Query 009941
Match_columns 522
No_of_seqs 266 out of 1365
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 19:09:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2596 Aminopeptidase I zinc 100.0 2E-134 5E-139 1019.8 37.7 465 52-521 9-479 (479)
2 COG1362 LAP4 Aspartyl aminopep 100.0 9E-126 2E-130 974.5 38.8 428 59-510 7-435 (437)
3 PTZ00371 aspartyl aminopeptida 100.0 1E-123 3E-128 998.4 47.4 459 57-521 5-465 (465)
4 PF02127 Peptidase_M18: Aminop 100.0 2E-124 4E-129 994.8 31.2 431 67-508 1-432 (432)
5 PRK02813 putative aminopeptida 100.0 2E-119 5E-124 957.7 47.2 424 57-510 4-427 (428)
6 PRK02256 putative aminopeptida 100.0 9E-119 2E-123 957.3 43.5 451 34-510 3-461 (462)
7 PRK09864 putative peptidase; P 100.0 2.8E-58 6.1E-63 478.6 31.0 338 60-513 5-343 (356)
8 COG1363 FrvX Cellulase M and r 100.0 2.2E-56 4.8E-61 461.2 33.1 343 58-514 5-349 (355)
9 TIGR03107 glu_aminopep glutamy 100.0 1.9E-55 4.1E-60 457.7 31.8 338 60-513 3-343 (350)
10 PRK09961 exoaminopeptidase; Pr 100.0 1.7E-54 3.7E-59 450.8 31.0 332 59-513 4-335 (344)
11 PF05343 Peptidase_M42: M42 gl 100.0 8.9E-53 1.9E-57 428.5 19.2 290 115-503 2-292 (292)
12 TIGR03106 trio_M42_hydro hydro 100.0 1.2E-50 2.6E-55 421.3 33.5 332 57-509 5-340 (343)
13 TIGR01882 peptidase-T peptidas 98.6 1.8E-05 4E-10 84.7 24.6 53 459-512 355-407 (410)
14 PF01546 Peptidase_M20: Peptid 98.3 4.7E-06 1E-10 78.3 10.4 159 297-510 26-189 (189)
15 TIGR01883 PepT-like peptidase 97.3 0.0006 1.3E-08 71.3 7.4 74 430-509 288-361 (361)
16 PRK13381 peptidase T; Provisio 96.8 0.0035 7.5E-08 66.9 7.8 78 429-512 326-403 (404)
17 PRK05469 peptidase T; Provisio 96.8 0.0036 7.8E-08 66.9 7.7 79 429-513 328-406 (408)
18 PRK10199 alkaline phosphatase 96.6 0.0023 5E-08 67.3 4.5 45 303-352 140-184 (346)
19 PRK08554 peptidase; Reviewed 96.5 0.006 1.3E-07 66.2 7.7 77 429-511 360-436 (438)
20 PF04389 Peptidase_M28: Peptid 96.3 0.0022 4.8E-08 60.3 2.1 154 300-499 20-177 (179)
21 PRK07338 hypothetical protein; 96.0 0.014 3E-07 62.2 6.5 78 430-513 321-399 (402)
22 PRK07473 carboxypeptidase; Pro 95.9 0.011 2.3E-07 62.8 5.5 75 431-511 300-375 (376)
23 PRK12891 allantoate amidohydro 95.9 0.02 4.3E-07 61.5 7.5 78 429-513 331-410 (414)
24 PRK08652 acetylornithine deace 95.6 0.02 4.4E-07 59.2 6.0 76 430-511 268-344 (347)
25 TIGR01246 dapE_proteo succinyl 95.5 0.032 6.9E-07 58.6 7.0 76 430-511 294-370 (370)
26 PRK06837 acetylornithine deace 95.5 0.033 7.1E-07 60.0 7.2 80 430-514 344-424 (427)
27 TIGR01902 dapE-lys-deAc N-acet 95.4 0.032 7E-07 57.9 6.7 80 429-513 255-335 (336)
28 TIGR01880 Ac-peptdase-euk N-ac 95.1 0.058 1.3E-06 57.4 7.6 78 430-513 319-399 (400)
29 PRK13983 diaminopimelate amino 94.9 0.074 1.6E-06 56.2 7.7 75 429-509 323-398 (400)
30 PRK12890 allantoate amidohydro 94.9 0.072 1.6E-06 57.1 7.7 77 429-512 333-411 (414)
31 PRK09290 allantoate amidohydro 94.8 0.072 1.6E-06 57.1 7.5 77 429-512 332-410 (413)
32 PRK04443 acetyl-lysine deacety 94.8 0.072 1.6E-06 55.7 7.1 77 430-511 271-348 (348)
33 PRK13009 succinyl-diaminopimel 94.3 0.11 2.5E-06 54.4 7.3 75 431-511 298-373 (375)
34 PRK08651 succinyl-diaminopimel 94.3 0.1 2.2E-06 55.2 7.0 77 430-512 313-391 (394)
35 COG2195 PepD Di- and tripeptid 94.2 0.21 4.6E-06 53.9 9.1 81 426-512 331-412 (414)
36 PRK06915 acetylornithine deace 94.1 0.12 2.6E-06 55.4 7.1 81 429-514 338-420 (422)
37 PRK00466 acetyl-lysine deacety 93.8 0.17 3.6E-06 52.8 7.4 77 430-512 266-343 (346)
38 PRK08596 acetylornithine deace 93.6 0.18 3.9E-06 54.2 7.4 80 430-515 338-419 (421)
39 PRK08737 acetylornithine deace 93.6 0.15 3.2E-06 54.0 6.6 72 431-509 290-362 (364)
40 PRK13004 peptidase; Reviewed 93.5 0.088 1.9E-06 56.1 4.8 78 430-512 317-396 (399)
41 TIGR01893 aa-his-dipept aminoa 93.4 0.2 4.3E-06 54.9 7.5 79 428-511 396-476 (477)
42 PRK08588 succinyl-diaminopimel 93.3 0.22 4.7E-06 52.5 7.2 77 430-511 296-375 (377)
43 TIGR03176 AllC allantoate amid 92.9 0.16 3.4E-06 54.7 5.5 76 430-512 326-403 (406)
44 PRK09133 hypothetical protein; 92.7 0.22 4.9E-06 54.3 6.5 77 430-512 386-469 (472)
45 PRK15026 aminoacyl-histidine d 92.7 0.26 5.6E-06 54.4 7.0 80 428-511 402-482 (485)
46 PRK07318 dipeptidase PepV; Rev 92.5 0.15 3.2E-06 55.7 4.8 75 430-511 388-464 (466)
47 PRK12893 allantoate amidohydro 92.5 0.28 6.1E-06 52.4 6.9 77 429-511 331-408 (412)
48 TIGR03176 AllC allantoate amid 92.0 0.39 8.4E-06 51.6 7.1 53 71-141 29-81 (406)
49 PRK12892 allantoate amidohydro 91.6 0.37 8.1E-06 51.4 6.6 76 429-511 332-409 (412)
50 PRK06446 hypothetical protein; 91.2 0.42 9.2E-06 51.7 6.5 79 430-512 351-434 (436)
51 TIGR03320 ygeY M20/DapE family 91.0 0.3 6.6E-06 51.9 5.1 77 430-511 315-393 (395)
52 TIGR01879 hydantase amidase, h 91.0 0.53 1.1E-05 50.3 6.9 76 429-510 324-400 (401)
53 TIGR01910 DapE-ArgE acetylorni 90.7 0.44 9.6E-06 50.2 6.0 67 430-502 306-374 (375)
54 PRK13799 unknown domain/N-carb 90.4 0.57 1.2E-05 53.0 6.8 78 429-512 510-589 (591)
55 PRK13013 succinyl-diaminopimel 90.3 0.73 1.6E-05 49.4 7.3 78 432-515 344-425 (427)
56 PRK07906 hypothetical protein; 90.3 0.77 1.7E-05 49.3 7.4 76 430-511 341-426 (426)
57 PRK07079 hypothetical protein; 90.0 0.82 1.8E-05 49.9 7.4 81 430-514 374-457 (469)
58 TIGR03526 selenium_YgeY putati 89.6 0.62 1.4E-05 49.5 6.0 77 430-511 315-393 (395)
59 PRK10199 alkaline phosphatase 89.1 0.75 1.6E-05 48.6 5.9 81 58-142 38-122 (346)
60 PRK07522 acetylornithine deace 88.7 0.84 1.8E-05 48.1 6.1 51 460-511 332-383 (385)
61 PRK06133 glutamate carboxypept 88.2 0.84 1.8E-05 49.0 5.8 77 431-511 328-406 (410)
62 PRK05111 acetylornithine deace 87.6 1.1 2.4E-05 47.1 6.3 51 460-511 329-380 (383)
63 TIGR01893 aa-his-dipept aminoa 87.3 2.3 5E-05 46.6 8.7 70 58-143 7-76 (477)
64 COG0624 ArgE Acetylornithine d 87.3 1.8 3.9E-05 46.1 7.7 77 430-512 329-407 (409)
65 PRK13007 succinyl-diaminopimel 86.8 1.1 2.3E-05 46.6 5.5 49 459-508 302-351 (352)
66 PRK09104 hypothetical protein; 86.4 1.9 4.2E-05 46.9 7.4 78 430-512 381-462 (464)
67 PRK13590 putative bifunctional 85.5 1.6 3.4E-05 49.5 6.3 78 429-512 508-587 (591)
68 PRK12891 allantoate amidohydro 85.1 1.5 3.3E-05 47.1 5.7 50 74-141 39-88 (414)
69 PLN02280 IAA-amino acid hydrol 85.0 5.4 0.00012 44.1 10.1 77 430-511 388-473 (478)
70 PRK13590 putative bifunctional 84.9 1.3 2.8E-05 50.2 5.3 33 106-141 231-263 (591)
71 TIGR01892 AcOrn-deacetyl acety 84.9 1.8 3.9E-05 45.1 6.0 48 459-507 315-363 (364)
72 PRK13799 unknown domain/N-carb 84.7 1.3 2.8E-05 50.1 5.2 81 58-141 162-263 (591)
73 TIGR01886 dipeptidase dipeptid 83.9 1.7 3.8E-05 47.5 5.6 75 430-511 388-464 (466)
74 PRK08201 hypothetical protein; 83.7 3.2 7E-05 45.1 7.6 75 431-512 374-454 (456)
75 TIGR01879 hydantase amidase, h 81.9 2.5 5.3E-05 45.2 5.7 52 73-142 29-80 (401)
76 PRK06156 hypothetical protein; 80.7 3.8 8.2E-05 45.6 6.9 73 431-513 439-516 (520)
77 TIGR01883 PepT-like peptidase 80.7 6.3 0.00014 41.1 8.2 73 58-142 3-75 (361)
78 PRK12890 allantoate amidohydro 80.1 5 0.00011 42.9 7.4 54 71-142 34-87 (414)
79 PRK15026 aminoacyl-histidine d 80.0 7 0.00015 43.3 8.6 69 60-144 15-83 (485)
80 KOG2195 Transferrin receptor a 78.9 6.2 0.00013 45.6 7.9 152 291-491 355-514 (702)
81 PRK12892 allantoate amidohydro 78.6 6.1 0.00013 42.1 7.4 49 74-141 38-86 (412)
82 PRK07205 hypothetical protein; 78.1 4.8 0.0001 43.6 6.5 72 430-511 365-441 (444)
83 TIGR01910 DapE-ArgE acetylorni 77.7 2.9 6.3E-05 44.0 4.6 49 300-351 98-147 (375)
84 PRK04443 acetyl-lysine deacety 77.5 7.1 0.00015 40.7 7.4 65 57-142 8-72 (348)
85 PRK07907 hypothetical protein; 77.4 6.7 0.00015 42.5 7.4 78 430-512 365-447 (449)
86 PRK08262 hypothetical protein; 77.3 3.4 7.3E-05 45.3 5.1 78 430-512 400-484 (486)
87 PRK08651 succinyl-diaminopimel 76.8 2.7 5.8E-05 44.5 4.0 41 305-351 113-153 (394)
88 TIGR01902 dapE-lys-deAc N-acet 76.7 7.4 0.00016 40.3 7.2 62 60-142 2-63 (336)
89 PRK06837 acetylornithine deace 75.5 6.5 0.00014 42.4 6.6 81 57-141 22-109 (427)
90 PRK12893 allantoate amidohydro 75.4 9.2 0.0002 40.8 7.7 51 74-142 39-89 (412)
91 PRK08596 acetylornithine deace 75.4 3.8 8.3E-05 44.0 4.8 46 303-351 115-160 (421)
92 PRK07473 carboxypeptidase; Pro 75.3 3.3 7.2E-05 43.9 4.2 45 303-350 109-153 (376)
93 PRK00466 acetyl-lysine deacety 75.1 3.4 7.4E-05 43.0 4.2 42 303-351 89-130 (346)
94 PRK07338 hypothetical protein; 75.0 19 0.00042 38.1 10.0 76 57-141 16-104 (402)
95 TIGR01891 amidohydrolases amid 74.2 9.4 0.0002 40.0 7.3 67 59-142 3-69 (363)
96 PRK08588 succinyl-diaminopimel 74.2 3.9 8.4E-05 43.0 4.4 68 57-141 4-71 (377)
97 PRK06915 acetylornithine deace 73.9 4.5 9.7E-05 43.3 4.8 49 299-350 126-175 (422)
98 PRK13009 succinyl-diaminopimel 73.8 9.8 0.00021 39.8 7.3 67 57-141 4-70 (375)
99 PRK13381 peptidase T; Provisio 73.8 4.6 0.0001 43.0 4.9 43 305-351 137-179 (404)
100 TIGR01892 AcOrn-deacetyl acety 73.6 4.3 9.3E-05 42.2 4.5 48 299-351 90-138 (364)
101 COG2234 Iap Predicted aminopep 73.5 4.8 0.0001 43.3 5.0 75 300-399 222-296 (435)
102 PRK07205 hypothetical protein; 73.4 4.3 9.3E-05 44.0 4.6 48 299-349 108-156 (444)
103 PRK13983 diaminopimelate amino 73.2 9.1 0.0002 40.3 6.9 78 57-142 7-89 (400)
104 PRK13004 peptidase; Reviewed 73.2 11 0.00024 40.1 7.6 66 57-142 17-82 (399)
105 PRK07318 dipeptidase PepV; Rev 72.9 3.8 8.3E-05 44.7 4.1 44 304-350 116-159 (466)
106 PRK08262 hypothetical protein; 71.1 5.4 0.00012 43.7 4.8 46 303-351 151-196 (486)
107 PRK08652 acetylornithine deace 70.1 5.2 0.00011 41.3 4.2 35 57-91 4-38 (347)
108 PRK07906 hypothetical protein; 68.7 20 0.00042 38.5 8.3 71 59-143 3-79 (426)
109 PRK06133 glutamate carboxypept 68.6 7 0.00015 41.9 4.9 43 305-350 135-177 (410)
110 PRK09290 allantoate amidohydro 68.4 14 0.00031 39.5 7.2 51 74-142 36-86 (413)
111 PRK07522 acetylornithine deace 67.9 6.6 0.00014 41.3 4.4 70 57-141 6-76 (385)
112 TIGR03526 selenium_YgeY putati 67.0 19 0.0004 38.3 7.7 66 57-142 15-80 (395)
113 PRK09133 hypothetical protein; 67.0 6.9 0.00015 42.7 4.5 73 57-141 39-113 (472)
114 TIGR01880 Ac-peptdase-euk N-ac 65.7 24 0.00051 37.5 8.2 68 60-141 14-83 (400)
115 PRK09104 hypothetical protein; 65.1 7.3 0.00016 42.4 4.2 44 303-349 125-168 (464)
116 TIGR03320 ygeY M20/DapE family 61.6 24 0.00052 37.4 7.3 65 57-141 15-79 (395)
117 PRK06446 hypothetical protein; 61.5 9.9 0.00021 41.1 4.4 44 302-349 99-142 (436)
118 PRK13007 succinyl-diaminopimel 60.9 23 0.00049 36.7 6.9 66 57-143 9-75 (352)
119 PRK13013 succinyl-diaminopimel 60.7 10 0.00022 40.6 4.2 48 299-349 115-163 (427)
120 PRK06156 hypothetical protein; 60.4 10 0.00022 42.1 4.4 44 305-351 153-196 (520)
121 PRK08201 hypothetical protein; 59.8 10 0.00022 41.2 4.1 44 303-349 117-160 (456)
122 PLN02280 IAA-amino acid hydrol 57.9 25 0.00054 38.9 6.8 68 57-143 95-166 (478)
123 PRK05111 acetylornithine deace 57.9 13 0.00027 39.2 4.3 44 303-351 108-151 (383)
124 TIGR01246 dapE_proteo succinyl 57.9 29 0.00064 36.2 7.1 65 59-141 3-67 (370)
125 PLN02693 IAA-amino acid hydrol 56.0 42 0.00092 36.5 8.1 78 429-511 335-420 (437)
126 PRK05469 peptidase T; Provisio 53.7 20 0.00043 38.3 5.1 39 305-346 139-177 (408)
127 TIGR01887 dipeptidaselike dipe 53.5 19 0.0004 39.4 4.9 69 430-508 374-447 (447)
128 TIGR01886 dipeptidase dipeptid 53.4 18 0.00038 39.7 4.7 46 303-351 114-159 (466)
129 TIGR01900 dapE-gram_pos succin 53.3 26 0.00055 37.1 5.8 63 62-142 3-65 (373)
130 PF05382 Amidase_5: Bacterioph 52.8 91 0.002 29.0 8.5 37 77-113 52-88 (145)
131 PRK08554 peptidase; Reviewed 50.8 21 0.00046 38.8 4.8 41 303-348 100-140 (438)
132 TIGR01887 dipeptidaselike dipe 50.3 18 0.00038 39.5 4.1 46 303-351 103-148 (447)
133 COG0624 ArgE Acetylornithine d 48.4 47 0.001 35.3 6.9 72 57-141 15-87 (409)
134 PRK07907 hypothetical protein; 48.3 27 0.00058 37.9 5.1 42 303-350 121-162 (449)
135 TIGR01900 dapE-gram_pos succin 48.2 29 0.00062 36.7 5.2 50 297-347 93-143 (373)
136 PRK07079 hypothetical protein; 46.8 23 0.0005 38.7 4.3 47 302-350 123-169 (469)
137 COG3655 Predicted transcriptio 43.6 19 0.00041 29.7 2.2 24 260-283 45-68 (73)
138 PF08854 DUF1824: Domain of un 43.6 68 0.0015 29.2 6.0 81 58-143 22-112 (125)
139 cd05565 PTS_IIB_lactose PTS_II 42.0 45 0.00097 28.9 4.5 51 428-486 11-61 (99)
140 PRK08737 acetylornithine deace 35.0 45 0.00098 35.2 4.1 35 303-347 99-133 (364)
141 COG2257 Uncharacterized homolo 33.3 43 0.00094 28.7 2.9 23 430-452 30-52 (92)
142 PLN02693 IAA-amino acid hydrol 32.3 1E+02 0.0022 33.6 6.4 65 59-142 51-115 (437)
143 PF03698 UPF0180: Uncharacteri 31.8 63 0.0014 27.1 3.6 41 79-119 11-51 (80)
144 cd07371 2A5CPDO_AB The alpha a 31.6 4.3E+02 0.0092 26.8 10.4 82 419-511 79-162 (268)
145 cd07372 2A5CPDO_B The beta sub 31.1 6.1E+02 0.013 26.2 11.7 82 428-511 95-179 (294)
146 TIGR00715 precor6x_red precorr 30.2 84 0.0018 31.9 5.0 63 437-506 189-253 (256)
147 PRK10602 murein peptide amidas 30.2 3.3E+02 0.0072 27.3 9.1 71 430-512 165-235 (237)
148 cd07362 HPCD_like Class III ex 30.1 6E+02 0.013 25.8 12.2 78 427-511 88-167 (272)
149 PRK13365 protocatechuate 4,5-d 27.1 4.9E+02 0.011 26.7 10.0 120 381-511 45-177 (279)
150 TIGR02298 HpaD_Fe 3,4-dihydrox 26.8 3.2E+02 0.007 28.0 8.6 76 427-511 92-171 (282)
151 COG1015 DeoB Phosphopentomutas 24.6 66 0.0014 34.5 3.1 55 387-447 328-384 (397)
152 KOG2194 Aminopeptidases of the 23.6 91 0.002 36.9 4.2 58 302-362 159-218 (834)
153 cd08344 MhqB_like_N N-terminal 21.7 1.8E+02 0.004 24.3 4.9 45 76-123 66-110 (112)
No 1
>KOG2596 consensus Aminopeptidase I zinc metalloprotease (M18) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-134 Score=1019.83 Aligned_cols=465 Identities=60% Similarity=0.977 Sum_probs=436.7
Q ss_pred cccccHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCc
Q 009941 52 AQSSSSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGF 131 (522)
Q Consensus 52 ~~~~~~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~ 131 (522)
+.++....++++|++|||+||||||||++++++|.++||++|+|++.|+++||+|||++||+++|+||.+|++|.+++||
T Consensus 9 ~~k~~~~s~a~efl~fln~spTpfHav~e~k~~Ll~agF~~LsE~~~W~iepg~kyf~tRN~S~iiAFavG~ky~pgnGf 88 (479)
T KOG2596|consen 9 PSKECKSSAAQEFLDFLNKSPTPFHAVQEFKERLLKAGFKELSEKSDWQIEPGGKYFVTRNGSSIIAFAVGGKYVPGNGF 88 (479)
T ss_pred CCchhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHccchhcccccCcccCCCceEEEEccCceEEEEeccCcccCCCce
Confidence 33444677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEEC-CCCceEEEeeecCCCeEEcCCCC
Q 009941 132 HIIAAHTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRG-SDGSFLHKLVKVKRPLLRVPTLA 210 (522)
Q Consensus 132 ~ii~AH~Dspg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~-~~G~~~~~lv~~~~pv~vIp~la 210 (522)
.||+|||||||++|||.+....+||++++|++|||++|+|||||||++||||+||. ++|+++++||++++|+++||+||
T Consensus 89 ~iigaHtDSpcLrlKP~Sk~s~~gylqVgV~tYGGgiw~tWfDRDLsvaGRvivk~~~~~~~~~~LV~v~rPllrIPtLA 168 (479)
T KOG2596|consen 89 SIIGAHTDSPCLRLKPVSKRSAEGYLQVGVETYGGGIWHTWFDRDLSVAGRVIVKEAGDGKLIHRLVDVKRPLLRIPTLA 168 (479)
T ss_pred eEEEecCCCcceeecccccccccceEEEEEeecCCccchhhccccccccceEEEEecCCcceeeeeecCCCceeecccee
Confidence 99999999999999999988899999999999999999999999999999999994 56889999999999999999999
Q ss_pred cccccccccCCCCCCcccceeeeeeccCccccCC--ccccC-C--CCCCccCChhHHHHHHHHHcCCCCCceeEEEeEee
Q 009941 211 IHLDRTVNKDGFKPNLETQLIPLLATKSEETSVE--PKEKS-S--TSSSKVTHHPQLMQILSQELGCGTDDIASIELNIC 285 (522)
Q Consensus 211 iHL~~~~~~~~~~~n~~~~l~~~iG~~~~~~~~~--~~~~~-~--~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~ 285 (522)
|||+|+.| ++|++|.|++|.|++|....+++.+ +++++ + ..+.+++|++.||.++|+++|++++||++|||.++
T Consensus 169 iHldr~~n-~~f~pn~EtqlvPil~t~~~~~~~~~e~~~~~~~~~~~~~~~~Hhp~Ll~liak~lg~~~edIvd~eL~l~ 247 (479)
T KOG2596|consen 169 IHLDRDVN-EGFKPNTETQLVPILGTAIPAEEEKTEKPSDDGDKPRNSSKGKHHPVLLGLIAKELGCTPEDIVDFELILY 247 (479)
T ss_pred eecCCccc-ccCCCCccceeeeeecccCchhhhcCCCCCCCCccccccccccccHHHHHHHHHHhCCCHHHhhheeeeee
Confidence 99999999 7899999999999999876542211 11111 1 36667899999999999999999999999999999
Q ss_pred ecCCcccccCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHH
Q 009941 286 DTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRI 365 (522)
Q Consensus 286 d~~~~~~~Gl~~e~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri 365 (522)
|+||++++|+++|||+++|||||.||||++.||+.+... .++++++.+.++++||||||||.++|||.|.|++++|+||
T Consensus 248 Dtq~a~lgG~~~eFiFs~RLDnl~~sF~al~aLi~s~~~-~~l~~e~~ir~valfDnEEvGS~SaQGA~s~~l~~vl~Ri 326 (479)
T KOG2596|consen 248 DTQKATLGGANDEFIFSPRLDNLLSSFCALQALIDSAEG-ESLENESGIRMVALFDNEEVGSDSAQGAGSPFLESVLRRI 326 (479)
T ss_pred cCCchhhcCcccceeecccccchhhHHHHHHHHHHHhcC-CCcccCCCeEEEEeccchhhcchhhccCCCccHHHHHHHH
Confidence 999999999999999999999999999999999998654 3566677899999999999999999999999999999999
Q ss_pred HHhcCCCCCChhHHHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCC
Q 009941 366 VGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHN 445 (522)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~g 445 (522)
...++. .+..+.+++++||+||+||+||+||||+++|+++|+|.|++|||||+|+||||+||....++++++|++++
T Consensus 327 ss~~~~---~~~~~~~ai~kSflvSADmaHa~hPNy~~kheenH~P~~h~G~vik~naNqryaTn~v~~~l~kevA~~~~ 403 (479)
T KOG2596|consen 327 SSLFGS---FPTAFEEAIAKSFLVSADMAHAVHPNYSDKHEENHRPLLHGGPVIKVNANQRYATNSVGSALVKEVAELAK 403 (479)
T ss_pred HHhcCC---CchHHHHHhhhheeeehhhhhhcCCCchhhhhhccCCccCCCceEEEcCCcceeccchhHHHHHHHHHHcC
Confidence 998764 57889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhhccccccccccc
Q 009941 446 LPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKLIVD 521 (522)
Q Consensus 446 Ip~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~~~~~~~~~~~~ 521 (522)
+|+|.|++|||+|||||||||+|+++||+|+|+|+|||+|||+||||+.+|++..+++|++||++|+.++.++.+|
T Consensus 404 vplQ~fvVrNdspcGsTIGPiLAS~~G~RTlDlG~pqLsMHSiRe~~gs~dv~~~~~lFk~Ff~~f~sv~~~~~vd 479 (479)
T KOG2596|consen 404 VPLQDFVVRNDSPCGSTIGPILASKTGIRTLDLGIPQLSMHSIREMCGSKDVEQAVKLFKGFFERFSSVESKLVVD 479 (479)
T ss_pred CCceeEEEecCCCCccccchhhhhhcCceeeecCchhhhhHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998875
No 2
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-126 Score=974.47 Aligned_cols=428 Identities=44% Similarity=0.762 Sum_probs=408.8
Q ss_pred HHHHH-HHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEe
Q 009941 59 SIVGD-LLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (522)
Q Consensus 59 ~~a~~-~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH 137 (522)
+.+++ |++||++||||||+|++++++|.++||.+|+|.+.|+.++|+|||++|+|++||||.+|++|.+++||.||+||
T Consensus 7 ~~~~~~f~~FI~~spTpyh~v~~i~~~L~~~Gf~~l~e~~~w~~~~ggkyf~~r~gssliAf~ig~~~~~~~gf~IigaH 86 (437)
T COG1362 7 ELAEDEFIDFISASPTPYHVVANIAERLLKAGFRELEEKDAWKDKPGGKYFVTRNGSSLIAFIIGKKWKLESGFRIIGAH 86 (437)
T ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHHcCchhhhhhhcccccCCCeEEEEcCCceEEEEEecCCCCCCCCeEEEEee
Confidence 35555 99999999999999999999999999999999999998899999999999999999999998888999999999
Q ss_pred ccCCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCceEEEeeecCCCeEEcCCCCccccccc
Q 009941 138 TDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTV 217 (522)
Q Consensus 138 ~Dspg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~~~~~lv~~~~pv~vIp~laiHL~~~~ 217 (522)
||||+|++||+|.++.+||.+++|++|||++++|||||||+|+|||.+++++++++++||++++||++||+|||||+|+.
T Consensus 87 tDSP~l~lKp~p~~~~~g~~~~~~e~YGG~~~~~WldrdLsiaGrv~~k~~~~~~~~~lv~~~~Pi~~IP~LaiHL~r~~ 166 (437)
T COG1362 87 TDSPRLRLKPNPDIEVEGYLQLGTEVYGGIILYTWLDRDLSIAGRVFVKDGTGKIISRLVDIDDPILRIPDLAIHLDRDV 166 (437)
T ss_pred cCCCCcccCCCchhhhcceeEEeeEecCCeeecceecCccceeeEEEEecCCCcceeeeccCCCCeeecCcchhhcCcch
Confidence 99999999999999999999999999999999999999999999999997777899999999999999999999999999
Q ss_pred ccCCCCCCcccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEEeEeeecCCcccccCCC
Q 009941 218 NKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANN 297 (522)
Q Consensus 218 ~~~~~~~n~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~ 297 (522)
| +++++|+|++|.|++|..+.++ +++|+..+++++++++||.++|+|++||.++|+|+++++|+++
T Consensus 167 n-~~~~~n~~~~l~piig~~~~~~-------------~~~~~~~ll~~iae~~~v~~ed~vs~dL~~~~~~~a~~~G~~~ 232 (437)
T COG1362 167 N-KSFEINPQENLNPIIGVIPGEE-------------KNKVKASLLKLLAEQLGVEEEDFVSFDLILVDAQKARLVGADG 232 (437)
T ss_pred h-ccCccCccccceeeEeccCccc-------------ccchhHHHHHHHHHHhCCcHhhhhhceEEEecCCcceeeccch
Confidence 8 7899999999999999976321 2458899999999999999999999999999999999999999
Q ss_pred CeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCCChh
Q 009941 298 EFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSET 377 (522)
Q Consensus 298 e~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~~~~ 377 (522)
+||+++|||||+|||++++||+.+++ .+.+.++++||||||||.|+|||.|+||+++|+||+.+++. +++
T Consensus 233 efi~a~rlDn~~~~~a~m~AL~~~~~-------~~~~~v~~~fD~EEIGS~s~~GAds~fL~~vLeri~~a~~~---~~~ 302 (437)
T COG1362 233 EFLSAPRLDNLICCHAGMEALLAAAN-------SDKTCVLALFDHEEIGSLSAQGADSPFLENVLERIILALGG---SRD 302 (437)
T ss_pred hhhccCCccchHHHHHHHHHHHhccC-------CCCceEEEEechhhcccccccCcCchhHHHHHHHHHHHccC---ChH
Confidence 99999999999999999999998743 35578999999999999999999999999999999999876 777
Q ss_pred HHHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeccCC
Q 009941 378 SFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDM 457 (522)
Q Consensus 378 ~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~ 457 (522)
++.+++.||++||+||+||+||||+++||++|.|.||+|||||+++|+||+||+++.++++++|+++|||||.|++|+|.
