCceEEE----CCEEEEEEeCCCCCCCCeEE
Q 009940 271 DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (522)
Q Consensus 271 GG~~~l~~~~p~a~V~a~~~~~~~l~~~~~~~~~~~l~~g~~l~l----gg~~l~vi~tPGHT~g~i~l 335 (522)
.....+.+..|...+++++.+++.+. +.+|+.+.+ |...+++..+++--+|.+.+
T Consensus 20 ~~~~~l~~~~~~~~v~i~p~dA~~~g----------i~~Gd~V~v~s~~G~i~~~a~~~~~v~~g~v~~ 78 (124)
T cd02785 20 SNVPWLLELQPEPRVKINPIDAAARG----------IAHGDLVEVYNDRGSVVCKAKVDDGIQPGVVTA 78 (124)
T ss_pred cCHHHHHhhCCCCeEEECHHHHHHcC----------CCCCCEEEEEeCCCEEEEEEEECCCcCCCEEEe
Confidence 34566777677888999999988764 346776665 23456666777777776654
No 206
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=20.53 E-value=1.9e+02 Score=27.47 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=34.1
Q ss_pred HHHHHH-HcCCCCHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHCCCccce
Q 009940 411 AILQAI-ENGVETLFDIVANVYSEVPRSFWIPAASNVRLHVDHLADQNKLPKE 462 (522)
Q Consensus 411 ~il~~l-~~g~~T~~ei~~~~y~~~~~~~~~~a~~~v~ahL~~L~~~g~i~~~ 462 (522)
+|+..+ ..++.|..||...+ .+...++..||+.|+++|.|.+.
T Consensus 5 ~IL~~L~~~~~~t~~eLA~~l---------gis~~tV~~~L~~Le~~GlV~r~ 48 (203)
T TIGR02702 5 DILSYLLKQGQATAAALAEAL---------AISPQAVRRHLKDLETEGLIEYE 48 (203)
T ss_pred HHHHHHHHcCCCCHHHHHHHH---------CcCHHHHHHHHHHHHHCCCeEEe
Confidence 466665 35678999999885 24567899999999999999876
No 207
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=20.38 E-value=1.1e+02 Score=34.17 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=28.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCCccEEEEcCCCccccC
Q 009940 232 ALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVD 271 (522)
Q Consensus 232 ~iLIDtG~~~~~~~~L~~~~~~~~~i~~IiiTH~H~DHiG 271 (522)
.+|+|.|+..+...++.++ +.-+++.|++-|+|+|-.-
T Consensus 421 ~VlvDnGsTeEDipA~~~~--k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 421 LVLVDNGSTEEDIPAIKQL--KAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred EEEEcCCCcccccHHHHHH--HhcCCCEEEEcCCCCcchh
Confidence 5799999988765555543 2346788999999999876
Done!