Your job contains 1 sequence.
>009944
MSGRDIRYDAVGEGSRHKSSWVSGRSRTGERGRDRHHRDFKSGGDDRRRDKNYKYDREGI
RDHDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPA
AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVG
GLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA
LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVG
GLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK
MGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLA
KVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFL
EYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009944
(522 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2206001 - symbol:AT1G60900 species:3702 "Arabi... 1268 4.7e-133 2
TAIR|locus:2115280 - symbol:ATU2AF65A species:3702 "Arabi... 1185 4.0e-123 2
UNIPROTKB|Q24JZ8 - symbol:U2AF2 "Uncharacterized protein"... 596 1.1e-60 2
MGI|MGI:98886 - symbol:U2af2 "U2 small nuclear ribonucleo... 590 4.8e-60 2
RGD|1597319 - symbol:LOC690372 "similar to U2 (RNU2) smal... 590 4.8e-60 2
UNIPROTKB|P26368 - symbol:U2AF2 "Splicing factor U2AF 65 ... 589 6.1e-60 2
UNIPROTKB|E2R0G3 - symbol:U2AF2 "Uncharacterized protein"... 583 2.6e-59 2
FB|FBgn0005411 - symbol:U2af50 "U2 small nuclear riboprot... 570 6.9e-59 2
ZFIN|ZDB-GENE-050706-131 - symbol:u2af2a "U2 small nuclea... 575 1.1e-58 2
WB|WBGene00006697 - symbol:uaf-1 species:6239 "Caenorhabd... 400 7.8e-54 2
ZFIN|ZDB-GENE-040426-1881 - symbol:u2af2b "U2 small nucle... 554 1.5e-53 1
UNIPROTKB|K7ENG2 - symbol:U2AF2 "Splicing factor U2AF 65 ... 514 2.5e-49 1
FB|FBgn0034834 - symbol:LS2 "Large Subunit 2" species:722... 375 9.0e-49 3
DICTYBASE|DDB_G0286395 - symbol:u2af2 "U2 snRNP auxiliary... 398 7.5e-48 3
ASPGD|ASPL0000008688 - symbol:AN6681 species:162425 "Emer... 276 2.0e-32 2
GENEDB_PFALCIPARUM|PF14_0656 - symbol:PF14_0656 "U2 snRNP... 282 4.3e-22 2
UNIPROTKB|Q8IKE9 - symbol:PF14_0656 "U2 snRNP auxiliary f... 282 4.3e-22 2
TAIR|locus:2025860 - symbol:AT1G60830 species:3702 "Arabi... 257 8.0e-22 1
POMBASE|SPBC146.07 - symbol:prp2 "U2AF large subunit (U2A... 195 1.4e-18 2
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 160 2.0e-13 2
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 115 2.3e-13 3
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 115 2.3e-13 3
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 111 4.6e-13 3
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 115 7.0e-13 3
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 115 7.4e-13 3
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 160 7.4e-13 2
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 160 7.7e-13 2
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 160 7.7e-13 2
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 160 7.7e-13 2
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 160 7.7e-13 2
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 115 9.2e-13 3
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 109 2.2e-12 3
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 160 2.4e-12 2
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 160 2.5e-12 2
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 115 3.0e-12 3
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 160 6.4e-12 2
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 160 6.4e-12 2
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 164 3.3e-11 2
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 112 4.1e-11 3
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 111 4.3e-11 3
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 179 9.8e-11 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 157 1.0e-10 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 157 1.0e-10 1
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 136 1.2e-10 4
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 155 1.7e-10 1
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 128 1.7e-10 2
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 147 2.0e-10 3
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 156 2.6e-10 1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 153 2.7e-10 1
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 124 2.8e-10 4
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 111 3.3e-10 3
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein... 151 4.5e-10 1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 172 4.7e-10 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 159 4.9e-10 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 150 5.8e-10 1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 172 7.5e-10 1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 170 8.0e-10 1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 172 8.9e-10 1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 172 8.9e-10 1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 172 9.2e-10 1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 172 9.3e-10 1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 172 9.3e-10 1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 170 9.4e-10 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 170 1.1e-09 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 170 1.2e-09 1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 170 1.2e-09 1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 170 1.3e-09 1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 170 1.3e-09 1
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"... 170 1.3e-09 1
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac... 170 1.3e-09 1
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac... 170 1.3e-09 1
MGI|MGI:1343054 - symbol:Cstf2 "cleavage stimulation fact... 170 1.3e-09 1
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"... 170 1.4e-09 1
UNIPROTKB|F1MVI1 - symbol:CSTF2 "Cleavage stimulation fac... 170 1.4e-09 1
UNIPROTKB|I3LE23 - symbol:LOC100515986 "Uncharacterized p... 170 1.4e-09 1
UNIPROTKB|E7EWR4 - symbol:CSTF2 "Cleavage stimulation fac... 170 1.4e-09 1
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"... 170 1.5e-09 1
UNIPROTKB|G1K177 - symbol:CSTF2 "Cleavage stimulation fac... 170 1.6e-09 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 161 2.4e-09 3
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 100 2.8e-09 3
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 143 3.4e-09 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 157 3.5e-09 3
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac... 164 3.7e-09 1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 156 4.5e-09 3
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 156 5.5e-09 2
FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ... 140 7.1e-09 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 140 7.1e-09 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 160 9.8e-09 1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 152 1.1e-08 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 142 1.1e-08 2
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 143 1.3e-08 2
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 142 1.4e-08 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 142 1.4e-08 2
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 142 1.4e-08 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 142 1.5e-08 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 142 1.5e-08 2
TAIR|locus:2013016 - symbol:CSTF64 "cleavage stimulating ... 159 1.5e-08 1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 151 1.5e-08 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 142 1.6e-08 2
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 142 1.6e-08 2
WARNING: Descriptions of 335 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2206001 [details] [associations]
symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
Genevestigator:Q8L716 Uniprot:Q8L716
Length = 589
Score = 1268 (451.4 bits), Expect = 4.7e-133, Sum P(2) = 4.7e-133
Identities = 254/411 (61%), Positives = 291/411 (70%)
Query: 113 GFDXXXXXXXXXXXXXXXXQLPGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQ 169
GFD Q+P VP+ +P M NM P QLGA P++PVQ MTQQ
Sbjct: 190 GFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQ 249
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATRHARRVYVGGLPP ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEM
Sbjct: 250 ATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEM 309
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+ G
Sbjct: 310 RSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTG 369
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G EGPDR+FVGGLPYYFTE QI+ELLESFG L GF+LVKDR+TGNSKGY FCVYQDP+VT
Sbjct: 370 GLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQTSGMNTLG 409
DIACAALNG+KMGDKTLTVRRA + Q K EQE ++ Q G T
Sbjct: 430 DIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPT-- 487
Query: 410 GGMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVVIPRPDQNG 469
K++CLT+ +T GK+G LVNVVIPRP+ +
Sbjct: 488 -----------KIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDH 536
Query: 470 GETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
TPGVGKVFLEY D G + A++ ++GRKFGGN V A YYPEDKY DY
Sbjct: 537 DPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587
Score = 57 (25.1 bits), Expect = 4.7e-133, Sum P(2) = 4.7e-133
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 25 RSRTGERGRDRHHRD 39
R R+ +R RDRHHRD
Sbjct: 92 RERSKDRQRDRHHRD 106
Score = 38 (18.4 bits), Expect = 4.8e-131, Sum P(2) = 4.8e-131
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 13 EGSRHKSSWVSGRSRTGERGRD-RHHRDFKS 42
+ H+ S R R+ +R R+ RH R +S
Sbjct: 123 DDDHHRRSRDRDRRRSRDRDREVRHRRRSRS 153
Score = 37 (18.1 bits), Expect = 6.1e-131, Sum P(2) = 6.1e-131
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 23 SGRSRTGERGRDRHH-RD 39
+GR + G + RDR RD
Sbjct: 56 NGRDKDGNKDRDREKDRD 73
>TAIR|locus:2115280 [details] [associations]
symbol:ATU2AF65A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0042742 "defense
response to bacterium" evidence=IEP] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 GO:GO:0042742 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL161589 GO:GO:0000398 EMBL:Z99708 HSSP:P26368 EMBL:AF462805
EMBL:AY080711 EMBL:AY143980 EMBL:BT000965 EMBL:BX827587
IPI:IPI00524736 IPI:IPI00525889 IPI:IPI00534734 PIR:C85433
RefSeq:NP_195387.1 RefSeq:NP_849509.1 RefSeq:NP_974695.1
UniGene:At.21204 ProteinModelPortal:O23212 SMR:O23212 IntAct:O23212
STRING:O23212 PaxDb:O23212 PRIDE:O23212 EnsemblPlants:AT4G36690.1
GeneID:829822 KEGG:ath:AT4G36690 TAIR:At4g36690 eggNOG:NOG298004
HOGENOM:HOG000180745 InParanoid:O23212 KO:K12837 OMA:EDIRMEA
PhylomeDB:O23212 ProtClustDB:CLSN2915914 Genevestigator:O23212
TIGRFAMs:TIGR01642 Uniprot:O23212
Length = 573
Score = 1185 (422.2 bits), Expect = 4.0e-123, Sum P(2) = 4.0e-123
Identities = 243/414 (58%), Positives = 279/414 (67%)
Query: 113 GFDXXX-XXXXXXXXXXXXXQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQVMTQ 168
GFD Q+P P +P M NM P Q G +MP+Q MTQ
Sbjct: 173 GFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQ 232
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKFAFVE
Sbjct: 233 QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVE 292
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MR+VEEASNAM+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL GA
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGAS 352
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +V
Sbjct: 353 GGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSV 412
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQTSGMNTL 408
TDIACAALNG+KMGDKTLTVRRA + K EQE+ ++ LQ + T
Sbjct: 413 TDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATT 472
Query: 409 GGGMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVVIPRPDQN 468
V+CLT+ +T GK+G L NVVIPRP N
Sbjct: 473 -------------VVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPN 519
Query: 469 GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 522
G G+GKVFL+Y D G A+ ++GRKFGGN V A YYPEDK+ DY A
Sbjct: 520 GEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDYGA 573
Score = 46 (21.3 bits), Expect = 4.0e-123, Sum P(2) = 4.0e-123
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 3 GRDIRYDAVGEGSRHKSSWVSGRSRTGERGRDRHHRD 39
GRD + E SR +S+ R +DR HR+
Sbjct: 59 GRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRE 95
Score = 37 (18.1 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 13 EGSRHKSSWVSGRSRTGERGRDR-HHRD 39
E H+ + R E+GRD+ RD
Sbjct: 40 ESRDHERETSRSKDREREKGRDKDRERD 67
>UNIPROTKB|Q24JZ8 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:DAAA02047732
EMBL:BC114160 IPI:IPI00705989 RefSeq:NP_001068804.1
UniGene:Bt.41502 SMR:Q24JZ8 STRING:Q24JZ8
Ensembl:ENSBTAT00000003664 GeneID:507895 KEGG:bta:507895
InParanoid:Q24JZ8 NextBio:20868263 Uniprot:Q24JZ8
Length = 475
Score = 596 (214.9 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 137/359 (38%), Positives = 193/359 (53%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 194
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 195 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 247
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 248 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQ 401
Y D VTD A A LNG+++GDK L V+RA+ + + + + LQ
Sbjct: 306 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPLSTINQTPVTLQ 359
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVV 461
G+ + + + G +VLCL + CGKYG + ++
Sbjct: 360 VPGL--MSSQVQMGGHP-TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECGKYGLVKSIE 416
Query: 462 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
IPRP +G E PG GK+F+E+ C A L+GRKF V Y D Y +D+
Sbjct: 417 IPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
Score = 43 (20.2 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 15 SRH-KSSWVSGRSRTGER---GRDRHHRDFKS 42
+RH K S RSR +R RDR +RD +S
Sbjct: 22 NRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRS 53
>MGI|MGI:98886 [details] [associations]
symbol:U2af2 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IDA] [GO:0016607 "nuclear speck" evidence=TAS]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0070742 "C2H2 zinc finger domain binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:98886
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:X64587 EMBL:AK078496
IPI:IPI00113746 PIR:S22646 RefSeq:NP_001192160.1 UniGene:Mm.360389
PDB:3V4M PDBsum:3V4M ProteinModelPortal:P26369 SMR:P26369
STRING:P26369 PhosphoSite:P26369 PaxDb:P26369 PRIDE:P26369
Ensembl:ENSMUST00000005041 GeneID:22185 KEGG:mmu:22185
UCSC:uc009ezu.2 InParanoid:P26369 NextBio:302149 PMAP-CutDB:P26369
Bgee:P26369 Genevestigator:P26369 GermOnline:ENSMUSG00000030435
Uniprot:P26369
Length = 475
Score = 590 (212.7 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 136/359 (37%), Positives = 192/359 (53%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 194
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 195 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 247
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 248 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQ 401
Y D VTD A A LNG+++GDK L V+RA+ + + + + LQ
Sbjct: 306 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSLPSTINQTPVTLQ 359
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVV 461
G+ + + + G +VLCL + C KYG + ++
Sbjct: 360 VPGL--MSSQVQMGGHP-TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE 416
Query: 462 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
IPRP +G E PG GK+F+E+ C A L+GRKF V Y D Y +D+
Sbjct: 417 IPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
Score = 43 (20.2 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 15 SRH-KSSWVSGRSRTGER---GRDRHHRDFKS 42
+RH K S RSR +R RDR +RD +S
Sbjct: 22 NRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRS 53
>RGD|1597319 [details] [associations]
symbol:LOC690372 "similar to U2 (RNU2) small nuclear RNA
auxiliary factor 2 isoform b" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0070742 "C2H2 zinc
finger domain binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1597319 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
KO:K12837 TIGRFAMs:TIGR01642 CTD:11338 IPI:IPI00366387
RefSeq:XP_003748811.1 UniGene:Rn.15383 ProteinModelPortal:F2Z3T9
SMR:F2Z3T9 PRIDE:F2Z3T9 Ensembl:ENSRNOT00000021391 GeneID:308335
KEGG:rno:308335 NextBio:740780 Uniprot:F2Z3T9
Length = 475
Score = 590 (212.7 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 136/359 (37%), Positives = 192/359 (53%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 194
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 195 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 247
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 248 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQ 401
Y D VTD A A LNG+++GDK L V+RA+ + + + + LQ
Sbjct: 306 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSLPSTINQTPVTLQ 359
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVV 461
G+ + + + G +VLCL + C KYG + ++
Sbjct: 360 VPGL--MSSQVQMGGHP-TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE 416
Query: 462 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
IPRP +G E PG GK+F+E+ C A L+GRKF V Y D Y +D+
Sbjct: 417 IPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
Score = 43 (20.2 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 15 SRH-KSSWVSGRSRTGER---GRDRHHRDFKS 42
+RH K S RSR +R RDR +RD +S
Sbjct: 22 NRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRS 53
>UNIPROTKB|P26368 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0070742
"C2H2 zinc finger domain binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006406 GO:GO:0000398
EMBL:CH471135 Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:4FXW PDBsum:4FXW
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP PDB:1JMT PDBsum:1JMT EMBL:X64044 EMBL:BC008740
EMBL:BC030574 IPI:IPI00031556 IPI:IPI00830039 PIR:S20250
RefSeq:NP_001012496.1 RefSeq:NP_009210.1 UniGene:Hs.528007 PDB:1O0P
PDB:1OPI PDB:1U2F PDB:2G4B PDB:2HZC PDB:2U2F PDB:2YH0 PDB:2YH1
PDBsum:1O0P PDBsum:1OPI PDBsum:1U2F PDBsum:2G4B PDBsum:2HZC
PDBsum:2U2F PDBsum:2YH0 PDBsum:2YH1 ProteinModelPortal:P26368
SMR:P26368 DIP:DIP-2154N IntAct:P26368 MINT:MINT-1192370
STRING:P26368 PhosphoSite:P26368 DMDM:267188 PaxDb:P26368
PRIDE:P26368 DNASU:11338 Ensembl:ENST00000308924
Ensembl:ENST00000450554 GeneID:11338 KEGG:hsa:11338 UCSC:uc002qlt.3
UCSC:uc002qlu.3 CTD:11338 GeneCards:GC19P056165 HGNC:HGNC:23156
HPA:CAB010910 MIM:191318 neXtProt:NX_P26368 PharmGKB:PA134908683
HOVERGEN:HBG062169 InParanoid:P26368 OrthoDB:EOG4PRSQX
PhylomeDB:P26368 ChiTaRS:U2AF2 EvolutionaryTrace:P26368
GenomeRNAi:11338 NextBio:43079 PMAP-CutDB:P26368 Bgee:P26368
CleanEx:HS_U2AF2 Genevestigator:P26368 GermOnline:ENSG00000063244
Uniprot:P26368
Length = 475
Score = 589 (212.4 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 136/359 (37%), Positives = 192/359 (53%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 194
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 195 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 247
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 248 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQ 401
Y D VTD A A LNG+++GDK L V+RA+ + + + + LQ