T Consensus 303 ~~~~~l~nS~~iSaD~ahaihPny~~~hd~~n~p~ln~G~vik~~an~ry~td~~~~a~~~~l~~~~~Vp~Q~f~~~~d~ 382 (437)
T COG1362 303 DHLRALANSFLISADVAHAIHPNYPEKHDPNNAPKLNKGPVIKVNANQRYATDSEGIALLRKLAQKAGVPWQVFVLRNDV 382 (437)
T ss_pred HHHHHHhhceeeehhhHhhcCCCCccccCcccCCccCCCceEEecCCCCcccCchHHHHHHHHHHHcCCceEEEEecccC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhh
Q 009941 458 GCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 510 (522)
Q Consensus 458 ~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~ 510 (522)
+|||||||++++++||+|||||+|+|+|||+||++|+.|+++++++|++||++
T Consensus 383 ~~Gstigpi~aa~tGi~tIDiG~~~LsMHS~rE~~g~~D~~~~~~~~~aFf~~ 435 (437)
T COG1362 383 PCGSTIGPILAARTGIRTIDIGPALLSMHSIRELSGSADLYEAYKALSAFFEN 435 (437)
T ss_pred CCCcccchhHHhhcCCceeecchhhhhhccHHHHcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999986
No 3
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=100.00 E-value=1.5e-123 Score=998.35 Aligned_cols=459 Identities=51% Similarity=0.897 Sum_probs=419.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCccc-CCCCceEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYS-VGNGFHIIA 135 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~-~~~g~~ii~ 135 (522)
.++++++|++||++||||||||++++++|+++||++|+|++.|+++||+|||++|+|++|+||.+|+++. +++|++|++
T Consensus 5 ~~~~~~~~~~Fl~~s~t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivg 84 (465)
T PTZ00371 5 ARELAQEFLNFINKTGSPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVG 84 (465)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEE
Confidence 5668999999999999999999999999999999999999999999999999999999999999998864 568999999
Q ss_pred EeccCCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCceEEEeeecCCCeEEcCCCCccccc
Q 009941 136 AHTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDR 215 (522)
Q Consensus 136 AH~Dspg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~~~~~lv~~~~pv~vIp~laiHL~~ 215 (522)
||+|||||+|||||.++++||.+|+||+|||++|+|||||||+|||||++++ +|+++++||++++|+++||+|||||+|
T Consensus 85 aHtDsP~lklKp~~~~~~~g~~~l~ve~YGG~l~~tW~dR~L~laGrV~~~~-~g~~~~~lv~~~~pv~~IP~LaiHl~r 163 (465)
T PTZ00371 85 AHTDSPCLRLKPNSKVTKEGFQQVGVETYGGGLWHTWFDRDLGLAGRVVYKK-DGKLEEKLIRINKPILRIPNLAIHLQT 163 (465)
T ss_pred EeccCCCccccCCCcccCCCEEEEeeEECCChhhccccCCCceeeeEEEEee-CCeEEEEEEeCCCCeEECCchhhhcCc
Confidence 9999999999999999999999999999999999999999999999999997 588999999999999999999999999
Q ss_pred ccccCCCCCCcccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEEeEeeecCCcccccC
Q 009941 216 TVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGA 295 (522)
Q Consensus 216 ~~~~~~~~~n~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl 295 (522)
++|++++++|+|+||.|++|..+.++.. +++.+.+.+++|+..|+++|++++||++|||++|||++||+++++++|+
T Consensus 164 ~~n~~~~~~n~~~~l~pi~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~la~~~gv~~~Div~~dL~l~d~~~~~~~G~ 240 (465)
T PTZ00371 164 STERESFKPNKENHLKPIISTEVYEQLN---GKQDNDNSNNNHSAPLLKLIAKELGCSVEDIVDFDLCLMDTQPSCFGGL 240 (465)
T ss_pred cccccCCCcCccCcceeEEecCcccccc---cccccccccccchHHHHHHHHHHcCCCCCceEEEEEEeecCCcceEeec
Confidence 9885588999999999999876532100 0011112345788899999999999999999999999999999999999
Q ss_pred CCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCC-
Q 009941 296 NNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHV- 374 (522)
Q Consensus 296 ~~e~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~- 374 (522)
+++||+|+|||||+|||++++||+++.+.... .+..+.++++||||||||+|++||+|.|+||+|+||+.+++....
T Consensus 241 ~~e~i~s~rlDnr~~~~~~l~al~~~~~~~~~--~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~ 318 (465)
T PTZ00371 241 NEEFISSPRLDNLGSSFCAFKALTEAVESLGE--NSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNS 318 (465)
T ss_pred CCCeEEEecchhHHHHHHHHHHHHhccccccC--CCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhcccccc
Confidence 99999999999999999999999987531000 124466777899999999999999999999999999998875111
Q ss_pred ChhHHHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEec
Q 009941 375 SETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVR 454 (522)
Q Consensus 375 ~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r 454 (522)
+++.+.+++++|++||+||+||+||||+++|++.|.|.||+||+||++++|+|+||+.+.++++++|+++|||||.|+.|
T Consensus 319 ~~~~~~~~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~Q~~~~~ 398 (465)
T PTZ00371 319 SDDSFAKLMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPIQEFVVK 398 (465)
T ss_pred chhHHHHHHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 26789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhhccccccccccc
Q 009941 455 NDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKLIVD 521 (522)
Q Consensus 455 ~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~~~~~~~~~~~~ 521 (522)
+|++||||+|+|++++.||||+|||+|+|||||||||++++|++++++++++||+.|..++.++.++
T Consensus 399 ~d~~~GsTig~i~~s~~Gi~tvDiGiP~l~MHS~rE~~~~~D~~~~~~l~~af~~~~~~~~~~~~~~ 465 (465)
T PTZ00371 399 NDSPCGSTIGPILSSNLGIRTVDIGIPQLAMHSIREMCGVVDIYYLVKLIKAFFTNYSKVDGSSLLD 465 (465)
T ss_pred CCCCCcchHHHHHHhCCCCcEEEechhhcccccHHHHccHHHHHHHHHHHHHHHHhhhhhcceEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999998887653
No 4
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=100.00 E-value=1.8e-124 Score=994.82 Aligned_cols=431 Identities=52% Similarity=0.869 Sum_probs=372.5
Q ss_pred hhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCCCceec
Q 009941 67 YLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLK 146 (522)
Q Consensus 67 fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dspg~~VK 146 (522)
||++||||||||++++++|+++||++|+|++.|+++||+|||++|+|++||||.+|+++++++|++||+||+||||||||
T Consensus 1 Fl~~spT~~Hav~~~~~~L~~~GF~eL~e~~~W~l~~ggkyy~~r~~ssliAF~vg~~~~~~~G~~ivgaHtDSP~lklK 80 (432)
T PF02127_consen 1 FLDKSPTPFHAVANAKERLEKAGFTELDETEKWDLKPGGKYYVTRNGSSLIAFAVGGKFPPGNGFRIVGAHTDSPCLKLK 80 (432)
T ss_dssp HHHTTSSHHHHHHHHHHHHHHTTHEESTTTSSTT--TTSEEEEEETTTEEEEEEEETTS-GCG-EEEEEEE---SEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCeEcccccccCCCCCCEEEEEeCCCEEEEEEeCCcCCcccceEEEEEecCCCCeeec
Confidence 89999999999999999999999999999999999999999999999999999999997778899999999999999999
Q ss_pred cCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECC-CCceEEEeeecCCCeEEcCCCCcccccccccCCCCCC
Q 009941 147 PKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGS-DGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPN 225 (522)
Q Consensus 147 ~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~-~G~~~~~lv~~~~pv~vIp~laiHL~~~~~~~~~~~n 225 (522)
|||.++++||.+|+||+|||++|+|||||||+|||||+++++ +|+++++||++++|+++||+|||||+|+.| +++++|
T Consensus 81 p~~~~~~~g~~~l~ve~YGG~i~~tW~DR~L~laGrV~~k~~~~~~~~~~lv~~~~pv~~IP~LAiHL~r~~n-~~~~~n 159 (432)
T PF02127_consen 81 PNPEYESDGYAQLNVEVYGGGIWHTWFDRPLSLAGRVVVKDGDEGKPESKLVDIDRPVAIIPNLAIHLDREVN-EGFKLN 159 (432)
T ss_dssp EEEEEEETTEEEEEEEEESS--GGGGTTS-EEEEEEEEETTTTTEEEEEESCSTTS-BBBSS---GGGSTTTT-TS-CTT
T ss_pred CCCccccCCEEEEeeEcCCCcccccccCCccceeEEEEEeeCCCCceeEEEEeCCCCEEEeCCchhccccccc-ccCCcc
Confidence 999999999999999999999999999999999999999987 578999999999999999999999999977 578999
Q ss_pred cccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEEeEeeecCCcccccCCCCeeeccCC
Q 009941 226 LETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRL 305 (522)
Q Consensus 226 ~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~e~I~s~~L 305 (522)
+|.||.|+++....... +.+.++ .+++|+..|++++++++||+++||++|||++||+||++++|+++|||+|+||
T Consensus 160 ~q~~l~pi~~~~~~~~~--~~~~~~---~~~~~~~~ll~~la~~~gi~~~dIl~~DL~l~d~~~~~~~G~~~efI~s~rl 234 (432)
T PF02127_consen 160 KQKHLEPILGLSGESSL--PEDDEE---DKNRHKPSLLKLLAEELGIEEEDILDFDLYLYDAQPARIVGLDEEFISSPRL 234 (432)
T ss_dssp TSTTSGGEEEECCHHHH--HTTTSS---SSSHHHHHHHHHHHHHHT--GGGCCCEEEEEEEES--EEETTTTSEEEETTH
T ss_pred ccccccCeEeecccccc--cccccc---cccchhHHHHHHHHHHhCCCHHHhccceEEEEecCCCeEecCchhhhhccCc
Confidence 99999999998752100 000111 1357889999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCCChhHHHHHhhc
Q 009941 306 DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQ 385 (522)
Q Consensus 306 Dnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~~~~~~~~~l~~ 385 (522)
|||+|||++|+||++.... .+.+.+.+.++++||||||||.|+|||.|+|++++|+||..+++. +.+.+++++++
T Consensus 235 Dnl~s~~a~l~Al~~~~~~--~~~~~~~~~v~~~fD~EEiGS~s~~GA~S~fl~~~l~ri~~~~~~---~~~~~~~~l~~ 309 (432)
T PF02127_consen 235 DNLASCYAALEALIDSSND--SLEPEDGTNVVVLFDNEEIGSESRQGADSPFLEDVLERILAALGG---SREFYRRILAN 309 (432)
T ss_dssp HHHHHHHHHHHHHHHHTSS--CCCCSSSEEEEEEESSGGGTSTSTTSTTSTHHHHHHHHHHHHCST---TTHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhhhcc--cccccCceEEEEEEcccccCCCccccccchHHHHHHHHHHHhcCC---CHHHHHHHhhc
Confidence 9999999999999998542 222345789999999999999999999999999999999999875 55777888999
Q ss_pred cceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHH
Q 009941 386 SFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGP 465 (522)
Q Consensus 386 S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~ 465 (522)
||+||+||+||+||||+++||++|+|.||+|||||+++||||+||..+.++++++|+++|||||.|++|+|++|||||||
T Consensus 310 S~~lSaD~aHa~HPny~~~~d~~~~p~l~~G~viK~~a~q~yatd~~~~a~~~~i~~~~~ip~Q~f~~r~d~~~GsTiGp 389 (432)
T PF02127_consen 310 SFLLSADVAHAVHPNYPEKHDPNNQPLLNKGPVIKKNANQRYATDAASAAVFREICEKAGIPWQEFVNRSDDPGGSTIGP 389 (432)
T ss_dssp -EEEEE--EEB-BTTSGGGS-TTTSBSTTS-EEEESETTTTSSS-HHHHHHHHHHHHHHH--EEEEESSSTSSS--HHHH
T ss_pred CcEECcCcccccCCCcchhccccCCCcCCcccEEEEeCCCCcccCHHHHHHHHHHHHHcCCCeEEEEecCCCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHH
Q 009941 466 ILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 466 i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
|+++++||+|||||+|||+|||+|||++++|++++++++++||
T Consensus 390 i~sa~~gi~tvDiG~P~LsMHS~rE~~g~~D~~~~~~~~~aFf 432 (432)
T PF02127_consen 390 ILSARLGIRTVDIGIPQLSMHSIRETAGKKDIYYLYKAFKAFF 432 (432)
T ss_dssp HHHHCCTSEEEEEE-EEESTTSSSEEEEHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCEEEechhhhhcccHHHHhccccHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999997
No 5
>PRK02813 putative aminopeptidase 2; Provisional
Probab=100.00 E-value=2.5e-119 Score=957.74 Aligned_cols=424 Identities=47% Similarity=0.801 Sum_probs=402.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~A 136 (522)
.++++++|++||++||||||||++++++|+++||++|+|++.|+++||+|||++|+|++|+||.+|+++.+++|++|++|
T Consensus 4 ~~~~~~~~~~fl~~s~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~a 83 (428)
T PRK02813 4 ARAFAQDLLDFIDASPSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGA 83 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999988655579999999
Q ss_pred eccCCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCceEEEeeecCCCeEEcCCCCcccccc
Q 009941 137 HTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRT 216 (522)
Q Consensus 137 H~Dspg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~~~~~lv~~~~pv~vIp~laiHL~~~ 216 (522)
|+|||||+|||||.++++||++|+|++|||++|+|||||||+|||||++++++ +++.+|+++++|+++||+|||||+++
T Consensus 84 H~DsP~l~lKp~~~~~~~g~~~l~ve~YGG~~~~tW~Dr~L~laGrV~~~~~~-~~~~~l~~~~~pv~~Ip~LaiHL~~~ 162 (428)
T PRK02813 84 HTDSPGLRVKPNPDTGEAGYLQLNVEVYGGPILNTWLDRDLSLAGRVVLRDGN-KPESRLVNIDRPILRIPNLAIHLNRE 162 (428)
T ss_pred eccCCCeeeccCCcccCCCEEEEeeEECCCchhccccCCCcccceEEEEecCC-EeEEEEEeCCCCeEEeCcchhccCcc
Confidence 99999999999999999999999999999999999999999999999999864 89999999999999999999999999
Q ss_pred cccCCCCCCcccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEEeEeeecCCcccccCC
Q 009941 217 VNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGAN 296 (522)
Q Consensus 217 ~~~~~~~~n~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~ 296 (522)
+| +++++|+|.+|.|+++... +.++..+++++++++||++||+++||++|+|+||++++|++
T Consensus 163 ~~-~g~~~n~~~~~~Pi~~~~~-----------------~~~~~~~l~~la~~~gi~~~Div~~dl~~~d~~~~~~~G~~ 224 (428)
T PRK02813 163 VN-EGLKLNPQKHLLPILLNGV-----------------GEKEGDFLELLAEELGVDADDILDFDLFLYDTQPGALIGAN 224 (428)
T ss_pred cc-cccCcccccCCcceecccc-----------------cccchHHHHHHHHHcCCCcCCEEEEEEEEEEcccceeeccC
Confidence 88 7899999999999974311 12346799999999999999999999999999999999999
Q ss_pred CCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCCCh
Q 009941 297 NEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSE 376 (522)
Q Consensus 297 ~e~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~~~ 376 (522)
++||+|+|||||+|||++++||+++.+ +.+.++++||||||||+|++||.++|++++|+||+.+++. ++
T Consensus 225 ~e~i~s~~lDnr~~~~~~l~al~~~~~--------~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~---~~ 293 (428)
T PRK02813 225 GEFISSGRLDNLSSCHAGLEALLAAAS--------DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGG---DR 293 (428)
T ss_pred CCEEEEecchhHHHHHHHHHHHHhcCC--------CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcC---ch
Confidence 999999999999999999999998731 3478999999999999999999999999999999998875 77
Q ss_pred hHHHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeccC
Q 009941 377 TSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRND 456 (522)
Q Consensus 377 ~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D 456 (522)
+++++++++|++||+||+||.||||+++|++.|.++||+||+||++++|+|+||+.+.++++++|+++|||||.++.|+|
T Consensus 294 ~~~~~~i~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~v~~~d 373 (428)
T PRK02813 294 EDFLRALARSFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEFVNRSD 373 (428)
T ss_pred HHHHHhhCCCeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhh
Q 009941 457 MGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 510 (522)
Q Consensus 457 ~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~ 510 (522)
++||||+|+|++++.||||+|||+|+|||||+|||++++|++++++|+++||+.
T Consensus 374 ~~gGstig~i~~s~~Gi~tvdiGiP~l~MHS~~E~~~~~D~~~~~~l~~~f~~~ 427 (428)
T PRK02813 374 MPCGSTIGPITAARLGIRTVDVGAPMLAMHSARELAGVKDHAYLIKALTAFFSG 427 (428)
T ss_pred CCCccHHHHHHHhCCCCcEEEeChhhcccccHHHHccHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999964
No 6
>PRK02256 putative aminopeptidase 1; Provisional
Probab=100.00 E-value=9e-119 Score=957.27 Aligned_cols=451 Identities=24% Similarity=0.351 Sum_probs=410.8
Q ss_pred CCCccccCCCCCcccccccccccHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecC
Q 009941 34 SSNRYRPRTLHNFSTSGIAQSSSSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM 113 (522)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g 113 (522)
.+|.|++.++|. .++...+..+..++++|++||++||||||||++++++|+++||++|+|++ +++||+|||++|+|
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Fl~~sptp~Hav~~~~~~L~~~GF~el~e~~--~l~~g~kyy~~r~~ 78 (462)
T PRK02256 3 KKLTYKKKNAWE--KYSEEEKEEIFAFAEDYKDFLSKCKTEREAVKEIIELAEEKGFINLEEII--GLKPGDKVYAVNRG 78 (462)
T ss_pred ccccccccChhh--hCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeeccccc--ccCCCCEEEEEcCC
Confidence 456899999999 44444555577799999999999999999999999999999999999999 67899999999999
Q ss_pred cEEEEEEeCCcccCCCCceEEEEeccCCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCceE
Q 009941 114 SCLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFL 193 (522)
Q Consensus 114 ~~liAf~~G~~~~~~~g~~ii~AH~Dspg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~~~ 193 (522)
++||||.+|+++ +++||+|++||||||||||||||..+++||.+|+||+|||++|+|||||||+|||||+++++. ++.
T Consensus 79 ssliAf~ig~~~-~~~g~~iv~aHtDsP~lklKP~~~~~~~g~~~l~ve~YGG~l~~tW~DRdL~lAGrV~~~~~~-~~~ 156 (462)
T PRK02256 79 KSVALAVIGKEP-LEEGLNIIGAHIDSPRLDLKPNPLYEDEGLALLKTHYYGGIKKYQWVAIPLALHGVVVKKDGT-KVE 156 (462)
T ss_pred CEEEEEEeCCCC-CCCceEEEEEecCCCCceecCCCccccCCeeEeCeEecCCcccccccCCCceeeeEEEEecCC-EEE
Confidence 999999999874 468999999999999999999999999999999999999999999999999999999999732 466
Q ss_pred EEe-eecCCCeEEcCCCCccccccccc-CCCCCCcccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcC
Q 009941 194 HKL-VKVKRPLLRVPTLAIHLDRTVNK-DGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELG 271 (522)
Q Consensus 194 ~~l-v~~~~pv~vIp~laiHL~~~~~~-~~~~~n~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~g 271 (522)
.++ +++++|+++||+|||||+|+.|. +++++|+|+||.|++|..+.+. ++ .++|+..|++++++++|
T Consensus 157 ~~l~~~~~~pi~~IP~LAiHl~r~~n~~~~~~~n~q~~l~pi~~~~~~~~-------~~----~~~~~~~ll~~la~~~~ 225 (462)
T PRK02256 157 IVIGEDENDPVFTISDLLPHLAKDQMEKKASEAIEGEKLNILIGSIPLED-------EE----KEKVKLNILKLLNEKYG 225 (462)
T ss_pred EEecccCCCCeEEcCchhhhhCchhhhccccccCccCCcceeeccCCccc-------cc----cccchHHHHHHHHHHhC
Confidence 777 78999999999999999999762 3689999999999999764221 10 13467889999999999
Q ss_pred CCCCceeEEEeEeeecCCcccccCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 272 CGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 272 V~~gDiv~~dl~l~d~~~~~~~Gl~~e~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
|+++||++|||++||+||++++|+++|||+|+|||||+|||++++||+++.+ .+.+.++++||||||||+|++
T Consensus 226 v~~~dI~~~DL~l~d~q~~~~~G~~~efI~s~rLDNr~~~~~~leal~~~~~-------~~~~~~~~~~dqEEVGs~ga~ 298 (462)
T PRK02256 226 ITEEDFVSAELEVVPAGKARDVGLDRSLIGAYGQDDRVCAYTSLEALLELEN-------PEKTAVVLLVDKEEIGSEGNT 298 (462)
T ss_pred CCHHHeeeceEEEecCCCcceeccccceeeccccccHHHHHHHHHHHHhccc-------CCCeEEEEEEcccccCCcchh
Confidence 9999999999999999999999999999999999999999999999998742 245789999999999999999
Q ss_pred ccCCccHHHHHHHHHHhcCCCCCChhHHHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEE-E-cCCCCccc
Q 009941 352 GAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIK-H-NANQRYAT 429 (522)
Q Consensus 352 gA~s~~l~dvl~ri~~~~~~~~~~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk-~-~~~~~y~t 429 (522)
||+|.|++++|+||...++. ..+++++.+++++|++||+||+||.||||++++++.|.|.||+||+|| + +++|+|+|
T Consensus 299 gA~s~~l~~~l~Ri~~~~~p-d~~~~~~~~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~t 377 (462)
T PRK02256 299 GAQSRFFENFVAELLAKTEG-NYSDLKLRRALANSKALSADVSAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYGA 377 (462)
T ss_pred hhcchhHHHHHHHHHHhcCC-CcchHHHHHHHhccEEEEEeCCCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCcccc
Confidence 99999999999999987753 125678999999999999999999999999999999999999999996 6 59999999
Q ss_pred ---CHHHHHHHHHHHHHCCCCeeEE-EeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHH
Q 009941 430 ---SGVTAFLFKEIAKLHNLPTQEF-VVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFK 505 (522)
Q Consensus 430 ---~~~~~a~l~~ia~~~gIp~Q~~-~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~ 505 (522)
|+.+.++++++|+++|||||.+ +.|||++||||+|++++ +.||||+|||+|+|||||+|||++++|++++++|++
T Consensus 378 ~~~~~~~~~~i~~iA~~~~Ip~Q~~~~~r~d~~~GgTig~~~s-~~Gi~tvdiGiP~l~MHS~rE~~~~~D~~~~~~ll~ 456 (462)
T PRK02256 378 NDANAEFVAEVRNLFNKNNVVWQTAELGKVDQGGGGTIAKFLA-NYGMEVIDCGVALLSMHSPFEIASKADIYETYKAYK 456 (462)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCcChHHHHHc-CCCCcEEEechhhhccccHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999996 66999999999999998 899999999999999999999999999999999999
Q ss_pred HHHhh
Q 009941 506 AFYES 510 (522)
Q Consensus 506 af~~~ 510 (522)
+||+.
T Consensus 457 ~f~~~ 461 (462)
T PRK02256 457 AFLEE 461 (462)
T ss_pred HHHhh
Confidence 99964
No 7
>PRK09864 putative peptidase; Provisional
Probab=100.00 E-value=2.8e-58 Score=478.60 Aligned_cols=338 Identities=17% Similarity=0.110 Sum_probs=279.5
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEecc
Q 009941 60 IVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTD 139 (522)
Q Consensus 60 ~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~D 139 (522)
+.++|++--.-|.-+-.+.+.+++.|+..++ ++++|+.| |+||.. |.+ ...+|++||||
T Consensus 5 ~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~d---------------ev~~D~~G-Nli~~~-g~~----~~kvml~AHmD 63 (356)
T PRK09864 5 LLQQLCEASAVSGDEQEVRDILINTLEPCVN---------------EITFDGLG-SFVARK-GNK----GPKVAVVGHMD 63 (356)
T ss_pred HHHHHHcCCCCCCchHHHHHHHHHHHHHhCC---------------EEEECCCC-CEEEEe-CCC----CcEEEEEeccc
Confidence 4566776666677777888888888877664 46778999 899975 522 12699999999
Q ss_pred CCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCc-eEEEeeecCCCeEEcCCCCcccccccc
Q 009941 140 SPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGS-FLHKLVKVKRPLLRVPTLAIHLDRTVN 218 (522)
Q Consensus 140 spg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~-~~~~lv~~~~pv~vIp~laiHL~~~~~ 218 (522)
++||+|+. |+++||+ +|.+.||+.+++ | ++++|.|++++|. + .|+|+.++||+.++.+
T Consensus 64 evG~mV~~---I~~~G~l--~~~~lGG~~~~~-----l-~~q~V~i~t~~g~~v----------~GVig~~~~H~~~~~~ 122 (356)
T PRK09864 64 EVGFMVTH---IDESGFL--RFTTIGGWWNQS-----M-LNHRVTIRTHKGVKI----------PGVIGSVAPHALTEKQ 122 (356)
T ss_pred ccCEEEEE---ECCCCeE--EEEeCCCcCccc-----c-CCCEEEEEeCCCCEE----------EEEEeCCccccCChhH
Confidence 99999997 9999995 579999955554 4 6889999887763 3 6999999999998765
Q ss_pred cCCCCCCcccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEEeEeeecCCcccccCCCC
Q 009941 219 KDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNE 298 (522)
Q Consensus 219 ~~~~~~n~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~e 298 (522)
++ +..+.++|++|+|+.+++ +++++||++||+++||..+.. ++++
T Consensus 123 ~~--k~~~~~~l~IDiGa~s~e-------------------------e~~~~GV~vGD~v~~~~~~~~--------l~~~ 167 (356)
T PRK09864 123 KQ--QPLSFDEMFIDIGANSRE-------------------------EVEKRGVEIGDFISPEANFAC--------WGED 167 (356)
T ss_pred cc--cCCChhHEEEEeCCCCHH-------------------------HHHhcCCCCCCEEEECCCcEE--------EcCC
Confidence 33 566779999999998764 578899999999999988855 3577
Q ss_pred eeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCCChhH
Q 009941 299 FIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETS 378 (522)
Q Consensus 299 ~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~~~~~ 378 (522)
++.|++||||+|||+++++|..+++ .+...+++|++|||||.|||+.|+..+.|
T Consensus 168 ~i~~kalDnR~g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~i~P------------------- 221 (356)
T PRK09864 168 KVVGKALDNRIGCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEHIKP------------------- 221 (356)
T ss_pred EEEEEeCccHHHHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhcCCC-------------------
Confidence 8999999999999999999988742 24568899999999999999999988655
Q ss_pred HHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeccCCC
Q 009941 379 FECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMG 458 (522)
Q Consensus 379 ~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~ 458 (522)
+++|++|++++.+. |+........+||+||+|+.++++ .++|+.+.++++++|+++|||||..+.. +
T Consensus 222 -------DiaIavDvt~~~d~--p~~~~~~~~~~lG~Gp~i~~~D~~-~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~---~ 288 (356)
T PRK09864 222 -------DVVIVLDTAVAGDV--PGIDNIKYPLKLGQGPGLMLFDKR-YFPNQKLVAALKSCAAHNDLPLQFSTMK---T 288 (356)
T ss_pred -------CEEEEEecccCCCC--CCCcccccccccCCCCeEEEccCC-ccCCHHHHHHHHHHHHHcCCCceEEEcC---C
Confidence 48999999999762 222222235789999999988776 7889999999999999999999997741 2
Q ss_pred CCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhhccc
Q 009941 459 CGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 513 (522)
Q Consensus 459 gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~~~~ 513 (522)
||++.+.++.++.|+||+.||+|+||||||.||++++|++++++|+.+|++++..
T Consensus 289 ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~~~Ll~~~~~~l~~ 343 (356)
T PRK09864 289 GATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLIRDFLTTLTA 343 (356)
T ss_pred CCchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHHHHHHHHHHHhcch
Confidence 4555778899999999999999999999999999999999999999999987643
No 8
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-56 Score=461.20 Aligned_cols=343 Identities=22% Similarity=0.189 Sum_probs=284.3
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEe
Q 009941 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (522)
Q Consensus 58 ~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH 137 (522)
.++.++|++--.-|.-+..+.+++++.|++.+ +++.+|+.| ||||.+.|++ +...+||+||
T Consensus 5 ~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~---------------~ev~~D~lG-nlia~~~g~~---g~~~imi~AH 65 (355)
T COG1363 5 LELLKELLEAPGPSGYEEEVRDVLKEELEPLG---------------DEVEVDRLG-NLIAKKGGKN---GPPKVMIAAH 65 (355)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhC---------------CceEEcCCC-cEEEEecCCC---CCccEEEEee
Confidence 34555555555555566667777777766655 568899999 9999876622 1224999999
Q ss_pred ccCCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCceEEEeeecCCCeEEcCCCCccccccc
Q 009941 138 TDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTV 217 (522)
Q Consensus 138 ~Dspg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~~~~~lv~~~~pv~vIp~laiHL~~~~ 217 (522)
||++||+||. |+++|++ ++.++|||++.++ +++||.+.+++|+. ..|+|++.+||+.++.
