Query 009943
Match_columns 522
No_of_seqs 325 out of 1764
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 2.4E-19 8.2E-24 143.3 5.7 60 251-310 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.7 1.1E-18 3.6E-23 139.6 5.5 58 159-217 2-62 (63)
3 3igm_B PF14_0633 protein; AP2 93.5 0.041 1.4E-06 45.6 2.9 29 155-183 3-31 (77)
4 1u3e_M HNH homing endonuclease 74.9 0.31 1E-05 44.7 -2.0 88 197-292 55-146 (174)
5 1u3e_M HNH homing endonuclease 74.4 0.15 5E-06 46.8 -4.2 38 160-199 109-146 (174)
6 3eik_A Tata-box-binding protei 73.5 18 0.00062 35.1 10.0 134 158-298 75-212 (218)
7 2z8u_A Tata-box-binding protei 68.0 44 0.0015 31.5 11.1 133 158-298 45-182 (188)
8 1ais_A TBP, protein (tata-bind 62.0 49 0.0017 31.0 10.1 133 158-298 41-178 (182)
9 1mp9_A Tata-binding protein; t 59.7 68 0.0023 30.4 10.7 134 158-299 45-183 (198)
10 1z1b_A Integrase; protein-DNA 54.1 20 0.0007 34.2 6.2 41 162-205 15-55 (356)
11 3igm_B PF14_0633 protein; AP2 47.0 6.9 0.00024 32.5 1.4 21 248-268 4-25 (77)
12 1x60_A Sporulation-specific N- 37.4 31 0.0011 26.9 3.8 23 182-204 11-33 (79)
13 1rm1_A Tata-box binding protei 31.9 1.7E+02 0.0059 28.6 8.9 134 158-298 97-234 (240)
14 1z1b_A Integrase; protein-DNA 24.0 78 0.0027 30.1 4.8 42 253-298 14-55 (356)
15 1ytb_A Protein (tata binding p 21.4 3.1E+02 0.011 25.5 8.2 134 158-298 37-174 (180)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.77 E-value=2.4e-19 Score=143.34 Aligned_cols=60 Identities=38% Similarity=0.592 Sum_probs=55.8
Q ss_pred CccCceeeecccEEEEecccc-CCeeeecCCCCCHHHHHHHHHHHHHHhcCCCCccCCCCC
Q 009943 251 KYRGVTLHKCGRWEARMGQFL-GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310 (522)
Q Consensus 251 kYRGV~~~k~GKW~ArI~~~~-~~k~v~LGtFdTeEEAARAYDkAAikl~G~~A~tNFp~s 310 (522)
+|+||+++++|||+|+|+.+. +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999988999999998665 368999999999999999999999999999999999875
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.74 E-value=1.1e-18 Score=139.60 Aligned_cols=58 Identities=48% Similarity=0.823 Sum_probs=53.9
Q ss_pred CeEEeEEecCCCeEEEEEeeC---CeEEecCCCCCHHHHHHHHHHHHHHhcccccccccccc
Q 009943 159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE 217 (522)
Q Consensus 159 gYRGVt~~r~~GKW~A~I~~~---gK~i~LGtFdTeEeAArAYD~Aaikl~G~~A~~NFp~s 217 (522)
+||||++ +.+|||+|+|+++ ++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999997 4689999999994 78999999999999999999999999999999999853
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.48 E-value=0.041 Score=45.64 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.4
Q ss_pred CCCCCeEEeEEecCCCeEEEEEeeCCeEE
Q 009943 155 SRSSQYRGVTFYRRTGRWESHIWDSGKQV 183 (522)
Q Consensus 155 ~rsSgYRGVt~~r~~GKW~A~I~~~gK~i 183 (522)
..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 45799999999999999999999988753
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=74.86 E-value=0.31 Score=44.72 Aligned_cols=88 Identities=9% Similarity=-0.039 Sum_probs=52.6
Q ss_pred HHHHHHHHhccccc---cccccccc-chhhhhhhcccchhhhhhhhcccCCCCCCCCCCccCceeeecccEEEEeccccC
Q 009943 197 AYDRAAIKFRGAEA---DINFSIED-YEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG 272 (522)
Q Consensus 197 AYD~Aaikl~G~~A---~~NFp~sd-YeeeL~qm~~lSkEE~V~aLRRQs~g~pr~sSkYRGV~~~k~GKW~ArI~~~~~ 272 (522)
++...+..|.|... ..++--.+ ....+..|.-+|..|......+.... ..++||.+.+.++|.+.|. ..
