Query 009944
Match_columns 522
No_of_seqs 373 out of 3329
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 19:11:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.4E-61 2E-65 498.5 45.9 395 110-520 110-509 (509)
2 TIGR01622 SF-CC1 splicing fact 100.0 1.7E-51 3.7E-56 422.9 33.8 318 171-518 86-453 (457)
3 KOG0120 Splicing factor U2AF, 100.0 2.7E-47 5.8E-52 370.3 24.3 387 101-521 106-500 (500)
4 KOG0147 Transcriptional coacti 100.0 2.2E-43 4.9E-48 337.2 19.9 320 169-518 174-533 (549)
5 TIGR01645 half-pint poly-U bin 100.0 7.8E-42 1.7E-46 345.1 31.5 323 171-522 104-612 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.3E-42 1.4E-46 340.4 25.6 289 174-514 3-350 (352)
7 KOG0145 RNA-binding protein EL 100.0 5.7E-37 1.2E-41 265.1 22.2 292 171-513 38-358 (360)
8 TIGR01628 PABP-1234 polyadenyl 100.0 2.3E-36 5E-41 317.7 29.0 273 174-514 88-365 (562)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 1.7E-36 3.6E-41 306.5 22.8 242 173-512 57-306 (578)
10 TIGR01628 PABP-1234 polyadenyl 100.0 9.7E-36 2.1E-40 312.9 26.7 254 176-512 2-260 (562)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.3E-35 5.1E-40 301.8 27.5 289 174-512 2-350 (481)
12 KOG0117 Heterogeneous nuclear 100.0 8.4E-36 1.8E-40 277.3 21.8 244 172-512 81-330 (506)
13 KOG0148 Apoptosis-promoting RN 100.0 2.6E-35 5.6E-40 256.8 17.5 237 171-514 3-239 (321)
14 KOG0127 Nucleolar protein fibr 100.0 1.4E-34 3.1E-39 275.0 20.0 323 175-511 6-376 (678)
15 KOG0124 Polypyrimidine tract-b 100.0 1.1E-33 2.4E-38 256.0 19.6 324 170-522 109-544 (544)
16 KOG0144 RNA-binding protein CU 100.0 3.8E-33 8.3E-38 258.3 20.9 172 169-375 29-207 (510)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.4E-32 3E-37 281.4 26.8 300 174-512 96-479 (481)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.7E-30 1.5E-34 266.6 29.7 193 173-373 294-501 (509)
19 TIGR01622 SF-CC1 splicing fact 100.0 5E-30 1.1E-34 263.8 25.5 176 295-512 90-265 (457)
20 TIGR01659 sex-lethal sex-letha 100.0 4.4E-30 9.5E-35 247.9 18.4 170 170-374 103-275 (346)
21 TIGR01659 sex-lethal sex-letha 100.0 2.7E-29 5.9E-34 242.5 20.6 170 292-514 105-276 (346)
22 KOG0123 Polyadenylate-binding 100.0 2.3E-29 5.1E-34 243.9 19.9 242 176-512 3-245 (369)
23 KOG0123 Polyadenylate-binding 100.0 8.3E-29 1.8E-33 240.1 19.5 288 156-512 60-348 (369)
24 TIGR01645 half-pint poly-U bin 99.9 8.4E-27 1.8E-31 236.3 19.2 176 294-511 107-282 (612)
25 KOG0148 Apoptosis-promoting RN 99.9 6.6E-27 1.4E-31 204.4 14.2 182 174-380 62-244 (321)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.4E-26 5.2E-31 228.6 19.8 166 294-512 3-170 (352)
27 KOG0110 RNA-binding protein (R 99.9 7.9E-26 1.7E-30 223.0 19.0 289 171-515 382-695 (725)
28 KOG0144 RNA-binding protein CU 99.9 5.6E-26 1.2E-30 211.0 14.1 172 292-516 32-209 (510)
29 KOG0131 Splicing factor 3b, su 99.9 5E-25 1.1E-29 181.7 12.5 165 173-377 8-180 (203)
30 KOG0145 RNA-binding protein EL 99.9 3.9E-24 8.4E-29 185.7 14.4 168 291-511 38-207 (360)
31 KOG0131 Splicing factor 3b, su 99.9 2.7E-24 5.8E-29 177.4 12.3 171 292-514 7-178 (203)
32 KOG0147 Transcriptional coacti 99.9 1.8E-23 3.8E-28 201.1 15.2 178 295-513 180-358 (549)
33 TIGR01648 hnRNP-R-Q heterogene 99.9 9.9E-23 2.2E-27 206.7 20.7 198 232-513 19-222 (578)
34 KOG0117 Heterogeneous nuclear 99.9 1.3E-22 2.7E-27 189.8 15.5 164 170-376 160-333 (506)
35 KOG0127 Nucleolar protein fibr 99.9 5.9E-23 1.3E-27 196.2 13.5 190 295-514 6-197 (678)
36 KOG0109 RNA-binding protein LA 99.9 2.7E-22 5.8E-27 177.5 11.4 148 295-513 3-150 (346)
37 KOG1548 Transcription elongati 99.9 2.7E-21 5.8E-26 175.4 18.1 206 294-513 134-352 (382)
38 KOG0124 Polypyrimidine tract-b 99.9 3.4E-22 7.4E-27 181.7 12.4 173 295-509 114-286 (544)
39 KOG0109 RNA-binding protein LA 99.9 4.2E-22 9E-27 176.3 10.9 146 176-374 4-150 (346)
40 KOG4212 RNA-binding protein hn 99.9 3.2E-19 7E-24 166.1 25.1 187 172-370 42-290 (608)
41 KOG1190 Polypyrimidine tract-b 99.9 4.5E-21 9.8E-26 177.2 12.6 303 172-512 26-372 (492)
42 KOG0110 RNA-binding protein (R 99.8 3.8E-20 8.2E-25 183.1 12.4 167 175-373 516-692 (725)
43 KOG0146 RNA-binding protein ET 99.8 2.9E-19 6.3E-24 156.2 14.7 204 293-513 18-365 (371)
44 KOG0120 Splicing factor U2AF, 99.8 7.7E-19 1.7E-23 172.0 17.5 187 171-372 286-490 (500)
45 KOG1190 Polypyrimidine tract-b 99.8 5.9E-18 1.3E-22 156.8 20.2 298 174-512 150-490 (492)
46 KOG4211 Splicing factor hnRNP- 99.8 1.2E-17 2.6E-22 159.1 22.0 170 174-372 10-180 (510)
47 KOG4205 RNA-binding protein mu 99.8 1.7E-19 3.7E-24 168.7 6.8 173 173-375 5-177 (311)
48 KOG4206 Spliceosomal protein s 99.8 1.1E-17 2.5E-22 144.5 15.3 185 174-372 9-220 (221)
49 KOG0105 Alternative splicing f 99.8 2E-17 4.4E-22 136.9 15.2 176 172-369 4-185 (241)
50 KOG0146 RNA-binding protein ET 99.7 1.4E-17 2.9E-22 145.8 10.7 81 294-374 285-365 (371)
51 PLN03134 glycine-rich RNA-bind 99.7 7.2E-17 1.6E-21 136.4 12.9 84 292-375 32-115 (144)
52 KOG4206 Spliceosomal protein s 99.7 1.1E-16 2.4E-21 138.5 13.8 194 295-511 10-220 (221)
53 KOG0105 Alternative splicing f 99.7 1.3E-15 2.8E-20 126.3 15.0 178 293-513 5-190 (241)
54 KOG4205 RNA-binding protein mu 99.7 1.2E-16 2.6E-21 149.5 8.1 173 293-514 5-177 (311)
55 KOG1456 Heterogeneous nuclear 99.7 2.1E-14 4.5E-19 131.8 22.3 281 174-512 31-362 (494)
56 KOG1365 RNA-binding protein Fu 99.7 9.6E-16 2.1E-20 140.9 12.8 289 173-515 59-364 (508)
57 KOG1457 RNA binding protein (c 99.6 1.1E-14 2.4E-19 124.5 16.4 180 169-361 29-273 (284)
58 KOG1456 Heterogeneous nuclear 99.6 2.9E-13 6.2E-18 124.5 23.8 294 179-515 127-493 (494)
59 KOG0106 Alternative splicing f 99.6 2.1E-15 4.5E-20 132.3 8.0 165 175-370 2-167 (216)
60 KOG0106 Alternative splicing f 99.6 3.1E-15 6.6E-20 131.2 8.3 162 296-511 3-169 (216)
61 PF00076 RRM_1: RNA recognitio 99.6 7.7E-15 1.7E-19 109.0 9.3 70 297-367 1-70 (70)
62 KOG1548 Transcription elongati 99.6 5.3E-14 1.1E-18 128.4 15.0 196 173-374 133-352 (382)
63 KOG0122 Translation initiation 99.6 1.8E-14 4E-19 125.2 9.8 82 293-374 188-269 (270)
64 KOG4211 Splicing factor hnRNP- 99.5 1.4E-13 3E-18 131.6 15.3 172 292-511 8-180 (510)
65 PF14259 RRM_6: RNA recognitio 99.5 6E-14 1.3E-18 104.0 8.7 70 297-367 1-70 (70)
66 KOG0121 Nuclear cap-binding pr 99.5 5.2E-14 1.1E-18 109.7 7.7 81 292-372 34-114 (153)
67 KOG0125 Ataxin 2-binding prote 99.5 1.1E-13 2.3E-18 125.4 10.6 85 288-374 90-174 (376)
68 KOG4207 Predicted splicing fac 99.5 4.7E-14 1E-18 119.3 7.4 84 291-374 10-93 (256)
69 KOG4212 RNA-binding protein hn 99.5 6E-13 1.3E-17 124.8 15.3 206 294-509 44-290 (608)
70 KOG0132 RNA polymerase II C-te 99.5 2E-13 4.2E-18 136.9 12.6 78 170-259 417-495 (894)
71 KOG0107 Alternative splicing f 99.5 1.2E-13 2.7E-18 114.0 8.0 75 294-373 10-84 (195)
72 KOG4307 RNA binding protein RB 99.5 1.2E-11 2.6E-16 122.5 22.6 195 172-374 309-514 (944)
73 KOG0113 U1 small nuclear ribon 99.5 3.4E-13 7.3E-18 120.7 10.6 81 292-372 99-179 (335)
74 PLN03120 nucleic acid binding 99.5 3E-13 6.6E-18 122.0 10.5 76 294-373 4-79 (260)
75 KOG0149 Predicted RNA-binding 99.5 1E-13 2.2E-18 120.3 6.8 79 294-373 12-90 (247)
76 KOG0126 Predicted RNA-binding 99.5 1.5E-14 3.4E-19 119.7 1.4 80 295-374 36-115 (219)
77 KOG0114 Predicted RNA-binding 99.4 2.3E-12 4.9E-17 96.6 11.9 79 292-373 16-94 (124)
78 PLN03134 glycine-rich RNA-bind 99.4 6.5E-13 1.4E-17 112.3 9.9 68 445-515 49-116 (144)
79 KOG0130 RNA-binding protein RB 99.4 2.2E-13 4.8E-18 107.0 6.4 82 294-375 72-153 (170)
80 KOG1457 RNA binding protein (c 99.4 2.8E-12 6.1E-17 109.9 12.0 188 293-500 33-273 (284)
81 COG0724 RNA-binding proteins ( 99.4 3.6E-12 7.7E-17 123.0 13.2 80 294-373 115-194 (306)
82 PLN03213 repressor of silencin 99.4 1.5E-12 3.3E-17 123.9 9.9 76 294-373 10-87 (759)
83 smart00362 RRM_2 RNA recogniti 99.4 2.8E-12 6.1E-17 95.3 9.4 72 296-369 1-72 (72)
84 PLN03121 nucleic acid binding 99.4 3E-12 6.4E-17 113.6 10.4 76 294-373 5-80 (243)
85 PF13893 RRM_5: RNA recognitio 99.4 3.1E-12 6.6E-17 89.9 8.4 56 447-510 1-56 (56)
86 KOG4207 Predicted splicing fac 99.4 1E-12 2.2E-17 111.3 6.6 79 418-512 14-92 (256)
87 smart00360 RRM RNA recognition 99.3 4.5E-12 9.7E-17 93.9 8.6 71 299-369 1-71 (71)
88 PLN03120 nucleic acid binding 99.3 4.8E-12 1E-16 114.3 9.0 76 174-261 4-82 (260)
89 KOG1365 RNA-binding protein Fu 99.3 1.6E-12 3.5E-17 120.0 5.5 192 175-372 162-360 (508)
90 KOG0132 RNA polymerase II C-te 99.3 3E-11 6.5E-16 121.5 14.5 75 295-375 422-496 (894)
91 KOG0121 Nuclear cap-binding pr 99.3 4.7E-12 1E-16 98.9 6.4 80 169-260 31-117 (153)
92 KOG0111 Cyclophilin-type pepti 99.3 1.6E-12 3.5E-17 111.0 4.2 83 293-375 9-91 (298)
93 KOG0108 mRNA cleavage and poly 99.3 6.1E-12 1.3E-16 123.5 8.4 80 295-374 19-98 (435)
94 PF00076 RRM_1: RNA recognitio 99.3 6.6E-12 1.4E-16 93.0 6.7 66 177-252 1-70 (70)
95 cd00590 RRM RRM (RNA recogniti 99.3 3.2E-11 6.9E-16 90.1 10.3 74 296-370 1-74 (74)
96 KOG0125 Ataxin 2-binding prote 99.3 8.2E-12 1.8E-16 113.4 8.0 83 418-518 97-179 (376)
97 COG0724 RNA-binding proteins ( 99.3 2.1E-11 4.6E-16 117.6 11.1 168 174-353 115-284 (306)
98 KOG0107 Alternative splicing f 99.3 7.9E-12 1.7E-16 103.4 6.4 73 174-258 10-84 (195)
99 smart00361 RRM_1 RNA recogniti 99.3 2.7E-11 5.9E-16 89.2 8.4 61 308-368 2-69 (70)
100 smart00361 RRM_1 RNA recogniti 99.3 2.8E-11 6E-16 89.2 8.0 61 445-508 7-70 (70)
101 PF13893 RRM_5: RNA recognitio 99.2 3.4E-11 7.3E-16 84.6 7.7 56 311-371 1-56 (56)
102 KOG0149 Predicted RNA-binding 99.2 8.2E-12 1.8E-16 108.6 4.6 80 171-256 9-88 (247)
103 KOG0122 Translation initiation 99.2 4E-11 8.7E-16 104.7 8.0 81 417-513 189-269 (270)
104 KOG0126 Predicted RNA-binding 99.2 7.3E-13 1.6E-17 109.9 -2.8 90 166-261 27-117 (219)
105 PLN03121 nucleic acid binding 99.2 6.3E-11 1.4E-15 105.2 8.7 75 174-260 5-82 (243)
106 KOG0129 Predicted RNA-binding 99.2 2.1E-10 4.6E-15 111.0 12.7 154 171-355 256-432 (520)
107 PF14259 RRM_6: RNA recognitio 99.2 5.4E-11 1.2E-15 88.0 5.8 64 177-252 1-70 (70)
108 KOG0114 Predicted RNA-binding 99.1 2.3E-10 5E-15 86.0 7.7 63 445-513 33-95 (124)
109 KOG0130 RNA-binding protein RB 99.1 1E-10 2.2E-15 92.2 4.6 81 171-257 69-150 (170)
110 smart00362 RRM_2 RNA recogniti 99.1 9.1E-10 2E-14 81.6 8.4 67 176-254 1-72 (72)
111 PLN03213 repressor of silencin 99.0 4.6E-10 1E-14 107.3 8.0 73 174-258 10-87 (759)
112 KOG4208 Nucleolar RNA-binding 99.0 7.7E-10 1.7E-14 94.6 8.5 81 293-373 48-129 (214)
113 KOG4454 RNA binding protein (R 99.0 4.4E-11 9.5E-16 102.5 0.1 144 171-369 6-158 (267)
114 KOG0226 RNA-binding proteins [ 99.0 8.3E-10 1.8E-14 97.1 7.7 132 217-371 135-267 (290)
115 KOG0415 Predicted peptidyl pro 99.0 5.3E-10 1.2E-14 102.5 6.8 84 291-374 236-319 (479)
116 smart00360 RRM RNA recognition 99.0 7.5E-10 1.6E-14 81.7 6.6 62 444-508 10-71 (71)
117 KOG0111 Cyclophilin-type pepti 99.0 2E-10 4.4E-15 98.3 3.4 82 172-259 8-90 (298)
118 KOG0113 U1 small nuclear ribon 99.0 7E-09 1.5E-13 93.4 12.3 67 440-509 111-177 (335)
119 KOG4660 Protein Mei2, essentia 99.0 8.2E-09 1.8E-13 101.1 12.7 178 169-373 70-249 (549)
120 KOG4307 RNA binding protein RB 98.9 4.6E-09 1E-13 104.5 10.8 197 295-515 312-516 (944)
121 KOG0112 Large RNA-binding prot 98.9 7.2E-09 1.6E-13 106.5 12.0 161 169-376 367-533 (975)
122 KOG0108 mRNA cleavage and poly 98.9 1.4E-09 3E-14 107.0 5.9 81 175-261 19-100 (435)
123 cd00590 RRM RRM (RNA recogniti 98.9 8.4E-09 1.8E-13 76.7 8.7 68 176-255 1-74 (74)
124 KOG0128 RNA-binding protein SA 98.9 9.4E-11 2E-15 119.5 -3.0 154 169-374 662-815 (881)
125 KOG0128 RNA-binding protein SA 98.9 9.2E-11 2E-15 119.6 -3.8 234 174-509 571-811 (881)
126 KOG4208 Nucleolar RNA-binding 98.9 5.5E-09 1.2E-13 89.4 6.8 65 446-513 65-130 (214)
127 KOG4210 Nuclear localization s 98.8 2.8E-09 6E-14 100.3 4.8 176 173-374 87-264 (285)
128 KOG1996 mRNA splicing factor [ 98.8 3.2E-09 7E-14 95.0 4.4 96 418-520 279-374 (378)
129 KOG4661 Hsp27-ERE-TATA-binding 98.8 3.4E-08 7.4E-13 96.2 11.4 82 294-375 405-486 (940)
130 KOG0112 Large RNA-binding prot 98.8 3.2E-09 7E-14 109.0 3.5 158 293-512 371-530 (975)
131 KOG0153 Predicted RNA-binding 98.8 2.6E-08 5.7E-13 91.8 8.8 77 291-373 225-302 (377)
132 KOG0153 Predicted RNA-binding 98.8 1.6E-08 3.4E-13 93.2 7.1 80 167-258 221-302 (377)
133 KOG0533 RRM motif-containing p 98.7 5.2E-08 1.1E-12 88.1 9.5 85 292-377 81-165 (243)
134 KOG4454 RNA binding protein (R 98.7 3.7E-09 8E-14 90.8 1.7 159 292-515 7-176 (267)
135 KOG4660 Protein Mei2, essentia 98.7 1.4E-08 3E-13 99.5 5.1 175 294-512 75-249 (549)
136 KOG0415 Predicted peptidyl pro 98.7 1.3E-07 2.7E-12 87.2 9.9 79 418-511 239-317 (479)
137 KOG0129 Predicted RNA-binding 98.6 3.1E-07 6.7E-12 89.4 12.1 164 291-494 256-432 (520)
138 KOG0226 RNA-binding proteins [ 98.6 6.4E-08 1.4E-12 85.4 4.6 164 297-508 99-265 (290)
139 KOG4210 Nuclear localization s 98.6 4.8E-08 1E-12 92.0 4.1 177 293-513 87-264 (285)
140 PF04059 RRM_2: RNA recognitio 98.5 9.9E-07 2.1E-11 68.0 9.7 79 295-373 2-86 (97)
141 KOG4676 Splicing factor, argin 98.5 1.2E-07 2.5E-12 88.6 5.5 179 176-362 9-214 (479)
142 KOG2202 U2 snRNP splicing fact 98.5 1E-07 2.2E-12 84.7 3.1 77 437-517 75-152 (260)
143 KOG4661 Hsp27-ERE-TATA-binding 98.4 5.7E-07 1.2E-11 87.9 8.2 83 171-259 402-485 (940)
144 KOG4209 Splicing factor RNPS1, 98.4 3.3E-07 7.1E-12 83.4 5.6 80 293-373 100-179 (231)
145 KOG0151 Predicted splicing reg 98.4 1.4E-06 3E-11 87.6 8.9 84 291-374 171-257 (877)
146 KOG0116 RasGAP SH3 binding pro 98.3 1.4E-06 3E-11 85.6 7.1 79 294-373 288-366 (419)
147 KOG2193 IGF-II mRNA-binding pr 98.2 2.2E-07 4.8E-12 87.6 0.0 155 295-514 2-158 (584)
148 KOG2193 IGF-II mRNA-binding pr 98.2 8.5E-08 1.8E-12 90.3 -3.3 151 175-372 2-155 (584)
149 KOG4676 Splicing factor, argin 98.2 2.8E-06 6E-11 79.7 6.3 197 295-511 8-224 (479)
150 KOG0116 RasGAP SH3 binding pro 98.1 9.1E-06 2E-10 79.9 8.8 78 172-257 286-365 (419)
151 PF11608 Limkain-b1: Limkain b 98.1 1.4E-05 3E-10 58.4 7.2 69 295-373 3-76 (90)
152 PF04059 RRM_2: RNA recognitio 98.1 1.2E-05 2.5E-10 62.1 6.9 79 175-257 2-85 (97)
153 PF11608 Limkain-b1: Limkain b 98.0 4.6E-05 9.9E-10 55.8 8.6 62 439-513 15-77 (90)
154 KOG1995 Conserved Zn-finger pr 98.0 5.3E-06 1.2E-10 77.6 4.8 83 293-375 65-155 (351)
155 KOG0151 Predicted splicing reg 98.0 1.3E-05 2.7E-10 81.0 7.5 77 171-259 171-257 (877)
156 COG5175 MOT2 Transcriptional r 98.0 2E-05 4.2E-10 72.6 7.8 87 418-511 115-201 (480)
157 PF06495 Transformer: Fruit fl 98.0 3.8E-05 8.3E-10 63.9 8.2 16 111-126 116-131 (182)
158 PF08777 RRM_3: RNA binding mo 97.9 2.4E-05 5.3E-10 62.0 5.4 70 296-371 3-77 (105)
159 KOG0533 RRM motif-containing p 97.9 5.2E-05 1.1E-09 68.9 7.8 67 445-515 98-164 (243)
160 KOG4209 Splicing factor RNPS1, 97.7 7.9E-05 1.7E-09 68.0 6.5 68 446-517 117-184 (231)
161 KOG1996 mRNA splicing factor [ 97.6 0.00014 3.1E-09 65.8 6.8 76 297-372 284-365 (378)
162 KOG2314 Translation initiation 97.5 0.00043 9.2E-09 68.5 9.3 84 420-511 58-142 (698)
163 PF08952 DUF1866: Domain of un 97.5 0.00096 2.1E-08 55.1 9.8 61 441-513 47-107 (146)
164 COG5175 MOT2 Transcriptional r 97.5 0.00023 5E-09 65.7 6.5 81 294-374 114-203 (480)
165 KOG4849 mRNA cleavage factor I 97.5 7.3E-05 1.6E-09 69.2 3.3 78 295-372 81-160 (498)
166 KOG2314 Translation initiation 97.5 0.00041 8.9E-09 68.6 8.2 75 295-370 59-140 (698)
167 PF08777 RRM_3: RNA binding mo 97.4 0.00048 1E-08 54.6 6.3 58 445-511 16-78 (105)
168 KOG2888 Putative RNA binding p 97.4 5.7E-05 1.2E-09 69.4 1.1 11 87-97 379-389 (453)
169 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00057 1.2E-08 46.6 5.4 52 175-239 2-53 (53)
170 KOG2202 U2 snRNP splicing fact 97.3 0.00012 2.7E-09 65.4 2.3 63 309-372 83-146 (260)
171 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00075 1.6E-08 46.0 5.2 52 295-353 2-53 (53)
172 KOG0115 RNA-binding protein p5 97.2 0.001 2.2E-08 59.6 6.5 100 235-371 7-111 (275)
173 KOG3152 TBP-binding protein, a 97.2 0.0003 6.5E-09 62.8 3.0 71 295-365 75-157 (278)
174 KOG1995 Conserved Zn-finger pr 97.1 0.00054 1.2E-08 64.5 4.6 88 171-258 63-153 (351)
175 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0031 6.6E-08 49.2 7.2 71 173-255 5-88 (100)
176 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.002 4.4E-08 50.2 5.7 65 445-510 20-89 (100)
177 KOG0115 RNA-binding protein p5 96.8 0.0029 6.4E-08 56.7 5.7 92 348-500 6-97 (275)
178 KOG2548 SWAP mRNA splicing reg 96.7 0.0032 7E-08 61.9 6.0 19 180-198 555-573 (653)
179 PF08675 RNA_bind: RNA binding 96.7 0.0093 2E-07 43.9 6.8 53 297-357 11-63 (87)
180 KOG1855 Predicted RNA-binding 96.7 0.0018 4E-08 62.1 4.0 66 293-358 230-308 (484)
181 PF08952 DUF1866: Domain of un 96.6 0.0099 2.1E-07 49.3 7.3 56 309-373 51-106 (146)
182 KOG2135 Proteins containing th 96.5 0.025 5.4E-07 55.3 10.6 76 171-258 369-445 (526)
183 KOG1855 Predicted RNA-binding 96.4 0.0046 1E-07 59.5 5.0 72 418-499 229-310 (484)
184 PF04847 Calcipressin: Calcipr 96.4 0.0099 2.1E-07 52.2 6.5 62 444-514 9-72 (184)
185 PF10309 DUF2414: Protein of u 96.4 0.024 5.2E-07 39.6 7.0 55 294-356 5-62 (62)
186 KOG2416 Acinus (induces apopto 96.3 0.0045 9.7E-08 61.9 4.4 76 292-373 442-521 (718)
187 KOG4849 mRNA cleavage factor I 96.0 0.0074 1.6E-07 56.3 4.1 78 173-254 79-157 (498)
188 KOG2416 Acinus (induces apopto 95.9 0.0068 1.5E-07 60.7 3.6 82 416-516 440-525 (718)
189 KOG3263 Nucleic acid binding p 95.7 0.0015 3.3E-08 54.3 -1.5 10 189-198 141-150 (196)
190 KOG3152 TBP-binding protein, a 95.7 0.0075 1.6E-07 54.1 2.6 77 419-505 73-158 (278)
191 KOG2591 c-Mpl binding protein, 95.6 0.037 8E-07 55.2 7.4 69 295-370 176-248 (684)
192 KOG2068 MOT2 transcription fac 95.5 0.0067 1.4E-07 56.9 1.5 64 448-511 98-161 (327)
193 PF15023 DUF4523: Protein of u 95.4 0.064 1.4E-06 43.8 6.7 55 445-510 105-159 (166)
194 KOG1847 mRNA splicing factor [ 95.3 0.0099 2.2E-07 60.0 2.3 12 177-188 848-859 (878)
195 PF15023 DUF4523: Protein of u 94.8 0.1 2.2E-06 42.6 6.2 71 295-373 87-161 (166)
196 PF07576 BRAP2: BRCA1-associat 94.6 0.42 9.1E-06 38.1 9.4 66 296-363 15-81 (110)
197 PF08675 RNA_bind: RNA binding 94.6 0.24 5.3E-06 36.6 7.2 57 418-496 7-63 (87)
198 KOG2068 MOT2 transcription fac 94.5 0.015 3.4E-07 54.6 1.3 81 295-375 78-164 (327)
199 PF10567 Nab6_mRNP_bdg: RNA-re 94.2 2.5 5.4E-05 39.4 14.5 180 295-498 16-214 (309)
200 KOG4285 Mitotic phosphoprotein 94.2 0.091 2E-06 48.5 5.2 54 446-509 212-266 (350)
201 KOG2135 Proteins containing th 93.8 0.041 8.8E-07 53.9 2.5 58 445-512 388-445 (526)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 93.5 0.069 1.5E-06 46.9 3.3 80 294-373 7-97 (176)
203 PF07576 BRAP2: BRCA1-associat 93.0 0.69 1.5E-05 36.9 7.9 52 446-502 29-81 (110)
204 PF04847 Calcipressin: Calcipr 92.9 0.28 6E-06 43.2 6.0 61 307-373 8-70 (184)
205 KOG4285 Mitotic phosphoprotein 92.8 0.69 1.5E-05 42.9 8.5 69 174-255 197-266 (350)
206 KOG4574 RNA-binding protein (c 92.5 0.097 2.1E-06 55.0 3.1 75 296-376 300-376 (1007)
207 PF10309 DUF2414: Protein of u 92.3 0.84 1.8E-05 32.0 6.5 54 175-239 6-59 (62)
208 KOG0804 Cytoplasmic Zn-finger 91.4 0.9 2E-05 44.7 8.0 68 294-363 74-142 (493)
209 KOG2591 c-Mpl binding protein, 91.4 0.54 1.2E-05 47.3 6.6 70 418-507 173-246 (684)
210 KOG2891 Surface glycoprotein [ 91.2 0.31 6.7E-06 44.4 4.4 84 291-374 146-268 (445)
211 KOG2891 Surface glycoprotein [ 90.8 0.34 7.3E-06 44.1 4.2 76 417-500 156-247 (445)
212 KOG2253 U1 snRNP complex, subu 90.7 0.29 6.2E-06 50.4 4.1 69 171-254 37-106 (668)
213 PF03880 DbpA: DbpA RNA bindin 90.6 1.4 3E-05 32.4 6.8 59 304-371 11-74 (74)
214 KOG4574 RNA-binding protein (c 90.5 0.21 4.5E-06 52.7 3.1 72 437-517 305-378 (1007)
215 KOG0670 U4/U6-associated splic 90.1 0.23 4.9E-06 50.0 2.8 10 311-320 520-529 (752)
216 KOG0804 Cytoplasmic Zn-finger 89.7 0.52 1.1E-05 46.2 4.8 67 418-502 75-142 (493)
217 PF07292 NID: Nmi/IFP 35 domai 89.4 0.67 1.5E-05 35.1 4.2 72 225-316 1-74 (88)
218 KOG2253 U1 snRNP complex, subu 89.1 0.46 1E-05 48.9 4.1 71 292-371 38-108 (668)
219 KOG4246 Predicted DNA-binding 87.2 0.29 6.4E-06 51.4 1.5 6 478-483 972-977 (1194)
220 PF11767 SET_assoc: Histone ly 86.3 1.6 3.4E-05 31.2 4.3 51 445-507 15-65 (66)
221 KOG2812 Uncharacterized conser 85.8 4.1 9E-05 38.8 8.0 14 339-352 364-377 (426)
222 PF03467 Smg4_UPF3: Smg-4/UPF3 84.9 0.43 9.4E-06 41.9 1.2 67 173-248 6-82 (176)
223 KOG2318 Uncharacterized conser 82.0 14 0.00031 37.8 10.5 135 170-373 170-307 (650)
224 KOG1882 Transcriptional regula 81.6 1.5 3.4E-05 39.3 3.3 13 335-347 215-227 (293)
225 PF11767 SET_assoc: Histone ly 80.3 7.3 0.00016 27.8 5.7 55 305-368 11-65 (66)
226 PF15513 DUF4651: Domain of un 80.1 4.4 9.6E-05 28.2 4.4 28 441-468 5-32 (62)
227 PF03880 DbpA: DbpA RNA bindin 79.4 5.8 0.00012 29.1 5.3 53 446-510 17-74 (74)
228 PF02956 TT_ORF1: TT viral orf 73.0 3.2 6.8E-05 43.3 3.2 6 250-255 207-212 (525)
229 PF14111 DUF4283: Domain of un 67.2 4.6 0.0001 34.4 2.6 120 175-328 16-139 (153)
230 KOG4410 5-formyltetrahydrofola 67.0 31 0.00067 32.0 7.7 46 295-346 331-377 (396)
231 KOG4019 Calcineurin-mediated s 66.2 6.4 0.00014 34.0 3.0 58 446-512 31-89 (193)
232 KOG4410 5-formyltetrahydrofola 61.1 24 0.00052 32.7 5.9 49 175-234 331-379 (396)
233 KOG4019 Calcineurin-mediated s 59.1 11 0.00023 32.7 3.2 75 294-374 10-90 (193)
234 PF03468 XS: XS domain; Inter 58.9 16 0.00034 29.5 4.0 52 295-349 9-69 (116)
235 KOG4483 Uncharacterized conser 57.7 25 0.00055 34.3 5.7 56 293-355 390-446 (528)
236 KOG3869 Uncharacterized conser 52.8 9 0.0002 37.5 2.0 12 186-197 361-372 (450)
237 PF07530 PRE_C2HC: Associated 45.6 49 0.0011 23.8 4.4 61 445-511 2-63 (68)
238 PF07530 PRE_C2HC: Associated 45.6 58 0.0013 23.4 4.7 62 309-373 2-64 (68)
239 smart00596 PRE_C2HC PRE_C2HC d 44.6 44 0.00095 24.0 3.9 62 309-373 2-64 (69)
240 smart00596 PRE_C2HC PRE_C2HC d 43.5 47 0.001 23.8 3.9 59 446-510 3-62 (69)
241 PRK11901 hypothetical protein; 40.4 33 0.00072 32.9 3.6 64 418-497 243-306 (327)
242 KOG0334 RNA helicase [RNA proc 39.5 11 0.00025 41.5 0.5 8 241-248 350-357 (997)
243 KOG3580 Tight junction protein 38.8 49 0.0011 34.3 4.7 11 437-447 766-776 (1027)
244 KOG4365 Uncharacterized conser 38.7 5.7 0.00012 39.1 -1.7 77 295-372 4-80 (572)
245 PF11671 Apis_Csd: Complementa 38.6 3.6 7.8E-05 33.0 -2.5 14 124-137 84-97 (146)
246 KOG4213 RNA-binding protein La 37.6 92 0.002 27.1 5.4 52 445-501 124-175 (205)
247 KOG2295 C2H2 Zn-finger protein 36.5 5.5 0.00012 40.5 -2.2 72 294-365 231-302 (648)
248 KOG1134 Uncharacterized conser 36.4 45 0.00097 36.5 4.4 43 475-517 305-347 (728)
249 PF15513 DUF4651: Domain of un 36.1 90 0.002 21.9 4.2 18 309-326 9-26 (62)
250 KOG4483 Uncharacterized conser 34.7 94 0.002 30.6 5.6 57 174-242 391-447 (528)
251 PRK03717 ribonuclease P protei 33.7 1.6E+02 0.0036 23.9 6.2 68 431-507 26-97 (120)
252 PRK14548 50S ribosomal protein 32.6 2.2E+02 0.0047 21.5 6.7 57 297-356 23-81 (84)
253 KOG2318 Uncharacterized conser 32.2 64 0.0014 33.4 4.3 39 476-514 269-309 (650)
254 PRK12678 transcription termina 32.1 90 0.0019 33.1 5.4 10 362-371 501-510 (672)
255 PF11823 DUF3343: Protein of u 31.8 77 0.0017 23.0 3.7 27 477-503 3-29 (73)
256 KOG1295 Nonsense-mediated deca 30.5 46 0.001 32.6 2.9 67 295-361 8-77 (376)
257 KOG1295 Nonsense-mediated deca 30.5 31 0.00067 33.7 1.8 70 174-247 7-78 (376)
258 PF14893 PNMA: PNMA 30.4 42 0.00091 32.7 2.7 77 292-373 16-96 (331)
259 PRK08559 nusG transcription an 30.1 1.5E+02 0.0033 25.2 5.9 48 442-497 20-68 (153)
260 KOG0334 RNA helicase [RNA proc 29.9 20 0.00043 39.8 0.4 8 485-492 623-630 (997)
261 PF08156 NOP5NT: NOP5NT (NUC12 28.6 22 0.00048 25.5 0.3 38 446-496 28-65 (67)
262 KOG4365 Uncharacterized conser 28.2 18 0.00038 35.8 -0.3 65 445-513 18-82 (572)
263 PF03439 Spt5-NGN: Early trans 28.0 94 0.002 23.3 3.7 37 456-500 33-69 (84)
264 COG1098 VacB Predicted RNA bin 27.9 1.5E+02 0.0031 24.2 4.8 37 478-514 21-65 (129)
265 PRK11901 hypothetical protein; 27.8 1.2E+02 0.0026 29.2 5.1 59 294-357 245-305 (327)
266 cd06398 PB1_Joka2 The PB1 doma 27.4 2.9E+02 0.0062 21.2 6.9 61 437-508 24-85 (91)
267 COG5594 Uncharacterized integr 27.4 61 0.0013 35.2 3.4 43 475-517 357-400 (827)
268 cd04908 ACT_Bt0572_1 N-termina 26.6 2.3E+02 0.0049 19.7 6.5 46 445-498 16-62 (66)
269 PTZ00191 60S ribosomal protein 26.2 2.9E+02 0.0062 23.3 6.4 55 297-354 84-140 (145)
270 COG1369 POP5 RNase P/RNase MRP 25.9 3.7E+02 0.008 22.0 7.1 81 423-509 18-99 (124)
271 PRK12678 transcription termina 25.8 1.2E+02 0.0027 32.1 5.1 12 188-199 325-336 (672)
272 TIGR03636 L23_arch archaeal ri 25.2 2.9E+02 0.0062 20.5 6.7 57 297-356 16-74 (77)
273 PF09162 Tap-RNA_bind: Tap, RN 25.0 2.8E+02 0.006 21.2 5.6 57 440-509 20-79 (88)
274 PF08544 GHMP_kinases_C: GHMP 24.4 2.4E+02 0.0052 20.6 5.5 44 445-496 37-80 (85)
275 PF08442 ATP-grasp_2: ATP-gras 23.6 1.1E+02 0.0025 27.4 4.0 67 446-518 29-105 (202)
276 PF14111 DUF4283: Domain of un 23.4 48 0.001 28.0 1.6 62 439-512 30-91 (153)
277 cd04883 ACT_AcuB C-terminal AC 22.9 2.7E+02 0.0059 19.4 6.7 50 445-500 16-68 (72)
278 COG4010 Uncharacterized protei 22.7 2.6E+02 0.0057 23.3 5.4 47 301-357 118-164 (170)
279 KOG4008 rRNA processing protei 20.6 92 0.002 28.4 2.7 31 294-324 40-70 (261)
No 1
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=9.4e-61 Score=498.53 Aligned_cols=395 Identities=44% Similarity=0.684 Sum_probs=293.1
Q ss_pred CCCCCCCCCCccCCCCCCC----CCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCcccccchhhhcccceeEEeCCCcc
Q 009944 110 RRSGFDMAPPAAAMLPGAA----VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPL 185 (522)
Q Consensus 110 ~~~~~d~~~~~~~~~~~~~----~~g~~p~~~p~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~ 185 (522)
+...|+.+++++..+...+ ....+|+..+ .|++.+...... ....+..++...+.+..+...++|||+|||+.