T Consensus 66 mDEiG~mV~~---I~~~G~L--r~~~IGG~~~~~~------~gq~v~i~t~~g~~---------i~GvIg~~p~H~~~~~ 125 (355)
T COG1363 66 MDEIGFMVKE---IEDDGFL--RFVPIGGWDPQVL------EGQRVTIHTDKGKK---------IRGVIGSKPPHLLKEE 125 (355)
T ss_pred cceeeeeEEE---ECCCceE--EEEEcCCcChhhc------cCcEEEEEeCCCcE---------EeeeEcccCccccCcc
Confidence 9999999997 9999995 5799999766665 68899999888732 2699999999999754
Q ss_pred -ccCCCCCCcccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEEeEeeecCCcccccCC
Q 009941 218 -NKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGAN 296 (522)
Q Consensus 218 -~~~~~~~n~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~ 296 (522)
.++ +..+.++|++|+|+.+++ +++++||++||+++||..+... +
T Consensus 126 ~~~~--~~~~~~el~iDiga~ske-------------------------ea~~lGI~vGd~v~~~~~~~~l--------~ 170 (355)
T COG1363 126 AERK--KPPEWDELFIDIGASSKE-------------------------EAEELGIRVGDFVVFDPRFREL--------A 170 (355)
T ss_pred cccc--CCCchhhEEEECCcCCHH-------------------------HHHhcCCCCCCEEEEcCceEEe--------c
Confidence 322 446779999999998864 6889999999999999988874 5
Q ss_pred CCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCCCh
Q 009941 297 NEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSE 376 (522)
Q Consensus 297 ~e~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~~~ 376 (522)
+++|.|++||||+||+++|+++.++... ..+.+.++++++|||||.+||+.++..+.||
T Consensus 171 ~~~i~skalDdR~gva~lle~lk~l~~~-----~~~~~vy~v~tvqEEVGlrGA~~~a~~i~pd---------------- 229 (355)
T COG1363 171 NGRVVSKALDDRAGVAALLELLKELKGI-----ELPADVYFVASVQEEVGLRGAKTSAFRIKPD---------------- 229 (355)
T ss_pred CCcEEeeeccchHhHHHHHHHHHHhccC-----CCCceEEEEEecchhhccchhhccccccCCC----------------
Confidence 6899999999999999999999998421 2356789999999999999999999886555
Q ss_pred hHHHHHhhccceEEEecCCCCC-CCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEecc
Q 009941 377 TSFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRN 455 (522)
Q Consensus 377 ~~~~~~l~~S~~IS~DvahA~h-Pn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~ 455 (522)
++|++|++++.+ |..+ ....+||+||+|+..+++ ...|+.+..+|.++|+++|||||.++.+
T Consensus 230 ----------~aiavd~~~~~d~~~~~-----~~~~~lg~Gp~i~~~D~~-~~~~~~l~~~L~~~A~~~~Ip~Q~~v~~- 292 (355)
T COG1363 230 ----------IAIAVDVTPAGDTPGVP-----KGDVKLGKGPVIRVKDAS-GIYHPKLRKFLLELAEKNNIPYQVDVSP- 292 (355)
T ss_pred ----------EEEEEecccccCCCCCc-----ccccccCCCCEEEEEcCC-CCCCHHHHHHHHHHHHHcCCCeEEEecC-
Confidence 899999999987 5544 346799999999998776 5669999999999999999999999853
Q ss_pred CCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhhcccc
Q 009941 456 DMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSI 514 (522)
Q Consensus 456 D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~~~~~ 514 (522)
.|||+.+.++.++.||||+.||+|+|||||+.|+++.+|++++++|+.+|++++...
T Consensus 293 --~ggTDA~a~~~~g~gvpta~Igip~ry~Hs~~e~~~~~D~~~~~~Ll~~~i~~~~~~ 349 (355)
T COG1363 293 --GGGTDAGAAHLTGGGVPTALIGIPTRYIHSPVEVAHLDDLEATVKLLVAYLESLDRE 349 (355)
T ss_pred --CCCccHHHHHHcCCCCceEEEecccccccCcceeecHHHHHHHHHHHHHHHHhcchh
Confidence 245557799999999999999999999999999999999999999999999986643
No 9
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=100.00 E-value=1.9e-55 Score=457.72 Aligned_cols=338 Identities=12% Similarity=0.045 Sum_probs=274.0
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEecc
Q 009941 60 IVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTD 139 (522)
Q Consensus 60 ~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~D 139 (522)
+-++|++--.-|.-+-.+.+.+++.|++.|+ ++++|+.| |++|...|+.. +.+.+|+.||||
T Consensus 3 ~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~---------------~v~~D~~G-Nvia~~~g~~~--~~~~vml~AHmD 64 (350)
T TIGR03107 3 KIKEVTELQGTSGFEHPIRDYLRQDITPLVD---------------QVETDGLG-GIFGIKESQVE--NAPRVMVAAHMD 64 (350)
T ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHhhCC---------------EEEECCCC-CEEEEecCCCC--CCCEEEEEeccc
Confidence 3456666666666777788888888877664 46788999 99998655311 123699999999
Q ss_pred CCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCc-eEEEeeecCCCeEEcCCCCcccccccc
Q 009941 140 SPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGS-FLHKLVKVKRPLLRVPTLAIHLDRTVN 218 (522)
Q Consensus 140 spg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~-~~~~lv~~~~pv~vIp~laiHL~~~~~ 218 (522)
++||+|+. |+++||+ ++.+.||+++++ | ++++|.+.+++|+ + .|+|+.++||+.++.+
T Consensus 65 eVGf~V~~---I~~~G~l--~~~~vGG~~~~~-----l-~gq~V~i~t~~g~~i----------~GViG~~~~Hl~~~~~ 123 (350)
T TIGR03107 65 EVGFMVSQ---IKPDGTF--RVVELGGWNPLV-----V-SSQRFTLFTRKGKKY----------PVISGSVPPHLLRGSS 123 (350)
T ss_pred EeCEEEEE---ECCCceE--EEEeCCCccccc-----c-CCcEEEEEeCCCCEE----------EEEEeCCcccccChhh
Confidence 99999997 9999995 569999955544 4 7889999887774 3 6999999999987643
Q ss_pred -cCCCCCCcccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEEeEeeecCCcccccCCC
Q 009941 219 -KDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANN 297 (522)
Q Consensus 219 -~~~~~~n~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~ 297 (522)
++ +..+.++|++|+|+.+++ +++++||++||+|+|+..+.... ++
T Consensus 124 ~~~--~~~~~~~l~IDiGa~ske-------------------------e~~~~GI~vGd~v~~~~~~~~~~-------~~ 169 (350)
T TIGR03107 124 GGP--QLPAVSDILFDGGFTNKD-------------------------EAWSFGVRPGDVIVPQTETILTA-------NG 169 (350)
T ss_pred ccc--ccCChhhEEEEeCCCCHH-------------------------HHHhcCCCCCCEEEECCCeEEEc-------CC
Confidence 22 455679999999998864 57889999999999998886531 45
Q ss_pred CeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCCChh
Q 009941 298 EFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSET 377 (522)
Q Consensus 298 e~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~~~~ 377 (522)
+++.|++||||+|||++++++.++++. +.+...+++|++|||||.|||+.|++.+.|
T Consensus 170 ~~i~~kalDdR~g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~~i~p------------------ 226 (350)
T TIGR03107 170 KNVISKAWDNRYGVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTTKFNP------------------ 226 (350)
T ss_pred CEEEEeccccHHHHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHhhCCC------------------
Confidence 679999999999999999999988642 124567889999999999999999877544
Q ss_pred HHHHHhhccceEEEecCCCCC-CCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeccC
Q 009941 378 SFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRND 456 (522)
Q Consensus 378 ~~~~~l~~S~~IS~DvahA~h-Pn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D 456 (522)
+++|++|++++.+ |+.. + ..||+||+|+..+++ ...|+.+.++++++|+++|||||. ..
T Consensus 227 --------D~aI~vDv~~~~d~~~~~------~-~~lg~Gp~i~~~D~~-~i~~~~l~~~l~~~A~~~~I~~Q~-~~--- 286 (350)
T TIGR03107 227 --------DIFFAVDCSPAGDIYGDQ------G-GKLGEGTLLRFFDPG-HIMLPRMKDFLLTTAEEAGIKYQY-YV--- 286 (350)
T ss_pred --------CEEEEEecCCcCCCCCCC------c-cccCCCceEEEecCC-CCCCHHHHHHHHHHHHHcCCCcEE-ec---
Confidence 5999999999875 3221 1 689999999988776 788999999999999999999998 42
Q ss_pred CCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhhccc
Q 009941 457 MGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 513 (522)
Q Consensus 457 ~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~~~~ 513 (522)
.+||++.+.++.++.|+||+.||+|+|||||+.|+++.+|++.+++|+.+|++.+..
T Consensus 287 ~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~Ll~~~i~~l~~ 343 (350)
T TIGR03107 287 AKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAAQAFLQAIVKKLDR 343 (350)
T ss_pred CCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHHHHHHHHHHHHHhcCH
Confidence 234444557788889999999999999999999999999999999999999987643
No 10
>PRK09961 exoaminopeptidase; Provisional
Probab=100.00 E-value=1.7e-54 Score=450.78 Aligned_cols=332 Identities=14% Similarity=0.066 Sum_probs=271.4
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEec
Q 009941 59 SIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHT 138 (522)
Q Consensus 59 ~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~ 138 (522)
++-++|++.-.-|..+-.+.+.+++.|++.|+. +.+|++| |++|...|++ .+.+|+.|||
T Consensus 4 ~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~---------------v~~D~~G-nvi~~~~g~~----~~~v~l~aHm 63 (344)
T PRK09961 4 SLLKALSEADAIASSEQEVRQILLEEADRLQKE---------------VRFDGLG-SVLIRLNEST----GPKVMICAHM 63 (344)
T ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCE---------------EEECCCC-CEEEEEcCCC----CCEEEEEecc
Confidence 356778887778888888888899998887753 4568888 8999654522 2269999999
Q ss_pred cCCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCceEEEeeecCCCeEEcCCCCcccccccc
Q 009941 139 DSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVN 218 (522)
Q Consensus 139 Dspg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~~~~~lv~~~~pv~vIp~laiHL~~~~~ 218 (522)
|++||+|+. |+++||+ ++.++||+.++.+ +++||.+.+++|+. ..|+|. ..+
T Consensus 64 Devg~~V~~---I~~~G~l--~~~~vGG~~~~~~------~~~~v~i~~~~g~~---------i~Gvi~--------~~~ 115 (344)
T PRK09961 64 DEVGFMVRS---ISREGAI--DVLPVGNVRMAAR------QLQPVRITTREECK---------IPGLLN--------GDR 115 (344)
T ss_pred ceeceEEEE---ECCCceE--EEEeCCCcccccc------CCCEEEEEeCCCCE---------eeEEEC--------hhh
Confidence 999999997 9999995 5699999655554 68899998877641 257771 111
Q ss_pred cCCCCCCcccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEEeEeeecCCcccccCCCC
Q 009941 219 KDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNE 298 (522)
Q Consensus 219 ~~~~~~n~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~e 298 (522)
+ + .+.++|++|+|+.+++ +++++||++||+++||..+... +++
T Consensus 116 -~--~-~~~~~l~iDiG~~s~e-------------------------e~~~~GI~~Gd~v~~~~~~~~~--------~~~ 158 (344)
T PRK09961 116 -Q--G-NDVSAMRVDIGARSYD-------------------------EVMQAGIRPGDRVTFDTTFQVL--------PHQ 158 (344)
T ss_pred -c--C-CCHHHEEEEcCCCCHH-------------------------HHHhcCCCCCCEEEEcceeEEe--------cCC
Confidence 1 3 4568999999998754 5778999999999999999874 467
Q ss_pred eeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCCChhH
Q 009941 299 FIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETS 378 (522)
Q Consensus 299 ~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~~~~~ 378 (522)
++.|++||||+|||+++++|+++++. +.....++++|+|||||+||+++|++.+.
T Consensus 159 ~i~gkalDnR~g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i~-------------------- 213 (344)
T PRK09961 159 RVMGKAFDDRLGCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAVS-------------------- 213 (344)
T ss_pred EEEEeechhhHhHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhccC--------------------
Confidence 89999999999999999999988542 12445778999999999999999998854
Q ss_pred HHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeccCCC
Q 009941 379 FECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMG 458 (522)
Q Consensus 379 ~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~ 458 (522)
++++|++|+++ +|++++ .+..+.++||+||+|+.++. ++++|+.+.++++++|++++||+|..+. .+
T Consensus 214 ------pd~~I~vDv~~--~~d~~~-~~~~~~~~lg~Gp~i~~~D~-~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~---~g 280 (344)
T PRK09961 214 ------PDVAIVLDTAC--WAKNFD-YGAANHRQIGNGPMLVLSDK-SLIAPPKLTAWIETVAAEIGIPLQADMF---SN 280 (344)
T ss_pred ------CCEEEEEeccC--CCCCCC-CCCCcccccCCCceEEEccC-CcCCCHHHHHHHHHHHHHcCCCcEEEec---CC
Confidence 45999999997 566666 33445689999999998854 5999999999999999999999998653 23
Q ss_pred CCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhhccc
Q 009941 459 CGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 513 (522)
Q Consensus 459 gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~~~~ 513 (522)
||++++.++.++.|+||+++|+|+|||||++|+++++|++.+++|+.+|++.+..
T Consensus 281 gGTDa~~~~~~~~Giptv~ig~p~ry~Hs~~E~v~~~D~~~~~~Ll~~~i~~l~~ 335 (344)
T PRK09961 281 GGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMIQLLSALIQRLTR 335 (344)
T ss_pred CcchHHHHHHhCCCCCEEEechhhhcccChhheEEHHHHHHHHHHHHHHHHHcCH
Confidence 5566788988889999999999999999999999999999999999999977643
No 11
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=100.00 E-value=8.9e-53 Score=428.50 Aligned_cols=290 Identities=24% Similarity=0.243 Sum_probs=227.5
Q ss_pred EEEEEEeCCcccCCCCceEEEEeccCCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCceEE
Q 009941 115 CLVAFAVGQKYSVGNGFHIIAAHTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLH 194 (522)
Q Consensus 115 ~liAf~~G~~~~~~~g~~ii~AH~Dspg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~~~~ 194 (522)
||||.+.|.+ +...+||.|||||+||+|+. |+++||+ +|.+.||+.++.+ ++++|.+.+++|.+
T Consensus 2 nvi~~~~g~~---~~~~vmi~AHmDEiG~iV~~---I~~~G~l--~~~~lGg~~~~~l------~gq~v~i~~~~g~i-- 65 (292)
T PF05343_consen 2 NVIARKKGKE---GGPKVMIAAHMDEIGFIVRH---IDDDGFL--RFVPLGGIDPRVL------PGQRVRIHTRDGDI-- 65 (292)
T ss_dssp -EEEEECSSC---SSSEEEEEEE--B-EEEEEE---EETTSEE--EEEEESS--GGGT------TTEEEEEEETTEEE--
T ss_pred cEEEEECCCC---CCceEEEEEccceeeEEEEE---ECCCCEE--EEEEcCCcCcccc------CCCEEEEEcCCcEE--
Confidence 8999887722 23369999999999999996 9999995 5799999776665 67888888877744
Q ss_pred EeeecCCCeEEcCCCCcccccccccCCCCCCcccceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCC
Q 009941 195 KLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGT 274 (522)
Q Consensus 195 ~lv~~~~pv~vIp~laiHL~~~~~~~~~~~n~~~~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~ 274 (522)
.|+|..++||+.++.+++ +..+.++|++|+|+.+++ +++++||++
T Consensus 66 --------~Gvig~~~~H~~~~~~~~--~~~~~~~l~iDiGa~s~e-------------------------e~~~~GV~i 110 (292)
T PF05343_consen 66 --------PGVIGSKPPHLQSEEERK--KVPKWDDLFIDIGASSKE-------------------------EVEELGVRI 110 (292)
T ss_dssp --------EEEEEE--GGGCCHHHHH--STTEGGGEEEECSGSSHH-------------------------HHHHTTS-T
T ss_pred --------EEEEcCCCCcccChhhcc--cCCCcceEEEEeccCCHH-------------------------HHHhCCCCC
Confidence 699999999999865433 445579999999998764 578999999
Q ss_pred CceeEEEeEeeecCCcccccCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccC
Q 009941 275 DDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAG 354 (522)
Q Consensus 275 gDiv~~dl~l~d~~~~~~~Gl~~e~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~ 354 (522)
||+++||..+... ++.+|.|++||||+|||+++++|..+++. . .+...+++|++|||||.||++.|+
T Consensus 111 Gd~v~~~~~~~~~--------~~~~i~gkalDdR~g~~~lle~l~~l~~~--~---~~~~v~~v~tvqEEvG~rGA~~aa 177 (292)
T PF05343_consen 111 GDPVVFDPPFREL--------GNGRIVGKALDDRAGCAVLLELLRELKEK--E---LDVDVYFVFTVQEEVGLRGAKTAA 177 (292)
T ss_dssp T-EEEES---EEE--------TTTEEEETTHHHHHHHHHHHHHHHHHTTS--S----SSEEEEEEESSCTTTSHHHHHHH
T ss_pred CCEEeecCCeEEe--------CCCEEEEEeCCchhHHHHHHHHHHHHhhc--C---CCceEEEEEEeeeeecCcceeecc
Confidence 9999999998873 46779999999999999999999998653 1 236788999999999999999887
Q ss_pred CccHHHHHHHHHHhcCCCCCChhHHHHHhhccceEEEecCCCCC-CCCCcccccCCCCcCCCccEEEEcCCCCcccCHHH
Q 009941 355 APTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVT 433 (522)
Q Consensus 355 s~~l~dvl~ri~~~~~~~~~~~~~~~~~l~~S~~IS~DvahA~h-Pn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~ 433 (522)
.. +.++++|++|++++.+ |..++. ...||+||+|++.+.. ...|+.+
T Consensus 178 ~~--------------------------i~PD~ai~vD~~~a~d~~~~~~~-----~~~lG~Gp~i~~~D~~-~i~~~~l 225 (292)
T PF05343_consen 178 FR--------------------------IKPDIAIAVDVTPAGDTPGSDEK-----EQGLGKGPVIRVGDSS-MIPNPKL 225 (292)
T ss_dssp HH--------------------------H-CSEEEEEEEEEESSSTTSTTT-----TSCTTS-EEEEEEETT-EESHHHH
T ss_pred cc--------------------------cCCCEEEEEeeeccCCCCCCchh-----hccCCCCcEEEEccCC-CCCCHHH
Confidence 55 4566999999999986 444332 1229999999999776 7889999
Q ss_pred HHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHH
Q 009941 434 AFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRH 503 (522)
Q Consensus 434 ~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l 503 (522)
.++++++|++++||||..+.+ .||++.+.++.++.|+||+.||+|+|||||+.|+++++|++++++|
T Consensus 226 ~~~l~~~A~~~~Ip~Q~~~~~---~ggTDa~~~~~~~~Gi~t~~i~iP~ry~Hs~~e~~~~~Di~~~~~L 292 (292)
T PF05343_consen 226 VDKLREIAEENGIPYQREVFS---GGGTDAGAIQLSGGGIPTAVISIPCRYMHSPVEVIDLDDIEATIDL 292 (292)
T ss_dssp HHHHHHHHHHTT--EEEEEES---SSSSTHHHHHTSTTSSEEEEEEEEEBSTTSTTEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEecC---CcccHHHHHHHcCCCCCEEEEecccccCCCcceEEEHHHHHHHhhC
Confidence 999999999999999997642 3444566889999999999999999999999999999999999986
No 12
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=100.00 E-value=1.2e-50 Score=421.32 Aligned_cols=332 Identities=18% Similarity=0.107 Sum_probs=269.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~A 136 (522)
+.++.++|+++-.-|..+..+.+.+++.|++.||+ +.+|+.| |++|...|... ...+|+.|
T Consensus 5 ~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~e---------------v~~D~~G-nlia~~~g~~~---~~~v~l~a 65 (343)
T TIGR03106 5 LTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIE---------------YELTRRG-AIRATLPGREA---TPARAVVT 65 (343)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCe---------------EEECCCe-EEEEEECCCCC---CCeEEEEE
Confidence 44566788887777778888999999999888873 3357778 99998766321 23699999
Q ss_pred eccCCCceeccCCccCCCCeEEEEEEEecCccccccccceeccccEEEEECCCCceEEEeeecCCCeEEc-C-CCCcccc
Q 009941 137 HTDSPCLKLKPKSASSKSGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRV-P-TLAIHLD 214 (522)
Q Consensus 137 H~Dspg~~VK~~~~i~~~G~~~l~v~~yGG~~~~tW~dR~L~laGrV~v~~~~G~~~~~lv~~~~pv~vI-p-~laiHL~ 214 (522)
|||++||+|+. |+++||+ +|.+.||+.+++. ++.+|.+.+++|++ .|+| + ..+||+.
T Consensus 66 HmDevG~~V~~---I~~~G~l--~~~~iGG~~~~~l------~g~~v~i~t~~g~~----------~Gvi~~~~~~~H~~ 124 (343)
T TIGR03106 66 HLDTLGAMVRE---LKDNGRL--ELVPIGHWSARFA------EGARVTIFTDSGEF----------RGTILPLKASGHAF 124 (343)
T ss_pred eeccccceeeE---ECCCCeE--EEEecCCCcccce------eCCEEEEEeCCCeE----------EEEECCCCCCCccC
Confidence 99999999996 9999995 5799999666653 67799998766544 6999 7 9999998
Q ss_pred cccccCCCCCCccc--ceeeeeeccCccccCCccccCCCCCCccCChhHHHHHHHHHcCCCCCceeEEEeEeeecCCccc
Q 009941 215 RTVNKDGFKPNLET--QLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCL 292 (522)
Q Consensus 215 ~~~~~~~~~~n~~~--~l~~~iG~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~ 292 (522)
++.+++ +..+.+ +|++|+|+.+++ +++++||++||+++|+..+..
T Consensus 125 ~~~~~~--~~~~~~~~~l~iDiG~~s~e-------------------------e~~~lGV~~Gd~v~~~~~~~~------ 171 (343)
T TIGR03106 125 NEEIDS--QPTGWDHVEVRVDARASCRA-------------------------DLVRLGISVGDFVAFDPQPEF------ 171 (343)
T ss_pred ChHHcc--CCCCCcccEEEEECCcCCHH-------------------------HHHHcCCCCCCEEEECCccEE------
Confidence 765432 455667 999999998864 578899999999999988765
Q ss_pred ccCCCCeeeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCC
Q 009941 293 GGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHE 372 (522)
Q Consensus 293 ~Gl~~e~I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~ 372 (522)
++++++.|+++|||+||+++++++..+..... ......+++|+.||||| +| ++..+.||+.
T Consensus 172 --~~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~---~~~~~v~~~~t~qEEvG-~g---aa~~i~pd~a---------- 232 (343)
T TIGR03106 172 --LANGFIVSRHLDDKAGVAALLAALKAIVEHKV---PLPVDVHPLFTITEEVG-SG---ASHALPPDVA---------- 232 (343)
T ss_pred --ecCCEEEEEecccHHhHHHHHHHHHHHHhcCC---CCCceEEEEEECCcccC-cc---chhcccHhhh----------
Confidence 34679999999999999999999988853210 12446788999999999 55 5566666521
Q ss_pred CCChhHHHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEE
Q 009941 373 HVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFV 452 (522)
Q Consensus 373 ~~~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~ 452 (522)
.+|++|++++ .|. ...||+||+|+..+++ +..|+.+.++++++|+++|||||+.+
T Consensus 233 --------------~~i~vd~~~~-~p~---------~~~lg~Gp~i~~~d~~-~~~~~~l~~~l~~~A~~~~Ip~Q~~~ 287 (343)
T TIGR03106 233 --------------ELVSVDNGTV-APG---------QNSSEHGVTIAMADSS-GPFDYHLTRKLIRLCQDHGIPHRRDV 287 (343)
T ss_pred --------------ccEEEEeccc-CCC---------CCcCCCCceEEEecCC-CCCCHHHHHHHHHHHHHcCCCcEEEe
Confidence 3499999997 332 2679999999988775 78899999999999999999999987
Q ss_pred eccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHh
Q 009941 453 VRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 509 (522)
Q Consensus 453 ~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~ 509 (522)
.. .+|++.+.++.++.||||+.||+|+||||| .|+++++|++++++|+.+|+.
T Consensus 288 ~~---~~gtDa~~~~~~~~Gi~t~~i~iP~Ry~Hs-~e~~~~~D~~~~~~Ll~~~~~ 340 (343)
T TIGR03106 288 FR---YYRSDAASAVEAGHDIRTALVTFGLDASHG-YERTHIDALEALANLLVAYAQ 340 (343)
T ss_pred cC---CCCChHHHHHHcCCCCCEEEeeccccchhh-hhhccHHHHHHHHHHHHHHhc
Confidence 41 245557788999999999999999999999 999999999999999999984
No 13
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=98.56 E-value=1.8e-05 Score=84.70 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=47.0
Q ss_pred CCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhhcc
Q 009941 459 CGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFS 512 (522)
Q Consensus 459 gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~~~ 512 (522)
.|||.+.+++. .|+|++.+|.-.-.+|++.|.+..+|++.+++++..+++.+.
T Consensus 355 ~ggtDa~~~~~-~Gip~~~~G~G~~~aHt~dE~v~i~~l~~~~~~~~~li~~~~ 407 (410)
T TIGR01882 355 RGGTDGSQLSY-MGLPTPNIFAGGENMHGRFEYISVDNMVKAVDVIVEIAKLNE 407 (410)
T ss_pred ceechHHHHHh-CCCCCCeEcCCcccCcCCceEEEHHHHHHHHHHHHHHHHHHh
Confidence 57888888865 799999999977779999999999999999999999987664
No 14
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.29 E-value=4.7e-06 Score=78.34 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=105.9
Q ss_pred CCeeeccCC-CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccc-ccccCCccHHHHHHHHHHhcCCCCC
Q 009941 297 NEFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS-YQGAGAPTMFQAIRRIVGSLAHEHV 374 (522)
Q Consensus 297 ~e~I~s~~L-Dnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~g-a~gA~s~~l~dvl~ri~~~~~~~~~ 374 (522)
++.+.|++. |+..++.+.+.|+..+.+.. ........++++..||+|+.. +. .++...
T Consensus 26 ~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~~~~i~~~~~~~EE~g~~~g~~------------~l~~~~----- 85 (189)
T PF01546_consen 26 DGRLYGRGADDMKGGIAAMLAALKALKESG---DDLPGNIIFLFTPDEEIGSIGGAK------------HLLEEG----- 85 (189)
T ss_dssp TTEEESTTTTTTHHHHHHHHHHHHHHHHTT---TTCSSEEEEEEESTCCGTSTTHHH------------HHHHHC-----
T ss_pred CCEEEcCCcCCCcccHHHHHHHHHHHHhcc---ccccccccccccccccCCCcchhh------------hhhhhc-----
Confidence 456767666 77888888888888764211 123556788999999999974 22 111110
Q ss_pred ChhHHHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCC-CeeEEEe
Q 009941 375 SETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNL-PTQEFVV 453 (522)
Q Consensus 375 ~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gI-p~Q~~~~ 453 (522)
....+..++++..|.+.. . .+. ...+..+...+++.+++.+. +......
T Consensus 86 ----~~~~~~~~~~~~~e~~~~------~-------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (189)
T PF01546_consen 86 ----AFFGLHPDYVIIGEPTGK------G-------------GVG-------SDNDPPLVQALQAAAQEVGGEPPEPVAS 135 (189)
T ss_dssp ----EEEEEEESEEEECECETT------S-------------EEE-------HCTCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ----cccccccccccccccccc------c-------------ccc-------ccccHHHHHHHHHHHHHHhhccccccce
Confidence 000022233333332221 0 000 23477799999999999987 5554443
Q ss_pred ccCCCCCCChHHHHhc--CCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhh
Q 009941 454 RNDMGCGSTIGPILAS--GVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 510 (522)
Q Consensus 454 r~D~~gGsTig~i~~s--~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~ 510 (522)
+|+|.+++++. ..|++++-+|.---.+|++.|-+..+|+...++++.+++++
T Consensus 136 -----~g~tD~~~~~~~~~~~~~~i~~G~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~n 189 (189)
T PF01546_consen 136 -----GGGTDAGFLAEVKGLGIPAIGFGPGGSNAHTPDEYIDIEDLVKGAKIYAALLEN 189 (189)
T ss_dssp -----SSSSTHHHHHCHHHTTEEEEEEESCEESTTSTT-EEEHHHHHHHHHHHHHHHHT
T ss_pred -----eccccchhhhhhhccccceeeeCCCCCCCCCCCcEecHHHHHHHHHHHHHHHhC
Confidence 56677766665 68999999999889999999999999999999999999864
No 15
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=97.27 E-value=0.0006 Score=71.29 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHh
Q 009941 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 509 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~ 509 (522)
|..+...+++.+++.|.+.+... .+|+|++.+++. .|||++.+|++...+||+.|.++.+|+...++++..+++
T Consensus 288 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~~~-~giP~v~~G~g~~~~Hs~~E~v~i~~~~~~~~~~~~~~~ 361 (361)
T TIGR01883 288 QHPLMNIFKKAAKKIGLKTSEIF-----SGGGSDANVLNE-KGVPTVNLSAGYVHAHTEKETISIEQLVKLAELVIALAE 361 (361)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEe-----cCcccHHHHHhh-CCCceEEECCCcccCcCcceeEEHHHHHHHHHHHHHHhC
Confidence 55778889999999999877532 257788877764 699999999999999999999999999999999998763
No 16
>PRK13381 peptidase T; Provisional
Probab=96.77 E-value=0.0035 Score=66.93 Aligned_cols=78 Identities=15% Similarity=0.037 Sum_probs=64.7
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
.|..+...+++.+++.|++.+... .+|+|++.++.. .|||++.+|++...+|++.|-++.+|++.+++++..++
T Consensus 326 ~~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~~GpG~~~aH~~dE~v~i~~l~~~~~v~~~~~ 399 (404)
T PRK13381 326 DDRRAVDLAFDAMKELGIEPKVIP-----MRGGTDGAALSA-KGLPTPNLFTGAHNFHSRFEFLPVSSFVKSYEVTITIC 399 (404)
T ss_pred cCHHHHHHHHHHHHHcCCCeeecc-----CCccchHHHHhc-CCCCeEEECccccCCcCcceeEEHHHHHHHHHHHHHHH
Confidence 367788888888888888866432 246677777654 69999999999999999999999999999999999998
Q ss_pred hhcc
Q 009941 509 ESFS 512 (522)
Q Consensus 509 ~~~~ 512 (522)
..+.
T Consensus 400 ~~~~ 403 (404)
T PRK13381 400 LLAA 403 (404)
T ss_pred HHhc
Confidence 7654
No 17
>PRK05469 peptidase T; Provisional
Probab=96.75 E-value=0.0036 Score=66.89 Aligned_cols=79 Identities=15% Similarity=0.024 Sum_probs=65.8
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
.|..+.+.+++.+++.|++.+... .+|+|.+.+.+. .|||++.+|++...+|++.|.+..+|+...++++..++
T Consensus 328 ~~~~lv~~~~~a~~~~g~~~~~~~-----~~ggtD~~~~~~-~giP~v~~gpG~~~~H~~~E~v~i~~l~~~~~~~~~~~ 401 (408)
T PRK05469 328 PHPHIVDLAKQAMEDLGIEPIIKP-----IRGGTDGSQLSF-MGLPCPNIFTGGHNFHGKFEFVSLESMEKAVEVIVEIA 401 (408)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEec-----CCCcccHHHHhh-CCCceEEECcCcccCcCcceeeEHHHHHHHHHHHHHHH
Confidence 367888999999999898876432 246777777654 79999999999989999999999999999999999998
Q ss_pred hhccc
Q 009941 509 ESFSS 513 (522)
Q Consensus 509 ~~~~~ 513 (522)
..|..
