BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009941
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DYO|A Chain A, Crystal Structure Of Human Aspartyl Aminopeptidase (Dnpep)
In Complex With Aspartic Acid Hydroxamate
Length = 485
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/480 (46%), Positives = 296/480 (61%), Gaps = 7/480 (1%)
Query: 41 RTLHNFSTSGIAQXXXXXXIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWE 100
R + +G A+ +LL ++N S +PFHA AE + L+ AGF L E ++W
Sbjct: 8 RGAMQVAMNGKARKEAVQTAAKELLKFVNRSPSPFHAVAECRNRLLQAGFSELKETEKWN 67
Query: 101 LKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVN 160
+KP YF TRN S ++AFAVG +Y GNGF +I AHTD G+ V
Sbjct: 68 IKPESKYFMTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVG 127
Query: 161 VQTYGGGLWHTWFDRDLTVAGRVIVR-GSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNK 219
V+TYGGG+W TWFDRDLT+AGRVIV+ + G +LV V+RP+LR+P LAIHL R +N+
Sbjct: 128 VETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQQLVHVERPILRIPHLAIHLQRNINE 187
Query: 220 DGFKPNLETQLIPLLAXXXXXXXXXXXXXX-XXXXXXXXHHPQLMQILSQELGCGTDDIA 278
+ F PN E L+P+LA HH LM +L LG DI
Sbjct: 188 N-FGPNTEMHLVPILATAIQEELEKGTPEPGPLNAVDERHHSVLMSLLCAHLGLSPKDIV 246
Query: 279 SIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVA 338
+EL + DTQP+ LGGA +EFIF+ RLDNL S +C L+ALIDSC P +L++E +RMV
Sbjct: 247 EMELCLADTQPAVLGGAYDEFIFAPRLDNLHSCFCALQALIDSCAGPGSLATEPHVRMVT 306
Query: 339 LFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVH 398
L+DNEEVGS+S QGA + +RRI S H T+FE I +SF++SADMAH VH
Sbjct: 307 LYDNEEVGSESAQGAQSLLTELVLRRISASCQHP----TAFEEAIPKSFMISADMAHAVH 362
Query: 399 PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMG 458
PN+ +KHEE+HRP KG VIK N+ QRYA++ V+ L +E+A +P Q+ +VRND
Sbjct: 363 PNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANKVKVPLQDLMVRNDTP 422
Query: 459 CGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKL 518
CG+TIGPILAS +G+R +D G QL+MHS+RE+ T + FK F+E F S+ + L
Sbjct: 423 CGTTIGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFFELFPSLAENL 482
>pdb|3VAR|A Chain A, Crystal Structure Of Dnpep, Znzn Form
pdb|3VAT|A Chain A, Crystal Structure Of Dnpep, Znmg Form
Length = 496
Score = 433 bits (1113), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/474 (46%), Positives = 297/474 (62%), Gaps = 7/474 (1%)
Query: 50 GIAQXXXXXXIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFF 109
G A+ +LL ++N S +PFHA AE + L+ AGF L E + W++KP YF
Sbjct: 28 GRARKEAVQAAARELLKFVNRSPSPFHAVAECRSRLLQAGFHELKETESWDIKPESKYFL 87
Query: 110 TRNMSCLVAFAVGQKYSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLW 169
TRN S ++AFAVG +Y GNGF +I AHTD G+ V V+TYGGG+W
Sbjct: 88 TRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVETYGGGIW 147
Query: 170 HTWFDRDLTVAGRVIVR-GSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNLET 228
TWFDRDLT+AGRVIV+ + G +LV V RP+LR+P LAIHL R VN++ F PN+E
Sbjct: 148 STWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNEN-FGPNMEM 206
Query: 229 QLIPLLAXXXXXXXXXXXXXX-XXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDT 287
L+P+LA HH L +L LG +DI +EL + DT
Sbjct: 207 HLVPILATSIQEELEKGTPEPGPLNATDERHHSVLTSLLCAHLGLSPEDILEMELCLADT 266
Query: 288 QPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 347
QP+ LGGA EFIF+ RLDNL S +C L+ALIDSC +P++L+++ +RM+AL+DNEEVGS