T Consensus 110 ~~~~~d~~p~~~~~~~~~~~~~~~~~~~p~~~~-~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~lyVgnLp~~ 186 (509)
T TIGR01642 110 KRSLWDIKPPGYELVTADQAKASQVFSVPGTAP-RPAMTDPEKLLA--EGSIITPLPVLPYQQQATRQARRLYVGGIPPE 186 (509)
T ss_pred cccccccCCCcccccchHHHhhccccCCCCCCC-CCCCCCcccccc--cccccCCccccccCccCCccccEEEEeCCCCC
Confidence 4556888888776655432 1113333222 223222222111 11111122222345567788899999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEEEecCCCCCccccc
Q 009944 186 ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265 (522)
Q Consensus 186 ~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~v~~~~~~~~~~~~ 265 (522)
+|+++|.++|..++...+.....++.+|..+.+...+|||||+|.+.++|+.||+|+|+.|.|+.|+|.++..+......
T Consensus 187 ~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~ 266 (509)
T TIGR01642 187 FVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQI 266 (509)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCcccc
Confidence 99999999999998877765555577899999999999999999999999999999999999999999988877643222
Q ss_pred cCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcC
Q 009944 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345 (522)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~ 345 (522)
........+....................++|||+|||..+++++|.++|+.||.|..+.|+.+..+|.++|||||+|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 346 (509)
T TIGR01642 267 TPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKD 346 (509)
T ss_pred CCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECC
Confidence 11111111111111111111222234566899999999999999999999999999999999998899999999999999
Q ss_pred hHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHH-HHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEE
Q 009944 346 PAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI-LAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLC 424 (522)
Q Consensus 346 ~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~ 424 (522)
.++|..||..|+|..|+|+.|.|.++.............. .......... ..........++.|++
T Consensus 347 ~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~s~v~~ 413 (509)
T TIGR01642 347 PSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKAL-------------SQSILQIGGKPTKVVQ 413 (509)
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccc-------------hhhhccccCCCceEEE
Confidence 9999999999999999999999999876543322211110 0000000000 0000112236789999
Q ss_pred eeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeE
Q 009944 425 LTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNT 504 (522)
Q Consensus 425 l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~ 504 (522)
|.|+++.++|.++.+|++|.++|+++|++||.|+.|.|+++..++....|+|+|||+|.++++|.+||.+|||+.|+|++
T Consensus 414 l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~ 493 (509)
T TIGR01642 414 LTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRV 493 (509)
T ss_pred eccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 99999999999999999999999999999999999999987555555577899999999999999999999999999999
Q ss_pred EEEEEeCCcccccccC
Q 009944 505 VNAFYYPEDKYFNKDY 520 (522)
Q Consensus 505 l~v~~~~~~~~~~~~~ 520 (522)
|.|.|++++.|.++.|
T Consensus 494 v~~~~~~~~~~~~~~~ 509 (509)
T TIGR01642 494 VVAAFYGEDCYKAGDY 509 (509)
T ss_pred EEEEEeCHHHhhccCC
Confidence 9999999999999987
No 2
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.7e-51 Score=422.89 Aligned_cols=318 Identities=26% Similarity=0.409 Sum_probs=237.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCce
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 250 (522)
....++|||+|||..+++++|+++|..||.|... .++.+..++.++|||||+|.+.++|.+||.++|..|.|++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v------~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~ 159 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDV------QCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRP 159 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEE------EEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCee
Confidence 4456799999999999999999999999975321 1122233466799999999999999999999999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~ 330 (522)
|.|.++........... ...........+|||+|||..+++++|.++|++||.|..|.|+.++
T Consensus 160 i~v~~~~~~~~~~~~~~-----------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAA-----------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred eEEeecchhhhhhhhcc-----------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 99986543221110000 0000011225789999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHH-----------HHHHHHHHHHHHHHH
Q 009944 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES-----------ILAQAQQHIAIQKMA 399 (522)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 399 (522)
.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+............. ..........++.+.
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLD 302 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhc
Confidence 899999999999999999999999999999999999999976432111000000 000000000011100
Q ss_pred hhc--cCC-----------------------ccC--------------CCCcCCCCCCcceEEEeeCCCCcCcCCChHHH
Q 009944 400 LQT--SGM-----------------------NTL--------------GGGMSLFGETLAKVLCLTEAITADALADDEEY 440 (522)
Q Consensus 400 ~~~--~~~-----------------------~~~--------------g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~ 440 (522)
... ... ..+ ....+.....++.|++|.|++++.++..+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 303 RDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred cCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 000 000 000 00001113367889999999999998999999
Q ss_pred HHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcccccc
Q 009944 441 EEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNK 518 (522)
Q Consensus 441 ~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~~~~ 518 (522)
+++++||+++|++||.|+.|.|.... ..|+|||+|.++++|.+|+++|||+.|+|+.|.+.|++++.|...
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~~-------~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~ 453 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTKN-------SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMS 453 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCCC-------CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhh
Confidence 99999999999999999999997532 248899999999999999999999999999999999999988653
No 3
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-47 Score=370.32 Aligned_cols=387 Identities=46% Similarity=0.770 Sum_probs=314.3
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCC--------CCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCcccccchhhhc
Q 009944 101 PSRSPSKSKRRSGFDMAPPAAAMLPGA--------AVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATR 172 (522)
Q Consensus 101 rs~~~~r~r~~~~~d~~~~~~~~~~~~--------~~~g~~p~~~p~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (522)
+++++...+....|+.++++++..++. .+.|+.|+......... ..+..|.+.+..+.+.
T Consensus 106 ~~~~~~~~r~~~~~~~~~~~fe~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~t~ 173 (500)
T KOG0120|consen 106 RSRSRRYSRKRSLWDVPPEGFETITPDGAKLYKNFNATGQVPGDLSNPKKSL------------KLPQLPTPPMDSQATR 173 (500)
T ss_pred cccccccccchhhhcCCCCCCcccCchhhhhhhhccccCCCCCCcccccccc------------ccccCCCCccCcchhh
Confidence 344455566778899999999887772 23444443321111100 0333445556677888
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~ 252 (522)
..+.++|+++|+.++++.+..+|..-..+.+++....+..+..+.++..++|||++|.+.++|..|+.+++..+.|.+++
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~ 253 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLK 253 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCCce
Confidence 89999999999999999999999999888898887778899999999999999999999999999999999999999999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 009944 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (522)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~ 332 (522)
+..+..+...........+ +...+...........+..+||++||..+++.++.++...||.+....++.+..+
T Consensus 254 ~~r~~d~~~~p~~~~~~~~------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 254 IRRPHDYQPVPGITLSPSQ------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred ecccccccCCccchhhhcc------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 9988887765544443333 2233444455566777889999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCc
Q 009944 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGM 412 (522)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 412 (522)
|.++||||++|.+......|+..|||..+++..|.|..|............ ..+.+...+....
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~---~~~~~~~~i~~~~------------- 391 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN---ISQSQVPGIPLLM------------- 391 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC---ccccccccchhhh-------------
Confidence 999999999999999999999999999999999999998765433333222 0000001111111
Q ss_pred CCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHH
Q 009944 413 SLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 492 (522)
Q Consensus 413 ~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai 492 (522)
-.....++.|++|.|++++++|.++++|++|.++|+..|.+||.|..|.|+++..++.+..|.|.+||+|++.++|++|+
T Consensus 392 ~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~ 471 (500)
T KOG0120|consen 392 TQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAM 471 (500)
T ss_pred cccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHH
Confidence 12234889999999999999999999999999999999999999999999999667777889999999999999999999
Q ss_pred HHHhCCccCCeEEEEEEeCCcccccccCC
Q 009944 493 NALSGRKFGGNTVNAFYYPEDKYFNKDYS 521 (522)
Q Consensus 493 ~~lng~~~~Gr~l~v~~~~~~~~~~~~~~ 521 (522)
++|+|++|+||+|.++|+++++|.+++|+
T Consensus 472 ~~L~GrKF~nRtVvtsYydeDkY~~r~~~ 500 (500)
T KOG0120|consen 472 EELTGRKFANRTVVASYYDEDKYHAREFE 500 (500)
T ss_pred HHccCceeCCcEEEEEecCHHHhhccccC
Confidence 99999999999999999999999999985
No 4
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=2.2e-43 Score=337.21 Aligned_cols=320 Identities=26% Similarity=0.371 Sum_probs=240.3
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecC
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 248 (522)
..+...++||+.-|+..+++-+|.+||+.+|+|.+ +.+|.+-....++|.|||+|.+.+....|+.|.|+.+.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrd------VriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg 247 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRD------VRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLG 247 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcce------eEeeccccchhhcceeEEEEecccchhhHhhhcCCcccC
Confidence 35667889999999999999999999999998532 333444555678999999999999999999999999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCe-EEEcCCCCCCCHHHHHHHHHhcCCceEEEEe
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR-VFVGGLPYYFTETQIKELLESFGTLHGFDLV 327 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~ 327 (522)
.+|.|+.+...... .+..++. ........+.. |||+||.+++++++|+.+|++||.|..|.++
T Consensus 248 ~pv~vq~sEaeknr-~a~~s~a---------------~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~ 311 (549)
T KOG0147|consen 248 VPVIVQLSEAEKNR-AANASPA---------------LQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLT 311 (549)
T ss_pred ceeEecccHHHHHH-HHhcccc---------------ccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeec
Confidence 99999864322111 1110000 00011122233 9999999999999999999999999999999
Q ss_pred eCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchH-----HH----HHHH--HHHHHHHHH
Q 009944 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTE-----QE----SILA--QAQQHIAIQ 396 (522)
Q Consensus 328 ~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~-----~~----~~~~--~~~~~~~~~ 396 (522)
++.+||.++||+||+|.+.++|.+|+..|||+.|.|+.|+|...+......... .+ ..+. ..-....+.
T Consensus 312 ~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~ 391 (549)
T KOG0147|consen 312 KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMA 391 (549)
T ss_pred cccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHH
Confidence 998899999999999999999999999999999999999998766543222110 00 0000 000000111
Q ss_pred HHHhhc--------------------cCCccCCCCcCC-CCC-------CcceEEEeeCCCCcCcCCChHHHHHHHHHHH
Q 009944 397 KMALQT--------------------SGMNTLGGGMSL-FGE-------TLAKVLCLTEAITADALADDEEYEEILEDMR 448 (522)
Q Consensus 397 ~~~~~~--------------------~~~~~~g~~~~~-~~~-------~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~ 448 (522)
++.... .....+++.+.. .+. .++.|+.|.|++++.+.....|-.+|.+||.
T Consensus 392 kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~ 471 (549)
T KOG0147|consen 392 KLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVI 471 (549)
T ss_pred HHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHH
Confidence 110000 000001111111 111 6788999999999999999999999999999
Q ss_pred HHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcccccc
Q 009944 449 EECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNK 518 (522)
Q Consensus 449 ~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~~~~ 518 (522)
+.|++||+|..|.+.+.. .|++||.|.+.+.|..|+.+|||++|.|+.|.+.|++...|...
T Consensus 472 Eec~k~g~v~hi~vd~ns--------~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~ 533 (549)
T KOG0147|consen 472 EECGKHGKVCHIFVDKNS--------AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSK 533 (549)
T ss_pred HHHHhcCCeeEEEEccCC--------CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhh
Confidence 999999999999997754 38999999999999999999999999999999999999887653
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=7.8e-42 Score=345.10 Aligned_cols=323 Identities=26% Similarity=0.375 Sum_probs=236.9
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+.+++++|+++|..||.|..+. ++.+..+++++|||||+|.+.++|..|+ .|||..|.|+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~------I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR 177 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSIN------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 177 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEE------EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc
Confidence 35678999999999999999999999999864321 2333345778999999999999999999 6999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeC
Q 009944 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (522)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~ 329 (522)
.|+|.++....... + ... .........++|||+|||+.+++++|+++|+.||.|..+.|+.+
T Consensus 178 ~IkV~rp~~~p~a~--------~--~~~--------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D 239 (612)
T TIGR01645 178 NIKVGRPSNMPQAQ--------P--IID--------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA 239 (612)
T ss_pred eeeecccccccccc--------c--ccc--------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec
Confidence 99998754332110 0 000 00011223468999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCc--------h-HHHH----HHHHHHHHHHHH
Q 009944 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK--------T-EQES----ILAQAQQHIAIQ 396 (522)
Q Consensus 330 ~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~--------~-~~~~----~~~~~~~~~~~~ 396 (522)
+.+|.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++..+..... + .... .....+......
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~pa~~~~~p~aaa~Aaaaa~a~~~a~~~~~ 319 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVA 319 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCCCCCCCCCchHHHHHHHHhhhhhhhhhhhh
Confidence 98999999999999999999999999999999999999999876432210 0 0000 000000000000
Q ss_pred H-HHhh------------------------------------------------c---cCCccCC-----------CCcC
Q 009944 397 K-MALQ------------------------------------------------T---SGMNTLG-----------GGMS 413 (522)
Q Consensus 397 ~-~~~~------------------------------------------------~---~~~~~~g-----------~~~~ 413 (522)
. .... . .+...+| ...|
T Consensus 320 ~~a~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (612)
T TIGR01645 320 GAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAP 399 (612)
T ss_pred cccccccccCCCccccccccccccccccccccCCcccCCCCCccccccccCCCCcccccCCCCccccccccCCCccccCC
Confidence 0 0000 0 0000000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 009944 414 -------------------------------------------------------------------------------- 413 (522)
Q Consensus 414 -------------------------------------------------------------------------------- 413 (522)
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (612)
T TIGR01645 400 TEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEKEGEELQPKLV 479 (612)
T ss_pred CcCchhhhcCcccccccccccccccccccchhccccchhhhhhhhhhhcccchhhHHHHhhhhhHHhhhhhhhhhccccc
Confidence
Q ss_pred ----------------------------CCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCC
Q 009944 414 ----------------------------LFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRP 465 (522)
Q Consensus 414 ----------------------------~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~ 465 (522)
...+..++|++|.|+++.+++. +++++||++.|++||.|++|.|...
T Consensus 480 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~rp~~S~vVvL~NMv~~~eld-----edl~eDV~eEC~K~G~V~~v~I~~~ 554 (612)
T TIGR01645 480 MNSEDASLASQEGMSIRGNSARHLVMQKLMRTNRSNVIVLRNMVTPQDID-----EFLEGEIREECGKFGVVDRVIINFE 554 (612)
T ss_pred ccccccccccccccccccchhhHHHHHhhcCCCCCCEEEEeCCCChHHhH-----HHHHHHHHHHhhcCceeEEEEEecC
Confidence 0012357899999999988653 4577899999999999999999875
Q ss_pred CCC-CCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcccccccCCC
Q 009944 466 DQN-GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 522 (522)
Q Consensus 466 ~~~-g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~~~~~~~~ 522 (522)
... ...-.+.|.+||+|.+.++|.+|+..|||++|+||+|.+.|+++.+|..++|+.
T Consensus 555 ~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~f~~~~l~~ 612 (612)
T TIGR01645 555 KQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQILFDHADLSG 612 (612)
T ss_pred CCCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHHhhccccCC
Confidence 422 111123567899999999999999999999999999999999999999999974
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.3e-42 Score=340.37 Aligned_cols=289 Identities=20% Similarity=0.277 Sum_probs=211.7
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEE
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~ 252 (522)
..+|||+|||+.+|+++|+++|..||+|..+. ++.+...+.++|||||+|.+.++|.+|+ .|+|..|.|++|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~------i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~ 76 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCK------LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIK 76 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEE------EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEE
Confidence 56899999999999999999999999864321 1223334678899999999999999999 6999999999999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 009944 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (522)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~ 332 (522)
|.++..... .....+|||+|||..+++++|.++|+.||.|..+.++.+..+
T Consensus 77 v~~a~~~~~-----------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 127 (352)
T TIGR01661 77 VSYARPSSD-----------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVT 127 (352)
T ss_pred EEeeccccc-----------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCC
Confidence 987543221 112357999999999999999999999999999999998888
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCccCC--eEEEEEEccCCCCCCchHHHHHHHHH---------------------
Q 009944 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASSGQSKTEQESILAQA--------------------- 389 (522)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~~~~~~~~~~~~~~~~--------------------- 389 (522)
+.++|||||+|.+.++|+.|++.|||..+.| .+|.|.++..................
T Consensus 128 ~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T TIGR01661 128 GLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGP 207 (352)
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCC
Confidence 9999999999999999999999999998877 67899998755421110000000000
Q ss_pred -------------------HHHHHHHHHHh-----hccCCcc--------CCCCcCCCCCC---cceEEEeeCCCCcCcC
Q 009944 390 -------------------QQHIAIQKMAL-----QTSGMNT--------LGGGMSLFGET---LAKVLCLTEAITADAL 434 (522)
Q Consensus 390 -------------------~~~~~~~~~~~-----~~~~~~~--------~g~~~~~~~~~---~~~v~~l~~~~~~~~l 434 (522)
........... ....... .+...+. ... .+.|.+|+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lfV~NL~~~~----- 281 (352)
T TIGR01661 208 MHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAA-SDGAGYCIFVYNLSPDT----- 281 (352)
T ss_pred ccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCC-CCCCCcEEEEeCCCCCC-----
Confidence 00000000000 0000000 0000000 011 13333333332
Q ss_pred CChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 435 ADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 435 ~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
.+++|.++|++||.|+.|+|+.+..++.. +|+|||+|.+.++|.+||++|||..|+|+.|+|.|++...
T Consensus 282 --------~e~~L~~~F~~fG~v~~v~i~~d~~t~~s---kG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 282 --------DETVLWQLFGPFGAVQNVKIIRDLTTNQC---KGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred --------CHHHHHHHHHhCCCeEEEEEeEcCCCCCc---cceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 23599999999999999999999877765 7888999999999999999999999999999999988654
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.7e-37 Score=265.14 Aligned_cols=292 Identities=18% Similarity=0.265 Sum_probs=221.5
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
.+....|.|.-||..+|+++|+.+|...|+|.++. .|.+..++++-||+||.|-+++||++|+ .+||..+..+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScK------LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K 111 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCK------LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK 111 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeee------eeeccccccccccceeeecChHHHHHHHhhhcceeeccc
Confidence 44556799999999999999999999999986655 4888899999999999999999999999 7999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeC
Q 009944 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (522)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~ 329 (522)
.|+|.++.+.... .....|||.+||...|..+|.++|++||.|..-+|..|
T Consensus 112 TIKVSyARPSs~~-----------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~d 162 (360)
T KOG0145|consen 112 TIKVSYARPSSDS-----------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVD 162 (360)
T ss_pred eEEEEeccCChhh-----------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhh
Confidence 9999987654322 22348999999999999999999999999988888888
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC--eEEEEEEccCCCCCCchHH-HHH-----------HHHHHHHH--
Q 009944 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASSGQSKTEQ-ESI-----------LAQAQQHI-- 393 (522)
Q Consensus 330 ~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~~~~~~~~~-~~~-----------~~~~~~~~-- 393 (522)
..+|.++|.+||.|...++|+.||+.|||.+-.| .+|.|+|+..+........ .+. +....+..
T Consensus 163 qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~ 242 (360)
T KOG0145|consen 163 QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRL 242 (360)
T ss_pred cccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhcc
Confidence 8899999999999999999999999999988766 6799999987643221110 000 00000000
Q ss_pred ----HHHHHHhhccCCccC------CCCcCCCCC--CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEE
Q 009944 394 ----AIQKMALQTSGMNTL------GGGMSLFGE--TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVV 461 (522)
Q Consensus 394 ----~~~~~~~~~~~~~~~------g~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~ 461 (522)
.+........++... |...|..+. -+++|++|....++ .-|-++|.+||.|.+|+
T Consensus 243 ~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de-------------~~LWQlFgpFGAv~nVK 309 (360)
T KOG0145|consen 243 DNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADE-------------SILWQLFGPFGAVTNVK 309 (360)
T ss_pred ccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchH-------------hHHHHHhCcccceeeEE
Confidence 000001111111111 112222222 22344444333222 36889999999999999
Q ss_pred ecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 462 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 462 i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
|++|..+. +++||+||.+.+-++|..||..|||..++++.|.|+|-+.+
T Consensus 310 virD~ttn---kCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 310 VIRDFTTN---KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEecCCcc---cccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99998664 45788899999999999999999999999999999997653
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.3e-36 Score=317.67 Aligned_cols=273 Identities=20% Similarity=0.316 Sum_probs=211.2
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEE
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~ 252 (522)
..+|||+|||.++++++|+++|+.||.|..+. |.....++++|||||+|.+.++|..|+ ++++..+.|+.|.
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~-------i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCK-------VATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeE-------eeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 45799999999999999999999999865321 222234568999999999999999999 7999999999999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 009944 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (522)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~ 332 (522)
|.......... .......++|||+|||.++|+++|+++|+.||.|..+.++.+. +
T Consensus 161 v~~~~~~~~~~------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~ 215 (562)
T TIGR01628 161 VGRFIKKHERE------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-S 215 (562)
T ss_pred Eeccccccccc------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-C
Confidence 97543322110 0012334689999999999999999999999999999999984 7
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCccC----CeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccC
Q 009944 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMG----DKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408 (522)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~----g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (522)
|.++|||||+|.+.++|.+|++.|+|..|. |+.|.|.++..+.. ....+.............
T Consensus 216 g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e-----r~~~~~~~~~~~~~~~~~--------- 281 (562)
T TIGR01628 216 GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE-----REAELRRKFEELQQERKM--------- 281 (562)
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh-----hHHHHHhhHHhhhhhhhc---------
Confidence 899999999999999999999999999999 99999998865321 111111111111110000
Q ss_pred CCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhH
Q 009944 409 GGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGC 488 (522)
Q Consensus 409 g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A 488 (522)
........|.+|+..+++ ++|+++|++||.|.+|+|+.+. +|.. +|+|||+|.+.++|
T Consensus 282 -----~~~~~~l~V~nl~~~~~~-------------~~L~~~F~~~G~i~~~~i~~d~-~g~~---~g~gfV~f~~~~~A 339 (562)
T TIGR01628 282 -----KAQGVNLYVKNLDDTVTD-------------EKLRELFSECGEITSAKVMLDE-KGVS---RGFGFVCFSNPEEA 339 (562)
T ss_pred -----ccCCCEEEEeCCCCccCH-------------HHHHHHHHhcCCeEEEEEEECC-CCCc---CCeEEEEeCCHHHH
Confidence 001133445555554444 4999999999999999999984 5543 68889999999999
Q ss_pred HHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 489 ATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 489 ~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
.+|+..|||..|+|++|.|.|+..+.
T Consensus 340 ~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 340 NRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999999999999999988643
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.7e-36 Score=306.47 Aligned_cols=242 Identities=19% Similarity=0.295 Sum_probs=189.8
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceec-Cce
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE-GVA 250 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~-g~~ 250 (522)
..++|||+|||.++++++|+++|.+||.|..+. ++.+ ..+.++|||||+|.+.++|++|| .||+..|. |+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vr------l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~ 129 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELR------LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL 129 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEE------EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc
Confidence 357999999999999999999999999864321 1223 45788999999999999999999 69998885 677
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEE-ee
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDL-VK 328 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~~-~~ 328 (522)
|.|.++. ..++|||+|||..+++++|.++|++++. +..+.+ ..
T Consensus 130 l~V~~S~-----------------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~ 174 (578)
T TIGR01648 130 LGVCISV-----------------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS 174 (578)
T ss_pred ccccccc-----------------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc
Confidence 7776421 1358999999999999999999999864 444433 33
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHHcC--CccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCc
Q 009944 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMN 406 (522)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (522)
....++++|||||+|.+.++|.+|+..|+. ..+.|+.|.|.|+.+....... .
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~-------------~------------ 229 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED-------------V------------ 229 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc-------------c------------
Confidence 334678899999999999999999998864 4678999999999764211100 0
Q ss_pred cCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhcc--CCeEEEEecCCCCCCCCCCCccEEEEEecC
Q 009944 407 TLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY--GTLVNVVIPRPDQNGGETPGVGKVFLEYYD 484 (522)
Q Consensus 407 ~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~--G~I~~v~i~~~~~~g~~~~g~G~afV~F~~ 484 (522)
......+.|-+|+..+++ ++|+++|+.| |.|+.|.+++ ++|||+|.+
T Consensus 230 -------~~~~k~LfVgNL~~~~te-------------e~L~~~F~~f~~G~I~rV~~~r-----------gfAFVeF~s 278 (578)
T TIGR01648 230 -------MAKVKILYVRNLMTTTTE-------------EIIEKSFSEFKPGKVERVKKIR-----------DYAFVHFED 278 (578)
T ss_pred -------cccccEEEEeCCCCCCCH-------------HHHHHHHHhcCCCceEEEEeec-----------CeEEEEeCC
Confidence 000022333344433333 4999999999 9999998764 688999999
Q ss_pred hHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 485 AVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 485 ~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
.++|.+||+.|||..|+|++|.|.|+..
T Consensus 279 ~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 279 REDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 9999999999999999999999999975
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9.7e-36 Score=312.93 Aligned_cols=254 Identities=19% Similarity=0.341 Sum_probs=202.7
Q ss_pred eeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEEEe
Q 009944 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (522)
Q Consensus 176 ~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~v~ 254 (522)
+|||+|||+++|+++|.++|..||.|... .++.+..+++++|||||+|.+.++|++|+ .+++..|.|++|+|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v------~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSV------RVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 69999999999999999999999985321 11222234677899999999999999999 699999999999999
Q ss_pred cCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCC
Q 009944 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334 (522)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~ 334 (522)
|+...... ......+|||+|||.++++++|+++|+.||.|..|+++.+. +|.
T Consensus 76 ~s~~~~~~---------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~ 127 (562)
T TIGR01628 76 WSQRDPSL---------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGK 127 (562)
T ss_pred cccccccc---------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCC
Confidence 85321100 01123579999999999999999999999999999999884 788
Q ss_pred cceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCC
Q 009944 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSL 414 (522)
Q Consensus 335 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 414 (522)
++|||||+|.+.++|.+|++.|+|..+.|+.|.|.....+.... . ...
T Consensus 128 skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~------------------~--------------~~~ 175 (562)
T TIGR01628 128 SRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE------------------A--------------APL 175 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc------------------c--------------ccc
Confidence 99999999999999999999999999999999998654321110 0 000
Q ss_pred CCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHH
Q 009944 415 FGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA 494 (522)
Q Consensus 415 ~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ 494 (522)
.......|.+|+..+++ ++|+++|+.||.|.+|.|+.+. +|.. +|+|||+|.+.++|.+|++.
T Consensus 176 ~~~~~l~V~nl~~~~te-------------e~L~~~F~~fG~i~~~~i~~~~-~g~~---~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNE-------------DKLRELFAKFGEITSAAVMKDG-SGRS---RGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred cCCCeEEEeCCCCcCCH-------------HHHHHHHHhcCCEEEEEEEECC-CCCc---ccEEEEEECCHHHHHHHHHH
Confidence 00123344445444433 4999999999999999998875 4433 68899999999999999999
Q ss_pred HhCCccC----CeEEEEEEeCC
Q 009944 495 LSGRKFG----GNTVNAFYYPE 512 (522)
Q Consensus 495 lng~~~~----Gr~l~v~~~~~ 512 (522)
|||..|. |+.|.|.++..
T Consensus 239 l~g~~i~~~~~g~~l~v~~a~~ 260 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRAQK 260 (562)
T ss_pred hCCcEecccccceeeEeecccC
Confidence 9999999 99999988754
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.3e-35 Score=301.81 Aligned_cols=289 Identities=18% Similarity=0.145 Sum_probs=202.3
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHH---hcCceecCce
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA---LDGIIFEGVA 250 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~---~~~~~~~g~~ 250 (522)
++.|||+|||+.+|+++|+++|..||. |..+.+..+++||||+|.+.++|+.|+. +++..|.|++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~------------V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~ 69 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGP------------VSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQP 69 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCC------------eeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeE
Confidence 578999999999999999999999997 6667777789999999999999999994 5889999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~ 330 (522)
|.|.++......... .. . ..........+|||.||++.+++++|+++|+.||.|..|.++++.
T Consensus 70 l~v~~s~~~~~~~~~---~~----~----------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~ 132 (481)
T TIGR01649 70 AFFNYSTSQEIKRDG---NS----D----------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN 132 (481)
T ss_pred EEEEecCCcccccCC---CC----c----------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC
Confidence 999987543211000 00 0 000112233579999999999999999999999999999998763
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCccCC--eEEEEEEccCCCCCCc-----------h----HHHHHHHH--HHH
Q 009944 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASSGQSK-----------T----EQESILAQ--AQQ 391 (522)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~~~~~~-----------~----~~~~~~~~--~~~ 391 (522)
.+|+|||+|.+.++|.+|++.|||..|.| +.|+|.|+........ + +.+..+.. ...
T Consensus 133 ----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~ 208 (481)
T TIGR01649 133 ----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQR 208 (481)
T ss_pred ----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCcccccc
Confidence 24789999999999999999999999854 6899999876431100 0 00000000 000
Q ss_pred HHHHHHHHhhccCCccC--------------------------C-----CCcC-------CCCCCcceEEEeeCCCCcCc
Q 009944 392 HIAIQKMALQTSGMNTL--------------------------G-----GGMS-------LFGETLAKVLCLTEAITADA 433 (522)
Q Consensus 392 ~~~~~~~~~~~~~~~~~--------------------------g-----~~~~-------~~~~~~~~v~~l~~~~~~~~ 433 (522)
....+.........+.. . ...+ .....+..++.+.|+....
T Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~- 287 (481)
T TIGR01649 209 QPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEK- 287 (481)
T ss_pred ccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCC-
Confidence 00000000000000000 0 0000 0012244555555553211
Q ss_pred CCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 434 LADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 434 l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
.++++|+++|+.||.|..|+|+++. +|+|||+|.+.++|..||..|||..|.|++|.|.++..
T Consensus 288 --------vt~~~L~~lF~~yG~V~~vki~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 288 --------VNCDRLFNLFCVYGNVERVKFMKNK--------KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred --------CCHHHHHHHHHhcCCeEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 1125999999999999999998863 37899999999999999999999999999999999754
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.4e-36 Score=277.31 Aligned_cols=244 Identities=19% Similarity=0.338 Sum_probs=200.7
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCcee-cCc
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF-EGV 249 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~-~g~ 249 (522)
..-+.|||+.||.++.|++|.-+|...|+|..+. .+.+-..+.++|||||+|.+.++|++|+ .||+..| .|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR------LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR------LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEE------EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 4467899999999999999999999999975432 2444456788999999999999999999 7999887 478
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEee
Q 009944 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVK 328 (522)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~~~~ 328 (522)
.|.|.-+ ...++|||+|||..+++++|.+.|++.+. |..|.|..
T Consensus 155 ~igvc~S-----------------------------------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~ 199 (506)
T KOG0117|consen 155 LLGVCVS-----------------------------------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYP 199 (506)
T ss_pred EeEEEEe-----------------------------------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEec
Confidence 8888642 22368999999999999999999999987 78888877
Q ss_pred CCC-CCCcceEEEEEEcChHHHHHHHHHHc-C-CccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCC
Q 009944 329 DRD-TGNSKGYGFCVYQDPAVTDIACAALN-G-LKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGM 405 (522)
Q Consensus 329 ~~~-~g~~~g~afV~f~~~~~A~~Al~~l~-g-~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (522)
.+. ..+++|||||+|.+...|..|...|- | +++-|..+.|.||.+.... +.+. +
T Consensus 200 ~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~---ded~----------m---------- 256 (506)
T KOG0117|consen 200 SPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP---DEDT----------M---------- 256 (506)
T ss_pred CccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC---Chhh----------h----------
Confidence 654 56789999999999999999988764 3 6789999999999874321 1111 1
Q ss_pred ccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecCh
Q 009944 406 NTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDA 485 (522)
Q Consensus 406 ~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~ 485 (522)
...+|+.+.|+. ..++++.|+++|+.||.|+.|+.++| ||||.|.+.
T Consensus 257 ------------s~VKvLYVRNL~----------~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR 303 (506)
T KOG0117|consen 257 ------------SKVKVLYVRNLM----------ESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAER 303 (506)
T ss_pred ------------hheeeeeeeccc----------hhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecch
Confidence 334555555542 23445699999999999999999874 789999999
Q ss_pred HhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 486 VGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 486 ~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
++|.+||+.|||..|+|..|.|++++.
T Consensus 304 ~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 304 EDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred HHHHHHHHHhcCceecCceEEEEecCC
Confidence 999999999999999999999999875
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-35 Score=256.79 Aligned_cols=237 Identities=24% Similarity=0.397 Sum_probs=184.6
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCce
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 250 (522)
+...++|||+||...+||+-|..+|++.|.++. +++ .|+ .
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~------------~k~---------i~~-------------------e 42 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTK------------TKV---------IFD-------------------E 42 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhcccccc------------cee---------ehh-------------------h
Confidence 345689999999999999999999999998543 211 111 4
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~ 330 (522)
|+|.|+.... .++.+. ......+||+.|...++.++|++.|.+||.|.+++|++|.
T Consensus 43 ~~v~wa~~p~---------nQsk~t---------------~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 43 LKVNWATAPG---------NQSKPT---------------SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred hccccccCcc---------cCCCCc---------------cccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 5555543221 111111 1123469999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCC
Q 009944 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410 (522)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 410 (522)
.|++++||+||.|-+.++|+.||..|||.+|+++.|+-.||+.+....... ......+..+..+.|
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~----------~ltfdeV~NQssp~N---- 164 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGK----------PLTFDEVYNQSSPDN---- 164 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCC----------CccHHHHhccCCCCC----
Confidence 999999999999999999999999999999999999999998875221111 122333444433322
Q ss_pred CcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHH
Q 009944 411 GMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCAT 490 (522)
Q Consensus 411 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~ 490 (522)
+...|-++...++++ +|++.|++||.|.+|+|.++. |||||+|++.|.|..
T Consensus 165 -------tsVY~G~I~~~lte~-------------~mr~~Fs~fG~I~EVRvFk~q---------GYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 165 -------TSVYVGNIASGLTED-------------LMRQTFSPFGPIQEVRVFKDQ---------GYAFVRFETKEAAAH 215 (321)
T ss_pred -------ceEEeCCcCccccHH-------------HHHHhcccCCcceEEEEeccc---------ceEEEEecchhhHHH
Confidence 444444455544443 899999999999999998875 999999999999999
Q ss_pred HHHHHhCCccCCeEEEEEEeCCcc
Q 009944 491 AKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 491 Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
||..|||..|+|+.|+|+|-.+..
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCC
Confidence 999999999999999999987743
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=274.98 Aligned_cols=323 Identities=17% Similarity=0.250 Sum_probs=222.1
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEEE
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~v 253 (522)
.+|||++||+.++.++|.++|+.+|+|.++.+ |.......++|||||+|.-.|+++.|+ +.++..|.|+.|.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~v------Vt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v 79 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVV------VTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNV 79 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEE------ecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccc
Confidence 58999999999999999999999999876432 333344567999999999999999999 79999999999999
Q ss_pred ecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCC
Q 009944 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333 (522)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g 333 (522)
..++..........+.... .........+.......+.++|.|+|||+.+.+.+|..+|+.||.|..|.|++....+
T Consensus 80 ~~A~~R~r~e~~~~~e~~~---veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk 156 (678)
T KOG0127|consen 80 DPAKKRARSEEVEKGENKA---VEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK 156 (678)
T ss_pred ccccccccchhcccccchh---hhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC
Confidence 8766554333111110000 0000000000001112235789999999999999999999999999999999887555
Q ss_pred CcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHH--HHHHHHH-HHHHHHHHhhc--cCCcc-
Q 009944 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES--ILAQAQQ-HIAIQKMALQT--SGMNT- 407 (522)
Q Consensus 334 ~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~--~~~~~- 407 (522)
.+ |||||+|....+|.+||+.+||..|.|++|.|.||-++.......... .+..+.. ..... ..... ...+.
T Consensus 157 lc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e-~~~d~~~~~~~Ed 234 (678)
T KOG0127|consen 157 LC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKE-ADEDDGKDFDEED 234 (678)
T ss_pred cc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcc-cccccccccchhc
Confidence 55 999999999999999999999999999999999998876544322110 0000000 00000 00000 00000
Q ss_pred -----------CC---------C------Cc-----CC--CCCCcceEEEeeCCCC--cCcCCChHHHHHHHHHHHHHhh
Q 009944 408 -----------LG---------G------GM-----SL--FGETLAKVLCLTEAIT--ADALADDEEYEEILEDMREECG 452 (522)
Q Consensus 408 -----------~g---------~------~~-----~~--~~~~~~~v~~l~~~~~--~~~l~~~~~~~~~~~~l~~~f~ 452 (522)
.| . .+ +. .+.....+.++....+ ...++.|++|.+++++|.++|+
T Consensus 235 ~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs 314 (678)
T KOG0127|consen 235 GEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS 314 (678)
T ss_pred ccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHH
Confidence 00 0 00 00 0001111111111111 1224557788888899999999
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHH-----hC-CccCCeEEEEEEeC
Q 009944 453 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL-----SG-RKFGGNTVNAFYYP 511 (522)
Q Consensus 453 ~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~l-----ng-~~~~Gr~l~v~~~~ 511 (522)
+||.|..+.|..++.++.+ .|+|||.|.+..+|.+||.+. .| ..|.||.|.|..+-
T Consensus 315 kFG~v~ya~iV~~k~T~~s---kGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 315 KFGEVKYAIIVKDKDTGHS---KGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred hhccceeEEEEeccCCCCc---ccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeecc
Confidence 9999999999999999876 789999999999999999976 34 77899999998854
No 15
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=255.99 Aligned_cols=324 Identities=26% Similarity=0.391 Sum_probs=240.2
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
+..-.|+|||+.|.+.+.|+.|+..|..||+|+++|. .-+-.+++.+|||||+|+-+|.|..|+ .|||.+++|
T Consensus 109 ALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInM------SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 109 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINM------SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred HHHHhHheeeeeeEEEechHHHHhhccCCCCcceeec------ccccccccccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 3455789999999999999999999999999875432 333457889999999999999999999 599999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEee
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~ 328 (522)
+.|+|.++.+-.... + -.+. ........++|||..+.++.+++||+..|+.||+|..|.+.+
T Consensus 183 RNiKVgrPsNmpQAQ--------p--iID~--------vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr 244 (544)
T KOG0124|consen 183 RNIKVGRPSNMPQAQ--------P--IIDM--------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR 244 (544)
T ss_pred ccccccCCCCCcccc--------h--HHHH--------HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeec
Confidence 999999876543211 0 0000 001123457899999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCC--------chHHHH-HHHHHHHHHHHHHHH
Q 009944 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS--------KTEQES-ILAQAQQHIAIQKMA 399 (522)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~ 399 (522)
++..+..+||+||+|.+..+...|+..||-+-++|..|+|..+..++..- .+.... ....+......+...