Sbjct: 306 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTINQTPVTLQ 359
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVV 461
G+ + + + G +VLCL + C KYG + ++
Sbjct: 360 VPGL--MSSQVQMGGHP-TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE 416
Query: 462 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
IPRP +G E PG GK+F+E+ C A L+GRKF V Y D Y +D+
Sbjct: 417 IPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
Score = 43 (20.2 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 15 SRH-KSSWVSGRSRTGER---GRDRHHRDFKS 42
+RH K S RSR +R RDR +RD +S
Sbjct: 22 NRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRS 53
>UNIPROTKB|E2R0G3 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00690000102089 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP CTD:11338 EMBL:AAEX03000723 RefSeq:XP_003638845.1
ProteinModelPortal:E2R0G3 Ensembl:ENSCAFT00000004031
GeneID:100687048 KEGG:cfa:100687048 Uniprot:E2R0G3
Length = 471
Score = 583 (210.3 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 136/359 (37%), Positives = 191/359 (53%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 194
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 195 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 247
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 248 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQ 401
Y D VTD A A LNG+++GDK L V+RA+ + + + LQ
Sbjct: 306 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA----------TLSTINQTPVTLQ 355
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVV 461
G+ + + + G +VLCL + C KYG + ++
Sbjct: 356 VPGL--MSSQVQMGGHP-TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE 412
Query: 462 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
IPRP +G E PG GK+F+E+ C A L+GRKF V Y D Y +D+
Sbjct: 413 IPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 470
Score = 43 (20.2 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 15 SRH-KSSWVSGRSRTGER---GRDRHHRDFKS 42
+RH K S RSR +R RDR +RD +S
Sbjct: 22 NRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRS 53
>FB|FBgn0005411 [details] [associations]
symbol:U2af50 "U2 small nuclear riboprotein auxiliary factor
50" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=TAS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051168 "nuclear export" evidence=IMP]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 EMBL:AE014298 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0051168
GO:GO:0005686 GO:GO:0000381 GO:GO:0008187
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 EMBL:L23404 EMBL:AY069320 PIR:A48249
RefSeq:NP_001245710.1 RefSeq:NP_476891.1 UniGene:Dm.5430
ProteinModelPortal:Q24562 SMR:Q24562 DIP:DIP-23323N IntAct:Q24562
MINT:MINT-790159 STRING:Q24562 PaxDb:Q24562 PRIDE:Q24562
EnsemblMetazoa:FBtr0074234 EnsemblMetazoa:FBtr0307178 GeneID:32602
KEGG:dme:Dmel_CG9998 CTD:32602 FlyBase:FBgn0005411
InParanoid:Q24562 OrthoDB:EOG40CFZH PhylomeDB:Q24562
GenomeRNAi:32602 NextBio:779380 Bgee:Q24562 GermOnline:CG9998
Uniprot:Q24562
Length = 416
Score = 570 (205.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 144/394 (36%), Positives = 201/394 (51%)
Query: 134 PGVPSAVPEMAQNMLPFGATQLGAFPLMP---VQVMTQQATRHARRVYVGGLPPLANEQA 190
PG P + M G P P V V+ TR ARR+YVG +P E+
Sbjct: 49 PGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEE 108
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 109 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 168 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 219
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 220 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 279
Query: 368 VRRATASSGQSKTEQESXXXXXXXXXXXXKMALQTSGM-NTLGGGMSLFGETLAKVLCLT 426
V+RA+ + K Q + + LQ G+ N + G +VLCL
Sbjct: 280 VQRASVGA---KNAQNAANTTQS-------VMLQVPGLSNVVTSGPP------TEVLCLL 323
Query: 427 EAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAV 486
+T C KYG + +V IPRP + G E PG GKVF+E+ +
Sbjct: 324 NMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIE-GVEVPGCGKVFVEFNSVL 382
Query: 487 GCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
C A+ AL+GRKF V Y+ DKY +++
Sbjct: 383 DCQKAQQALTGRKFSDRVVVTSYFDPDKYHRREF 416
Score = 52 (23.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 13 EGSRHKSSWVSGRSRTGERGRDR-HHRD 39
E RH+S R R ER RDR HHR+
Sbjct: 11 ERRRHRSR---SRDRHRERSRDRRHHRN 35
>ZFIN|ZDB-GENE-050706-131 [details] [associations]
symbol:u2af2a "U2 small nuclear RNA auxiliary
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0046660 "female sex
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050706-131 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0046660
GeneTree:ENSGT00690000102089 TIGRFAMs:TIGR01642 EMBL:CR848818
IPI:IPI00503978 Ensembl:ENSDART00000124875 Bgee:E7F8Y4
Uniprot:E7F8Y4
Length = 470
Score = 575 (207.5 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 134/359 (37%), Positives = 190/359 (52%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+++ FF+ M +GG + PG+ V+ V IN +
Sbjct: 129 PVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 187
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P + P P +L V
Sbjct: 188 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPG-SLP-V 245
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 246 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 303
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQ 401
Y D ++D A A LNG+++GDK L V+RA S G T + LQ
Sbjct: 304 EYVDVNISDQAIAGLNGMQLGDKKLLVQRA--SVGSKNT--------TLTGINQTPVTLQ 353
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVV 461
G+ + ++ G +VLCL + C KYG + ++
Sbjct: 354 VPGL--MNSSVNQMGGIPTEVLCLMNMVAPEELLDDEEYEEIVEDVRDECSKYGQVKSIE 411
Query: 462 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
IPRP +G + PG GK+F+E+ A L+GRKF V Y D Y +D+
Sbjct: 412 IPRP-VDGLDIPGTGKIFVEFMSVFDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRRDF 469
Score = 45 (20.9 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 13 EGSRHKSSWVSGRSRTGERGRDRHHRD 39
E H+ S RSR+ +R R R RD
Sbjct: 22 ENKHHRRS--GSRSRSRDRDRKRRSRD 46
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 400 (145.9 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 97/246 (39%), Positives = 140/246 (56%)
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
G + P +NM G G+ V V+ T +RR+YVG +P NE+A+ F
Sbjct: 145 GFETTTPMEYKNMQAAGQVPRGSVQ-SAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDF 203
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 254
F+Q M G A PG+ ++ IN +K FAF+E R+++E + MA DGI F G ++VR
Sbjct: 204 FNQQMHLCGLAQA-PGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 262
Query: 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314
RP DY P+ Q + ++N + + +++ + A +++F+GGLP Y TE Q+KEL
Sbjct: 263 RPRDYQPS--------QNTFDMN-SRMPVSTIVVDSA---NKIFIGGLPNYLTEDQVKEL 310
Query: 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
L SFG L F L D GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+
Sbjct: 311 LCSFGPLKAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACAN 369
Query: 375 SGQSKT 380
+ T
Sbjct: 370 QQRHNT 375
Score = 174 (66.3 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 45/158 (28%), Positives = 65/158 (41%)
Query: 363 DKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQTSGMNTLGGGMSLFGETLAKV 422
D TLT + +G +++ L S G +S ++
Sbjct: 340 DPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNTNLPNSASAIAGIDLSQGAGRATEI 399
Query: 423 LCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVVIPRPDQNGGETPGVGKVFLEY 482
LCL +T C KYG + ++ IPRP ++ PGVGKVF+E+
Sbjct: 400 LCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDH-PVPGVGKVFVEF 458
Query: 483 YDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
C A+ AL+GRKF TV YY DKY N+ +
Sbjct: 459 ASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 496
>ZFIN|ZDB-GENE-040426-1881 [details] [associations]
symbol:u2af2b "U2 small nuclear RNA auxiliary
factor 2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0046660 "female sex differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1881 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:BX950195 EMBL:BC065869
IPI:IPI00502836 RefSeq:NP_991252.1 UniGene:Dr.77328 SMR:Q6P022
STRING:Q6P022 Ensembl:ENSDART00000023571 GeneID:402989
KEGG:dre:402989 CTD:402989 InParanoid:Q6P022 OMA:HERDKEN
NextBio:20816796 Uniprot:Q6P022
Length = 475
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 134/359 (37%), Positives = 186/359 (51%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+++ FF+ M +GG + PG+ V+ V IN +
Sbjct: 139 PVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 197
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+ ++++RRP DY P PG S N ++
Sbjct: 198 KNFAFLEFRSVDETTQAMAFDGIIFQAQSLKIRRPHDYQPL------PGM-SENPSVYVP 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 251 GVVSTVV--PDSIHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 308
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQ 401
Y D V D A A LNG+++ DK L V+RA S G S + LQ
Sbjct: 309 EYVDVNVNDQAIAGLNGMQLADKKLLVQRA--SVGAKNATMTSINET--------PVTLQ 358
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVV 461
G+ + M G +VLCL + C KYG + ++
Sbjct: 359 VPGLTS--NPMIQMGGIPTEVLCLMNMVAPEELIDDEEYEEIVEDVKEECSKYGQVKSIE 416
Query: 462 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
IPRP +G + PG GK+F+E+ A L+GRKF V Y D Y +D+
Sbjct: 417 IPRP-VDGLDIPGTGKIFVEFTSVYDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRRDF 474
>UNIPROTKB|K7ENG2 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC008735 TIGRFAMs:TIGR01642 HGNC:HGNC:23156
Ensembl:ENST00000590551 Uniprot:K7ENG2
Length = 307
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 121/327 (37%), Positives = 171/327 (52%)
Query: 194 FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253
FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++
Sbjct: 4 FFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 62
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
RRP DY P PG S N ++ G+ S + + ++F+GGLP Y + Q+KE
Sbjct: 63 RRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKE 113
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
LL SFG L F+LVKD TG SKGY FC Y D VTD A A LNG+++GDK L V+RA+
Sbjct: 114 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 173
Query: 374 SSGQSKTEQESXXXXXXXXXXXXKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITXXX 433
+ + + LQ G+ + + + G +VLCL +
Sbjct: 174 GAKNA----------TLSTINQTPVTLQVPGL--MSSQVQMGGHP-TEVLCLMNMVLPEE 220
Query: 434 XXXXXXXXXXXXXXXXXCGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKN 493
C KYG + ++ IPRP +G E PG GK+F+E+ C A
Sbjct: 221 LLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQ 279
Query: 494 ALSGRKFGGNTVNAFYYPEDKYFNKDY 520
L+GRKF V Y D Y +D+
Sbjct: 280 GLTGRKFANRVVVTKYCDPDSYHRRDF 306
>FB|FBgn0034834 [details] [associations]
symbol:LS2 "Large Subunit 2" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0060968 "regulation of gene silencing"
evidence=IMP] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033119 GO:GO:0060968
HSSP:P26368 eggNOG:NOG298004 TIGRFAMs:TIGR01642 EMBL:AY075220
ProteinModelPortal:Q8T8Y4 SMR:Q8T8Y4 STRING:Q8T8Y4 PaxDb:Q8T8Y4
PRIDE:Q8T8Y4 FlyBase:FBgn0034834 InParanoid:Q8T8Y4
OrthoDB:EOG40K6F6 ArrayExpress:Q8T8Y4 Bgee:Q8T8Y4 Uniprot:Q8T8Y4
Length = 449
Score = 375 (137.1 bits), Expect = 9.0e-49, Sum P(3) = 9.0e-49
Identities = 83/213 (38%), Positives = 129/213 (60%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP----GDAVVNVYINHEKKFAF 226
TR ARR+YVG +P ++ + FF+ + A+G + G+AV+ N EK FAF
Sbjct: 107 TRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAF 166
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPS-----PNLNLA-- 279
+E R+++EAS A+ DG++F G +++RRP DY P + ++ + P +N+A
Sbjct: 167 LEFRSIDEASQALNFDGMVFRGQTLKIRRPHDYQPVPSISVSAMESYRSFRVPAINVAQQ 226
Query: 280 -AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
AV L I + P++++VGGLP + Q+KELL+SFG L G +LV D +T +KG+
Sbjct: 227 PAVTLPVTTIV-PDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGF 285
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F Y DP+VTD A A L+G+ +GD+ L V+R+
Sbjct: 286 AFFEYCDPSVTDHAIAGLHGMLLGDRRLVVQRS 318
Score = 125 (49.1 bits), Expect = 9.0e-49, Sum P(3) = 9.0e-49
Identities = 29/71 (40%), Positives = 38/71 (53%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETP--GVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
C K+G + ++ IPRP G+ P G GKVF+++ A ALSGRKF G V
Sbjct: 380 CAKFGEVRSIKIPRPI---GQFPKRGCGKVFVQFESVEDSQKALKALSGRKFSGRIVMTS 436
Query: 509 YYPEDKYFNKD 519
YY +KY D
Sbjct: 437 YYDPEKYLADD 447
Score = 37 (18.1 bits), Expect = 9.0e-49, Sum P(3) = 9.0e-49
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 20 SWVSGRSRTGERGRDR 35
SW + RSR+ R R R
Sbjct: 10 SWNALRSRSRSRSRSR 25
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 398 (145.2 bits), Expect = 7.5e-48, Sum P(3) = 7.5e-48
Identities = 93/239 (38%), Positives = 131/239 (54%)
Query: 141 PEMAQNMLPFGATQLGAFP-LMPVQVMTQQAT---RHARRVYVGGLPPLANEQAIATFFS 196
P QN + QL L Q Q T + +RR+YVG +PP ++ + FF+
Sbjct: 230 PMFQQNQMFMQQQQLQQQQQLQQQQQQNNQETPQKKQSRRIYVGNIPPGISDSELMEFFN 289
Query: 197 QVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRP 256
+ A N+ PG VV IN K FAF+E R+ EEA+NAM DGI + +++RRP
Sbjct: 290 AAVLAANLNTK-PGPPVVFCQINAPKCFAFIEFRSPEEATNAMRFDGISLKNFTLKIRRP 348
Query: 257 TDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLE 316
DY T G P++ V + ++++VGGLP +E Q+K LL
Sbjct: 349 KDYQSTSDNTGGNASLLPSIVPTNV---------PDSENKIYVGGLPSNLSEEQVKSLLS 399
Query: 317 SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
++G L F+LVKD +TG SKG+ FC YQD VTD+AC+ LNG+ + DKTL V+RA+ S
Sbjct: 400 AYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVACSKLNGIPLADKTLVVQRASIGS 458
Score = 101 (40.6 bits), Expect = 7.5e-48, Sum P(3) = 7.5e-48
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C ++G + ++ +P P +N E V +V++E+ A AL GRK+ G + + YY
Sbjct: 599 CEQFGEVQSIWLPLPSKNPLE---VTRVYVEFSQVEFAQKACLALGGRKYNGRVLFSAYY 655
Query: 511 PEDKYF 516
PED +F
Sbjct: 656 PEDLFF 661
Score = 46 (21.3 bits), Expect = 7.5e-48, Sum P(3) = 7.5e-48
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 14 GSRHKSSWVSGRSRTGERGRDRHH---RDFKSGG 44
GS SS S R R +R RDR RD GG
Sbjct: 31 GSSSSSSSSSRRDRDRDRDRDRDRDRDRDRDRGG 64
Score = 39 (18.8 bits), Expect = 4.0e-47, Sum P(3) = 4.0e-47
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 16 RHKSSWVSGRSRTGERGRDRHH 37
R K S + R +R RDR H
Sbjct: 7 REKRSGDRDKDRDRDRDRDRDH 28
>ASPGD|ASPL0000008688 [details] [associations]
symbol:AN6681 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0000243 "commitment complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001301 TIGRFAMs:TIGR01642
ProteinModelPortal:C8V1L6 EnsemblFungi:CADANIAT00007466 OMA:CISAQIS
Uniprot:C8V1L6
Length = 547
Score = 276 (102.2 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 82/256 (32%), Positives = 120/256 (46%)
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 192
LPG P P M + L Q G + +R A+R++V LPP A + +
Sbjct: 184 LPGAPRQQP-MDPSRLQAFMNQSGGGSA-DTSALKPSNSRQAKRLFVYNLPPNATVENLV 241
Query: 193 TFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIF------ 246
+FF+ + + N D ++ I+ + FA +E ++ + + A+ALDGI
Sbjct: 242 SFFNLQLNGL--NVIQSVDPCISAQISDDHSFALLEFKSPNDTTVALALDGITMGEHESN 299
Query: 247 --EGVA--VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGL 302
G A + VRRP DY PNL + ASG + P+++ V +
Sbjct: 300 GENGAAKGLEVRRPKDYIV------------PNLAEQDLEGASGMKDVPDSPNKICVSNI 347
Query: 303 PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362
P Y E + LL+SFG L F LVKD T S+G FC Y DP T IA LNG+++G
Sbjct: 348 PQYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAFCEYADPNTTTIAVQGLNGMELG 407
Query: 363 DKTLTVRRATASSGQS 378
D+ L V RA+ Q+
Sbjct: 408 DRHLKVVRASIGMTQA 423
Score = 137 (53.3 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 33/121 (27%), Positives = 56/121 (46%)
Query: 401 QTSGMNTLGGGMSLFGETLA------KVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKY 454
Q +G++ MS+F +T + +VL L +T C K+
Sbjct: 422 QAAGLDMGVNAMSMFAKTTSQDLESSRVLQLLNMVTPEELMDNEDYEEICDDVRDECSKF 481
Query: 455 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514
G ++ + IPRP ++PGVGK+F+++ A +L+GRKF TV Y+ E+
Sbjct: 482 GRVLELKIPRPTGGSRQSPGVGKIFVKFETIEATTAALKSLAGRKFSDRTVVTTYFSEEN 541
Query: 515 Y 515
+
Sbjct: 542 F 542
>GENEDB_PFALCIPARUM|PF14_0656 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor,
putative" species:5833 "Plasmodium falciparum" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 282 (104.3 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 74/242 (30%), Positives = 114/242 (47%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R+++ LP+ + QIK+LLE FG L F+++KD +TG +KGYGF Y+D + T +A
Sbjct: 589 NRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGLNKGYGFFEYEDSSCTQLAIH 648
Query: 355 ALNGLKMGDKTLTVRRATAS------SGQSKTEQESXXXXXXXXXXXXKMALQTSGM--- 405
ALNG G L V++AT + + + ++ + L S +
Sbjct: 649 ALNGFVCGQNILNVKKATFNKQPTTITTNNNMNNQNPNFIALPNNSDVPVTLLPSSISQK 708
Query: 406 ---NTLGG----GMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLV 458
N++ G GE +KV+ LT A+ KYGTL
Sbjct: 709 ILSNSIIGLQVQASRKIGEKSSKVVQLTNAVFQEDLIVDSQYEEILKEVKEEAEKYGTLQ 768
Query: 459 NVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNK 518
N+VIP+P+++ T GVGK+FL Y D A+ +GR F V A +Y E+ +
Sbjct: 769 NIVIPKPNKDLSYTEGVGKIFLHYADEATARKAQYMFNGRLFEKRVVCAAFYSEEHFLKG 828
Query: 519 DY 520
Y
Sbjct: 829 KY 830
Score = 274 (101.5 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 68/218 (31%), Positives = 114/218 (52%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP---GDA----VVNVYI-N 219
Q + R++Y+G +PP + ++ + FF+ + A+ +S+ GD V+ I N
Sbjct: 449 QDTDKKQRKLYIGNIPPNSKQEDVVDFFNNSILAVIKDSSLDVKIGDVQLMPVIKCEIFN 508
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA--ALGPGQPSPNLN 277
+ +F F+E RTV+ + LD I + +R+ RP DY P A N++
Sbjct: 509 SDSRFCFLEFRTVQITWLCLKLDSIPYNNYCLRIGRPHDYIPPPEGDPAFTTVFTDINMD 568
Query: 278 LAAVGLASGAIG---GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
+ S + ++ +R+++ LP+ + QIK+LLE FG L F+++KD +TG
Sbjct: 569 VFEKLRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGL 628
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+KGYGF Y+D + T +A ALNG G L V++AT
Sbjct: 629 NKGYGFFEYEDSSCTQLAIHALNGFVCGQNILNVKKAT 666
Score = 38 (18.4 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 14 GSRHKSSWVSGRSRTGERGRDRH 36
G+R+ +S RSR R +DR+
Sbjct: 213 GNRNSTS--RSRSRNRNRSKDRY 233
>UNIPROTKB|Q8IKE9 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 282 (104.3 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 74/242 (30%), Positives = 114/242 (47%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R+++ LP+ + QIK+LLE FG L F+++KD +TG +KGYGF Y+D + T +A
Sbjct: 589 NRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGLNKGYGFFEYEDSSCTQLAIH 648
Query: 355 ALNGLKMGDKTLTVRRATAS------SGQSKTEQESXXXXXXXXXXXXKMALQTSGM--- 405
ALNG G L V++AT + + + ++ + L S +
Sbjct: 649 ALNGFVCGQNILNVKKATFNKQPTTITTNNNMNNQNPNFIALPNNSDVPVTLLPSSISQK 708
Query: 406 ---NTLGG----GMSLFGETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLV 458
N++ G GE +KV+ LT A+ KYGTL
Sbjct: 709 ILSNSIIGLQVQASRKIGEKSSKVVQLTNAVFQEDLIVDSQYEEILKEVKEEAEKYGTLQ 768
Query: 459 NVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNK 518
N+VIP+P+++ T GVGK+FL Y D A+ +GR F V A +Y E+ +