T Consensus 402 ~~~~~ 406 (408)
T PRK05469 402 ELTAE 406 (408)
T ss_pred HHHhc
Confidence 77643
No 18
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=96.56 E-value=0.0023 Score=67.28 Aligned_cols=45 Identities=18% Similarity=-0.084 Sum_probs=35.2
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQG 352 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~g 352 (522)
++.||..|+.++|+++..+.+. .......+++++.||+|+.|++-
T Consensus 140 GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~fv~~~~EE~Gl~GS~~ 184 (346)
T PRK10199 140 GMDDNAAGLGVMLELAERLKNV-----PTEYGIRFVATSGEEEGKLGAEN 184 (346)
T ss_pred CccccHHHHHHHHHHHHHHhhC-----CCCCcEEEEEECCcccCcHHHHH
Confidence 4579999999999998877532 12345788999999999987664
No 19
>PRK08554 peptidase; Reviewed
Probab=96.53 E-value=0.006 Score=66.20 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=66.1
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
.|..+.+.+++++++.|++.+... .+|+|.+.+++. .|+|++++|+---.||++.|-+..+++..+.+++..++
T Consensus 360 ~~~~lv~~~~~~~~~~g~~~~~~~-----~~GgtDa~~~~~-~Gip~v~~Gp~~~~~H~~~E~v~i~~l~~~~~i~~~~i 433 (438)
T PRK08554 360 PDEEIVKVALRVLKELGEDAEPVE-----GPGASDSRYFTP-YGVKAIDFGPKGGNIHGPNEYVEIDSLKKMPEVYKRIA 433 (438)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEe-----cCCchHHHHHHh-cCCCceEECCCCCCCCCCcceEEHHHHHHHHHHHHHHH
Confidence 377888999999999999877654 367899988875 79999999996678999999999999999999999988
Q ss_pred hhc
Q 009941 509 ESF 511 (522)
Q Consensus 509 ~~~ 511 (522)
..+
T Consensus 434 ~~l 436 (438)
T PRK08554 434 LRL 436 (438)
T ss_pred HHH
Confidence 654
No 20
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=96.25 E-value=0.0022 Score=60.27 Aligned_cols=154 Identities=14% Similarity=0.031 Sum_probs=84.8
Q ss_pred eeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCCChhHH
Q 009941 300 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSF 379 (522)
Q Consensus 300 I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~~~~~~ 379 (522)
.+-++.||-.||.++|+..+.+.+.. ..+.....+++|+.||.|..|++.-... .+..
T Consensus 20 ~~~GA~DnasGva~lLelAr~l~~~~---~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~~~------------------ 77 (179)
T PF04389_consen 20 WSPGANDNASGVAALLELARVLKELK---PQPKRTIRFVFFDGEEQGLLGSRAFVEH-DHEE------------------ 77 (179)
T ss_dssp SSS-TTTTHHHHHHHHHHHHHHHHST---HSSSEEEEEEEESSGGGTSHHHHHHHHH-HHCH------------------
T ss_pred ccCCcccchHHHHHHHHHHHHHHHhh---cccCccEEEEEecccccCccchHHHHHh-hhcc------------------
Confidence 55678999999999999877775310 1134567889999999998877633210 0010
Q ss_pred HHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEe-ccCCC
Q 009941 380 ECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVV-RNDMG 458 (522)
Q Consensus 380 ~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~-r~D~~ 458 (522)
.-.--++|..|+....++ .+...... .....+.+.+.++++.....++.... .....
T Consensus 78 --~~~~~~~inlD~~g~~~~------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (179)
T PF04389_consen 78 --LDNIAAVINLDMIGSGDP------------------TVYSEGSP--SLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTF 135 (179)
T ss_dssp --HHHEEEEEEECSSBSSSS------------------EEEEEEGG--GHHHHHHHHHHHHHHHHHCHTSSECEEEESST
T ss_pred --cccceeEEeccccccCcc------------------cceeeeec--cccchhhhhhhhhhhhhhcccccccccccCCC
Confidence 112236788887554222 11111111 00112445555554442222222111 12244
Q ss_pred CCCChHHHHhcCCCCcEEEeccc---cccccchhhhcCHHHHHH
Q 009941 459 CGSTIGPILASGVGIRTVDCGIA---QLSMHSVREICGTEDIDI 499 (522)
Q Consensus 459 gGsTig~i~~s~~Gi~tidiGiP---~l~MHS~~E~~~~~Dv~~ 499 (522)
++++--++. ..|||++.+.-= ..+-|++.-+.+.-|.+.
T Consensus 136 ~~sD~~~F~--~~gip~~~~~~~~~~~~~~Ht~~Dt~~~~~~~~ 177 (179)
T PF04389_consen 136 GGSDHYPFS--KAGIPAVTLSSTDGYNPYYHTPEDTPDNLDPDT 177 (179)
T ss_dssp TSSTCHHHH--TTT-EEEEEEESSSSGTTTTSTT-SGGGC-HHH
T ss_pred CCCCcHhhh--cCCEeEEEEEecCCCCCCCCCcccChhhcCCcc
Confidence 566666777 689999877543 366799988887776654
No 21
>PRK07338 hypothetical protein; Provisional
Probab=95.95 E-value=0.014 Score=62.15 Aligned_cols=78 Identities=15% Similarity=0.055 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEE-eccccccccchhhhcCHHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD-CGIAQLSMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tid-iGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
+..+...+++.+++.|++..... .+|+|.+.+++. .|||+++ +|.---.+|++.|-++.+|+...++++..++
T Consensus 321 ~~~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~~~Gpg~~~~H~~~E~v~i~~l~~~~~~~~~~l 394 (402)
T PRK07338 321 QQRLFEAVQACGAALGLTIDWKD-----SGGVCDGNNLAA-AGLPVVDTLGVRGGNIHSEDEFVILDSLVERAQLSALIL 394 (402)
T ss_pred hHHHHHHHHHHHHHcCCCccccc-----CCccchHHHHhh-cCCCeEeccCCCCCCCCCccceEehhhHHHHHHHHHHHH
Confidence 45688889999999998876432 367788877765 7999995 8886667899999999999999999999999
Q ss_pred hhccc
Q 009941 509 ESFSS 513 (522)
Q Consensus 509 ~~~~~ 513 (522)
..|.+
T Consensus 395 ~~~~~ 399 (402)
T PRK07338 395 MRLAQ 399 (402)
T ss_pred HHHhc
Confidence 87754
No 22
>PRK07473 carboxypeptidase; Provisional
Probab=95.93 E-value=0.011 Score=62.82 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEE-eccccccccchhhhcCHHHHHHHHHHHHHHHh
Q 009941 431 GVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD-CGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 509 (522)
Q Consensus 431 ~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tid-iGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~ 509 (522)
..+.+.++++++..|++..... .+|+|++.+++. .|||+++ +|+---.+|++-|-++.+|+..+++++..++.
T Consensus 300 ~~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~g~Gpg~~~~H~~dE~v~i~~l~~~~~vl~~~l~ 373 (376)
T PRK07473 300 MALYEKARAIAGQLGLSLPHGS-----AGGGSDGNFTGA-MGIPTLDGLGVRGADYHTLNEHIEVDSLAERGRLMAGLLA 373 (376)
T ss_pred HHHHHHHHHHHHHcCCCCcccc-----CccccHhhhHHh-cCCCEEEeccCCCCCCCCCCceEecccHHHHHHHHHHHHH
Confidence 3577888899999999877532 357788888775 6999998 98876779999999999999999999999986
Q ss_pred hc
Q 009941 510 SF 511 (522)
Q Consensus 510 ~~ 511 (522)
.+
T Consensus 374 ~~ 375 (376)
T PRK07473 374 TL 375 (376)
T ss_pred hc
Confidence 53
No 23
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=95.88 E-value=0.02 Score=61.46 Aligned_cols=78 Identities=12% Similarity=-0.070 Sum_probs=62.9
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccc--cchhhhcCHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSM--HSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~M--HS~~E~~~~~Dv~~~~~l~~a 506 (522)
.|..+...+++.+++.|++.+... .+|+|.+.+.+ .|+|++.+..|...+ |++.|.++.+|+...++++..
T Consensus 331 ~d~~lv~~l~~a~~~~G~~~~~~~-----~~ggtDa~~~~--~giPt~~~~gp~~~~~aH~~dE~v~i~~l~~~~~il~~ 403 (414)
T PRK12891 331 FAPGCIDAVRDAARALGLSHMDIV-----SGAGHDACFAA--RGAPTGMIFVPCVDGLSHNEAEAITPEWFAAGADVLLR 403 (414)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----CcchHHHHHHH--hhCCEEEEEEcCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 366788999999998999877532 25667666653 499998877777764 999999999999999999999
Q ss_pred HHhhccc
Q 009941 507 FYESFSS 513 (522)
Q Consensus 507 f~~~~~~ 513 (522)
++..+.+
T Consensus 404 ~l~~~~~ 410 (414)
T PRK12891 404 AVLQSAQ 410 (414)
T ss_pred HHHHHhh
Confidence 9988754
No 24
>PRK08652 acetylornithine deacetylase; Provisional
Probab=95.59 E-value=0.02 Score=59.23 Aligned_cols=76 Identities=20% Similarity=0.079 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-ccccchhhhcCHHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~-l~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
|..+.+.+++.+++.|.+..... .+|+|.+..++. .|+|++.+|.-. -.+|++.|-+..+|+...++++..++
T Consensus 268 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~gip~v~~Gpg~~~~~H~~nE~i~i~~l~~~~~~l~~~~ 341 (347)
T PRK08652 268 DEEIVQLLEKAMKEVGLEPEFTV-----MRSWTDAINFRY-NGTKTVVWGPGELDLCHTKFERIDVREVEKAKEFLKALN 341 (347)
T ss_pred CCHHHHHHHHHHHHhCCCCCcCc-----CCccchhHHHHH-CCCCEEEECCCchhhcCCCCceeeHHHHHHHHHHHHHHH
Confidence 66788889999998898765432 246677777654 799999999654 35899999999999999999999998
Q ss_pred hhc
Q 009941 509 ESF 511 (522)
Q Consensus 509 ~~~ 511 (522)
+.+
T Consensus 342 ~~~ 344 (347)
T PRK08652 342 EIL 344 (347)
T ss_pred HHH
Confidence 765
No 25
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=95.48 E-value=0.032 Score=58.63 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
|....+.+++.+++ .|.+.+... .||+|.+.++.. .|+|++.+|..-..+|++.|-+..+|+..+++++..++
T Consensus 294 ~~~~~~~~~~a~~~~~g~~~~~~~-----~~g~~d~~~~~~-~g~p~~~~Gp~~~~~H~~~E~i~i~~l~~~~~~~~~~l 367 (370)
T TIGR01246 294 DGKLIDKAREAIEETNGIKPELST-----GGGTSDGRFIAL-MGAEVVEFGPVNATIHKVNECVSIEDLEKLSDVYQDLL 367 (370)
T ss_pred CCHHHHHHHHHHHHHhCCCCceec-----CCCCchHHHHHH-cCCCEEEecCCcccCCCCCceeEHHHHHHHHHHHHHHH
Confidence 44556666666665 687765532 367888877765 79999999999888999999999999999999999988
Q ss_pred hhc
Q 009941 509 ESF 511 (522)
Q Consensus 509 ~~~ 511 (522)
.+|
T Consensus 368 ~~~ 370 (370)
T TIGR01246 368 ENL 370 (370)
T ss_pred HhC
Confidence 654
No 26
>PRK06837 acetylornithine deacetylase; Provisional
Probab=95.47 E-value=0.033 Score=60.04 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
|......+++.+++ .|.+.+.... +|+|.+.++....|+|++.+|..-..+|++.|-++.+|+..+++++..++
T Consensus 344 ~~~~~~~~~~a~~~~~g~~~~~~~~-----~g~tDa~~~~~~~gip~v~~Gp~~~~~H~~nE~i~i~~l~~~~~~~~~~l 418 (427)
T PRK06837 344 GSEAEAALARAHAAVFGGPLRSFVT-----TAYTDTRFYGLYYGIPALCYGPSGEGIHGFDERVDLESVRKVTKTIALFV 418 (427)
T ss_pred CCHHHHHHHHHHHHHhCCCCeeeEE-----eeccchHHHhccCCCCEEEECCCCCccCCCCceEEHHHHHHHHHHHHHHH
Confidence 44666777777766 7888775442 57787777764579999999998888999999999999999999999999
Q ss_pred hhcccc
Q 009941 509 ESFSSI 514 (522)
Q Consensus 509 ~~~~~~ 514 (522)
..+-.+
T Consensus 419 ~~~~~~ 424 (427)
T PRK06837 419 AEWCGV 424 (427)
T ss_pred HHHhCC
Confidence 776543
No 27
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=95.41 E-value=0.032 Score=57.88 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=63.8
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
.|..+...+++.+++.+.+..... .+|+|.+.+++...|+|++.+|.-.. .+|++.|-+..+|++.+++++..+
T Consensus 255 ~~~~lv~~~~~a~~~~~~~~~~~~-----~~g~tD~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~ 329 (336)
T TIGR01902 255 RNNPLVRAFVRAIRKQGMKPRLKK-----KTGTSDMNILAPIWTVPMVAYGPGDSTLDHTPQEKISLAEYLIGIKTLMLA 329 (336)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEee-----ccccCccceeccccCCCeEEECCCCcccCCCCcceeEHHHHHHHHHHHHHH
Confidence 356778888888888887655432 24668887776656999999997754 479999999999999999999999
Q ss_pred Hhhccc
Q 009941 508 YESFSS 513 (522)
Q Consensus 508 ~~~~~~ 513 (522)
+..+.+
T Consensus 330 l~~l~~ 335 (336)
T TIGR01902 330 IEELWQ 335 (336)
T ss_pred HHHHhc
Confidence 987643
No 28
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=95.10 E-value=0.058 Score=57.41 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc---ccccchhhhcCHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ---LSMHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~---l~MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
+..+...+++.+++.+.+.+... .+|+|++.++.. .|||++-.|.-- ...|++.|-++.+|+..+++++..
T Consensus 319 ~~~lv~~l~~a~~~~~~~~~~~~-----~~g~tDa~~~~~-~gip~v~fgp~~~~~~~aH~~dE~i~i~~l~~~~~~~~~ 392 (400)
T TIGR01880 319 SNPWWVAFKDAVKEMGCTFKPEI-----LPGSTDSRYIRA-AGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEIYQT 392 (400)
T ss_pred CCHHHHHHHHHHHHcCCeeccee-----ecCcchHHHHHh-CCCCeEEECCccCCcccccCCCCceEHHHHHHHHHHHHH
Confidence 44666888889998876654422 257788888764 799999877632 248999999999999999999999
Q ss_pred HHhhccc
Q 009941 507 FYESFSS 513 (522)
Q Consensus 507 f~~~~~~ 513 (522)
++..+..
T Consensus 393 ~l~~~~~ 399 (400)
T TIGR01880 393 LISALAS 399 (400)
T ss_pred HHHHhhc
Confidence 9987754
No 29
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=94.92 E-value=0.074 Score=56.22 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 429 t~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
.|..+.+.+++.+++ .|.+.+.... +|+|.+.++.. .|||++.+|..--.+|++-|-+..+|++.+++++..+
T Consensus 323 ~~~~~v~~l~~a~~~~~g~~~~~~~~-----~g~td~~~~~~-~gip~v~~Gp~~~~~H~~nE~v~i~~l~~~~~~~~~~ 396 (400)
T PRK13983 323 PDSEIVKKLKRAIKEVRGIEPKVGGI-----GGGTVAAFLRK-KGYPAVVWSTLDETAHQPNEYAKISNLIEDAKVFALL 396 (400)
T ss_pred CCcHHHHHHHHHHHHhcCCCceeeee-----cCcHHHHHHHH-cCCCEEEeCCccccCCCCCceeeHHHHHHHHHHHHHH
Confidence 356677777777766 6887776442 57788887764 7999999999888899999999999999999999988
Q ss_pred Hh
Q 009941 508 YE 509 (522)
Q Consensus 508 ~~ 509 (522)
+.
T Consensus 397 ~~ 398 (400)
T PRK13983 397 LL 398 (400)
T ss_pred Hh
Confidence 74
No 30
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=94.91 E-value=0.072 Score=57.06 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=60.0
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccc--ccchhhhcCHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS--MHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~--MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
.|+.+...+.+.+++.|++.+... .+|+|.+.++.. .| |++.+..|... +|++.|.++.+|+..+++++..
T Consensus 333 ~~~~l~~~l~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~g-p~~~~~gp~~~~~aHs~dE~v~i~~l~~~~~i~~~ 405 (414)
T PRK12890 333 CDPALVDAVEAAAARLGYPSRRMP-----SGAGHDAAAIAR-IG-PSAMIFVPCRGGISHNPEEAMDPEDLAAGARVLLD 405 (414)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----CcccHHHHHHHh-hC-CEEEEEecCCCCCCCCcCccCCHHHHHHHHHHHHH
Confidence 467888899999998898876432 357787777764 56 55555555443 8999999999999999999999
Q ss_pred HHhhcc
Q 009941 507 FYESFS 512 (522)
Q Consensus 507 f~~~~~ 512 (522)
++..|.
T Consensus 406 ll~~l~ 411 (414)
T PRK12890 406 AVLRLD 411 (414)
T ss_pred HHHHHh
Confidence 998764
No 31
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=94.84 E-value=0.072 Score=57.11 Aligned_cols=77 Identities=14% Similarity=0.050 Sum_probs=60.7
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccc--ccchhhhcCHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS--MHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~--MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
.|..+.+.+++.+++.|.+.+... .+|+|.+.+.+ .++|++.++.|... +|++.|.++.+++..+++++..
T Consensus 332 ~d~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~--~~iP~~~~~gp~~~~~~H~~dE~v~i~~l~~~~~v~~~ 404 (413)
T PRK09290 332 FDPGLVAALEEAAERLGLSYRRLP-----SGAGHDAQILA--AVVPTAMIFVPSVGGISHNPAEFTSPEDCAAGANVLLH 404 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----CccchHHHHHh--ccCCEEEEEeccCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 467788889999888887754322 35777777664 47999887778654 8999999999999999999999
Q ss_pred HHhhcc
Q 009941 507 FYESFS 512 (522)
Q Consensus 507 f~~~~~ 512 (522)
++..+.
T Consensus 405 ~l~~l~ 410 (413)
T PRK09290 405 ALLELA 410 (413)
T ss_pred HHHHHh
Confidence 987664
No 32
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=94.76 E-value=0.072 Score=55.69 Aligned_cols=77 Identities=14% Similarity=0.017 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
|..+.+.+++..++.+.+.... ..+|+|.+.++....|+|++.+|+... .+|++.|-+..+|+..+++++..++
T Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~-----~~~g~tD~~~~~~~~gip~v~~Gpg~~~~~H~~dE~i~i~~l~~~~~~~~~~~ 345 (348)
T PRK04443 271 RTPLARAFRVAIREAGGTPRLK-----RKTGTSDMNVVAPAWGCPMVAYGPGDSDLDHTPDEHLPLAEYLRAIAVLTDVL 345 (348)
T ss_pred CCHHHHHHHHHHHHhcCCccee-----ccccCCcHHHHhhhcCCCEEEECCCCccccCCCcccccHHHHHHHHHHHHHHH
Confidence 4456777788777765432211 124777776665447999999998754 4799999999999999999999998
Q ss_pred hhc
Q 009941 509 ESF 511 (522)
Q Consensus 509 ~~~ 511 (522)
.++
T Consensus 346 ~~l 348 (348)
T PRK04443 346 ERL 348 (348)
T ss_pred hhC
Confidence 653
No 33
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.29 E-value=0.11 Score=54.43 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHh
Q 009941 431 GVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 509 (522)
Q Consensus 431 ~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~ 509 (522)
..+.+.+++.+++ .|.+.+... .+|+|.+.++.. .|+|++.+|.--...|++.|-++.+|+...++++..++.
T Consensus 298 ~~~~~~l~~a~~~~~g~~~~~~~-----~~g~tda~~~~~-~g~p~v~~Gp~~~~~H~~~E~i~~~~l~~~~~~~~~~~~ 371 (375)
T PRK13009 298 GKLVDAVVAAIEAVTGITPELST-----SGGTSDARFIAD-YGAQVVEFGPVNATIHKVNECVSVADLEKLTRIYERILE 371 (375)
T ss_pred cHHHHHHHHHHHHHhCCCceeec-----cCCCccHHHHHH-cCCCeEEeccCcccCCCCCCcEEHHHHHHHHHHHHHHHH
Confidence 4456666666655 687766543 367788888765 799999999876679999999999999999999999987
Q ss_pred hc
Q 009941 510 SF 511 (522)
Q Consensus 510 ~~ 511 (522)
.|
T Consensus 372 ~~ 373 (375)
T PRK13009 372 RL 373 (375)
T ss_pred HH
Confidence 65
No 34
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.27 E-value=0.1 Score=55.21 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
+..+.+.+++.+++ .|++..... .+|+|.+.++. +.|||++.+|.-.. .+|++.|-++.+++...++++..+
T Consensus 313 ~~~l~~~~~~a~~~~~g~~~~~~~-----~~g~tD~~~~~-~~gip~v~~Gpg~~~~~H~~~E~i~~~~l~~~~~i~~~~ 386 (394)
T PRK08651 313 DSELVKALREAIREVLGVEPKKTI-----SLGGTDARFFG-AKGIPTVVYGPGELELAHAPDEYVEVKDVEKAAKVYEEV 386 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----ecCcccHHHHh-hCCCcEEEECCCChHhcCCCCceeEHHHHHHHHHHHHHH
Confidence 44577888888877 787765432 24777777766 47999999888653 699999999999999999999999
Q ss_pred Hhhcc
Q 009941 508 YESFS 512 (522)
Q Consensus 508 ~~~~~ 512 (522)
+.++.
T Consensus 387 i~~l~ 391 (394)
T PRK08651 387 LKRLA 391 (394)
T ss_pred HHHhh
Confidence 87764
No 35
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=94.16 E-value=0.21 Score=53.94 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=62.7
Q ss_pred CcccCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHh-cCCCCcEEEeccccccccchhhhcCHHHHHHHHHHH
Q 009941 426 RYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILA-SGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHF 504 (522)
Q Consensus 426 ~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~-s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~ 504 (522)
++-.+..+....++..++.++.-....+| |||.|..++ -...++.+-+|. ...+||+.|-++...++.+++++
T Consensus 331 ~~~~~~~iv~~a~~a~~~l~~~p~v~~i~-----gGtd~~~is~~g~p~~~i~~Gp-~~n~Hs~~E~v~I~s~ek~~~~l 404 (414)
T COG2195 331 KIKPDSPLVDLAKKAYKELGIKPKVKPIH-----GGTDGGVLSFKGLPTPNISTGP-GENPHSPDEFVSIESMEKAVQVL 404 (414)
T ss_pred CCCCCchHHHHHHHHHHHhCCCceEEEee-----cccchhhhhccCCCCceEeccc-ccCCCCccceeehHHHHHHHHHH
Confidence 35567788899999999999996665543 555555444 445555666665 99999999999999999999999
Q ss_pred HHHHhhcc
Q 009941 505 KAFYESFS 512 (522)
Q Consensus 505 ~af~~~~~ 512 (522)
.+.++.+.
T Consensus 405 ~~l~~~~~ 412 (414)
T COG2195 405 VELLKLAA 412 (414)
T ss_pred HHHHHHhh
Confidence 99987654
No 36
>PRK06915 acetylornithine deacetylase; Validated
Probab=94.11 E-value=0.12 Score=55.42 Aligned_cols=81 Identities=11% Similarity=-0.014 Sum_probs=62.3
Q ss_pred cCHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-ccccchhhhcCHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 429 t~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~-l~MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
.|..+...+++++++ .|.+..... .+|+|.+.++....|+|++.+|+.. -..|++.|-++.+|+..+++++.+
T Consensus 338 ~d~~lv~~l~~a~~~~~G~~~~~~~-----~~g~tD~~~~~~~~giP~v~fGpg~~~~aH~~dE~v~~~~l~~~~~~~~~ 412 (422)
T PRK06915 338 ENHPLMTTLEHNFVEIEGNKPIIEA-----SPWGTDGGLLTQIAGVPTIVFGPGETKVAHYPNEYIEVDKMIAAAKIIAL 412 (422)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeece-----eeeeccHHHHhccCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHH
Confidence 356777888888887 477655422 2466777777653499999999864 348999999999999999999999
Q ss_pred HHhhcccc
Q 009941 507 FYESFSSI 514 (522)
Q Consensus 507 f~~~~~~~ 514 (522)
++.++-.+
T Consensus 413 ll~~~~~~ 420 (422)
T PRK06915 413 TLLDWCEV 420 (422)
T ss_pred HHHHHhCC
Confidence 98776544
No 37
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=93.82 E-value=0.17 Score=52.84 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccc-ccchhhhcCHHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~-MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
+..+...+.+.+++.|.+.+... .+|+|.+.+++. .|++++..|.-... +|++.|-+..+|+..++++|..++
T Consensus 266 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~~~-~~~~~v~fGpg~~~~aH~~nE~i~i~~l~~~~~~~~~~i 339 (346)
T PRK00466 266 NNPVVKALMRALLKQNIKPRLVR-----KAGTSDMNILQK-ITTSIATYGPGNSMLEHTNQEKITLDEIYIAVKTYMLAI 339 (346)
T ss_pred CCHHHHHHHHHHHHhCCCceEEe-----cCCcCcHHHHHH-hCCCEEEECCCCcccccCCCceeeHHHHHHHHHHHHHHH
Confidence 35666777777777788765543 256777777664 67899999976554 899999999999999999999998
Q ss_pred hhcc
Q 009941 509 ESFS 512 (522)
Q Consensus 509 ~~~~ 512 (522)
..+.
T Consensus 340 ~~l~ 343 (346)
T PRK00466 340 EELW 343 (346)
T ss_pred HHHH
Confidence 7653
No 38
>PRK08596 acetylornithine deacetylase; Validated
Probab=93.63 E-value=0.18 Score=54.22 Aligned_cols=80 Identities=18% Similarity=0.073 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-ccccchhhhcCHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~-l~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
|..+...+++.+++ .|.+..... .+|+|.+.++.. .|||++.+|..- -.+|++.|-+..+|+..+++++.++
T Consensus 338 ~~~~v~~l~~a~~~~~g~~~~~~~-----~~g~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~v~i~~~~~~~~~~~~~ 411 (421)
T PRK08596 338 EHPAVKTLSSAHESVLSKNAILDM-----STTVTDGGWFAE-FGIPAVIYGPGTLEEAHSVNEKVEIEQLIEYTKVITAF 411 (421)
T ss_pred CchHHHHHHHHHHHHhCCCCeeeE-----Eeeecchhhhhh-cCCCEEEECCCcccccCCCCceEEHHHHHHHHHHHHHH
Confidence 33444445444444 577764432 256777777765 899999999864 4589999999999999999999999
Q ss_pred Hhhccccc
Q 009941 508 YESFSSID 515 (522)
Q Consensus 508 ~~~~~~~~ 515 (522)
+.+|-...
T Consensus 412 l~~~~~~~ 419 (421)
T PRK08596 412 IYEWCHTK 419 (421)
T ss_pred HHHHhCCC
Confidence 98776544
No 39
>PRK08737 acetylornithine deacetylase; Provisional
Probab=93.60 E-value=0.15 Score=54.04 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-ccccchhhhcCHHHHHHHHHHHHHHHh
Q 009941 431 GVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAFYE 509 (522)
Q Consensus 431 ~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~-l~MHS~~E~~~~~Dv~~~~~l~~af~~ 509 (522)
....+.+++++++.++|.-.. .+|+|.+.++.. .|||||..|.-- ..+|++.|-+.++++..+++++..++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~------~~~~tDa~~~~~-~Gip~v~~GpG~~~~aHt~dE~i~i~~l~~~~~~~~~~~~ 362 (364)
T PRK08737 290 EERRLAARDVADALDLPIGNA------VDFWTEASLFSA-AGYTALVYGPGDIAQAHTADEFVTLDQLQRYAESVHRIIN 362 (364)
T ss_pred hHHHHHHHHHHhhhcCCCCce------eccccCHHHHHH-cCCCEEEECCCChhhccCCCcceeHHHHHHHHHHHHHHhc
Confidence 344455677777778775321 246788887764 799999999884 468999999999999999999998875
No 40
>PRK13004 peptidase; Reviewed
Probab=93.50 E-value=0.088 Score=56.09 Aligned_cols=78 Identities=21% Similarity=0.021 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHC-CCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKLH-NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~-gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
+..+...+++.+++. |.+..... ..++|.|.......|+|++.+|+-.. .+|++.|-+..+|+...++++..+
T Consensus 317 ~~~~~~~l~~a~~~~~g~~~~~~~-----~~~~td~~~~~~~~Gip~v~~Gpg~~~~aH~~nE~i~i~~l~~~~~~~~~~ 391 (399)
T PRK13004 317 DHEFVKAAVEAYKGLFGKAPEVDK-----WTFSTNGVSIAGRAGIPTIGFGPGKEPLAHAPNEYTWKEQLVKAAAMYAAI 391 (399)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecc-----cccccCCeEEehhcCCCEEEECCCcccccCCCCceeEHHHHHHHHHHHHHH
Confidence 456667777777765 77544321 13445444444458999999997554 499999999999999999999999
Q ss_pred Hhhcc
Q 009941 508 YESFS 512 (522)
Q Consensus 508 ~~~~~ 512 (522)
+..|-
T Consensus 392 ~~~~~ 396 (399)
T PRK13004 392 PKSLL 396 (399)
T ss_pred HHHHh
Confidence 87664
No 41
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=93.43 E-value=0.2 Score=54.94 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=60.8
Q ss_pred ccCHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcC-CCCcEEEeccccccccchhhhcCHHHHHHHHHHHH
Q 009941 428 ATSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASG-VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFK 505 (522)
Q Consensus 428 ~t~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~-~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~ 505 (522)
..|..+...+++.+++ .|.+...... +|||.+.+.+.. .|+|++.+|.+.-.+|++.|-+..+|+...++++.