Sbjct: 267 QPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCSAPASLAADPHVRMIALYDNEEVGS 326
Query: 348 DSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEE 407
+S QGA + +RRI S H T+FE I +S+++SADMAH VHPN+ +KHEE
Sbjct: 327 ESAQGAQSLLTELVLRRISASPQHL----TAFEEAIPKSYMISADMAHAVHPNYLDKHEE 382
Query: 408 HHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPIL 467
+HRP KG VIK N+ QRYA++ V+ L +E+A +P Q+ +VRND CG+TIGPIL
Sbjct: 383 NHRPLFHKGPVIKVNSKQRYASNAVSEALIREVASSVGVPLQDLMVRNDSPCGTTIGPIL 442
Query: 468 ASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKLIVD 521
AS +G+R +D G QL+MHS+RE T + FK F+E F S+ + L+VD
Sbjct: 443 ASRLGLRVLDLGSPQLAMHSIRETACTTGVLQTITLFKGFFELFPSLSRSLLVD 496
>pdb|2IJZ|A Chain A, Crystal Structure Of Aminopeptidase
pdb|2IJZ|B Chain B, Crystal Structure Of Aminopeptidase
pdb|2IJZ|C Chain C, Crystal Structure Of Aminopeptidase
pdb|2IJZ|D Chain D, Crystal Structure Of Aminopeptidase
pdb|2IJZ|E Chain E, Crystal Structure Of Aminopeptidase
pdb|2IJZ|F Chain F, Crystal Structure Of Aminopeptidase
pdb|2IJZ|G Chain G, Crystal Structure Of Aminopeptidase
pdb|2IJZ|H Chain H, Crystal Structure Of Aminopeptidase
pdb|2IJZ|I Chain I, Crystal Structure Of Aminopeptidase
pdb|2IJZ|J Chain J, Crystal Structure Of Aminopeptidase
pdb|2IJZ|K Chain K, Crystal Structure Of Aminopeptidase
pdb|2IJZ|L Chain L, Crystal Structure Of Aminopeptidase
Length = 428
Score = 311 bits (796), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 176/447 (39%), Positives = 254/447 (56%), Gaps = 30/447 (6%)
Query: 64 LLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQ 123
L+D+L S TPFHATA R L AG+ L+E D W + GG Y+ TRN S L+A +G+
Sbjct: 8 LIDFLKASPTPFHATASLARRLEAAGYRRLDERDAWHTETGGRYYVTRNDSSLIAIRLGR 67
Query: 124 KYSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWFDRDLTVAGRV 183
+ + +GF ++ AHTD G+L + V+ YGG L+ WFDRDL++AGRV
Sbjct: 68 RSPLESGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSLAGRV 127
Query: 184 IVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNLETQLIPLLAXXXXXXXX 243
R ++G +LV ++ + +P L IHL+R N +G+ N + +L P++A
Sbjct: 128 TFR-ANGKLESRLVDFRKAIAVIPNLNIHLNRAAN-EGWPINAQNELPPIIAQLAPGEAA 185
Query: 244 XXXXXXXXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSG 303
L + L +E G D + EL+ DTQ + + G N+EFI
Sbjct: 186 DFRLL-------------LDEQLLREHGITADVVLDYELSFYDTQSAAVVGLNDEFIAGA 232
Query: 304 RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIR 363
RLDNL S + GL AL+++ E+ I + D+EEVGS S+ GA P + Q +R
Sbjct: 233 RLDNLLSCHAGLEALLNA------EGDENCILVCT--DHEEVGSCSHCGADGPFLEQVLR 284
Query: 364 RIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNA 423
R++ +F I++S LVSAD AHGVHPN++++H+ +H P + G VIK N+
Sbjct: 285 RLL-------PEGDAFSRAIQRSLLVSADNAHGVHPNYADRHDANHGPALNGGPVIKINS 337
Query: 424 NQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL 483
NQRYAT+ TA F+ + + +P Q FV R+DMGCGSTIGPI AS VG+RTVD G+
Sbjct: 338 NQRYATNSETAGFFRHLCQDSEVPVQSFVTRSDMGCGSTIGPITASQVGVRTVDIGLPTF 397
Query: 484 SMHSVREICGTEDIDIAYRHFKAFYES 510
+MHS+RE+ G+ D+ + AFY S
Sbjct: 398 AMHSIRELAGSHDLAHLVKVLGAFYAS 424
>pdb|4EME|A Chain A, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|B Chain B, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|C Chain C, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|D Chain D, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