Sbjct: 769 NIVIPKPNKDLSYTEGVGKIFLHYADEATARKAQYMFNGRLFEKRVVCAAFYSEEHFLKG 828
Query: 519 DY 520
Y
Sbjct: 829 KY 830
Score = 274 (101.5 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 68/218 (31%), Positives = 114/218 (52%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP---GDA----VVNVYI-N 219
Q + R++Y+G +PP + ++ + FF+ + A+ +S+ GD V+ I N
Sbjct: 449 QDTDKKQRKLYIGNIPPNSKQEDVVDFFNNSILAVIKDSSLDVKIGDVQLMPVIKCEIFN 508
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA--ALGPGQPSPNLN 277
+ +F F+E RTV+ + LD I + +R+ RP DY P A N++
Sbjct: 509 SDSRFCFLEFRTVQITWLCLKLDSIPYNNYCLRIGRPHDYIPPPEGDPAFTTVFTDINMD 568
Query: 278 LAAVGLASGAIG---GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
+ S + ++ +R+++ LP+ + QIK+LLE FG L F+++KD +TG
Sbjct: 569 VFEKLRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGL 628
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+KGYGF Y+D + T +A ALNG G L V++AT
Sbjct: 629 NKGYGFFEYEDSSCTQLAIHALNGFVCGQNILNVKKAT 666
Score = 38 (18.4 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 14 GSRHKSSWVSGRSRTGERGRDRH 36
G+R+ +S RSR R +DR+
Sbjct: 213 GNRNSTS--RSRSRNRNRSKDRY 233
>TAIR|locus:2025860 [details] [associations]
symbol:AT1G60830 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC079675 HSSP:P26368 eggNOG:NOG298004 KO:K12837
UniGene:At.52293 IPI:IPI00520905 PIR:G96633 RefSeq:NP_564764.1
ProteinModelPortal:Q9C6C1 SMR:Q9C6C1 EnsemblPlants:AT1G60830.1
GeneID:842376 KEGG:ath:AT1G60830 TAIR:At1g60830
HOGENOM:HOG000152174 InParanoid:Q9C6C1 PhylomeDB:Q9C6C1
Genevestigator:Q9C6C1 Uniprot:Q9C6C1
Length = 111
Score = 257 (95.5 bits), Expect = 8.0e-22, P = 8.0e-22
Identities = 51/105 (48%), Positives = 63/105 (60%)
Query: 416 GETLAKVLCLTEAITXXXXXXXXXXXXXXXXXXXXCGKYGTLVNVVIPRPDQNGGETPGV 475
G T K++CLT+ +T GK+G LVNVVIPRP+ + TPGV
Sbjct: 5 GGTPTKIVCLTQVVTADDLRDDAEYADIMEDMSQEGGKFGNLVNVVIPRPNPDHDPTPGV 64
Query: 476 GKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520
GKVFLEY D G + A++ ++GRKFGGN V A YYPEDKY DY
Sbjct: 65 GKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 109
>POMBASE|SPBC146.07 [details] [associations]
symbol:prp2 "U2AF large subunit (U2AF-59)" species:4896
"Schizosaccharomyces pombe" [GO:0000243 "commitment complex"
evidence=IDA] [GO:0000348 "mRNA branch site recognition"
evidence=ISS] [GO:0000349 "generation of catalytic spliceosome for
first transesterification step" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=TAS] [GO:0030515 "snoRNA binding"
evidence=TAS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC146.07 GO:GO:0000166 EMBL:CU329671 GO:GO:0030515
GO:GO:0003729 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0000243 GO:GO:0000349 GO:GO:0005686 GO:GO:0045292
OrthoDB:EOG44XNS9 GO:GO:0000348 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 OMA:TQMGGLP EMBL:L22577 EMBL:AB027985 PIR:A48250
RefSeq:NP_595396.1 ProteinModelPortal:P36629 IntAct:P36629
STRING:P36629 PRIDE:P36629 EnsemblFungi:SPBC146.07.1 GeneID:2539645
KEGG:spo:SPBC146.07 NextBio:20800799 Uniprot:P36629
Length = 517
Score = 195 (73.7 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 60/228 (26%), Positives = 110/228 (48%)
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 192
LPG P A + +L F + G+ + P + A+R ARR+ V G+P E A
Sbjct: 158 LPGAPRAAVTDPEKLLEFARSAEGSI-IAPPPPLQPGASRQARRLVVTGIPNEFVEDAFV 216
Query: 193 TFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG-VAV 251
+F + + + +V + E+ FA +E+ T E+A+ L + V +
Sbjct: 217 SFIEDLFISTTYHKPETKH-FSSVNVCKEENFAILEVATPEDATFLWGLQSESYSNDVFL 275
Query: 252 RVRRPTDYNPTLAAALGPGQPSPNLNLA-AVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310
+ +R +Y + P Q +P ++ + A + + D++++ LP E Q
Sbjct: 276 KFQRIQNY-------IVP-QITPEVSQKRSDDYAKNDV--LDSKDKIYISNLPLNLGEDQ 325
Query: 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358
+ ELL+ FG L F L+K+ G+SKG+ FC +++P+ ++A + L+G
Sbjct: 326 VVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDG 373
Score = 100 (40.3 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513
YG L+++ IPR G GKVF+ Y D A + G KF T+ +Y ED
Sbjct: 451 YGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKGCKFNDRTIVIAFYGED 510
Query: 514 KY 515
Y
Sbjct: 511 CY 512
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 160 (61.4 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 78 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 137
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 138 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 180
Score = 84 (34.6 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C K+G ++++ + D+N + G V+++ A NAL GR F G + A Y
Sbjct: 297 CNKHGGVIHIYV---DKNSAQ----GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 349
Query: 511 PEDKYFN 517
P Y N
Sbjct: 350 PLPTYHN 356
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 115 (45.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 264 AAALGPGQP-SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A +G G P SP ++AA + AI RV+VG + Y E I++ FG +
Sbjct: 107 AVTMGFGDPLSPLQSMAAQRQRALAI-----MCRVYVGSIYYELGEDTIRQAFAPFGPIK 161
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
D+ D T KG+ F Y+ P +A +N + +G + + V R + + GQ++
Sbjct: 162 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS-NIGQAQ 217
Score = 111 (44.1 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 231 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 290
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 291 SMNLFDLGGQYLRVGKA 307
Score = 109 (43.4 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
CGK+G VN VI ++ G E + K+F+E+ A A AL+GR FGG V A
Sbjct: 492 CGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAE 550
Query: 509 YYPEDKYFNKDYSA 522
Y ++++ N D SA
Sbjct: 551 VYDQERFDNSDLSA 564
Score = 74 (31.1 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 148 LPFGATQLG-AFPLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIG 203
L A +G PL P+Q M Q R RVYVG + E I F+
Sbjct: 103 LQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF----- 157
Query: 204 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 158 GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 212
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 115 (45.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 264 AAALGPGQP-SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A +G G P SP ++AA + AI RV+VG + Y E I++ FG +
Sbjct: 107 AVTMGFGDPLSPLQSMAAQRQRALAI-----MCRVYVGSIYYELGEDTIRQAFAPFGPIK 161
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
D+ D T KG+ F Y+ P +A +N + +G + + V R + + GQ++
Sbjct: 162 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS-NIGQAQ 217
Score = 111 (44.1 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 231 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 290
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 291 SMNLFDLGGQYLRVGKA 307
Score = 109 (43.4 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
CGK+G VN VI ++ G E + K+F+E+ A A AL+GR FGG V A
Sbjct: 492 CGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAE 550
Query: 509 YYPEDKYFNKDYSA 522
Y ++++ N D SA
Sbjct: 551 VYDQERFDNSDLSA 564
Score = 74 (31.1 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 148 LPFGATQLG-AFPLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIG 203
L A +G PL P+Q M Q R RVYVG + E I F+
Sbjct: 103 LQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF----- 157
Query: 204 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 158 GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 212
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 111 (44.1 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 227 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 286
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 287 SMNLFDLGGQYLRVGKA 303
Score = 110 (43.8 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+N + +G + + V R + + GQ++
Sbjct: 191 MNSVMLGGRNIKVGRPS-NIGQAQ 213
Score = 103 (41.3 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
CGK+G VN VI ++ G E + K+F+E+ A A AL+GR F G V A
Sbjct: 488 CGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAE 546
Query: 509 YYPEDKYFNKDYSA 522
Y ++++ N D SA
Sbjct: 547 VYDQERFDNSDLSA 560
Score = 77 (32.2 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 34/116 (29%), Positives = 51/116 (43%)
Query: 148 LPFGATQLG-AFPLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIG 203
L A +G PL+P+Q M Q R RVYVG + E I F+
Sbjct: 99 LQMAAVTMGFGKPLLPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF----- 153
Query: 204 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 154 GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 208
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 115 (45.5 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 264 AAALGPGQP-SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A +G G P SP ++AA + AI RV+VG + Y E I++ FG +
Sbjct: 65 AVTMGFGDPLSPLQSMAAQRQRALAI-----MCRVYVGSIYYELGEDTIRQAFAPFGPIK 119
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
D+ D T KG+ F Y+ P +A +N + +G + + V R + + GQ++
Sbjct: 120 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS-NIGQAQ 175
Score = 111 (44.1 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 189 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 248
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 249 SMNLFDLGGQYLRVGKA 265
Score = 103 (41.3 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
CGK+G VN VI ++ G E + K+F+E+ A A AL+GR F G V A
Sbjct: 450 CGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRWFAGRKVVAE 508
Query: 509 YYPEDKYFNKDYSA 522
Y ++++ N D SA
Sbjct: 509 VYDQERFDNSDLSA 522
Score = 74 (31.1 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 148 LPFGATQLG-AFPLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIG 203
L A +G PL P+Q M Q R RVYVG + E I F+
Sbjct: 61 LQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF----- 115
Query: 204 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 116 GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 170
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 115 (45.5 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 264 AAALGPGQP-SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A +G G P SP ++AA + AI RV+VG + Y E I++ FG +
Sbjct: 73 AVTMGFGDPLSPLQSMAAQRQRALAI-----MCRVYVGSIYYELGEDTIRQAFAPFGPIK 127
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
D+ D T KG+ F Y+ P +A +N + +G + + V R + + GQ++
Sbjct: 128 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS-NIGQAQ 183
Score = 111 (44.1 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 197 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 256
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 257 SMNLFDLGGQYLRVGKA 273
Score = 103 (41.3 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
CGK+G VN VI ++ G E + K+F+E+ A A AL+GR F G V A
Sbjct: 458 CGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQALNGRWFAGRKVVAE 516
Query: 509 YYPEDKYFNKDYSA 522
Y ++++ N D SA
Sbjct: 517 VYDQERFDNSDLSA 530
Score = 74 (31.1 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 148 LPFGATQLG-AFPLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIG 203
L A +G PL P+Q M Q R RVYVG + E I F+
Sbjct: 69 LQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF----- 123
Query: 204 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 124 GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 178
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 160 (61.4 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
Score = 84 (34.6 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C K+G ++++ + D+N + G V+++ A NAL GR F G + A Y
Sbjct: 448 CNKHGGVIHIYV---DKNSAQ----GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 500
Query: 511 PEDKYFN 517
P Y N
Sbjct: 501 PLPTYHN 507
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 160 (61.4 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
Score = 84 (34.6 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C K+G ++++ + D+N + G V+++ A NAL GR F G + A Y
Sbjct: 454 CNKHGGVIHIYV---DKNSAQ----GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 506
Query: 511 PEDKYFN 517
P Y N
Sbjct: 507 PLPTYHN 513
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 160 (61.4 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
Score = 84 (34.6 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C K+G ++++ + D+N + G V+++ A NAL GR F G + A Y
Sbjct: 454 CNKHGGVIHIYV---DKNSAQ----GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 506
Query: 511 PEDKYFN 517
P Y N
Sbjct: 507 PLPTYHN 513
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 160 (61.4 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
Score = 84 (34.6 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C K+G ++++ + D+N + G V+++ A NAL GR F G + A Y
Sbjct: 454 CNKHGGVIHIYV---DKNSAQ----GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 506
Query: 511 PEDKYFN 517
P Y N
Sbjct: 507 PLPTYHN 513
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 160 (61.4 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
Score = 84 (34.6 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C K+G ++++ + D+N + G V+++ A NAL GR F G + A Y
Sbjct: 454 CNKHGGVIHIYV---DKNSAQ----GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 506
Query: 511 PEDKYFN 517
P Y N
Sbjct: 507 PLPTYHN 513
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 115 (45.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 264 AAALGPGQP-SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A +G G P SP ++AA + AI RV+VG + Y E I++ FG +
Sbjct: 102 AVTMGFGDPLSPLQSMAAQRQRALAI-----MCRVYVGSIYYELGEDTIRQAFAPFGPIK 156
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
D+ D T KG+ F Y+ P +A +N + +G + + V R + + GQ++
Sbjct: 157 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS-NIGQAQ 212
Score = 111 (44.1 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 226 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 285
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 286 SMNLFDLGGQYLRVGKA 302
Score = 103 (41.3 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
CGK+G VN VI ++ G E + K+F+E+ A A AL+GR F G V A
Sbjct: 487 CGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAE 545
Query: 509 YYPEDKYFNKDYSA 522
Y ++++ N D SA
Sbjct: 546 VYDQERFDNSDLSA 559
Score = 74 (31.1 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 148 LPFGATQLG-AFPLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIG 203
L A +G PL P+Q M Q R RVYVG + E I F+
Sbjct: 98 LQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF----- 152
Query: 204 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 153 GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 207
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 109 (43.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 153
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+N + +G + + V R + + GQ++
Sbjct: 154 MNSVMLGGRNIKVGRPS-NIGQAQ 176
Score = 107 (42.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y A +
Sbjct: 190 NRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVS 249
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 250 SMNLFDLGGQYLRVGKA 266
Score = 104 (41.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGV-GKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
CGK+G + V+I + Q E V K+F+E+ A A AL+ R FGG V A
Sbjct: 466 CGKFGAVNRVIIYQEKQGEEEDAEVIVKIFVEFSAASEMNKAIQALNNRWFGGRKVIAEV 525
Query: 510 YPEDKYFNKDYSA 522
Y ++++ N D SA
Sbjct: 526 YDQERFDNSDLSA 538
Score = 73 (30.8 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 35/124 (28%), Positives = 56/124 (45%)
Query: 136 VPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFF 195
+P+++ +MA + FG L PL V Q+A RVYVG + E I F
Sbjct: 58 MPNSL-QMASLTMGFG-DPLS--PLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAF 113
Query: 196 SQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVR 254
+ G + +V + H K FAFVE E A A+ ++ ++ G ++V
Sbjct: 114 APF-----GPIKSIDMSWDSVTLKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 167
Query: 255 RPTD 258
RP++
Sbjct: 168 RPSN 171
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 160 (61.4 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 33/99 (33%), Positives = 50/99 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A LA+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 231 AAALANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYG 290
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F + D A LNG ++ + + V T + S
Sbjct: 291 FITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDAS 329
Score = 79 (32.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C K+G ++++ + D+ E G V+++ A +AL GR FGG + A Y
Sbjct: 447 CNKHGGVIHIYV---DKKSAE----GNVYVKCPTIPAAMAAVSALHGRWFGGKMITAAYV 499
Query: 511 PEDKYFN 517
P Y N
Sbjct: 500 PLPTYHN 506
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 160 (61.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
Score = 79 (32.9 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C K+G ++++ + D+N + G V+++ A NAL GR F G + A Y
Sbjct: 453 CNKHGGVIHIYV---DKNSAQ----GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 505
Query: 511 PEDKY 515
P Y
Sbjct: 506 PLPTY 510
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 115 (45.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 264 AAALGPGQP-SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A +G G P SP ++AA + AI RV+VG + Y E I++ FG +
Sbjct: 73 AVTMGFGDPLSPLQSMAAQRQRALAI-----MCRVYVGSIYYELGEDTIRQAFAPFGPIK 127
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
D+ D T KG+ F Y+ P +A +N + +G + + V R + + GQ++
Sbjct: 128 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS-NIGQAQ 183
Score = 111 (44.1 bits), Expect = 3.0e-12, Sum P(3) = 3.0e-12
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 197 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 256
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 257 SMNLFDLGGQYLRVGKA 273
Score = 97 (39.2 bits), Expect = 3.0e-12, Sum P(3) = 3.0e-12
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
CGK+G VN VI ++ G E + K+F+E+ A A L+GR F G V A
Sbjct: 458 CGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAE 516
Query: 509 YYPEDKYFNKDYSA 522
Y ++++ N D SA
Sbjct: 517 VYDQERFDNSDLSA 530
Score = 74 (31.1 bits), Expect = 3.0e-12, Sum P(3) = 3.0e-12
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 148 LPFGATQLG-AFPLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIG 203
L A +G PL P+Q M Q R RVYVG + E I F+
Sbjct: 69 LQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF----- 123
Query: 204 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 124 GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 178
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 160 (61.4 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
Score = 75 (31.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFY 509
C K+G ++++ + D+N + G V+++ A NAL GR F G + A Y
Sbjct: 448 CNKHGGVIHIYV---DKNSAQ----GNVYVKCPSIAAAIAAVNALHGRWFAAGKMITAAY 500
Query: 510 YPEDKYFN 517
P Y N
Sbjct: 501 VPLPTYHN 508
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 160 (61.4 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
Score = 75 (31.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFY 509
C K+G ++++ + D+N + G V+++ A NAL GR F G + A Y
Sbjct: 448 CNKHGGVIHIYV---DKNSAQ----GNVYVKCPSIAAAIAAVNALHGRWFAAGKMITAAY 500
Query: 510 YPEDKYFN 517