T Consensus 396 ~~d~plv~~l~~a~~~~~g~~~~~~~~-----~Ggtd~~~~~~~~~~i~~v~~Gp~~~~~H~~nE~i~i~~l~~~~~~~~ 470 (477)
T TIGR01893 396 DPQSNLLDTARKVYSEMFGEDPEVKVI-----HAGLECGIISSKIPDIDMISIGPNIYDPHSPNERVSISSVEKVWDFLV 470 (477)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCeEEEe-----ecCccHHHHHhhCCCceEEEeCCCCCCCCCCCceeeHHHHHHHHHHHH
Confidence 3456677777777765 5777765432 455556665543 48999999999999999999999999999999999
Q ss_pred HHHhhc
Q 009941 506 AFYESF 511 (522)
Q Consensus 506 af~~~~ 511 (522)
.+++.+
T Consensus 471 ~ll~~~ 476 (477)
T TIGR01893 471 KVLERL 476 (477)
T ss_pred HHHHhc
Confidence 998765
No 42
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=93.26 E-value=0.22 Score=52.45 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhc-CCCCcEEEeccc-cccccchhhhcCHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILAS-GVGIRTVDCGIA-QLSMHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s-~~Gi~tidiGiP-~l~MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
|..+.+.+++.+++ .|.+..... .+|+|.+..+.. ..|+|++.+|.- .-.+|++.|-++.+|+..+++++..
T Consensus 296 ~~~l~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~~~~~~~ip~i~~Gpg~~~~~H~~~E~i~~~~l~~~~~~~~~ 370 (377)
T PRK08588 296 DSKLVQLAKDVAKSYVGQDIPLSA-----IPGATDASSFLKKKPDFPVIIFGPGNNLTAHQVDEYVEKDMYLKFIDIYKE 370 (377)
T ss_pred CCHHHHHHHHHHHHhhCCCCceec-----CCCcccHHHHhhhcCCCCEEEECCCCCccCCCCCceeEHHHHHHHHHHHHH
Confidence 45677888888776 677655432 246666655543 368999999976 5679999999999999999999999
Q ss_pred HHhhc
Q 009941 507 FYESF 511 (522)
Q Consensus 507 f~~~~ 511 (522)
++.++
T Consensus 371 ~~~~~ 375 (377)
T PRK08588 371 IIIQY 375 (377)
T ss_pred HHHHH
Confidence 98765
No 43
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=92.85 E-value=0.16 Score=54.68 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc--cccchhhhcCHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL--SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l--~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
|..+...+++.|++.+.++... ..+|+|++.+++. .+|++.+-.|.. .+|++.|-++.+|+...++++..+
T Consensus 326 d~~lv~~l~~a~~~~~~~~~~~-----~sggg~Da~~~~~--~vP~~~ifgp~~~g~~H~p~E~v~~e~l~~g~~vl~~~ 398 (406)
T TIGR03176 326 NKEIVAIIEQLAKAEKLNYRLM-----HSGAGHDAQIFAP--RVPTAMIFVPSIGGISHNPAERTNIEDLVEGVKTLADM 398 (406)
T ss_pred CHHHHHHHHHHHHHcCCCceec-----CcccHHHHHHHHH--HCCEEEEEEeCCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 6788899999999988775532 2367788877775 389988777763 479999999999999999999999
Q ss_pred Hhhcc
Q 009941 508 YESFS 512 (522)
Q Consensus 508 ~~~~~ 512 (522)
+..+.
T Consensus 399 l~~l~ 403 (406)
T TIGR03176 399 LYELA 403 (406)
T ss_pred HHHHh
Confidence 87664
No 44
>PRK09133 hypothetical protein; Provisional
Probab=92.71 E-value=0.22 Score=54.32 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHC--CCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEec---c-c-cccccchhhhcCHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKLH--NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCG---I-A-QLSMHSVREICGTEDIDIAYR 502 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~--gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiG---i-P-~l~MHS~~E~~~~~Dv~~~~~ 502 (522)
+..+.+.+++.+++. |+++.... .+|+|++.++.. .|+|++.++ . + .-.+|++.|-++.+|+..+++
T Consensus 386 ~~~l~~~l~~~~~~~~~g~~~~~~~-----~~ggtDa~~~~~-~gip~~~~~~i~gp~~~~~aH~~dE~v~i~~l~~~~~ 459 (472)
T PRK09133 386 RPDIMKAVEKLTAAMWPGVPVIPSM-----STGATDGRYLRA-AGIPTYGVSGLFGDPDDTFAHGLNERIPVASFYEGRD 459 (472)
T ss_pred CcHHHHHHHHHHHHHCCCCceeccc-----cccccchHHHHh-cCCCceeecCcccCcccccCCCCCCceeHHHHHHHHH
Confidence 456778888888775 77765432 257788888764 799998632 1 2 245899999999999999999
Q ss_pred HHHHHHhhcc
Q 009941 503 HFKAFYESFS 512 (522)
Q Consensus 503 l~~af~~~~~ 512 (522)
++..|+..+.
T Consensus 460 ~l~~~l~~l~ 469 (472)
T PRK09133 460 FLYELVKDLA 469 (472)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 45
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=92.70 E-value=0.26 Score=54.45 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=59.8
Q ss_pred ccCHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHH
Q 009941 428 ATSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 428 ~t~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
..|..+...+.++.++ .|-+-+.... .+|...|-+....-|||+|.+|.=...||||.|-++.+++..+++++..
T Consensus 402 ~~ds~lv~~l~~~y~e~~G~~~~~~~i----haglEcG~~~~~~p~i~~VsfGP~~~~~HspdE~v~I~s~~~~~~~l~~ 477 (485)
T PRK15026 402 DANSPVMHLVRETYQRLFNKTPNIQII----HAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTE 477 (485)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCeEEEE----EEEehHHHHHhhCCCCCEEEECCCCCCCCCCCcEEEhHHHHHHHHHHHH
Confidence 3455666666666655 3455554332 2344456555445799999999999999999999999999999999999
Q ss_pred HHhhc
Q 009941 507 FYESF 511 (522)
Q Consensus 507 f~~~~ 511 (522)
|++.+
T Consensus 478 ~l~~~ 482 (485)
T PRK15026 478 LLKEI 482 (485)
T ss_pred HHHhh
Confidence 99887
No 46
>PRK07318 dipeptidase PepV; Reviewed
Probab=92.51 E-value=0.15 Score=55.68 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
+..+...+++.+++ .|.+.+.... +|+|++.++. .||+.+-++++.. .+|++.|-++.+|+..+++++..+
T Consensus 388 d~~lv~~l~~a~~~~~g~~~~~~~~-----~ggtDa~~~~--~~i~~Gp~~pg~~~~aH~~dE~v~i~~l~~~~~v~~~~ 460 (466)
T PRK07318 388 DDPLVKTLLKVYEKQTGLKGEEQVI-----GGGTYARLLK--RGVAFGAMFPGSEDTMHQANEYIEIDDLIKAAAIYAEA 460 (466)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeeEE-----cchHhHhhCC--CeEEeCCCCCCCCCCCcCCCcceeHHHHHHHHHHHHHH
Confidence 56677888888885 7888775432 5778887765 3677665555533 399999999999999999999999
Q ss_pred Hhhc
Q 009941 508 YESF 511 (522)
Q Consensus 508 ~~~~ 511 (522)
+.++
T Consensus 461 l~~~ 464 (466)
T PRK07318 461 IYEL 464 (466)
T ss_pred HHHH
Confidence 8765
No 47
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=92.50 E-value=0.28 Score=52.36 Aligned_cols=77 Identities=13% Similarity=-0.016 Sum_probs=56.6
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-ccccchhhhcCHHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~-l~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
.|+.+.+.+++.+++.|.+.+... .+|+|.+.+++. .+.+++..|... -.+|++.|.++.+|+..+++++..+
T Consensus 331 ~d~~l~~~l~~~~~~~g~~~~~~~-----~~g~tD~~~~~~-~~p~~v~~gp~~~~~~Hs~dE~v~i~~l~~~~~i~~~l 404 (412)
T PRK12893 331 FDPALVALVEAAAEALGLSHMRMV-----SGAGHDAMFLAR-VAPAAMIFVPCRGGISHNEAEDTEPADLAAGANVLLHA 404 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----CccHHHHHHHHh-hCCEEEEEeecCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 367788889998888888765321 357777777665 343345554332 2379999999999999999999999
Q ss_pred Hhhc
Q 009941 508 YESF 511 (522)
Q Consensus 508 ~~~~ 511 (522)
+..+
T Consensus 405 l~~~ 408 (412)
T PRK12893 405 VLEL 408 (412)
T ss_pred HHHh
Confidence 8765
No 48
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=91.97 E-value=0.39 Score=51.63 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCC
Q 009941 71 SWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (522)
Q Consensus 71 s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dsp 141 (522)
||....|.+++++.++++|++ +++|..| ||+|...|..+ +.+.+++++|+|++
T Consensus 29 s~~~~~a~~~~~~~~~~~Gl~---------------v~~D~~g-N~~~~~~g~~~--~~~~i~~gsHlDtv 81 (406)
T TIGR03176 29 SPEWLAAQQQFKKRMAESGLE---------------TRFDDVG-NLYGRLVGTEF--PEETILTGSHIDTV 81 (406)
T ss_pred CHHHHHHHHHHHHHHHHcCCE---------------EEEcCCC-cEEEEecCCCC--CCCeEEEeccccCC
Confidence 344577888999999999985 4556678 99998878653 23579999999987
No 49
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=91.64 E-value=0.37 Score=51.38 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=57.9
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc--cccchhhhcCHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL--SMHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l--~MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
.|..+.+.+++.+++.|.+..... .+|+|.+.+++. . +|++.+..|.- .+|++.|-++.+|+...++++..
T Consensus 332 ~d~~lv~~~~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~-ip~~~~~gp~~~~~~H~~~E~v~i~~l~~~~~il~~ 404 (412)
T PRK12892 332 CDAALVDALRAAAEAAGGPYLEMP-----SGAGHDAQNMAR-I-APSAMLFVPSKGGISHNPAEDTSPADLAQGARVLAD 404 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----cchHHHHHHHHh-H-CCEEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 467788889999998887754322 357777777665 3 88766555532 37999999999999999999999
Q ss_pred HHhhc
Q 009941 507 FYESF 511 (522)
Q Consensus 507 f~~~~ 511 (522)
++..+
T Consensus 405 ~l~~~ 409 (412)
T PRK12892 405 TLRRL 409 (412)
T ss_pred HHHHh
Confidence 98765
No 50
>PRK06446 hypothetical protein; Provisional
Probab=91.18 E-value=0.42 Score=51.66 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEE--ec--cccccccchhhhcCHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD--CG--IAQLSMHSVREICGTEDIDIAYRHF 504 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tid--iG--iP~l~MHS~~E~~~~~Dv~~~~~l~ 504 (522)
+..+...+.+..++ .+.+-+... ..+|+|.+.......|+|++. +| .|--.+|++-|-++.++++.+++++
T Consensus 351 ~~~~v~~l~~a~~~~~g~~~~~~~----~~~g~~d~~~~~~~~gip~v~~~~g~g~~~~~~H~~dE~i~i~~l~~~~~~~ 426 (436)
T PRK06446 351 NSKVVKAMIESAKRVYGTEPVVIP----NSAGTQPMGLFVYKLGIRDIVSAIGVGGYYSNAHAPNENIRIDDYYKAIKHT 426 (436)
T ss_pred CCHHHHHHHHHHHHHhCCCCceec----CCCCcchHHHHHHHhCCCcceeecccCCCCcCCcCCCCCcCHHHHHHHHHHH
Confidence 44555555555554 366544432 234555555555558999875 43 3467899999999999999999999
Q ss_pred HHHHhhcc
Q 009941 505 KAFYESFS 512 (522)
Q Consensus 505 ~af~~~~~ 512 (522)
..|++.+.
T Consensus 427 ~~~~~~~~ 434 (436)
T PRK06446 427 EEFLKLYS 434 (436)
T ss_pred HHHHHHhc
Confidence 99998764
No 51
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=91.01 E-value=0.3 Score=51.86 Aligned_cols=77 Identities=18% Similarity=0.035 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccc-ccchhhhcCHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~-MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
+..+...+.+++++ .+-+-.... .+++|.+.....+.|+|++.+|+-... +|++.|-+..+|+..+++++.+|
T Consensus 315 ~~~~v~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~ 389 (395)
T TIGR03320 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVRAAAMYAAI 389 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----cceecccceehhhcCCCEEEECCCchhhccCCCcEEEHHHHHHHHHHHHHH
Confidence 44555666666665 355543321 134444433334589999999987654 79999999999999999999999
Q ss_pred Hhhc
Q 009941 508 YESF 511 (522)
Q Consensus 508 ~~~~ 511 (522)
+..|
T Consensus 390 ~~~~ 393 (395)
T TIGR03320 390 PTVY 393 (395)
T ss_pred HHHh
Confidence 8765
No 52
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=90.98 E-value=0.53 Score=50.30 Aligned_cols=76 Identities=12% Similarity=-0.039 Sum_probs=59.6
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
.|..+...+++.+++.|.+..... .+|+|++.+++. .|++++..|.... .+|++.|-++.+|+..+++++..+
T Consensus 324 ~d~~lv~~l~~a~~~~g~~~~~~~-----~~ggtDa~~~~~-~~~~~v~fgPg~~~~aH~~dE~v~~e~l~~~~~vl~~~ 397 (401)
T TIGR01879 324 CSEELVAALTELCERLGYNARVMV-----SGAGHDAQILAP-IVPIGMIFIPSINGISHNPAEWSNITDCAEGAKVLYLM 397 (401)
T ss_pred CCHHHHHHHHHHHHHcCCCccccc-----cchHHHHHHHHh-hCCEEEEEecCCCCCcCCCCccCCHHHHHHHHHHHHHH
Confidence 477888999999998887765421 357787777764 5888887766543 479999999999999999999988
Q ss_pred Hhh
Q 009941 508 YES 510 (522)
Q Consensus 508 ~~~ 510 (522)
+..
T Consensus 398 i~~ 400 (401)
T TIGR01879 398 VYQ 400 (401)
T ss_pred HHh
Confidence 754
No 53
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=90.74 E-value=0.44 Score=50.16 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccc-cccccchhhhcCHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIA-QLSMHSVREICGTEDIDIAYR 502 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP-~l~MHS~~E~~~~~Dv~~~~~ 502 (522)
|....+.+++.+++ .|.+..... .+|+|.+.++.. .|||++.+|+- .-.+|++.|-+..+|+...++
T Consensus 306 ~~~~~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~v~~~~~~~~~~ 374 (375)
T TIGR01910 306 DSRLVKALEAIIKKVRGIEPEVLV-----STGGTDARFLRK-AGIPSIVYGPGDLETAHQVNEYISIKNLVESTK 374 (375)
T ss_pred CCHHHHHHHHHHHHHhCCCCeEee-----eccchhHHHHHH-cCCcEEEECCCCccccCCCCceeEHHHHHHHhh
Confidence 55677888888876 577654432 257787877765 79999999976 467999999999999988765
No 54
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=90.38 E-value=0.57 Score=52.99 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=60.1
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc--ccccchhhhcCHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~--l~MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
.|+.+...+++.|++.|++++... .+|||++.+++. .|.+++..+.+- -..|++.|.++.+|+...++++..
T Consensus 510 ~d~~lv~~~~~a~~~~G~~~~~~~-----sgag~Da~~~a~-~~p~amif~~~g~~g~sHsp~E~v~~edL~~g~~vl~~ 583 (591)
T PRK13799 510 CAPELMKQLEAATDAAGVPLFELA-----SGAGHDAMKIAE-IMDQAMLFTRCGNAGISHNPLESMTADDMELSADAFLD 583 (591)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----cchHHHHHHHHh-hCCEEEEEEecCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 377888999999999999876421 367788877765 466655554432 247999999999999999999999
Q ss_pred HHhhcc
Q 009941 507 FYESFS 512 (522)
Q Consensus 507 f~~~~~ 512 (522)
++..+.
T Consensus 584 ~l~~l~ 589 (591)
T PRK13799 584 FLNNFA 589 (591)
T ss_pred HHHHHh
Confidence 987764
No 55
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=90.34 E-value=0.73 Score=49.35 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCC-C-cEEEeccccc-cccchhhhcCHHHHHHHHHHHHHH
Q 009941 432 VTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVG-I-RTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 432 ~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~G-i-~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
.....+.+.+++ .|.+.-... .+|+|.+.++.. .| + |++-+|.-.. .+|++.|-+..+|+..+++++..+
T Consensus 344 ~lv~~l~~a~~~~~g~~~~~~~-----~~g~~D~~~~~~-~g~~~~~v~fGPg~~~~aH~~nE~v~i~~l~~~~~~l~~~ 417 (427)
T PRK13013 344 PVVRSVAAAIERVLGRQADYVV-----SPGTYDQKHIDR-IGKLKNCIAYGPGILDLAHQPDEWVGIADMVDSAKVMALV 417 (427)
T ss_pred HHHHHHHHHHHHhhCCCCceee-----cCccCCHHHHHh-cCCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHHH
Confidence 555666666665 677654332 256777777765 45 4 6888886433 489999999999999999999999
Q ss_pred Hhhccccc
Q 009941 508 YESFSSID 515 (522)
Q Consensus 508 ~~~~~~~~ 515 (522)
+..|...+
T Consensus 418 l~~~~~~~ 425 (427)
T PRK13013 418 LADLLAGT 425 (427)
T ss_pred HHHHhccc
Confidence 98876543
No 56
>PRK07906 hypothetical protein; Provisional
Probab=90.29 E-value=0.77 Score=49.30 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHHCC--CCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc--------ccccchhhhcCHHHHHH
Q 009941 430 SGVTAFLFKEIAKLHN--LPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--------LSMHSVREICGTEDIDI 499 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~g--Ip~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~--------l~MHS~~E~~~~~Dv~~ 499 (522)
|..+...+++.+++.. .. .... ..+|+|.+.++.. .|+|++..|.-- -.+|++-|-+..+|+..
T Consensus 341 ~~~~v~~l~~a~~~~~~~~~-~~~~----~~~ggtDa~~~~~-~g~p~~~~gp~~~~~~~~~~~~~H~~~E~v~~~~l~~ 414 (426)
T PRK07906 341 DGPLVDAMNAALLAEDPGAR-VVPY----MLSGGTDAKAFSR-LGIRCYGFAPLRLPPDLDFAALFHGVDERVPVDALRF 414 (426)
T ss_pred CcHHHHHHHHHHHHHCCCCe-Eeee----eecccCcHHHHHh-cCCceEEEeccccCccccccccCcCCCCceeHHHHHH
Confidence 5677788888888753 21 1111 1256788888774 799999887532 46999999999999999
Q ss_pred HHHHHHHHHhhc
Q 009941 500 AYRHFKAFYESF 511 (522)
Q Consensus 500 ~~~l~~af~~~~ 511 (522)
.++++..++.++
T Consensus 415 ~~~~~~~~l~~~ 426 (426)
T PRK07906 415 GVRVLDRFLRTC 426 (426)
T ss_pred HHHHHHHHHHhC
Confidence 999999998653
No 57
>PRK07079 hypothetical protein; Provisional
Probab=90.01 E-value=0.82 Score=49.93 Aligned_cols=81 Identities=10% Similarity=-0.064 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEec--cccccccchhhhcCHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCG--IAQLSMHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiG--iP~l~MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
+..+...+++.+++ .|.+.+... ..+|+|.+.+.....|||++..| .|--.+|++-|-+.++|+..+++++..
T Consensus 374 ~~~~v~~l~~a~~~~~g~~~~~~~----~~~g~~d~~~~~~~~giP~v~~g~~~~~~~~H~~dE~v~l~~l~~~~~~~~~ 449 (469)
T PRK07079 374 DDPWVRWALASIARTTGKKPALLP----NLGGSLPNDVFADILGLPTLWVPHSYPACSQHAPNEHLLASVAREGLQIMAG 449 (469)
T ss_pred CCHHHHHHHHHHHHHhCCCCceec----CCCcchhHHHHHHHhCCCEEEecCCCCCccCcCCCCCCCHHHHHHHHHHHHH
Confidence 34455555555554 466555432 13555555555544799999654 333358999999999999999999999
Q ss_pred HHhhcccc
Q 009941 507 FYESFSSI 514 (522)
Q Consensus 507 f~~~~~~~ 514 (522)
++..+.+-
T Consensus 450 ~~~~~~~~ 457 (469)
T PRK07079 450 LFWDLGEQ 457 (469)
T ss_pred HHHHHhcc
Confidence 99887543
No 58
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=89.56 E-value=0.62 Score=49.54 Aligned_cols=77 Identities=18% Similarity=0.035 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
|..+...+.+.+++ .|.+..... .+++|.+.....+.|+|++.+|+-.. .+|++.|-++.+|+..+++++.++
T Consensus 315 ~~~~~~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~dE~i~i~~l~~~~~~~~~~ 389 (395)
T TIGR03526 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVKAAAMYAAI 389 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----eeeecccceehhhcCCCEEEECCcchhhccCCCceEEHHHHHHHHHHHHHH
Confidence 44555566666654 454433321 13444443333347999999998754 489999999999999999999999
Q ss_pred Hhhc
Q 009941 508 YESF 511 (522)
Q Consensus 508 ~~~~ 511 (522)
++.+
T Consensus 390 ~~~~ 393 (395)
T TIGR03526 390 PTVY 393 (395)
T ss_pred HHHh
Confidence 8765
No 59
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=89.06 E-value=0.75 Score=48.64 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCcccccc--c--cccccCCCeEEEeecCcEEEEEEeCCcccCCCCceE
Q 009941 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNEN--D--EWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHI 133 (522)
Q Consensus 58 ~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~--~--~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~i 133 (522)
+.++..|-.=...||-+--+.++++++|++.||+.-... . .|..+++.+.+-..-|.||||...|+. ...+|
T Consensus 38 ~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~----~~~Il 113 (346)
T PRK10199 38 RHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKA----PQQII 113 (346)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCC----CCeEE
Confidence 334444444345566677789999999999999632110 0 121122221111123558999876643 24699
Q ss_pred EEEeccCCC
Q 009941 134 IAAHTDSPC 142 (522)
Q Consensus 134 i~AH~Dspg 142 (522)
++||+|+.+
T Consensus 114 l~AH~DTV~ 122 (346)
T PRK10199 114 IMAHLDTYA 122 (346)
T ss_pred EEEEcCcCC
Confidence 999999985
No 60
>PRK07522 acetylornithine deacetylase; Provisional
Probab=88.70 E-value=0.84 Score=48.05 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=43.4
Q ss_pred CCChHHHHhcCCCCcEEEecc-ccccccchhhhcCHHHHHHHHHHHHHHHhhc
Q 009941 460 GSTIGPILASGVGIRTVDCGI-AQLSMHSVREICGTEDIDIAYRHFKAFYESF 511 (522)
Q Consensus 460 GsTig~i~~s~~Gi~tidiGi-P~l~MHS~~E~~~~~Dv~~~~~l~~af~~~~ 511 (522)
|+|.+.++. ..|+|++.+|. +.-.+|++.|-+...|+...++++..++..+
T Consensus 332 ~~td~~~~~-~~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~~~~~~~~~~~~ 383 (385)
T PRK07522 332 YGTEAGLFQ-RAGIPTVVCGPGSIEQAHKPDEFVELAQLAACEAFLRRLLASL 383 (385)
T ss_pred eecchHHhc-cCCCCEEEECCCChhhCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 567777765 58999999997 3457999999999999999999999998765
No 61
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=88.21 E-value=0.84 Score=48.96 Aligned_cols=77 Identities=16% Similarity=-0.018 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc--ccccchhhhcCHHHHHHHHHHHHHHH
Q 009941 431 GVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 431 ~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~--l~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
..+...+++.+++.|+++-... ...+|+|.+.++.. .|+|++.+|... -.+|++.|-++.+|+...++++..++
T Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~---~~~~g~tDa~~~~~-~gip~v~~g~G~~~~~aH~~nE~i~i~~~~~~~~~~~~~~ 403 (410)
T PRK06133 328 RALAEHAQGIYGELGRRLEPID---MGTGGGTDAAFAAG-SGKAAVLEGFGLVGFGAHSNDEYIELNSIVPRLYLLTRMI 403 (410)
T ss_pred HHHHHHHHHHHHHcCCCccccc---cCCCCCchHHHHHh-cCCCceEecccCCCCCCCCCCcEEEcccHHHHHHHHHHHH
Confidence 3456667777777777643211 11356676666654 699999865433 55999999999999999999999888
Q ss_pred hhc
Q 009941 509 ESF 511 (522)
Q Consensus 509 ~~~ 511 (522)
.++
T Consensus 404 ~~~ 406 (410)
T PRK06133 404 MEL 406 (410)
T ss_pred HHh
Confidence 654
No 62
>PRK05111 acetylornithine deacetylase; Provisional
Probab=87.65 E-value=1.1 Score=47.12 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=43.1
Q ss_pred CCChHHHHhcCCCCcEEEecccc-ccccchhhhcCHHHHHHHHHHHHHHHhhc
Q 009941 460 GSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAFYESF 511 (522)
Q Consensus 460 GsTig~i~~s~~Gi~tidiGiP~-l~MHS~~E~~~~~Dv~~~~~l~~af~~~~ 511 (522)
++|.++++. +.|+|++.+|+.. =.+|++.|-++.+|+...++++..++..+
T Consensus 329 ~~~Da~~~~-~~g~p~v~~G~g~~~~~H~~~E~v~~~~l~~~~~i~~~~~~~~ 380 (383)
T PRK05111 329 YCTEAPFIQ-QLGCPTLVLGPGSIEQAHQPDEYLELSFIKPTRELLRQLIHHF 380 (383)
T ss_pred eeccHHHHH-hcCCCEEEECCCchHhCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 456677665 5899999999985 34899999999999999999999998765
No 63
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=87.28 E-value=2.3 Score=46.63 Aligned_cols=70 Identities=9% Similarity=-0.029 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEe
Q 009941 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (522)
Q Consensus 58 ~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH 137 (522)
.++.++|+++=..|+.+..+++++++.|++.||+ .. ++..| |+++...|.......+.+++.+|
T Consensus 7 ~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~-~~--------------~~~~~-n~~~~~~~~~g~~~~~~l~l~~H 70 (477)
T TIGR01893 7 FKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLE-VK--------------QDEVG-NVLIRKPATPGYENHPPIVLQGH 70 (477)
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCe-EE--------------EeCCC-eEEEEEcCCCCCCCCCeEEEEee
Confidence 3455566666434445578889999999999985 21 22335 89887655321111235999999
Q ss_pred ccCCCc
Q 009941 138 TDSPCL 143 (522)
Q Consensus 138 ~Dspg~ 143 (522)
+|.+..
T Consensus 71 lDtV~~ 76 (477)
T TIGR01893 71 MDMVCE 76 (477)
T ss_pred ccccCC
Confidence 998743
No 64
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=87.27 E-value=1.8 Score=46.12 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc-ccccchhhhcCHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~-l~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
+....+.+.+.+++ .|.+ - ... ..||++++.+.+. .|+|++..|... =-+|++.|-+..+|++.+++++..+
T Consensus 329 ~~~~v~~l~~~~~~~~g~~-~-~~~---~~G~~~da~~~~~-~~~~~~~fgp~~~~~~H~~~E~v~i~~l~~~~~~~~~~ 402 (409)
T COG0624 329 DSPLVAALAEAAEELLGLP-P-EVS---TGGGTHDARFFAR-LGIPAVIFGPGDIGLAHQPNEYVELEDLVKGAKVLARL 402 (409)
T ss_pred chHHHHHHHHHHHHhhCCC-c-eec---CCCCcchHHHHHh-cCCeeEEECCCCcccccCCCceeeHHHHHHHHHHHHHH
Confidence 45666666666665 5777 2 222 2344456666654 779999999988 6999999999999999999999999
Q ss_pred Hhhcc
Q 009941 508 YESFS 512 (522)
Q Consensus 508 ~~~~~ 512 (522)
+..+.
T Consensus 403 l~~l~ 407 (409)
T COG0624 403 LYELA 407 (409)
T ss_pred HHHHh
Confidence 98764
No 65
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=86.83 E-value=1.1 Score=46.64 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=41.5
Q ss_pred CCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHHH
Q 009941 459 CGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAFY 508 (522)
Q Consensus 459 gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af~ 508 (522)
.|+|.+.+++ ..|+|++.+|.-.. .+|++.|-++.+|+..+++++..|+
T Consensus 302 ~g~td~~~~~-~~Gip~v~~Gpg~~~~~H~~~E~v~i~~l~~~~~~~~~~~ 351 (352)
T PRK13007 302 YGWTDVARFS-ALGIPAVNFGPGDPALAHQRDEHVPVAQITACARILRRWL 351 (352)
T ss_pred cccchHHHHH-hCCCCEEEeCCCchhhccCCCCceEHHHHHHHHHHHHHHh
Confidence 4667776665 47999999997554 5999999999999999999999886
No 66
>PRK09104 hypothetical protein; Validated
Probab=86.40 E-value=1.9 Score=46.92 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCC-hHHHHhcCCCCcEEEecccc--ccccchhhhcCHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFK 505 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsT-ig~i~~s~~Gi~tidiGiP~--l~MHS~~E~~~~~Dv~~~~~l~~ 505 (522)
+..+...+.+.+++ .+.+.... ..||++ +...+....|||++.+|... -.+|++-|-++++|+..+++++.
T Consensus 381 ~~~~v~~l~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~gip~v~~g~G~~~~~aH~~nE~i~i~~l~~~~~~~~ 455 (464)
T PRK09104 381 DSPALAAAKAALSDEWGKPAVLI-----GSGGSIPIVGDFKRILGMDSLLVGFGLDDDRIHSPNEKYDLESFHKGIRSWA 455 (464)
T ss_pred CCHHHHHHHHHHHHHhCCCceec-----CCCCcHHHHHHHHHHhCCCEEEecCCCCCCCCcCCCCCcCHHHHHHHHHHHH
Confidence 44555666665554 56654432 124444 33333334799999998743 35999999999999999999999
Q ss_pred HHHhhcc
Q 009941 506 AFYESFS 512 (522)
Q Consensus 506 af~~~~~ 512 (522)
.++..+.
T Consensus 456 ~ll~~~~ 462 (464)
T PRK09104 456 RILAALA 462 (464)
T ss_pred HHHHHhh
Confidence 9987663
No 67
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=85.47 E-value=1.6 Score=49.48 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=59.0
Q ss_pred cCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccc--ccccchhhhcCHHHHHHHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 429 t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~--l~MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
.|+.+...+++.|++.|+++... ..+|||++.+++. .+.+++..|.-. -.+|++.|-++.+|+...++++..