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~~-----~~~~g~~~~~~~k~~~vi~--~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGTL-----NVSKAQQIAKIKNQKPIIV--IS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTCC-----CCHHHHHHHHHHTCCCEEE--EC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCcc-----cceeeeeeccCCCCceEEE--Ec
Confidence 55555666666432 12222111 22456667778888776654443211 1246776633567888883 34
Q ss_pred CeeeecCCCCCHHHHHHHHH
Q 009943 273 KKYVYLGLFDTEVEAARAYD 292 (522)
Q Consensus 273 ~k~v~LGtFdTeEEAARAYD 292 (522)
+..+||.|+|.+|||++|.
T Consensus 128 -~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp -TTSCEEEESCHHHHHHHHT
T ss_pred -CCceEEeeCCHHHHHHHHC
Confidence 5667999999999999964
No 5
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=74.42 E-value=0.15 Score=46.85 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=31.9
Q ss_pred eEEeEEecCCCeEEEEEeeCCeEEecCCCCCHHHHHHHHH
Q 009943 160 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYD 199 (522)
Q Consensus 160 YRGVt~~r~~GKW~A~I~~~gK~i~LGtFdTeEeAArAYD 199 (522)
++||.+ +..++|.+.|... +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 468876 6677899999988 7788999999999999864
No 6
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=73.52 E-value=18 Score=35.09 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=83.1
Q ss_pred CCeEEeEEecCCCeEEEEEeeCCeEEecCCCCCHHHHHHHHHHHHHHhccccccccc---ccccchhhhhhhcccchhhh
Q 009943 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINF---SIEDYEDDLKQMSNLTKEEF 234 (522)
Q Consensus 158 SgYRGVt~~r~~GKW~A~I~~~gK~i~LGtFdTeEeAArAYD~Aaikl~G~~A~~NF---p~sdYeeeL~qm~~lSkEE~ 234 (522)
.+|-||.++-+.-+-.+-|+..||-+-.|. .++|+|..|.++.+..+....-...| ....-......--.+..+++
T Consensus 75 e~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~l 153 (218)
T 3eik_A 75 KRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGL 153 (218)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred ccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHH
Confidence 467788877788889999999999887776 67999999999988877532222222 21111100000111222333
Q ss_pred hhhhcccCCCCCCCCCCccCceeee-cccEEEEeccccCCeeeecCCCCCHHHHHHHHHHHHHHh
Q 009943 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (522)
Q Consensus 235 V~aLRRQs~g~pr~sSkYRGV~~~k-~GKW~ArI~~~~~~k~v~LGtFdTeEEAARAYDkAAikl 298 (522)
....+..... ....|-|+..+- .-|-..-| +..||-+..|. .+++|+..|++.-.-.|
T Consensus 154 a~~~~~~~~Y---EPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 154 AYAHSNYCSY---EPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp HHHSTTTEEC---CTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhccCCcEE---CCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 3222222111 224678887763 45666777 77888887776 78999999998876554
No 7
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=67.98 E-value=44 Score=31.50 Aligned_cols=133 Identities=16% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCeEEeEEecCCCeEEEEEeeCCeEEecCCCCCHHHHHHHHHHHHHHhccc--c-c-ccccccccchhhhhhhcccchhh
Q 009943 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGA--E-A-DINFSIEDYEDDLKQMSNLTKEE 233 (522)
Q Consensus 158 SgYRGVt~~r~~GKW~A~I~~~gK~i~LGtFdTeEeAArAYD~Aaikl~G~--~-A-~~NFp~sdYeeeL~qm~~lSkEE 233 (522)
.+|-||.++-+.-+-.+.|+..||-+--|. .++|+|..|..+.+..+... . . ..+|.+..-.....--..+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGA-kS~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (188)
T 2z8u_A 45 EQFPGLVCRLSVPKVALLIFRSGKVNCTGA-KSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDD 123 (188)
T ss_dssp ----CEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHH
T ss_pred CCcccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHH
Confidence 467888877788888999999999887776 46678888888776655331 1 1 12332211111000001122233
Q ss_pred hhhhhcccCCCCCCCCCCccCceee-ecccEEEEeccccCCeeeecCCCCCHHHHHHHHHHHHHHh
Q 009943 234 FVHVLRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (522)
Q Consensus 234 ~V~aLRRQs~g~pr~sSkYRGV~~~-k~GKW~ArI~~~~~~k~v~LGtFdTeEEAARAYDkAAikl 298 (522)
+...+ +... =...+|-|+..+ ..-|-.+-| +..||-+..|. .+++|+..|+++....+
T Consensus 124 la~~~-~~~e---YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 124 IALMV-EGTE---YEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp HHHHS-TTEE---ECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred HHhhC-cCcE---ECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 32222 1111 123478898876 355667777 77888887775 56788999988866555