T Consensus 245 ~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAv 324 (544)
T KOG0124|consen 245 APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAV 324 (544)
T ss_pred cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHh
Confidence 99888999999999999999999999999999999999998765443211 011111 011111111111111
Q ss_pred hhccCC-----------------------------ccCC--------------------CCcCC----------------
Q 009944 400 LQTSGM-----------------------------NTLG--------------------GGMSL---------------- 414 (522)
Q Consensus 400 ~~~~~~-----------------------------~~~g--------------------~~~~~---------------- 414 (522)
...... ..+| ...|.
T Consensus 325 Ag~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeK 404 (544)
T KOG0124|consen 325 AGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEK 404 (544)
T ss_pred ccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhh
Confidence 111000 0000 00000
Q ss_pred ------------------------------------CCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeE
Q 009944 415 ------------------------------------FGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLV 458 (522)
Q Consensus 415 ------------------------------------~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~ 458 (522)
.-...++|++|.|+++++++.+ +++.+|.+.|.+||.|.
T Consensus 405 e~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe-----~LegEi~EECgKfG~V~ 479 (544)
T KOG0124|consen 405 EEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDE-----DLEGEITEECGKFGAVN 479 (544)
T ss_pred hHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhh-----HHHHHHHHHHhccccee
Confidence 1145588999999999987643 45569999999999999
Q ss_pred EEEecCCCCCCCCC-CCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcccccccCCC
Q 009944 459 NVVIPRPDQNGGET-PGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 522 (522)
Q Consensus 459 ~v~i~~~~~~g~~~-~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~~~~~~~~ 522 (522)
.|.|...+..+..- .=.-..||+|....++.+|.++|+|++|+|++|+...++...|.+++|+.
T Consensus 480 rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~~Dlsg 544 (544)
T KOG0124|consen 480 RVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDNSDLSG 544 (544)
T ss_pred EEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhcccccccCC
Confidence 99998876544210 00234799999999999999999999999999999999999999999974
No 16
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.8e-33 Score=258.30 Aligned_cols=172 Identities=25% Similarity=0.386 Sum_probs=145.6
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-Hhc-Ccee
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD-GIIF 246 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~-~~~~ 246 (522)
..+...-++||+-||..++|.||+++|++||.+..++ ++.|..++.++|||||.|.+.++|.+|+ .|+ .++|
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~ein------l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl 102 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEIN------LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL 102 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEE------eecccccCcccceEEEEeccHHHHHHHHHHhhccccc
Confidence 3445667899999999999999999999999876544 4777788899999999999999999999 554 4567
Q ss_pred cC--ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEE
Q 009944 247 EG--VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (522)
Q Consensus 247 ~g--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v 324 (522)
-| .+|.|+++...... .....+|||+.|+..+||.+|+++|++||.|++|
T Consensus 103 pG~~~pvqvk~Ad~E~er----------------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~ 154 (510)
T KOG0144|consen 103 PGMHHPVQVKYADGERER----------------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDC 154 (510)
T ss_pred CCCCcceeecccchhhhc----------------------------cccchhhhhhhccccccHHHHHHHHHhhCccchh
Confidence 76 57888875433221 1224689999999999999999999999999999
Q ss_pred EEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcC-CccCC--eEEEEEEccCCC
Q 009944 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-LKMGD--KTLTVRRATASS 375 (522)
Q Consensus 325 ~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g-~~~~g--~~l~v~~~~~~~ 375 (522)
.|.++. .+.++|||||.|.+.+.|..||+.||| .++.| .+|.|.||.++.
T Consensus 155 ~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 155 YILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred hheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 999995 799999999999999999999999999 45665 689999998864
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.4e-32 Score=281.36 Aligned_cols=300 Identities=18% Similarity=0.195 Sum_probs=196.4
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec--CCCcEEEEEEeCHHHHHHHH-HhcCceecC--
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTVEEASNAM-ALDGIIFEG-- 248 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~a~~a~-~~~~~~~~g-- 248 (522)
..+|||+||++.+|+++|+++|..||.| ..+.+. ...++|||+|.+.++|.+|+ .|||..|.+
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V------------~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~ 163 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKV------------LRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGC 163 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCE------------EEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCc
Confidence 3479999999999999999999999984 444433 23469999999999999999 699999965
Q ss_pred ceEEEecCCCCCcc------cc-----ccC-CC-----------CCCCC---------Ccccccc---------cC--C-
Q 009944 249 VAVRVRRPTDYNPT------LA-----AAL-GP-----------GQPSP---------NLNLAAV---------GL--A- 284 (522)
Q Consensus 249 ~~~~v~~~~~~~~~------~~-----~~~-~~-----------~~~~~---------~~~~~~~---------~~--~- 284 (522)
+.|+|.|++...-. .. ..+ +. .++.. ....... +. .
T Consensus 164 ~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 243 (481)
T TIGR01649 164 CTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGP 243 (481)
T ss_pred eEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCC
Confidence 47888876532110 00 000 00 00000 0000000 00 0
Q ss_pred ---------------C-------CCCCCCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEE
Q 009944 285 ---------------S-------GAIGGAEGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341 (522)
Q Consensus 285 ---------------~-------~~~~~~~~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV 341 (522)
+ ..........+|||+|||. .+++++|.++|+.||.|..|+++.++ +|||||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV 318 (481)
T TIGR01649 244 PHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALI 318 (481)
T ss_pred cccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEE
Confidence 0 0000122456899999998 69999999999999999999999863 689999
Q ss_pred EEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHh-hccCCccCCCCcCCCCCCcc
Q 009944 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMAL-QTSGMNTLGGGMSLFGETLA 420 (522)
Q Consensus 342 ~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 420 (522)
+|.+.++|..||..|||..|.|+.|.|.++........... .+..... ....... .......++.........++
T Consensus 319 ~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~--~~~~~~~--~~~d~~~~~~~r~~~~~~~~~~~~~~ps 394 (481)
T TIGR01649 319 EMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREG--QLDDGLT--SYKDYSSSRNHRFKKPGSANKNNIQPPS 394 (481)
T ss_pred EECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCC--cCcCCCc--ccccccCCccccCCCcccccccccCCCC
Confidence 99999999999999999999999999999865432211100 0000000 0000000 00000001100000011233
Q ss_pred eEEEeeCC---CCcCcCCChHHHHHHHHHHHHHhhccCC--eEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHH
Q 009944 421 KVLCLTEA---ITADALADDEEYEEILEDMREECGKYGT--LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL 495 (522)
Q Consensus 421 ~v~~l~~~---~~~~~l~~~~~~~~~~~~l~~~f~~~G~--I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~l 495 (522)
.++.+.|+ +++ ++|+++|+.||. |..|++.... ++. .|+|||+|.+.++|.+||..|
T Consensus 395 ~~L~v~NLp~~~te-------------e~L~~lF~~~G~~~i~~ik~~~~~-~~~----~~~gfVeF~~~e~A~~Al~~l 456 (481)
T TIGR01649 395 ATLHLSNIPLSVSE-------------EDLKELFAENGVHKVKKFKFFPKD-NER----SKMGLLEWESVEDAVEALIAL 456 (481)
T ss_pred cEEEEecCCCCCCH-------------HHHHHHHHhcCCccceEEEEecCC-CCc----ceeEEEEcCCHHHHHHHHHHh
Confidence 34444444 333 499999999998 8888886543 221 478899999999999999999
Q ss_pred hCCccCCeE------EEEEEeCC
Q 009944 496 SGRKFGGNT------VNAFYYPE 512 (522)
Q Consensus 496 ng~~~~Gr~------l~v~~~~~ 512 (522)
||+.|+|+. |+|+|++.
T Consensus 457 n~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 457 NHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred cCCccCCCCCCccceEEEEeccC
Confidence 999999985 99999865
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=6.7e-30 Score=266.62 Aligned_cols=193 Identities=19% Similarity=0.216 Sum_probs=141.3
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~ 251 (522)
..++|||+|||..+|+++|.++|..||.|..++ ++.+..++.++|||||+|.+.++|..|+ .|+|+.|.|+.|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~------~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN------LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 457899999999999999999999999865432 2344456778999999999999999999 699999999999
Q ss_pred EEecCCCCCccccccCCCCCCCCCcccccccCCC-CCCCCCCCCCeEEEcCCCCCC----------CHHHHHHHHHhcCC
Q 009944 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLAS-GAIGGAEGPDRVFVGGLPYYF----------TETQIKELLESFGT 320 (522)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~nLp~~~----------t~~~l~~~F~~~G~ 320 (522)
.|.++................ ........... .......+..+|+|.||...- ..++|+++|++||.
T Consensus 368 ~v~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~ 445 (509)
T TIGR01642 368 HVQRACVGANQATIDTSNGMA--PVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP 445 (509)
T ss_pred EEEECccCCCCCCcccccccc--ccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC
Confidence 999875432211100000000 00000000000 001122345789999996421 23689999999999
Q ss_pred ceEEEEeeCC---CCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 321 LHGFDLVKDR---DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 321 i~~v~~~~~~---~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
|..|.|+++. .++.+.|+|||+|.+.++|++||..|||.+|+|+.|.|.|...
T Consensus 446 v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 446 LINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9999998752 3456789999999999999999999999999999999999743
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=5e-30 Score=263.77 Aligned_cols=176 Identities=23% Similarity=0.326 Sum_probs=141.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
.+|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |+|..|.|++|.|.++...
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchh
Confidence 589999999999999999999999999999999999999999999999999999999997 9999999999999976431
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhcc
Q 009944 375 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 454 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~ 454 (522)
.... .... ....+. ......+.|-+|+..+++ ++|+++|++|
T Consensus 169 ~~~~-----------------~~~~-----~~~~~~---~p~~~~l~v~nl~~~~te-------------~~l~~~f~~~ 210 (457)
T TIGR01622 169 KNRA-----------------AKAA-----THQPGD---IPNFLKLYVGNLHFNITE-------------QELRQIFEPF 210 (457)
T ss_pred hhhh-----------------hhcc-----cccCCC---CCCCCEEEEcCCCCCCCH-------------HHHHHHHHhc
Confidence 1000 0000 000000 001133334444443333 4999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 455 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 455 G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
|.|..|.|+.+..+|.. +|+|||+|.+.++|.+|++.|||..|.|++|.|.|+..
T Consensus 211 G~i~~v~~~~d~~~g~~---~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 211 GDIEDVQLHRDPETGRS---KGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCeEEEEEEEcCCCCcc---ceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999999998876654 68999999999999999999999999999999999763
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=4.4e-30 Score=247.95 Aligned_cols=170 Identities=19% Similarity=0.310 Sum_probs=146.4
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
.....++|||+|||+++|+++|+++|..||.|+.+ .++.+..++.++|||||+|.++++|++|+ +|++..|.+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v------~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTC------RIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 34467899999999999999999999999986432 12334456678899999999999999999 799999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEee
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~ 328 (522)
++|+|.++..... ....++|||+|||..+++++|+++|++||.|..|.|+.
T Consensus 177 r~i~V~~a~p~~~-----------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~ 227 (346)
T TIGR01659 177 KRLKVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR 227 (346)
T ss_pred ceeeeeccccccc-----------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee
Confidence 9999998543211 11235799999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC--eEEEEEEccCC
Q 009944 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATAS 374 (522)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~ 374 (522)
++.+++++|||||+|.+.++|++||+.||+..|.+ ++|.|.++...
T Consensus 228 d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 228 DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 98899999999999999999999999999998865 79999998764
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.7e-29 Score=242.47 Aligned_cols=170 Identities=25% Similarity=0.351 Sum_probs=146.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+..++.++|||||+|.++++|.+||+.|+|..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
.+.... .....+.|-+|+..+++ ++|+++|
T Consensus 185 ~p~~~~-------------------------------------~~~~~lfV~nLp~~vte-------------e~L~~~F 214 (346)
T TIGR01659 185 RPGGES-------------------------------------IKDTNLYVTNLPRTITD-------------DQLDTIF 214 (346)
T ss_pred cccccc-------------------------------------cccceeEEeCCCCcccH-------------HHHHHHH
Confidence 542100 00133445555554444 4999999
Q ss_pred hccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCC--eEEEEEEeCCcc
Q 009944 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPEDK 514 (522)
Q Consensus 452 ~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~G--r~l~v~~~~~~~ 514 (522)
++||.|+.|.|+++..++.+ +|+|||+|.+.++|++||+.||+..|.| ++|.|.|+.+..
T Consensus 215 ~~fG~V~~v~i~~d~~tg~~---kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 215 GKYGQIVQKNILRDKLTGTP---RGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HhcCCEEEEEEeecCCCCcc---ceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999999878766 6899999999999999999999999976 799999998754
No 22
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.3e-29 Score=243.91 Aligned_cols=242 Identities=21% Similarity=0.336 Sum_probs=195.1
Q ss_pred eeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEEEe
Q 009944 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (522)
Q Consensus 176 ~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~v~ 254 (522)
.|||+ +++|+..|.++|+.+|+++.. .++.+. + +-|||||.|.++++|++|| ++|...+.|++|+|.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~------rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSI------RVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeE------EEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee
Confidence 58999 899999999999999987642 223333 3 8999999999999999999 799999999999999
Q ss_pred cCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCC
Q 009944 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334 (522)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~ 334 (522)
|+..- +..|||.||+++++..+|.++|+.||.|.+|++..+. .|
T Consensus 71 ~s~rd----------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g- 114 (369)
T KOG0123|consen 71 WSQRD----------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG- 114 (369)
T ss_pred hhccC----------------------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-
Confidence 84321 1239999999999999999999999999999999995 56
Q ss_pred cceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCC
Q 009944 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSL 414 (522)
Q Consensus 335 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 414 (522)
++|| ||+|.++++|.+|+..+||..+.|+.|.|.....+.....+..+ . .+.
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~---------~~~----------------- 166 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-Y---------KKR----------------- 166 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-h---------hhh-----------------
Confidence 9999 99999999999999999999999999999988654322211111 0 000
Q ss_pred CCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHH
Q 009944 415 FGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA 494 (522)
Q Consensus 415 ~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ 494 (522)
-....++++....+. ..|.++|..||.|.++.++.+.... + .|++||.|.++++|..|++.
T Consensus 167 --~t~v~vk~~~~~~~~-------------~~l~~~f~~~g~i~s~~v~~~~~g~-~---~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 167 --FTNVYVKNLEEDSTD-------------EELKDLFSAYGSITSVAVMRDSIGK-S---KGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred --hhhhheeccccccch-------------HHHHHhhcccCcceEEEEeecCCCC-C---CCccceeecChhHHHHHHHh
Confidence 022333334322222 3899999999999999999987433 2 46779999999999999999
Q ss_pred HhCCccCCeEEEEEEeCC
Q 009944 495 LSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 495 lng~~~~Gr~l~v~~~~~ 512 (522)
|||..+++..+.|.-+..
T Consensus 228 l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 228 LNGKIFGDKELYVGRAQK 245 (369)
T ss_pred ccCCcCCccceeeccccc
Confidence 999999999998876554
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.3e-29 Score=240.08 Aligned_cols=288 Identities=23% Similarity=0.352 Sum_probs=216.8
Q ss_pred CCCCCCcccccchhhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHH
Q 009944 156 GAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEA 235 (522)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a 235 (522)
..+.+.+...++.+..... |||.||++.++..+|.++|+.||.|+++. +.+.-..++|| ||+|.+++.|
T Consensus 60 ~~~~~~~~rim~s~rd~~~--~~i~nl~~~~~~~~~~d~f~~~g~ilS~k--------v~~~~~g~kg~-FV~f~~e~~a 128 (369)
T KOG0123|consen 60 DVLKGKPIRIMWSQRDPSL--VFIKNLDESIDNKSLYDTFSEFGNILSCK--------VATDENGSKGY-FVQFESEESA 128 (369)
T ss_pred cccCCcEEEeehhccCCce--eeecCCCcccCcHHHHHHHHhhcCeeEEE--------EEEcCCCceee-EEEeCCHHHH
Confidence 3444556666666554443 99999999999999999999999976542 12222338999 9999999999
Q ss_pred HHHH-HhcCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHH
Q 009944 236 SNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314 (522)
Q Consensus 236 ~~a~-~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~ 314 (522)
.+|+ .+||..+.|++|.|.............. . .....+.++|.+++.+++++.|.++
T Consensus 129 ~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~--------------------~-~~~~~t~v~vk~~~~~~~~~~l~~~ 187 (369)
T KOG0123|consen 129 KKAIEKLNGMLLNGKKIYVGLFERKEEREAPLG--------------------E-YKKRFTNVYVKNLEEDSTDEELKDL 187 (369)
T ss_pred HHHHHHhcCcccCCCeeEEeeccchhhhccccc--------------------c-hhhhhhhhheeccccccchHHHHHh
Confidence 9999 7999999999999976444332211000 0 1123357999999999999999999
Q ss_pred HHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHH
Q 009944 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394 (522)
Q Consensus 315 F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (522)
|..||.|..+.++.+. .|.++||+||+|.+.++|.+|+..|+|..+.+..+.|..+.. +.+....+........
T Consensus 188 f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk-----k~e~~~~l~~~~~~~~ 261 (369)
T KOG0123|consen 188 FSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK-----KSEREAELKRKFEQEF 261 (369)
T ss_pred hcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc-----chhhHHHHhhhhHhhh
Confidence 9999999999999985 677999999999999999999999999999999999998855 2222333332222222
Q ss_pred HHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCC
Q 009944 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG 474 (522)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g 474 (522)
.+.... .....+.+-++...++. +.|.++|+.||+|.+++|+.+.. |. .
T Consensus 262 ~~~~~~--------------~~~~nl~vknld~~~~~-------------e~L~~~f~~~GeI~s~kv~~~~~-g~---s 310 (369)
T KOG0123|consen 262 AKRSVS--------------LQGANLYVKNLDETLSD-------------EKLRKIFSSFGEITSAKVMVDEN-GK---S 310 (369)
T ss_pred hhcccc--------------ccccccccccCccccch-------------hHHHHHHhcccceeeEEEEeccC-CC---c
Confidence 222111 01133334444333333 38999999999999999998873 33 3
Q ss_pred ccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 475 VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 475 ~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
+|++||+|.+.++|.+|+..+||..++|+.|.|.++..
T Consensus 311 kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr 348 (369)
T KOG0123|consen 311 KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQR 348 (369)
T ss_pred cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhh
Confidence 67889999999999999999999999999999987653
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=8.4e-27 Score=236.29 Aligned_cols=176 Identities=20% Similarity=0.372 Sum_probs=143.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999996543
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc
Q 009944 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~ 453 (522)
....... .. .. .........++|.+|+..++.+ +|+++|+.
T Consensus 187 ~p~a~~~-----~~---------~~------------~~~~~~~~rLfVgnLp~~vtee-------------dLk~lFs~ 227 (612)
T TIGR01645 187 MPQAQPI-----ID---------MV------------QEEAKKFNRIYVASVHPDLSET-------------DIKSVFEA 227 (612)
T ss_pred ccccccc-----cc---------cc------------cccccccceEEeecCCCCCCHH-------------HHHHHHhh
Confidence 2111000 00 00 0000011344555565554444 99999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
||.|.+|.|+++..++.. +|||||+|.+.++|.+||..|||..|+|+.|+|.++.
T Consensus 228 FG~I~svrl~~D~~tgks---KGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 228 FGEIVKCQLARAPTGRGH---KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred cCCeeEEEEEecCCCCCc---CCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 999999999998876654 6888999999999999999999999999999999865
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.6e-27 Score=204.40 Aligned_cols=182 Identities=18% Similarity=0.331 Sum_probs=151.3
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEE
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~ 252 (522)
.-.|||+.|...++.++|++.|.+||+|.. ..+|.|..++++||||||.|.+.++|+.|+ .|||.-|++|.|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~------akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSD------AKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhcccccccc------ceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 456999999999999999999999999865 456999999999999999999999999999 7999999999999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 009944 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (522)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~ 332 (522)
-.|+........ .. .+ .............++|||+||+..++|++|++.|+.||.|.+|++.++
T Consensus 136 TNWATRKp~e~n------~~--~l-----tfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~--- 199 (321)
T KOG0148|consen 136 TNWATRKPSEMN------GK--PL-----TFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD--- 199 (321)
T ss_pred ccccccCccccC------CC--Cc-----cHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---
Confidence 999765541110 00 00 000001112344578999999999999999999999999999999987
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCch
Q 009944 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380 (522)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~ 380 (522)
+|||||.|.+.|.|.+||..+||..++|..|++.|.+........
T Consensus 200 ---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~~ 244 (321)
T KOG0148|consen 200 ---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGINN 244 (321)
T ss_pred ---cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCCc
Confidence 589999999999999999999999999999999998765444333
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=2.4e-26 Score=228.60 Aligned_cols=166 Identities=26% Similarity=0.409 Sum_probs=142.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|+.||+|..|+|+.++.+|.++|||||+|.+.++|.+||+.|+|..|.|+.|.|.|+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc
Q 009944 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~ 453 (522)
..... ....+.|.+|+..+++ ++|.++|++
T Consensus 83 ~~~~~-------------------------------------~~~~l~v~~l~~~~~~-------------~~l~~~f~~ 112 (352)
T TIGR01661 83 SSDSI-------------------------------------KGANLYVSGLPKTMTQ-------------HELESIFSP 112 (352)
T ss_pred ccccc-------------------------------------ccceEEECCccccCCH-------------HHHHHHHhc
Confidence 21100 0133444455555444 499999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCC--eEEEEEEeCC
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPE 512 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~G--r~l~v~~~~~ 512 (522)
||.|..+.++.+..++.. +|+|||+|.+.++|..||+.|||..+.| .+|.|.|+..
T Consensus 113 ~G~i~~~~~~~~~~~~~~---~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~ 170 (352)
T TIGR01661 113 FGQIITSRILSDNVTGLS---KGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANN 170 (352)
T ss_pred cCCEEEEEEEecCCCCCc---CcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCC
Confidence 999999999988766644 6888999999999999999999999988 6788888754
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=7.9e-26 Score=223.00 Aligned_cols=289 Identities=19% Similarity=0.254 Sum_probs=206.8
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....+-|+|+|||..+..++|..+|..||. |..+.+....--|+|+|.++.+|.+|+ .|....+...
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~------------i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~ 449 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGE------------IGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSA 449 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccc------------cceeecCcccceeeeeecCccchHHHHHHhchhhhccC
Confidence 344577999999999999999999999997 444555544446999999999999999 6898888888
Q ss_pred eEEEecCCCCCcc-------ccccCCCC-CCCCCcccccc------cCC----CC---CCCCCCCCCeEEEcCCCCCCCH
Q 009944 250 AVRVRRPTDYNPT-------LAAALGPG-QPSPNLNLAAV------GLA----SG---AIGGAEGPDRVFVGGLPYYFTE 308 (522)
Q Consensus 250 ~~~v~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~------~~~----~~---~~~~~~~~~~l~v~nLp~~~t~ 308 (522)
++.+.|+....-. ........ ..++....... ... .. ........++|||.||+++++.
T Consensus 450 plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~ 529 (725)
T KOG0110|consen 450 PLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTL 529 (725)
T ss_pred ccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccch
Confidence 8888775321111 00000000 00000000000 000 00 0011122344999999999999
Q ss_pred HHHHHHHHhcCCceEEEEeeCCCC---CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHH
Q 009944 309 TQIKELLESFGTLHGFDLVKDRDT---GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI 385 (522)
Q Consensus 309 ~~l~~~F~~~G~i~~v~~~~~~~~---g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~ 385 (522)
++|...|.++|.|..+.|...+.. -.|.|||||+|.++++|+.|+..|+|..|.|+.|.|.++..+......
T Consensus 530 e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g----- 604 (725)
T KOG0110|consen 530 EDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG----- 604 (725)
T ss_pred hHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc-----
Confidence 999999999999999988775422 235699999999999999999999999999999999998621110000
Q ss_pred HHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCC
Q 009944 386 LAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRP 465 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~ 465 (522)
........+ ...|+.|++|+.+..+|+++|..||.|.+|.|++.
T Consensus 605 --------------------------K~~~~kk~~----------tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 605 --------------------------KKKSKKKKG----------TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred --------------------------ccccccccc----------ceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 000000111 12244566788888999999999999999999987
Q ss_pred CCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 466 DQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 466 ~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
...+ -++|+|||+|-++.+|.+|+.+|.+..|-||.|++.|+..+..
T Consensus 649 ~~k~---a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 649 IGKG---AHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hcch---hhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 3333 3367889999999999999999999999999999999987653
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.6e-26 Score=210.97 Aligned_cols=172 Identities=26% Similarity=0.401 Sum_probs=142.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCC-ccCC--eEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL-KMGD--KTLTV 368 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~-~~~g--~~l~v 368 (522)
...-+|||+-||..++|.||+++|++||.|.+|.|++|+.+|.++|||||.|.+.++|.+|+.+||+. +|-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 33457999999999999999999999999999999999999999999999999999999999999984 4544 78999
Q ss_pred EEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHH
Q 009944 369 RRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMR 448 (522)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~ 448 (522)
.||.... +.. ..+...+|-.|....++. +|+
T Consensus 112 k~Ad~E~-------er~-----------------------------~~e~KLFvg~lsK~~te~-------------evr 142 (510)
T KOG0144|consen 112 KYADGER-------ERI-----------------------------VEERKLFVGMLSKQCTEN-------------EVR 142 (510)
T ss_pred cccchhh-------hcc-----------------------------ccchhhhhhhccccccHH-------------HHH
Confidence 9985411 000 011445566666666655 999
Q ss_pred HHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCc-cCC--eEEEEEEeCCcccc
Q 009944 449 EECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK-FGG--NTVNAFYYPEDKYF 516 (522)
Q Consensus 449 ~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~-~~G--r~l~v~~~~~~~~~ 516 (522)
++|++||.|++|.|+++. .+.. +|||||+|.+.+.|..||++|||.. +.| .+|+|-|++..+-.
T Consensus 143 ~iFs~fG~Ied~~ilrd~-~~~s---RGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 143 EIFSRFGHIEDCYILRDP-DGLS---RGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred HHHHhhCccchhhheecc-cccc---cceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 999999999999999988 4443 7999999999999999999999986 566 78999999976543
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=5e-25 Score=181.73 Aligned_cols=165 Identities=28% Similarity=0.464 Sum_probs=142.1
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHH-HhcCce
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGII 245 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~-~~~~~~ 245 (522)
...+|||+||+..++++.|.++|-+.|+ |+++.+ ...+|||||+|.++|+|+-|+ -||...
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagp------------Vv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk 75 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGP------------VVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK 75 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCc------------eeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH
Confidence 3468999999999999999999999997 555544 446899999999999999999 599999
Q ss_pred ecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE-E
Q 009944 246 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG-F 324 (522)
Q Consensus 246 ~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~-v 324 (522)
|.|++|+|..+...... .....+|||+||.+.++|..|.+.|+.||+|.. -
T Consensus 76 LYgrpIrv~kas~~~~n----------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P 127 (203)
T KOG0131|consen 76 LYGRPIRVNKASAHQKN----------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPP 127 (203)
T ss_pred hcCceeEEEeccccccc----------------------------ccccccccccccCcchhHHHHHHHHHhccccccCC
Confidence 99999999875422111 112258999999999999999999999999764 4
Q ss_pred EEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCC
Q 009944 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377 (522)
Q Consensus 325 ~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~ 377 (522)
++++++.||.++|||||.|.+.+.+.+|+..+||..+..++|+|.++..+...
T Consensus 128 ~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 128 KIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred cccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 78889889999999999999999999999999999999999999999776543
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.9e-24 Score=185.75 Aligned_cols=168 Identities=26% Similarity=0.427 Sum_probs=146.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
.+..+.|.|.-||...|+++|+.+|...|.|++|++++|+.+|.+-||+||.|.++++|++|+..|||..+..++|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHH
Q 009944 371 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREE 450 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~ 450 (522)
+.+....- ...+.+|-.|+..++.. +|.++
T Consensus 118 ARPSs~~I-------------------------------------k~aNLYvSGlPktMtqk-------------elE~i 147 (360)
T KOG0145|consen 118 ARPSSDSI-------------------------------------KDANLYVSGLPKTMTQK-------------ELEQI 147 (360)
T ss_pred ccCChhhh-------------------------------------cccceEEecCCccchHH-------------HHHHH
Confidence 97732111 12556677777766665 89999
Q ss_pred hhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCC--eEEEEEEeC
Q 009944 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYP 511 (522)
Q Consensus 451 f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~G--r~l~v~~~~ 511 (522)
|++||.|..-.|+.+..+|.. +|++||.|....+|+.||+.|||..-.| .+|.|-|+.
T Consensus 148 Fs~fGrIItSRiL~dqvtg~s---rGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 148 FSPFGRIITSRILVDQVTGLS---RGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred HHHhhhhhhhhhhhhccccee---cceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 999999999999999988875 4556999999999999999999999877 578888865
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=2.7e-24 Score=177.42 Aligned_cols=171 Identities=21% Similarity=0.303 Sum_probs=144.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
....+|||+||+..++++.|.++|-+.|+|..|.++++..++..+|||||+|.+.|+|+-|++.||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
..-. ... ......++.+|...+++ ..|.+.|
T Consensus 87 s~~~-~nl-----------------------------------~vganlfvgNLd~~vDe-------------~~L~dtF 117 (203)
T KOG0131|consen 87 SAHQ-KNL-----------------------------------DVGANLFVGNLDPEVDE-------------KLLYDTF 117 (203)
T ss_pred cccc-ccc-----------------------------------cccccccccccCcchhH-------------HHHHHHH
Confidence 5210 000 00144556566554433 3889999
Q ss_pred hccCCeEEE-EecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 452 GKYGTLVNV-VIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 452 ~~~G~I~~v-~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
+.||.|... +|++++.+|++ .|++||.|.+.+.+.+|+..|||..+++++|.|+|+..+.
T Consensus 118 safG~l~~~P~i~rd~~tg~~---~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 118 SAFGVLISPPKIMRDPDTGNP---KGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HhccccccCCcccccccCCCC---CCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 999998875 88888888875 5777999999999999999999999999999999987543
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=1.8e-23 Score=201.10 Aligned_cols=178 Identities=21% Similarity=0.278 Sum_probs=140.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
+++|+--|+..+++.+|.++|+.+|.|..|.++.+..++.++|.|||+|.+.+....||. |.|..+.|.+|.|.....
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa- 257 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA- 257 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH-
Confidence 355555566667789999999999999999999999999999999999999999999985 999999999999997522
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhccCCcc-CCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc
Q 009944 375 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNT-LGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 453 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~ 453 (522)
++ +. .....++.. .+...|. ..++|-+|+..+++. +|+..|++
T Consensus 258 ------ek----------nr----~a~~s~a~~~k~~~~p~---~rl~vgnLHfNite~-------------~lr~ifep 301 (549)
T KOG0147|consen 258 ------EK----------NR----AANASPALQGKGFTGPM---RRLYVGNLHFNITED-------------MLRGIFEP 301 (549)
T ss_pred ------HH----------HH----HHhccccccccccccch---hhhhhcccccCchHH-------------HHhhhccC
Confidence 00 00 001111111 1111122 116677777666665 99999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
||.|+.|.++++..+|.. +||+||+|.+.++|.+|++.|||..+.|+.|+|..+++.
T Consensus 302 fg~Ie~v~l~~d~~tG~s---kgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 302 FGKIENVQLTKDSETGRS---KGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred cccceeeeeccccccccc---cCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999888874 455599999999999999999999999999999998764
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=9.9e-23 Score=206.67 Aligned_cols=198 Identities=20% Similarity=0.229 Sum_probs=147.6
Q ss_pred HHHHHHHH-HhcCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 009944 232 VEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310 (522)
Q Consensus 232 ~~~a~~a~-~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~ 310 (522)
.++|.+|| ++++..+........+..+.. .+. .......++|||+|||.+++|++
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~--------------~~~----------~~~p~~~~~lFVgnLp~~~tEd~ 74 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPP--------------GWS----------GVQPGRGCEVFVGKIPRDLYEDE 74 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCC--------------ccc----------CCCCCCCCEEEeCCCCCCCCHHH
Confidence 57788888 788888766655554422110 000 00122347899999999999999
Q ss_pred HHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC-CeEEEEEEccCCCCCCchHHHHHHHHH
Q 009944 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATASSGQSKTEQESILAQA 389 (522)
Q Consensus 311 l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~ 389 (522)
|.++|++||.|..|+|+++ .+|.++|||||+|.+.++|++||+.||+..|. |+.|.|..+..
T Consensus 75 L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~---------------- 137 (578)
T TIGR01648 75 LVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD---------------- 137 (578)
T ss_pred HHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc----------------
Confidence 9999999999999999999 79999999999999999999999999998884 77777765421
Q ss_pred HHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCC-eEEEEec-CCCC
Q 009944 390 QQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGT-LVNVVIP-RPDQ 467 (522)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~-I~~v~i~-~~~~ 467 (522)
...+.|-+|+...+. ++|.++|++++. |+.+.+. ....
T Consensus 138 ---------------------------~~rLFVgNLP~~~Te-------------eeL~eeFskv~egvv~vIv~~~~~~ 177 (578)
T TIGR01648 138 ---------------------------NCRLFVGGIPKNKKR-------------EEILEEFSKVTEGVVDVIVYHSAAD 177 (578)
T ss_pred ---------------------------CceeEeecCCcchhh-------------HHHHHHhhcccCCceEEEEeccccc
Confidence 134445555554444 489999999864 4444443 2222
Q ss_pred CCCCCCCccEEEEEecChHhHHHHHHHHhC--CccCCeEEEEEEeCCc
Q 009944 468 NGGETPGVGKVFLEYYDAVGCATAKNALSG--RKFGGNTVNAFYYPED 513 (522)
Q Consensus 468 ~g~~~~g~G~afV~F~~~~~A~~Ai~~lng--~~~~Gr~l~v~~~~~~ 513 (522)
.+ +..|+|||+|.++++|..|+..|+. ..+.|+.|.|.|+..+
T Consensus 178 kg---KnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~ 222 (578)
T TIGR01648 178 KK---KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPE 222 (578)
T ss_pred cC---ccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccc
Confidence 22 3468999999999999999998864 3578999999998754
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.3e-22 Score=189.76 Aligned_cols=164 Identities=22% Similarity=0.325 Sum_probs=138.6
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-------cCCCcEEEEEEeCHHHHHHHH-H-
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-------NHEKKFAFVEMRTVEEASNAM-A- 240 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-------~~~~g~afV~f~~~~~a~~a~-~- 240 (522)
.+...++|||+|||.+.++++|.+.|++.++ -|++|.+ .+++|||||+|.+...|..|- .
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVte-----------GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTE-----------GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCC-----------CeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 4566889999999999999999999999865 3666654 356899999999999999888 4
Q ss_pred hcC-ceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC
Q 009944 241 LDG-IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG 319 (522)
Q Consensus 241 ~~~-~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G 319 (522)
+++ +++.|..+.|.|+.+...... ........|||+||+.+||++.|+++|+.||
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~de------------------------d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G 284 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDE------------------------DTMSKVKVLYVRNLMESTTEETLKKLFNEFG 284 (506)
T ss_pred cCCceeecCCcceeeccCcccCCCh------------------------hhhhheeeeeeeccchhhhHHHHHHHHHhcc
Confidence 444 668999999999775542210 0123446899999999999999999999999
Q ss_pred CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCC
Q 009944 320 TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (522)
Q Consensus 320 ~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 376 (522)
.|+.|+.++| ||||.|.+.++|.+||+.+||..|.|..|.|.+|++..+
T Consensus 285 ~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 285 KVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred ceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 9999998866 999999999999999999999999999999999987543
No 35
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=5.9e-23 Score=196.19 Aligned_cols=190 Identities=18% Similarity=0.306 Sum_probs=145.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
.||||++||+.++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.++++.|+..+.+..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 59999999999999999999999999999999999989999999999999999999999999999999999999999775
Q ss_pred CCCCchH--HHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhh
Q 009944 375 SGQSKTE--QESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 452 (522)
Q Consensus 375 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~ 452 (522)
.-....+ ..........+....+... .....-+.|-+|+..+.. .+|+.+|+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v-------------~~~k~rLIIRNLPf~~k~-------------~dLk~vFs 139 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKV-------------DLPKWRLIIRNLPFKCKK-------------PDLKNVFS 139 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhc-------------cCccceEEeecCCcccCc-------------HHHHHHHh
Confidence 4222100 0000000000000000000 000122233344444444 49999999
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 453 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 453 ~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
.||.|..|.||+....+.. |||||+|....+|.+||+.+||..|+||+|-|.|+-..+
T Consensus 140 ~~G~V~Ei~IP~k~dgklc----GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 140 NFGKVVEIVIPRKKDGKLC----GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred hcceEEEEEcccCCCCCcc----ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 9999999999988765554 899999999999999999999999999999999965544
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=2.7e-22 Score=177.45 Aligned_cols=148 Identities=24% Similarity=0.431 Sum_probs=129.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
.+|||+|||..+++.+|+.+|++||+|.+|.|+++ ||||..++...|..||..|||.+|.|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 8999999999999999999999999999999988764
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhcc
Q 009944 375 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 454 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~ 454 (522)
.+.. +...|-++....+. ++|+..|++|
T Consensus 75 sk~s---------------------------------------tkl~vgNis~tctn-------------~ElRa~fe~y 102 (346)
T KOG0109|consen 75 SKAS---------------------------------------TKLHVGNISPTCTN-------------QELRAKFEKY 102 (346)
T ss_pred CCCc---------------------------------------cccccCCCCccccC-------------HHHhhhhccc
Confidence 2111 23334444444333 3899999999
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 455 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 455 G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
|.|.+|.|.+ +++||.|.-.++|..|+..|+|+.|.|++++|.+.+..