T Consensus 508 ~d~~lv~~~~~aa~~~G~~~~~~-----~sggg~Da~~~a~-~~p~~mifgpg~~~g~sH~p~E~v~~edL~~g~~vl~~ 581 (591)
T PRK13590 508 SAPAWQQRWEAAVAALGLPLFRM-----PSGAGHDAMKLHE-IMPQAMLFVRGENAGISHNPLESSTADDMQLAVQAFQH 581 (591)
T ss_pred CCHHHHHHHHHHHHHcCCCcccC-----CcchhHHHHHHHH-HCCEEEEEEeeCCCCCCCCCccCCCHHHHHHHHHHHHH
Confidence 37788899999999999886532 2367788877765 455565454321 237999999999999999999999
Q ss_pred HHhhcc
Q 009941 507 FYESFS 512 (522)
Q Consensus 507 f~~~~~ 512 (522)
++..+.
T Consensus 582 ll~~l~ 587 (591)
T PRK13590 582 LLDQLA 587 (591)
T ss_pred HHHHHh
Confidence 987664
No 68
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=85.13 E-value=1.5 Score=47.06 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCC
Q 009941 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (522)
Q Consensus 74 ~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dsp 141 (522)
+..+.+++++.|++.||.- . ++..| ||+|...|..+ +...+++++|+|.+
T Consensus 39 e~~~~~~l~~~l~~~G~~v-~--------------~~~~g-Nl~a~~~g~~~--~~~~l~~~~H~DtV 88 (414)
T PRK12891 39 DREARDLFVAWARDAGCTV-R--------------VDAMG-NLFARRAGRDP--DAAPVMTGSHADSQ 88 (414)
T ss_pred HHHHHHHHHHHHHHCCCEE-E--------------ECCCC-CEEEEecCCCC--CCCeEEEEecccCC
Confidence 4668899999999999952 1 12335 89887766431 12359999999997
No 69
>PLN02280 IAA-amino acid hydrolase
Probab=85.00 E-value=5.4 Score=44.06 Aligned_cols=77 Identities=10% Similarity=-0.058 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccc--------cccccchhhhcCHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIA--------QLSMHSVREICGTEDIDIA 500 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP--------~l~MHS~~E~~~~~Dv~~~ 500 (522)
|+.....+++++.+ .|.+.-.. ....+|+|++.+++. ++|++..|+- ...+|++.|.++.+++...
T Consensus 388 ~~~l~~~~~~~a~~~~G~~~~~~---~~~~~g~tD~~~~~~--~vP~i~~glG~~~~~~G~~~~~Htp~e~id~~~L~~~ 462 (478)
T PLN02280 388 NDAMYEHVRKVAIDLLGPANFTV---VPPMMGAEDFSFYSQ--VVPAAFYYIGIRNETLGSTHTGHSPYFMIDEDVLPIG 462 (478)
T ss_pred CHHHHHHHHHHHHHhcCcccccc---CCCCeeechHHHHHh--hCCEEEEEEeecCCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 67788888888865 35442111 112356676666654 4999977422 2368999999999999999
Q ss_pred HHHHHHHHhhc
Q 009941 501 YRHFKAFYESF 511 (522)
Q Consensus 501 ~~l~~af~~~~ 511 (522)
++++..+..++
T Consensus 463 ~~~~~~~~~~~ 473 (478)
T PLN02280 463 AAVHAAIAERY 473 (478)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 70
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=84.95 E-value=1.3 Score=50.15 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=24.9
Q ss_pred eEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCC
Q 009941 106 GYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (522)
Q Consensus 106 k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dsp 141 (522)
++.+|..| |+++...|..+ +.+.+++++|+|++
T Consensus 231 ~v~~D~~G-Nl~~~~~g~~~--~~~~v~~gsHlDTV 263 (591)
T PRK13590 231 EVHIDAVG-NVVGRYKGSTP--QAKRLLTGSHYDTV 263 (591)
T ss_pred eeeECCCC-CEEEEecCCCC--CCCeEEEecccccC
Confidence 45667777 99998777542 23469999999998
No 71
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=84.86 E-value=1.8 Score=45.05 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=39.5
Q ss_pred CCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHH
Q 009941 459 CGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 459 gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
+++|.+.++.. .|||++.+|.-.. -+|++.|-++.+|+..+++++..+
T Consensus 315 ~~~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~~~~~~~~ 363 (364)
T TIGR01892 315 SYGTEAPQFQE-LGAEAVVCGPGDIRQAHQPDEYVEIEDLVRCRAVLARL 363 (364)
T ss_pred cccccHHHHHh-CCCcEEEECCCChHhCCCCCceeeHHHHHHHHHHHHHh
Confidence 35677777654 7999999997553 489999999999999999988765
No 72
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=84.66 E-value=1.3 Score=50.13 Aligned_cols=81 Identities=10% Similarity=-0.056 Sum_probs=50.9
Q ss_pred HHHHH-HHHHhhccCCChHHHHHHHHHHHHHCC---Cc------cccccc------cc---cccC-CCe-EEEeecCcEE
Q 009941 58 SSIVG-DLLDYLNESWTPFHATAEAKRLLIDAG---FE------LLNEND------EW---ELKP-GGG-YFFTRNMSCL 116 (522)
Q Consensus 58 ~~~a~-~~~~fl~~s~T~~hav~~~~~~L~~~G---F~------el~e~~------~w---~l~~-g~k-~~~~r~g~~l 116 (522)
.+++. +|.+.+..-|+-..-+..-...|.+-| +. .+.-++ .| .++. |-. +.+|..| ||
T Consensus 162 ~~I~~~Rl~~l~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~g-Nv 240 (591)
T PRK13799 162 GRIAEIRINDKFGYTPAIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVG-NV 240 (591)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCC-CE
Confidence 33444 677778888877766666666665543 22 222111 12 1233 644 8888888 99
Q ss_pred EEEEeCCcccCCCCceEEEEeccCC
Q 009941 117 VAFAVGQKYSVGNGFHIIAAHTDSP 141 (522)
Q Consensus 117 iAf~~G~~~~~~~g~~ii~AH~Dsp 141 (522)
++...|..+ +.+.+++++|+|++
T Consensus 241 ~~~~~g~~~--~~p~v~~gSHlDTV 263 (591)
T PRK13799 241 VGRYKAADD--DAKTLITGSHYDTV 263 (591)
T ss_pred EEEcCCCCC--CCCeEEEecccccc
Confidence 998767542 23469999999999
No 73
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=83.90 E-value=1.7 Score=47.52 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc-cccchhhhcCHHHHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 507 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l-~MHS~~E~~~~~Dv~~~~~l~~af 507 (522)
+..+.+.+.+.+++ .|.+.+... -+|+|.+.++. .||+++.+|..-. .+|++.|-++.+++..++++|..+
T Consensus 388 ds~lv~~l~~a~~~v~G~~~~~~~-----~~ggTDa~~~~--~~i~~gv~gPG~~~~aH~~dE~V~i~el~~a~~iy~~~ 460 (466)
T TIGR01886 388 SDPLVQTLLKVYEKHTGKKGHEVI-----IGGGTYGRLLE--RGVAYGAMFEGGPDVMHQANEFMMLDDLILAAAIYAEA 460 (466)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----ecCccHHHhcc--cccccccccCCCCCCccCCCcceEHHHHHHHHHHHHHH
Confidence 34566666666665 355544432 25778887775 3799888888754 489999999999999999999999
Q ss_pred Hhhc
Q 009941 508 YESF 511 (522)
Q Consensus 508 ~~~~ 511 (522)
+..|
T Consensus 461 i~~l 464 (466)
T TIGR01886 461 IYEL 464 (466)
T ss_pred HHHH
Confidence 8776
No 74
>PRK08201 hypothetical protein; Provisional
Probab=83.66 E-value=3.2 Score=45.06 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCCh---HHHHhcCCCCcEEEecccc--ccccchhhhcCHHHHHHHHHHH
Q 009941 431 GVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTI---GPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHF 504 (522)
Q Consensus 431 ~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTi---g~i~~s~~Gi~tidiGiP~--l~MHS~~E~~~~~Dv~~~~~l~ 504 (522)
..+...+.+.+++ .|.+.... .+|+|+ +.+. ...|+|++.+|.-. -.+|++.|-+..+|+..+++++
T Consensus 374 ~~~~~~l~~a~~~~~g~~~~~~------~~gg~~~~~~~~~-~~~gip~v~~GpG~~~~~~H~~nE~v~i~~l~~~~~~l 446 (456)
T PRK08201 374 HPAIQAAARAYEAVYGTEAAFT------RMGGSIPVVETFS-SQLHIPIVLMGFGLPSENFHAPNEHFHLENFDKGLRTL 446 (456)
T ss_pred CHHHHHHHHHHHHHhCCCceec------CCCCcHHHHHHHH-HHhCCCEEEecCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 3445555555554 46654322 134453 4443 34799999997653 5689999999999999999999
Q ss_pred HHHHhhcc
Q 009941 505 KAFYESFS 512 (522)
Q Consensus 505 ~af~~~~~ 512 (522)
..|+..+.
T Consensus 447 ~~~~~~~~ 454 (456)
T PRK08201 447 VEYWHQLA 454 (456)
T ss_pred HHHHHHhh
Confidence 99998764
No 75
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=81.91 E-value=2.5 Score=45.18 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCCC
Q 009941 73 TPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (522)
Q Consensus 73 T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dspg 142 (522)
-+..+.+++++.|++.||+- . ++..+ ||+|...|+.+ +...+++++|+|.+.
T Consensus 29 ~e~~~~~~l~~~~~~~G~~~-~--------------~~~~~-nl~a~~~g~~~--~~~~l~~~~H~DtV~ 80 (401)
T TIGR01879 29 EDREAQDLFKKRMRAAGLEV-R--------------FDEVG-NLIGRKEGTEP--PLEVVLSGSHIDTVV 80 (401)
T ss_pred HHHHHHHHHHHHHHHCCCEE-E--------------EecCC-cEEEEecCCCC--CCCEEEEecccccCC
Confidence 35668899999999999962 1 12235 89998755432 123599999999984
No 76
>PRK06156 hypothetical protein; Provisional
Probab=80.69 E-value=3.8 Score=45.58 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHH-HCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccc----cccchhhhcCHHHHHHHHHHHH
Q 009941 431 GVTAFLFKEIAK-LHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL----SMHSVREICGTEDIDIAYRHFK 505 (522)
Q Consensus 431 ~~~~a~l~~ia~-~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l----~MHS~~E~~~~~Dv~~~~~l~~ 505 (522)
..+...+.+.++ ..|.+..... .+|+|.+.++. +++.+|.-.. .||++.|-+.++++...++++.
T Consensus 439 ~~lv~~l~~a~~~~~G~~~~~~~-----~~ggTDa~~~~-----~~v~fGP~~~g~~~~aHt~dE~V~ie~l~~~~~i~~ 508 (520)
T PRK06156 439 GPWLKTLLDVFGHFTGLDAKPVA-----IAGSTNAKLFP-----NAVSFGPAMPGVKYTGHTENEFKTVEQFMLDLQMYT 508 (520)
T ss_pred CHHHHHHHHHHHHHhCCCCceee-----ecChhhhhhCC-----ccEEEcCCCCCCCCCCcCcccCCCHHHHHHHHHHHH
Confidence 344455544444 3466544332 25777776642 5788886332 3899999999999999999999
Q ss_pred HHHhhccc
Q 009941 506 AFYESFSS 513 (522)
Q Consensus 506 af~~~~~~ 513 (522)
.++..+..
T Consensus 509 ~~l~~l~~ 516 (520)
T PRK06156 509 EMLIRIGN 516 (520)
T ss_pred HHHHHHhc
Confidence 99988765
No 77
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=80.68 E-value=6.3 Score=41.09 Aligned_cols=73 Identities=16% Similarity=0.065 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEe
Q 009941 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (522)
Q Consensus 58 ~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH 137 (522)
.++-++|+++=..|+.++.+.+++++.|++.||+ ... ....+ + ..+..|++|...|+.. .+.+++.+|
T Consensus 3 ~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~-~~~---~~~~~-~----~~~~~~~~~~~~g~~~---~~~i~l~~H 70 (361)
T TIGR01883 3 KKYFLELIQIDSESGKEKAILTYLKKQITKLGIP-VSL---DEVPA-E----VSNDNNLIARLPGTVK---FDTIFFCGH 70 (361)
T ss_pred HHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCE-EEE---ecccc-c----cCCCceEEEEEeCCCC---CCcEEEEee
Confidence 3455677777777888999999999999999996 211 11111 1 0122478887655431 235999999
Q ss_pred ccCCC
Q 009941 138 TDSPC 142 (522)
Q Consensus 138 ~Dspg 142 (522)
+|.+-
T Consensus 71 ~D~V~ 75 (361)
T TIGR01883 71 MDTVP 75 (361)
T ss_pred ccccC
Confidence 99864
No 78
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=80.07 E-value=5 Score=42.92 Aligned_cols=54 Identities=19% Similarity=0.036 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCCC
Q 009941 71 SWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (522)
Q Consensus 71 s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dspg 142 (522)
++.+..+++++.++|++.||+- . . +..+ ||+|...|... ..+.+++.+|+|.+.
T Consensus 34 ~~~e~~~~~~l~~~l~~~G~~~-~---~-----------~~~~-nlia~~~g~~~--~~~~l~~~~H~DtVp 87 (414)
T PRK12890 34 SDEERAARALLAAWMRAAGLEV-R---R-----------DAAG-NLFGRLPGRDP--DLPPLMTGSHLDTVP 87 (414)
T ss_pred CHHHHHHHHHHHHHHHHCCCEE-E---E-----------cCCC-cEEEEeCCCCC--CCCEEEEeCcccCCC
Confidence 5567889999999999999962 1 1 1124 89987655421 123599999999984
No 79
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=80.04 E-value=7 Score=43.25 Aligned_cols=69 Identities=12% Similarity=-0.014 Sum_probs=43.4
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEecc
Q 009941 60 IVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTD 139 (522)
Q Consensus 60 ~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~D 139 (522)
+-+++++.=.-|..+-.+.+++.+.|++.||+ +.++..| |+++.+.+.........+++.+|||
T Consensus 15 ~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~---------------~~~d~~g-nvi~~~~~~~g~~~~~~v~l~gH~D 78 (485)
T PRK15026 15 IFAKICSIPHPSYHEEQLAEYIVGWAKEKGFH---------------VERDQVG-NILIRKPATAGMENRKPVVLQAHLD 78 (485)
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCE---------------EEEEecC-eEEEEEcCCCCCCCCCEEEEEeeec
Confidence 34444444444455667788888899999984 2234456 7888764421111123599999999
Q ss_pred CCCce
Q 009941 140 SPCLK 144 (522)
Q Consensus 140 spg~~ 144 (522)
-++-.
T Consensus 79 tV~~~ 83 (485)
T PRK15026 79 MVPQK 83 (485)
T ss_pred ccCCC
Confidence 98764
No 80
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=78.89 E-value=6.2 Score=45.62 Aligned_cols=152 Identities=20% Similarity=0.129 Sum_probs=87.9
Q ss_pred ccccCCCCeeeccCCCchhhHHHHHHHHH---HcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHH
Q 009941 291 CLGGANNEFIFSGRLDNLASSYCGLRALI---DSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVG 367 (522)
Q Consensus 291 ~~~Gl~~e~I~s~~LDnr~~~~a~l~al~---~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~ 367 (522)
.++|.+++=+.-++.|.=.|+..+++.-+ ...+. .. .+..+.+++.+|-||-|+.|++=- .+
T Consensus 355 ViigahrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~--gw-rP~RtI~F~sWdAeEfGliGStE~----~E-------- 419 (702)
T KOG2195|consen 355 VIIGAHRDSWTFGAIDPNSGTALLLEIARALSKLKKR--GW-RPRRTILFASWDAEEFGLLGSTEW----AE-------- 419 (702)
T ss_pred EEEeccccccccCCcCCCccHHHHHHHHHHHHHHHHc--CC-CccceEEEEEccchhccccccHHH----HH--------
Confidence 45566665555569999999877754332 23222 11 245578999999999999987722 11
Q ss_pred hcCCCCCChhHHHHHhhccceEEEecCCCCCCCCCcccccCCCCcCCCccEEEEcCCCCcccCHHHHHHHHHHHHHCCCC
Q 009941 368 SLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLP 447 (522)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~S~~IS~DvahA~hPn~~~~~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l~~ia~~~gIp 447 (522)
.+...+....+.-.|+..++=|| .+. +-.|++.+..+++++++...=|
T Consensus 420 ----------~~~~~L~~~av~yin~d~~~~~~--------------~~l--------~~~~~PlL~~li~~~~k~~~~p 467 (702)
T KOG2195|consen 420 ----------EYLKNLKSRAVVYINVDNAVLGD--------------YTL--------HVKTTPLLTDLIEEAAKSVLSP 467 (702)
T ss_pred ----------HHHHHhhheeEEEEeccccccCC--------------cee--------EEecCccHHHHHHHHHhccCCC
Confidence 22222333333334433333222 222 2235788888999999886555
Q ss_pred eeEEE---eccCCCCCCChHHHHhcCCCCcEEEecc--ccccccchhhh
Q 009941 448 TQEFV---VRNDMGCGSTIGPILASGVGIRTVDCGI--AQLSMHSVREI 491 (522)
Q Consensus 448 ~Q~~~---~r~D~~gGsTig~i~~s~~Gi~tidiGi--P~l~MHS~~E~ 491 (522)
.-... +... ++||...+++. ..|||++++-- +.=.-||..++
T Consensus 468 ~~~~~~~~v~~~-g~~Sd~~~F~~-~~GIpsv~~~f~~~yP~yhs~~dt 514 (702)
T KOG2195|consen 468 DKGDQSNRVLSL-GGGSDYASFLQ-FAGIPSVDFAFNRTYPFYHSTYDT 514 (702)
T ss_pred CccccceeEecc-CCCCcchhhcc-ccCcceeeeeecCCcceeecccCc
Confidence 44333 2222 44455556655 48999998743 33346777766
No 81
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=78.60 E-value=6.1 Score=42.12 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCC
Q 009941 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (522)
Q Consensus 74 ~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dsp 141 (522)
+..+++++.++|++.||+ .. ++..+ |++|...|..+ ...+++.+|+|.+
T Consensus 38 e~~~~~~l~~~l~~~G~~-~~--------------~~~~~-nl~a~~~g~~~---~~~l~l~gH~DtV 86 (412)
T PRK12892 38 HVAARRRLAAWCEAAGLA-VR--------------IDGIG-NVFGRLPGPGP---GPALLVGSHLDSQ 86 (412)
T ss_pred HHHHHHHHHHHHHHcCCE-EE--------------EcCCC-cEEEEecCCCC---CCeEEEEccccCC
Confidence 678889999999999995 21 11234 89887655432 2359999999987
No 82
>PRK07205 hypothetical protein; Provisional
Probab=78.13 E-value=4.8 Score=43.59 Aligned_cols=72 Identities=13% Similarity=0.025 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecc--c--cccccchhhhcCHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGI--A--QLSMHSVREICGTEDIDIAYRHF 504 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGi--P--~l~MHS~~E~~~~~Dv~~~~~l~ 504 (522)
|..+...+++++++ .|.+.-... .+|+|.+. ...+++.+|. | ...+|++.|-+..+|++.+++++
T Consensus 365 ~~~lv~~l~~~~~~~~g~~~~~~~-----~gg~~~~~-----~~~~~i~~G~~~Pg~~~~aH~~nE~v~i~~l~~~~~~l 434 (444)
T PRK07205 365 DSELVSTLMSVYQEKTGDDSPAQS-----SGGATFAR-----TMPNCVAFGALFPGAPQTEHQANEHIVLEDLYRAMDIY 434 (444)
T ss_pred CcHHHHHHHHHHHHHhCCCCceEE-----eccHHHHH-----hCCCcEEECCccCCCCCCCcCcccCccHHHHHHHHHHH
Confidence 55666777777765 455432221 13444332 2347888994 4 36799999999999999999999
Q ss_pred HHHHhhc
Q 009941 505 KAFYESF 511 (522)
Q Consensus 505 ~af~~~~ 511 (522)
..++.++
T Consensus 435 ~~~l~~l 441 (444)
T PRK07205 435 AEAIYRL 441 (444)
T ss_pred HHHHHHH
Confidence 9998765
No 83
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=77.68 E-value=2.9 Score=43.98 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=34.2
Q ss_pred eecc-CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 300 IFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 300 I~s~-~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
|.|+ ..||..++.++|.|+..+..... ......+++++..||+|+.|+.
T Consensus 98 i~grG~~D~k~~~a~~l~a~~~l~~~~~---~~~~~i~~~~~~~EE~g~~G~~ 147 (375)
T TIGR01910 98 LYGRGATDMKGGLVALLYALKAIREAGI---KPNGNIILQSVVDEESGEAGTL 147 (375)
T ss_pred EEecCccccchHHHHHHHHHHHHHHcCC---CCCccEEEEEEcCcccCchhHH
Confidence 4444 46999999999998877643210 1234578889999999976554
No 84
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=77.52 E-value=7.1 Score=40.73 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~A 136 (522)
+.++.++|+++=..++.+..+.+++.++|++.||+. +.+..| |++|.. |+. .+.+++.+
T Consensus 8 ~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~---------------~~~~~~-n~i~~~-~~~----~~~l~~~~ 66 (348)
T PRK04443 8 ARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREA---------------WVDEAG-NARGPA-GDG----PPLVLLLG 66 (348)
T ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEE---------------EEcCCC-cEEEEc-CCC----CCEEEEEe
Confidence 455777888888888888999999999999999962 112224 677764 432 23599999
Q ss_pred eccCCC
Q 009941 137 HTDSPC 142 (522)
Q Consensus 137 H~Dspg 142 (522)
|+|-+.
T Consensus 67 H~DtVp 72 (348)
T PRK04443 67 HIDTVP 72 (348)
T ss_pred eccccC
Confidence 999874
No 85
>PRK07907 hypothetical protein; Provisional
Probab=77.44 E-value=6.7 Score=42.51 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCC-h-HHHHhcCCCCcEEEecccc--ccccchhhhcCHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-I-GPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHF 504 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsT-i-g~i~~s~~Gi~tidiGiP~--l~MHS~~E~~~~~Dv~~~~~l~ 504 (522)
|..+...+.+.+++ .|.+..... .||++ . +.+.....++|++..|.-. -.+|++.|-++++|+..+++++
T Consensus 365 ~~~~~~~l~~a~~~~~g~~~~~~~-----~~g~~~~~~~~~~~~~~~~~v~~Gpg~~~~~aH~~nE~i~i~~l~~~~~~~ 439 (449)
T PRK07907 365 SGPAYDAARAAMREAWGKDPVDMG-----MGGSIPFIAELQEAFPQAEILVTGVEDPKTRAHSPNESVHLGELERAAVAE 439 (449)
T ss_pred CCHHHHHHHHHHHHHhCCCceecC-----CCCcHHHHHHHHHhcCCCcEEEeccCCCCCCCcCCCCCcCHHHHHHHHHHH
Confidence 44455555555544 477654211 23332 1 2223333468999898754 4689999999999999999999
Q ss_pred HHHHhhcc
Q 009941 505 KAFYESFS 512 (522)
Q Consensus 505 ~af~~~~~ 512 (522)
.++++.|.
T Consensus 440 ~~~l~~~~ 447 (449)
T PRK07907 440 ALLLARLA 447 (449)
T ss_pred HHHHHHHh
Confidence 99998874
No 86
>PRK08262 hypothetical protein; Provisional
Probab=77.28 E-value=3.4 Score=45.32 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHCC--CCeeEEEeccCCCCCCChHHHHhcCC----CCcEEEeccc-cccccchhhhcCHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKLHN--LPTQEFVVRNDMGCGSTIGPILASGV----GIRTVDCGIA-QLSMHSVREICGTEDIDIAYR 502 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~g--Ip~Q~~~~r~D~~gGsTig~i~~s~~----Gi~tidiGiP-~l~MHS~~E~~~~~Dv~~~~~ 502 (522)
|..+...+++.+++.. .+..... .+|||++.++.... +++++..|.- .-.+|++.|-+..+|+...++
T Consensus 400 ~~~lv~~l~~a~~~~~g~~~~~~~~-----~~g~tDa~~~~~~~p~~~~~~~~~~gpg~~~~~Ht~dE~i~i~~l~~~~~ 474 (486)
T PRK08262 400 DSAAYKLLAATIREVFPDVVVAPYL-----VVGATDSRHYSGISDNVYRFSPLRLSPEDLARFHGTNERISVANYARMIR 474 (486)
T ss_pred CCHHHHHHHHHHHHHCCCCccccce-----ecccccHHHHHHhcCCeEEECCccCCcccccCCCCCCCceeHHHHHHHHH
Confidence 5667777888887654 3433221 25778887766431 2344444432 245899999999999999999
Q ss_pred HHHHHHhhcc
Q 009941 503 HFKAFYESFS 512 (522)
Q Consensus 503 l~~af~~~~~ 512 (522)
++..++..+.
T Consensus 475 i~~~~l~~~~ 484 (486)
T PRK08262 475 FYYRLIENAA 484 (486)
T ss_pred HHHHHHHHhh
Confidence 9999987763
No 87
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=76.76 E-value=2.7 Score=44.46 Aligned_cols=41 Identities=17% Similarity=0.029 Sum_probs=31.7
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 305 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 305 LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
.|++.++.++|.|+..+... .....+++++..||+|+.|+.
T Consensus 113 ~D~k~~~~~~l~a~~~l~~~------~~~~v~~~~~~~EE~g~~G~~ 153 (394)
T PRK08651 113 SDMKGGIAALLAAFERLDPA------GDGNIELAIVPDEETGGTGTG 153 (394)
T ss_pred cccchHHHHHHHHHHHHHhc------CCCCEEEEEecCccccchhHH
Confidence 79999999999998877532 134577889999999975543
No 88
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=76.70 E-value=7.4 Score=40.26 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=43.2
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEecc
Q 009941 60 IVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTD 139 (522)
Q Consensus 60 ~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~D 139 (522)
+.++|++.=..|+.+..+++++++.|++.||.- . .+..| |+++.. |.. .+.+++.+|+|
T Consensus 2 ~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~-~--------------~~~~~-~~~~~~-~~~----~~~i~~~~H~D 60 (336)
T TIGR01902 2 LLKDLLEIYSPSGKEANAAKFLEEISKDLGLKL-I--------------IDDAG-NFILGK-GDG----HKKILLAGHVD 60 (336)
T ss_pred hHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEE-E--------------ECCCC-cEEEEe-CCC----CceEEEEcccc
Confidence 345666666677788899999999999999963 1 11234 666643 322 23599999999
Q ss_pred CCC
Q 009941 140 SPC 142 (522)
Q Consensus 140 spg 142 (522)
-+.
T Consensus 61 ~vp 63 (336)
T TIGR01902 61 TVP 63 (336)
T ss_pred ccC
Confidence 873
No 89
>PRK06837 acetylornithine deacetylase; Provisional
Probab=75.51 E-value=6.5 Score=42.36 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccc--ccccccc--CC-CeE--EEeecCcEEEEEEeCCcccCCC
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNE--NDEWELK--PG-GGY--FFTRNMSCLVAFAVGQKYSVGN 129 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e--~~~w~l~--~g-~k~--~~~r~g~~liAf~~G~~~~~~~ 129 (522)
..++.++|+++=.-|+.+..+.++++++|++.||. ... ...+.+. ++ +++ ..+. ..||+|...|+.+ ..
T Consensus 22 ~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nl~a~~~g~~~--~~ 97 (427)
T PRK06837 22 QVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYE-VDRWSIDPDDLKSHPGAGPVEIDYSG-APNVVGTYRPAGK--TG 97 (427)
T ss_pred HHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCc-eEEecCCHHHhhhcccccccccccCC-CceEEEEecCCCC--CC
Confidence 34456677777778888899999999999999996 221 1111111 11 011 1222 2488887655431 12
Q ss_pred CceEEEEeccCC
Q 009941 130 GFHIIAAHTDSP 141 (522)
Q Consensus 130 g~~ii~AH~Dsp 141 (522)
..+++.+|+|.+
T Consensus 98 ~~il~~gH~DvV 109 (427)
T PRK06837 98 RSLILQGHIDVV 109 (427)
T ss_pred CeEEEEeecccC
Confidence 249999999987
No 90
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=75.37 E-value=9.2 Score=40.77 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCCC
Q 009941 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (522)
Q Consensus 74 ~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dspg 142 (522)
++.+++++++.|++.||+- . ++..+ |++|...|... ....+++.+|+|.+-
T Consensus 39 e~~~~~~l~~~l~~~G~~~-~--------------~~~~~-n~~a~~~g~~~--~~~~l~l~~H~DtVp 89 (412)
T PRK12893 39 DREARDLLAQWMEEAGLTV-S--------------VDAIG-NLFGRRAGTDP--DAPPVLIGSHLDTQP 89 (412)
T ss_pred HHHHHHHHHHHHHHcCCEE-E--------------EcCCC-cEEEEeCCCCC--CCCEEEEEecccCCC
Confidence 6888999999999999962 1 11224 78887756431 123599999999963
No 91
>PRK08596 acetylornithine deacetylase; Validated
Probab=75.36 E-value=3.8 Score=44.03 Aligned_cols=46 Identities=17% Similarity=-0.036 Sum_probs=32.8
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
+..|++.++.+++.|+..+..... ......+++++..||.|+.|+.
T Consensus 115 G~~D~Kgg~a~~l~a~~~l~~~~~---~~~~~v~~~~~~dEE~g~~G~~ 160 (421)
T PRK08596 115 GAADMKGGLAGALFAIQLLHEAGI---ELPGDLIFQSVIGEEVGEAGTL 160 (421)
T ss_pred cccccchHHHHHHHHHHHHHHcCC---CCCCcEEEEEEeccccCCcCHH
Confidence 446999999999998887753211 1234578889999999876543
No 92
>PRK07473 carboxypeptidase; Provisional
Probab=75.27 E-value=3.3 Score=43.90 Aligned_cols=45 Identities=27% Similarity=0.251 Sum_probs=31.7
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga 350 (522)
...|++.++.++|.|+..+...... ......++++..||+|+.|+
T Consensus 109 G~~D~Kgglaa~l~A~~~l~~~~~~---~~~~v~~~~~~dEE~g~~g~ 153 (376)
T PRK07473 109 GILDMKGGNYLALEAIRQLARAGIT---TPLPITVLFTPDEEVGTPST 153 (376)
T ss_pred chhhchHHHHHHHHHHHHHHHcCCC---CCCCEEEEEeCCcccCCccH
Confidence 3489999999999988776432101 12246778999999998654
No 93
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=75.09 E-value=3.4 Score=43.04 Aligned_cols=42 Identities=19% Similarity=0.003 Sum_probs=31.6
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
+..|++.++.+++.|+..+... .....++++..||.|+.|..