Length = 571
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 30/283 (10%)
Query: 262 LMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDS 321
L+ +LS+EL C +DI EL + DTQ C G EFI R DNL S+C I+
Sbjct: 281 LLYLLSKELNCKEEDILDFELCLMDTQEPCFTGVYEEFIEGARFDNLLGSFCVFEGFIEL 340
Query: 322 CVSPSN------------------LSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIR 363
S N + + + + +D+EE+GS S GA + I
Sbjct: 341 VNSIKNHTSNENTNHTNNITNDINDNIHNNLYISIGYDHEEIGSLSEVGARSYCTKNFID 400
Query: 364 RIVGSLAHEHVSETSFECT------IRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGL 417
RI+ S+ + + E + + +SF+++ DMAH HPN+ E +++H+ +G+
Sbjct: 401 RIISSVFKKEIHEKNLSVQEIYGNLVNRSFILNVDMAHCSHPNYPETVQDNHQLFFHEGI 460
Query: 418 VIKHNANQRYATSGVTAFLFKEIAKLH------NLPTQEFVVRNDMGCGSTIGPILASGV 471
IK+N N+ Y TS + A L K +L+ + Q F+V+ND CGST+G ++A+ +
Sbjct: 461 AIKYNTNKNYVTSPLHASLIKRTFELYYNKYKQQIKYQNFMVKNDTPCGSTVGSMVAANL 520
Query: 472 GIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSI 514
+ +D GI QL+MHS+REI D+ + AFY ++ +
Sbjct: 521 SMPGIDIGIPQLAMHSIREIAAVHDVFFLIKGVFAFYTYYNQV 563
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
Query: 63 DLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVG 122
D L ++ S + F A K L + GF L+E + W L GY + + F VG
Sbjct: 12 DALKFIQRSGSNFLACKNLKERLENNGFINLSEGETWNLNKNEGYVLCKENRNICGFFVG 71
Query: 123 QKYSVGNGFHIIA-AHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWFDRDLTVAG 181
+ +++ G +I+ H D +NV+ YG GLWHTWFDR L ++G
Sbjct: 72 KNFNIDTGSILISIGHIDSCALKISPNNNVIKKKIHQINVECYGSGLWHTWFDRSLGLSG 131
Query: 182 RVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHL-DRTVNKDGFKPNLETQLIPLLA 235
+V+ + + + KL+++ + +L +P+LAIHL +RT K N E + P+++
Sbjct: 132 QVLYKKGN-KLVEKLIQINKSVLFLPSLAIHLQNRTRYDFSVKINYENHIKPIIS 185
>pdb|1Y7E|A Chain A, The Crystal Structure Of Aminopeptidase I From Borrelia
Burgdorferi B31
Length = 458
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/441 (22%), Positives = 178/441 (40%), Gaps = 33/441 (7%)
Query: 76 HATAEAKRLLIDAGFELLNENDEWELKPGGGYFFT-RNMSCLVAFAVGQKYSVGNGFHII 134
+A +AK+L GF +N ++ L PG F+T R S VAFA+ K + +G + I
Sbjct: 41 YALDKAKKL----GF--INAEEKKNLXPGDKIFYTCREKS--VAFAIIGKNPIEDGXNFI 92
Query: 135 AAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLH 194
+HTD + YGG + W L++ G V ++ + ++
Sbjct: 93 VSHTDSPRLDAKPSPISEENELTFIKTNYYGGIKKYQWLSTPLSIRGVVFLKNGEKVEIN 152
Query: 195 KLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNL-ETQLIPLLAXXXXXXXXXXXXXXXXXX 253
P+ +P + HLDR + ++ + E + + +L
Sbjct: 153 IGDNENDPVFVIPDILPHLDRKIQRNKKSDEIVEGENLKILIGSLPIETKEKNKVKLAT- 211
Query: 254 XXXXHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYC 313
+Q++ ++ +D S E+ I + G + I + D+ +
Sbjct: 212 ---------LQLIKEKYKIEEEDFVSSEIEIVPAGTAKDVGFDKALIGAYGQDDKICVFT 262
Query: 314 GLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEH 373
L ++ D +P+ + + L D EE+GS G + + + + +
Sbjct: 263 SLESIFDLEETPNKTA------ICFLVDKEEIGSTGSTGLDSRYLEYFVSDXIFKIKKSE 316
Query: 374 VSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQ--RYATSG 431
+ + + S +SAD+ ++P FS H+E + P++ G+ I + S
Sbjct: 317 YNNLHVQKALWNSKSISADVCAAINPLFSSVHDEQNAPQLGYGIPIXKYTGHGGKSMASD 376
Query: 432 VTAFLFKEIAKLHNLPTQEFVV----RNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHS 487