T Consensus 103 gpviecdivk-----------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 103 GPVIECDIVK-----------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCceeeeeec-----------ceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 9999999987 58899999999999999999999999999999998753
No 37
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.88 E-value=2.7e-21 Score=175.42 Aligned_cols=206 Identities=21% Similarity=0.338 Sum_probs=158.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeE
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (522)
.+.|||.|||.++|.+++.++|++||.|. .|+|.++. .|.-+|-|+|.|.-.+++.-|++.|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 35699999999999999999999999876 38888885 5999999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCch--HHHH--HHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCCh-HHH
Q 009944 366 LTVRRATASSGQSKT--EQES--ILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD-EEY 440 (522)
Q Consensus 366 l~v~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~~ 440 (522)
|+|..|.-....... .+.. ...........+++ ..+...- ....-.....++++.|++++.++..+ +..
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~----~dw~pd~--~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKL----LDWRPDR--DDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhh----cccCCCc--cccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 999988754321100 0000 01111111111111 1111000 11122355678999999999999888 558
Q ss_pred HHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 441 EEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 441 ~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
..+.++|.+.|++||.|.+|.|.-.++ .|.|-|.|.+.++|..||+.|+|++|+||+|..+..+-.
T Consensus 287 ~dlkedl~eec~K~G~v~~vvv~d~hP-------dGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRKVVVYDRHP-------DGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHhCCcceEEEeccCC-------CceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 999999999999999999999976554 378899999999999999999999999999999987753
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.4e-22 Score=181.70 Aligned_cols=173 Identities=22% Similarity=0.442 Sum_probs=139.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
++|||+.|.+.+.|+.|+..|.+||+|++|.+..|+.|++.+|||||+|+-+|.|+-|++.|||..++|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999965432
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhcc
Q 009944 375 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 454 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~ 454 (522)
.+. .......++. ..+. ..++|-.++..++++ ||+..|+.|
T Consensus 194 pQA-----QpiID~vqee--Ak~f-------------------nRiYVaSvHpDLSe~-------------DiKSVFEAF 234 (544)
T KOG0124|consen 194 PQA-----QPIIDMVQEE--AKKF-------------------NRIYVASVHPDLSET-------------DIKSVFEAF 234 (544)
T ss_pred ccc-----chHHHHHHHH--HHhh-------------------heEEeeecCCCccHH-------------HHHHHHHhh
Confidence 211 1111111110 0000 223333344444443 999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEE
Q 009944 455 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509 (522)
Q Consensus 455 G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~ 509 (522)
|+|.+|.+.+.+..+.+ +||+|++|.+...-..||..||-+.++|.-|+|--
T Consensus 235 G~I~~C~LAr~pt~~~H---kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 235 GEIVKCQLARAPTGRGH---KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred cceeeEEeeccCCCCCc---cceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 99999999999865553 55669999999999999999999999999999854
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=4.2e-22 Score=176.25 Aligned_cols=146 Identities=25% Similarity=0.461 Sum_probs=132.2
Q ss_pred eeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEEEe
Q 009944 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (522)
Q Consensus 176 ~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~v~ 254 (522)
+|||+|||..+++.+|+.+|++||+ |..+.+. |.||||..++...|..|+ .|++.+|+|..|.|+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygk------------VlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGK------------VLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCc------------eEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEE
Confidence 7999999999999999999999998 5666554 569999999999999999 699999999999999
Q ss_pred cCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCC
Q 009944 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334 (522)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~ 334 (522)
.++... ...++|+|+||.+.++.++|+..|++||+|.+++|+++
T Consensus 70 aSksKs-------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----- 113 (346)
T KOG0109|consen 70 ASKSKS-------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----- 113 (346)
T ss_pred eccccC-------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----
Confidence 765542 22368999999999999999999999999999999976
Q ss_pred cceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 335 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
|+||.|.-.++|..|+..|+|..|.|+.|+|..++..
T Consensus 114 ---y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 114 ---YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred ---eeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 9999999999999999999999999999999998764
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.85 E-value=3.2e-19 Score=166.15 Aligned_cols=187 Identities=22% Similarity=0.317 Sum_probs=135.7
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE-----ecCCCcEEEEEEeCHHHHHHHH-HhcCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY-----INHEKKFAFVEMRTVEEASNAM-ALDGII 245 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~-----~~~~~g~afV~f~~~~~a~~a~-~~~~~~ 245 (522)
...+.+||.|||+++.+++|+++|....- .|.-|. .++.+|||.|+|+++|.+++|+ .||...
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvG-----------ev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~ 110 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVG-----------EVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE 110 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcC-----------ceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc
Confidence 34567999999999999999999996521 244443 3678999999999999999999 599999
Q ss_pred ecCceEEEecCCCCCccccccC---------------------------------CCCCCCC-C------cc--------
Q 009944 246 FEGVAVRVRRPTDYNPTLAAAL---------------------------------GPGQPSP-N------LN-------- 277 (522)
Q Consensus 246 ~~g~~~~v~~~~~~~~~~~~~~---------------------------------~~~~~~~-~------~~-------- 277 (522)
+.|++|+|+.....+....... +.+.... . ..
T Consensus 111 ~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~ 190 (608)
T KOG4212|consen 111 VNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNN 190 (608)
T ss_pred ccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCcccccccccc
Confidence 9999999975443211110000 0000000 0 00
Q ss_pred ---cccccCC-----CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHH
Q 009944 278 ---LAAVGLA-----SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349 (522)
Q Consensus 278 ---~~~~~~~-----~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A 349 (522)
....++. +...-.+....++||.||.+.+....|++.|.-.|.|..|.+-.++ .|.++|||.++|..+-+|
T Consensus 191 ~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpvea 269 (608)
T KOG4212|consen 191 SSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEA 269 (608)
T ss_pred chhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHH
Confidence 0000000 0001122334679999999999999999999999999999999997 579999999999999999
Q ss_pred HHHHHHHcCCccCCeEEEEEE
Q 009944 350 DIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 350 ~~Al~~l~g~~~~g~~l~v~~ 370 (522)
..||..|++.-+..++..+..
T Consensus 270 vqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 270 VQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHHHHhhccCCCccccceeec
Confidence 999999998777777777766
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=4.5e-21 Score=177.23 Aligned_cols=303 Identities=16% Similarity=0.181 Sum_probs=189.9
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHH-h--cCceecC
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-L--DGIIFEG 248 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~-~--~~~~~~g 248 (522)
..++-|+++|||++++|++|.+++.+||. |..+...+.+.-||++|.+++.|...+. . -.-.+.|
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~------------vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~ 93 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGK------------VTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRG 93 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccc------------eeeeeeeccchhhhhhhcchhhhhheeecccccCccccC
Confidence 35678999999999999999999999997 6666667777799999999999998662 2 2244788
Q ss_pred ceEEEecCCCCC--cccccc-------CCCCCCCCCcc--cccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHh
Q 009944 249 VAVRVRRPTDYN--PTLAAA-------LGPGQPSPNLN--LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLES 317 (522)
Q Consensus 249 ~~~~v~~~~~~~--~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~ 317 (522)
++|.|+++.... ...... ........... +.......+...++..--+++|.|+-+.++-+-|..+|++
T Consensus 94 ~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~ 173 (492)
T KOG1190|consen 94 QPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSK 173 (492)
T ss_pred cceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhh
Confidence 999998743211 000000 00000000000 1111111122222333346789999999999999999999
Q ss_pred cCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc--CCeEEEEEEccCCCCC----------------Cc
Q 009944 318 FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATASSGQ----------------SK 379 (522)
Q Consensus 318 ~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~v~~~~~~~~~----------------~~ 379 (522)
||.|..|.-.... ..=-|+|+|.+.+.|+.|-.+|+|..| +-+.|+|.|+....-. +.
T Consensus 174 fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~ 249 (492)
T KOG1190|consen 174 FGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPV 249 (492)
T ss_pred cceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCC
Confidence 9999877544321 112389999999999999999999877 3367777776532100 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCC-----ccCCC-----Cc-CCCCCCc-ceEEEeeCCCCcCcCCChHHHHHHHHHH
Q 009944 380 TEQESILAQAQQHIAIQKMALQTSGM-----NTLGG-----GM-SLFGETL-AKVLCLTEAITADALADDEEYEEILEDM 447 (522)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~-----~~-~~~~~~~-~~v~~l~~~~~~~~l~~~~~~~~~~~~l 447 (522)
.+....+ +..+.......... ..|.. .. ....... ..++.+.|. .++.+ +.+-|
T Consensus 250 gd~~p~l-----~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl-n~~~V--------T~d~L 315 (492)
T KOG1190|consen 250 GDGQPSL-----DQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL-NEEAV--------TPDVL 315 (492)
T ss_pred Ccccccc-----chhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC-chhcc--------chhHH
Confidence 0000000 00000000000000 00000 00 0011111 233333333 33322 22489
Q ss_pred HHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 448 REECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 448 ~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
..+|+.||.|..|+|+.++. -.|.|+|.+...|+-|++.|+|..+.|++|+|++..-
T Consensus 316 ftlFgvYGdVqRVkil~nkk--------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 316 FTLFGVYGDVQRVKILYNKK--------DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred HHHHhhhcceEEEEeeecCC--------cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 99999999999999998752 4689999999999999999999999999999999654
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=3.8e-20 Score=183.14 Aligned_cols=167 Identities=23% Similarity=0.428 Sum_probs=139.3
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC---------CCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH---------EKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~---------~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
++|||.||++.+|.++|...|...|. |.++.+.. +.|||||+|.++++|+.|+ .|+|.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~------------VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGT------------VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCe------------EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 34999999999999999999999987 44444322 3499999999999999999 79999
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEE
Q 009944 245 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v 324 (522)
.|.|..|.|+++...... ..+. ........+.|+|+|||+.++..+|+++|..||.|.+|
T Consensus 584 vldGH~l~lk~S~~k~~~---~~gK-----------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksv 643 (725)
T KOG0110|consen 584 VLDGHKLELKISENKPAS---TVGK-----------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSV 643 (725)
T ss_pred eecCceEEEEeccCcccc---cccc-----------------ccccccccceeeeeccchHHHHHHHHHHHhcccceeee
Confidence 999999999986511111 0110 00011224689999999999999999999999999999
Q ss_pred EEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 325 ~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.|+.-...+.++|||||+|-++.+|..|+.+|.+..|.|+.|.+.|+..
T Consensus 644 RlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 644 RLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred ccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 9998755677899999999999999999999999999999999999966
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.9e-19 Score=156.16 Aligned_cols=204 Identities=18% Similarity=0.264 Sum_probs=144.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCC-ccC--CeEEEEE
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL-KMG--DKTLTVR 369 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~-~~~--g~~l~v~ 369 (522)
..++|||+-|...-.|+|++.+|..||.|.+|.+.+.+ .|.++|+|||.|.+..+|+.||..|||. ++- ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 34689999999999999999999999999999999986 7999999999999999999999999993 443 4779999
Q ss_pred EccCCCCC----------------Cch-------HHHHHHHHH------------------HHHHHHHHH---HhhccC-
Q 009944 370 RATASSGQ----------------SKT-------EQESILAQA------------------QQHIAIQKM---ALQTSG- 404 (522)
Q Consensus 370 ~~~~~~~~----------------~~~-------~~~~~~~~~------------------~~~~~~~~~---~~~~~~- 404 (522)
|+...... +.. ...+.+... ...-.+|.+ ...-..
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 98754210 000 000000000 000011111 000000
Q ss_pred -C--------ccC--------C-------------------C--------------------------------------
Q 009944 405 -M--------NTL--------G-------------------G-------------------------------------- 410 (522)
Q Consensus 405 -~--------~~~--------g-------------------~-------------------------------------- 410 (522)
+ ..+ + .
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0 000 0 0
Q ss_pred ----------Cc------------CCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCC
Q 009944 411 ----------GM------------SLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQN 468 (522)
Q Consensus 411 ----------~~------------~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~ 468 (522)
.. .....++.+|+.|+..+.+. +|.++|-+||.|++.++..|..+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDa-------------EliQmF~PFGhivSaKVFvDRAT 323 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDA-------------ELIQMFLPFGHIVSAKVFVDRAT 323 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccH-------------HHHHHhccccceeeeeeeehhcc
Confidence 00 00224556677777666665 89999999999999999888866
Q ss_pred CCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 469 GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 469 g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
.. ++++| ||.|.|+.+|+.||.+|||+.|+-++|+|.+--.+
T Consensus 324 NQ-SKCFG--FVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 324 NQ-SKCFG--FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred cc-cccee--eEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 65 46666 99999999999999999999999999999875443
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=7.7e-19 Score=172.02 Aligned_cols=187 Identities=16% Similarity=0.250 Sum_probs=138.6
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++++|++||..+++.++.+++..||.+.++++ |.+..++.++||||.+|.+.-....|+ .+||+.+.++
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l------v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL------VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhhee------ecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 345678999999999999999999999999988876 778888999999999999999999999 6999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCccc---ccccCCCC-CCCCCCCCCeEEEcCCC--CCC-CH-------HHHHHHH
Q 009944 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNL---AAVGLASG-AIGGAEGPDRVFVGGLP--YYF-TE-------TQIKELL 315 (522)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~l~v~nLp--~~~-t~-------~~l~~~F 315 (522)
+|.|+.+-.-... +....+. ...+.... ......+...|.+.|+= .+. .+ ++|+..|
T Consensus 360 ~lvvq~A~~g~~~---------~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec 430 (500)
T KOG0120|consen 360 KLVVQRAIVGASN---------ANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC 430 (500)
T ss_pred eeEeehhhccchh---------ccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh
Confidence 9999864322111 1111110 11111111 11122333445555551 111 11 4677788
Q ss_pred HhcCCceEEEEeeC-C--CCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 316 ESFGTLHGFDLVKD-R--DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 316 ~~~G~i~~v~~~~~-~--~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
++||.|..|.++++ . ...-..|..||+|.+.+++++|+.+|+|.+|.|++|...|..
T Consensus 431 ~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 431 AKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred cccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 89999999999887 2 223346779999999999999999999999999999999874
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.80 E-value=5.9e-18 Score=156.81 Aligned_cols=298 Identities=17% Similarity=0.142 Sum_probs=193.6
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcE-EEEEEeCHHHHHHHH-HhcCceecC--c
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF-AFVEMRTVEEASNAM-ALDGIIFEG--V 249 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~-afV~f~~~~~a~~a~-~~~~~~~~g--~ 249 (522)
.-.++|+|+-+-++-+-|..+|+.||.+ ..-+.+.+..+| |.|+|.+.+.|..|. .|+|..|.. +
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~V-----------lKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcC 218 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFV-----------LKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCC 218 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhccee-----------EEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCcee
Confidence 4468899999999999999999999983 233344566665 999999999999999 799988765 4
Q ss_pred eEEEecCCC--------------CCccccccCCCCCCCCC-------cccccccCCC--------------CCCCCCCCC
Q 009944 250 AVRVRRPTD--------------YNPTLAAALGPGQPSPN-------LNLAAVGLAS--------------GAIGGAEGP 294 (522)
Q Consensus 250 ~~~v~~~~~--------------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--------------~~~~~~~~~ 294 (522)
.|+|.+++- |..... ..+..++.-. .+..+....+ +........
T Consensus 219 tLrId~Sklt~LnvKynndkSRDyTnp~L-P~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n 297 (492)
T KOG1190|consen 219 TLRIDFSKLTDLNVKYNNDKSRDYTNPDL-PVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSAN 297 (492)
T ss_pred EEEeehhhcccceeeccccccccccCCCC-CCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCc
Confidence 566655431 111100 0010000000 0000000000 000001124
Q ss_pred CeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 295 DRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 295 ~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
..|.|.||.. .+|.+-|..+|..||.|..|+|..++. --|+|+|.+...|+-|+..|+|..+.|+.|+|.+++.
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 5688999865 599999999999999999999998742 3599999999999999999999999999999999876
Q ss_pred CCCCCchHHHH--HHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 374 SSGQSKTEQES--ILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 374 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
...+.+.+.+. -+... .......-...||.-.....-.++..+.|.++...- .+++|+.+|
T Consensus 373 ~~vqlp~egq~d~glT~d-------y~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~sv----------see~lk~~f 435 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKD-------YGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSV----------SEEDLKNLF 435 (492)
T ss_pred ccccCCCCCCcccccccc-------CCCCchhhccCcccccccccCCchhheeeccCCccc----------chhHHHHhh
Confidence 65443332110 00000 000000111223333333333445555665554322 114999999
Q ss_pred hccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCe-EEEEEEeCC
Q 009944 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN-TVNAFYYPE 512 (522)
Q Consensus 452 ~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr-~l~v~~~~~ 512 (522)
..-|-..+....-. ++.-+|++.++++|+|..|+..|+++.+++. .|+|+|...
T Consensus 436 ~~~g~~vkafkff~-------kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 436 QEPGGQVKAFKFFQ-------KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hcCCceEEeeeecC-------CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99887766544321 1235899999999999999999999999765 999999753
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.79 E-value=1.2e-17 Score=159.06 Aligned_cols=170 Identities=22% Similarity=0.291 Sum_probs=130.5
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEEE
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~v 253 (522)
..-|.+.+||+++|++||.+||..++.- ..++....++..|-|||+|.++|++++||+.+...+..+-|.|
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I~---------~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEV 80 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGIE---------NLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEV 80 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCcee---------EEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEE
Confidence 4468899999999999999999998531 1233334477789999999999999999999999999999999
Q ss_pred ecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEeeCCCC
Q 009944 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDRDT 332 (522)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~-v~~~~~~~~ 332 (522)
-.+...+.... +.+...........|.+++||+.||++||.++|+..-.|.. |.++.+. .
T Consensus 81 f~~~~~e~d~~------------------~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-r 141 (510)
T KOG4211|consen 81 FTAGGAEADWV------------------MRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-R 141 (510)
T ss_pred EccCCcccccc------------------ccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-C
Confidence 75433221100 00000111123457999999999999999999998877665 4455554 6
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
+.+.|.|||+|++.+.|++||. -|...|+.+-|.|..+.
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 7899999999999999999987 56688899999998764
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=1.7e-19 Score=168.66 Aligned_cols=173 Identities=21% Similarity=0.382 Sum_probs=145.7
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~ 252 (522)
+.++|||++|++.++++.|+++|.+||.+..+. +..+..++.++||+||+|++++.+.++|......|.|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~------vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV------VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE------EeccCCCCCcccccceecCCCcchheeecccccccCCcccc
Confidence 678999999999999999999999999965432 23333457789999999999999999998888899999999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 009944 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (522)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~ 332 (522)
+..+.......... ......+|||++||.++++++++++|++||.|..+.++.|..+
T Consensus 79 ~k~av~r~~~~~~~-----------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~ 135 (311)
T KOG4205|consen 79 PKRAVSREDQTKVG-----------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT 135 (311)
T ss_pred ceeccCcccccccc-----------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc
Confidence 98765543221100 0112358999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCC
Q 009944 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (522)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (522)
...+||+||.|.+.+.+.+++. ..-+.|.|+.|.|..|.++.
T Consensus 136 ~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 136 SRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred cccccceeeEeccccccceecc-cceeeecCceeeEeeccchh
Confidence 9999999999999999999876 66789999999999998754
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.77 E-value=1.1e-17 Score=144.50 Aligned_cols=185 Identities=21% Similarity=0.314 Sum_probs=142.2
Q ss_pred cceeEEeCCCccCcHHHHHH----HHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 174 ARRVYVGGLPPLANEQAIAT----FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~----~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
..+|||.||+..+..++|+. +|++||.|+. |....+.+.+|-|||.|.+.+.|..|+ .|+|..+.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ild---------I~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD---------ISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEE---------EEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 34999999999999999888 9999998653 666667888999999999999999999 799999999
Q ss_pred ceEEEecCCCCCccccccCCCCCC---C----------------CCcc-cccccCCCC-CCCCCCCCCeEEEcCCCCCCC
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQP---S----------------PNLN-LAAVGLASG-AIGGAEGPDRVFVGGLPYYFT 307 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~---~----------------~~~~-~~~~~~~~~-~~~~~~~~~~l~v~nLp~~~t 307 (522)
+.++|+|++..........+.... . .... .......+. ......+...||+.|||..++
T Consensus 80 K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~ 159 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESE 159 (221)
T ss_pred chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchh
Confidence 999999988766554432210000 0 0000 000000000 011233446799999999999
Q ss_pred HHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC-CeEEEEEEcc
Q 009944 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRAT 372 (522)
Q Consensus 308 ~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~ 372 (522)
.+.|..+|.+|.....|.++... .+.|||+|.+...|..|...|+|..|- ..+|.|.++.
T Consensus 160 ~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 160 SEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999999988653 578999999999999999999998886 8889888874
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=2e-17 Score=136.87 Aligned_cols=176 Identities=24% Similarity=0.340 Sum_probs=129.3
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC---CcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE---KKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
...++|||+|||.++-+.+|.++|.+||. |.++.+... ..||||+|+++.+|+.|+ .-+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~------------i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGR------------IREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcc------------eEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 34689999999999999999999999998 555655433 569999999999999999 69999999
Q ss_pred CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEe
Q 009944 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 327 (522)
Q Consensus 248 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~ 327 (522)
|..|+|..+.......-....-+..... ...+........-.....|.|.+||+..+++||++++.+.|.|....+.
T Consensus 72 g~rLRVEfprggr~s~~~~G~y~gggrg---Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~ 148 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRGSYSGGGRG---GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ 148 (241)
T ss_pred cceEEEEeccCCCcccccccccCCCCCC---CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee
Confidence 9999999876543211000000000000 0000000001112344689999999999999999999999999999888
Q ss_pred eCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc--CCeEEEEE
Q 009944 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVR 369 (522)
Q Consensus 328 ~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~v~ 369 (522)
+| |++.|+|...|+.+-|+..|....+ .|....+.
T Consensus 149 rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 149 RD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred cc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 87 4799999999999999999987665 44444443
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=1.4e-17 Score=145.82 Aligned_cols=81 Identities=28% Similarity=0.517 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||-.||.+..+.+|.++|-.||.|.+.++..|+.|+.+++|+||.|.++.+|+.||.+|||+.|+-+.|+|.+..+
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred C
Q 009944 374 S 374 (522)
Q Consensus 374 ~ 374 (522)
+
T Consensus 365 k 365 (371)
T KOG0146|consen 365 K 365 (371)
T ss_pred c
Confidence 4
No 51
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=7.2e-17 Score=136.38 Aligned_cols=84 Identities=23% Similarity=0.549 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7643
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=1.1e-16 Score=138.47 Aligned_cols=194 Identities=19% Similarity=0.271 Sum_probs=136.0
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 295 DRVFVGGLPYYFTETQIKE----LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~----~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
.||||.||+..+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|..|+.+|+|+.|.|+.++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999998877 999999999888775 567899999999999999999999999999999999999
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHH-------HHHHhh-----ccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChH
Q 009944 371 ATASSGQSKTEQESILAQAQQHIAI-------QKMALQ-----TSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDE 438 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-----~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 438 (522)
|..+...-..... ........... +..... ....+.+... +.....+..++.+.++..+.
T Consensus 87 A~s~sdii~~~~~-~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es------ 158 (221)
T KOG4206|consen 87 AKSDSDIIAQAPG-TFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSES------ 158 (221)
T ss_pred ccCccchhhccCc-eeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcch------
Confidence 9876532211000 00000000000 000000 0000111111 12223455565565554443
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccC-CeEEEEEEeC
Q 009944 439 EYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYP 511 (522)
Q Consensus 439 ~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~-Gr~l~v~~~~ 511 (522)
..+.|..+|+.|.-...|.++... .+.|||+|.+...|..|..+|.|..+- ..++.+.|+.
T Consensus 159 ----~~e~l~~lf~qf~g~keir~i~~~--------~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 159 ----ESEMLSDLFEQFPGFKEIRLIPPR--------SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred ----hHHHHHHHHhhCcccceeEeccCC--------CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 235778889999988888887643 388999999999999999999999997 8999998875
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.3e-15 Score=126.27 Aligned_cols=178 Identities=21% Similarity=0.298 Sum_probs=126.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..++|||+|||.++-+.+|.++|.+||.|..|.|...+ ...+||||+|+++-+|+.||..-+|.-+.|+.|.|.++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 34689999999999999999999999999999887542 235799999999999999999999999999999999986
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCc----CC--CCCCcceEEEeeCCCCcCcCCChHHHHHHHHH
Q 009944 373 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGM----SL--FGETLAKVLCLTEAITADALADDEEYEEILED 446 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~--~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~ 446 (522)
-........ ......-...+... +. .++.-.-|-.|+...++ +|
T Consensus 82 ggr~s~~~~-----------------G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSW-------------QD 131 (241)
T KOG0105|consen 82 GGRSSSDRR-----------------GSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSW-------------QD 131 (241)
T ss_pred CCCcccccc-----------------cccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCch-------------HH
Confidence 532110000 00000000000000 11 11111222234444344 59
Q ss_pred HHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCcc--CCeEEEEEEeCCc
Q 009944 447 MREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF--GGNTVNAFYYPED 513 (522)
Q Consensus 447 l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~--~Gr~l~v~~~~~~ 513 (522)
|++++.+-|.|-...+.++ |+..|+|...|+.+.|+..|....| .|-+..+......
T Consensus 132 LKDHmReaGdvCfadv~rD----------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~ 190 (241)
T KOG0105|consen 132 LKDHMREAGDVCFADVQRD----------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDE 190 (241)
T ss_pred HHHHHHhhCCeeeeeeecc----------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccC
Confidence 9999999999999999886 4459999999999999999998877 4666655554443
No 54
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.67 E-value=1.2e-16 Score=149.55 Aligned_cols=173 Identities=22% Similarity=0.362 Sum_probs=139.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
...+|||++|++.++++.|++.|.+||.|.++.+++++.++.++||+||+|.+++....+|.. .-+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 457899999999999999999999999999999999999999999999999999999988774 3488999999999987
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhh
Q 009944 373 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 452 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~ 452 (522)
+...+....... ......|-.|+..+++ ++++++|+
T Consensus 84 ~r~~~~~~~~~~-------------------------------~tkkiFvGG~~~~~~e-------------~~~r~yfe 119 (311)
T KOG4205|consen 84 SREDQTKVGRHL-------------------------------RTKKIFVGGLPPDTTE-------------EDFKDYFE 119 (311)
T ss_pred Cccccccccccc-------------------------------ceeEEEecCcCCCCch-------------HHHhhhhh
Confidence 754433221100 0012222223333333 49999999
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 453 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 453 ~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
+||.|..+.++.+.....+ +|++||.|.+.+...+++. ...+.|+|+.|.|--|..+.
T Consensus 120 ~~g~v~~~~~~~d~~~~~~---rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 120 QFGKVADVVIMYDKTTSRP---RGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred ccceeEeeEEeeccccccc---ccceeeEeccccccceecc-cceeeecCceeeEeeccchh
Confidence 9999999999999877665 6677999999999999887 58999999999998877654
No 55
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.67 E-value=2.1e-14 Score=131.84 Aligned_cols=281 Identities=19% Similarity=0.173 Sum_probs=185.7
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHH---hcCceecCce
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA---LDGIIFEGVA 250 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~---~~~~~~~g~~ 250 (522)
+--|.|.+|-..++|.+|.+.++.||+ |.-+.....+..|.|+|++.+.|+.++. -+...+.|+.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~------------i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGP------------IAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCc------------eEEEEeccccceeeeeeccccchhhheehhccCcccccCch
Confidence 346999999999999999999999997 4445555667789999999999999983 4667788888
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCC-eEE--EcCCCCCCCHHHHHHHHHhcCCceEEEEe
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD-RVF--VGGLPYYFTETQIKELLESFGTLHGFDLV 327 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~~~ 327 (522)
..+.++....-.. .+ .....++ .|+ |-|--+.+|-+-|..++...|+|..|.|+
T Consensus 99 Al~NyStsq~i~R---~g--------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIf 155 (494)
T KOG1456|consen 99 ALFNYSTSQCIER---PG--------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIF 155 (494)
T ss_pred hhcccchhhhhcc---CC--------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEE
Confidence 7777653221100 00 0111222 333 44555679999999999999999999888
Q ss_pred eCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc--CCeEEEEEEccCCCCCCc-hHHHHHHHHHHHHH-----------
Q 009944 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATASSGQSK-TEQESILAQAQQHI----------- 393 (522)
Q Consensus 328 ~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~v~~~~~~~~~~~-~~~~~~~~~~~~~~----------- 393 (522)
+. +|. -|.|||++.+.|++|-.+|||.-| +-++|+|.||++..-... .+++. ........
T Consensus 156 kk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~Dt-wDyTlp~~~~~~~~g~~~~ 229 (494)
T KOG1456|consen 156 KK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDT-WDYTLPDLRGPYDPGRNHY 229 (494)
T ss_pred ec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCcc-ccccCCCCCCCCCCCCCCC
Confidence 75 444 599999999999999999999766 458899999987531110 00000 10000000
Q ss_pred HHHH--HHhhccCCccCC--------------CCcCC---------------CCCCcceEEEeeCCCCcCcCCChHHHHH
Q 009944 394 AIQK--MALQTSGMNTLG--------------GGMSL---------------FGETLAKVLCLTEAITADALADDEEYEE 442 (522)
Q Consensus 394 ~~~~--~~~~~~~~~~~g--------------~~~~~---------------~~~~~~~v~~l~~~~~~~~l~~~~~~~~ 442 (522)
..+. ......+.+..| ...|. ....+..|+.+..+ +...-|
T Consensus 230 ~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGL---dh~k~N----- 301 (494)
T KOG1456|consen 230 DRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGL---DHGKMN----- 301 (494)
T ss_pred ccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEec---cccccc-----
Confidence 0000 000000000000 00000 11122333332221 111111
Q ss_pred HHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 443 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 443 ~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
.+.|..+|..||.|+.|+.++.+ -|.|.|++.+..+.++|+..||+..+-|.+|.|.+...
T Consensus 302 -~drlFNl~ClYGNV~rvkFmkTk--------~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 302 -CDRLFNLFCLYGNVERVKFMKTK--------PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred -hhhhhhhhhhcCceeeEEEeecc--------cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 15899999999999999999865 27889999999999999999999999999999987654
No 56
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.66 E-value=9.6e-16 Score=140.95 Aligned_cols=289 Identities=20% Similarity=0.223 Sum_probs=186.7
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE-ecCCCcEEEEEEeCHHHHHHHHHhcCceecCceE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY-INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~ 251 (522)
...-|-..+||+..++.+|..||+..-.. .+..+++.. .+...|.|.|.|.+.|.-+-|++-+...+.++.|
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia-------~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryi 131 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIA-------NGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYI 131 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhcc-------ccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCce
Confidence 34457788999999999999999876322 223344333 4556799999999999999999888888999999
Q ss_pred EEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC----ceEEEEe
Q 009944 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT----LHGFDLV 327 (522)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~----i~~v~~~ 327 (522)
.|-.+...+--..+..+...+.+.. .....--|.+++||+++++.++.++|..-.. ++.|-++
T Consensus 132 evYka~ge~f~~iagg~s~e~~~fl-------------sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV 198 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSNEAAPFL-------------SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV 198 (508)
T ss_pred eeeccCchhheEecCCccccCCCCC-------------CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE
Confidence 9976543321111100000000000 0011224779999999999999999974333 3455555
Q ss_pred eCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCC--
Q 009944 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGM-- 405 (522)
Q Consensus 328 ~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 405 (522)
+.+ +|+.+|-|||.|..+++|+.||. -|...|+.+-|.+..++. .+ -.|-++......
T Consensus 199 ~rp-dgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRSTa------aE------------vqqvlnr~~s~pLi 258 (508)
T KOG1365|consen 199 TRP-DGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRSTA------AE------------VQQVLNREVSEPLI 258 (508)
T ss_pred ECC-CCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHHhH------HH------------HHHHHHhhcccccc
Confidence 553 78999999999999999999997 344455555554443321 11 111111111111
Q ss_pred ------ccCCCCcCCCCC-CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEE---EEecCCCCCCCCCCCc
Q 009944 406 ------NTLGGGMSLFGE-TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVN---VVIPRPDQNGGETPGV 475 (522)
Q Consensus 406 ------~~~g~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~---v~i~~~~~~g~~~~g~ 475 (522)
-.++......++ ....|+-|... +|+.++++|-.||..|..-+. |.+.-+. +|.+ .
T Consensus 259 ~~~~sp~~p~~p~~~~p~~~~kdcvRLRGL----------Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrP---S 324 (508)
T KOG1365|consen 259 PGLTSPLLPGGPARLVPPTRSKDCVRLRGL----------PYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRP---S 324 (508)
T ss_pred CCCCCCCCCCCccccCCCCCCCCeeEecCC----------ChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCc---C
Confidence 111111111111 22445555443 788888999999999986433 5555443 6776 5
Q ss_pred cEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 476 GKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 476 G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
|-|||+|.+.++|..|...-+.....+|-|.|--..-+++
T Consensus 325 GeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 325 GEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 9999999999999999999888888889888866554443
No 57
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=124.50 Aligned_cols=180 Identities=21% Similarity=0.294 Sum_probs=120.5
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC----CCcEEEEEEeCHHHHHHHH-HhcC
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAM-ALDG 243 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~a~~a~-~~~~ 243 (522)
+.....++|||.|||.++...+|..+|..|--.- ...+.. +.+ .+-+|||.|.+...|..|+ +|||
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYE--------gslLK~-Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYE--------GSLLKY-TSKGDQVCKPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCcc--------ceeeee-ccCCCccccceEEEEecchHHHHHHHHHhcC
Confidence 3445679999999999999999999999883211 112221 222 2479999999999999999 7999
Q ss_pred ceec---CceEEEecCCCCCccccccCCC-CCCCCCc-------------------------ccccc-------------
Q 009944 244 IIFE---GVAVRVRRPTDYNPTLAAALGP-GQPSPNL-------------------------NLAAV------------- 281 (522)
Q Consensus 244 ~~~~---g~~~~v~~~~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~~------------- 281 (522)
+.|+ +..|+|..++............ +.+.+.. .+...
T Consensus 100 vrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~ 179 (284)
T KOG1457|consen 100 VRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTK 179 (284)
T ss_pred eeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccc
Confidence 9986 5778887655332211111000 0000000 00000
Q ss_pred --------cCCC----------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEE
Q 009944 282 --------GLAS----------GAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343 (522)
Q Consensus 282 --------~~~~----------~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f 343 (522)
...+ ....+...+.+|||.||.++++|++|+.+|+.|.....++|... .| -..|||+|
T Consensus 180 ~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~ 255 (284)
T KOG1457|consen 180 SEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADF 255 (284)
T ss_pred hhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecH
Confidence 0000 01112334578999999999999999999999988776666532 33 35799999
Q ss_pred cChHHHHHHHHHHcCCcc
Q 009944 344 QDPAVTDIACAALNGLKM 361 (522)
Q Consensus 344 ~~~~~A~~Al~~l~g~~~ 361 (522)
++.+.|..||..|+|..|
T Consensus 256 ~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 256 EEIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHHhhccee
Confidence 999999999999998766
No 58
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.61 E-value=2.9e-13 Score=124.47 Aligned_cols=294 Identities=15% Similarity=0.163 Sum_probs=182.2
Q ss_pred EeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-cCCCcEEEEEEeCHHHHHHHH-HhcCceecC--ceEEEe
Q 009944 179 VGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG--VAVRVR 254 (522)
Q Consensus 179 v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g--~~~~v~ 254 (522)
|-|--+.+|-+-|..+....|+ |..+.+ .+..-.|.|+|.+.+.|++|. .|||..|.. ++|+|.
T Consensus 127 IlNp~YpItvDVly~Icnp~Gk------------VlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGK------------VLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred eecCccccchhhhhhhcCCCCc------------eEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 4455556899999999999887 444444 444457999999999999999 799988764 678887
Q ss_pred cCCCCCcccc---------------ccCC------------------------------------CCCCCCCcccc--cc
Q 009944 255 RPTDYNPTLA---------------AALG------------------------------------PGQPSPNLNLA--AV 281 (522)
Q Consensus 255 ~~~~~~~~~~---------------~~~~------------------------------------~~~~~~~~~~~--~~ 281 (522)
++++..-... .... +..+.+..... ..
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 7664211000 0000 00000000000 00
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCc
Q 009944 282 GLASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK 360 (522)
Q Consensus 282 ~~~~~~~~~~~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~ 360 (522)
+.......+..+...+.|-+|... ++-+.|..+|-.||.|+.|++++.+ .|.|.||+.+....++|+..||+..