T Consensus 89 G~~DmKgg~aa~l~a~~~l~~~-------~~~i~~~~~~dEE~g~~G~~ 130 (346)
T PRK00466 89 GAVDAKGPLISMIIAAWLLNEK-------GIKVMVSGLADEESTSIGAK 130 (346)
T ss_pred CccccchHHHHHHHHHHHHHHc-------CCCEEEEEEcCcccCCccHH
Confidence 4589999999999998877432 12357789999999876543
No 94
>PRK07338 hypothetical protein; Provisional
Probab=75.03 E-value=19 Score=38.14 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhc-cCCCh-----HHHHHHHHHHHHHCCCcccccccccccc-------CCCeEEEeecCcEEEEEEeCC
Q 009941 57 SSSIVGDLLDYLN-ESWTP-----FHATAEAKRLLIDAGFELLNENDEWELK-------PGGGYFFTRNMSCLVAFAVGQ 123 (522)
Q Consensus 57 ~~~~a~~~~~fl~-~s~T~-----~hav~~~~~~L~~~GF~el~e~~~w~l~-------~g~k~~~~r~g~~liAf~~G~ 123 (522)
..++.+.|.++++ .|++. ..+.++++++|++.||+ .. .|... ++ +.+....+.||+|...|+
T Consensus 16 ~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~-~~---~~~~~~~~~~~~~~-~~~~~~~~~nl~a~~~~~ 90 (402)
T PRK07338 16 QAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGE-IE---LIPLPPVEVIDADG-RTLEQAHGPALHVSVRPE 90 (402)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCc-EE---EecCCccccccccc-cccccCcCCeEEEEECCC
Confidence 3446667777776 34442 35788899999999996 22 22111 11 111122234899875332
Q ss_pred cccCCCCceEEEEeccCC
Q 009941 124 KYSVGNGFHIIAAHTDSP 141 (522)
Q Consensus 124 ~~~~~~g~~ii~AH~Dsp 141 (522)
. .+.+++.+|+|-+
T Consensus 91 ~----~~~lll~gH~DvV 104 (402)
T PRK07338 91 A----PRQVLLTGHMDTV 104 (402)
T ss_pred C----CccEEEEeecCcc
Confidence 1 2249999999965
No 95
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=74.21 E-value=9.4 Score=40.01 Aligned_cols=67 Identities=19% Similarity=0.114 Sum_probs=46.3
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEec
Q 009941 59 SIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHT 138 (522)
Q Consensus 59 ~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~ 138 (522)
++..+|++.=..|.-+..+++++.+.|++.||+- . .| .+ ..+ |++|...++.+ .+.+++.+|+
T Consensus 3 ~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~-~---~~--~~-------~~~-~vva~~~~~~~---~~~i~l~gH~ 65 (363)
T TIGR01891 3 DIRRHLHEHPELSFEEFKTSSLIAEALESLGIEV-R---RG--VG-------GAT-GVVATIGGGKP---GPVVALRADM 65 (363)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCce-E---ec--CC-------CCc-EEEEEEeCCCC---CCEEEEEecc
Confidence 4566777776777778999999999999999962 2 11 11 123 78887544321 2359999999
Q ss_pred cCCC
Q 009941 139 DSPC 142 (522)
Q Consensus 139 Dspg 142 (522)
|-+.
T Consensus 66 DtVp 69 (363)
T TIGR01891 66 DALP 69 (363)
T ss_pred CCCC
Confidence 9864
No 96
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=74.16 E-value=3.9 Score=43.00 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~A 136 (522)
+.++.++|+++=.-|..+..+.+++.+.|++.||.. . .+...+ .+.|++|.. |+. ...+++.+
T Consensus 4 ~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~-~---~~~~~~--------~~~~l~a~~-g~~----~~~il~~~ 66 (377)
T PRK08588 4 KIQILADIVKINSVNDNEIEVANYLQDLFAKHGIES-K---IVKVND--------GRANLVAEI-GSG----SPVLALSG 66 (377)
T ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCce-E---EEecCC--------CCceEEEEe-CCC----CceEEEEe
Confidence 345667777777778889999999999999999962 1 111111 123787764 532 13599999
Q ss_pred eccCC
Q 009941 137 HTDSP 141 (522)
Q Consensus 137 H~Dsp 141 (522)
|+|-+
T Consensus 67 H~DtV 71 (377)
T PRK08588 67 HMDVV 71 (377)
T ss_pred eeccc
Confidence 99976
No 97
>PRK06915 acetylornithine deacetylase; Validated
Probab=73.87 E-value=4.5 Score=43.33 Aligned_cols=49 Identities=16% Similarity=0.004 Sum_probs=33.5
Q ss_pred eeeccCC-CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccc
Q 009941 299 FIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (522)
Q Consensus 299 ~I~s~~L-Dnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga 350 (522)
.+.|.+- |++.++.++|.|+..++..... ......++++..||+|+.|+
T Consensus 126 ~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~---~~~~v~~~~~~dEE~g~~G~ 175 (422)
T PRK06915 126 RIYGRGTTDMKGGNVALLLAMEALIESGIE---LKGDVIFQSVIEEESGGAGT 175 (422)
T ss_pred EEEecCcccchHHHHHHHHHHHHHHHcCCC---CCCcEEEEEecccccCCcch
Confidence 4555555 9999999998887766432111 23346778889999998654
No 98
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=73.80 E-value=9.8 Score=39.82 Aligned_cols=67 Identities=18% Similarity=0.057 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~A 136 (522)
+.++.++|+..-.-||.++.+.+++++.|++.||+. . .+ .. ...+ |+++.. |.. ...+++.+
T Consensus 4 ~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~-~---~~--~~------~~~~-n~~~~~-g~~----~~~i~l~~ 65 (375)
T PRK13009 4 VLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTC-E---RM--DF------GDVK-NLWARR-GTE----GPHLCFAG 65 (375)
T ss_pred HHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeE-E---Ee--cc------CCCc-EEEEEe-cCC----CCEEEEEe
Confidence 345778888888888999999999999999999962 1 11 11 1123 788754 542 23599999
Q ss_pred eccCC
Q 009941 137 HTDSP 141 (522)
Q Consensus 137 H~Dsp 141 (522)
|+|.+
T Consensus 66 H~D~V 70 (375)
T PRK13009 66 HTDVV 70 (375)
T ss_pred ecccC
Confidence 99987
No 99
>PRK13381 peptidase T; Provisional
Probab=73.77 E-value=4.6 Score=43.03 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=31.9
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 305 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 305 LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
-|+..++.++|.|+..+... . ......+++|+..||+|+.|+.
T Consensus 137 ~DmKgg~aa~l~a~~~l~~~--~--~~~g~i~~~~~~dEE~g~~G~~ 179 (404)
T PRK13381 137 ADNKAAIAVVMTLLENLTEN--E--VEHGDIVVAFVPDEEIGLRGAK 179 (404)
T ss_pred cccHHHHHHHHHHHHHHHhc--C--CCCCCEEEEEEcccccccccHH
Confidence 69999999999988876432 1 1234578889999999876544
No 100
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=73.59 E-value=4.3 Score=42.22 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=33.8
Q ss_pred eeecc-CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 299 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 299 ~I~s~-~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
.|.|+ ..|++.++.++|.|+..+.+. .+ .....++|+..||+|+.|+.
T Consensus 90 ~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~---~~~v~~~~~~~EE~g~~G~~ 138 (364)
T TIGR01892 90 RLYGRGTCDMKGFLACALAAAPDLAAE--QL---KKPLHLALTADEEVGCTGAP 138 (364)
T ss_pred EEEecCccccchHHHHHHHHHHHHHhc--Cc---CCCEEEEEEeccccCCcCHH
Confidence 34443 479999999999888776432 12 33467889999999986544
No 101
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=73.52 E-value=4.8 Score=43.25 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=54.4
Q ss_pred eeccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCCccHHHHHHHHHHhcCCCCCChhHH
Q 009941 300 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSF 379 (522)
Q Consensus 300 I~s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~dvl~ri~~~~~~~~~~~~~~ 379 (522)
+.-++.||-.|+.++|+..+.++.. .++....+++|.-||.|.+|++-.......+..+.+
T Consensus 222 ~~~GA~DNasGva~llEiAr~l~~~-----~p~~~v~f~~~~aEE~Gl~GS~~~~~~~~~~~~~~~-------------- 282 (435)
T COG2234 222 TGPGADDNASGVAALLELARVLKGN-----PPKRTVRFVAFGAEESGLLGSEAYVKRLSKDLDKKI-------------- 282 (435)
T ss_pred CCCCcccccHHHHHHHHHHHHHhcC-----CCCceEEEEEecchhhcccccHHHHhcCCcchhhhh--------------
Confidence 3348899999999999988888653 145567889999999999999877766553311111
Q ss_pred HHHhhccceEEEecCCCCCC
Q 009941 380 ECTIRQSFLVSADMAHGVHP 399 (522)
Q Consensus 380 ~~~l~~S~~IS~DvahA~hP 399 (522)
..+|-.|+-...+|
T Consensus 283 ------~~viN~Dm~g~~~~ 296 (435)
T COG2234 283 ------ALVINLDMLGSPNP 296 (435)
T ss_pred ------heEEecccccCCCC
Confidence 24788888877654
No 102
>PRK07205 hypothetical protein; Provisional
Probab=73.36 E-value=4.3 Score=43.96 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=34.0
Q ss_pred eeecc-CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccc
Q 009941 299 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (522)
Q Consensus 299 ~I~s~-~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~g 349 (522)
.|.|+ ..|+..++.++|.|+..+.+. .. ..+....+++...||+|+.|
T Consensus 108 ~lyGRGa~DmKgglaa~l~Al~~l~~~--~~-~~~~~i~l~~~~dEE~g~~g 156 (444)
T PRK07205 108 CLFGRGTQDDKGPSMAALYAVKALLDA--GV-QFNKRIRFIFGTDEETLWRC 156 (444)
T ss_pred EEEECCcccCcHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEECCcccCccc
Confidence 34444 489999999999998877432 11 12345778899999998765
No 103
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=73.19 E-value=9.1 Score=40.33 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhccCCC-----hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCc
Q 009941 57 SSSIVGDLLDYLNESWT-----PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGF 131 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T-----~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~ 131 (522)
+.++.++|+.+=..||+ +.-+++++.++|++.||.... .+...+++.......|++|...|... ...
T Consensus 7 ~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~-----~~~~~~~~~~~~~~~nl~~~~~g~~~---~~~ 78 (400)
T PRK13983 7 MIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVE-----RYDAPDPRVIEGVRPNIVAKIPGGDG---KRT 78 (400)
T ss_pred HHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEE-----EEecCCcccccCCCccEEEEecCCCC---CCe
Confidence 34455566655555543 577889999999999996211 01111111111102378887545321 126
Q ss_pred eEEEEeccCCC
Q 009941 132 HIIAAHTDSPC 142 (522)
Q Consensus 132 ~ii~AH~Dspg 142 (522)
+++.+|+|...
T Consensus 79 lll~~H~Dtvp 89 (400)
T PRK13983 79 LWIISHMDVVP 89 (400)
T ss_pred EEEEeeccccC
Confidence 99999999873
No 104
>PRK13004 peptidase; Reviewed
Probab=73.18 E-value=11 Score=40.11 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~A 136 (522)
+.++.++|+++=.-|..++.+.+++.+.|++.||+.. +++..+ |++|.. ++. ...+++.+
T Consensus 17 ~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~--------------~~~~~~-n~~a~~-~~~----~~~i~~~~ 76 (399)
T PRK13004 17 MTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKV--------------EIDPMG-NVLGYI-GHG----KKLIAFDA 76 (399)
T ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEE--------------EEcCCC-eEEEEE-CCC----CcEEEEEe
Confidence 4445566666666667789999999999999999621 112234 788765 332 13599999
Q ss_pred eccCCC
Q 009941 137 HTDSPC 142 (522)
Q Consensus 137 H~Dspg 142 (522)
|+|-+-
T Consensus 77 H~DtVp 82 (399)
T PRK13004 77 HIDTVG 82 (399)
T ss_pred ccCccC
Confidence 999874
No 105
>PRK07318 dipeptidase PepV; Reviewed
Probab=72.92 E-value=3.8 Score=44.72 Aligned_cols=44 Identities=16% Similarity=-0.002 Sum_probs=31.5
Q ss_pred CCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccc
Q 009941 304 RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (522)
Q Consensus 304 ~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga 350 (522)
..|+..++.+++.|+..++.. .. .......++++..||+|+.|+
T Consensus 116 ~~DmKgg~aa~l~Al~~l~~~--g~-~~~~~i~l~~~~DEE~g~~G~ 159 (466)
T PRK07318 116 TSDDKGPTMAAYYALKIIKEL--GL-PLSKKVRFIVGTDEESGWKCM 159 (466)
T ss_pred cccCcHHHHHHHHHHHHHHHc--CC-CCCccEEEEEEcccccCchhH
Confidence 379999999999888776532 11 113346778899999998654
No 106
>PRK08262 hypothetical protein; Provisional
Probab=71.13 E-value=5.4 Score=43.73 Aligned_cols=46 Identities=24% Similarity=0.140 Sum_probs=33.0
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
+..|+..++.++|.|+..+++.... .....+++|...||+|+.|+.
T Consensus 151 G~~D~Kg~~aa~L~A~~~l~~~~~~---l~~~I~llf~~dEE~g~~G~~ 196 (486)
T PRK08262 151 GALDDKGSLVAILEAAEALLAQGFQ---PRRTIYLAFGHDEEVGGLGAR 196 (486)
T ss_pred CccccchhHHHHHHHHHHHHHcCCC---CCCeEEEEEecccccCCcCHH
Confidence 3479999999999998776432101 234577889999999987543
No 107
>PRK08652 acetylornithine deacetylase; Provisional
Probab=70.07 E-value=5.2 Score=41.28 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCc
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFE 91 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~ 91 (522)
..++.++|+++=.-|+.++-+++++.+.|++.||.
T Consensus 4 ~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~ 38 (347)
T PRK08652 4 AKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYD 38 (347)
T ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCE
Confidence 44577788888788888999999999999999996
No 108
>PRK07906 hypothetical protein; Provisional
Probab=68.70 E-value=20 Score=38.51 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=45.3
Q ss_pred HHHHHHHHhhccC------CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCce
Q 009941 59 SIVGDLLDYLNES------WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFH 132 (522)
Q Consensus 59 ~~a~~~~~fl~~s------~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ 132 (522)
++.++|+.+=..+ +-+..+.++++++|++.||.. +.++..+ .. .|++|...|+.+ +...+
T Consensus 3 ~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~----~~~~~~~-------~~-~nv~~~~~g~~~--~~~~l 68 (426)
T PRK07906 3 DLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEP----TYLESAP-------GR-ANVVARLPGADP--SRPAL 68 (426)
T ss_pred HHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCe----EEeecCC-------Cc-eEEEEEEeCCCC--CCCcE
Confidence 3556777666656 235568889999999999962 1111111 12 389987656431 12359
Q ss_pred EEEEeccCCCc
Q 009941 133 IIAAHTDSPCL 143 (522)
Q Consensus 133 ii~AH~Dspg~ 143 (522)
++.+|+|-+--
T Consensus 69 ll~~H~DtVp~ 79 (426)
T PRK07906 69 LVHGHLDVVPA 79 (426)
T ss_pred EEEcccccCCC
Confidence 99999998743
No 109
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=68.56 E-value=7 Score=41.89 Aligned_cols=43 Identities=21% Similarity=0.082 Sum_probs=30.8
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccc
Q 009941 305 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (522)
Q Consensus 305 LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga 350 (522)
.|+..++.++|.|+..+... .. ......+++|+..||+|+.|+
T Consensus 135 ~D~kgg~a~~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~G~ 177 (410)
T PRK06133 135 ADDKGGVAVILHALKILQQL--GF-KDYGTLTVLFNPDEETGSPGS 177 (410)
T ss_pred ccchHHHHHHHHHHHHHHHc--CC-CCCCCEEEEEECCcccCCccH
Confidence 79999999999888776432 11 123457788999999987644
No 110
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=68.41 E-value=14 Score=39.47 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCCC
Q 009941 74 PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSPC 142 (522)
Q Consensus 74 ~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dspg 142 (522)
+.-+.+++.+.|++.||. .. . +..+ ||+|...|... ....+++.+|+|.+.
T Consensus 36 e~~~a~~l~~~l~~~g~~-~~---~-----------~~~~-nl~a~~~g~~~--~~~~l~l~gH~DtVp 86 (413)
T PRK09290 36 DLQARDLFAEWMEAAGLT-VR---V-----------DAVG-NLFGRLEGRDP--DAPAVLTGSHLDTVP 86 (413)
T ss_pred HHHHHHHHHHHHHHcCCE-EE---E-----------cCCC-cEEEEecCCCC--CCCEEEEecCccCCC
Confidence 677889999999999996 21 1 1123 89887644321 123599999999974
No 111
>PRK07522 acetylornithine deacetylase; Provisional
Probab=67.92 E-value=6.6 Score=41.28 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhccCCCh-HHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEE
Q 009941 57 SSSIVGDLLDYLNESWTP-FHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIA 135 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~-~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~ 135 (522)
+.++.++|+++=..|+-+ ..+.++++++|++.||+. . .|...++ .+.|++|.. |+.. .+.+++-
T Consensus 6 ~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~-~---~~~~~~~-------~~~nv~a~~-~~~~---~~~ill~ 70 (385)
T PRK07522 6 SLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVES-E---LIPDPEG-------DKANLFATI-GPAD---RGGIVLS 70 (385)
T ss_pred HHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeE-E---EEecCCC-------CcccEEEEe-CCCC---CCeEEEE
Confidence 444566666665556555 599999999999999962 1 1111111 123788864 4321 2359999
Q ss_pred EeccCC
Q 009941 136 AHTDSP 141 (522)
Q Consensus 136 AH~Dsp 141 (522)
+|+|-+
T Consensus 71 ~H~Dtv 76 (385)
T PRK07522 71 GHTDVV 76 (385)
T ss_pred eecccc
Confidence 999944
No 112
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=67.02 E-value=19 Score=38.30 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~A 136 (522)
+.++.++|+++=.-|..++.+.+++.+.|++.||.... ++..+ +++|.. |.. .+.+++.+
T Consensus 15 ~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~--------------~~~~~-~v~~~~-g~~----~~~l~l~~ 74 (395)
T TIGR03526 15 MIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVE--------------IDPMG-NVLGYI-GHG----PKLIAMDA 74 (395)
T ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEE--------------EcCCC-cEEEEe-CCC----CCEEEEEe
Confidence 44455666666666777899999999999999996311 11124 687764 532 23589999
Q ss_pred eccCCC
Q 009941 137 HTDSPC 142 (522)
Q Consensus 137 H~Dspg 142 (522)
|+|-+.
T Consensus 75 H~DtVp 80 (395)
T TIGR03526 75 HIDTVG 80 (395)
T ss_pred eccccC
Confidence 999874
No 113
>PRK09133 hypothetical protein; Provisional
Probab=67.01 E-value=6.9 Score=42.71 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhccCCC--hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEE
Q 009941 57 SSSIVGDLLDYLNESWT--PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHII 134 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T--~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii 134 (522)
+.++.++|+.+=..+|. +..+++++.++|++.||.. +.|++.+. .... .||++...|+.. ...+++
T Consensus 39 ~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~----~~~~~~~~----~~~~-~nli~~~~g~~~---~~~lll 106 (472)
T PRK09133 39 ARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFAD----ADIEVTGP----YPRK-GNLVARLRGTDP---KKPILL 106 (472)
T ss_pred HHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCc----eEEEeccC----CCCc-eeEEEEecCCCC---CCcEEE
Confidence 34455566665555532 4578889999999999962 11111110 0122 388887655431 134999
Q ss_pred EEeccCC
Q 009941 135 AAHTDSP 141 (522)
Q Consensus 135 ~AH~Dsp 141 (522)
.+|+|-+
T Consensus 107 ~~H~DtV 113 (472)
T PRK09133 107 LAHMDVV 113 (472)
T ss_pred EeecccC
Confidence 9999965
No 114
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=65.74 E-value=24 Score=37.50 Aligned_cols=68 Identities=13% Similarity=0.009 Sum_probs=40.9
Q ss_pred HHHHHHHhhccCCC--hHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEe
Q 009941 60 IVGDLLDYLNESWT--PFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAH 137 (522)
Q Consensus 60 ~a~~~~~fl~~s~T--~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH 137 (522)
+-++|++.=..+|. +..+++++++.|++.||.. +.++..+ .+.++++...|++. +...+++.+|
T Consensus 14 ~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~----~~~~~~~--------g~~~l~~~~~g~~~--~~~~i~l~~H 79 (400)
T TIGR01880 14 RFREYLRINTVQPNPDYAACVDFLIKQADELGLAR----KTIEFVP--------GKPVVVLTWPGSNP--ELPSILLNSH 79 (400)
T ss_pred HHHHHhccCccCCCccHHHHHHHHHHHHHhCCCce----eEEEecC--------CceeEEEEEecCCC--CCCeEEEEcc
Confidence 44455544444443 3688999999999999852 1111111 12367776556431 1235999999
Q ss_pred ccCC
Q 009941 138 TDSP 141 (522)
Q Consensus 138 ~Dsp 141 (522)
||-+
T Consensus 80 ~DvV 83 (400)
T TIGR01880 80 TDVV 83 (400)
T ss_pred cccC
Confidence 9987
No 115
>PRK09104 hypothetical protein; Validated
Probab=65.14 E-value=7.3 Score=42.43 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=31.2
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~g 349 (522)
+..|++.++.+.+.|+..+.+....+ .....+++...||+|+.|
T Consensus 125 G~~D~Kg~laa~l~a~~~l~~~~~~~---~~~i~~~~~~dEE~g~~g 168 (464)
T PRK09104 125 GASDDKGQLMTFVEACRAWKAVTGSL---PVRVTILFEGEEESGSPS 168 (464)
T ss_pred cccCCcHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECccccCCcc
Confidence 34899999999999887764321111 234677889999998864
No 116
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=61.64 E-value=24 Score=37.44 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAA 136 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~A 136 (522)
..++.++|+++=.-+..+..+.+++.+.|++.||+... ++..+ |++|.. |.. ...+++.+
T Consensus 15 ~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~--------------~~~~~-n~~~~~-g~~----~~~l~l~~ 74 (395)
T TIGR03320 15 MIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVE--------------IDPMG-NVLGYI-GHG----PKLIAMDA 74 (395)
T ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEE--------------ECCCC-CEEEEe-CCC----CcEEEEEe
Confidence 33455556655566667789999999999999996211 11124 688764 532 12488999
Q ss_pred eccCC
Q 009941 137 HTDSP 141 (522)
Q Consensus 137 H~Dsp 141 (522)
|+|.+
T Consensus 75 H~DtV 79 (395)
T TIGR03320 75 HIDTV 79 (395)
T ss_pred ccccc
Confidence 99986
No 117
>PRK06446 hypothetical protein; Provisional
Probab=61.52 E-value=9.9 Score=41.10 Aligned_cols=44 Identities=20% Similarity=0.122 Sum_probs=32.0
Q ss_pred ccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccc
Q 009941 302 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (522)
Q Consensus 302 s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~g 349 (522)
=++.|++.++.++|.|+..+... .. ......++++..||+|+.|
T Consensus 99 RGa~DmKgglaa~l~A~~~l~~~-~~---~~~~i~~~~~~dEE~g~~g 142 (436)
T PRK06446 99 RGASDNKGTLMARLFAIKHLIDK-HK---LNVNVKFLYEGEEEIGSPN 142 (436)
T ss_pred EeccCCcHHHHHHHHHHHHHHHc-CC---CCCCEEEEEEcccccCCHh
Confidence 35589999999999998776421 01 2334677889999999765
No 118
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=60.91 E-value=23 Score=36.69 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHC-CCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEE
Q 009941 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDA-GFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIA 135 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~T~~hav~~~~~~L~~~-GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~ 135 (522)
+.++.++++++=.-|..+..+++++++.|++. ||+. . +.+.+++|.. +... .+.+++-
T Consensus 9 ~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~-~----------------~~~~~~~~~~-~~~~---~~~i~l~ 67 (352)
T PRK13007 9 LAELTAALVDIPSVSGDEKALADAVEAALRALPHLEV-I----------------RHGNSVVART-DLGR---PSRVVLA 67 (352)
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceE-E----------------ecCCeEEEEc-cCCC---CCeEEEE
Confidence 45567777777777888899999999999995 7641 1 1133788865 3221 1249999
Q ss_pred EeccCCCc
Q 009941 136 AHTDSPCL 143 (522)
Q Consensus 136 AH~Dspg~ 143 (522)
+|+|.+-.
T Consensus 68 ~H~Dtvp~ 75 (352)
T PRK13007 68 GHLDTVPV 75 (352)
T ss_pred ccccccCC
Confidence 99998753
No 119
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=60.66 E-value=10 Score=40.63 Aligned_cols=48 Identities=15% Similarity=-0.018 Sum_probs=33.5
Q ss_pred eeec-cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccc
Q 009941 299 FIFS-GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (522)
Q Consensus 299 ~I~s-~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~g 349 (522)
.|.| +..|++.++.++|.|+..+... .. ......++++...||+|+.+
T Consensus 115 ~iyGrGa~D~Kg~~aa~l~a~~~l~~~--~~-~~~~~v~~~~~~dEE~g~~~ 163 (427)
T PRK13013 115 RIYGRGACDMKGGLAASIIAAEAFLAV--YP-DFAGSIEISGTADEESGGFG 163 (427)
T ss_pred EEEeccccccchHHHHHHHHHHHHHHh--CC-CCCccEEEEEEeccccCChh
Confidence 3444 3689999999999888877532 11 12345777899999998763
No 120
>PRK06156 hypothetical protein; Provisional
Probab=60.37 E-value=10 Score=42.15 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=30.7
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 305 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 305 LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
-|+..++.+++.|+..+... .. .......++|+..||+|+.|+.
T Consensus 153 ~D~Kgg~a~~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~G~~ 196 (520)
T PRK06156 153 EDDKGAIVTALYAMKAIKDS--GL-PLARRIELLVYTTEETDGDPLK 196 (520)
T ss_pred ccchHHHHHHHHHHHHHHHc--CC-CCCceEEEEEecccccCchhHH
Confidence 69999999998887665422 11 1234567788999999987644
No 121
>PRK08201 hypothetical protein; Provisional
Probab=59.78 E-value=10 Score=41.17 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=30.1
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 349 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~g 349 (522)
+.-|++.++.+.+.|+..+...... ......++++..||+|+.|
T Consensus 117 G~~DmKgglaa~l~a~~~l~~~~~~---~~~~i~~~~~~dEE~g~~g 160 (456)
T PRK08201 117 GASDDKGQVFMHLKAVEALLKVEGT---LPVNVKFCIEGEEEIGSPN 160 (456)
T ss_pred ecccCcHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEcccccCCcc
Confidence 3469999999998888766421001 1334677888999998754
No 122
>PLN02280 IAA-amino acid hydrolase
Probab=57.92 E-value=25 Score=38.86 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhccCC----ChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCce
Q 009941 57 SSSIVGDLLDYLNESW----TPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFH 132 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s~----T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ 132 (522)
..++.++++.++...| -++.+.+++++.|++.||+.- . . . .+.+++|.. |+.. ...+
T Consensus 95 ~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~-~----~--~--------~~~~vva~~-g~~~---~~~I 155 (478)
T PLN02280 95 TVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYR-Y----P--L--------AKTGIRAWI-GTGG---PPFV 155 (478)
T ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEE-e----c--C--------CCCEEEEEE-CCCC---CCEE
Confidence 4456778999999998 569999999999999999731 1 0 0 133788875 6431 1359
Q ss_pred EEEEeccCCCc
Q 009941 133 IIAAHTDSPCL 143 (522)
Q Consensus 133 ii~AH~Dspg~ 143 (522)
++-+|||-.-.
T Consensus 156 ~l~gh~DaVP~ 166 (478)
T PLN02280 156 AVRADMDALPI 166 (478)
T ss_pred EEEEecCCCcc
Confidence 99999998753
No 123
>PRK05111 acetylornithine deacetylase; Provisional
Probab=57.89 E-value=13 Score=39.19 Aligned_cols=44 Identities=20% Similarity=0.081 Sum_probs=32.3
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
+..|+..++.++|.|+..+... .+ .....++++..||+|+.|+.
T Consensus 108 G~~D~Kg~~a~~l~a~~~l~~~--~~---~~~i~~~~~~~EE~g~~G~~ 151 (383)
T PRK05111 108 GTADMKGFFAFILEALRDIDLT--KL---KKPLYILATADEETSMAGAR 151 (383)
T ss_pred ccccccHHHHHHHHHHHHHhhc--CC---CCCeEEEEEeccccCcccHH
Confidence 3489999999999988876432 12 23467789999999987654
No 124
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=57.87 E-value=29 Score=36.23 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=45.9
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEec
Q 009941 59 SIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHT 138 (522)
Q Consensus 59 ~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~ 138 (522)
++.++|+..=..|+.+..+.++++++|++.||+. . .+.+ +..+ |+++.. |+. ...+++.+|+
T Consensus 3 ~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~-~---~~~~--------~~~~-~~~~~~-g~~----~~~i~~~~H~ 64 (370)
T TIGR01246 3 ELAKELISRPSVTPNDAGCQDIIAERLEKLGFEI-E---WMHF--------GDTK-NLWATR-GTG----EPVLAFAGHT 64 (370)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEE-E---EEec--------CCCc-eEEEEe-cCC----CcEEEEEccc
Confidence 4667888888888888999999999999999962 1 1111 1123 787763 432 2249999999
Q ss_pred cCC
Q 009941 139 DSP 141 (522)
Q Consensus 139 Dsp 141 (522)
|-+
T Consensus 65 DtV 67 (370)
T TIGR01246 65 DVV 67 (370)
T ss_pred ccc
Confidence 986
No 125
>PLN02693 IAA-amino acid hydrolase
Probab=55.98 E-value=42 Score=36.51 Aligned_cols=78 Identities=13% Similarity=-0.056 Sum_probs=53.0
Q ss_pred cCHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEE--Eeccc-----cccccchhhhcCHHHHHHH
Q 009941 429 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTV--DCGIA-----QLSMHSVREICGTEDIDIA 500 (522)
Q Consensus 429 t~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~ti--diGiP-----~l~MHS~~E~~~~~Dv~~~ 500 (522)
.|..+.+.+++.+++ .|.+..... ...+|+++..+.+. .+|++ -+|+- .-..||+.+.++-+-+...