P Y N
Sbjct: 501 VPLPTYHN 508
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 164 (62.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 35/99 (35%), Positives = 50/99 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +AS G GP R++VG L + TE ++ + E FG + G L+ D +TG SKGYG
Sbjct: 249 AAAMASMLQRGGAGPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYG 308
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F + D A LNG ++ + + V T S S
Sbjct: 309 FISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDAS 347
Score = 64 (27.6 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C K+G ++++ + D+N + G V+++ ++L GR F G + A Y
Sbjct: 463 CRKHGGVIHIYV---DKNSAQ----GNVYVKCPTIPVAMAVVSSLHGRWFAGKMITAAYV 515
Query: 511 PEDKYFN 517
P Y N
Sbjct: 516 PLPTYHN 522
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 112 (44.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+N + +G + + V R S GQ++
Sbjct: 147 MNSVMLGGRNIKVGRP-GSIGQAQ 169
Score = 105 (42.0 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
CGKYG VN VI ++ G E + K+F+E+ DA A AL+ R F G V A
Sbjct: 444 CGKYGA-VNRVIIYQERQGEEDDAEIIVKIFVEFSDAGEMNKAIQALNNRWFAGRKVVAE 502
Query: 509 YYPEDKYFNKDYSA 522
Y +D++ + D +A
Sbjct: 503 LYDQDRFNSSDLTA 516
Score = 105 (42.0 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A +R++V + ++ IK + E+FG + L ++ TG KG+GF Y+ P +
Sbjct: 179 ARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSL 238
Query: 351 IACAALNGLKMGDKTLTVRRA 371
A +++N +G + L V +A
Sbjct: 239 DAVSSMNLFDLGGQYLRVGKA 259
Score = 61 (26.5 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 33/116 (28%), Positives = 49/116 (42%)
Query: 142 EMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTA 201
+MA + FG L + L V Q+A RVYVG + E I F+
Sbjct: 56 QMAAVTMGFG-DPLSS--LQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF--- 109
Query: 202 IGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRP 256
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP
Sbjct: 110 --GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 162
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 111 (44.1 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 210 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 269
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 270 SMNLFDLGGQYLRVGKA 286
Score = 110 (43.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+N + +G + + V R + + GQ++
Sbjct: 174 MNSVMLGGRNIKVGRPS-NIGQAQ 196
Score = 103 (41.3 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508
CGK+G VN VI ++ G E + K+F+E+ A A AL+GR F G V A
Sbjct: 471 CGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAE 529
Query: 509 YYPEDKYFNKDYSA 522
Y ++++ N D SA
Sbjct: 530 VYDQERFDNSDLSA 543
Score = 57 (25.1 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
Q+A RVYVG + E I F+ G + +V + H K FAFV
Sbjct: 106 QRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIKSIDMSWDSVTMKH-KGFAFV 159
Query: 228 EMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
E E A A+ ++ ++ G ++V RP++
Sbjct: 160 EYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 191
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 179 (68.1 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 45/113 (39%), Positives = 61/113 (53%)
Query: 278 LAAVGLASGAIGGAEGP--DR----VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331
+A + +A+ A A P DR VFVG +PY TE Q+K++ G + F LV DR+
Sbjct: 1 MANLAVAAAAAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRE 60
Query: 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES 384
TG KGYGFC YQD A LNG + + L V A +S ++K E +S
Sbjct: 61 TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA--ASEKNKEELKS 111
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 157 (60.3 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
A L G PS N A +S I E ++VG LPY ET ++EL G++H
Sbjct: 44 APLLTGSPSTN---TASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSV 100
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
L+KD+ TG +G+GF + D A +ALN + +TL VR A
Sbjct: 101 RLMKDKHTGKRRGFGFVEMASDDL-DKAISALNDTEFQQRTLKVREA 146
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 157 (60.3 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
A L G PS N A +S I E ++VG LPY ET ++EL G++H
Sbjct: 44 APLLTGSPSTN---TASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSV 100
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
L+KD+ TG +G+GF + D A +ALN + +TL VR A
Sbjct: 101 RLMKDKHTGKRRGFGFVEMASDDL-DKAISALNDTEFQQRTLKVREA 146
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 136 (52.9 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 34/126 (26%), Positives = 62/126 (49%)
Query: 260 NPTLAAALGPGQ-PSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESF 318
+P L+ + P Q P+P++ I A R+++G + + TE Q++ + F
Sbjct: 736 HPILSQSHHPPQHPTPDVPKPNESAPPVPINEAS---RIYIGSINWNVTEDQVRSIFSQF 792
Query: 319 GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
G + L+++ DTG KG+GF ++ D A A +NG ++ +++ V R T SS +
Sbjct: 793 GRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIATMNGFELLGRSIKVGRPTKSSNNN 852
Query: 379 KTEQES 384
S
Sbjct: 853 NNNNNS 858
Score = 75 (31.5 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAI-ATF--FSQVMT-AIGGNSAGPGDAVV 214
P+ P + Q ++ R+YVG L E I ATF F + + A+G +++G
Sbjct: 574 PIPPT--LNQSTSQDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDASGKS---- 627
Query: 215 NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRP 256
K +AF+E E A+ A+ ++ + G A++V RP
Sbjct: 628 -------KGYAFIEYDNQESAAKALQSMTNYVMCGRAIKVARP 663
Score = 60 (26.2 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C ++G + +VI ++ ++ V +F + Y + C ++ L+G+ F + + A +Y
Sbjct: 972 CNEFGEIEKLVI----KSDSQSVKVYILFKDLYSGMAC---QSKLNGKYFSYHCIKAEFY 1024
Query: 511 PEDKYFNKD 519
+ FNKD
Sbjct: 1025 -DVHLFNKD 1032
Score = 42 (19.8 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 17 HKSSWVSGRSRTGERGRDRHH 37
HK+S RSR+ R R + H
Sbjct: 270 HKNSRSRSRSRSKSRDRKKSH 290
Score = 42 (19.8 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 16 RHKSSWVSGRSRTGERGRDRHHRDFKS 42
R++SS +SR+ R R H+ +S
Sbjct: 372 RNRSSRSKSKSRSRSRSSGRKHKSSRS 398
Score = 40 (19.1 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 14 GSRHKSSWVSGRSRTGERGRDRHHRDFKS 42
G +HKSS RSR+ R + +RD KS
Sbjct: 390 GRKHKSS----RSRS--RSTTKSNRDTKS 412
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 1 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFIT 60
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 61 FSDSECARRALEQLNGFELAGRPMRVGHVT 90
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 128 (50.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
CGKYG +++VVI N + G+ K+F++Y D++ AK AL GR FGGNTV A Y
Sbjct: 683 CGKYGNVIDVVIA----NFASS-GLVKIFVKYSDSMQVDRAKAALDGRFFGGNTVKAEAY 737
Query: 511 PEDKYFNKDYS 521
+ + + DY+
Sbjct: 738 DQILFDHADYT 748
Score = 100 (40.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
R++VG + + E ++ + FG + ++ D TG+ K + F Y+ P +A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 356 LNGLKMGDKTLTV 368
+NG +G + L V
Sbjct: 163 MNGQMLGGRNLKV 175
Score = 45 (20.9 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 346 PAVTDIACAALNGLKMGDKTLTVRRATASSGQS-KTEQES 384
PA +ACAA+ T V A A++G S KT ES
Sbjct: 302 PASVSVACAAI--------TAKVMAAEAAAGSSPKTPSES 333
Score = 40 (19.1 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFF 195
P+ M Q+ + RVYV + P +E + + F
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVF 227
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 257 TDYNPTLAAALGPGQPSPNLNLAAVGLASG 286
T + + A +GPG+ N+ A+ L G
Sbjct: 531 TSEDGKMLAIMGPGRGGDNVASMALALMDG 560
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 147 (56.8 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 48/183 (26%), Positives = 75/183 (40%)
Query: 205 NSAGPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNP 261
+S G V + N K+F A++E E + A+ L G GV + V+
Sbjct: 258 SSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKN 317
Query: 262 TLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 321
L A QP + GP R++VG L + TE ++ + E FG +
Sbjct: 318 RLQNAAPAFQPKSHT----------------GPMRLYVGSLHFNITEDMLRGIFEPFGKI 361
Query: 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTE 381
L+ D +TG SKGYGF Y + A LNG ++ + + V T + T
Sbjct: 362 DAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNTTS 421
Query: 382 QES 384
++
Sbjct: 422 LDT 424
Score = 61 (26.5 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 476 GKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515
G V+++ A NAL GR F G + A Y P Y
Sbjct: 532 GTVYVKCPSTTTAVLAVNALHGRWFAGRVITAAYVPVINY 571
Score = 54 (24.1 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 12 GEGSRHKSSWVSGRSRTGER-GRDRHHR 38
G GS HK RSR+G R G+ R R
Sbjct: 57 GGGSSHKKQSKRSRSRSGSRDGKSRRDR 84
Score = 47 (21.6 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 24 GRSRTGERGRDRHHRDFKSG 43
G R G+R +DR RD + G
Sbjct: 141 GGGRYGDRDKDRRSRDRRGG 160
Score = 45 (20.9 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 4 RDIRYDAVGEGSRHKSSWVS-GRSRTGERGRDRHHR----DFKSGG 44
RD D G+ RH+ R R ER RDR R D + GG
Sbjct: 98 RDRNRDG-GDRDRHRREGGDRDRERERERERDRSRRSRSRDERGGG 142
Score = 43 (20.2 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 7 RYDAVGEGSRHKSSWVSGRSRTGERG-RDRHHRD 39
R D E S H+ R R + G RDRH R+
Sbjct: 81 RRDRGNERSSHRDK-DKERDRNRDGGDRDRHRRE 113
Score = 40 (19.1 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 3 GRDIRYDAVGEGSRHKSSWVSGRSRTGERGRDRHHRDFK 41
GR + G G H + R G G H + K
Sbjct: 29 GRKRSGSSPGGGGGHDDDYAENGPRNGSGGGSSHKKQSK 67
Score = 39 (18.8 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 16 RHKSSWVSGRSRTGERGRDRHHR 38
R + S + R R+ R RDR+ R
Sbjct: 183 RKRLSPIRERKRSHSRSRDRNSR 205
Score = 39 (18.8 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 14 GSRH-KSSWVSGRSRTGERGRDRHHRDFKSGG 44
GSR KS G R+ R +D+ + GG
Sbjct: 74 GSRDGKSRRDRGNERSSHRDKDKERDRNRDGG 105
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 156 (60.0 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 35/95 (36%), Positives = 50/95 (52%)
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
LAA +A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKG
Sbjct: 23 LAA--MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKG 80
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
YGF + D A LNG ++ + + V T
Sbjct: 81 YGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 115
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 153 (58.9 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 31/80 (38%), Positives = 42/80 (52%)
Query: 300 GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359
G +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A LNG
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 360 KMGDKTLTVRRATASSGQSK 379
+ + L V A + + +
Sbjct: 62 EFSGRALRVDNAASEKNKEE 81
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 124 (48.7 bits), Expect = 2.8e-10, Sum P(4) = 2.8e-10
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 285 SGAIGGAEGPDR-VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
S +GG DR ++VG L + +E Q++++ E+FG + L D +TG KG+GF +
Sbjct: 254 STTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Query: 344 QDPAVTDIACAALNG-LKMGDKTLTVRRATASSGQSKTEQES 384
+ A ALNG L++ +T+ V + G + +S
Sbjct: 314 VQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKS 355
Score = 64 (27.6 bits), Expect = 2.8e-10, Sum P(4) = 2.8e-10
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510
C KYG + ++ + D+N G V+L + A A+ A+ R F ++A +
Sbjct: 465 CSKYGPVNHIYV---DKNSA-----GFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFM 516
Query: 511 PEDKY 515
P +Y
Sbjct: 517 PPHEY 521
Score = 56 (24.8 bits), Expect = 2.8e-10, Sum P(4) = 2.8e-10
Identities = 23/93 (24%), Positives = 38/93 (40%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
R R V+ +P A E+ + FFS+ +++ K ++E
Sbjct: 165 RDQRTVFAYQMPLKATERDVYEFFSKA------GKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA 264
V A+AL G +F G V V+ P++ LA
Sbjct: 219 VMSVPMAIALSGQLFLGQPVMVK-PSEAEKNLA 250
Score = 52 (23.4 bits), Expect = 2.8e-10, Sum P(4) = 2.8e-10
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 4 RDIRYDAVGEGSRHKSSWVSGRSRTGERGRDRHHRD 39
+D D V EGSR K S R R+ + RDR RD
Sbjct: 86 KDRERDKVREGSRDKES---DRERSSKE-RDRSDRD 117
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 111 (44.1 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 118 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 177
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 178 SMNLFDLGGQYLRVGKA 194
Score = 110 (43.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 22 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 81
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+N + +G + + V R + + GQ++
Sbjct: 82 MNSVMLGGRNIKVGRPS-NIGQAQ 104
Score = 85 (35.0 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 454 YGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511
+ + VN VI ++ G E + K+F+E+ A A AL+GR F G V A Y
Sbjct: 336 HSSXVNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQALNGRWFAGRKVVAEVYD 395
Query: 512 EDKYFNKDYSA 522
++++ N D SA
Sbjct: 396 QERFDNSDLSA 406
Score = 61 (26.5 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
L+ + Q+A RVYVG + E I F+ G + +V +
Sbjct: 6 LLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF-----GPIKSIDMSWDSVTMK 60
Query: 220 HEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 61 H-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 99
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 151 (58.2 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N A +G++ AE D VF+GGLPY TE + + +G + +LV+D+ T
Sbjct: 14 NAREAELGVSEAVSWHAEYKDSAWVFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 109
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 172 (65.6 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 38/88 (43%), Positives = 51/88 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 82 NGREFSGRALRVDNA--ASEKNKEELKS 107
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 159 (61.0 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGL Y TE ++E +GT+ D+++DR+T S+G+GF +++P A AA
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 356 LNGLKMGDKTLTVRRATASSGQS 378
+NG ++ + + V A S G+S
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGGRS 106
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 150 (57.9 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 267 LGPGQPSPNLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHG 323
L P +P+ A GA+ G++ ++FVGGLPY+ T+ +++ E FG +
Sbjct: 3 LQPAPCAPSAGFPRPPAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE 62
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
++ DR TG S+GYGF D A + AC
Sbjct: 63 AVVITDRQTGKSRGYGFVTMADRAAAERAC 92
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 172 (65.6 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 38/88 (43%), Positives = 51/88 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 170 (64.9 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 172 (65.6 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 38/88 (43%), Positives = 51/88 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 172 (65.6 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 38/88 (43%), Positives = 51/88 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 172 (65.6 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 38/88 (43%), Positives = 51/88 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 172 (65.6 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 38/88 (43%), Positives = 51/88 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 172 (65.6 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 38/88 (43%), Positives = 51/88 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 170 (64.9 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 170 (64.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 170 (64.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 170 (64.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 170 (64.9 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 38/88 (43%), Positives = 50/88 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + + L V A +S ++K E +S
Sbjct: 78 NGREFSGRALRVDNA--ASEKNKEELKS 103
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 161 (61.7 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 35/95 (36%), Positives = 51/95 (53%)
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
LAA +A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKG
Sbjct: 249 LAA--MANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKG 306
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
YGF + D A LNG ++ + + V T
Sbjct: 307 YGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 341
Score = 45 (20.9 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 2 SGRDIRYDAVGEGSRHKSSWVSGRSRTGERGR----DRHHR 38
SG A G+ S+ K S +SR +R R DRH R
Sbjct: 47 SGGTSGSSAGGDSSKKKRSRSHSKSRDRKRSRSRDRDRHRR 87
Score = 43 (20.2 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 16 RHKS-SWVSGRSRTGERGRDRHHRD 39
RH+S SW R + R RDR D
Sbjct: 100 RHRSRSW-DRRHSSESRSRDRRRED 123
Score = 40 (19.1 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 4 RDIRYDAVGEGSRHKSSWVSGRSRTGERGRDRHHR 38
RD + + RH+ S RSR+ R R R HR
Sbjct: 72 RDRKRSRSRDRDRHRRR--SSRSRS--RDRQRRHR 102
Score = 37 (18.1 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 208 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 251
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 100 (40.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + + E I+ FG + ++ D T KG+ F Y+ P +A
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 356 LNGLKMGDKTLTVRR 370
+NG MG + + V R
Sbjct: 191 MNGALMGGRNIKVGR 205
Score = 98 (39.6 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+ +R++V + +E IK + E+FG + L + KGYGF Y + D
Sbjct: 223 AKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMD 282
Query: 351 IACAALNGLKMGDKTLTVRRA 371
A A++N +G + L V R+
Sbjct: 283 EAIASMNLFDLGGQLLRVGRS 303
Score = 87 (35.7 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 24/75 (32%), Positives = 33/75 (44%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPG----VGKVFLEYYDAVGCATAKNALSGRKFGGNTVN 506
C K+GT+ V+I Q E + K+F+E+ K AL GR FGG V
Sbjct: 562 CSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVV 621
Query: 507 AFYYPEDKYFNKDYS 521
A Y + + D S
Sbjct: 622 AELYDQGIFDQGDLS 636
Score = 72 (30.4 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 30/96 (31%), Positives = 42/96 (43%)
Query: 164 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
QV QQA RVYVG + E I F+ N + D + H K
Sbjct: 119 QVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSW--DPITQ---KH-KG 172
Query: 224 FAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
FAFVE E A A+ ++G + G ++V RP++
Sbjct: 173 FAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSN 208
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 143 (55.4 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T+ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 157 (60.3 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
LAA +A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKG
Sbjct: 239 LAA--MANNLQKGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKG 296
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
YGF + D A LNG ++ + + + T
Sbjct: 297 YGFITFSDSECARRALEQLNGFELAGRPMRIGHVT 331