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~ 349 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIP 349 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCc
Confidence 000111123345578899999876 5668899999999999999999875 4779999999999999999999999
Q ss_pred cCCeEEEEEEccCCCCCCc-----hHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEe---eCCCCcC
Q 009944 361 MGDKTLTVRRATASSGQSK-----TEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCL---TEAITAD 432 (522)
Q Consensus 361 ~~g~~l~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l---~~~~~~~ 432 (522)
+.|.+|.|.++......+. ++....... .... ...-...|+...-..-..+++|+.. +..++++
T Consensus 350 lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKd----ys~S----kNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe 421 (494)
T KOG1456|consen 350 LFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKD----YSGS----KNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEE 421 (494)
T ss_pred cccceEEEeeccccccccCCceecCCCCcchhh----cccc----cccccCChhHhhcccccCCcceeEEecCCCccCHH
Confidence 9999999998865432111 110000000 0000 0000001111111112245555544 3344443
Q ss_pred cCCChHHHHHHHHHHHHHhhccCC-eEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCe------EE
Q 009944 433 ALADDEEYEEILEDMREECGKYGT-LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN------TV 505 (522)
Q Consensus 433 ~l~~~~~~~~~~~~l~~~f~~~G~-I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr------~l 505 (522)
.|.++|...+. -.+|+|..-+..-.. -| .++|++.++|..||..||...+.+. +|
T Consensus 422 -------------~l~~i~nek~v~~~svkvFp~kserSs---sG--llEfe~~s~Aveal~~~NH~pi~~p~gs~Pfil 483 (494)
T KOG1456|consen 422 -------------QLIGICNEKDVPPTSVKVFPLKSERSS---SG--LLEFENKSDAVEALMKLNHYPIEGPNGSFPFIL 483 (494)
T ss_pred -------------HHHHHhhhcCCCcceEEeecccccccc---cc--eeeeehHHHHHHHHHHhccccccCCCCCCCeee
Confidence 77777776554 455666554422221 25 9999999999999999999998763 67
Q ss_pred EEEEeCCccc
Q 009944 506 NAFYYPEDKY 515 (522)
Q Consensus 506 ~v~~~~~~~~ 515 (522)
++.|.+..-+
T Consensus 484 Klcfsts~~~ 493 (494)
T KOG1456|consen 484 KLCFSTSKHM 493 (494)
T ss_pred eeeecccccC
Confidence 7888776543
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.1e-15 Score=132.29 Aligned_cols=165 Identities=21% Similarity=0.312 Sum_probs=126.5
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEEE
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~v 253 (522)
..|||++||+.+.+.+|..||..||.+. ++.+ ..||+||+|.+..+|.-|+ .+++..|.|..+.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~------------d~~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIP------------DADM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccc------------ccee--ecccceeccCchhhhhcccchhcCceecceeeee
Confidence 3699999999999999999999999853 2222 4578899999999999999 79999999988888
Q ss_pred ecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCC
Q 009944 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333 (522)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g 333 (522)
.++....... +.+..+.... .......+....+.|+|.+++..+.+.+|.+.|.++|.+....+
T Consensus 68 e~~r~~~~~~----g~~~~g~r~~-----~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------- 131 (216)
T KOG0106|consen 68 EHARGKRRGR----GRPRGGDRRS-----DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------- 131 (216)
T ss_pred eccccccccc----CCCCCCCccc-----hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------
Confidence 8876433222 1111100000 00011112334467999999999999999999999999955544
Q ss_pred CcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 334 ~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
..+++||+|.+.++|.+|+..|+|..+.++.|.+..
T Consensus 132 -~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 132 -RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred -hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 245899999999999999999999999999999943
No 60
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.1e-15 Score=131.22 Aligned_cols=162 Identities=21% Similarity=0.348 Sum_probs=123.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCC
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (522)
.+||++||+.+.+.+|..+|..||.|..|.+.. ||+||+|.+..+|.-|+..|||..|.|..+.|.|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 699999999999999999999999999988763 689999999999999999999999999889999886421
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhccCCccCC-----CCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHH
Q 009944 376 GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG-----GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREE 450 (522)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~ 450 (522)
... +...+| ...-..+....+++++.+..+. .-+++|.+.
T Consensus 75 ~~~-------------------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r----------~~~qdl~d~ 119 (216)
T KOG0106|consen 75 RGR-------------------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLR----------VSWQDLKDH 119 (216)
T ss_pred ccc-------------------------CCCCCCCccchhhccCCcccccceeeeccchhh----------hhHHHHhhh
Confidence 110 000111 0011111234445555444332 234699999
Q ss_pred hhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 451 f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
|.++|.+....+. .+++||+|++.++|.+|+..|+|..+.|+.|.+....
T Consensus 120 ~~~~g~~~~~~~~-----------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 120 FRPAGEVTYVDAR-----------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hcccCCCchhhhh-----------ccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 9999999666552 2577999999999999999999999999999995433
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=7.7e-15 Score=108.97 Aligned_cols=70 Identities=27% Similarity=0.644 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 297 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
|||+|||..+++++|+++|+.||.|..+.+..+ .++..+|+|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5889999999999999999999999999999999885
No 62
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.57 E-value=5.3e-14 Score=128.37 Aligned_cols=196 Identities=17% Similarity=0.156 Sum_probs=134.5
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEE---EecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV---YINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~---~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
....|||.|||.++|-+++.++|..||.|...... +.+-+.+ .-+.-+|=|.+.|-..+.+..|+ -|++..|.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t--~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQT--GEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCC--CCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 35569999999999999999999999987543221 1122222 22455899999999999999999 599999999
Q ss_pred ceEEEecCCCCCccccccCCC----CCCCCCcc---cccccCCC--CCCCCCCCCCeEEEcCCC----CCCC-------H
Q 009944 249 VAVRVRRPTDYNPTLAAALGP----GQPSPNLN---LAAVGLAS--GAIGGAEGPDRVFVGGLP----YYFT-------E 308 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~--~~~~~~~~~~~l~v~nLp----~~~t-------~ 308 (522)
++|+|+.++-.....-...+. ......+. ....+-.+ ....-....++|.|.||= ...+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999998765221111000000 00000000 00000001 112223455789999982 2233 3
Q ss_pred HHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 309 ~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
++|.+.+++||.|..|.|.-. .+.|.+-|.|.+.++|..||..|+|++|+|++|......-+
T Consensus 291 edl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 678888999999999988743 35788999999999999999999999999999999987543
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.8e-14 Score=125.23 Aligned_cols=82 Identities=29% Similarity=0.441 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
...+|.|.||+.+++|.+|.++|.+||.|..|.|.++++||.++|||||.|.+.++|++||+.|||+-+..-.|.|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 009944 373 AS 374 (522)
Q Consensus 373 ~~ 374 (522)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 74
No 64
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.54 E-value=1.4e-13 Score=131.60 Aligned_cols=172 Identities=16% Similarity=0.276 Sum_probs=124.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
.....|.+++||+++|++||.++|+.+ .|+.+.+.+. +|+..|-|||+|.+.+++++||+ .+...++.+-|.|.-+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 344578899999999999999999998 4666666654 89999999999999999999998 7778899999999987
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
......- .. ...+ ........-+++-.|+..++.+ ||.+||
T Consensus 84 ~~~e~d~-------------------~~-~~~g------~~s~~~d~vVRLRGLPfscte~-------------dI~~FF 124 (510)
T KOG4211|consen 84 GGAEADW-------------------VM-RPGG------PNSSANDGVVRLRGLPFSCTEE-------------DIVEFF 124 (510)
T ss_pred CCccccc-------------------cc-cCCC------CCCCCCCceEEecCCCccCcHH-------------HHHHHh
Confidence 6532100 00 0000 0000111333444466666665 999999
Q ss_pred hccCCeEE-EEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 452 GKYGTLVN-VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 452 ~~~G~I~~-v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
+..-.|.. |.++.+. .+.+ .|-|||+|++.+.|++|+.. |.+.|+-+-|.|--+.
T Consensus 125 aGL~Iv~~gi~l~~d~-rgR~---tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 125 AGLEIVPDGILLPMDQ-RGRP---TGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred cCCcccccceeeeccC-CCCc---ccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 98777666 4455544 5544 68999999999999999985 7777888887775433
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=6e-14 Score=104.02 Aligned_cols=70 Identities=27% Similarity=0.580 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 297 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
|||+|||+.+++++|.++|+.||.|..+.+..++. |..+|+|||+|.+.++|.+|+..++|..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999874
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=5.2e-14 Score=109.65 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
..+++|||+||.+.++|++|.++|+++|.|..|.+-.|+.+..+-|||||+|.+.++|..||.-++|..+..++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 34579999999999999999999999999999999999888899999999999999999999999999999999999986
Q ss_pred c
Q 009944 372 T 372 (522)
Q Consensus 372 ~ 372 (522)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.1e-13 Score=125.43 Aligned_cols=85 Identities=28% Similarity=0.593 Sum_probs=77.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 288 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
......+++|+|.|||+..-+-||+.+|.+||.|.+|.|+.+ ..-|||||||+|++.++|++|.++|||..+.|++|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 334566789999999999999999999999999999999987 356899999999999999999999999999999999
Q ss_pred EEEccCC
Q 009944 368 VRRATAS 374 (522)
Q Consensus 368 v~~~~~~ 374 (522)
|..++..
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9998765
No 68
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=4.7e-14 Score=119.30 Aligned_cols=84 Identities=24% Similarity=0.431 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
.+....|.|-||-+.|+.++|+.+|++||.|-+|.|+.|+.|+.++|||||.|....+|+.|+++|+|..|.|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
|.-.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 8654
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.50 E-value=6e-13 Score=124.76 Aligned_cols=206 Identities=17% Similarity=0.302 Sum_probs=131.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHH-hcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
.+.+||.|||+++.+++|+++|. +.|.|++|.|..| ++|+++|+|.|||+++|.++||++.||.+.+.|++|.|+-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 34599999999999999999998 7899999999999 589999999999999999999999999999999999998654
Q ss_pred CCCCC----------------------------------------CchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCc
Q 009944 373 ASSGQ----------------------------------------SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGM 412 (522)
Q Consensus 373 ~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 412 (522)
..... ...+.+.... .-....+.+........+..+..+
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr-~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSR-RNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCccccccccc-ccCccccccccccchhhhcccchh
Confidence 31000 0000000000 000000000000000000000000
Q ss_pred CCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHH
Q 009944 413 SLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 492 (522)
Q Consensus 413 ~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai 492 (522)
.-. .+.. ++....-+..|+.++.|.-=...|++.|.--|+|+.|.+--++ .|.. .|+|.++|.++-+|..||
T Consensus 202 ~Fl--r~~h--~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s---~G~~vi~y~hpveavqaI 273 (608)
T KOG4212|consen 202 SFL--RSLH--IFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNS---RGFAVIEYDHPVEAVQAI 273 (608)
T ss_pred hhh--hhcc--CCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-cccc---CCeeEEEecchHHHHHHH
Confidence 000 0000 0011111122233333333335899999999999999877766 3443 479999999999999999
Q ss_pred HHHhCCccCCeEEEEEE
Q 009944 493 NALSGRKFGGNTVNAFY 509 (522)
Q Consensus 493 ~~lng~~~~Gr~l~v~~ 509 (522)
..|++.-+..++..+.+
T Consensus 274 sml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 274 SMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HhhccCCCccccceeec
Confidence 99998777777777666
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.49 E-value=2e-13 Score=136.86 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=71.5
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
....++||||++|+..+++.||.++|+.||. |..+.+...+|||||.+.+..+|.+|| +|+...+.+
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGe------------iqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGE------------IQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhccc------------ceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccc
Confidence 3456789999999999999999999999998 788888999999999999999999999 899999999
Q ss_pred ceEEEecCCCC
Q 009944 249 VAVRVRRPTDY 259 (522)
Q Consensus 249 ~~~~v~~~~~~ 259 (522)
+.|+|.|+-.+
T Consensus 485 k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 485 KTIKIAWAVGK 495 (894)
T ss_pred eeeEEeeeccC
Confidence 99999996543
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.2e-13 Score=113.97 Aligned_cols=75 Identities=21% Similarity=0.431 Sum_probs=70.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+||+..+++.||..+|..||+|..|.|...+ .|||||+|+++.+|..|+..|+|..|.|..|.|.+++-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4689999999999999999999999999999998864 69999999999999999999999999999999999865
No 72
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.47 E-value=1.2e-11 Score=122.45 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=137.4
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceE
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~ 251 (522)
...+.+-+.+++++..+.++++||...-. ......++..-....|-++|+|.....+++|+.-|...+-.+.+
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~~-------~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~ 381 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRNA-------QSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPF 381 (944)
T ss_pred chhheeeecccccccccchhhhhcCcccc-------cccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcce
Confidence 45566778899999999999999885421 11111222222233799999999999999999988888889999
Q ss_pred EEecCCCCCccccccCCCCCCCCCc--------ccccccCCCCCC--CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc
Q 009944 252 RVRRPTDYNPTLAAALGPGQPSPNL--------NLAAVGLASGAI--GGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 321 (522)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i 321 (522)
.|..+.+.....+.......+.+.. ........++.. ....-..+|||..||..+++.++.++|...-.|
T Consensus 382 q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~V 461 (944)
T KOG4307|consen 382 QTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAV 461 (944)
T ss_pred eecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhh
Confidence 9987766554433322211111100 000000111111 122334689999999999999999999987777
Q ss_pred eE-EEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 322 HG-FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 322 ~~-v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
++ |.|...+ ++.-++.|||+|..++++.+|+..-+.++++.+.|.|.-...+
T Consensus 462 ed~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 462 EDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred hheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 76 6666654 7888999999999999999999888888999999999976654
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3.4e-13 Score=120.72 Aligned_cols=81 Identities=27% Similarity=0.511 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
.+-+||||.-|+.+++|..|+..|+.||+|+.|.|+.+..||+++|||||+|++.-+...|.+..+|.+|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred c
Q 009944 372 T 372 (522)
Q Consensus 372 ~ 372 (522)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 4
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3e-13 Score=121.99 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. ++|||||+|.+.++|..||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 36899999999999999999999999999999998753 57999999999999999996 999999999999999864
No 75
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1e-13 Score=120.31 Aligned_cols=79 Identities=28% Similarity=0.562 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+||++.+..+.|+++|++||.|++..|+.|+.+|+++|||||+|.+.+.|.+|++..+ -.|+|+...|.+|..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 4689999999999999999999999999999999999999999999999999999999998554 788999999988765
No 76
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.5e-14 Score=119.71 Aligned_cols=80 Identities=34% Similarity=0.674 Sum_probs=76.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
.-|||+|||+..||.||...|++||.|..|.|++|+.||+++||||+.|++.-+..-|+..|||..|.|+.|+|......
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999987553
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2.3e-12 Score=96.61 Aligned_cols=79 Identities=23% Similarity=0.474 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
+...-|||.|||+.+|.+++.++|.+||.|..|+|-..+ ..+|.|||.|++..+|.+|+..|+|..+.++.|.|-|.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 344679999999999999999999999999999987654 45899999999999999999999999999999999998
Q ss_pred cC
Q 009944 372 TA 373 (522)
Q Consensus 372 ~~ 373 (522)
++
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 65
No 78
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.43 E-value=6.5e-13 Score=112.31 Aligned_cols=68 Identities=15% Similarity=0.330 Sum_probs=62.3
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
++|+++|++||.|..|.|+.+..++.. +|||||+|.+.++|+.||+.|||..|+|++|+|.++.+..-
T Consensus 49 ~~L~~~F~~~G~I~~v~i~~d~~tg~~---kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 49 ASLRDAFAHFGDVVDAKVIVDRETGRS---RGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred HHHHHHHhcCCCeEEEEEEecCCCCCc---ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 499999999999999999999877765 78999999999999999999999999999999999876543
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.2e-13 Score=107.05 Aligned_cols=82 Identities=27% Similarity=0.390 Sum_probs=78.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.+-|||.++...++|++|.+.|..||.|..|.|-.|..||-.+|||+|+|.+.++|++|+.+|||..|.|..|.|.|+-.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 009944 374 SS 375 (522)
Q Consensus 374 ~~ 375 (522)
+.
T Consensus 152 ~g 153 (170)
T KOG0130|consen 152 KG 153 (170)
T ss_pred cC
Confidence 43
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.41 E-value=2.8e-12 Score=109.93 Aligned_cols=188 Identities=18% Similarity=0.226 Sum_probs=120.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeC-CCCCCcceEEEEEEcChHHHHHHHHHHcCCcc---CCeEEEE
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD-RDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTLTV 368 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~-~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~~l~v 368 (522)
..+||||.+||.++...+|+.+|..|-.-+...|... +.....+-+|||.|.+..+|..|+++|||..| .+..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999999877766655443 22234467999999999999999999999998 5789999
Q ss_pred EEccCCCCCCchH------HHHHHHH------HHHHHHHHHHHhhccC--CccCCCCc--------------------C-
Q 009944 369 RRATASSGQSKTE------QESILAQ------AQQHIAIQKMALQTSG--MNTLGGGM--------------------S- 413 (522)
Q Consensus 369 ~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~~~~~~~~~--~~~~g~~~--------------------~- 413 (522)
.+++...+..... ....+.. ......++.......+ ...++... |
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9987654221110 0000000 0000001110000000 00000000 0
Q ss_pred ---------CC-----CCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEE
Q 009944 414 ---------LF-----GETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVF 479 (522)
Q Consensus 414 ---------~~-----~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~af 479 (522)
.. .=.+.+|-+|...++++ +|+.+|+.|--...++|... .|.-+||
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed-------------~l~~~~~~~~gf~~l~~~~~-------~g~~vaf 252 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTED-------------ELKQLLSRYPGFHILKIRAR-------GGMPVAF 252 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHH-------------HHHHHHHhCCCceEEEEecC-------CCcceEe
Confidence 00 00123344555555554 89999999988877777542 3446899
Q ss_pred EEecChHhHHHHHHHHhCCcc
Q 009944 480 LEYYDAVGCATAKNALSGRKF 500 (522)
Q Consensus 480 V~F~~~~~A~~Ai~~lng~~~ 500 (522)
|+|+..+.|..||..|+|..+
T Consensus 253 ~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 253 ADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ecHHHHHHHHHHHHHhhccee
Confidence 999999999999999999876
No 81
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=3.6e-12 Score=123.02 Aligned_cols=80 Identities=35% Similarity=0.710 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
..+|||+|||..+++++|.++|..||.|..|.+..++.+|.++|||||+|.+.++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999753
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.5e-12 Score=123.93 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcCh--HHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP--AVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~--~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
..+|||+||++.+++++|...|+.||.|..|.|++ ++| +|||||+|.+. .++.+||..|||..+.|+.|+|..|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 46899999999999999999999999999999994 477 89999999987 7899999999999999999999998
Q ss_pred cC
Q 009944 372 TA 373 (522)
Q Consensus 372 ~~ 373 (522)
.+
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 65
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2.8e-12 Score=95.33 Aligned_cols=72 Identities=39% Similarity=0.691 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEE
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (522)
+|+|+|||..+++++|.++|..||.|..+.+..++ +.++|+|||+|.+.++|..|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7788999999999999999999999999999998873
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=3e-12 Score=113.56 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
..+|||+||++.+|+++|+++|+.||.|..|.|+.+. ...|||||+|.++++|..|+. |+|..|.++.|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 3699999999999999999999999999999999873 456899999999999999995 999999999999998654
No 85
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=3.1e-12 Score=89.91 Aligned_cols=56 Identities=23% Similarity=0.438 Sum_probs=50.8
Q ss_pred HHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEe
Q 009944 447 MREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510 (522)
Q Consensus 447 l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~ 510 (522)
|.++|++||+|..|.+.... .|+|||+|.+.++|..|++.|||..|+|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997754 379999999999999999999999999999999985
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.36 E-value=1e-12 Score=111.28 Aligned_cols=79 Identities=27% Similarity=0.340 Sum_probs=69.0
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
..++|.||.+-.++ ++|+.+|++||.|-+|.|+.+..+... .|||||.|....||+.|+++|+|
T Consensus 14 ~SLkVdNLTyRTsp-------------d~LrrvFekYG~vgDVyIPrdr~Tr~s---RgFaFVrf~~k~daedA~damDG 77 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSP-------------DDLRRVFEKYGRVGDVYIPRDRYTRQS---RGFAFVRFHDKRDAEDALDAMDG 77 (256)
T ss_pred eeEEecceeccCCH-------------HHHHHHHHHhCcccceecccccccccc---cceeEEEeeecchHHHHHHhhcc
Confidence 44555556555555 499999999999999999999999876 78999999999999999999999
Q ss_pred CccCCeEEEEEEeCC
Q 009944 498 RKFGGNTVNAFYYPE 512 (522)
Q Consensus 498 ~~~~Gr~l~v~~~~~ 512 (522)
.+++|+.|.|+++.-
T Consensus 78 ~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 78 AVLDGRELRVQMARY 92 (256)
T ss_pred eeeccceeeehhhhc
Confidence 999999999998764
No 87
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.5e-12 Score=93.89 Aligned_cols=71 Identities=38% Similarity=0.700 Sum_probs=66.9
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEE
Q 009944 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (522)
Q Consensus 299 v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (522)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999987788999999999999999999999999999999998873
No 88
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.33 E-value=4.8e-12 Score=114.29 Aligned_cols=76 Identities=25% Similarity=0.358 Sum_probs=66.7
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec---CCCcEEEEEEeCHHHHHHHHHhcCceecCce
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN---HEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 250 (522)
.++|||+|||+.+|+++|+++|..||. |.++.+. ..+|||||+|.++++|..||.|+|..|.|+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~------------I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGD------------IEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 468999999999999999999999998 4444443 3579999999999999999999999999999
Q ss_pred EEEecCCCCCc
Q 009944 251 VRVRRPTDYNP 261 (522)
Q Consensus 251 ~~v~~~~~~~~ 261 (522)
|.|.+...+..
T Consensus 72 V~Vt~a~~~~~ 82 (260)
T PLN03120 72 VTITPAEDYQL 82 (260)
T ss_pred EEEEeccCCCC
Confidence 99998776643
No 89
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=1.6e-12 Score=119.98 Aligned_cols=192 Identities=20% Similarity=0.187 Sum_probs=129.8
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE--ecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEE
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY--INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~ 252 (522)
-.|-+.+||++.|+.++.+||..-..+.+ ..+-|.-|. -++..|-|||.|..+++|+.|+..+...++.+-|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~-----g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTG-----GTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccC-----CccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHH
Confidence 35888999999999999999985544432 122344444 35567999999999999999997777777766666
Q ss_pred EecCCCCCccccccCCCCCCCCC-cccccccCCCC-CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceE--EEEe
Q 009944 253 VRRPTDYNPTLAAALGPGQPSPN-LNLAAVGLASG-AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHG--FDLV 327 (522)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~--v~~~ 327 (522)
+-++...+-........+.+... .........+. .........+|.+++||+..+.++|.++|..|.. |.. |.++
T Consensus 237 lFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv 316 (508)
T KOG1365|consen 237 LFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMV 316 (508)
T ss_pred HHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEE
Confidence 64432211110000000000000 00000000010 0111223568999999999999999999998876 333 6777
Q ss_pred eCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 328 ~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
.+ ..|...|.|||+|.+.+.|..|....+.....++.|.|..+.
T Consensus 317 ~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 317 LN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred Ec-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 76 478999999999999999999999999888889999998763
No 90
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.31 E-value=3e-11 Score=121.47 Aligned_cols=75 Identities=27% Similarity=0.483 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
+||||++|+..+++.||.++|+.||.|.+|.++.. +|||||.+....+|.+||.+|+...+.++.|+|.|+-.+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 59999999999999999999999999999998764 789999999999999999999999999999999999664
Q ss_pred C
Q 009944 375 S 375 (522)
Q Consensus 375 ~ 375 (522)
.
T Consensus 496 G 496 (894)
T KOG0132|consen 496 G 496 (894)
T ss_pred C
Confidence 3
No 91
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=4.7e-12 Score=98.87 Aligned_cols=80 Identities=24% Similarity=0.404 Sum_probs=68.5
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC------CCcEEEEEEeCHHHHHHHH-Hh
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-AL 241 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~a~~a~-~~ 241 (522)
.+...+++|||+||++.++|++|.++|..+|+| ..+.++. .-|||||+|.+.++|+.|| -+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~i------------rriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryi 98 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDI------------RRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYI 98 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccch------------heeEeccccCCcCccceEEEEEecchhHHHHHHHh
Confidence 456788999999999999999999999999984 4444443 3499999999999999999 59
Q ss_pred cCceecCceEEEecCCCCC
Q 009944 242 DGIIFEGVAVRVRRPTDYN 260 (522)
Q Consensus 242 ~~~~~~g~~~~v~~~~~~~ 260 (522)
++..+..++|.|.|...+.
T Consensus 99 sgtrLddr~ir~D~D~GF~ 117 (153)
T KOG0121|consen 99 SGTRLDDRPIRIDWDAGFV 117 (153)
T ss_pred ccCcccccceeeeccccch
Confidence 9999999999999855443
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.6e-12 Score=110.96 Aligned_cols=83 Identities=20% Similarity=0.402 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..++|||++|...++|.-|...|-+||.|..|.++.|-++++.+|||||+|.-.|+|..||..||+..|.|+.|+|.+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 009944 373 ASS 375 (522)
Q Consensus 373 ~~~ 375 (522)
|..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 764
No 93
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.29 E-value=6.1e-12 Score=123.47 Aligned_cols=80 Identities=36% Similarity=0.684 Sum_probs=77.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
..|||+|||+++++++|.++|+..|.|..++++.|+++|..+|||||+|.+.++|.+|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998653
No 94
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.29 E-value=6.6e-12 Score=92.99 Aligned_cols=66 Identities=36% Similarity=0.631 Sum_probs=56.2
Q ss_pred eEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE---ecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEE
Q 009944 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (522)
Q Consensus 177 v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~---~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~ 252 (522)
|||+|||+.+|+++|+++|.+||.+.. ..+. .+..++||||+|.+.++|..|+ .+++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~----------~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIES----------IKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEE----------EEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccc----------ccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999998532 1122 2345799999999999999999 5999999999885
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=3.2e-11 Score=90.07 Aligned_cols=74 Identities=38% Similarity=0.689 Sum_probs=68.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
+|+|+|||..+++++|.++|..||.|..+.+..++.+ ...|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987643 7789999999999999999999999999999999874
No 96
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=8.2e-12 Score=113.37 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=69.1
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
.-+.|-+++..+-+. ||+.+|++||+|.+|.|+.++. | +||+| ||+|++++||.+|-++|||
T Consensus 97 kRLhVSNIPFrFRdp-------------DL~aMF~kfG~VldVEIIfNER-G--SKGFG--FVTmen~~dadRARa~LHg 158 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDP-------------DLRAMFEKFGKVLDVEIIFNER-G--SKGFG--FVTMENPADADRARAELHG 158 (376)
T ss_pred ceeEeecCCccccCc-------------cHHHHHHhhCceeeEEEEeccC-C--CCccc--eEEecChhhHHHHHHHhhc
Confidence 445566666655554 9999999999999999998763 3 45555 9999999999999999999
Q ss_pred CccCCeEEEEEEeCCcccccc
Q 009944 498 RKFGGNTVNAFYYPEDKYFNK 518 (522)
Q Consensus 498 ~~~~Gr~l~v~~~~~~~~~~~ 518 (522)
..+.||+|.|..++....+++
T Consensus 159 t~VEGRkIEVn~ATarV~n~K 179 (376)
T KOG0125|consen 159 TVVEGRKIEVNNATARVHNKK 179 (376)
T ss_pred ceeeceEEEEeccchhhccCC
Confidence 999999999999998766554
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=2.1e-11 Score=117.60 Aligned_cols=168 Identities=23% Similarity=0.294 Sum_probs=112.0
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEE
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~ 252 (522)
..+|||+|||..+|+++|.++|..||.+.... ++.+..++..+|||||+|.+.++|..|+ .+++..|.|+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~------~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR------LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE------eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 68999999999999999999999999864321 1223345788999999999999999999 6999999999999
Q ss_pred EecCCC-CCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC
Q 009944 253 VRRPTD-YNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331 (522)
Q Consensus 253 v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~ 331 (522)
|.+... ........ .. ......................+++.+++..++..++...|..+|.+..+.+.....
T Consensus 189 v~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 189 VQKAQPASQPRSELS-----NN-LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred eeccccccccccccc-----cc-cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 998543 10000000 00 000000000111122234456799999999999999999999999997666665543
Q ss_pred CCCcceEEEEEEcChHHHHHHH
Q 009944 332 TGNSKGYGFCVYQDPAVTDIAC 353 (522)
Q Consensus 332 ~g~~~g~afV~f~~~~~A~~Al 353 (522)
........++.+.....+..++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 263 GKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred CcccccccccchhHHHhhhhhh
Confidence 3333333444444444444333
No 98
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=7.9e-12 Score=103.40 Aligned_cols=73 Identities=32% Similarity=0.479 Sum_probs=65.1
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCcEEEEEEeCHHHHHHHH-HhcCceecCceE
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~ 251 (522)
.++|||+||+..+++.||...|..||+ +..|++. ...|||||+|+++.+|+.|+ .|+|..|.|..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~------------lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGP------------LRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCc------------ceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceE
Confidence 678999999999999999999999997 5666654 45799999999999999999 799999999999
Q ss_pred EEecCCC
Q 009944 252 RVRRPTD 258 (522)
Q Consensus 252 ~v~~~~~ 258 (522)
.|+....
T Consensus 78 rVE~S~G 84 (195)
T KOG0107|consen 78 RVELSTG 84 (195)
T ss_pred EEEeecC
Confidence 9986543
No 99
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=2.7e-11 Score=89.19 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=55.0
Q ss_pred HHHHHHHHH----hcCCceEEE-EeeCCCC--CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEE
Q 009944 308 ETQIKELLE----SFGTLHGFD-LVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (522)
Q Consensus 308 ~~~l~~~F~----~~G~i~~v~-~~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (522)
+++|.++|. +||.|..|. ++.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 7776666 899999999999999999999999999999999986
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=2.8e-11 Score=89.16 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=48.8
Q ss_pred HHHHHHhhccCCeEEEE-ecCCCCC--CCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEE
Q 009944 445 EDMREECGKYGTLVNVV-IPRPDQN--GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~-i~~~~~~--g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~ 508 (522)
+.+.++|++||.|.+|. |+.+..+ +.. +|+|||+|.+.++|.+|+..|||..|.|++|.++
T Consensus 7 ~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~---rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 7 REFSEEEEYFGEVGKINKIYIDNVGYENHK---RGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred HHHHHHHHhcCCeeEEEEEEeCCCCCCCCC---cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 34444445999999995 5555544 443 6888999999999999999999999999999873
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.24 E-value=3.4e-11 Score=84.56 Aligned_cols=56 Identities=23% Similarity=0.486 Sum_probs=50.8
Q ss_pred HHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 311 l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
|.++|++||.|..|.+.... +++|||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987653 589999999999999999999999999999999986
No 102
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=8.2e-12 Score=108.59 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=68.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCce
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 250 (522)
...-.+|||+||++.++.++|+++|++||+|+..+ +|.|..+++++|||||+|.+.+.|++|++-..-.|+|++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eav------vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~ 82 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAV------VITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRK 82 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEE------EEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccc
Confidence 34457899999999999999999999999986533 466777899999999999999999999977777889988
Q ss_pred EEEecC
Q 009944 251 VRVRRP 256 (522)
Q Consensus 251 ~~v~~~ 256 (522)
.-++.+
T Consensus 83 aNcnlA 88 (247)
T KOG0149|consen 83 ANCNLA 88 (247)
T ss_pred cccchh
Confidence 777643
No 103
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4e-11 Score=104.66 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=71.8
Q ss_pred CCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 417 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 417 ~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
...++|-+|+...++. +|.++|.+||.|..|.|.++..+|.. +|||||.|.+.++|.+||..||
T Consensus 189 ~~tvRvtNLsed~~E~-------------dL~eLf~~fg~i~rvylardK~TG~~---kGFAFVtF~sRddA~rAI~~Ln 252 (270)
T KOG0122|consen 189 EATVRVTNLSEDMRED-------------DLEELFRPFGPITRVYLARDKETGLS---KGFAFVTFESRDDAARAIADLN 252 (270)
T ss_pred cceeEEecCccccChh-------------HHHHHhhccCccceeEEEEccccCcc---cceEEEEEecHHHHHHHHHHcc
Confidence 4556676776665554 99999999999999999999999987 7899999999999999999999
Q ss_pred CCccCCeEEEEEEeCCc
Q 009944 497 GRKFGGNTVNAFYYPED 513 (522)
Q Consensus 497 g~~~~Gr~l~v~~~~~~ 513 (522)
|+-++.=.|.|+|..+.
T Consensus 253 G~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 253 GYGYDNLILRVEWSKPS 269 (270)
T ss_pred CcccceEEEEEEecCCC
Confidence 99999999999998764
No 104
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=7.3e-13 Score=109.90 Aligned_cols=90 Identities=27% Similarity=0.365 Sum_probs=80.3
Q ss_pred cchhhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 166 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
.+.+....+.-|||+|||+.+||.||.-.|++||.+++.|+ |.+..+++++||||+.|++......|+ .|||.
T Consensus 27 SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinL------iRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 27 SWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINL------IRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred chhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEE------EecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence 34456677888999999999999999999999999988775 888899999999999999999999999 79999
Q ss_pred eecCceEEEecCCCCCc
Q 009944 245 IFEGVAVRVRRPTDYNP 261 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~~~ 261 (522)
.|.|+.|+|.....|..
T Consensus 101 ki~gRtirVDHv~~Yk~ 117 (219)
T KOG0126|consen 101 KILGRTIRVDHVSNYKK 117 (219)
T ss_pred eecceeEEeeecccccC
Confidence 99999999987666543
No 105
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.19 E-value=6.3e-11 Score=105.23 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=65.6
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---cCCCcEEEEEEeCHHHHHHHHHhcCceecCce
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 250 (522)
..+|||+||++.+|+++|++||+.||.| .++.+ +..++||||+|.++++|+.|+.|+|..|.+++
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I------------~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAI------------EHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCe------------EEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCce
Confidence 3589999999999999999999999984 44444 44568999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 009944 251 VRVRRPTDYN 260 (522)
Q Consensus 251 ~~v~~~~~~~ 260 (522)
|.|.....|.
T Consensus 73 I~It~~~~y~ 82 (243)
T PLN03121 73 VCITRWGQYE 82 (243)
T ss_pred EEEEeCcccc
Confidence 9998766654
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.1e-10 Score=110.97 Aligned_cols=154 Identities=23% Similarity=0.298 Sum_probs=113.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE-------ecCCCc---EEEEEEeCHHHHHHHH-
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY-------INHEKK---FAFVEMRTVEEASNAM- 239 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~-------~~~~~g---~afV~f~~~~~a~~a~- 239 (522)
..-+++||||+||++++|+.|...|..||.++ ++-. .-..+| |+|+.|+++..+...+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-----------VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-----------VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-----------eecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 34578999999999999999999999999853 2222 112356 9999999999988877
Q ss_pred H-hc-C--cee-------cCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCH
Q 009944 240 A-LD-G--IIF-------EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 308 (522)
Q Consensus 240 ~-~~-~--~~~-------~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~ 308 (522)
+ .. . ..| ..+.|+|....-.+ ...........++.+||||++||--++.
T Consensus 325 aC~~~~~~~yf~vss~~~k~k~VQIrPW~laD--------------------s~fv~d~sq~lDprrTVFVGgvprpl~A 384 (520)
T KOG0129|consen 325 ACSEGEGNYYFKVSSPTIKDKEVQIRPWVLAD--------------------SDFVLDHNQPIDPRRTVFVGGLPRPLTA 384 (520)
T ss_pred HHhhcccceEEEEecCcccccceeEEeeEecc--------------------chhhhccCcccCccceEEecCCCCcchH
Confidence 2 11 1 111 12223332111110 0111112233566689999999999999
Q ss_pred HHHHHHHH-hcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHH
Q 009944 309 TQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (522)
Q Consensus 309 ~~l~~~F~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 355 (522)
++|..+|+ .||.|..+-|-.|++-+-++|-|=|.|.+...-.+||.+
T Consensus 385 ~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 385 EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99999999 899999999999988899999999999999999999874
No 107
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.16 E-value=5.4e-11 Score=88.01 Aligned_cols=64 Identities=36% Similarity=0.644 Sum_probs=53.3
Q ss_pred eEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-----CcEEEEEEeCHHHHHHHHH-hcCceecCce
Q 009944 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-----KKFAFVEMRTVEEASNAMA-LDGIIFEGVA 250 (522)
Q Consensus 177 v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 250 (522)
|||+|||+++++++|.++|..+|. |..+.+... +++|||+|.++++|..|+. +++..|.|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~------------v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGP------------VEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSB------------EEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCC------------cceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 799999999999999999999986 555554433 6999999999999999994 6669999998
Q ss_pred EE
Q 009944 251 VR 252 (522)
Q Consensus 251 ~~ 252 (522)
|+
T Consensus 69 l~ 70 (70)
T PF14259_consen 69 LR 70 (70)
T ss_dssp EE
T ss_pred cC
Confidence 74
No 108
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=2.3e-10 Score=85.97 Aligned_cols=63 Identities=29% Similarity=0.503 Sum_probs=56.8
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
+++.++|.+||.|..|.|-..+.+ +|.|||.|++..+|.+|+..|+|..+.++.|.|-|+...
T Consensus 33 eemydlFGkyg~IrQIRiG~~k~T------rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 33 EEMYDLFGKYGTIRQIRIGNTKET------RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred HHHHHHhhcccceEEEEecCccCc------CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 499999999999999999665533 589999999999999999999999999999999997753
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1e-10 Score=92.23 Aligned_cols=81 Identities=25% Similarity=0.245 Sum_probs=71.1
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
+.+.-.|||.++...+|+++|.+.|..||+|+++++ -.+..++-.+|||+|+|.+.++|++|+ .+||..|.|+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihL------NLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHL------NLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceee------ccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 344457999999999999999999999999876554 456677788999999999999999999 7999999999
Q ss_pred eEEEecCC
Q 009944 250 AVRVRRPT 257 (522)
Q Consensus 250 ~~~v~~~~ 257 (522)
+|.|.|.-
T Consensus 143 ~v~VDw~F 150 (170)
T KOG0130|consen 143 NVSVDWCF 150 (170)
T ss_pred ceeEEEEE
Confidence 99999854
No 110
>smart00362 RRM_2 RNA recognition motif.