T Consensus 335 nd~~l~~~~~~~~~~~~G~~~~~~~---~~~~gseDf~~~~~--~vP~~~~~lG~~~~~~~~~~~H~~~f~~de~~l~~~ 409 (437)
T PLN02693 335 NNMDLYKQFKKVVRDLLGQEAFVEA---APEMGSEDFSYFAE--TIPGHFSLLGMQDETNGYASSHSPLYRINEDVLPYG 409 (437)
T ss_pred CCHHHHHHHHHHHHHhcCCcceeec---CCCceechHHHHHH--HhhhhEEEEecCCCCCCCCCCCCCCcCCCHHHHHHH
Confidence 467788899999988 476532211 12356776666654 67876 55542 2378999999999999888
Q ss_pred HHHHHHHHhhc
Q 009941 501 YRHFKAFYESF 511 (522)
Q Consensus 501 ~~l~~af~~~~ 511 (522)
++++..+..++
T Consensus 410 ~~~~~~~~~~~ 420 (437)
T PLN02693 410 AAIHATMAVQY 420 (437)
T ss_pred HHHHHHHHHHH
Confidence 88886665543
No 126
>PRK05469 peptidase T; Provisional
Probab=53.68 E-value=20 Score=38.25 Aligned_cols=39 Identities=28% Similarity=0.215 Sum_probs=29.0
Q ss_pred CCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccC
Q 009941 305 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG 346 (522)
Q Consensus 305 LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVG 346 (522)
.|+..++.+++.|+..+..... .......++|...||+|
T Consensus 139 ~D~Kgglaa~l~a~~~l~~~~~---~~~g~v~~~f~~dEE~g 177 (408)
T PRK05469 139 ADDKAGIAEIMTALEYLIAHPE---IKHGDIRVAFTPDEEIG 177 (408)
T ss_pred ccchHHHHHHHHHHHHHHhCCC---CCCCCEEEEEecccccC
Confidence 8999999999988877643200 12345788999999987
No 127
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=53.47 E-value=19 Score=39.38 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHH-CCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecc--c--cccccchhhhcCHHHHHHHHHHH
Q 009941 430 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGI--A--QLSMHSVREICGTEDIDIAYRHF 504 (522)
Q Consensus 430 ~~~~~a~l~~ia~~-~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGi--P--~l~MHS~~E~~~~~Dv~~~~~l~ 504 (522)
|..+...+.++.++ .|.+.+.... +|+|++.... +++.+|+ | ...+|++.|-++++|+..+.++|
T Consensus 374 ~~~lv~~l~~~~~~~~g~~~~~~~~-----~ggtda~~~~-----~~i~~Gp~~pG~~~~aH~~dE~v~i~~l~~~~~i~ 443 (447)
T TIGR01887 374 DDPLVQTLMKVYEKQTGDEGTPVAI-----GGGTYARLME-----NGVAFGALFPGEEDTMHQANEYIMIDDLLLATAIY 443 (447)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeeEe-----cchhhhhhCC-----CcEEeCCCCCCCCCCccCCCcceeHHHHHHHHHHH
Confidence 44566666666654 4555554332 4567765532 3577774 2 34489999999999999999998
Q ss_pred HHHH
Q 009941 505 KAFY 508 (522)
Q Consensus 505 ~af~ 508 (522)
..++
T Consensus 444 ~~~~ 447 (447)
T TIGR01887 444 AEAI 447 (447)
T ss_pred HHhC
Confidence 8753
No 128
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=53.36 E-value=18 Score=39.67 Aligned_cols=46 Identities=20% Similarity=0.062 Sum_probs=32.0
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
...||..++.+.+.|+..++.. .. .......+++...||+|+.|..
T Consensus 114 G~~D~Kg~~~a~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~g~~ 159 (466)
T TIGR01886 114 GASDDKGPSLAAYYAMKILKEL--GL-PPSKKIRFVVGTNEETGWVDMD 159 (466)
T ss_pred CccccchHHHHHHHHHHHHHHh--CC-CCCCCEEEEEECccccCcccHH
Confidence 4479999999988888776432 11 1233467788899999987553
No 129
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=53.27 E-value=26 Score=37.10 Aligned_cols=63 Identities=19% Similarity=0.083 Sum_probs=41.0
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEeccCC
Q 009941 62 GDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHTDSP 141 (522)
Q Consensus 62 ~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~Dsp 141 (522)
++|+.+=..|+.+..+.+++.+.|++.||..+. +. +.+.||+|.. +... ...+++.+|+|-+
T Consensus 3 ~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~------~~--------~~~~nvva~~-~~~~---~~~l~l~gH~DtV 64 (373)
T TIGR01900 3 QQIMDIFSPSDHEGPIADEIEAALNNLELEGLE------VF--------RFGDNVLART-DFGK---ASRVILAGHIDTV 64 (373)
T ss_pred HHHhCCCCCCchHHHHHHHHHHHHhhccccCce------EE--------EECCEEEEec-CCCC---CCeEEEeCccccc
Confidence 466666666677888888999999998864321 11 1123788864 3221 1249999999987
Q ss_pred C
Q 009941 142 C 142 (522)
Q Consensus 142 g 142 (522)
-
T Consensus 65 p 65 (373)
T TIGR01900 65 P 65 (373)
T ss_pred c
Confidence 4
No 130
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=52.76 E-value=91 Score=29.04 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCccccccccccccCCCeEEEeecC
Q 009941 77 ATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM 113 (522)
Q Consensus 77 av~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g 113 (522)
..+.+.+.|+++||+++.+.+.|++++||=+...+.|
T Consensus 52 nT~tl~~~L~~~G~~~I~~~~~~~~q~GDI~I~g~~g 88 (145)
T PF05382_consen 52 NTETLHDWLKKNGFKKISENVDWNLQRGDIFIWGRRG 88 (145)
T ss_pred CHHHHHHHHhhCCcEEeccCCcccccCCCEEEEcCCC
Confidence 6788889999999999998888999998866654443
No 131
>PRK08554 peptidase; Reviewed
Probab=50.76 E-value=21 Score=38.80 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=30.6
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD 348 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ 348 (522)
+..|+..++.+++.|+..+.+. . ......++++..||+|+.
T Consensus 100 G~~DmKgg~aa~l~A~~~l~~~--~---~~~~i~l~~~~dEE~g~~ 140 (438)
T PRK08554 100 GSADDKGNVASVMLALKELSKE--P---LNGKVIFAFTGDEEIGGA 140 (438)
T ss_pred CcccchHHHHHHHHHHHHHHhc--C---CCCCEEEEEEcccccCcc
Confidence 4589999999999888876432 1 233467788999999864
No 132
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=50.33 E-value=18 Score=39.54 Aligned_cols=46 Identities=20% Similarity=0.111 Sum_probs=31.9
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCccccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 351 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~ 351 (522)
+..|+..++.+++.|+..+... .. .......++++..||+|+.|..
T Consensus 103 Ga~D~KG~laa~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~g~~ 148 (447)
T TIGR01887 103 GTLDDKGPTIAALYAMKILKEL--GL-KLKKKIRFIFGTDEETGWACID 148 (447)
T ss_pred CcccCcHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEECCcccCcHhHH
Confidence 4469999999999888776432 11 1233467788899999987643
No 133
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=48.41 E-value=47 Score=35.34 Aligned_cols=72 Identities=22% Similarity=0.183 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhccC-CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEE
Q 009941 57 SSSIVGDLLDYLNES-WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIA 135 (522)
Q Consensus 57 ~~~~a~~~~~fl~~s-~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~ 135 (522)
+.+..++++.|-..| ....-+.+++++.|++.||.-.. +...+.. +..|+++...+... ...+++.
T Consensus 15 ~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~----~~~~~~~------~~~n~~~~~~~~~~---~~~l~l~ 81 (409)
T COG0624 15 ILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEE----DEVGPGP------GRPNLVARLGGGDG---GPTLLLG 81 (409)
T ss_pred HHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEE----eecCCCC------CceEEEEEecCCCC---CCeEEEe
Confidence 445778888888888 78999999999999999986211 1111111 12278877655431 1469999
Q ss_pred EeccCC
Q 009941 136 AHTDSP 141 (522)
Q Consensus 136 AH~Dsp 141 (522)
+|+|.+
T Consensus 82 ~H~DvV 87 (409)
T COG0624 82 GHLDVV 87 (409)
T ss_pred cccccc
Confidence 999965
No 134
>PRK07907 hypothetical protein; Provisional
Probab=48.27 E-value=27 Score=37.85 Aligned_cols=42 Identities=26% Similarity=0.135 Sum_probs=30.5
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga 350 (522)
+..|+..++.+++.|+..+ .. . ......++++..||.|+.|.
T Consensus 121 G~~D~Kg~~aa~l~a~~~l-~~--~---~~~~i~~~~~~dEE~g~~g~ 162 (449)
T PRK07907 121 GAADDKGGIAMHLAALRAL-GG--D---LPVGVTVFVEGEEEMGSPSL 162 (449)
T ss_pred CccCCcHHHHHHHHHHHHh-cc--C---CCCcEEEEEEcCcccCCccH
Confidence 5589999999999999876 21 1 12345667888899998543
No 135
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=48.20 E-value=29 Score=36.73 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=33.4
Q ss_pred CCeeeccCC-CchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCc
Q 009941 297 NEFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 347 (522)
Q Consensus 297 ~e~I~s~~L-Dnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs 347 (522)
++.|.|++- |+..++.++|.|+..+...... ........++++..||+|+
T Consensus 93 ~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~-~~~~~~i~~~~~~dEE~~~ 143 (373)
T TIGR01900 93 DGILWGCGATDMKAGDAVMLHLAATLDGRAPE-TELKHDLTLIAYDCEEVAA 143 (373)
T ss_pred CCEEEecCchhhhHHHHHHHHHHHHHhhhccc-cCCCCCEEEEEEecccccC
Confidence 446666666 9999999999888776311000 0123356778999999974
No 136
>PRK07079 hypothetical protein; Provisional
Probab=46.80 E-value=23 Score=38.67 Aligned_cols=47 Identities=21% Similarity=0.101 Sum_probs=31.5
Q ss_pred ccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccc
Q 009941 302 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 350 (522)
Q Consensus 302 s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga 350 (522)
=+..|+..++.+.|.|+..+.... .. ......+++++..||+|+.|.
T Consensus 123 RGa~DmKgg~aa~l~A~~~l~~~~-~~-~~~~~i~~~~~~dEE~g~~G~ 169 (469)
T PRK07079 123 RGTADNKGQHTINLAALEQVLAAR-GG-RLGFNVKLLIEMGEEIGSPGL 169 (469)
T ss_pred EeccCCcHHHHHHHHHHHHHHHhc-CC-CCCCCEEEEEECccccCCccH
Confidence 356899999998888877653210 00 123457788999999987543
No 137
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=43.60 E-value=19 Score=29.65 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=19.8
Q ss_pred hHHHHHHHHHcCCCCCceeEEEeE
Q 009941 260 PQLMQILSQELGCGTDDIASIELN 283 (522)
Q Consensus 260 ~~ll~~la~~~gV~~gDiv~~dl~ 283 (522)
..-|+-+++.+.|+|||++.|+..
T Consensus 45 ~~tL~~iC~~LeCqpgDiley~~d 68 (73)
T COG3655 45 LSTLEKICKALECQPGDILEYVPD 68 (73)
T ss_pred HHHHHHHHHHcCCChhheeEEecC
Confidence 456677899999999999998643
No 138
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=43.59 E-value=68 Score=29.15 Aligned_cols=81 Identities=17% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhccC---------CChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCC
Q 009941 58 SSIVGDLLDYLNES---------WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVG 128 (522)
Q Consensus 58 ~~~a~~~~~fl~~s---------~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~ 128 (522)
..+-+++..-++.| ||.-.|++..+..+++.|+..+...+. ..+-+-+|+.-|.++--.+.-... +
T Consensus 22 ~~Lr~~L~~~~~~sd~~~lGIcA~s~~~ai~ALr~~~~alg~~~~~~~~~--~~~~GpVfLK~N~~tg~~yv~~y~---G 96 (125)
T PF08854_consen 22 KKLRQALRLLASNSDWFTLGICAPSAEEAIAALRSYEQALGYPPLEPLDS--PPIEGPVFLKANQKTGSCYVRSYT---G 96 (125)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEEESSHHHHHHHHHHHHHHTT--------------SSSEEEEEETTT--EEEEE-----S
T ss_pred HHHHHHHHHHHhccCceEEEeecCCHHHHHHHHHHHHHHcCCCccCCCCC--CCCCCCEEEEecCCCCcEEEeecC---C
Confidence 33556666666665 999999999999999999998654432 122356888877655444432221 2
Q ss_pred CCc-eEEEEeccCCCc
Q 009941 129 NGF-HIIAAHTDSPCL 143 (522)
Q Consensus 129 ~g~-~ii~AH~Dspg~ 143 (522)
.+. ++|..|.|+..+
T Consensus 97 ~~rGVLiScqs~~~~~ 112 (125)
T PF08854_consen 97 LGRGVLISCQSDDDEG 112 (125)
T ss_dssp --BEEEEEEE-SSTTS
T ss_pred ccceEEEEeccCCccc
Confidence 233 999999988653
No 139
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=42.01 E-value=45 Score=28.93 Aligned_cols=51 Identities=20% Similarity=0.041 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEecccccccc
Q 009941 428 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMH 486 (522)
Q Consensus 428 ~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MH 486 (522)
+|...+...+++.|+++|++++.... +.+.+-....+..++-+|..++|+-
T Consensus 11 aSSs~la~km~~~a~~~gi~~~i~a~--------~~~e~~~~~~~~Dvill~PQv~~~~ 61 (99)
T cd05565 11 GTSGLLANALNKGAKERGVPLEAAAG--------AYGSHYDMIPDYDLVILAPQMASYY 61 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEe--------eHHHHHHhccCCCEEEEcChHHHHH
Confidence 78889999999999999999997652 1222323335678888888888864
No 140
>PRK08737 acetylornithine deacetylase; Provisional
Probab=35.02 E-value=45 Score=35.22 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=26.2
Q ss_pred cCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCc
Q 009941 303 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 347 (522)
Q Consensus 303 ~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs 347 (522)
+..|.+.++.+++.|+... .....++++..||+|+
T Consensus 99 Ga~DmKg~~aa~l~a~~~~----------~~~v~~~~~~dEE~g~ 133 (364)
T PRK08737 99 GVCDIKGAAAALLAAANAG----------DGDAAFLFSSDEEAND 133 (364)
T ss_pred CcccchHHHHHHHHHHHcc----------CCCEEEEEEcccccCc
Confidence 4567778888888887642 1236889999999987
No 141
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=33.33 E-value=43 Score=28.66 Aligned_cols=23 Identities=39% Similarity=0.277 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEE
Q 009941 430 SGVTAFLFKEIAKLHNLPTQEFV 452 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~gIp~Q~~~ 452 (522)
.+..++.+.+.|+++|||+|.-.
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp 52 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDP 52 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCH
Confidence 56678999999999999999853
No 142
>PLN02693 IAA-amino acid hydrolase
Probab=32.30 E-value=1e+02 Score=33.59 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=43.5
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCCcccCCCCceEEEEec
Q 009941 59 SIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVGNGFHIIAAHT 138 (522)
Q Consensus 59 ~~a~~~~~fl~~s~T~~hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~~~~~~~g~~ii~AH~ 138 (522)
++.++|.+.=.-|--++.+.+++++.|++.||+.. . .. .+.+++|.. |++. ...+++-+||
T Consensus 51 ~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~-~------~~--------~~~~via~~-g~~~---g~~i~l~~h~ 111 (437)
T PLN02693 51 RIRRKIHENPELGYEEFETSKLIRSELDLIGIKYR-Y------PV--------AITGIIGYI-GTGE---PPFVALRADM 111 (437)
T ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeE-e------cC--------CCcEEEEEE-CCCC---CCEEEEEeec
Confidence 34444444445555789999999999999999721 0 00 124788864 5321 1259999999
Q ss_pred cCCC
Q 009941 139 DSPC 142 (522)
Q Consensus 139 Dspg 142 (522)
|..-
T Consensus 112 DaVp 115 (437)
T PLN02693 112 DALP 115 (437)
T ss_pred CCCc
Confidence 9884
No 143
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=31.76 E-value=63 Score=27.07 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEE
Q 009941 79 AEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAF 119 (522)
Q Consensus 79 ~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf 119 (522)
..+++.|+++||+-.+-...+++++.+-+-++-.++|+.++
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~ 51 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGI 51 (80)
T ss_pred hHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccc
Confidence 46889999999997776655557777777777666676554
No 144
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=31.57 E-value=4.3e+02 Score=26.77 Aligned_cols=82 Identities=15% Similarity=-0.045 Sum_probs=53.1
Q ss_pred EEEcCCCCcccCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhc--CCCCcEEEeccccccccchhhhcCHHH
Q 009941 419 IKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILAS--GVGIRTVDCGIAQLSMHSVREICGTED 496 (522)
Q Consensus 419 Ik~~~~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s--~~Gi~tidiGiP~l~MHS~~E~~~~~D 496 (522)
+++...+ |++++..|.+.++++||++.....+.-.--=||.-|+... ...+|+|.+++++. + .+...
T Consensus 79 ~~y~~~g----~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~------~~~~~ 147 (268)
T cd07371 79 LDYSINV----DVELAEACVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-Y------LSGEE 147 (268)
T ss_pred eeecCCC----CHHHHHHHHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-C------CCHHH
Confidence 6665444 9999999999999999998752111100113565566443 36788999987765 2 34556
Q ss_pred HHHHHHHHHHHHhhc
Q 009941 497 IDIAYRHFKAFYESF 511 (522)
Q Consensus 497 v~~~~~l~~af~~~~ 511 (522)
.+.+-+++.+.+++.
T Consensus 148 ~~~lG~al~~~l~~~ 162 (268)
T cd07371 148 TEGEMDLAGKATRDA 162 (268)
T ss_pred HHHHHHHHHHHHHHc
Confidence 666667776666543
No 145
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=31.09 E-value=6.1e+02 Score=26.21 Aligned_cols=82 Identities=12% Similarity=-0.049 Sum_probs=52.7
Q ss_pred ccCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhc--CCCCcEEEeccccccc-cchhhhcCHHHHHHHHHHH
Q 009941 428 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILAS--GVGIRTVDCGIAQLSM-HSVREICGTEDIDIAYRHF 504 (522)
Q Consensus 428 ~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s--~~Gi~tidiGiP~l~M-HS~~E~~~~~Dv~~~~~l~ 504 (522)
-.|+.++..|.+.++++||++.......-.--=||.-|+... ...+|+|.|+++.+.- +... -...+.+.+-+++
T Consensus 95 ~gd~eLA~~i~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~--~~~~~~~~lG~ai 172 (294)
T cd07372 95 NVDVELAEACCEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTK--EGLGEMDVLGKAT 172 (294)
T ss_pred CCCHHHHHHHHHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCccccccccc--CCHHHHHHHHHHH
Confidence 469999999999999999999852211100113566666443 2569999999865531 1111 3356667777777
Q ss_pred HHHHhhc
Q 009941 505 KAFYESF 511 (522)
Q Consensus 505 ~af~~~~ 511 (522)
...+++.
T Consensus 173 ~~al~~~ 179 (294)
T cd07372 173 REAIRKT 179 (294)
T ss_pred HHHHHhc
Confidence 7777654
No 146
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=30.21 E-value=84 Score=31.87 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHCCCCeeEEEeccCCCC-CCChHHHHhc-CCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHH
Q 009941 437 FKEIAKLHNLPTQEFVVRNDMGC-GSTIGPILAS-GVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKA 506 (522)
Q Consensus 437 l~~ia~~~gIp~Q~~~~r~D~~g-GsTig~i~~s-~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~a 506 (522)
=+++.++.+|.+ .+.|+ +++ ||+..++.++ .+|||++.|.-|.+.-+ ..-..|++.+++.++.
T Consensus 189 n~al~~~~~i~~--lVtK~-SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~----~~~~~~~~el~~~l~~ 253 (256)
T TIGR00715 189 EKALLREYRIDA--VVTKA-SGEQGGELEKVKAAEALGINVIRIARPQTIPG----VAIFDDISQLNQFVAR 253 (256)
T ss_pred HHHHHHHcCCCE--EEEcC-CCCccchHHHHHHHHHcCCcEEEEeCCCCCCC----CccCCCHHHHHHHHHH
Confidence 366788888754 34565 444 6788888665 58999999999986322 1223466666665554
No 147
>PRK10602 murein peptide amidase A; Provisional
Probab=30.15 E-value=3.3e+02 Score=27.35 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhcCCCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHh
Q 009941 430 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 509 (522)
Q Consensus 430 ~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~ 509 (522)
++...++.+.+|+..+.|+=... ..+.+|+.+.... ..|||++.+=.|. +.+..+++...+-+..+++
T Consensus 165 ~~~~~~~~~~la~af~~~~~~~~---~y~~~Gs~~~~a~-~~giP~it~El~~--------~~~~~~v~~~~~~~~~~l~ 232 (237)
T PRK10602 165 DPRHSELGEWLAQAFELPLVTSV---GYETPGSFGSWCA-DLNLHCITAELPP--------ISADEASEKYLFAMANLLR 232 (237)
T ss_pred CccchHHHHHHHHHhCCCeEeec---CCCCCCcHHHHHH-HcCCcEEEEecCC--------cCcHHHHHHHHHHHHHHHh
Confidence 34455677788889888854432 2233455554433 5899999998885 6777778888877777776
Q ss_pred hcc
Q 009941 510 SFS 512 (522)
Q Consensus 510 ~~~ 512 (522)
...
T Consensus 233 ~~~ 235 (237)
T PRK10602 233 WHP 235 (237)
T ss_pred ccc
Confidence 543
No 148
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=30.12 E-value=6e+02 Score=25.80 Aligned_cols=78 Identities=12% Similarity=-0.081 Sum_probs=49.4
Q ss_pred cccCHHHHHHHHHHHHHCCCCeeEEEeccCCCCCCChHHHHhc--CCCCcEEEeccccccccchhhhcCHHHHHHHHHHH
Q 009941 427 YATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILAS--GVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHF 504 (522)
Q Consensus 427 y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~gGsTig~i~~s--~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~ 504 (522)
+-.|+.+++.|.+.++++||++.......-.--=||.-|+... ...+|+|-|+++.- +. +....+.+-+.+
T Consensus 88 ~~g~~~LA~~i~~~l~~~Gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~-~~------~~~~~~~lG~ai 160 (272)
T cd07362 88 YPGDPELGRLLVEEGQEAGLRVKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWT-AA------SLEESYTWGEVI 160 (272)
T ss_pred CCCCHHHHHHHHHHHHHcCCceeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCC-CC------CHHHHHHHHHHH
Confidence 4459999999999999999998742110000112555555433 35699999998864 23 344555566666
Q ss_pred HHHHhhc
Q 009941 505 KAFYESF 511 (522)
Q Consensus 505 ~af~~~~ 511 (522)
.+.++.+
T Consensus 161 ~~al~~~ 167 (272)
T cd07362 161 GKALLES 167 (272)
T ss_pred HHHHHhh
Confidence 6666655
No 149
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=27.07 E-value=4.9e+02 Score=26.65 Aligned_cols=120 Identities=11% Similarity=-0.073 Sum_probs=72.0
Q ss_pred HHhhccceEEEecCCCCCCCC-CcccccCCCCcCCCccEEEEcC-------CCCcccCHHHHHHHHHHHHHCCCCeeEEE
Q 009941 381 CTIRQSFLVSADMAHGVHPNF-SEKHEEHHRPEMQKGLVIKHNA-------NQRYATSGVTAFLFKEIAKLHNLPTQEFV 452 (522)
Q Consensus 381 ~~l~~S~~IS~DvahA~hPn~-~~~~d~~~~~~Lg~GpvIk~~~-------~~~y~t~~~~~a~l~~ia~~~gIp~Q~~~ 452 (522)
+..+++.+|.++.-|+. +| .+.. -+-.+|.|..+...+ .-.+-.|+.++..|.+.+.+.|++.....
T Consensus 45 ~~~~PDviVvi~sdH~~--~f~~d~~---p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~~~~~~~ 119 (279)
T PRK13365 45 AEQKADVLVFFYNDHCT--TFFFDLY---PTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEFDLTVFQ 119 (279)
T ss_pred HHhCCCEEEEEcCchHH--HhccccC---CceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecc
Confidence 34678888888777764 23 1110 011233333331110 01356699999999999999999987542
Q ss_pred eccCCCCCCChHHHHhcC-----CCCcEEEeccccccccchhhhcCHHHHHHHHHHHHHHHhhc
Q 009941 453 VRNDMGCGSTIGPILASG-----VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESF 511 (522)
Q Consensus 453 ~r~D~~gGsTig~i~~s~-----~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~l~~af~~~~ 511 (522)
.+ .--=||.-|+.... ..+|+|-|++.+.. ++ +.+.+..+.+-+.+..+.+++
T Consensus 120 ~~--~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~-~p---~~~~~~~~~lG~al~~~i~~~ 177 (279)
T PRK13365 120 DK--PIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQ-YP---LPTARRCYRLGQALRRAIESY 177 (279)
T ss_pred CC--CCCchhhhHHHHhCCccccCCCCeEEEEEeccc-CC---CCCHHHHHHHHHHHHHHHHhc
Confidence 11 01124555553322 23889999987653 22 335677888888899998766
No 150
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=26.83 E-value=3.2e+02 Score=27.99 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=51.8
Q ss_pred cccCHHHHHHHHHHHHHCCCCeeEEEeccCCCC--CCChHHHHh--cCCCCcEEEeccccccccchhhhcCHHHHHHHHH
Q 009941 427 YATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGC--GSTIGPILA--SGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYR 502 (522)
Q Consensus 427 y~t~~~~~a~l~~ia~~~gIp~Q~~~~r~D~~g--GsTig~i~~--s~~Gi~tidiGiP~l~MHS~~E~~~~~Dv~~~~~ 502 (522)
+-.|+.++..|.+.++++||+....... ..+ =||.-|+.. -...+|+|-|++++. ++ +..+.+.+-+
T Consensus 92 ~~gd~eLA~~i~~~~~~~gi~~~~~~~~--~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~-~~------~~~~~~~lG~ 162 (282)
T TIGR02298 92 YPGNPALGQLIADEAQEHGVKTLAHQVP--SLGLEYGTLVPMRYMNEDGHFKVVSIAAWCT-VH------DIEESRALGE 162 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCceeeccCC--CCCCCeehHhHHHHhCCCCCCcEEEEeecCC-CC------CHHHHHHHHH
Confidence 3459999999999999999998732111 111 255555533 346799999999855 23 4556677888
Q ss_pred HHHHHHhhc
Q 009941 503 HFKAFYESF 511 (522)
Q Consensus 503 l~~af~~~~ 511 (522)
.+..+.++.
T Consensus 163 al~~~i~~~ 171 (282)
T TIGR02298 163 AIRKAIEQS 171 (282)
T ss_pred HHHHHHHhc
Confidence 888887653
No 151
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=24.65 E-value=66 Score=34.48 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=33.5
Q ss_pred ceEEEecCCCCCCCCCcc-cccCCCCcCCCccEEEEcCCCCcccCHHHHHHH-HHHHHHCCCC
Q 009941 387 FLVSADMAHGVHPNFSEK-HEEHHRPEMQKGLVIKHNANQRYATSGVTAFLF-KEIAKLHNLP 447 (522)
Q Consensus 387 ~~IS~DvahA~hPn~~~~-~d~~~~~~Lg~GpvIk~~~~~~y~t~~~~~a~l-~~ia~~~gIp 447 (522)
++|-+| |+.||.++.. |-..+-|.|..||.+|-.. .-.+.+.+-+ ..+|+-.|++
T Consensus 328 LiiTAD--HGnDPT~~gTdHTRE~iPvl~y~~~~k~~~----lg~r~tfADiGaTvA~~fgv~ 384 (397)
T COG1015 328 LIITAD--HGNDPTWGGTDHTREYIPVLVYGPGLKPGS----LGTRETFADIGATVADNFGVS 384 (397)
T ss_pred EEEecC--CCCCCCCCCCCccccccceEEEcCCccCCc----ccccccHHHHHHHHHHHhCCC
Confidence 456677 9999999874 3344568888888887542 1222222222 4566666654
No 152
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=23.56 E-value=91 Score=36.86 Aligned_cols=58 Identities=19% Similarity=-0.003 Sum_probs=41.2
Q ss_pred ccCCCchhhHHHHHHHHHHcCCCCCCCCCCCceEEEEEEcccccCcccccccCC--ccHHHHH
Q 009941 302 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGA--PTMFQAI 362 (522)
Q Consensus 302 s~~LDnr~~~~a~l~al~~~~~~~~~l~~~~~~~~~~~~dqEEVGs~ga~gA~s--~~l~dvl 362 (522)
.++=||-.||.++||+|+-....+..+ ++..++.|++.||-+..|+.|--. ++..++-
T Consensus 159 ~gAtDDg~~va~mLe~lRv~s~~~~~l---~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~k 218 (834)
T KOG2194|consen 159 PGATDDGSGVASMLEALRVLSKSDKLL---THSVVFLFNGAEESGLLGSHAFITQHPWSKNIK 218 (834)
T ss_pred CCCCcchhHHHHHHHHHHHhhcCCCcc---cccEEEEecCcccchhhhcccceecChhhhhhh
Confidence 455699999999999988765321111 456788999999999998887643 4444433
No 153
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=21.72 E-value=1.8e+02 Score=24.33 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCCCccccccccccccCCCeEEEeecCcEEEEEEeCC
Q 009941 76 HATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQ 123 (522)
Q Consensus 76 hav~~~~~~L~~~GF~el~e~~~w~l~~g~k~~~~r~g~~liAf~~G~ 123 (522)
..++.+.++|+++|-+.+.+...|. ...-|+.|..| +.+-+..|.
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~DP~G-n~iel~~~~ 110 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAPPGAD--PDGVWFRDPDG-NLLQVKVAE 110 (112)
T ss_pred hhHHHHHHHHHHcCCceecCCCcCC--CCEEEEECCCC-CEEEEecCC
Confidence 5678899999999987655433332 12357778888 888887664
Done!