Score = 46 (21.3 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 17 HKSSWVSGRSRTGERGRDRHHR 38
H S SR+ +R RDRH R
Sbjct: 70 HSKSRDRKHSRSRDRDRDRHRR 91
Score = 42 (19.8 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 10 AVGEGSRHKSSWVSGRSRTGERGRDRHH 37
A GE S+ K RSR+ + RDR H
Sbjct: 57 ASGEASKKK------RSRSHSKSRDRKH 78
Score = 38 (18.4 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 25/104 (24%), Positives = 40/104 (38%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV ++ + R AR V+ L + + FFS A+G + +
Sbjct: 145 PVDNLSPEE-RDARTVFCMQLAARIRPRDLEDFFS----AVG--KVRDVRIISDRNSRRS 197
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 198 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 241
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 27 RTGERGRDRHHRDFKS 42
R G R DR H + +S
Sbjct: 91 RRGSRSXDRRHSESRS 106
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 164 (62.8 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 33/86 (38%), Positives = 48/86 (55%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQ 382
NG ++G +TL V A + + +Q
Sbjct: 78 NGYEIGGRTLRVDNACTEKSRMEMQQ 103
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 156 (60.0 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 35/95 (36%), Positives = 50/95 (52%)
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
LAA +A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKG
Sbjct: 248 LAA--MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKG 305
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
YGF + D A LNG ++ + + V T
Sbjct: 306 YGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 340
Score = 47 (21.6 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 4 RDIRYDAVGEGSRHKS-SWVSGRSRTGERGRDRHHR 38
R+ R + G RH+S SW R R G R R HR
Sbjct: 87 RNSRSRSPGRQCRHRSRSW--DR-RHGSESRSRDHR 119
Score = 44 (20.5 bits), Expect = 9.0e-09, Sum P(3) = 9.0e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 11 VGEGSRHKSSWVSGRSRTGERGRDRHHRD 39
+GE S+ K S +SR +R R R RD
Sbjct: 55 IGETSKKKRSRSHNKSRDRKRSRSRD-RD 82
Score = 38 (18.4 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 25/104 (24%), Positives = 40/104 (38%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV ++ + R AR V+ L + + FFS A+G + +
Sbjct: 154 PVDNLSPEE-RDARTVFCMQLAARIRPRDLEDFFS----AVG--KVRDVRIISDRNSRRS 206
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 250
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 156 (60.0 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 35/95 (36%), Positives = 50/95 (52%)
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
LAA +A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKG
Sbjct: 78 LAA--MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKG 135
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
YGF + D A LNG ++ + + V T
Sbjct: 136 YGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 170
Score = 37 (18.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 37 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 80
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 140 (54.3 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV G PY TE + + +G + +L++D TG SKG+ F Y+D T +A L
Sbjct: 36 IFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNL 95
Query: 357 NGLKMGDKTLTV 368
NG+K+ D+TL V
Sbjct: 96 NGIKILDRTLRV 107
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 140 (54.3 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 101 NGLRLQTKTIKVSYARPSS 119
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 160 (61.4 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 35/103 (33%), Positives = 52/103 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 152 (58.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 267 LGPGQPSPNLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHG 323
L P +P+ + A GA+ G++ ++FVGGLPY+ T+ +++ E FG +
Sbjct: 3 LQPAPCAPSAGFSRPPAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE 62
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
++ DR TG S+GYGF D A + AC
Sbjct: 63 AVVITDRQTGKSRGYGFVTMADRAAAERAC 92
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 142 (55.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 14 PTSNTSNGPS--SNNRNCPSP-MQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 69
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 70 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 124
Score = 57 (25.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 289 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 343
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 143 (55.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 42/128 (32%), Positives = 60/128 (46%)
Query: 249 VAVRVRRPTDYN-PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFT 307
+ + P N PT + GP S N N + + +GA + + V LP T
Sbjct: 7 IIISTMEPQVSNGPTSNTSNGPS--SNNRNCPSP-MQTGAATD-DSKTNLIVNYLPQNMT 62
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ + + L S G + LV+D+ TG S GYGF Y DP + A LNGL++ KT+
Sbjct: 63 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 122
Query: 368 VRRATASS 375
V A SS
Sbjct: 123 VSYARPSS 130
Score = 57 (25.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 322 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 376
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 142 (55.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 16 PTSNTSNGPS--SNNRNCPSP-MQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Score = 57 (25.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 304 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 358
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 142 (55.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 16 PTSNTSNGPS--SNNRNCPSP-MQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Score = 57 (25.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 304 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 358
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 142 (55.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 21 PTSNTSNGPS--SNNRNCPSP-MQTGATTD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 76
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 77 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 131
Score = 57 (25.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 309 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 363
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 142 (55.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 9 PTSNTSNGPS--SNNRNCPSP-MQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 64
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Score = 57 (25.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 311 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 365
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 142 (55.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 9 PTSNTSNGPS--SNNRNCPSP-MQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 64
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Score = 57 (25.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 311 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 365
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 159 (61.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 35/88 (39%), Positives = 46/88 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q++E+ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
++ + L V A G KT +S
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTRDQS 98
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 151 (58.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 34/101 (33%), Positives = 52/101 (51%)
Query: 267 LGPGQPSPNLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHG 323
L P +P+ A GA+ G++ ++FVGGLPY+ T+ +++ E FG +
Sbjct: 3 LQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE 62
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364
++ DR TG S+GYGF D A + AC N + G K
Sbjct: 63 AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 103
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 142 (55.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 16 PTSNTSNGPS--SNNRNCPSP-MQTGATTD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Score = 57 (25.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 318 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 372
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 142 (55.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 16 PTSNTSNGPS--SNNRNCPSP-MQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Score = 57 (25.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 318 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 372
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 142 (55.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 32 PTSNTSNGPS--SNNRNCPSP-MQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 87
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 88 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 142
Score = 57 (25.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 320 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 374
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 142 (55.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 21 PTSNTSNGPS--SNNRNCPSP-MQTGATTD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 76
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 77 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 131
Score = 57 (25.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 323 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 377
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 142 (55.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 40/115 (34%), Positives = 56/115 (48%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PT + GP S N N + + +GA + + V LP T+ + + L S G
Sbjct: 21 PTSNTSNGPS--SNNRNCPSP-MQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGE 76
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 77 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 131
Score = 57 (25.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 323 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 377
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 153 (58.9 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
LAA +A+ G+ GP R++VG L TE ++ +LE FG + L+KD +TG SKG
Sbjct: 263 LAA--MANNLQKGSGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKG 320
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
YGF + D A LNG ++ + + + T
Sbjct: 321 YGFITFSDSECARRALEQLNGFELAGRPMRIGHVT 355
Score = 46 (21.3 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 12 GEGSRHKSSWVSGRSRTGERGR----DRHHR 38
GE S+ K S +SR +R R DRH R
Sbjct: 71 GEASKKKRSRSHSKSRERKRSRSRDRDRHRR 101
Score = 38 (18.4 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 25/104 (24%), Positives = 40/104 (38%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV ++ + R AR V+ L + + FFS A+G + +
Sbjct: 169 PVDNLSPEE-RDARTVFCMQLAARIRPRDLEDFFS----AVG--KVRDVRIISDRNSRRS 221
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 222 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA 265
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 150 (57.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 267 LGPGQPSPNLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHG 323
L P +P+ A GA+ G++ ++FVGGLPY+ T+ +++ E FG +
Sbjct: 3 LQPAPCAPSAGFPRPPAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE 62
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
++ DR TG S+GYGF D A + AC
Sbjct: 63 AVVITDRQTGKSRGYGFVTMADRAAAERAC 92
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 142 (55.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 39/115 (33%), Positives = 53/115 (46%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
P A A GP S N + +G + + V LP T+ + + L S G
Sbjct: 58 PNSATANGP---SSNSRSCPSPMQTGG-SNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 113
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 114 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 168
Score = 57 (25.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 346 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 400
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 140 (54.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 36/104 (34%), Positives = 50/104 (48%)
Query: 272 PSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331
PS N + +GA + + V LP T+ + + L S G + LV+D+
Sbjct: 29 PSSNSRNCPSPMQTGAATD-DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 87
Query: 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
TG S GYGF Y DP + A LNGL++ KT+ V A SS
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 131
Score = 100 (40.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++V GLP T+ ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQ 382
NG K T + A++ KT Q
Sbjct: 199 NGQKPSGATEPITVKFANNPSQKTSQ 224
Score = 57 (25.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + YD A A +L+G + G + +
Sbjct: 309 GPFGAVNNVKVIR-DFNTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLGDRVLQVSF 363
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 134 (52.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/87 (36%), Positives = 44/87 (50%)
Query: 293 GPDR-VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
GP ++VG LPY E ++K L FG ++ LV+DR TG KG+GF V A
Sbjct: 61 GPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGF-VEMSEAGAQK 119
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQS 378
A LN ++TL VR A ++
Sbjct: 120 AMVKLNDFNFQERTLKVREAKTQDSEA 146
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 134 (52.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/87 (36%), Positives = 44/87 (50%)
Query: 293 GPDR-VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
GP ++VG LPY E ++K L FG ++ LV+DR TG KG+GF V A
Sbjct: 61 GPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGF-VEMSEAGAQK 119
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQS 378
A LN ++TL VR A ++
Sbjct: 120 AMVKLNDFNFQERTLKVREAKTQDSEA 146
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 43/109 (39%), Positives = 56/109 (51%)
Query: 268 GPGQPS-PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
GP P+ PN L +G +GA ++ + V LP T+ + K L S G + L
Sbjct: 16 GPAGPALPNGPL--LG-TNGATDDSK--TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
V+D+ TG S GYGF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
Score = 113 (44.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 38/133 (28%), Positives = 61/133 (45%)
Query: 241 LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVG 300
LD ++ +A V+ P +L A P LA VGL+ GA G +FV
Sbjct: 239 LDNLL--NMAYGVKSPL----SLIARFSPIAIDGMSGLAGVGLSGGAAGAGWC---IFVY 289
Query: 301 GLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK 360
L E+ + +L FG + +++D T KG+GF + +A A+LNG +
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 349
Query: 361 MGDKTLTVRRATA 373
+G++ L V T+
Sbjct: 350 LGERVLQVSFKTS 362
Score = 43 (20.2 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 177 VYVGGLPPLANEQAIATFFSQ 197
+YV GLP +++ + FSQ
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQ 147
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 43/109 (39%), Positives = 56/109 (51%)
Query: 268 GPGQPS-PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
GP P+ PN L +G +GA ++ + V LP T+ + K L S G + L
Sbjct: 16 GPAGPALPNGPL--LG-TNGATDDSK--TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
V+D+ TG S GYGF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
Score = 113 (44.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 38/133 (28%), Positives = 61/133 (45%)
Query: 241 LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVG 300
LD ++ +A V+ P +L A P LA VGL+ GA G +FV
Sbjct: 239 LDNLL--NMAYGVKSPL----SLIARFSPIAIDGMSGLAGVGLSGGAAGAGWC---IFVY 289
Query: 301 GLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK 360
L E+ + +L FG + +++D T KG+GF + +A A+LNG +
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 349
Query: 361 MGDKTLTVRRATA 373
+G++ L V T+
Sbjct: 350 LGERVLQVSFKTS 362
Score = 43 (20.2 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 177 VYVGGLPPLANEQAIATFFSQ 197
+YV GLP +++ + FSQ
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQ 147
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 43/109 (39%), Positives = 56/109 (51%)
Query: 268 GPGQPS-PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
GP P+ PN L +G +GA ++ + V LP T+ + K L S G + L
Sbjct: 16 GPAGPALPNGPL--LG-TNGATDDSK--TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
V+D+ TG S GYGF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
Score = 113 (44.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 38/133 (28%), Positives = 61/133 (45%)
Query: 241 LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVG 300
LD ++ +A V+ P +L A P LA VGL+ GA G +FV
Sbjct: 239 LDNLL--NMAYGVKSPL----SLIARFSPIAIDGMSGLAGVGLSGGAAGAGWC---IFVY 289
Query: 301 GLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK 360
L E+ + +L FG + +++D T KG+GF + +A A+LNG +
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 349
Query: 361 MGDKTLTVRRATA 373
+G++ L V T+
Sbjct: 350 LGERVLQVSFKTS 362
Score = 43 (20.2 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 177 VYVGGLPPLANEQAIATFFSQ 197
+YV GLP +++ + FSQ
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQ 147
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 43/109 (39%), Positives = 56/109 (51%)
Query: 268 GPGQPS-PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
GP P+ PN L +G +GA ++ + V LP T+ + K L S G + L
Sbjct: 16 GPAGPALPNGPL--LG-TNGATDDSK--TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
V+D+ TG S GYGF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
Score = 113 (44.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 38/133 (28%), Positives = 61/133 (45%)
Query: 241 LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVG 300
LD ++ +A V+ P +L A P LA VGL+ GA G +FV
Sbjct: 239 LDNLL--NMAYGVKSPL----SLIARFSPIAIDGMSGLAGVGLSGGAAGAGWC---IFVY 289
Query: 301 GLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK 360
L E+ + +L FG + +++D T KG+GF + +A A+LNG +
Sbjct: 290 NLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 349
Query: 361 MGDKTLTVRRATA 373
+G++ L V T+
Sbjct: 350 LGERVLQVSFKTS 362
Score = 43 (20.2 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 177 VYVGGLPPLANEQAIATFFSQ 197
+YV GLP +++ + FSQ
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQ 147
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 43/109 (39%), Positives = 56/109 (51%)
Query: 268 GPGQPS-PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
GP P+ PN L +G +GA ++ + V LP T+ + K L S G + L
Sbjct: 16 GPAGPALPNGPL--LG-TNGATDDSK--TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
V+D+ TG S GYGF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 43/109 (39%), Positives = 56/109 (51%)
Query: 268 GPGQPS-PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
GP P+ PN L +G +GA ++ + V LP T+ + K L S G + L
Sbjct: 16 GPAGPALPNGPL--LG-TNGATDDSK--TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
V+D+ TG S GYGF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
Score = 112 (44.5 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
LA VGL+ GA G +FV L E+ + +L FG + +++D T KG