Probab=99.05 E-value=9.1e-10 Score=81.57 Aligned_cols=67 Identities=37% Similarity=0.615 Sum_probs=57.7
Q ss_pred eeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC----CCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 176 ~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
+|+|+|||..+++++|+++|..||.+ ..+.+.. .+|+|||+|.+.++|+.|+ .+++..+.|+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v------------~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPI------------ESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCE------------EEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 58999999999999999999999974 4444333 4699999999999999999 68999999999
Q ss_pred EEEe
Q 009944 251 VRVR 254 (522)
Q Consensus 251 ~~v~ 254 (522)
|.|+
T Consensus 69 i~v~ 72 (72)
T smart00362 69 LRVE 72 (72)
T ss_pred EeeC
Confidence 8873
No 111
>PLN03213 repressor of silencing 3; Provisional
Probab=99.05 E-value=4.6e-10 Score=107.28 Aligned_cols=73 Identities=19% Similarity=0.403 Sum_probs=62.4
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec--CCCcEEEEEEeCH--HHHHHHH-HhcCceecC
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTV--EEASNAM-ALDGIIFEG 248 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~--~~~g~afV~f~~~--~~a~~a~-~~~~~~~~g 248 (522)
..+||||||++.+|+++|..+|..||.|. ++.+. ..+|||||+|.+. .++.+|+ .|||..|.|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVk------------dVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG 77 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVD------------AVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG 77 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCee------------EEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC
Confidence 46899999999999999999999999854 33322 2389999999987 6799999 699999999
Q ss_pred ceEEEecCCC
Q 009944 249 VAVRVRRPTD 258 (522)
Q Consensus 249 ~~~~v~~~~~ 258 (522)
+.|+|..+++
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 9999987664
No 112
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.04 E-value=7.7e-10 Score=94.57 Aligned_cols=81 Identities=31% Similarity=0.515 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc-CCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESF-GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
....++|..+|..+.+.+|..+|.+| |.|..+++.+++.||.++|||||+|++.+.|..|-+.||+..|.++.|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34579999999999999999999998 67888999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 009944 372 TA 373 (522)
Q Consensus 372 ~~ 373 (522)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 55
No 113
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=4.4e-11 Score=102.48 Aligned_cols=144 Identities=23% Similarity=0.307 Sum_probs=119.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC----CcEEEEEEeCHHHHHHHH-HhcCce
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE----KKFAFVEMRTVEEASNAM-ALDGII 245 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~a~~a~-~~~~~~ 245 (522)
.+..++|||+|+...++++-|.++|-+.|+ |+.|.+... ..||||.|.++-.+.-|+ -+||..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGP------------V~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~ 73 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGP------------VYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDD 73 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCc------------eEEEeCCCCccCCCceeeeecccccchhhhhhhcccch
Confidence 345689999999999999999999999987 666666432 349999999999999999 589999
Q ss_pred ecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHHHhcCCc
Q 009944 246 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGG----LPYYFTETQIKELLESFGTL 321 (522)
Q Consensus 246 ~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----Lp~~~t~~~l~~~F~~~G~i 321 (522)
+.+..++|+ ++.++ |...++++.+...|+..|++
T Consensus 74 l~~~e~q~~------------------------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~ 111 (267)
T KOG4454|consen 74 LEEDEEQRT------------------------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPI 111 (267)
T ss_pred hccchhhcc------------------------------------------cccCCCcchhhhhcchhhheeeecccCCC
Confidence 999998885 44455 77789999999999999999
Q ss_pred eEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEE
Q 009944 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (522)
Q Consensus 322 ~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (522)
..+++..+. +|.++.++|+.+......-.++....+..+.-+++.+.
T Consensus 112 ~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~g 158 (267)
T KOG4454|consen 112 EGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIG 158 (267)
T ss_pred CCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcccc
Confidence 999999885 48888899999998888888888777765554444443
No 114
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.02 E-value=8.3e-10 Score=97.05 Aligned_cols=132 Identities=22% Similarity=0.345 Sum_probs=107.4
Q ss_pred EecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCC
Q 009944 217 YINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD 295 (522)
Q Consensus 217 ~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (522)
.-+.-.+++|+.|.....-.++- +-+++.+.-.+|++.....++.... ..-.+...
T Consensus 135 ~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl-----------------------~ew~~~Df 191 (290)
T KOG0226|consen 135 RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSL-----------------------AEWDEDDF 191 (290)
T ss_pred CCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCccc-----------------------ccCccccc
Confidence 33455789999999877777776 5677777777777765544432210 11123446
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
+||++.|.-+++.+.|...|.+|-.....++++++.||+++||+||.|.++.++..|+..|+|..++.++|++.-.
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred eeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 8999999999999999999999999888999999999999999999999999999999999999999999998754
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.3e-10 Score=102.53 Aligned_cols=84 Identities=19% Similarity=0.388 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
..+.+.|||--|.+-|+.+||.-+|+.||+|..|.++++..||.+-.||||+|.+.+++++|.-.|++..|..+.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+...
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8653
No 116
>smart00360 RRM RNA recognition motif.
Probab=99.02 E-value=7.5e-10 Score=81.71 Aligned_cols=62 Identities=26% Similarity=0.461 Sum_probs=55.1
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEE
Q 009944 444 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508 (522)
Q Consensus 444 ~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~ 508 (522)
.++|+++|++||.|..+.+.....++.+ .|+|||+|.+.++|..|+..|+|..|+|++|.|.
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~---~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDTGKS---KGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCCCCC---CceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 3599999999999999999887655443 6899999999999999999999999999999873
No 117
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2e-10 Score=98.32 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=71.2
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||++|...+|+.-|...|-+||.|++. .+..+....+.+|||||+|.-.|+|..|| .||+..|.|+.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dI------qiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grt 81 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDI------QIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRT 81 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhc------ccccchhcccccceeEEEeeccchhHHHhhcCchhhhccee
Confidence 346799999999999999999999999997542 23455566788999999999999999999 79999999999
Q ss_pred EEEecCCCC
Q 009944 251 VRVRRPTDY 259 (522)
Q Consensus 251 ~~v~~~~~~ 259 (522)
|+|.++++.
T Consensus 82 irVN~AkP~ 90 (298)
T KOG0111|consen 82 IRVNLAKPE 90 (298)
T ss_pred EEEeecCCc
Confidence 999987654
No 118
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=7e-09 Score=93.43 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEE
Q 009944 440 YEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 509 (522)
Q Consensus 440 ~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~ 509 (522)
|.+.+.+|+.+|+.||.|+.|.|+.+..+|++ +|||||+|+..-+...|.+..+|.+|.|+.|.|.+
T Consensus 111 ydT~EskLrreF~~YG~IkrirlV~d~vTgks---kGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 111 YDTSESKLRREFEKYGPIKRIRLVRDKVTGKS---KGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred ccccHHHHHHHHHhcCcceeEEEeeecccCCc---cceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 44444699999999999999999999999987 89999999999999999999999999999999976
No 119
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=8.2e-09 Score=101.05 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=112.0
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE-ecCCCcEEEEEEeCHHHHHHHH-HhcCcee
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY-INHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~-~~~~~g~afV~f~~~~~a~~a~-~~~~~~~ 246 (522)
......++|+|-|||..+++++|..+|..||+|. .+. +....|..||+|.+..+|+.|+ +|++..+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir------------~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIR------------EIRETPNKRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchh------------hhhcccccCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 4455678999999999999999999999999964 232 4456899999999999999999 7999999
Q ss_pred cCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEE
Q 009944 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (522)
Q Consensus 247 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~ 326 (522)
.|+.|+. +...... .+......-++.....+.....++.. ...+|+ .|++.....-+...|.-+|.+.. ..
T Consensus 138 ~~~~~k~--~~~~~~~----~~~~~~~~~~~~~~~p~a~s~pgg~~-~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~ 208 (549)
T KOG4660|consen 138 AGKRIKR--PGGARRA----MGLQSGTSFLNHFGSPLANSPPGGWP-RGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE 208 (549)
T ss_pred hhhhhcC--CCccccc----chhcccchhhhhccchhhcCCCCCCc-CCccee-eeccchhhhhhhcchhccCcccc-cc
Confidence 9999882 1111100 00000000000000011111111111 122333 28888888777777778887754 21
Q ss_pred eeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
++.-.---|++|.+..++..++... |..+.+....+++..+
T Consensus 209 -----~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 209 -----TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred -----ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 2222224688888888886665533 6777777666666554
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.94 E-value=4.6e-09 Score=104.55 Aligned_cols=197 Identities=8% Similarity=-0.013 Sum_probs=118.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
+.+-+.++++.+.+.|++++|... .|..+.|..+...+.-+|.++|+|....++++|+. -|...+-.+.+.|..+...
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCcc
Confidence 346688999999999999999743 24445555554445557889999999999999976 4556667778877765432
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhccCCc-------cCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHH
Q 009944 375 SGQSKTEQESILAQAQQHIAIQKMALQTSGMN-------TLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDM 447 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l 447 (522)
.-...+.... .+. .+.........+ .+|..++... .-..|+.|.... +++.+.++
T Consensus 390 ~~~~a~~~~~----~~~---~~~~~~~hg~p~~~pr~~~~~gq~vp~P~-~ag~~lyv~~lP----------~~t~~~~~ 451 (944)
T KOG4307|consen 390 GRNGAPPFQA----GVP---PPVIQNNHGRPIAPPRAMVRPGQNVPFPG-GAGGALYVFQLP----------VMTPIVPP 451 (944)
T ss_pred ccccCccccc----cCC---CCcccccCCCCCCCcccccCCCCCCCCCC-CccceEEeccCC----------ccccccch
Confidence 2111000000 000 000000000011 1122211111 223333332221 11122488
Q ss_pred HHHhhccCCeEE-EEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 448 REECGKYGTLVN-VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 448 ~~~f~~~G~I~~-v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
.++|..--.|++ |.|..-+ ++.- .+.|||.|.+++++.+|...-+-++++.+.|+|.-+.++.+
T Consensus 452 v~~f~~~~~Ved~I~lt~~P-~~~~---~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 452 VNKFMGAAAVEDFIELTRLP-TDLL---RPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred hhhhhhhhhhhheeEeccCC-cccc---cchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 999988777777 5555444 3332 47789999999999999998888888999999988776554
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=7.2e-09 Score=106.51 Aligned_cols=161 Identities=20% Similarity=0.350 Sum_probs=129.4
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE---ecCCCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~---~~~~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
.....+++||++||+..+++.+|+..|..+|.+. -+++. ++....||||.|.+...+-.|. ++.+.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve----------~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~ 436 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVE----------EVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGP 436 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhcccc----------ccccccCCCCcccchhhhhhhccccCcccchhhcCC
Confidence 3456688999999999999999999999999742 12222 3445679999999999999998 78887
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEE
Q 009944 245 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v 324 (522)
.|..-.+++.+... .....+.+++++|+..+....|..+|..||.|..|
T Consensus 437 ~I~~g~~r~glG~~-------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~I 485 (975)
T KOG0112|consen 437 LIGNGTHRIGLGQP-------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRII 485 (975)
T ss_pred ccccCccccccccc-------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceee
Confidence 77666666654211 01233579999999999999999999999999988
Q ss_pred EEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC--eEEEEEEccCCCC
Q 009944 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASSG 376 (522)
Q Consensus 325 ~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~~~ 376 (522)
.+-.. .-||||+|.+...|+.|+..|-|..|+| +.+.|.|+.....
T Consensus 486 dy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 486 DYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred ecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 76543 3489999999999999999999999976 7799999877543
No 122
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.91 E-value=1.4e-09 Score=107.05 Aligned_cols=81 Identities=27% Similarity=0.414 Sum_probs=74.1
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEEE
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~v 253 (522)
+.|||||||+++++++|.++|...|.|+.+++ +.|-.+++.+||||++|.+.++|..|+ .|||..+.|++|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~------v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRL------VYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeee------cccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 78999999999999999999999999876554 777888999999999999999999999 69999999999999
Q ss_pred ecCCCCCc
Q 009944 254 RRPTDYNP 261 (522)
Q Consensus 254 ~~~~~~~~ 261 (522)
.|+.....
T Consensus 93 ~~~~~~~~ 100 (435)
T KOG0108|consen 93 NYASNRKN 100 (435)
T ss_pred ecccccch
Confidence 99876554
No 123
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.91 E-value=8.4e-09 Score=76.74 Aligned_cols=68 Identities=37% Similarity=0.573 Sum_probs=58.4
Q ss_pred eeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-----CCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-----EKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 176 ~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
+|+|+|||+.+++++|+++|..+|.+ ..+.+.. ..++|||+|.+.++|..|+ .+++..+.|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i------------~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKV------------ESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCE------------EEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 48999999999999999999999874 4443332 3799999999999999999 6999999999
Q ss_pred eEEEec
Q 009944 250 AVRVRR 255 (522)
Q Consensus 250 ~~~v~~ 255 (522)
.+.|.+
T Consensus 69 ~~~v~~ 74 (74)
T cd00590 69 PLRVEF 74 (74)
T ss_pred EEEEeC
Confidence 998863
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=9.4e-11 Score=119.52 Aligned_cols=154 Identities=23% Similarity=0.267 Sum_probs=128.3
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecC
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 248 (522)
.......++||.||++.+.+.+|...|..+|.+.. +.+++.+..+.-+|+|||+|..++++.+|++++...+.|
T Consensus 662 n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~------vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 662 NEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEV------VQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred hHHHHHHHHHHhhcchhhcCchhhhhcCccchhhh------HHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 34466788999999999999999999999987532 222333444556899999999999999999877766665
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEee
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~ 328 (522)
+ ..|+|.|+|+..|.++|+.+|.++|.+..+.++.
T Consensus 736 K---------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt 770 (881)
T KOG0128|consen 736 K---------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT 770 (881)
T ss_pred h---------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhh
Confidence 2 2688999999999999999999999999998887
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
.+ .|+++|.|||.|.+..+|.+++....+..+.-+.+.|...++.
T Consensus 771 ~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 771 VR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 75 7999999999999999999999988888887777777775553
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=9.2e-11 Score=119.60 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=168.2
Q ss_pred cceeEEeCCCccCcHH-HHHHHHHHHHHhhcCCCCCCCCceEEEEecC------CCcEEEEEEeCHHHHHHHHHhcCcee
Q 009944 174 ARRVYVGGLPPLANEQ-AIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAMALDGIIF 246 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~-~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~a~~a~~~~~~~~ 246 (522)
....++.++.+..... .+...|..+|. |..+.... ...++++.+.....++.|....+..+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~------------vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~ 638 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGN------------VEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGAL 638 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccc------------cccccCccccccccccchhhhhhccccchhhccccccccc
Confidence 4557777877776555 56778888876 34443332 22388999999999999998888888
Q ss_pred cCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEE
Q 009944 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (522)
Q Consensus 247 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~ 326 (522)
.++.+.|..+......... ...........++||.||+..+.+.+|...|..+|.+..+.+
T Consensus 639 a~~~~av~~ad~~~~~~~~-------------------kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi 699 (881)
T KOG0128|consen 639 ANRSAAVGLADAEEKEENF-------------------KVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQI 699 (881)
T ss_pred CCccccCCCCCchhhhhcc-------------------CcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHH
Confidence 8887777543322210000 000000112247899999999999999999999999888777
Q ss_pred eeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCc
Q 009944 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMN 406 (522)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (522)
......+..+|+|||+|..++++.+|+....++.++...|.
T Consensus 700 ~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~--------------------------------------- 740 (881)
T KOG0128|consen 700 VIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVA--------------------------------------- 740 (881)
T ss_pred HHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhh---------------------------------------
Confidence 65556888999999999999999999996665555521111
Q ss_pred cCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChH
Q 009944 407 TLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAV 486 (522)
Q Consensus 407 ~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~ 486 (522)
+-+++...+. +.++.+|..+|++.++.++... .|.+ +|.|||.|.+..
T Consensus 741 ---------------i~g~pf~gt~-------------e~~k~l~~~~gn~~~~~~vt~r-~gkp---kg~a~v~y~~ea 788 (881)
T KOG0128|consen 741 ---------------ISGPPFQGTK-------------EELKSLASKTGNVTSLRLVTVR-AGKP---KGKARVDYNTEA 788 (881)
T ss_pred ---------------eeCCCCCCch-------------HHHHhhccccCCccccchhhhh-cccc---ccceeccCCCcc
Confidence 1122222233 3899999999999999866655 6666 799999999999
Q ss_pred hHHHHHHHHhCCccCCeEEEEEE
Q 009944 487 GCATAKNALSGRKFGGNTVNAFY 509 (522)
Q Consensus 487 ~A~~Ai~~lng~~~~Gr~l~v~~ 509 (522)
+|..++..+.+..+.-+.+.|..
T Consensus 789 ~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 789 DASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhhcccchhhhhhhcCccccc
Confidence 99999999888888776666665
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.86 E-value=5.5e-09 Score=89.44 Aligned_cols=65 Identities=14% Similarity=0.296 Sum_probs=59.6
Q ss_pred HHHHHhhcc-CCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 446 DMREECGKY-GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 446 ~l~~~f~~~-G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
.|..+|.+| |.|..+.+-++..+|+. +|||||+|++.+.|..|.+.||++.|+|+-|.|.+++++
T Consensus 65 ~~~~~~~q~~g~v~r~rlsRnkrTGNS---KgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 65 EILNYFRQFGGTVTRFRLSRNKRTGNS---KGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred HHhhhhhhcCCeeEEEEeecccccCCc---CceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 777888877 77888888899999986 789999999999999999999999999999999999987
No 127
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.84 E-value=2.8e-09 Score=100.29 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=132.5
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCc-eecCceE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGI-IFEGVAV 251 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~-~~~g~~~ 251 (522)
...++|++++...+.+.++..++..+|...+.- ....-....++|+++|.|...+.+..|+++.+. .+.+..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~------~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDAR------SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccch------hhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 467899999999999999999999998643211 011122345789999999999999999987775 4444444
Q ss_pred EEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEE-EcCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 009944 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF-VGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (522)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~ 330 (522)
..-........ ..............++| |++|+..+++++|+.+|..+|.|..+++..++
T Consensus 161 ~~dl~~~~~~~-------------------~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~ 221 (285)
T KOG4210|consen 161 EKDLNTRRGLR-------------------PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE 221 (285)
T ss_pred cCccccccccc-------------------ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCC
Confidence 43322111100 00000111123344666 99999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
.++.+.|||||.|.....+..++.. +...+++.++.|.+..+.
T Consensus 222 ~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 222 ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred CccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 9999999999999999999999987 889999999999998764
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.82 E-value=3.2e-09 Score=95.04 Aligned_cols=96 Identities=30% Similarity=0.517 Sum_probs=78.6
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
.+++|+.|.|++...+..+ +++.++++.|++||+|..|.|...+..... ---..||+|+..++|.+|+-.|||
T Consensus 279 ~ptkvlllrnmVg~gevd~-----elede~keEceKyg~V~~viifeip~~p~d--eavRiFveF~r~e~aiKA~VdlnG 351 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVDE-----ELEDETKEECEKYGKVGNVIIFEIPSQPED--EAVRIFVEFERVESAIKAVVDLNG 351 (378)
T ss_pred cchHHHHhhhhcCcccccH-----HHHHHHHHHHHhhcceeeEEEEecCCCccc--hhheeeeeeccHHHHHHHHHhcCC
Confidence 7888999999988875433 345689999999999999988666433211 113479999999999999999999
Q ss_pred CccCCeEEEEEEeCCcccccccC
Q 009944 498 RKFGGNTVNAFYYPEDKYFNKDY 520 (522)
Q Consensus 498 ~~~~Gr~l~v~~~~~~~~~~~~~ 520 (522)
++|+|+.|...|+++++|.+.++
T Consensus 352 RyFGGr~v~A~Fyn~ekfs~~el 374 (378)
T KOG1996|consen 352 RYFGGRVVSACFYNLEKFSNLEL 374 (378)
T ss_pred ceecceeeeheeccHHhhhhhhh
Confidence 99999999999999999987665
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.81 E-value=3.4e-08 Score=96.22 Aligned_cols=82 Identities=20% Similarity=0.387 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||.+|...|-..+|+.+|++||.|.-.+++.+..+--.++|+||++.+.++|.+||+.||...|.|+.|.|..+..
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46899999999999999999999999999999999877777799999999999999999999999999999999998875
Q ss_pred CC
Q 009944 374 SS 375 (522)
Q Consensus 374 ~~ 375 (522)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 53
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=3.2e-09 Score=108.97 Aligned_cols=158 Identities=16% Similarity=0.263 Sum_probs=123.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
...+||++||+..+++.+|+..|..+|.|..|.|...+ -+...-||||.|.+.+.+..|...+.+..|....+.+.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 34789999999999999999999999999999887764 23344589999999999999999999988877677776654
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhh
Q 009944 373 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 452 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~ 452 (522)
++.... +...+..|..+... ..|..+|.
T Consensus 450 ~kst~t---------------------------------------tr~~sgglg~w~p~-------------~~l~r~fd 477 (975)
T KOG0112|consen 450 PKSTPT---------------------------------------TRLQSGGLGPWSPV-------------SRLNREFD 477 (975)
T ss_pred cccccc---------------------------------------eeeccCCCCCCChH-------------HHHHHHhh
Confidence 311000 11112223333222 38899999
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCC--eEEEEEEeCC
Q 009944 453 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPE 512 (522)
Q Consensus 453 ~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~G--r~l~v~~~~~ 512 (522)
.||.|..|.+-. |--||||.|++...|+.|+..|-|..|+| +.|.|.|+.+
T Consensus 478 ~fGpir~Idy~h---------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 478 RFGPIRIIDYRH---------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccCcceeeeccc---------CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 999999988843 23589999999999999999999999987 7899998764
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=2.6e-08 Score=91.75 Aligned_cols=77 Identities=17% Similarity=0.368 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHH-cCCccCCeEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVR 369 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v~ 369 (522)
.....+|||++|-..+++.+|+++|.+||.|..|.+... +++|||+|.+.+.|++|.+.+ +...|.|..|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 344578999999999999999999999999999998865 469999999999999998765 5567899999999
Q ss_pred EccC
Q 009944 370 RATA 373 (522)
Q Consensus 370 ~~~~ 373 (522)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9977
No 132
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=1.6e-08 Score=93.18 Aligned_cols=80 Identities=24% Similarity=0.365 Sum_probs=71.4
Q ss_pred chhhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHH--hcCc
Q 009944 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA--LDGI 244 (522)
Q Consensus 167 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~ 244 (522)
.+.......+|||++|-..+++.+|+++|.+||. +..+.+-..+++|||+|.+.+.|+.|.+ ++..
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGe------------irsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~l 288 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGE------------IRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKL 288 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCC------------eeeEEeecccccceeeehhhHHHHHHHHhhccee
Confidence 3345666789999999999999999999999998 7778888888999999999999999993 8888
Q ss_pred eecCceEEEecCCC
Q 009944 245 IFEGVAVRVRRPTD 258 (522)
Q Consensus 245 ~~~g~~~~v~~~~~ 258 (522)
.|.|+.|+|.|...
T Consensus 289 vI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 289 VINGFRLKIKWGRP 302 (377)
T ss_pred eecceEEEEEeCCC
Confidence 89999999999776
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.74 E-value=5.2e-08 Score=88.12 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
..+.+|+|.|||+.|+++||+++|..||.+..+.+..++ .|.+.|.|-|.|...++|.+|++.++|..+.|..|++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344689999999999999999999999999888888885 8999999999999999999999999999999999999988
Q ss_pred cCCCCC
Q 009944 372 TASSGQ 377 (522)
Q Consensus 372 ~~~~~~ 377 (522)
......
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 765433
No 134
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=3.7e-09 Score=90.85 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=113.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
+...+|||.||-..++|+-|.++|-+.|+|..|.|..++ .++.+ ||||.|.++-...-|++.+||..+.+..+.|++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 344799999999999999999999999999999998885 55656 9999999999999999999999999999999875
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
.-....+ |...++. +.+.+.|
T Consensus 85 ~G~shap----------------------------------------------ld~r~~~-------------ei~~~v~ 105 (267)
T KOG4454|consen 85 CGNSHAP----------------------------------------------LDERVTE-------------EILYEVF 105 (267)
T ss_pred cCCCcch----------------------------------------------hhhhcch-------------hhheeee
Confidence 3211110 0011111 2566778
Q ss_pred hccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCC-----------ccCCeEEEEEEeCCccc
Q 009944 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR-----------KFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 452 ~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~-----------~~~Gr~l~v~~~~~~~~ 515 (522)
+.-|.|..+.+..+.. |.. ...| ||.+.-.-..-.|+....+. .++|..|--++.+...|
T Consensus 106 s~a~p~~~~R~~~~~d-~rn-rn~~--~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ggk~Gg~~lpqsgfsPs~~ 176 (267)
T KOG4454|consen 106 SQAGPIEGVRIPTDND-GRN-RNFG--FVTYQRLCAVPFALDLYQGLELFQKKVTIGGKQGGKQLPQSGFSPSAY 176 (267)
T ss_pred cccCCCCCcccccccc-CCc-cCcc--chhhhhhhcCcHHhhhhcccCcCCCCcccccccCCCcCCcccCCcccc
Confidence 8889999999988774 332 2234 77776665555566554433 35556655555544443
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.4e-08 Score=99.52 Aligned_cols=175 Identities=12% Similarity=0.044 Sum_probs=109.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
..+|+|-|||..+++++|..+|+.||.|..|... -...|.+||+|.++-+|+.|+++|++..|.|+.|+......
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 4689999999999999999999999999987654 34578999999999999999999999999999998221111
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc
Q 009944 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~ 453 (522)
. . ..+... ..-....... ...+ ++........+..|....+.. -+.-.|..
T Consensus 150 ~----~----~~~~~~--~~~~~~~~~p-~a~s-----~pgg~~~~~~~g~l~P~~s~~-------------~~~~~~~~ 200 (549)
T KOG4660|consen 150 R----A----MGLQSG--TSFLNHFGSP-LANS-----PPGGWPRGQLFGMLSPTRSSI-------------LLEHISSV 200 (549)
T ss_pred c----c----chhccc--chhhhhccch-hhcC-----CCCCCcCCcceeeeccchhhh-------------hhhcchhc
Confidence 0 0 000000 0000010000 1111 111112333333344333331 34555667
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
+|.+.. ...... ....|++|.+..++..+...+ |..+.|.....+|...
T Consensus 201 ~~~~~~-~~~~~~--------~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 201 DGSSPG-RETPLL--------NHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cCcccc-ccccch--------hhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 777765 221111 124589999999997777644 7788887777776544
No 136
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.3e-07 Score=87.21 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=69.2
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
.+.-.++-.|.++.+ +||..+|+.||+|.+|.|+++..+|.. .-+|||+|++.+++++|.-.|.+
T Consensus 239 eNVLFVCKLNPVTtD------------eDLeiIFSrFG~i~sceVIRD~ktgds---LqyaFiEFen~escE~AyFKMdN 303 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTD------------EDLEIIFSRFGKIVSCEVIRDRKTGDS---LQYAFIEFENKESCEQAYFKMDN 303 (479)
T ss_pred cceEEEEecCCcccc------------cchhhHHhhcccceeeeEEecccccch---hheeeeeecchhhHHHHHhhhcc
Confidence 445555566667766 399999999999999999999999876 78899999999999999999999
Q ss_pred CccCCeEEEEEEeC
Q 009944 498 RKFGGNTVNAFYYP 511 (522)
Q Consensus 498 ~~~~Gr~l~v~~~~ 511 (522)
..|..+.|+|.|..
T Consensus 304 vLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 304 VLIDDRRIHVDFSQ 317 (479)
T ss_pred eeeccceEEeehhh
Confidence 99999999999854
No 137
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.1e-07 Score=89.44 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=106.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CCCcce---EEEEEEcChHHHHHHHHHHcCCccCCe
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKG---YGFCVYQDPAVTDIACAALNGLKMGDK 364 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~---~g~~~g---~afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (522)
..-.++|||++||.+++|+.|...|..||.+. |.++...+ --.++| |+|+.|+++......|.+..- .-.+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~ 333 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNY 333 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccce
Confidence 34457899999999999999999999999974 44442111 112456 999999999988877765532 11222
Q ss_pred EEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccC------CCCcCCCCCCcceEEEeeCCCCcCcCCChH
Q 009944 365 TLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL------GGGMSLFGETLAKVLCLTEAITADALADDE 438 (522)
Q Consensus 365 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 438 (522)
-+.|.-.+.+... -+.-+|... ....+.....+++|..|+-.++.+
T Consensus 334 yf~vss~~~k~k~----------------------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~------ 385 (520)
T KOG0129|consen 334 YFKVSSPTIKDKE----------------------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAE------ 385 (520)
T ss_pred EEEEecCcccccc----------------------eeEEeeEeccchhhhccCcccCccceEEecCCCCcchHH------
Confidence 2333322221110 000011100 012333334566666677777776
Q ss_pred HHHHHHHHHHHHhh-ccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHH
Q 009944 439 EYEEILEDMREECG-KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA 494 (522)
Q Consensus 439 ~~~~~~~~l~~~f~-~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ 494 (522)
+|..+|+ .||.|..|-|-.|+.-.-| +|-+-|+|.+...=.+||.+
T Consensus 386 -------eLA~imd~lyGgV~yaGIDtD~k~KYP---kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 386 -------ELAMIMEDLFGGVLYVGIDTDPKLKYP---KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred -------HHHHHHHHhcCceEEEEeccCcccCCC---CCcceeeecccHHHHHHHhh
Confidence 8999998 8999999999998755444 45559999999999999885
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.56 E-value=6.4e-08 Score=85.37 Aligned_cols=164 Identities=14% Similarity=0.152 Sum_probs=113.7
Q ss_pred EEEcCCCCCCCHHH---HHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 297 VFVGGLPYYFTETQ---IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 297 l~v~nLp~~~t~~~---l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
+++.++-..+..+- +...|+.|-.+...+++.+. -+.-.+++|+.|.....-.++-..-++.+++-.+|++.-.+.
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 44555544443332 35677777666666777764 466788999999988777777666667777777666654432
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc
Q 009944 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~ 453 (522)
-..-... .-...+.-++|--|.|.++.+ -|...|.+
T Consensus 178 wedPsl~-------------------------------ew~~~DfRIfcgdlgNevnd~-------------vl~raf~K 213 (290)
T KOG0226|consen 178 WEDPSLA-------------------------------EWDEDDFRIFCGDLGNEVNDD-------------VLARAFKK 213 (290)
T ss_pred cCCcccc-------------------------------cCccccceeecccccccccHH-------------HHHHHHHh
Confidence 1100000 000111334444566666665 78999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEE
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~ 508 (522)
|-.....++.++.-+|+. +|+.||.|.++.++..|+..|+|.+++.+.|++.
T Consensus 214 fpsf~~akviRdkRTgKS---kgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 214 FPSFQKAKVIRDKRTGKS---KGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccchhhcccccccccccc---ccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 999999999999999875 4555999999999999999999999999999864
No 139
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.56 E-value=4.8e-08 Score=91.96 Aligned_cols=177 Identities=18% Similarity=0.127 Sum_probs=132.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
...++|++++...+.+.++..++..+|.+....+........++|+++|.|...+.+..||.......+.++.+.....+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 34689999999999999999999999987777776666688899999999999999999998554456666666666554
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCC-CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 373 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGE-TLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
......... ......... ....+.+++...+.+ +|+.+|
T Consensus 167 ~~~~~~~n~---------------------------~~~~~~~~s~~~~~~~~~~f~~~~d-------------~~~~~~ 206 (285)
T KOG4210|consen 167 RRGLRPKNK---------------------------LSRLSSGPSDTIFFVGELDFSLTRD-------------DLKEHF 206 (285)
T ss_pred cccccccch---------------------------hcccccCccccceeecccccccchH-------------HHhhhc
Confidence 322110000 000011111 222244455444443 888999
Q ss_pred hccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 452 ~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
..+|.|..+.++.+..++.. .|+|||.|.+...+..|+.. +...++|+++.+.+-+..
T Consensus 207 ~~~~~i~~~r~~~~~~s~~~---kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 207 VSSGEITSVRLPTDEESGDS---KGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cCcCcceeeccCCCCCccch---hhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 99999999999999988876 67889999999999999998 999999999999887654
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.52 E-value=9.9e-07 Score=68.03 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHh--cCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC----CeEEEE
Q 009944 295 DRVFVGGLPYYFTETQIKELLES--FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG----DKTLTV 368 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~--~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~----g~~l~v 368 (522)
+||.|+|||...|.++|.+++.. .|....+-++.|-.++.+.|||||-|.+++.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999884 355677888999889999999999999999999999999998774 678899
Q ss_pred EEccC
Q 009944 369 RRATA 373 (522)
Q Consensus 369 ~~~~~ 373 (522)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 98854
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.52 E-value=1.2e-07 Score=88.64 Aligned_cols=179 Identities=16% Similarity=0.061 Sum_probs=120.4
Q ss_pred eeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEEEec
Q 009944 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255 (522)
Q Consensus 176 ~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~v~~ 255 (522)
-|.|.||.+.+|.++++.+|..+|.|..+.++.. +.++.+......|||.|.+...+..|..|..++|-++.|.|..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~---~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPN---VDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCC---CCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 6899999999999999999999999876655443 3344455556789999999999999998888888888877753
Q ss_pred CC-CCCccc--cccCCCCCCC-----CCcc--------------ccc---ccCCCCC--CCCCCCCCeEEEcCCCCCCCH
Q 009944 256 PT-DYNPTL--AAALGPGQPS-----PNLN--------------LAA---VGLASGA--IGGAEGPDRVFVGGLPYYFTE 308 (522)
Q Consensus 256 ~~-~~~~~~--~~~~~~~~~~-----~~~~--------------~~~---~~~~~~~--~~~~~~~~~l~v~nLp~~~t~ 308 (522)
.. ...+.. ...+++.... +... .+. ..+.+.. ....+...+|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 22 111111 0011100000 0000 000 0000000 000112267999999999999
Q ss_pred HHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC
Q 009944 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (522)
Q Consensus 309 ~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (522)
.++.+.|..+|.|....+.- |...-+|-|+|........|+. ++|..+.
T Consensus 166 ~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999999998776643 3345578899999988888887 6777776
No 142
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.45 E-value=1e-07 Score=84.69 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHhh-ccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 437 DEEYEEILEDMREECG-KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 437 ~~~~~~~~~~l~~~f~-~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
...+++..++|..+|+ +||+|+++.|..+-.... +|-+||.|...++|++|++.|||..|+|++|.+.|.+...|
T Consensus 75 q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl----~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 75 QRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHL----VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhh----hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 4457777889999998 999999998877654444 47889999999999999999999999999999999998776
Q ss_pred cc
Q 009944 516 FN 517 (522)
Q Consensus 516 ~~ 517 (522)
..
T Consensus 151 re 152 (260)
T KOG2202|consen 151 RE 152 (260)
T ss_pred hh
Confidence 53
No 143
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.45 E-value=5.7e-07 Score=87.94 Aligned_cols=83 Identities=22% Similarity=0.389 Sum_probs=71.3
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||.+|...+-..+|+++|++||.+++.. +|....+...+.|+||++.+.++|.+|| .|+...|.|+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAK------VVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAK------VVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceecee------eeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 44568899999999999999999999999987633 3555566667889999999999999999 6999999999
Q ss_pred eEEEecCCCC
Q 009944 250 AVRVRRPTDY 259 (522)
Q Consensus 250 ~~~v~~~~~~ 259 (522)
.|.|..+++.
T Consensus 476 mISVEkaKNE 485 (940)
T KOG4661|consen 476 MISVEKAKNE 485 (940)
T ss_pred eeeeeecccC
Confidence 9999877654
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.42 E-value=3.3e-07 Score=83.39 Aligned_cols=80 Identities=23% Similarity=0.411 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
....+||+|+.+.+|.++|...|+.||.|..|.++.+...|.++|||||+|.+.+.++.|+. |+|..|.|..+.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 44689999999999999999999999999999999999899999999999999999999999 99999999999999864
Q ss_pred C
Q 009944 373 A 373 (522)
Q Consensus 373 ~ 373 (522)
-
T Consensus 179 ~ 179 (231)
T KOG4209|consen 179 T 179 (231)
T ss_pred e
Confidence 3
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.37 E-value=1.4e-06 Score=87.63 Aligned_cols=84 Identities=18% Similarity=0.304 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
....++|||+||++.++++.|...|..||+|..|+|+.... ....+-||||-|.+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34456799999999999999999999999999999887542 334567999999999999999999999999999999
Q ss_pred EEEccCC
Q 009944 368 VRRATAS 374 (522)
Q Consensus 368 v~~~~~~ 374 (522)
+.|+...
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.30 E-value=1.4e-06 Score=85.64 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=65.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
..+|||+|||.++++.+|.++|..||.|+...|..-...+...+||||+|.+.++++.||.+- -..++++.|.|.--..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 345999999999999999999999999998776554323444489999999999999999854 6889999999986443
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.24 E-value=2.2e-07 Score=87.62 Aligned_cols=155 Identities=19% Similarity=0.291 Sum_probs=111.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcC-CccCCeEEEEEEcc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-LKMGDKTLTVRRAT 372 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g-~~~~g~~l~v~~~~ 372 (522)
+.||++||.+.++..+|..+|...-. ...-.++ ..||+||.+.+...|.+|++.++| ..+.|..+.|.+.-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 36899999999999999999985421 1111122 248999999999999999999999 56899999998874
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhh
Q 009944 373 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 452 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~ 452 (522)
++...... . .|.+... ---|+-|-.+..
T Consensus 75 ~kkqrsrk---------------~---------------------------Qirnipp----------ql~wevld~Ll~ 102 (584)
T KOG2193|consen 75 PKKQRSRK---------------I---------------------------QIRNIPP----------QLQWEVLDSLLA 102 (584)
T ss_pred hHHHHhhh---------------h---------------------------hHhcCCH----------HHHHHHHHHHHh
Confidence 42111000 0 0111100 011246778889
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 453 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 453 ~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
.||+|+.|........ ....-|+|.+.+.+..||..|||..+++..+++.|.+...
T Consensus 103 qyg~ve~~eqvnt~~e------tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 103 QYGTVENCEQVNTDSE------TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred ccCCHhHhhhhccchH------HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 9999999865432211 1344789999999999999999999999999999998654
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.21 E-value=8.5e-08 Score=90.35 Aligned_cols=151 Identities=19% Similarity=0.325 Sum_probs=117.4
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcC-ceecCceEE
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG-IIFEGVAVR 252 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~-~~~~g~~~~ 252 (522)
.++|++||.+.++..+|..+|...- + -..-.+--..||+||.+.+...|.+|+ .++| ..+.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak-~-----------~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK-I-----------PGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc-C-----------CCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 4699999999999999999998751 1 111112224689999999999999999 4776 458899998
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEee-CCC
Q 009944 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK-DRD 331 (522)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~-~~~ 331 (522)
|...-... ...+.+-|.|+|+...++.|..++..||.+..|..+. +.+
T Consensus 70 ~~~sv~kk-------------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e 118 (584)
T KOG2193|consen 70 VEHSVPKK-------------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE 118 (584)
T ss_pred ccchhhHH-------------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH
Confidence 87532221 1124688999999999999999999999999886543 322
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 332 ~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
+ -..-|+|.+.+.+..||..|+|..|....++|.|..