A L I +L N + V + + G G T+ LA G GIRT+D G A +S HS
Sbjct: 377 ADAELVSYIRQLLNKNNIAWQVATLGKVEEGGGGTVAKFLA-GYGIRTIDXGPAVISXHS 435
Query: 488 VREICGTEDIDIAYRHFKAFY 508
EI D+ AY +KAFY
Sbjct: 436 PXEITSKFDLYNAYLAYKAFY 456
>pdb|2GLF|A Chain A, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|B Chain B, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|C Chain C, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|D Chain D, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
Length = 450
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 104/458 (22%), Positives = 180/458 (39%), Gaps = 44/458 (9%)
Query: 66 DYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM-SCLVAFAVGQK 124
++ +++ T E KR+L ++GF L +++ P + N + AF V
Sbjct: 25 EFXSKAKTERXTVKEIKRILDESGFVPL---EDFAGDPXNXTVYAVNRGKAIAAFRVVD- 80
Query: 125 YSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWFDRDLTVAGRVI 184
+ G +++ AH D + YGG + W L + G +
Sbjct: 81 -DLKRGLNLVVAHIDSPRLDFKPNPLIEDEQIALFKTHYYGGIKKYHWLSIPLEIHGVLF 139
Query: 185 VRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNK--DGFKPN---LETQLIPLLAXXXX 239
+H K + P+ +P L HLD+ K + FK L IPL
Sbjct: 140 KNDGTEIEIHIGDKPEDPVFTIPDLLPHLDKEDAKISEKFKGENLXLIAGTIPLSGEEKE 199
Query: 240 XXXXXXXXXXXXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEF 299
+++IL++ G +D S E+ + G +
Sbjct: 200 AVKT-----------------NVLKILNEXYGITEEDFVSGEIEVVPAFSPREVGXDRSL 242
Query: 300 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMF 359
I + D+ +Y LRAL+ + + E +I ++ FD EE+GSD GA A
Sbjct: 243 IGAYGQDDRICAYTALRALLSA-------NPEKSIGVI-FFDKEEIGSDGNTGAKARFYL 294
Query: 360 QAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKG--L 417
+A+R+I+ + SE + + + ++S D+ V+P + + H+ H+ P++ G L
Sbjct: 295 KALRQILKXQGAKD-SEFVLDEVLENTSVISGDVCAAVNPPYKDVHDLHNAPKLGYGVAL 353
Query: 418 VIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVV----RNDMGCGSTIGPILASGVGI 473
V A +Y+T+ A + K+ N + V + D G G TI A G
Sbjct: 354 VKYTGARGKYSTNDAHAEFVARVRKVLNEQGVIWQVATLGKVDQGGGGTIAKFFAE-RGS 412
Query: 474 RTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESF 511
+D G A L HS EI D+ Y +++ E
Sbjct: 413 DVIDXGPALLGXHSPFEISSKADLFETYVAYRSLXEKL 450
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/423 (23%), Positives = 166/423 (39%), Gaps = 46/423 (10%)
Query: 101 LKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVN 160
LK G + L+ F +G K + GF I+ AH D M+
Sbjct: 66 LKEGDKVYANNRGKGLIMFLIG-KEPLYTGFKILGAHIDSPRLDLKQNPLYEDTDLAMLE 124
Query: 161 VQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLV--KVKRPLLRVPTLAIHL----- 213
YGG + W L + G VIV+ DG+ ++ V P+ V + +HL
Sbjct: 125 THYYGGIKKYQWVTLPLAIHG-VIVK-KDGTIVNVCVGEDDNDPVFGVSDILVHLASEQL 182
Query: 214 DRTVNK--DGFKPNLETQLIPLLAXXXXXXXXXXXXXXXXXXXXXXHHPQLMQILSQELG 271
++ +K +G N+ IPL H+ +M+IL+++
Sbjct: 183 EKKASKVIEGEDLNILIGSIPL--------------KDGEEKQKVKHN--IMKILNEKYD 226
Query: 272 CGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSE 331
+D S EL I + G + + D+ +Y A+++ + +
Sbjct: 227 ISEEDFVSAELEIVPAGKARDYGFDRSMVMGYGQDDRICAYTSFEAMLE-------MKNA 279
Query: 332 HAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSA 391
+ L D EEVGS G + + I+ SL ++ E + S ++S+
Sbjct: 280 KKTCITILVDKEEVGSIGATGMQSKFFENTVADIM-SLCGDY-DELKLRKALYNSEMLSS 337