Sbjct: 271 LAGVGLSGGAAGAGWC---IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKG 327
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+GF + +A A+LNG ++G++ L V T+
Sbjct: 328 FGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 363
Score = 43 (20.2 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 177 VYVGGLPPLANEQAIATFFSQ 197
+YV GLP +++ + FSQ
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQ 147
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 125 (49.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
G + V LP T+ +++ L S G + L++D+ G+S GYGF Y + + A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 353 CAALNGLKMGDKTLTVRRATASSGQSK 379
LNGL++ KT+ V A SS K
Sbjct: 78 INTLNGLRLQSKTIKVSVARPSSESIK 104
Score = 89 (36.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+++ GLP T+ ++++ FG + ++ D+ TG S+G F + + + A A+
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 357 NGLKM--GDKTLTVRRATASSGQSK 379
NG K + +TV+ A A+ Q+K
Sbjct: 168 NGHKPPGSSEPITVKFA-ANPNQNK 191
Score = 69 (29.3 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G +G + NV + R D N + G G V + Y+ A A +L+G + G T+ F+
Sbjct: 265 GPFGAVTNVKVIR-DFNTNKCKGFGFVTMTNYEEAAMAIA--SLNGYRLGDKTLQVFF 319
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 147 (56.8 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T+ +++ E FG + ++ DR TG S+GYGF D A D AC
Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 93 PNPIIDGRK 101
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 147 (56.8 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T+ +++ E FG + ++ DR TG S+GYGF D A D AC
Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 93 PNPIIDGRK 101
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 148 (57.2 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 49/199 (24%), Positives = 81/199 (40%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEA 235
+++VG LP + +A F GN + + + + F FV M +V E
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESA-----GN-VEMVEVIYDKITGRSRGFGFVTMSSVSEV 145
Query: 236 -SNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP 294
+ A +G +G +RV P G P + + G G GA
Sbjct: 146 EAAAQQFNGYELDGRPLRVNAGPP-PPKREDGFSRG-PRSSFGSSGSGYGGGGGSGAGSG 203
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+RV+VG L + + ++ L G + ++ DRD+G SKG+GF Y A
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 355 ALNGLKMGDKTLTVRRATA 373
+L+G + + + V A A
Sbjct: 264 SLDGADLDGRQIRVSEAEA 282
>TAIR|locus:1005716652 [details] [associations]
symbol:AT2G33435 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00541152
RefSeq:NP_850209.1 UniGene:At.37925 ProteinModelPortal:F4IVU7
SMR:F4IVU7 PRIDE:F4IVU7 EnsemblPlants:AT2G33435.1 GeneID:817908
KEGG:ath:AT2G33435 OMA:KEDHVGA Uniprot:F4IVU7
Length = 979
Score = 165 (63.1 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 35/103 (33%), Positives = 58/103 (56%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
V ++TR RR+Y +P A+E+++ F+ M + G N + ++ IN EK
Sbjct: 868 VQLTESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQ 927
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAAL 267
A VE T ++AS A++LDG F G +++RRP DY T +++
Sbjct: 928 ALVEFLTPQDASAALSLDGCSFAGSNLKIRRPKDYVRTTVSSI 970
Score = 37 (18.1 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 25 RSRTGERGRDRHHR 38
RSR+ + G+DR R
Sbjct: 702 RSRSRDHGQDRQKR 715
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 130 (50.8 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGL + E ++++ +G + +VKDR+T S+G+GF +++P A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+NG + + + V +A SSG +
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSGDRR 89
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 130 (50.8 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++VG LPY E+ +KEL FG + L+KD+ TG +G+GF V + A AL
Sbjct: 66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIA-ASQAQTAIDAL 124
Query: 357 NGLKMGDKTLTVRRAT-ASSGQSKTEQE 383
N + +TL VR A S + EQ+
Sbjct: 125 NEKEYMQRTLKVRIANDPKSDEEMAEQD 152
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 130 (50.8 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++VG LPY E+ +KEL FG + L+KD+ TG +G+GF V + A AL
Sbjct: 66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIA-ASQAQTAIDAL 124
Query: 357 NGLKMGDKTLTVRRAT-ASSGQSKTEQE 383
N + +TL VR A S + EQ+
Sbjct: 125 NEKEYMQRTLKVRIANDPKSDEEMAEQD 152
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 142 (55.0 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>POMBASE|SPAC644.16 [details] [associations]
symbol:SPAC644.16 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
Length = 422
Score = 151 (58.2 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
V+VG +PY E Q+ ++ + G + F LV D ++G KGYGFC Y DPA A L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 357 NGLKMGDKTLTVRRATA 373
N G + L V TA
Sbjct: 67 NNYDAGTRRLRVDFPTA 83
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 143 (55.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D + D AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 142 (55.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 142 (55.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 142 (55.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 38/115 (33%), Positives = 58/115 (50%)
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
P+ ++ GP S N + V + +G+ + + V LP T+ ++K L S G
Sbjct: 38 PSCTSSNGPNSVS-NTCTSPVEMPNGS---EDSKTNLIVNYLPQNMTQEELKSLFGSIGE 93
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ LV+D+ TG S GYGF Y +P + A LNGL++ KT+ V A SS
Sbjct: 94 IESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSS 148
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 142 (55.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL + E +++ SFG + +VKDR+T S+G+GF + +P +A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 356 LNGLKMGDKTLTVRRATASS 375
+NG + + + V A S+
Sbjct: 67 MNGESLDGRQIRVDHAGKSA 86
>POMBASE|SPBC3B9.11c [details] [associations]
symbol:ctf1 "mRNA cleavage and polyadenylation
specificity factor complex subunit Ctf1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC3B9.11c
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0006378 GenomeReviews:CU329671_GR GO:GO:0003723
eggNOG:COG0724 GO:GO:0005847 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 PIR:T40350 RefSeq:NP_596669.1
ProteinModelPortal:O43040 STRING:O43040 EnsemblFungi:SPBC3B9.11c.1
GeneID:2541018 KEGG:spo:SPBC3B9.11c OMA:QLAYAIF OrthoDB:EOG4GQTF6
NextBio:20802132 Uniprot:O43040
Length = 363
Score = 148 (57.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY +E Q+ E+ G + F LV D +TG+ KGYGFC + D T +A L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 357 NGLKMGDKTLTV 368
N ++G + + V
Sbjct: 69 NNSELGPRKIRV 80
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 127 (49.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 33/120 (27%), Positives = 50/120 (41%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
R++VG + + E ++ + E FG L L KD +TG S+GYGF ++DP A
Sbjct: 274 RLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREALEK 332
Query: 356 LNGLKMGDKTLTVRRATASSGQSKTEQESXXXXXXXXXXXXKMALQTSGMNTLGGGMSLF 415
+NG +G + + V T Q + M + G GG S F
Sbjct: 333 MNGYDLGGRAIRVGLGNDKFTPENT-QRTQSQSANQSNFQGSMFSGSGGRGVQAGGTSNF 391
Score = 58 (25.5 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 453 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNA 507
KYG +V++ + D N G ++L++ G A L+GR FGG + A
Sbjct: 488 KYGHVVHIAL---DPNSQ-----GDIYLKFDRVQGGENAIKGLNGRFFGGRQITA 534
Score = 49 (22.3 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 14 GSRHKSSWVSGRSRTGERGR---DRHHRDFKSGG 44
GS H+S S RSR +R R DRH D++S G
Sbjct: 77 GS-HRSRKRS-RSRDSDRRRARRDRHGDDYRSNG 108
Score = 41 (19.5 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 23 SGRSRTGERGRDRHHR 38
SGRSR ER +R R
Sbjct: 133 SGRSRRDERDEERRPR 148
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 127 (49.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGL ++ T+ ++E +GT+ +VKDRDT S+G+GF + D A A
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 356 LNGLKMGDKTLTVRRAT 372
+N + + + V +A+
Sbjct: 63 MNNQEFDGRIIRVDKAS 79
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 127 (49.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL + E +++ SFG + +VKDR+T S+G+GF + DP A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 356 LNGLKMGDKTLTVRRATASS 375
+NG + + + V A S+
Sbjct: 67 MNGESLDGRQIRVDHAGKSA 86
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 127 (49.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL + TE ++++ +G + +VKDR++ S+G+GF +++P A A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+NG + + + V +A SS +
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSNDRR 90
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 147 (56.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 40/114 (35%), Positives = 54/114 (47%)
Query: 262 TLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 321
T+ + G +L V +GA ++ + V LP T+ + K L S G +
Sbjct: 7 TMETQVSNGPSGTSLPNGPVISTNGATDDSK--TNLIVNYLPQNMTQEEFKSLFGSIGEI 64
Query: 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
LV+D+ TG S GYGF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 65 ESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSS 118
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 113 (44.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL E + E FG + +++ D+DTG +G+GF ++D D A
Sbjct: 100 KIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVL 159
Query: 356 ----LNGLKMG-DKTLTVRRATASSG 376
+NG K+ K LT + A+ G
Sbjct: 160 KFHMINGHKVEVKKALTKQEIQAAGG 185
Score = 75 (31.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/82 (31%), Positives = 37/82 (45%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV--NVYINHEKKFAFVEMRTVE 233
+++VGGL + ++F Q GN D VV N + + F FV T E
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQF-----GNLT---DCVVVQNDQLQRSRCFGFVTYSTSE 60
Query: 234 EASNAMALDGIIFEGVAVRVRR 255
EA AMA + +G V V+R
Sbjct: 61 EADAAMAARPHVVDGKNVEVKR 82
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 142 (55.0 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T+ +++ E+FG + ++ DR TG S+GYGF D + + AC
Sbjct: 26 KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKD 85
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 86 PNPIIDGRK 94
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 126 (49.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+ P ++F+GGL E ++ + +G + L+KDR+T S+G+ F ++ PA
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 351 IACAALNGLKMGDKTLTVRRATASS 375
A +NG + K + V +AT S
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPS 88
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 141 (54.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T+ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 141 (54.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T+ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 141 (54.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T+ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 141 (54.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T+ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 145 (56.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVGGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 288 IGGAEGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345
+G E P+ ++FVG LPY + L E GT+ +++ +RDT S+G+GF
Sbjct: 104 VGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMST 163
Query: 346 PAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQE 383
+ A N ++ + LTV RA A G S+ E++
Sbjct: 164 VEEAEKAVEKFNSFEVNGRRLTVNRA-APRG-SRPERQ 199
Score = 111 (44.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
R++VG LP+ +++ L G + +V DR+TG S+G+GF + ++A AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 356 LNGLKMGDKTLTVRRA 371
L+G + + + V A
Sbjct: 268 LDGQNLEGRAIKVNVA 283
Score = 75 (31.5 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEA 235
+++VG LP + QA+A F Q T + + N + + F FV M TVEEA
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTV------EISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 236 SNAM 239
A+
Sbjct: 168 EKAV 171
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 116 (45.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 41/154 (26%), Positives = 71/154 (46%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLNLAA 280
K A+VE T E A+A +G++ + ++++ + AA QP PN
Sbjct: 529 KGVAYVEFYTQEAVIKALAANGMMLKNRPIKIQS-SQAEKNRAAKAAKHQPIDPN----D 583
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
+ L IGG GP + + TE ++K+L FG + ++ +D TG SKG+GF
Sbjct: 584 IPLKL-YIGGLLGP----LSNI----TEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGF 634
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
+ + A +NG+++ + + V A S
Sbjct: 635 IQFHKASEAIEALTVMNGMEVAGREIKVGYAQDS 668
Score = 83 (34.3 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGV-GKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
C KYG +VN+ + +T + GK++++Y + + L+GR FGG+ +NA++
Sbjct: 800 CSKYGKVVNIWL--------DTKNIDGKIYIKYSNNDESLKSFQFLNGRYFGGSLINAYF 851
Query: 510 YPED 513
D
Sbjct: 852 ISND 855
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 116 (45.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 41/154 (26%), Positives = 71/154 (46%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLNLAA 280
K A+VE T E A+A +G++ + ++++ + AA QP PN
Sbjct: 529 KGVAYVEFYTQEAVIKALAANGMMLKNRPIKIQS-SQAEKNRAAKAAKHQPIDPN----D 583
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
+ L IGG GP + + TE ++K+L FG + ++ +D TG SKG+GF
Sbjct: 584 IPLKL-YIGGLLGP----LSNI----TEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGF 634
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
+ + A +NG+++ + + V A S
Sbjct: 635 IQFHKASEAIEALTVMNGMEVAGREIKVGYAQDS 668
Score = 83 (34.3 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 451 CGKYGTLVNVVIPRPDQNGGETPGV-GKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
C KYG +VN+ + +T + GK++++Y + + L+GR FGG+ +NA++
Sbjct: 800 CSKYGKVVNIWL--------DTKNIDGKIYIKYSNNDESLKSFQFLNGRYFGGSLINAYF 851
Query: 510 YPED 513
D
Sbjct: 852 ISND 855
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 141 (54.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 291 AEGPD-RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+E P+ R F+GGL + ++ +++ E +G L +V D+ +G S+G+GF + +
Sbjct: 2 SEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAM 61
Query: 350 DIACAALNGLKMGDKTLTVRRATASSG 376
D A AA+NG+ + +T+TV +A G
Sbjct: 62 DEAIAAMNGMDLDGRTITVDKAQPHQG 88
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T+ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 30 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 89
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 90 PNPIIDGRK 98
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 124 (48.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL + E +++ SFG + +VKDR+T S+G+GF + +P A A
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+NG + + + V A S+ S+
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSR 90
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 124 (48.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL + E +++ SFG + +VKDR+T S+G+GF + +P A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+NG + + + V A S+ S+
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSR 90
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 145 (56.1 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 56/194 (28%), Positives = 85/194 (43%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV--NVYINHEKKFA 225
++ H R++++GGL + + FFSQ G A DAVV + NH + F
Sbjct: 25 EEGYEHLRKIFIGGLSTQTTVETLRGFFSQF-----GIVA---DAVVLRDPVSNHSRGFG 76
Query: 226 FV---EMRTVEEASNAM--ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
FV + ++VE A +D I E R+ D+ G G S
Sbjct: 77 FVTYVDPKSVEIVQRARPHTIDNKIVETKHALPRQ--DFKR------GGGVGS------V 122
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
VG + G G R+F+GGL Y E ++E FG + L+ DR+TG + +GF
Sbjct: 123 VG-SFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGF 181
Query: 341 CVYQDPAVTDIACA 354
+ DP+ + A A
Sbjct: 182 LEFVDPSSAEKALA 195
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 123 (48.4 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
++ D+++VG LPY+ E + + FG + +V++ TG SKGY F Y P
Sbjct: 40 SDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAV 99
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQ 377
A A +G + ++L VR A + Q
Sbjct: 100 KALDA-HGKDLQGRSLVVRIAKSREQQ 125
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 123 (48.4 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
++ D+++VG LPY+ E + + FG + +V++ TG SKGY F Y P
Sbjct: 40 SDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAV 99
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQ 377
A A +G + ++L VR A + Q
Sbjct: 100 KALDA-HGKDLQGRSLVVRIAKSREQQ 125
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 139 (54.0 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D + + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 141 (54.7 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
R+FVGGL + TE Q++ + +G + ++ RDTG +G+GF + D D A
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 356 LNGLKMGDKTLTVRRATASSGQSKTEQ 382
++G ++G+K ++V +A G +Q
Sbjct: 73 MHGRELGNKVISVNKAEPKVGGEDVDQ 99
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 142 (55.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 142 (55.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 96
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 97 NGIKIKGRTIRV 108
>UNIPROTKB|Q3SZM1 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9913 "Bos taurus" [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794
GO:GO:0010923 EMBL:BC102791 IPI:IPI00706135 RefSeq:NP_001029526.1
UniGene:Bt.53167 HSSP:Q9BYG3 ProteinModelPortal:Q3SZM1 SMR:Q3SZM1
STRING:Q3SZM1 Ensembl:ENSBTAT00000031564 GeneID:509598
KEGG:bta:509598 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 InParanoid:Q3SZM1 KO:K14838 OMA:QVRKRIT
OrthoDB:EOG4MKNGX NextBio:20869038 InterPro:IPR021043 Pfam:PF12196
Uniprot:Q3SZM1
Length = 296
Score = 141 (54.7 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
P ++VG LP ETQI+ FGT+ F L + + TGNSKGYGF ++ V IA
Sbjct: 44 PGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAA 103
Query: 354 AALNGLKMGDKTL 366
+N G++ L
Sbjct: 104 ETMNNYLFGERLL 116
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 142 (55.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 96
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 97 NGIKIKGRTIRV 108
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 142 (55.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 115 (45.5 bits), Expect = 0.00066, P = 0.00066
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 264 AAALGPGQP-SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A +G G P SP ++AA + AI RV+VG + Y E I++ FG +
Sbjct: 100 AVTMGFGDPLSPLQSMAAQRQRALAI-----MCRVYVGSIYYELGEDTIRQAFAPFGPIK 154
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
D+ D T KG+ F Y+ P +A +N + +G + + V R + + GQ++
Sbjct: 155 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS-NIGQAQ 210
Score = 111 (44.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 224 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 283
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 284 SMNLFDLGGQYLRVGKA 300