T Consensus 119 t----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 119 T----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred H----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 2 223478999999999999999999999999999974
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.19 E-value=2.8e-06 Score=79.67 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=119.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
..|-|.||.+.+|.++++.+|...|.|..+.|+.... -......|||.|.+...+..|- .|.++.|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 3799999999999999999999999999998876432 1233568999999999999885 47778888888888765
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCC------CCCcceEEEeeCCCCc------Cc-----C
Q 009944 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLF------GETLAKVLCLTEAITA------DA-----L 434 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~v~~l~~~~~~------~~-----l 434 (522)
-.. ..+... .+.. ...+... ...-.+++.++.. ...++.++.-+.+... ++ .
T Consensus 87 ~~~---~~p~r~-af~~----l~~~nav---prll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~ 155 (479)
T KOG4676|consen 87 GDE---VIPDRF-AFVE----LADQNAV---PRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTRE 155 (479)
T ss_pred CCC---CCccHH-HHHh----cCccccc---ccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhh
Confidence 331 222221 1110 0111100 0011111211111 1112222221111110 00 1
Q ss_pred CChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 435 ADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 435 ~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
+.+..-.++..++.+.|..+|.|....+.-... .-+|-|+|........|+. ++|+.|.-....+..+.
T Consensus 156 v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~-------s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 156 VQSLISAAILPESGESFERKGEVSYAHTASKSR-------SSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIK 224 (479)
T ss_pred hhcchhhhcchhhhhhhhhcchhhhhhhhccCC-------CcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcC
Confidence 113344556789999999999999887754331 1345699999998899988 58888775544444433
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.13 E-value=9.1e-06 Score=79.95 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=63.5
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe--cCCCcEEEEEEeCHHHHHHHHHhcCceecCc
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 249 (522)
....+|||.|||.++++.+|.++|..||.|+.. -+.+.. +....||||+|.+.++++.|+.-+...++++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~--------~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~ 357 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEG--------GIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGR 357 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhccccccc--------ceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCe
Confidence 344569999999999999999999999998532 223332 3344899999999999999998889999999
Q ss_pred eEEEecCC
Q 009944 250 AVRVRRPT 257 (522)
Q Consensus 250 ~~~v~~~~ 257 (522)
+|.|+.-.
T Consensus 358 kl~Veek~ 365 (419)
T KOG0116|consen 358 KLNVEEKR 365 (419)
T ss_pred eEEEEecc
Confidence 99997533
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.12 E-value=1.4e-05 Score=58.43 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=47.6
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHHhcCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEE
Q 009944 295 DRVFVGGLPYYFTETQ----IKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~----l~~~F~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (522)
..|+|.|||.+.+... |+.++..+|. |..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3699999999988764 5666667875 65541 2469999999999999999999999999999999
Q ss_pred EccC
Q 009944 370 RATA 373 (522)
Q Consensus 370 ~~~~ 373 (522)
|...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9744
No 152
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.09 E-value=1.2e-05 Score=62.14 Aligned_cols=79 Identities=11% Similarity=0.165 Sum_probs=58.8
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceec----Cc
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE----GV 249 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~----g~ 249 (522)
++|+|.|||...|.++|.+++..... +.. .-.-..+|.....+.|||||.|.+++.|.... .++|..+. .+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~--g~y--DF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK--GKY--DFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc--Ccc--eEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCc
Confidence 58999999999999999999987621 110 00111334445667899999999999999999 69998886 35
Q ss_pred eEEEecCC
Q 009944 250 AVRVRRPT 257 (522)
Q Consensus 250 ~~~v~~~~ 257 (522)
.+.|.++.
T Consensus 78 vc~i~yAr 85 (97)
T PF04059_consen 78 VCEISYAR 85 (97)
T ss_pred EEEEehhH
Confidence 67777654
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=4.6e-05 Score=55.77 Aligned_cols=62 Identities=18% Similarity=0.342 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhccC-CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 439 EYEEILEDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 439 ~~~~~~~~l~~~f~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
....+...|++++.-+| +|..|.= +.|+|.|.+++.|.+|++-|+|..+-|++|.|+|.+..
T Consensus 15 d~~~I~~RL~qLsdNCGGkVl~v~~-------------~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 15 DPSSIKNRLRQLSDNCGGKVLSVSG-------------GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp -HHHHHHHHHHHHHTTT--EEE--T-------------T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred CHHHHHHHHHHHhhccCCEEEEEeC-------------CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 35677789999998766 6776621 68899999999999999999999999999999998754
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.04 E-value=5.3e-06 Score=77.57 Aligned_cols=83 Identities=23% Similarity=0.389 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCe
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (522)
...+|||.+||..+++.+|.++|.++|.|. .|.|.++++|++.+|-|.|.|.+...|+.|+.-+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 346899999999999999999999999885 478888999999999999999999999999999999999999
Q ss_pred EEEEEEccCCC
Q 009944 365 TLTVRRATASS 375 (522)
Q Consensus 365 ~l~v~~~~~~~ 375 (522)
+|+|.+|....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999987643
No 155
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.02 E-value=1.3e-05 Score=80.98 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=65.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---------cCCCcEEEEEEeCHHHHHHHH-H
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---------NHEKKFAFVEMRTVEEASNAM-A 240 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~---------~~~~g~afV~f~~~~~a~~a~-~ 240 (522)
....+.|||+||++.++++.|...|..||+|. .+.+ ...+.||||-|.+..+|++|+ .
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPla------------svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~ 238 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLA------------SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE 238 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCccc------------ceeeecccchhhhccccccceeeehhhhhHHHHHHH
Confidence 44567899999999999999999999999853 3332 123679999999999999999 7
Q ss_pred hcCceecCceEEEecCCCC
Q 009944 241 LDGIIFEGVAVRVRRPTDY 259 (522)
Q Consensus 241 ~~~~~~~g~~~~v~~~~~~ 259 (522)
|+|+.+.+..+++.|.+.-
T Consensus 239 lqg~iv~~~e~K~gWgk~V 257 (877)
T KOG0151|consen 239 LQGIIVMEYEMKLGWGKAV 257 (877)
T ss_pred hcceeeeeeeeeecccccc
Confidence 9999999999999997643
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.01 E-value=2e-05 Score=72.56 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=62.8
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
.-..|++|+..+..++...-+ .--++|.+||+|..|.|.+.........+..-+||+|.+.+||.+||.+++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vL-------k~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg 187 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVL-------KRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG 187 (480)
T ss_pred ceeEEecCCCCCCcccccccc-------cchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc
Confidence 345566666665555422211 3368999999999999977653322222212269999999999999999999
Q ss_pred CccCCeEEEEEEeC
Q 009944 498 RKFGGNTVNAFYYP 511 (522)
Q Consensus 498 ~~~~Gr~l~v~~~~ 511 (522)
..++|+.|+++|-+
T Consensus 188 s~~DGr~lkatYGT 201 (480)
T COG5175 188 SLLDGRVLKATYGT 201 (480)
T ss_pred ccccCceEeeecCc
Confidence 99999999999865
No 157
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=97.97 E-value=3.8e-05 Score=63.91 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.2
Q ss_pred CCCCCCCCCccCCCCC
Q 009944 111 RSGFDMAPPAAAMLPG 126 (522)
Q Consensus 111 ~~~~d~~~~~~~~~~~ 126 (522)
...|++++++|+.+.+
T Consensus 116 ~~yv~VPp~gf~~~y~ 131 (182)
T PF06495_consen 116 TKYVDVPPPGFEYAYG 131 (182)
T ss_pred eeeccCCCcccccccC
Confidence 3479999999876654
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.88 E-value=2.4e-05 Score=62.00 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=45.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcC-----CccCCeEEEEEE
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-----LKMGDKTLTVRR 370 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g-----~~~~g~~l~v~~ 370 (522)
.|+|.|++..++.++|++.|+.||.|.+|.+.... ..|||.|.+.+.|++|+..+.- ..+.+..+++..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 68899999999999999999999999999987653 2699999999999999988753 466777666664
Q ss_pred c
Q 009944 371 A 371 (522)
Q Consensus 371 ~ 371 (522)
-
T Consensus 77 L 77 (105)
T PF08777_consen 77 L 77 (105)
T ss_dssp -
T ss_pred C
Confidence 3
No 159
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.86 E-value=5.2e-05 Score=68.88 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=57.9
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
.||+++|+.||.+..+-+-.+. .|.+ .|+|-|.|...+||..||+.+||..+.|+.+++..+.....
T Consensus 98 ~Dl~eLF~~~~~~~r~~vhy~~-~G~s---~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 98 ADLKELFAEFGELKRVAVHYDR-AGRS---LGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred HHHHHHHHHhccceEEeeccCC-CCCC---CccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCccc
Confidence 4999999999988888887766 5554 68899999999999999999999999999999988765443
No 160
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.71 E-value=7.9e-05 Score=67.97 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=59.7
Q ss_pred HHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccccc
Q 009944 446 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 517 (522)
Q Consensus 446 ~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~~~ 517 (522)
+|..+|+.+|.|..+.|+.+...+.+ +|+|||+|.+.+.+++|+. |+|..|.|+.+.|++.--.....
T Consensus 117 ~~e~hf~~Cg~i~~~ti~~d~~~~~~---k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~~pg~ 184 (231)
T KOG4209|consen 117 KIELHFESCGGINRVTVPKDKFRGHP---KGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTNVPGM 184 (231)
T ss_pred hhhheeeccCCccceeeeccccCCCc---ceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeeecCCc
Confidence 79999999999999999999877664 7899999999999999999 99999999999999865444333
No 161
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.63 E-value=0.00014 Score=65.83 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=58.0
Q ss_pred EEEcCC--CCCCCH---HHHHHHHHhcCCceEEEEeeCCCCCCc-ceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 297 VFVGGL--PYYFTE---TQIKELLESFGTLHGFDLVKDRDTGNS-KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 297 l~v~nL--p~~~t~---~~l~~~F~~~G~i~~v~~~~~~~~g~~-~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
|++.|+ +-.+++ +++.+.|++||.|..|.|.-.+..-.. .--.||+|...++|.+|+-.|||.+|+|+.+...|
T Consensus 284 lllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 284 LLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 555555 233443 578999999999998877765421111 12379999999999999999999999999999998
Q ss_pred cc
Q 009944 371 AT 372 (522)
Q Consensus 371 ~~ 372 (522)
.+
T Consensus 364 yn 365 (378)
T KOG1996|consen 364 YN 365 (378)
T ss_pred cc
Confidence 64
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00043 Score=68.51 Aligned_cols=84 Identities=20% Similarity=0.351 Sum_probs=65.9
Q ss_pred ceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCc
Q 009944 420 AKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK 499 (522)
Q Consensus 420 ~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~ 499 (522)
-.|+++.+..-.. ..-...+..-|..+|+++|+|.++.++.++.+|+ +|++|++|++..+|+.|++.|||+.
T Consensus 58 D~vVvv~g~PvV~----~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt----kG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 58 DSVVVVDGAPVVG----PARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT----KGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred ceEEEECCCcccC----hhHHHHHHHHHHHHHHhhccccceeeccCccCCe----eeEEEEEecChhhHHHHHHhcccce
Confidence 3455555543222 2235556678899999999999999999987775 6999999999999999999999999
Q ss_pred cC-CeEEEEEEeC
Q 009944 500 FG-GNTVNAFYYP 511 (522)
Q Consensus 500 ~~-Gr~l~v~~~~ 511 (522)
|. +++..|...+
T Consensus 130 ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 130 LDKNHTFFVRLFK 142 (698)
T ss_pred ecccceEEeehhh
Confidence 96 6777776654
No 163
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.53 E-value=0.00096 Score=55.14 Aligned_cols=61 Identities=18% Similarity=0.394 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 441 EEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 441 ~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
+.+..+|.+.|..||+|.-|++.- +..+|+|.+-+.|.+|+. |+|..++|+.|+|.+-+.+
T Consensus 47 d~l~~~ll~~~~~~GevvLvRfv~-----------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 47 DNLMDELLQKFAQYGEVVLVRFVG-----------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHHHHHCCS-ECEEEEET-----------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHHHHHhCCceEEEEEeC-----------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 345678999999999999888764 456999999999999998 8999999999999987764
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.51 E-value=0.00023 Score=65.73 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=63.7
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHHhcCCceEEEEeeCCCCCCc-ceE--EEEEEcChHHHHHHHHHHcCCccCCe
Q 009944 294 PDRVFVGGLPYYFTETQI------KELLESFGTLHGFDLVKDRDTGNS-KGY--GFCVYQDPAVTDIACAALNGLKMGDK 364 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l------~~~F~~~G~i~~v~~~~~~~~g~~-~g~--afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (522)
.+-+||-+||+.+..+++ .++|.+||.|..|.+-+.-.+..+ .+. .||.|.+.++|..||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356899999998877662 578999999988776543211111 222 39999999999999999999999999
Q ss_pred EEEEEEccCC
Q 009944 365 TLTVRRATAS 374 (522)
Q Consensus 365 ~l~v~~~~~~ 374 (522)
.|+..|.+.+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999997755
No 165
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.51 E-value=7.3e-05 Score=69.21 Aligned_cols=78 Identities=24% Similarity=0.386 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCC--ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGT--LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~--i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
.++||+||-+.+|++||.+.+...|. +.++++..+..+|+++|||+|...+.....+.|+.|-.++|.|..-.|...+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 47999999999999999999997775 7788888898999999999999999999999999999999988776666553
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00041 Score=68.62 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=62.2
Q ss_pred CeEEEcCCCCCCC------HHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc-CCeEEE
Q 009944 295 DRVFVGGLPYYFT------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM-GDKTLT 367 (522)
Q Consensus 295 ~~l~v~nLp~~~t------~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~-~g~~l~ 367 (522)
.+|+|.|+|.--. ..-|..+|+++|+|..+.++.+.++| .+||.|++|.+..+|+.|++.|||..| ...++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 5799999986432 23577899999999999999886555 899999999999999999999999887 456677
Q ss_pred EEE
Q 009944 368 VRR 370 (522)
Q Consensus 368 v~~ 370 (522)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 764
No 167
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.39 E-value=0.00048 Score=54.64 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=38.3
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCC-----ccCCeEEEEEEeC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR-----KFGGNTVNAFYYP 511 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~-----~~~Gr~l~v~~~~ 511 (522)
++|++.|+.||.|..|.+... --.|||.|.+++.|+.|+..+.-. .+.+..+.+....
T Consensus 16 e~iK~~f~~~g~V~yVD~~~G---------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 16 EDIKEAFSQFGEVAYVDFSRG---------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp HHHHHHT-SS--EEEEE--TT----------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred HHHHHHHHhcCCcceEEecCC---------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 599999999999999999653 346799999999999999988654 6778888777665
No 168
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=97.38 E-value=5.7e-05 Score=69.36 Aligned_cols=11 Identities=45% Similarity=0.613 Sum_probs=4.4
Q ss_pred CCCCcccccCC
Q 009944 87 HSSDRFRNRSK 97 (522)
Q Consensus 87 rsr~r~~~r~r 97 (522)
||++|+++++|
T Consensus 379 RsrSRSR~~sR 389 (453)
T KOG2888|consen 379 RSRSRSRSRSR 389 (453)
T ss_pred hhhhhhccccc
Confidence 44444443333
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.34 E-value=0.00057 Score=46.61 Aligned_cols=52 Identities=19% Similarity=0.527 Sum_probs=43.5
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~ 239 (522)
+.|-|.|.++...+. +..+|..||. |.++.......++||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGe------------I~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGE------------IVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCC------------EEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 468899998777654 5568889998 677777778899999999999999986
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.31 E-value=0.00012 Score=65.41 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=52.9
Q ss_pred HHHHHHHH-hcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 309 TQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 309 ~~l~~~F~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
++|...|+ +||.|+.+.+..+. .-.-.|-+||.|...++|++|++.|||.+|.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 56777777 99999988766542 22346889999999999999999999999999999999864
No 171
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.26 E-value=0.00075 Score=46.04 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHH
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al 353 (522)
+.|-|.|.++...+ .|...|..||.|..+.+... .-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 46889999877664 46669999999999887622 347999999999999985
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.17 E-value=0.001 Score=59.58 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=80.3
Q ss_pred HHHHH-HhcCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 009944 235 ASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313 (522)
Q Consensus 235 a~~a~-~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~ 313 (522)
|..|. +|++....|+.+.|.++-. ..|+|.||...+..+.|.+
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------a~l~V~nl~~~~sndll~~ 50 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH------------------------------------AELYVVNLMQGASNDLLEQ 50 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc------------------------------------ceEEEEecchhhhhHHHHH
Confidence 45555 6899999999999997422 3699999999999999999
Q ss_pred HHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcC----CccCCeEEEEEEc
Q 009944 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG----LKMGDKTLTVRRA 371 (522)
Q Consensus 314 ~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g----~~~~g~~l~v~~~ 371 (522)
.|+.||+|....++.| ..++..+-++|+|...-.|.+|+..+.- .+..+.++.|...
T Consensus 51 ~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 51 AFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred hhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 9999999987766666 3688889999999999999999988742 2345566666543
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.15 E-value=0.0003 Score=62.80 Aligned_cols=71 Identities=21% Similarity=0.450 Sum_probs=60.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC--------CCcc----eEEEEEEcChHHHHHHHHHHcCCccC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT--------GNSK----GYGFCVYQDPAVTDIACAALNGLKMG 362 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~--------g~~~----g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (522)
-.||+++||+......|+++|+.||.|-.|.|.....+ |.+. --|.|+|.+...|..+...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 47999999999999999999999999999988776544 2222 23789999999999999999999999
Q ss_pred CeE
Q 009944 363 DKT 365 (522)
Q Consensus 363 g~~ 365 (522)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 865
No 174
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.13 E-value=0.00054 Score=64.46 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=70.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCC--CCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA--GPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~--~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
.....+|||.+||..+++++|.++|.++|.|..-.-. ..+.+-.+..+...++-|.|.|.+...|+.|+ -+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 4456689999999999999999999999988643322 11233444566778999999999999999999 59999999
Q ss_pred CceEEEecCCC
Q 009944 248 GVAVRVRRPTD 258 (522)
Q Consensus 248 g~~~~v~~~~~ 258 (522)
+.+|+|..+..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99999865443
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.03 E-value=0.0031 Score=49.19 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=51.1
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEE------------EecCCCcEEEEEEeCHHHHHHHHH
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV------------YINHEKKFAFVEMRTVEEASNAMA 240 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~------------~~~~~~g~afV~f~~~~~a~~a~~ 240 (522)
....|.|-|.|+. ....|.+.|++||.| +... ..........|+|.++.+|.+||.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I-----------le~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~ 72 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTI-----------LEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ 72 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-E-----------ECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceE-----------EEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH
Confidence 3457999999988 455688899999985 3332 344566789999999999999999
Q ss_pred hcCceecCceE-EEec
Q 009944 241 LDGIIFEGVAV-RVRR 255 (522)
Q Consensus 241 ~~~~~~~g~~~-~v~~ 255 (522)
.||..|.|.-| -|.+
T Consensus 73 ~NG~i~~g~~mvGV~~ 88 (100)
T PF05172_consen 73 KNGTIFSGSLMVGVKP 88 (100)
T ss_dssp TTTEEETTCEEEEEEE
T ss_pred hCCeEEcCcEEEEEEE
Confidence 99999998654 4554
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.96 E-value=0.002 Score=50.18 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=44.7
Q ss_pred HHHHHHhhccCCeEEEE-ecCCCCCC---CCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEE-EEEe
Q 009944 445 EDMREECGKYGTLVNVV-IPRPDQNG---GETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVN-AFYY 510 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~-i~~~~~~g---~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~-v~~~ 510 (522)
..|.++|+.||.|.+.. +.++...- ....|.....|+|+++.+|.+||.. ||..|+|..+. |.+.
T Consensus 20 ~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 20 NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGVKPC 89 (100)
T ss_dssp HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEEEE-
T ss_pred HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEEEEc
Confidence 48999999999998875 22211000 0012346899999999999999995 99999987655 6665
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.75 E-value=0.0029 Score=56.68 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeC
Q 009944 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE 427 (522)
Q Consensus 348 ~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~ 427 (522)
-|..|-..|++....|+.+.|.|+.. ...+|++|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~--------------------------------------------a~l~V~nl~~ 41 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH--------------------------------------------AELYVVNLMQ 41 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc--------------------------------------------ceEEEEecch
Confidence 45666677999999999999999954 4567777777
Q ss_pred CCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCcc
Q 009944 428 AITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF 500 (522)
Q Consensus 428 ~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~ 500 (522)
.++.+ .+.+.|+.||.|+..++..|. .+.+ .|-.+|+|...-.|.+|+...+-.-|
T Consensus 42 ~~snd-------------ll~~~f~~fg~~e~av~~vD~-r~k~---t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 42 GASND-------------LLEQAFRRFGPIERAVAKVDD-RGKP---TREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred hhhhH-------------HHHHhhhhcCccchheeeecc-cccc---cccchhhhhcchhHHHHHHHhccCcc
Confidence 76665 789999999999997776665 3332 35559999999999999998854444
No 178
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=96.70 E-value=0.0032 Score=61.88 Aligned_cols=19 Identities=16% Similarity=-0.076 Sum_probs=9.5
Q ss_pred eCCCccCcHHHHHHHHHHH
Q 009944 180 GGLPPLANEQAIATFFSQV 198 (522)
Q Consensus 180 ~nlp~~~t~~~l~~~f~~~ 198 (522)
||--+.+|..+....|-++
T Consensus 555 G~~r~klt~~~~lk~rmq~ 573 (653)
T KOG2548|consen 555 GNSRPKLTFFECLKSRMQF 573 (653)
T ss_pred CCCCCcccHHHHHHHHHHH
Confidence 4555566655544444333
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.66 E-value=0.0093 Score=43.92 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=40.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHc
Q 009944 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (522)
Q Consensus 297 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 357 (522)
||--.+|..+...||.++|+.||.|. |.++.+- -|||.+.+.+.|..|+..+.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 44444999999999999999999984 5566542 59999999999999999885
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.65 E-value=0.0018 Score=62.11 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=55.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeC---CCCC--C--------cceEEEEEEcChHHHHHHHHHHcC
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD---RDTG--N--------SKGYGFCVYQDPAVTDIACAALNG 358 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~---~~~g--~--------~~g~afV~f~~~~~A~~Al~~l~g 358 (522)
+.++|.+-|||.+-..+.|.++|..+|.|..|+|... ++++ . .+-+|||+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 4579999999999999999999999999999999876 3322 1 145799999999999999998854
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.58 E-value=0.0099 Score=49.27 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 309 ~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.+|.+.|..||.+.-|+++.+ .-+|+|.+-+.|.+|+. ++|.+++|+.|+|..-++
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 378888999999888887754 37999999999999988 999999999999998765
No 182
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.50 E-value=0.025 Score=55.32 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=62.9
Q ss_pred hcccceeEEeCCCccC-cHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLA-NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~-t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 249 (522)
....+.|-+.-.|+.+ |-++|...|.+||. |.++.+..+.-.|.|+|.+..+|-.|....+..|+++
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~------------i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnnr 436 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGE------------IENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNNR 436 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCc------------cccccccCchhhheeeeeccccccchhccccceecCc
Confidence 3445667777777775 77899999999998 5666666667789999999999988888999999999
Q ss_pred eEEEecCCC
Q 009944 250 AVRVRRPTD 258 (522)
Q Consensus 250 ~~~v~~~~~ 258 (522)
.|+|.|.+.
T Consensus 437 ~iKl~whnp 445 (526)
T KOG2135|consen 437 FIKLFWHNP 445 (526)
T ss_pred eeEEEEecC
Confidence 999999654
No 183
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.41 E-value=0.0046 Score=59.45 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=52.3
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCC---CCCCCCCC-------CccEEEEEecChHh
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRP---DQNGGETP-------GVGKVFLEYYDAVG 487 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~---~~~g~~~~-------g~G~afV~F~~~~~ 487 (522)
.++++++..|+...- .| +.|.++|+.+|.|..|.|.+. +.+..... .+-||+|+|+..+.
T Consensus 229 l~srtivaenLP~Dh------~~----enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~ 298 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDH------SY----ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEA 298 (484)
T ss_pred cccceEEEecCCcch------HH----HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHH
Confidence 567777775553332 22 689999999999999999987 33322111 14579999999999
Q ss_pred HHHHHHHHhCCc
Q 009944 488 CATAKNALSGRK 499 (522)
Q Consensus 488 A~~Ai~~lng~~ 499 (522)
|.+|.+.||...
T Consensus 299 A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 299 ARKARELLNPEQ 310 (484)
T ss_pred HHHHHHhhchhh
Confidence 999999886443
No 184
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.36 E-value=0.0099 Score=52.21 Aligned_cols=62 Identities=15% Similarity=0.311 Sum_probs=47.9
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh--CCccCCeEEEEEEeCCcc
Q 009944 444 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS--GRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 444 ~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln--g~~~~Gr~l~v~~~~~~~ 514 (522)
.+.|.++|..|+.+..+.+++. ++-+.|.|.+.++|..|...|+ +..|.|..|+|.|+....
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s---------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS---------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT---------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred HHHHHHHHHhcCCceEEEEcCC---------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4689999999999988877653 5889999999999999999999 999999999999985443
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.35 E-value=0.024 Score=39.63 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=44.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc---CCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHH
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESF---GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~---G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 356 (522)
+..|+|.|++. .+.++|+.+|..| .....|.++-|. -|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35899999965 7778899999998 124467787763 3899999999999999764
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.29 E-value=0.0045 Score=61.93 Aligned_cols=76 Identities=25% Similarity=0.263 Sum_probs=61.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHH-hcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc---CCeEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTLT 367 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~~l~ 367 (522)
...+.|+|.||-.-.|.-+|+.++. ..|.|...+|-+ -+..|||.|.+.++|...+.+|||..+ +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 4457899999999999999999999 555666653321 134699999999999999999999776 678899
Q ss_pred EEEccC
Q 009944 368 VRRATA 373 (522)
Q Consensus 368 v~~~~~ 373 (522)
+.|...
T Consensus 516 adf~~~ 521 (718)
T KOG2416|consen 516 ADFVRA 521 (718)
T ss_pred eeecch
Confidence 998754
No 187
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.01 E-value=0.0074 Score=56.30 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=58.1
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHH-hcCceecCceE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAV 251 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~~ 251 (522)
..-++||+||-+.+|++||.+.+...|... +...+-+.....+.++|||+|...+....++.|+ |-...|.|+.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~----~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQ----FADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHH----HhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 345799999999999999999998877531 1111112223346789999999999999999995 77788998765
Q ss_pred EEe
Q 009944 252 RVR 254 (522)
Q Consensus 252 ~v~ 254 (522)
.|.
T Consensus 155 ~V~ 157 (498)
T KOG4849|consen 155 TVL 157 (498)
T ss_pred eee
Confidence 553
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.91 E-value=0.0068 Score=60.71 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=65.0
Q ss_pred CCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc-cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHH
Q 009944 416 GETLAKVLCLTEAITADALADDEEYEEILEDMREECGK-YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA 494 (522)
Q Consensus 416 ~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~-~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ 494 (522)
-...++|+.|.|++-+..| .+|+.++.. .|.|+...|-+- +..|||.|.+.++|...+.+
T Consensus 440 R~~~SnvlhI~nLvRPFTl----------gQLkelL~rtgg~Vee~WmDkI---------KShCyV~yss~eEA~atr~A 500 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTL----------GQLKELLGRTGGNVEEFWMDKI---------KSHCYVSYSSVEEAAATREA 500 (718)
T ss_pred CCCccceEeeecccccchH----------HHHHHHHhhccCchHHHHHHHh---------hcceeEecccHHHHHHHHHH
Confidence 3467889999998887744 589999984 556666644332 24689999999999999999
Q ss_pred HhCCcc---CCeEEEEEEeCCcccc
Q 009944 495 LSGRKF---GGNTVNAFYYPEDKYF 516 (522)
Q Consensus 495 lng~~~---~Gr~l~v~~~~~~~~~ 516 (522)
|||... +++.|.+.|+..+.+.
T Consensus 501 lhnV~WP~sNPK~L~adf~~~deld 525 (718)
T KOG2416|consen 501 LHNVQWPPSNPKHLIADFVRADELD 525 (718)
T ss_pred HhccccCCCCCceeEeeecchhHHH
Confidence 999986 7799999999887654
No 189
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=95.71 E-value=0.0015 Score=54.29 Aligned_cols=10 Identities=0% Similarity=0.039 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 009944 189 QAIATFFSQV 198 (522)
Q Consensus 189 ~~l~~~f~~~ 198 (522)
++..+++.-.
T Consensus 141 eEeiEMmk~M 150 (196)
T KOG3263|consen 141 EEEIEMMKIM 150 (196)
T ss_pred HHHHHHHHHh
Confidence 3334554444
No 190
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.69 E-value=0.0075 Score=54.11 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=57.2
Q ss_pred cceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCC---------CCCCCCccEEEEEecChHhHH
Q 009944 419 LAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQN---------GGETPGVGKVFLEYYDAVGCA 489 (522)
Q Consensus 419 ~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~---------g~~~~g~G~afV~F~~~~~A~ 489 (522)
.+=|+.|.++..-..- ..|+++|+.||.|-.|.+-..... |....-+--++|+|.+...|.
T Consensus 73 k~GVvylS~IPp~m~~----------~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK 142 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDP----------VRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAK 142 (278)
T ss_pred cceEEEeccCCCccCH----------HHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHH
Confidence 3446666666544322 289999999999999998776544 332222223599999999999
Q ss_pred HHHHHHhCCccCCeEE
Q 009944 490 TAKNALSGRKFGGNTV 505 (522)
Q Consensus 490 ~Ai~~lng~~~~Gr~l 505 (522)
.+...|||..|+|++=
T Consensus 143 ~iAe~Lnn~~Iggkk~ 158 (278)
T KOG3152|consen 143 RIAELLNNTPIGGKKK 158 (278)
T ss_pred HHHHHhCCCccCCCCC
Confidence 9999999999999863
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.64 E-value=0.037 Score=55.21 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=55.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHH--hcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcC--CccCCeEEEEEE
Q 009944 295 DRVFVGGLPYYFTETQIKELLE--SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVRR 370 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~--~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v~~ 370 (522)
+.|+|+.||..+-.++|+.+|+ .+-.+.+|.+..+. -=||+|++..||++|.+.|.. .+|.|++|....
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 4578999999999999999998 46778888776653 159999999999999998864 567787776553
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.46 E-value=0.0067 Score=56.95 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=51.1
Q ss_pred HHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 448 REECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 448 ~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
.+.|.+||.|.+|.+.++........+.--+||+|...++|..||...+|..+.|+.|+++|.+
T Consensus 98 ~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 98 TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGT 161 (327)
T ss_pred cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC
Confidence 5679999999999998876211111222337999999999999999999999999999888765
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.41 E-value=0.064 Score=43.79 Aligned_cols=55 Identities=13% Similarity=0.258 Sum_probs=45.1
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEe
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~ 510 (522)
..|....+.||.|.+|.+. |+-.|.|.|.+..+|-+|+.++.. ...|..+.++|-
T Consensus 105 ~sV~~~Ls~fGpI~SVT~c----------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLC----------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHHHhcCCcceeeec----------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3556667899999999883 235789999999999999999877 667888888874
No 194
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.32 E-value=0.0099 Score=59.98 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=5.2
Q ss_pred eEEeCCCccCcH
Q 009944 177 VYVGGLPPLANE 188 (522)
Q Consensus 177 v~v~nlp~~~t~ 188 (522)
-|+.|-|..++.
T Consensus 848 ~~~q~~~~qvs~ 859 (878)
T KOG1847|consen 848 PYLQNEPSQVSD 859 (878)
T ss_pred cccccchhhhHH
Confidence 344444444443
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.78 E-value=0.1 Score=42.62 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=53.9
Q ss_pred CeEEEcCCCCCC----CHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 295 DRVFVGGLPYYF----TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 295 ~~l~v~nLp~~~----t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
.+|.|+=|..++ +...|...++.||+|.+|.+.-. -.|.|.|.+..+|.+|+.+++. ...|..+.+.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 477776665543 33456667789999999977532 3599999999999999999975 66778888888
Q ss_pred ccC
Q 009944 371 ATA 373 (522)
Q Consensus 371 ~~~ 373 (522)
-..
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 643
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.62 E-value=0.42 Score=38.12 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=49.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (522)
.+.+...|..++-++|..+.+.+-. |..++|+++. ..++-.++++|.+.+.|..-...+||+.|..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4445555566666777766666554 7788888873 3356789999999999999999999988743
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.59 E-value=0.24 Score=36.64 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=41.4
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
....|+.|...-... ..||.++|++||.|.=--|- + .-|||...+.+.|..|+..++
T Consensus 7 ~RdHVFhltFPkeWK-----------~~DI~qlFspfG~I~VsWi~-d----------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLTFPKEWK-----------TSDIYQLFSPFGQIYVSWIN-D----------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE--TT-------------HHHHHHHCCCCCCEEEEEEC-T----------TEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEeCchHhh-----------hhhHHHHhccCCcEEEEEEc-C----------CcEEEEeecHHHHHHHHHHhc
Confidence 445677776443222 14999999999999855552 2 468999999999999999885
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.55 E-value=0.015 Score=54.58 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=63.4
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHHhcCCceEEEEeeCCC--CCC-cceEEEEEEcChHHHHHHHHHHcCCccCCeEEEE
Q 009944 295 DRVFVGGLPYYFTETQIK---ELLESFGTLHGFDLVKDRD--TGN-SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~~~~~~~--~g~-~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (522)
+-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+. ...-+||.|...++|..||...+|+.+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 357888999887666554 4788999999988877651 111 1123799999999999999999999999999998
Q ss_pred EEccCCC
Q 009944 369 RRATASS 375 (522)
Q Consensus 369 ~~~~~~~ 375 (522)
.+.+.+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8887663
No 199
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.22 E-value=2.5 Score=39.36 Aligned_cols=180 Identities=8% Similarity=0.103 Sum_probs=103.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCC-------CCCCcceEEEEEEcChHHHHHHH----HHHcC--Ccc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR-------DTGNSKGYGFCVYQDPAVTDIAC----AALNG--LKM 361 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~-------~~g~~~g~afV~f~~~~~A~~Al----~~l~g--~~~ 361 (522)
+.|...|+...++-..+...|-+||+|++|.++.+. +.......+.+-|-+.+.+..-. +.|+. ..+
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L 95 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKL 95 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 458899999999999999999999999999999864 12233457889999988765432 22322 456
Q ss_pred CCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEe--eCCCCcCcCCChHH
Q 009944 362 GDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCL--TEAITADALADDEE 439 (522)
Q Consensus 362 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l--~~~~~~~~l~~~~~ 439 (522)
....|.|.|..-+.......+...... +......+.... .....|+.+.+ ...+..++
T Consensus 96 ~S~~L~lsFV~l~y~~~~~~~~~~~~~--~~~~~~~L~~~i------------~~~gATRSl~IeF~~~~~~~d------ 155 (309)
T PF10567_consen 96 KSESLTLSFVSLNYQKKTDPNDEEADF--SDYLVASLQYNI------------INRGATRSLAIEFKDPVDKDD------ 155 (309)
T ss_pred CCcceeEEEEEEeccccccccccccch--hhHHhhhhhhee------------ecCCcceEEEEEecCccchhH------
Confidence 788888888764322211111000000 000001111000 01123344433 33332221
Q ss_pred HHHHHHHHHHHhhccC----CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCC
Q 009944 440 YEEILEDMREECGKYG----TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR 498 (522)
Q Consensus 440 ~~~~~~~l~~~f~~~G----~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~ 498 (522)
.+++.| .+...=+ .|+.|.|+......+ .-|..||.+.|-+...|...+.-|.-.
T Consensus 156 --l~~~kL-~fL~~~~n~RYVlEsIDlVna~~~~~-~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 156 --LIEKKL-PFLKNSNNKRYVLESIDLVNADEPSK-HFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred --HHHHhh-hhhccCCCceEEEEEEEEeccCcccc-cCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 222344 3333333 477788776553332 245678999999999999999887633
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.17 E-value=0.091 Score=48.49 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=45.3
Q ss_pred HHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEE-EEE
Q 009944 446 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVN-AFY 509 (522)
Q Consensus 446 ~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~-v~~ 509 (522)
-|-.+|++||+|++..... +| -+.+|.|.+.-+|.+||.. ||+.|+|..++ |.-
T Consensus 212 ~vL~~F~~cG~Vvkhv~~~---ng------NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVKHVTPS---NG------NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred HHHHHHHhhCeeeeeecCC---CC------ceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 6889999999999988873 33 3679999999999999995 99999998776 444
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.80 E-value=0.041 Score=53.90 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=50.2
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
.+|-..|..||+|+.|.|--.. -.|.|+|.+..+|-.|.. .++..|+|+-|+|.|...
T Consensus 388 a~ln~hfA~fG~i~n~qv~~~~---------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 388 ADLNPHFAQFGEIENIQVDYSS---------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhhhhhcCccccccccCch---------hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 5899999999999999885542 246999999999988876 599999999999999876
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.52 E-value=0.069 Score=46.85 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=51.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh-cCCc---eEEEEeeCCC-CC-CcceEEEEEEcChHHHHHHHHHHcCCccC---C-
Q 009944 294 PDRVFVGGLPYYFTETQIKELLES-FGTL---HGFDLVKDRD-TG-NSKGYGFCVYQDPAVTDIACAALNGLKMG---D- 363 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~-~G~i---~~v~~~~~~~-~g-~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g- 363 (522)
..+|.|++||+.+|++++.+.++. ++.. ..+.-..... .. ..-.-|||.|.+.+++..-+..++|+.|- |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 358999999999999999997776 5554 3333112211 11 12356999999999999999999997772 2
Q ss_pred -eEEEEEEccC
Q 009944 364 -KTLTVRRATA 373 (522)
Q Consensus 364 -~~l~v~~~~~ 373 (522)
....|.+|-.