Query: 392 DMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEF 451
D++ PN+ E+ + + KG+V R SG + IA+L + ++E
Sbjct: 338 DVSAAFDPNYPNVMEKRNSAYLGKGIVFNKYTGSR-GKSGCNDANPEYIAELRRILSKES 396
Query: 452 VV-------RNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHF 504
V + D G G TI ILA G++ +DCG+A L+ H+ EI DI +
Sbjct: 397 VNWQTAELGKVDQGGGGTIAYILAE-YGMQVIDCGVALLNXHAPWEISSKADIYETKNGY 455
Query: 505 KAF 507
AF
Sbjct: 456 SAF 458
>pdb|2WZN|A Chain A, 3d Structure Of Tet3 From Pyrococcus Horikoshii
Length = 354
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 365 IVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHR--PEMQKGLVIKHN 422
IVGS+ E S+ ++ ++ + F+++ + + PE+ KG V+
Sbjct: 209 IVGSVQEE----VGLRGARVASYAINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVG 264
Query: 423 ANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ 482
N + AF E+AK + +P Q G + + I GV T I
Sbjct: 265 PN---INPKLRAFA-DEVAKKYEIPLQVEPSPRPTGTDANVMQINKEGVA--TAVLSIPI 318
Query: 483 LSMHSVREICGTEDIDIAYRHFKAFYESFSSID 515
MHS E+ D+D + KA E +D
Sbjct: 319 RYMHSQVELADARDVDNTIKLAKALLEELKPMD 351
>pdb|2PE3|A Chain A, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|B Chain B, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|C Chain C, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|D Chain D, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
Length = 354
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 365 IVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHR--PEMQKGLVIKHN 422
IVGS+ E S+ ++ ++ + F+++ + + PE+ KG V+
Sbjct: 209 IVGSVQEE----VGLRGARVASYAINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVG 264
Query: 423 ANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ 482
N + AF E+AK + +P Q G + + I GV T I
Sbjct: 265 PN---INPKLRAFA-DEVAKKYEIPLQVEPSPRPTGTDANVMQINREGVA--TAVLSIPI 318
Query: 483 LSMHSVREICGTEDIDIAYRHFKAFYESFSSID 515
MHS E+ D+D + KA E +D
Sbjct: 319 RYMHSQVELADARDVDNTIKLAKALLEELKPMD 351
>pdb|1XFO|A Chain A, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|B Chain B, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|C Chain C, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|D Chain D, Crystal Structure Of An Archaeal Aminopeptidase
Length = 357
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 437 FKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTED 496
+E+AK H +P Q ++ +G G+ G I + G+ T + +HS E+ D
Sbjct: 281 LEELAKKHEIPYQLEIL---LGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERD 337
Query: 497 ID 498
+D
Sbjct: 338 VD 339
>pdb|1Y0R|A Chain A, Crystal Structure Of The Tetrahedral Aminopeptidase From
P. Horikoshii
pdb|1Y0Y|A Chain A, Crystal Structure Of Tetrahedral Aminopeptidase From P.
Horikoshii In Complex With Amastatin
Length = 353
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 437 FKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTED 496
+E+AK H +P Q ++ +G G+ G I + G+ T + +HS E+ D
Sbjct: 277 LEELAKKHEIPYQLEIL---LGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERD 333
Query: 497 ID 498
+D
Sbjct: 334 VD 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,573,074
Number of Sequences: 62578
Number of extensions: 569210
Number of successful extensions: 1235
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 15
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)