Score = 74 (31.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 148 LPFGATQLG-AFPLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIG 203
L A +G PL P+Q M Q R RVYVG + E I F+
Sbjct: 96 LQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF----- 150
Query: 204 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 151 GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 205
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 101 (40.6 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFD-LVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+F+G L E + + +FG + +++D DTGNS+G+GF Y +D A +
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 356 LNGLKMGDKTLTVRRA 371
+ G + ++ +TV A
Sbjct: 174 MTGQYLSNRQITVSYA 189
Score = 86 (35.3 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 31/104 (29%), Positives = 50/104 (48%)
Query: 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEAS 236
VYVGGL +E+ + F Q + N P D V N++ N + F+E R+ E+A
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVV--NVYVPKDRVTNLHQN----YGFIEYRSEEDAD 80
Query: 237 NAM-ALDGIIFEGVAVRVRRPTDYNPTL--AAALGPGQPSPNLN 277
A+ L+ I G +RV + + +L A L G P+++
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVD 124
>UNIPROTKB|G4MTM5 [details] [associations]
symbol:MGG_12370 "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM001232
KO:K14838 RefSeq:XP_003715390.1 ProteinModelPortal:G4MTM5
EnsemblFungi:MGG_12370T0 GeneID:2683169 KEGG:mgr:MGG_12370
Uniprot:G4MTM5
Length = 378
Score = 143 (55.4 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
S G ++GP +++G +PY F E +I++ L FGT+ L +++ TG SKGY F +Q
Sbjct: 158 SAQAGSSDGPRVIYIGHIPYGFFEHEIRQYLSQFGTITNLRLSRNKKTGASKGYAFVEFQ 217
Query: 345 DPAVTDIACAALNGLKMGDKTLTVR 369
D + I ++ + + L V+
Sbjct: 218 DASTAAIVAKTMDAYLLFGRILKVK 242
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 142 (55.0 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 122 (48.0 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL + E +++ SFG + +VKDR+T S+G+GF + +P A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 356 LNGLKMGDKTLTVRRATASS 375
+NG + + + V A S+
Sbjct: 67 MNGESLDGRQIRVDHAGKSA 86
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 122 (48.0 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL + E +++ SFG + +VKDR+T S+G+GF + +P A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 356 LNGLKMGDKTLTVRRATASS 375
+NG + + + V A S+
Sbjct: 67 MNGESLDGRQIRVDHAGKSA 86
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 142 (55.0 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 135 (52.6 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 37/118 (31%), Positives = 60/118 (50%)
Query: 268 GPGQPSPN-LNLAAVGLASGA-IGGAE----GPD--RVFVGGLPYYFTETQIKELLESFG 319
G G P N +N G+ G +G + GP +FV +P YF++ + L + +G
Sbjct: 368 GMGGPMGNGMNNGMGGMNQGGPMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYG 427
Query: 320 TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR-RATASSG 376
+ + D++TG SKG+GF Y +PA ++A + L+G M K L V + T+ G
Sbjct: 428 IVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNLHGQMMAGKKLKVSLKQTSGQG 485
Score = 52 (23.4 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEA 235
+++VG +P NE+ I F+ + S + N N + AFV + + EEA
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANI---ESVS---LIKNKTTNEPQGCAFVSVPSREEA 57
Query: 236 SNAM 239
A+
Sbjct: 58 DRAI 61
Score = 43 (20.2 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 25/94 (26%), Positives = 38/94 (40%)
Query: 156 GAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQ--VMTAI----GGNSAGP 209
G + V+ + + A +++VG LP E+ I F V+ I G NS
Sbjct: 72 GVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESK 131
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDG 243
G + + N E A + T+ N M LDG
Sbjct: 132 GCGFIK-FDNRES--ALSAIATL----NGMKLDG 158
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 137 (53.3 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
AA+G S + + L+ G+ G P ++FVGGL + + ++KE FGT+
Sbjct: 174 AAMGGSNKSGSSGRSTPSLSGGS-GSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDV 232
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTD----IACAALNGLKMGDKTLTVRRATASSGQSK 379
++KD T S+G+GF +Q+P + + L+G K+ K T + + ++K
Sbjct: 233 LIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKTK 291
Score = 53 (23.7 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 244 IIFEGVAVRVRRPTDYN--PTLAAALGPGQPSPNL 276
++FE AV + P YN P L AA PNL
Sbjct: 1 MLFENPAVAAKLPFPYNVPPPLQAAAAAAAAVPNL 35
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 115 (45.5 bits), Expect = 0.00077, P = 0.00077
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 264 AAALGPGQP-SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A +G G P SP ++AA + AI RV+VG + Y E I++ FG +
Sbjct: 59 AVTMGFGDPLSPLQSMAAQRQRALAI-----MCRVYVGSIYYELGEDTIRQAFAPFGPIK 113
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
D+ D T KG+ F Y+ P +A +N + +G + + V R + + GQ++
Sbjct: 114 SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS-NIGQAQ 169
Score = 111 (44.1 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+R++V + ++ IK + E+FG + L +D TG KGYGF Y+ + A +
Sbjct: 183 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 242
Query: 355 ALNGLKMGDKTLTVRRA 371
++N +G + L V +A
Sbjct: 243 SMNLFDLGGQYLRVGKA 259
Score = 74 (31.1 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 148 LPFGATQLG-AFPLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIG 203
L A +G PL P+Q M Q R RVYVG + E I F+
Sbjct: 55 LQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF----- 109
Query: 204 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTD 258
G + +V + H K FAFVE E A A+ ++ ++ G ++V RP++
Sbjct: 110 GPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 164
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 140 (54.3 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
EG R+FVGGL T+ ++ FG + ++ +RDTG S+G+GF + D D
Sbjct: 5 EG-SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQSKTE 381
+ ++G GD+ ++V RA G+ E
Sbjct: 64 SIREMHGRDFGDRVISVNRAEPKLGRDDGE 93
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 134 (52.2 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVG LPY +E ++ + G + LV+DRD+G KG+G+ +++ P +A L
Sbjct: 254 IFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESPDSVMLALK-L 312
Query: 357 NGLKMGDKTLTVRRATASSGQSKT 380
NG + + + V+R+ + KT
Sbjct: 313 NGSTLQQRKIRVKRSVKKEKEKKT 336
Score = 50 (22.7 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 25/110 (22%), Positives = 51/110 (46%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFF--SQVMTAIGGNSAGPGDAVVNVYIN- 219
V+ ++ + R V+VG LP ++ + + F S V+ ++ S D ++ +
Sbjct: 137 VKFNAEERLKMKRTVFVGNLPSSCKKKDLLSVFKKSGVIESVRFRSVIREDPTMSRKVAA 196
Query: 220 -----HEKKF---AFVEMRTVEEASNAMALDGI-IFEGVAVRVRRPTDYN 260
H KK A++ + E A++A+ +G I G +RV R + ++
Sbjct: 197 IQRKVHPKKQNINAYIVFKEEESATDALKWNGHEIQAGFYIRVDRVSQHS 246
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 31/100 (31%), Positives = 48/100 (48%)
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G S +G VFVG + Y +E I+ + G + +V DR+TG KGYGF
Sbjct: 5 GYKSSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFI 64
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTE 381
+ D ++A LNG ++ + L V +A+ G + E
Sbjct: 65 EFPDIQTAEVAIRNLNGYELSGRILRVD--SAAGGMNMEE 102
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 69 LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 128
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 129 NGLRLQTKTIKVSYARPSS 147
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VF+GG PY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 101 NGLRLQTKTIKVSYARPSS 119
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 101 NGLRLQTKTIKVSYARPSS 119
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 101 NGLRLQTKTIKVSYARPSS 119
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 293 GPDR----VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GPDR VF+G +PY TE Q+K++L + GT+ F L+ + +TG KGYGF + D
Sbjct: 2 GPDRAGKSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADA 61
Query: 349 TDIACAALNGLK-MGDK 364
A LN + MG K
Sbjct: 62 AASAVRNLNDYEIMGRK 78
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 106 (42.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+F+G L E + + +FG L +++D DTGNSKGY F + +D A A
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 356 LNGLKMGDKTLTVRRA 371
+NG + ++ +TV A
Sbjct: 162 MNGQYLCNRPITVSYA 177
Score = 79 (32.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V H+
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTL 263
+ FVE + E+A A+ + +I G +RV + + +N L
Sbjct: 55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+F+G L E + + +FG L +++D DTGNSKGY F + +D A A
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 356 LNGLKMGDKTLTVRRA 371
+NG + ++ +TV A
Sbjct: 162 MNGQYLCNRPITVSYA 177
Score = 79 (32.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V H+
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTL 263
+ FVE + E+A A+ + +I G +RV + + +N L
Sbjct: 55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+F+G L E + + +FG L +++D DTGNSKGY F + +D A A
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 356 LNGLKMGDKTLTVRRA 371
+NG + ++ +TV A
Sbjct: 162 MNGQYLCNRPITVSYA 177
Score = 79 (32.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V H+
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTL 263
+ FVE + E+A A+ + +I G +RV + + +N L
Sbjct: 55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+F+G L E + + +FG L +++D DTGNSKGY F + +D A A
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 356 LNGLKMGDKTLTVRRA 371
+NG + ++ +TV A
Sbjct: 162 MNGQYLCNRPITVSYA 177
Score = 79 (32.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V H+
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTL 263
+ FVE + E+A A+ + +I G +RV + + +N L
Sbjct: 55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+F+G L E + + +FG L +++D DTGNSKGY F + +D A A
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 356 LNGLKMGDKTLTVRRA 371
+NG + ++ +TV A
Sbjct: 162 MNGQYLCNRPITVSYA 177
Score = 79 (32.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V H+
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTL 263
+ FVE + E+A A+ + +I G +RV + + +N L
Sbjct: 55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+F+G L E + + +FG L +++D DTGNSKGY F + +D A A
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 356 LNGLKMGDKTLTVRRA 371
+NG + ++ +TV A
Sbjct: 162 MNGQYLCNRPITVSYA 177
Score = 79 (32.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V H+
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTL 263
+ FVE + E+A A+ + +I G +RV + + +N L
Sbjct: 55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+F+G L E + + +FG L +++D DTGNSKGY F + +D A A
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 356 LNGLKMGDKTLTVRRA 371
+NG + ++ +TV A
Sbjct: 162 MNGQYLCNRPITVSYA 177
Score = 79 (32.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V H+
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQ 54
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTL 263
+ FVE + E+A A+ + +I G +RV + + +N L
Sbjct: 55 G-YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNL 96
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 129 NGLRLQTKTIKVSYARPSS 147
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 130 NGLRLQTKTIKVSYARPSS 148
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 130 NGLRLQTKTIKVSYARPSS 148
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 135 (52.6 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 33/131 (25%), Positives = 59/131 (45%)
Query: 256 PTDYNPTLAAALGPGQPSPNLNLAAV--GLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
PT PT A P P+ ++ + +F+ LP +T ++
Sbjct: 59 PTPI-PTPAVVTTPPPPTTTTTTTTTMTQTSTSTSSNSANSGNLFISFLPATYTSDTLRS 117
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+ +FG + ++ D +TG S+G+GF ++D A A ++NG K+ +KTL VR A +
Sbjct: 118 IFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVRFANS 177
Query: 374 SSGQSKTEQES 384
+ T +
Sbjct: 178 DPNSNNTNNSN 188
Score = 48 (22.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 455 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509
G + +V I R DQ G G F+ +A N+++G + GG T++ +
Sbjct: 406 GAIASVKIVR-DQTTQVCRGYG--FVRMVSLADSYSAINSINGVQVGGKTISVSF 457
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL + E +++ SFG + +VKDR+T S+G+GF + +P A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 356 LNGLKMGDKTLTVRRATASS 375
+NG + + + V A S+
Sbjct: 67 MNGESLDGRQIRVDHAGKSA 86
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 136 (52.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGG+ TE + FG + L+ D+DTG S+G+GF Y PA D C
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN 306
Query: 356 LNGLKMGDKTLTVRRATASSGQ 377
L + K + V+RA A GQ
Sbjct: 307 -KYLTLKGKAMEVKRA-APRGQ 326
Score = 119 (46.9 bits), Expect = 0.00042, P = 0.00042
Identities = 37/126 (29%), Positives = 55/126 (43%)
Query: 256 PTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR-VFVGGLPYYFTETQIKEL 314
P + N A G G P P S G GP R F+GGL + TE +
Sbjct: 125 PGNANQQNFGAAG-GVPPPPPPAPTANATSAESAG--GPSRKCFIGGLSWDTTEEALVSH 181
Query: 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-KTLTVRRATA 373
+ +G + + ++KD TG S+G+GF ++D D A L + D K + +RA +
Sbjct: 182 FQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVD---ALLKDRHVLDGKLIDPKRAIS 238
Query: 374 SSGQSK 379
Q K
Sbjct: 239 KEDQEK 244
Score = 47 (21.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 146 NMLPFGATQLGAFPLMPVQVMTQQATRH------ARRVYVGGLPPLANEQAIATFFSQ 197
N FGA G P P T AT +R+ ++GGL E+A+ + F +
Sbjct: 129 NQQNFGAA--GGVPPPPPPAPTANATSAESAGGPSRKCFIGGLSWDTTEEALVSHFQK 184
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/74 (41%), Positives = 41/74 (55%)
Query: 302 LPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM 361
LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A LNGL++
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 362 GDKTLTVRRATASS 375
KT+ V A SS
Sbjct: 106 QTKTIKVSYARPSS 119
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/74 (41%), Positives = 41/74 (55%)
Query: 302 LPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM 361
LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A LNGL++
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 362 GDKTLTVRRATASS 375
KT+ V A SS
Sbjct: 106 QTKTIKVSYARPSS 119
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 137 (53.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A ++FVGGL + E ++++ +G + +VKDR+T S+G+GF +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 351 IACAALNGLKMGDKTLTVRRATASS 375
A A+NG + + + V +A SS
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A ++FVGGL + E ++++ +G + +VKDR+T S+G+GF +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 351 IACAALNGLKMGDKTLTVRRATASS 375
A A+NG + + + V +A SS
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS 86
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
V+VGG+P+ TE + + +G + +L++D+ TG SKG+ F Y+D T +A L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
NG + +T+ V A + ++E+
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEEDEET 125
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 116 (45.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
++++VG L Y T +++ +G + L+ DR+TG SKG+ F Y A +
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 355 ALNGLKMGDKTLTVRRATASSGQSKTE 381
NG+ + + + V A ++G + +
Sbjct: 78 KANGIDLQGRKIRVNIARENTGDRRRD 104
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 116 (45.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
++++VG L Y T +++ +G + L+ DR+TG SKG+ F Y A +
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 355 ALNGLKMGDKTLTVRRATASSGQSKTE 381
NG+ + + + V A ++G + +
Sbjct: 78 KANGIDLQGRKIRVNIARENTGDRRRD 104
>TAIR|locus:2184367 [details] [associations]
symbol:AT5G04600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006333 "chromatin assembly or disassembly" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0051604
"protein maturation" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162875 eggNOG:NOG244773
HOGENOM:HOG000242795 KO:K14838 HSSP:Q61474 UniGene:At.4932
UniGene:At.65019 EMBL:AF378899 EMBL:AY055787 EMBL:AY063822
EMBL:AY123013 IPI:IPI00541604 PIR:T48456 RefSeq:NP_196080.1
ProteinModelPortal:Q9LZ65 SMR:Q9LZ65 IntAct:Q9LZ65 STRING:Q9LZ65
PaxDb:Q9LZ65 PRIDE:Q9LZ65 EnsemblPlants:AT5G04600.1 GeneID:830337
KEGG:ath:AT5G04600 TAIR:At5g04600 InParanoid:Q9LZ65 OMA:IGHIPHG
PhylomeDB:Q9LZ65 ProtClustDB:CLSN2686415 ArrayExpress:Q9LZ65
Genevestigator:Q9LZ65 Uniprot:Q9LZ65
Length = 222
Score = 131 (51.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+++G +P+ F ET+I+ FGT+ + +++ TG SK +GF ++DP V +IA A+
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 357 NGLKMGDKTLTV 368
N + + L V
Sbjct: 122 NDYLLMEHMLKV 133
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 106 (42.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+F+G L E + + +FG L +++D DTGNSKGY F + +D A A
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 356 LNGLKMGDKTLTVRRA 371
+NG + ++ +TV A
Sbjct: 162 MNGQYLCNRPITVSYA 177
Score = 75 (31.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEAS 236
VYVGGL +E + F Q + N+ P D V H+ + FVE + E+A
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG---QHQG-YGFVEFLSEEDAD 68
Query: 237 NAMALDGII-FEGVAVRVRRPTDYNPTL 263
A+ + +I G +RV + + +N L
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHNKNL 96
>UNIPROTKB|F1RXX7 [details] [associations]
symbol:MKI67 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AEMK01028690 EMBL:CU655817
Ensembl:ENSSSCT00000017130 Uniprot:F1RXX7
Length = 294
Score = 134 (52.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
P ++VG LP ETQI+ FGT+ L + + TGNSKGYGF ++ V IA
Sbjct: 44 PGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAA 103
Query: 354 AALNGLKMGDKTL 366
+N G++ L
Sbjct: 104 ETMNNYLFGERLL 116
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 132 (51.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 34/102 (33%), Positives = 52/102 (50%)
Query: 270 GQ-PSPNLNLAAVGLASGA-----IGGAEGP-DRVFVGGLPYYFTETQIKELLESFGTLH 322
GQ P ++ AA LA +G + ++FVGGLPY+ ++ + E E FG +
Sbjct: 3 GQVQDPLVHAAAAALAQSTNAEPVVGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIE 62
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364
++ DR+T S+GYGF +D A + AC N + G K
Sbjct: 63 EAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRK 104
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 132 (51.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 34/102 (33%), Positives = 52/102 (50%)
Query: 270 GQ-PSPNLNLAAVGLASGA-----IGGAEGP-DRVFVGGLPYYFTETQIKELLESFGTLH 322
GQ P ++ AA LA +G + ++FVGGLPY+ ++ + E E FG +
Sbjct: 3 GQVQDPLVHAAAAALAQSTNAEPVVGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIE 62
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364
++ DR+T S+GYGF +D A + AC N + G K
Sbjct: 63 EAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRK 104
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 114 (45.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
+++VG L Y + ++ ++GT+ +V DR TG S+G+GF A A
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 356 LNGLKMGDKTLTVRRA 371
LNG +M + L V A
Sbjct: 64 LNGKEMDGRNLMVNEA 79