No 8
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=62.00 E-value=49 Score=30.96 Aligned_cols=133 Identities=16% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCeEEeEEecCCCeEEEEEeeCCeEEecCCCCCHHHHHHHHHHHHHHhcc--cc-c-ccccccccchhhhhhhcccchhh
Q 009943 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEE 233 (522)
Q Consensus 158 SgYRGVt~~r~~GKW~A~I~~~gK~i~LGtFdTeEeAArAYD~Aaikl~G--~~-A-~~NFp~sdYeeeL~qm~~lSkEE 233 (522)
.+|-||.++-+.-+-.+.|+..||-+--| ..++|+|..|..+.+..+.. .. . ..+|....-.....--..+..++
T Consensus 41 ~~fpgli~Rl~~P~~t~lIF~SGKiv~TG-akS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 119 (182)
T 1ais_A 41 EEFPGIICHLDDPKVALLIFSSGKLVVTG-AKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDV 119 (182)
T ss_dssp TTCSSEEEECSSSCCEEEECTTSEEEEEE-ESSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHH
T ss_pred CccccEEEEcCCCcEEEEEeCCCeEEEec-CCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHH
Confidence 46778887667778889999999877666 47888999998887766643 21 1 12332211110000001122233
Q ss_pred hhhhhcccCCCCCCCCCCccCceeee-cccEEEEeccccCCeeeecCCCCCHHHHHHHHHHHHHHh
Q 009943 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (522)
Q Consensus 234 ~V~aLRRQs~g~pr~sSkYRGV~~~k-~GKW~ArI~~~~~~k~v~LGtFdTeEEAARAYDkAAikl 298 (522)
+...+ +... =...+|-|+..+- .-|-.+-| +..||-+..|. .+++|+..|+++....+
T Consensus 120 la~~~-~~~~---YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 120 VALTL-PNCE---YEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLREL 178 (182)
T ss_dssp HHHHS-TTEE---CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhhC-CCCE---ECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 32222 1111 1234788888763 45667777 77888877775 56789999998877665
No 9
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=59.69 E-value=68 Score=30.45 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=80.5
Q ss_pred CCeEEeEEecCCCeEEEEEeeCCeEEecCCCCCHHHHHHHHHHHHHHhcc--cc-c-ccccccccchhhhhhhcccchhh
Q 009943 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AE-A-DINFSIEDYEDDLKQMSNLTKEE 233 (522)
Q Consensus 158 SgYRGVt~~r~~GKW~A~I~~~gK~i~LGtFdTeEeAArAYD~Aaikl~G--~~-A-~~NFp~sdYeeeL~qm~~lSkEE 233 (522)
.+|-||.++-+.-+-.+.|+..||-+--|. .++|+|..|.++.+..+.. -. . ..+|....-.....--..+..++
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGa-kS~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (198)
T 1mp9_A 45 DQFPGLIFRLESPKITSLIFKSGKMVVTGA-KSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDK 123 (198)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEECC-SSHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHH
T ss_pred ccccceEEEcCCCceEEEEeCCCeEEEecc-CCHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHH
Confidence 457788877778888999999999887786 4567888888887666533 11 1 12332211111000001122233
Q ss_pred hhhhhcccCCCCCCCCCCccCceeee-cccEEEEeccccCCeeeecCCCCCHHHHHHHHHHHHHHhc
Q 009943 234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCN 299 (522)
Q Consensus 234 ~V~aLRRQs~g~pr~sSkYRGV~~~k-~GKW~ArI~~~~~~k~v~LGtFdTeEEAARAYDkAAikl~ 299 (522)
+...+ +... =...+|-|+..+- .-|-.+-| +..||-+..|. .+++|+..|+++....+.
T Consensus 124 la~~~-~~~~---YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L~ 183 (198)
T 1mp9_A 124 AAFLL-ENNM---YEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKLV 183 (198)
T ss_dssp HHHHS-SSEE---CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred HHhhc-CCcE---ECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 32222 1111 1234788988763 55677777 77888887775 567889999988776663
No 10
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=54.09 E-value=20 Score=34.21 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=31.4
Q ss_pred EeEEecCCCeEEEEEeeCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 009943 162 GVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205 (522)
Q Consensus 162 GVt~~r~~GKW~A~I~~~gK~i~LGtFdTeEeAArAYD~Aaikl 205 (522)
||+ .+..|.|..+....||++.+|. |..+|..+..++...+
T Consensus 15 ~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 465 4677899988878899999996 8888877776665554
No 11
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=46.98 E-value=6.9 Score=32.50 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=17.6
Q ss_pred CCCCccCceeee-cccEEEEec
Q 009943 248 GSSKYRGVTLHK-CGRWEARMG 268 (522)
Q Consensus 248 ~sSkYRGV~~~k-~GKW~ArI~ 268 (522)
.+|+|.||+|.+ .+.|.|.-.