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 119 (46.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGL + E +++ +G + +VKDR+T S+G+GF +++ A A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 356 LNGLKMGDKTLTVRRATASSGQSK 379
+NG + + + V +A SSG+ +
Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERR 89
>UNIPROTKB|B4DQL3 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AL589765 UniGene:Hs.26047 HGNC:HGNC:11967
EMBL:AK298852 IPI:IPI00909704 SMR:B4DQL3 STRING:B4DQL3
Ensembl:ENST00000392706 UCSC:uc010pdh.2 Uniprot:B4DQL3
Length = 260
Score = 131 (51.2 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 292 EGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
EGPD +F+ LP FT+++I ++ FG + + DR T SK +GF + +PA
Sbjct: 170 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 229
Query: 350 DIACAALNGLKMGDKTLTVR 369
A A+NG ++G K L V+
Sbjct: 230 QAAIQAMNGFQIGMKRLKVQ 249
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 113 (44.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++VG LP+ Q++E+ FG + G ++ ++ TG S+GYGF +D L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFM-TGL 63
Query: 357 NGLKMGDKTLTVRRATASSG 376
NG ++ + L V A +G
Sbjct: 64 NGKEVEGRQLVVSEARERNG 83
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 113 (44.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++VG LP+ Q++E+ FG + G ++ ++ TG S+GYGF +D L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFM-TGL 63
Query: 357 NGLKMGDKTLTVRRATASSG 376
NG ++ + L V A +G
Sbjct: 64 NGKEVEGRQLVVSEARERNG 83
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 113 (44.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGL + ++ +K+ SFG + ++ DR+TG S+G+GF + + A
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 356 LNGLKMGDKTLTVRRATASSGQSKT 380
++G ++ + + V AT S ++
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRS 120
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 120 (47.3 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
R FVGGL + + ++ FG + ++ DR++G S+G+GF ++D A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 356 LNGLKMGDKTLTVRRATA-SSG 376
+NG ++ + +TV A + SG
Sbjct: 67 MNGKELDGRVITVNEAQSRGSG 88
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 131 (51.2 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 46/159 (28%), Positives = 74/159 (46%)
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTDYN-PTLAAALGPGQP 272
+V + H K FAFVE E A A+ ++ ++ G ++VR+ + P A P +P
Sbjct: 29 SVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVRQGAKASIPQACRAAPPRKP 87
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+A GL +I P LP ++ IK + E+FG + L +D T
Sbjct: 88 F----VAGPGLTGLSIS----PP------LPQDLSDDDIKSVFEAFGKIKSCTLARDPTT 133
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
G KGYGF Y+ + A +++N +G + L V +A
Sbjct: 134 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 172
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 135 (52.6 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 37/116 (31%), Positives = 58/116 (50%)
Query: 259 YNPTLAAALG-PGQPSPNLN--LAAVGLASGAIGGAEGPD--RVFVGGLPYYFTETQIKE 313
Y T AA G GQP P+ +A + EGP+ +F+ LP FT++++ +
Sbjct: 326 YTATYPAAYGLVGQPFPHQPTLVAQQPQQPQQLQQREGPEGCNIFIYHLPQEFTDSEMLQ 385
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369
+ FG + + DR T SK +GF + +PA A A+NG ++G K L V+
Sbjct: 386 MFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 441
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 112 (44.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+ P ++F+GGL E +K + G + L+KDR T S+G+ F +++PA
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
Query: 351 IACAALNGLKMGDKTLTVRR 370
A +NG M D TL + R
Sbjct: 63 NAAKDMNGKMMVD-TLLISR 81
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 112 (44.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
V+VG +PY TE +I + G ++ +V DR+TG +G+ F + + A A L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 357 NGLKMGDKTLTVRRA 371
NG+ + L V A
Sbjct: 68 NGVAFNGRNLRVNYA 82
>SGD|S000003012 [details] [associations]
symbol:RNA15 "Component of the cleavage and polyadenylation
factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0006379 "mRNA
cleavage" evidence=IDA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000003012
EMBL:BK006941 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:NOG246793 GO:GO:0006378 GO:GO:0006379 GO:GO:0005849
KO:K14407 InterPro:IPR026896 Pfam:PF14304
GeneTree:ENSGT00550000074641 OrthoDB:EOG4GQTF6 PDB:2KM8 PDBsum:2KM8
PDB:2L9B PDBsum:2L9B EMBL:M73462 EMBL:Z72566 PIR:B40257
RefSeq:NP_011471.1 PDB:2X1A PDB:2X1B PDB:2X1F PDBsum:2X1A
PDBsum:2X1B PDBsum:2X1F ProteinModelPortal:P25299 SMR:P25299
DIP:DIP-1489N IntAct:P25299 MINT:MINT-389896 STRING:P25299
PaxDb:P25299 PeptideAtlas:P25299 EnsemblFungi:YGL044C GeneID:852838
KEGG:sce:YGL044C CYGD:YGL044c HOGENOM:HOG000247912 OMA:NINMTTP
EvolutionaryTrace:P25299 NextBio:972414 Genevestigator:P25299
GermOnline:YGL044C Uniprot:P25299
Length = 296
Score = 131 (51.2 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 285 SGAIGGAEG--PDRV-FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
SG G + P RV ++G +PY TE QI +L + G + ++ D TG SKGY F
Sbjct: 5 SGVNAGVQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFI 64
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATAS--SGQSKTEQE 383
++D + A LNG ++G + L ++ S SG S+ +Q+
Sbjct: 65 EFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDISGVSQQQQQ 108
>UNIPROTKB|I3LK87 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
Uniprot:I3LK87
Length = 312
Score = 131 (51.2 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 297 VFVGGLPYYFTETQIK---ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQINRYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 97
Query: 354 AALNGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 DNFNGIKIKGRTIRV 112
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 132 (51.5 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 26/93 (27%), Positives = 50/93 (53%)
Query: 283 LASGAIGGAEGPD----RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+ GA GG + D ++FVGG+P TE ++K+ +G + +++D +T S+G+
Sbjct: 94 IPKGA-GGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGF 152
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
GF ++ V D + N + M D + +++A
Sbjct: 153 GFVIFDSEEVVDELLSKGNMIDMADTQVEIKKA 185
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 107 (42.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG LP+ ++++L G + +V DR+TG S+G+GF D + A +A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 356 LNGLKMGDKTLTVRRA 371
L+G + + + V A
Sbjct: 305 LDGQNLEGRAIRVNVA 320
Score = 66 (28.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEA 235
+++VG L N QA+A F Q T + + N + + F FV M +V+EA
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTV------EIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 236 SNAM 239
A+
Sbjct: 205 ETAV 208
>UNIPROTKB|G4ND38 [details] [associations]
symbol:MGG_00985 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:CM001235 Gene3D:3.30.70.330
GO:GO:0003676 RefSeq:XP_003717964.1 ProteinModelPortal:G4ND38
EnsemblFungi:MGG_00985T0 GeneID:2674402 KEGG:mgr:MGG_00985
Uniprot:G4ND38
Length = 454
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 53/206 (25%), Positives = 87/206 (42%)
Query: 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK----------FAF 226
V++G LP A A F ++ GG+ VN+ ++ +KK FA+
Sbjct: 112 VWIGNLPFTATR---ADVFKWLVENSGGSITEDAITRVNLPLSKDKKPGSERRDNKGFAY 168
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYN----PTLAA-ALGPGQPSPNLNLAAV 281
V+ + A+AL + G + ++ + P AA A G + P +
Sbjct: 169 VDFAAYDACIAAIALSESDYGGRKLLIKDSKSFEGRPAPAPAATADGADETKPG---SKA 225
Query: 282 GLASGAIGGAEGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G A+GA A + +++VG LPY TE ++ E GT+ + D+G KGYG
Sbjct: 226 GAAAGATAAAPSTNTKKIYVGNLPYDATEETLRWQFEKCGTIEWAKVATFEDSGKCKGYG 285
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKT 365
+ + D A D A +K +T
Sbjct: 286 WVRFADSAACDWAVKGFVKIKEAVET 311
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 42/121 (34%), Positives = 58/121 (47%)
Query: 266 ALGPGQPSPN---LNLAAVGL-ASGAIGGA--EGPDR------VFVGGLPYYFTETQIKE 313
ALGPG N N A G A +G + P + +++G LP + +
Sbjct: 439 ALGPGSSGSNPPWANNAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLIN 498
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
L SFG + ++KDR TG SKGYGF Y D + + A A+NG + +TL VR A
Sbjct: 499 LFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGK 558
Query: 374 S 374
S
Sbjct: 559 S 559
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 41/125 (32%), Positives = 55/125 (44%)
Query: 269 PGQPSPNLN-LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 327
P Q PN N A G +G+ G E + V LP TE +I+ L S G + L+
Sbjct: 122 PQQAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLI 181
Query: 328 KDRDT-------------GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
+D+ G S GYGF Y P + A LNGL++ +KT+ V A S
Sbjct: 182 RDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPS 241
Query: 375 SGQSK 379
S K
Sbjct: 242 SDAIK 246
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 110 (43.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 292 EGPDR-VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
E DR VFVG L E + EL G L + KDRD GN K +GF ++ P
Sbjct: 6 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRD-GNPKSFGFVCFKHPESVS 64
Query: 351 IACAALNGLKMGDKTLTVR 369
A A LNG+++ + + V+
Sbjct: 65 YAIALLNGIRLYGRPINVQ 83
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+ P ++F+GGL E ++ + +G + L+KDR+T S+G+ F ++ PA
Sbjct: 6 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 65
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQS 378
A +NG + K + V +AT S +S
Sbjct: 66 DAARDMNGKSLDGKAIKVEQATKPSFES 93
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 120 (47.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 39/117 (33%), Positives = 56/117 (47%)
Query: 244 IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR-VFVGGL 302
I F A R YN A + + + LN A +G +G AEGP+ VFVG L
Sbjct: 126 IEFVNHATAERNLQTYN---GAPMPSSEQAFRLNWAQLG--AGERRQAEGPEHTVFVGDL 180
Query: 303 PYYFTETQIKELLES-FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358
T+ + E ++ + ++ G +V DR TG SKGYGF + D + A +NG
Sbjct: 181 APDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
Score = 54 (24.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY-- 509
G++G LV+V IP G+ G F++Y + A + L+G + GG ++ +
Sbjct: 299 GQFGELVHVKIP-----AGKRCG----FVQYANRACAEQALSVLNGTQLGGQSIRLSWGR 349
Query: 510 YPEDKYFNKD 519
P +K D
Sbjct: 350 SPSNKQTQPD 359
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+ P ++F+GGL E ++ + +G + L+KDR+T S+G+ F ++ PA
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQS 378
A +NG + K + V +AT S +S
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFES 91
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 60/235 (25%), Positives = 98/235 (41%)
Query: 149 PFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG 208
P + GA P+ V Y LPP+ N+ A + +Q G N+A
Sbjct: 210 PTNPSLFGALPMGYVPPYNGYGYHQPPGTYGYMLPPIQNQAAFSNMIAQPNQ--GNNNAL 267
Query: 209 PGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR--VR-RPTDYNPTLAA 265
G + +V ++ F S A+ G F R V RP +P
Sbjct: 268 QGTSPDSVPPRLARR-NFPMPPGNYMGSGYPAMRGHPFPFAYPRGIVSPRPLSSSP---G 323
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPD--RVFVGGLPYYFTETQIKELLESFGTLHG 323
++ PG +P +GL+S + EGP+ +F+ +P F + ++ +SFG +
Sbjct: 324 SISPGMSTP----LGIGLSS--VVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLS 377
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR-RATASSGQ 377
+ D+ TG SK +GF Y A A +NG +G K L V+ + +++GQ
Sbjct: 378 AKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSNNGQ 432
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP ++ +++ L S G + L++D+ G+S GYGF Y +P + A + L
Sbjct: 36 LIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTL 95
Query: 357 NGLKMGDKTLTVRRATASSGQSK 379
NGL++ KT+ V A SS K
Sbjct: 96 NGLRLQSKTIKVSYARPSSDSIK 118
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 131 (51.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/80 (40%), Positives = 43/80 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAA 355
+ V LP T+ ++K L S G + LV+D+ T G S GYGF Y DP + A
Sbjct: 68 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINT 127
Query: 356 LNGLKMGDKTLTVRRATASS 375
LNGL++ KT+ V A SS
Sbjct: 128 LNGLRLQTKTIKVSYARPSS 147
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+ P ++F+GGL E ++ + +G + L+KDR+T S+G+ F ++ PA
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQS 378
A +NG + K + V +AT S +S
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFES 91
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 131 (51.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 292 EGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
EGPD +F+ LP FT+++I ++ FG + + DR T SK +GF + +PA
Sbjct: 325 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 384
Query: 350 DIACAALNGLKMGDKTLTVR 369
A A+NG ++G K L V+
Sbjct: 385 QAAIQAMNGFQIGMKRLKVQ 404
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A ++FVGGL + E ++++ +G + +VKDR+T S+G+GF +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 351 IACAALNGLKMGDKTLTV 368
A A+NG + + + V
Sbjct: 62 DAMMAMNGKSVDGRQIRV 79
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 121 (47.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGL + TE +++ +G + + ++R+T S+G+GF +++P A
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 356 LNGLKMGDKTLTVRRATASSG 376
+NG + +T+ V A G
Sbjct: 66 MNGKSVDGRTIRVDEAGKGGG 86
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 104 (41.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 21/85 (24%), Positives = 43/85 (50%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGL E +++ FG + +++ D++TG +G+GF ++D D A
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVL 161
Query: 356 ----LNGLKMGDKTLTVRRATASSG 376
+NG K+ K ++ ++G
Sbjct: 162 KFHMINGHKVEVKKALTKQEMQAAG 186
Score = 66 (28.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 25/92 (27%), Positives = 39/92 (42%)
Query: 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV--NVYINHEKK 223
MT Q +++VGGL + + F Q G D VV N + +
Sbjct: 1 MTAQMENQLCKLFVGGLNVQTTDDGLRNHFEQY-----GKLT---DCVVVQNQQLKRSRC 52
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255
F FV + +EA +AM+ I +G V ++R
Sbjct: 53 FGFVTYSSPDEADSAMSARPHILDGNNVELKR 84
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP ++ +I+ L SFG + L++D+ TG S GYGF Y + A AL
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 357 NGLKMGDKTLTVRRATASSGQSK 379
NGL++ +KT+ V A SS K
Sbjct: 172 NGLRLQNKTIKVSIARPSSESIK 194
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 130 (50.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+ P ++F+GGL E ++ + +G + L+KDR+T S+G+ F ++ PA
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQS 378
A +NG + K + V +AT S +S
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFES 91
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 107 (42.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG LPY E+ ++E G++ +V+DR TG +G+G+ ++++ +A
Sbjct: 289 VFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFENTDAVHLALKLN 348
Query: 357 NGLKMGDKTLTVR 369
N MG K +R
Sbjct: 349 NSELMGRKLRVMR 361
Score = 67 (28.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/98 (23%), Positives = 49/98 (50%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQV--MTAIGGNSAGPGD-------AVVNVYI 218
++ ++ R V+VG LP N++ + +FF + + ++ S P + A + I
Sbjct: 178 EEKLKNERTVFVGNLPVTCNKKKLKSFFREYGQIDSVRFRSLIPAEGTLSKKLAAIKRKI 237
Query: 219 NHEKKF--AFVEMRTVEEASNAMALDGI-IFEGVAVRV 253
+ ++K+ A+V + A+ A+ +G I +G +RV
Sbjct: 238 HPDQKYINAYVVFKDESSATKALKRNGAQIADGFRIRV 275
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 292 EGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
EGPD +F+ LP FT+++I ++ FG + + DR T SK +GF + +PA
Sbjct: 371 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 430
Query: 350 DIACAALNGLKMGDKTLTVR 369
A A+NG ++G K L V+
Sbjct: 431 QAAIQAMNGFQIGMKRLKVQ 450
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 292 EGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
EGPD +F+ LP FT+++I ++ FG + + DR T SK +GF + +PA
Sbjct: 375 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 434
Query: 350 DIACAALNGLKMGDKTLTVR 369
A A+NG ++G K L V+
Sbjct: 435 QAAIQAMNGFQIGMKRLKVQ 454
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 292 EGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
EGPD +F+ LP FT+++I ++ FG + + DR T SK +GF + +PA
Sbjct: 375 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 434
Query: 350 DIACAALNGLKMGDKTLTVR 369
A A+NG ++G K L V+
Sbjct: 435 QAAIQAMNGFQIGMKRLKVQ 454
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 292 EGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
EGPD +F+ LP FT+++I ++ FG + + DR T SK +GF + +PA
Sbjct: 375 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 434
Query: 350 DIACAALNGLKMGDKTLTVR 369
A A+NG ++G K L V+
Sbjct: 435 QAAIQAMNGFQIGMKRLKVQ 454
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 292 EGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
EGPD +F+ LP FT+++I ++ FG + + DR T SK +GF + +PA
Sbjct: 376 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 435
Query: 350 DIACAALNGLKMGDKTLTVR 369
A A+NG ++G K L V+
Sbjct: 436 QAAIQAMNGFQIGMKRLKVQ 455
>WB|WBGene00011730 [details] [associations]
symbol:drr-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0006412
"translation" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008340 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005844
GeneTree:ENSGT00530000063406 HSSP:P26368 EMBL:Z81120 PIR:T24858
RefSeq:NP_499818.1 ProteinModelPortal:O45781 SMR:O45781
DIP:DIP-26980N MINT:MINT-1066038 STRING:O45781 PaxDb:O45781
EnsemblMetazoa:T12D8.2.1 EnsemblMetazoa:T12D8.2.2 GeneID:259546
KEGG:cel:CELE_T12D8.2 UCSC:T12D8.2.1 CTD:259546 WormBase:T12D8.2
eggNOG:NOG240551 InParanoid:O45781 OMA:YVTFENE NextBio:952074
Uniprot:O45781
Length = 207
Score = 123 (48.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 296 RVFVGGLPYYFTETQIKELLE--SFGT--LHGFD--LVKDRDTGNSKGYGFCVYQDPAVT 349
+ F+GGLPY T I+ +L+ F L FD LV DRD+G+ KG+ + +++
Sbjct: 7 KAFIGGLPYDSIATDIETILKHCKFTDEELKKFDIHLVHDRDSGSFKGFAYVTFENEQQM 66
Query: 350 DIACAALNGLKMGDKTLTVRRA 371
+ A + LNG G++ L V RA
Sbjct: 67 NTAISGLNGADFGNRVLKVNRA 88
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 117 (46.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A ++FVGGL + E ++++ +G + +VKDR+T S+G+GF +++
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 351 IACAALNGLKMGDKTLTVRRATASS 375
A A+NG + + + V +A SS
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS 86
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 108 (43.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+ P ++F+GGL E ++ + +G + L+KDR+T S+G+ F ++ PA
Sbjct: 6 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 65
Query: 351 IACAALNGLKM 361
A +NG M
Sbjct: 66 DAARDMNGKMM 76
WARNING: HSPs involving 185 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 522 411 0.00080 118 3 11 22 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 435
No. of states in DFA: 610 (65 KB)
Total size of DFA: 231 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.36u 0.12s 31.48t Elapsed: 00:00:01
Total cpu time: 31.39u 0.12s 31.51t Elapsed: 00:00:01
Start: Sat May 11 15:11:36 2013 End: Sat May 11 15:11:37 2013
WARNINGS ISSUED: 2