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~ 25 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFY 25 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEE
T ss_pred CCCCCCcEEeecCCceEEEEEe
Confidence 468999999987 688999873
No 12
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=37.42 E-value=31 Score=26.89 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q 009943 182 QVYLGGFDTAHAAARAYDRAAIK 204 (522)
Q Consensus 182 ~i~LGtFdTeEeAArAYD~Aaik 204 (522)
.|.+|.|.+.+.|.+...+....
T Consensus 11 ~vQvGaf~~~~~A~~~~~~L~~~ 33 (79)
T 1x60_A 11 KVQIGAFKVKANADSLASNAEAK 33 (79)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHHHhC
Confidence 57889999999998877665543
No 13
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=31.94 E-value=1.7e+02 Score=28.57 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=76.9
Q ss_pred CCeEEeEEecCCCeEEEEEeeCCeEEecCCCCCHHHHHHHHHHHHHHhccccc---ccccccccchhhhhhhcccchhhh
Q 009943 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEA---DINFSIEDYEDDLKQMSNLTKEEF 234 (522)
Q Consensus 158 SgYRGVt~~r~~GKW~A~I~~~gK~i~LGtFdTeEeAArAYD~Aaikl~G~~A---~~NFp~sdYeeeL~qm~~lSkEE~ 234 (522)
..|-||.++-+.-+-.+-|+..||-+--|. .++|+|..|.++.+..+....- ..||....-.....---.+..+.+
T Consensus 97 e~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGa-ks~e~a~~A~~~i~~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~l 175 (240)
T 1rm1_A 97 KRFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGL 175 (240)
T ss_dssp TTCSEEEEEEETTEEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred cccceEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHH
Confidence 467899877778889999999999887775 5677888888776666533211 133332211111100111222333
Q ss_pred hhhhcccCCCCCCCCCCccCceeee-cccEEEEeccccCCeeeecCCCCCHHHHHHHHHHHHHHh
Q 009943 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (522)
Q Consensus 235 V~aLRRQs~g~pr~sSkYRGV~~~k-~GKW~ArI~~~~~~k~v~LGtFdTeEEAARAYDkAAikl 298 (522)
.......... ....|-|+..+- .-|-...| +..||-+..|. .+++|+..|++.-.-.|
T Consensus 176 a~~~~~~~~Y---EPE~fPGLiyR~~~pkvvllI--F~SGKIviTGa-K~~~~~~~Ai~~i~p~L 234 (240)
T 1rm1_A 176 AFSHGTFSSY---EPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPVL 234 (240)
T ss_dssp HHHTTTTEEE---ETTTEEEEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhchhccEE---CCccCCceEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 3222111100 123677877663 34555666 77777776664 56778888888765443
No 14
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=24.00 E-value=78 Score=30.10 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=29.8
Q ss_pred cCceeeecccEEEEeccccCCeeeecCCCCCHHHHHHHHHHHHHHh
Q 009943 253 RGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (522)
Q Consensus 253 RGV~~~k~GKW~ArI~~~~~~k~v~LGtFdTeEEAARAYDkAAikl 298 (522)
.||..++.|.|..+. ...++++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 467777788999886 34667788996 8888876666554443
No 15
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=21.44 E-value=3.1e+02 Score=25.50 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=75.8
Q ss_pred CCeEEeEEecCCCeEEEEEeeCCeEEecCCCCCHHHHHHHHHHHHHHhcc--ccc-ccccccccchhhhhhhcccchhhh
Q 009943 158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRG--AEA-DINFSIEDYEDDLKQMSNLTKEEF 234 (522)
Q Consensus 158 SgYRGVt~~r~~GKW~A~I~~~gK~i~LGtFdTeEeAArAYD~Aaikl~G--~~A-~~NFp~sdYeeeL~qm~~lSkEE~ 234 (522)
..|-||.++-+.-|-.+-|+..||-+--|. .++|+|.+|.++.+..+.. ... ..||....-.....---.+..+.+
T Consensus 37 e~fpgli~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~l 115 (180)
T 1ytb_A 37 KRFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGL 115 (180)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred cccCCEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCccCHHHH
Confidence 467788877778888999999999877775 5677888888887666533 211 123332111110000011222333
Q ss_pred hhhhcccCCCCCCCCCCccCceeee-cccEEEEeccccCCeeeecCCCCCHHHHHHHHHHHHHHh
Q 009943 235 VHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC 298 (522)
Q Consensus 235 V~aLRRQs~g~pr~sSkYRGV~~~k-~GKW~ArI~~~~~~k~v~LGtFdTeEEAARAYDkAAikl 298 (522)
......... =....|-|+..+- .-|-...| +..||-+-.|. .+++|+..|++.-.-.|
T Consensus 116 a~~~~~~~~---YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p~L 174 (180)
T 1ytb_A 116 AFSHGTFSS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYPVL 174 (180)
T ss_dssp HHHTTTTEE---CCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhcccceE---ECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 222211111 1234677887653 33444555 67777776664 56778999988765443
Done!