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 4566777744
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.01 E-value=0.69 Score=36.89 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=40.4
Q ss_pred HHHHHhhccC-CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCC
Q 009944 446 DMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG 502 (522)
Q Consensus 446 ~l~~~f~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~G 502 (522)
+|..+.+.+- .|..++|.++.... .=.+.++|.+.++|..=....||+.|+-
T Consensus 29 ~l~~f~~~~~~~i~~~riird~~pn-----rymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 29 FLLFFGAPFREDIEHIRIIRDGTPN-----RYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred HHHHhhhcccccEEEEEEeeCCCCc-----eEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 6665555554 46778998876333 3478999999999999999999999854
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.86 E-value=0.28 Score=43.22 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHc--CCccCCeEEEEEEccC
Q 009944 307 TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVRRATA 373 (522)
Q Consensus 307 t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v~~~~~ 373 (522)
..+.|.++|..|+.+..+.+.+. -+-..|.|.+.++|..|...|+ +..|.|..++|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34789999999999877766543 2348999999999999999999 8999999999999854
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.78 E-value=0.69 Score=42.92 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=56.0
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCce-EE
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA-VR 252 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~-~~ 252 (522)
..-|-|-++|+..+ .-|..+|..||. |++..+.....+-+|.|.+.-+|.+||..||+.|.|-. |-
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~------------Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiG 263 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGE------------VVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIG 263 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCe------------eeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEe
Confidence 55688889988754 357789999998 66666677777999999999999999999999998854 45
Q ss_pred Eec
Q 009944 253 VRR 255 (522)
Q Consensus 253 v~~ 255 (522)
|..
T Consensus 264 Vkp 266 (350)
T KOG4285|consen 264 VKP 266 (350)
T ss_pred eee
Confidence 654
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.53 E-value=0.097 Score=55.03 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=62.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc--CCeEEEEEEccC
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATA 373 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~v~~~~~ 373 (522)
+..+.|.+...+-.-|..+|+.||.|.+++..++- ..|.|+|.+.+.|..|+++|+|+.+ -|-+.+|.++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34455666677788999999999999999987763 3699999999999999999999765 688899999876
Q ss_pred CCC
Q 009944 374 SSG 376 (522)
Q Consensus 374 ~~~ 376 (522)
-+.
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 543
No 207
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.26 E-value=0.84 Score=32.01 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=38.1
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~ 239 (522)
..|+|.|+ .+++-++|+.+|..|... .....+..-. -..|-|.|.+.+.|.+||
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~---------~~~~~IEWId-DtScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDE---------EGPFRIEWID-DTSCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhccc---------CCCceEEEec-CCcEEEEECCHHHHHHHH
Confidence 47999999 468889999999999211 0122232221 224889999999999998
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.43 E-value=0.9 Score=44.66 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=58.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (522)
...|+|-.+|..++-.||..|+..+-. |..|+++++.. ..+=.++|.|.+.++|..-...+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 568999999999999999999997765 88999999642 234578999999999999999999988854
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.40 E-value=0.54 Score=47.29 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=48.3
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc--cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHH
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGK--YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL 495 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~--~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~l 495 (522)
...+|++|..+.... -+++|+.+|.. .-++++|...-+. -=||+|++..||+.|.+.|
T Consensus 173 ~kRcIvilREIpett----------p~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 173 HKRCIVILREIPETT----------PIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred cceeEEEEeecCCCC----------hHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHH
Confidence 555666666553322 23689999974 6688888875543 1399999999999999888
Q ss_pred hCC--ccCCeEEEE
Q 009944 496 SGR--KFGGNTVNA 507 (522)
Q Consensus 496 ng~--~~~Gr~l~v 507 (522)
.-. .|-|+.|..
T Consensus 233 reevk~fqgKpImA 246 (684)
T KOG2591|consen 233 REEVKTFQGKPIMA 246 (684)
T ss_pred HHHHHhhcCcchhh
Confidence 543 366666554
No 210
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.22 E-value=0.31 Score=44.37 Aligned_cols=84 Identities=21% Similarity=0.463 Sum_probs=56.1
Q ss_pred CCCCCeEEEcCCCCCC------------CHHHHHHHHHhcCCceEEEEeeCC-----CCCCc-----ceE---------E
Q 009944 291 AEGPDRVFVGGLPYYF------------TETQIKELLESFGTLHGFDLVKDR-----DTGNS-----KGY---------G 339 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~------------t~~~l~~~F~~~G~i~~v~~~~~~-----~~g~~-----~g~---------a 339 (522)
.+.+.+|++.+||..| +++-|+..|+.||.|..|.|+... .+|.. .|| |
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 3456789998888543 567899999999999998887532 13333 233 3
Q ss_pred EEEEcChHHHHHHHHHHcCCcc----C----CeEEEEEEccCC
Q 009944 340 FCVYQDPAVTDIACAALNGLKM----G----DKTLTVRRATAS 374 (522)
Q Consensus 340 fV~f~~~~~A~~Al~~l~g~~~----~----g~~l~v~~~~~~ 374 (522)
||+|..-.--..||.+|.|..+ . .-.|+|.|....
T Consensus 226 yvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 5666666666778888877554 2 235777776543
No 211
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=90.76 E-value=0.34 Score=44.12 Aligned_cols=76 Identities=30% Similarity=0.440 Sum_probs=51.4
Q ss_pred CCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCC-----CCCCC----CCCccE-------EEE
Q 009944 417 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPD-----QNGGE----TPGVGK-------VFL 480 (522)
Q Consensus 417 ~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~-----~~g~~----~~g~G~-------afV 480 (522)
..|++++.|....+.+ |.. ..-|+..|+.||.|..|.|+.-. .+|.. .+|+|+ |||
T Consensus 156 ~ip~kwf~lkedg~~d-lps-------e~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 156 GIPCKWFALKEDGSED-LPS-------EDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCcceeeeeccccccc-CCh-------HHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3567777766554433 221 14899999999999999886532 23332 445555 678
Q ss_pred EecChHhHHHHHHHHhCCcc
Q 009944 481 EYYDAVGCATAKNALSGRKF 500 (522)
Q Consensus 481 ~F~~~~~A~~Ai~~lng~~~ 500 (522)
+|..-..-..||.+|.|+.+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 88777777888888888875
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.69 E-value=0.29 Score=50.40 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=54.7
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
..+.-+|||+|+...+..+-++..+..+|.|.. +... .|||..|..+..+..|+ .+....++|+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s------------~kr~---~fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPS------------WKRD---KFGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchh------------hhhh---hhcccchhhHHHHHHHHHHhcccCCCcc
Confidence 344568999999999999999999999987432 2211 29999999999999999 5777888888
Q ss_pred eEEEe
Q 009944 250 AVRVR 254 (522)
Q Consensus 250 ~~~v~ 254 (522)
.+.+.
T Consensus 102 kl~~~ 106 (668)
T KOG2253|consen 102 KLIEN 106 (668)
T ss_pred hhhcc
Confidence 77664
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.59 E-value=1.4 Score=32.39 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHhcCCc-----eEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 304 YYFTETQIKELLESFGTL-----HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 304 ~~~t~~~l~~~F~~~G~i-----~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
..++..+|..++...+.| -.|.+... |+||+.... .|..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 357888899988876554 45666543 799998755 788899999999999999999864
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.54 E-value=0.21 Score=52.68 Aligned_cols=72 Identities=13% Similarity=0.242 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCcc--CCeEEEEEEeCCcc
Q 009944 437 DEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF--GGNTVNAFYYPEDK 514 (522)
Q Consensus 437 ~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~--~Gr~l~v~~~~~~~ 514 (522)
+.....+-.-|..+|..||.|.++..+++- -.|.|+|.+.+.|..|+.+|+|+.+ .|-+.+|.|+.-..
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTLRDL---------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheecccc---------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344555566899999999999999987764 5789999999999999999999985 68889999987655
Q ss_pred ccc
Q 009944 515 YFN 517 (522)
Q Consensus 515 ~~~ 517 (522)
+..
T Consensus 376 ~~e 378 (1007)
T KOG4574|consen 376 MYE 378 (1007)
T ss_pred ccc
Confidence 443
No 215
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=90.07 E-value=0.23 Score=50.02 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=4.5
Q ss_pred HHHHHHhcCC
Q 009944 311 IKELLESFGT 320 (522)
Q Consensus 311 l~~~F~~~G~ 320 (522)
|++++.+||.
T Consensus 520 LRevLKKyG~ 529 (752)
T KOG0670|consen 520 LREVLKKYGR 529 (752)
T ss_pred HHHHHHHhCc
Confidence 4444444443
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.68 E-value=0.52 Score=46.24 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=54.1
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccC-CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
.-..++.+++.++.. ||..|+..|- .|..++|+++..... =.+.|+|.+.++|..-.+.+|
T Consensus 75 ~mLcilaVP~~mt~~-------------Dll~F~~~~~~~I~~irivRd~~pnr-----ymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 75 TMLCILAVPAYMTSH-------------DLLRFCASFIKQISDIRIVRDGMPNR-----YMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred cEEEEEeccccccHH-------------HHHHHHHHHhhhhheeEEeecCCCce-----EEEEEEeccchhHHHHHHHcC
Confidence 556777788887776 8888888765 588899999653332 468999999999999999999
Q ss_pred CCccCC
Q 009944 497 GRKFGG 502 (522)
Q Consensus 497 g~~~~G 502 (522)
|..|+-
T Consensus 137 Gk~Fn~ 142 (493)
T KOG0804|consen 137 GKQFNS 142 (493)
T ss_pred CCcCCC
Confidence 999864
No 217
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.40 E-value=0.67 Score=35.12 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=44.6
Q ss_pred EEEEEeCHHHHHHHHHhcC--ceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCC
Q 009944 225 AFVEMRTVEEASNAMALDG--IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGL 302 (522)
Q Consensus 225 afV~f~~~~~a~~a~~~~~--~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL 302 (522)
|+|+|..+.-|+..+.+.. ..+.+..+.|.- +++... ...... .......++|.|.||
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v-~P~~~~------------~~~k~q-------v~~~vs~rtVlvsgi 60 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV-SPVTLG------------HLQKFQ-------VFSGVSKRTVLVSGI 60 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE-EeEecC------------CceEEE-------EEEcccCCEEEEeCC
Confidence 6899999999999995443 446666666642 111000 000000 001234478999999
Q ss_pred CCCCCHHHHHHHHH
Q 009944 303 PYYFTETQIKELLE 316 (522)
Q Consensus 303 p~~~t~~~l~~~F~ 316 (522)
|...++++|++.++
T Consensus 61 p~~l~ee~l~D~Le 74 (88)
T PF07292_consen 61 PDVLDEEELRDKLE 74 (88)
T ss_pred CCCCChhhheeeEE
Confidence 99999999987654
No 218
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.07 E-value=0.46 Score=48.94 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
....++||+|+-..+..+-++.+...+|.|..+.... |||++|..+.-+..|+..++-..++|..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3456899999999999999999999999987765543 8999999999999999999988898888777653
No 219
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=87.22 E-value=0.29 Score=51.38 Aligned_cols=6 Identities=0% Similarity=-0.430 Sum_probs=2.8
Q ss_pred EEEEec
Q 009944 478 VFLEYY 483 (522)
Q Consensus 478 afV~F~ 483 (522)
+||.|.
T Consensus 972 ~~v~~d 977 (1194)
T KOG4246|consen 972 EAVVID 977 (1194)
T ss_pred ceeeec
Confidence 455543
No 220
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.30 E-value=1.6 Score=31.19 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=39.5
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEE
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNA 507 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v 507 (522)
++|+..+..|+-.. |.. +. + | -||.|.+..+|++|....+|..+.+-+|.+
T Consensus 15 ~d~K~~Lr~y~~~~-I~~--d~-t-------G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 15 EDFKKRLRKYRWDR-IRD--DR-T-------G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHhcCCcce-EEe--cC-C-------E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 58888888987654 222 22 2 4 499999999999999999999988877654
No 221
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.77 E-value=4.1 Score=38.81 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=5.2
Q ss_pred EEEEEcChHHHHHH
Q 009944 339 GFCVYQDPAVTDIA 352 (522)
Q Consensus 339 afV~f~~~~~A~~A 352 (522)
|||.-.+..-+..|
T Consensus 364 GYVMSGSRHrrMeA 377 (426)
T KOG2812|consen 364 GYVMSGSRHRRMEA 377 (426)
T ss_pred ceeeccchHHHHHH
Confidence 33433333333333
No 222
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.86 E-value=0.43 Score=41.86 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=41.5
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHH-HHHhhcCCCCCCCCceEEEE--ecC------CCcEEEEEEeCHHHHHHHH-Hhc
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVY--INH------EKKFAFVEMRTVEEASNAM-ALD 242 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~-~g~~~~~~~~~~~~~v~~~~--~~~------~~g~afV~f~~~~~a~~a~-~~~ 242 (522)
...+|.|++||+.+|++++.+.+.. ++.... ...+. .+. .-.-|||.|.+.+++..+. .++
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~---------w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD---------WYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE------------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccc---------eEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 3458999999999999999886665 332100 11221 111 1247999999999999998 699
Q ss_pred CceecC
Q 009944 243 GIIFEG 248 (522)
Q Consensus 243 ~~~~~g 248 (522)
|..|.+
T Consensus 77 g~~F~D 82 (176)
T PF03467_consen 77 GHVFVD 82 (176)
T ss_dssp TEEEE-
T ss_pred CcEEEC
Confidence 987754
No 223
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.05 E-value=14 Score=37.83 Aligned_cols=135 Identities=12% Similarity=0.165 Sum_probs=79.7
Q ss_pred hhcccceeEEeCCCcc-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecC
Q 009944 170 ATRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~-~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 248 (522)
....+++|-|-||.+. +...+|.-+|+.|-+ ++..|+.|.+..+. |.-.. |..-.+.|
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP--------~gGsilSV~IYpSe------FGkeR-------M~eEeV~G 228 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLP--------KGGSILSVKIYPSE------FGKER-------MKEEEVHG 228 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcC--------CCCceeEEEechhh------hhHHH-------hhhhcccC
Confidence 3556789999999998 789999999999954 45578888775542 11111 22223344
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEee
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~ 328 (522)
-++.+-.+...... .. .+....+.-.+.-+..|+ +..++.
T Consensus 229 P~~el~~~~e~~~~--------------------------------s~-----sD~ee~~~~~~~kLR~Yq-~~rLkY-- 268 (650)
T KOG2318|consen 229 PPKELFKPVEEYKE--------------------------------SE-----SDDEEEEDVDREKLRQYQ-LNRLKY-- 268 (650)
T ss_pred ChhhhccccccCcc--------------------------------cc-----cchhhhhhHHHHHHHHHH-hhhhee--
Confidence 43333211110000 00 111111112344444453 222222
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC--CeEEEEEEccC
Q 009944 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTVRRATA 373 (522)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~v~~~~~ 373 (522)
-||.|+|.+++.|......++|..|. +..|-+.|...
T Consensus 269 --------YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 269 --------YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred --------EEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 27999999999999999999999985 56677777643
No 224
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=81.63 E-value=1.5 Score=39.31 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=7.2
Q ss_pred cceEEEEEEcChH
Q 009944 335 SKGYGFCVYQDPA 347 (522)
Q Consensus 335 ~~g~afV~f~~~~ 347 (522)
++-.|.|+|...+
T Consensus 215 SKQHaviQyR~v~ 227 (293)
T KOG1882|consen 215 SKQHAVIQYRLVE 227 (293)
T ss_pred cccceeeeeeecc
Confidence 3445666666543
No 225
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.33 E-value=7.3 Score=27.80 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEE
Q 009944 305 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (522)
Q Consensus 305 ~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (522)
.++-++|+..+.+|+-. +|..++ + | =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999643 333442 2 3 389999999999999999999988877654
No 226
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=80.09 E-value=4.4 Score=28.23 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhccCCeEEEEecCCCCC
Q 009944 441 EEILEDMREECGKYGTLVNVVIPRPDQN 468 (522)
Q Consensus 441 ~~~~~~l~~~f~~~G~I~~v~i~~~~~~ 468 (522)
+.+..+|+++|+..|.|.-+.+.....+
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~~eS~ 32 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNPYESD 32 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEcccccC
Confidence 4677899999999999998777555433
No 227
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.44 E-value=5.8 Score=29.09 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=30.8
Q ss_pred HHHHHhhccC-----CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEe
Q 009944 446 DMREECGKYG-----TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510 (522)
Q Consensus 446 ~l~~~f~~~G-----~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~ 510 (522)
+|..++...+ .|-.|.|.. -++||+-.. +.|..++..|++..+.|++|.|..+
T Consensus 17 ~iv~~i~~~~gi~~~~IG~I~I~~-----------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 17 DIVGAICNEAGIPGRDIGRIDIFD-----------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHTCTTB-GGGEEEEEE-S-----------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHhccCCCHHhEEEEEEee-----------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5555555443 366677755 366888865 5799999999999999999999764
No 228
>PF02956 TT_ORF1: TT viral orf 1; InterPro: IPR004219 Torque teno virus, isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein.
Probab=72.97 E-value=3.2 Score=43.31 Aligned_cols=6 Identities=17% Similarity=0.684 Sum_probs=2.4
Q ss_pred eEEEec
Q 009944 250 AVRVRR 255 (522)
Q Consensus 250 ~~~v~~ 255 (522)
+|+|..
T Consensus 207 ki~i~P 212 (525)
T PF02956_consen 207 KIRIKP 212 (525)
T ss_pred EEEECC
Confidence 344443
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=67.23 E-value=4.6 Score=34.38 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=75.7
Q ss_pred ceeEEeCCC--ccCcHHHHHHHHHHH-HHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceE
Q 009944 175 RRVYVGGLP--PLANEQAIATFFSQV-MTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (522)
Q Consensus 175 ~~v~v~nlp--~~~t~~~l~~~f~~~-g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~ 251 (522)
+...|+.+. ..++-..|...+... +. ...+.-..+ ..++..+.|.+.+++..++......+.+..+
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~---------~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~ 84 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKL---------KGGVKIRDL--GDNLFLFQFESEEDRQRVLKGGPWNFNGHFL 84 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCC---------CCcEEEEEe--CCCeEEEEEEeccceeEEEecccccccccch
Confidence 345555552 235566666666653 11 001222222 5689999999999999999877778888888
Q ss_pred EEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEee
Q 009944 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVK 328 (522)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~~~~ 328 (522)
.++..++...... . . .....--|.|.|||.. .+++-|..+.+.+|.+..+....
T Consensus 85 ~l~~W~~~~~~~~-------~--~--------------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 85 ILQRWSPDFNPSE-------V--K--------------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhhhcccccccc-------c--c--------------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 8875442211100 0 0 0011124778999988 78888999999999998887654
No 230
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.04 E-value=31 Score=32.05 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=35.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCc-eEEEEeeCCCCCCcceEEEEEEcCh
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDP 346 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~ 346 (522)
.-|+|+||+.++--.||+..+.+.+.+ .+|.+.- ..|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 459999999999999999999987764 3444322 356799999764
No 231
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=66.19 E-value=6.4 Score=33.99 Aligned_cols=58 Identities=12% Similarity=0.223 Sum_probs=44.9
Q ss_pred HHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCe-EEEEEEeCC
Q 009944 446 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN-TVNAFYYPE 512 (522)
Q Consensus 446 ~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr-~l~v~~~~~ 512 (522)
....+|..|-+..-..+.+ +++...|-|.+++.|..|...+++..|.|+ .+++.|+..
T Consensus 31 ~~~~lFrq~n~~~~fq~lr---------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLLR---------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHhHHhhhCcchHHHHHH---------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 4456666666665555544 367889999999999999999999999998 777777654
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=61.05 E-value=24 Score=32.73 Aligned_cols=49 Identities=4% Similarity=0.007 Sum_probs=39.4
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHH
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEE 234 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~ 234 (522)
..|+|+||+.++.-.||+..+.+.|-. -..+......|-||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-----------pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-----------PMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-----------ceeEeeecCCcceeEecCCccC
Confidence 349999999999999999999987642 4556666778899999987543
No 233
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=59.10 E-value=11 Score=32.67 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=53.0
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCe-EEE
Q 009944 294 PDRVFVGGLPYYFTE-----TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TLT 367 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~-----~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~ 367 (522)
+..+++.+++..+-. .....+|-.|....-..+.+ +.+..-|-|.+++.|..|...+++..|.|. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 345777777655322 34455666666554444443 345678899999999999999999999887 888
Q ss_pred EEEccCC
Q 009944 368 VRRATAS 374 (522)
Q Consensus 368 v~~~~~~ 374 (522)
.-++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 8888664
No 234
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.93 E-value=16 Score=29.54 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=28.9
Q ss_pred CeEEEcCCCCCC---------CHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHH
Q 009944 295 DRVFVGGLPYYF---------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349 (522)
Q Consensus 295 ~~l~v~nLp~~~---------t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A 349 (522)
.++.|.|++... +.+.|.+.|+.|.++. +....++ .-..|+++|+|...-..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHH
Confidence 367788886544 4478999999999986 4444543 24579999999875543
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.72 E-value=25 Score=34.33 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=46.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHH
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 355 (522)
-+..|-|.++|.....+||...|+.|+. =..|+++-+. .||..|.+...|..||-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3467889999999999999999999987 3567777653 599999999999999763
No 236
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.84 E-value=9 Score=37.54 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=5.4
Q ss_pred CcHHHHHHHHHH
Q 009944 186 ANEQAIATFFSQ 197 (522)
Q Consensus 186 ~t~~~l~~~f~~ 197 (522)
++++++..-+.+
T Consensus 361 LSe~E~~arl~e 372 (450)
T KOG3869|consen 361 LSEAERAARLRE 372 (450)
T ss_pred ccHHHHHHHHHH
Confidence 445554444443
No 237
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=45.62 E-value=49 Score=23.78 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=42.0
Q ss_pred HHHHHHhhccC-CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 445 EDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 445 ~~l~~~f~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
++|.+.|...| .|..|.-+....+..+ .-..||+.+...+.. +.++=..++|..|.|+..-
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~p---l~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKP---LNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCC---ceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 36777777778 5677766666544444 567799988876633 3456688999999987643
No 238
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=45.62 E-value=58 Score=23.41 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 309 TQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 309 ~~l~~~F~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
++|.+.|...|- |..|.-+....++.....-||++....+...+ ++=..+++..|+|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 578888888875 77777777766677778889999887664433 333678999999987654
No 239
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=44.61 E-value=44 Score=24.00 Aligned_cols=62 Identities=26% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 309 TQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 309 ~~l~~~F~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.+|.+.|..+|- +..|..+....++.....-||+.....+-.. .|+=..++|+.|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 468899999885 7788888877777777788888877654443 2344678999999987643
No 240
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=43.52 E-value=47 Score=23.84 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=40.9
Q ss_pred HHHHHhhccC-CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEe
Q 009944 446 DMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510 (522)
Q Consensus 446 ~l~~~f~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~ 510 (522)
+|.+.|..+| .+..|.-+....+..+ .-..||+-....+-.. .|+=..++|++|.|+-.
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P---~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNP---QNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCc---ceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 6778888888 5777777766654444 4566888776644443 56677889999888654
No 241
>PRK11901 hypothetical protein; Reviewed
Probab=40.43 E-value=33 Score=32.87 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=41.9
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
...+.+.|.-....+ .|..|...++ +..+.+.....+|.++ +...|=.|.+.++|..|+..|--
T Consensus 243 ~~~YTLQL~Aas~~~-------------~L~~f~~~~~-L~~~~VYqT~RnGkpW--YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSSASRSD-------------TLNAYAKKQN-LSHYHVYETKRDGKPW--YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeecCCCHH-------------HHHHHHHHcC-cCceEEEEEEECCceE--EEEEecCcCCHHHHHHHHHhCCH
Confidence 455666666554443 6777777775 4556665555566553 23345589999999999998743
No 242
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=39.48 E-value=11 Score=41.53 Aligned_cols=8 Identities=63% Similarity=1.045 Sum_probs=4.4
Q ss_pred hcCceecC
Q 009944 241 LDGIIFEG 248 (522)
Q Consensus 241 ~~~~~~~g 248 (522)
+.|.++.|
T Consensus 350 l~~i~v~g 357 (997)
T KOG0334|consen 350 LDGIKVKG 357 (997)
T ss_pred ccceeecc
Confidence 55555555
No 243
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=38.78 E-value=49 Score=34.29 Aligned_cols=11 Identities=18% Similarity=0.417 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q 009944 437 DEEYEEILEDM 447 (522)
Q Consensus 437 ~~~~~~~~~~l 447 (522)
+.||-.+++.|
T Consensus 766 D~Wyg~LK~~i 776 (1027)
T KOG3580|consen 766 DSWYGSLKDTI 776 (1027)
T ss_pred hhHHHHHHHHH
Confidence 34555444444
No 244
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.67 E-value=5.7 Score=39.05 Aligned_cols=77 Identities=6% Similarity=-0.238 Sum_probs=58.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
.+.|+..||..+++.++.-+|..||.|.-+.+...-..|...-.+||.-.+ +.|..+|..+....+.|..+.|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 467888999999999999999999999888877665566667778887664 35666777776666777766666553
No 245
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=38.60 E-value=3.6 Score=32.99 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCCC
Q 009944 124 LPGAAVPGQLPGVP 137 (522)
Q Consensus 124 ~~~~~~~g~~p~~~ 137 (522)
++..-..|.+|+-|
T Consensus 84 IPVPvyy~nfpp~p 97 (146)
T PF11671_consen 84 IPVPVYYGNFPPRP 97 (146)
T ss_pred cccceEecCCCCCc
Confidence 33334555665544
No 246
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=37.63 E-value=92 Score=27.06 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=36.1
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG 501 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~ 501 (522)
++|.++-+ |++..|.+..-.+.. ..-+|-.||+|.+.++|.+.++. +...+.
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~~k~--~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~ 175 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHGNKA--HPFKGSVKVTFQTKEQAFANDDT-HEEKGA 175 (205)
T ss_pred HHHHHHhc--ccceEeeccccCCCC--CCCCCceEEEeecHHHHHhhhhh-hhhhcc
Confidence 57777766 899988876554332 23357789999999999998775 333333
No 247
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.49 E-value=5.5 Score=40.45 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=53.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeE
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (522)
.+.||+.|+++.++-.+|..+|+.+..+..+.+...........+++|.|..--...-|+-+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 357999999999999999999999877766655443222233456889998777777777778876665443
No 248
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=36.44 E-value=45 Score=36.50 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=36.9
Q ss_pred ccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccccc
Q 009944 475 VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 517 (522)
Q Consensus 475 ~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~~~ 517 (522)
.+.|||+|++.-.|+.|.+........+-++.....|+|.++.
T Consensus 305 ~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~ 347 (728)
T KOG1134|consen 305 LPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWD 347 (728)
T ss_pred CceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceec
Confidence 4789999999999999999888888888888777777787764
No 249
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.11 E-value=90 Score=21.91 Aligned_cols=18 Identities=11% Similarity=0.432 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCceEEEE
Q 009944 309 TQIKELLESFGTLHGFDL 326 (522)
Q Consensus 309 ~~l~~~F~~~G~i~~v~~ 326 (522)
.+|+++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999875543
No 250
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.66 E-value=94 Score=30.60 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=43.7
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhc
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALD 242 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 242 (522)
..-|-|.++|....-+||...|..|+.- -.+|... ....||-.|.+...|..||.+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-----------gfdIkWv-DdthalaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-----------GFDIKWV-DDTHALAVFSSVNRAAEALTLK 447 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-----------CceeEEe-ecceeEEeecchHHHHHHhhcc
Confidence 4568899999999889999999999751 1222221 3457999999999999999663
No 251
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=33.67 E-value=1.6e+02 Score=23.87 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=39.3
Q ss_pred cCcCCChHHHHHHHHHHHHHhhccCCeEE-EE-ecCCCCCCCCCCCccEEEEEe--cChHhHHHHHHHHhCCccCCeEEE
Q 009944 431 ADALADDEEYEEILEDMREECGKYGTLVN-VV-IPRPDQNGGETPGVGKVFLEY--YDAVGCATAKNALSGRKFGGNTVN 506 (522)
Q Consensus 431 ~~~l~~~~~~~~~~~~l~~~f~~~G~I~~-v~-i~~~~~~g~~~~g~G~afV~F--~~~~~A~~Ai~~lng~~~~Gr~l~ 506 (522)
++++..+..+..+++.+.++|..+|.-.- .. +.-++. .+.+.|.. ...+.+..|+..++ .++|.++.
T Consensus 26 ~~~~~~~~l~~~Ir~av~~~fGd~G~~~~~~~li~f~~~-------t~~gIlRc~R~~~~~v~aAL~li~--~i~~~~v~ 96 (120)
T PRK03717 26 ERPFTKDEIKKAIWEASLSTLGELGTARAKPWFIKFDEK-------TQTGIVRCDRKHVEELRFALTLVT--EINGSKAI 96 (120)
T ss_pred CCCCCHHHHHHHHHHHHHHHcChhhhccccceEEEEeCC-------CCEEEEEcCchhHHHHHHHHHHHH--hCCCeeEE
Confidence 44566677788899999999999986211 11 111221 13445554 34445666666555 45666555
Q ss_pred E
Q 009944 507 A 507 (522)
Q Consensus 507 v 507 (522)
+
T Consensus 97 i 97 (120)
T PRK03717 97 I 97 (120)
T ss_pred E
Confidence 4
No 252
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.64 E-value=2.2e+02 Score=21.50 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=41.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHH
Q 009944 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (522)
Q Consensus 297 l~v~nLp~~~t~~~l~~~F~~-~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 356 (522)
-|+--.+..++..+|++.++. ||. |..|....-+ ...--|||.+...+.|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 344456889999999999996 665 6777666543 23345999999998888765544
No 253
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=64 Score=33.42 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=35.4
Q ss_pred cEEEEEecChHhHHHHHHHHhCCccC--CeEEEEEEeCCcc
Q 009944 476 GKVFLEYYDAVGCATAKNALSGRKFG--GNTVNAFYYPEDK 514 (522)
Q Consensus 476 G~afV~F~~~~~A~~Ai~~lng~~~~--Gr~l~v~~~~~~~ 514 (522)
=||.|+|.+++.|.+......|..|+ |..|-+.|+|.+.
T Consensus 269 YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 269 YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred EEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 47999999999999999999999995 7889999999765
No 254
>PRK12678 transcription termination factor Rho; Provisional
Probab=32.07 E-value=90 Score=33.06 Aligned_cols=10 Identities=20% Similarity=-0.017 Sum_probs=5.1
Q ss_pred CCeEEEEEEc
Q 009944 362 GDKTLTVRRA 371 (522)
Q Consensus 362 ~g~~l~v~~~ 371 (522)
.|+.|.|-+.
T Consensus 501 ~G~dVlillD 510 (672)
T PRK12678 501 LGKDVVVLLD 510 (672)
T ss_pred cCCCEEEEEe
Confidence 4555555543
No 255
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.84 E-value=77 Score=22.97 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=22.5
Q ss_pred EEEEEecChHhHHHHHHHHhCCccCCe
Q 009944 477 KVFLEYYDAVGCATAKNALSGRKFGGN 503 (522)
Q Consensus 477 ~afV~F~~~~~A~~Ai~~lng~~~~Gr 503 (522)
..+|.|.+..+|.+|-+.|...-+.++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 469999999999999999987766443
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.51 E-value=46 Score=32.59 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=46.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeeCCCC--CCcceEEEEEEcChHHHHHHHHHHcCCcc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGLKM 361 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~~~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~ 361 (522)
..|.|..||+..++++|.+-...|-. +.+..+...... ..-.+.|||.|...++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 47899999999999999988887654 334444422111 11246799999999997766666676554
No 257
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.47 E-value=31 Score=33.73 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=45.6
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-cCCCcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-NHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
...|.|.+||+.+++.+|.+.+..|-.-..+... .+ -+..+ ..-.+.|||.|...++..... -++|.+|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F---~~-a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFF---AK-ADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchhee---cc-ccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4679999999999999999888775321110000 00 00000 112468999999999988887 48887654
No 258
>PF14893 PNMA: PNMA
Probab=30.37 E-value=42 Score=32.71 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=42.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh----cCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLES----FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~----~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
+.-+.|.|.+||.++++++|.+.+.. .|...-+--+..++.+ .-.|+|+|...-+-...=.. ..-.|..-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~~n~~~iP~~---i~g~gg~W~ 90 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAEDVNYSLIPRE---IPGKGGPWR 90 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccccchhhCchh---cCCCCCceE
Confidence 34467999999999999999888773 4432211111111122 33689998754322211111 222466777
Q ss_pred EEEccC
Q 009944 368 VRRATA 373 (522)
Q Consensus 368 v~~~~~ 373 (522)
|-+-.+
T Consensus 91 Vv~~p~ 96 (331)
T PF14893_consen 91 VVFKPP 96 (331)
T ss_pred EEecCC
Confidence 766543
No 259
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=30.09 E-value=1.5e+02 Score=25.17 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhccC-CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 442 EILEDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 442 ~~~~~l~~~f~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
.+...|.......| .|.+|.++..- .||.||+....+++..++..+.|
T Consensus 20 ~V~~~L~~~~~~~~~~i~~i~vp~~f--------pGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 20 NVALMLAMRAKKENLPIYAILAPPEL--------KGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHHHHhCCCcEEEEEccCCC--------CcEEEEEEEChHHHHHHHhcCCC
Confidence 34455655554222 27777777643 38999999988999999887765
No 260
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=29.89 E-value=20 Score=39.81 Aligned_cols=8 Identities=0% Similarity=-0.234 Sum_probs=2.9
Q ss_pred hHhHHHHH
Q 009944 485 AVGCATAK 492 (522)
Q Consensus 485 ~~~A~~Ai 492 (522)
.+.|..+.
T Consensus 623 qe~~d~l~ 630 (997)
T KOG0334|consen 623 QEKADALL 630 (997)
T ss_pred chHHHHHH
Confidence 33333333
No 261
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=28.59 E-value=22 Score=25.48 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=26.3
Q ss_pred HHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 446 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 446 ~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
+|.+.|..++....+.-+ .+|..|++.++|..++.++.
T Consensus 28 ~v~~~~~~~~~f~k~vkL-------------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 28 EVQKSFSDPEKFSKIVKL-------------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHcCHHHHhhhhhh-------------hhccCCCCHHHHHHHHHHhh
Confidence 677777665555443222 34999999999999888764
No 262
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.17 E-value=18 Score=35.82 Aligned_cols=65 Identities=5% Similarity=-0.161 Sum_probs=52.6
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
.++..+|..||.|..+.+.+..+.| -|.-++||.-.+ .+|..+|..+.-..+.|.+++++.+++.
T Consensus 18 ~~~~~~~~d~~~i~~~d~~~~~~~~---~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 18 DQNSMKHEDPSIISMEDGSPYVNGS---LGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred chhhhhccCCcceeeccCCccccCC---cceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 4888999999999999887776543 235567888765 6789999999989999999999888763
No 263
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.04 E-value=94 Score=23.34 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=24.8
Q ss_pred CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCcc
Q 009944 456 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF 500 (522)
Q Consensus 456 ~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~ 500 (522)
.|.+|..+..- +|+.||+=.+..+...|+..+-+-..
T Consensus 33 ~I~Si~~~~~l--------kGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDSL--------KGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TTS--------TSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCCC--------ceEEEEEeCCHHHHHHHHhcccceee
Confidence 56666665432 59999999999999999987765543
No 264
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=27.87 E-value=1.5e+02 Score=24.22 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=29.3
Q ss_pred EEEEecC--------hHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 478 VFLEYYD--------AVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 478 afV~F~~--------~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
|||+|.+ .+-|..=++.+|...=-|..|.|.-++-++
T Consensus 21 AFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide 65 (129)
T COG1098 21 AFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE 65 (129)
T ss_pred eEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc
Confidence 8999988 466777788888888889888888776655
No 265
>PRK11901 hypothetical protein; Reviewed
Probab=27.83 E-value=1.2e+02 Score=29.19 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=40.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEE--EEEcChHHHHHHHHHHc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF--CVYQDPAVTDIACAALN 357 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~af--V~f~~~~~A~~Al~~l~ 357 (522)
..+|-|..+ ..++.|..|...++ +..+.+......|+.+ |.+ =.|.+.++|..|+..|-
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCC
Confidence 345655554 45778888888775 4556666554567665 333 37999999999999885
No 266
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=27.42 E-value=2.9e+02 Score=21.20 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHhhccCCeEEEEe-cCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEE
Q 009944 437 DEEYEEILEDMREECGKYGTLVNVVI-PRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 508 (522)
Q Consensus 437 ~~~~~~~~~~l~~~f~~~G~I~~v~i-~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~ 508 (522)
+..+..+.+.|.+.|.--. -..+.| ..|. .|. +|.+.+.+|=..|+..+ ...-.+++|++.
T Consensus 24 d~~~~~L~~kI~~~f~l~~-~~~~~l~Y~De-dgd--------~V~l~~D~DL~~a~~~~-~~~~~~~~lrl~ 85 (91)
T cd06398 24 DLNMDGLREKVEELFSLSP-DADLSLTYTDE-DGD--------VVTLVDDNDLTDAIQYF-CSGSRLNPLRID 85 (91)
T ss_pred CCCHHHHHHHHHHHhCCCC-CCcEEEEEECC-CCC--------EEEEccHHHHHHHHHHH-hccCCCceEEEE
Confidence 4568888899999996432 122222 3333 332 99999999999999963 233344555554
No 267
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=27.40 E-value=61 Score=35.22 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=33.3
Q ss_pred ccEEEEEecChHhHHHHHHHHhCCccCC-eEEEEEEeCCccccc
Q 009944 475 VGKVFLEYYDAVGCATAKNALSGRKFGG-NTVNAFYYPEDKYFN 517 (522)
Q Consensus 475 ~G~afV~F~~~~~A~~Ai~~lng~~~~G-r~l~v~~~~~~~~~~ 517 (522)
.+.|||+|++...|+.|-+..-+..+.| -++.+..++.|..+.
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~ 400 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWD 400 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccc
Confidence 3567999999999999998865555544 448888888877654
No 268
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=26.56 E-value=2.3e+02 Score=19.73 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=27.9
Q ss_pred HHHHHHhhccC-CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCC
Q 009944 445 EDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR 498 (522)
Q Consensus 445 ~~l~~~f~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~ 498 (522)
.+|.++|...| .|.++.+.... +.+...+.+.+.+.|.++++. +|.
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~-------~~~~~rl~~~~~~~~~~~L~~-~G~ 62 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTS-------EFGILRLIVSDPDKAKEALKE-AGF 62 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecC-------CCCEEEEEECCHHHHHHHHHH-CCC
Confidence 47888888777 58888764422 125555666665566665553 444
No 269
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.25 E-value=2.9e+02 Score=23.33 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=37.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHH
Q 009944 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354 (522)
Q Consensus 297 l~v~nLp~~~t~~~l~~~F~~-~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~ 354 (522)
-|+--++...+..+|.+.++. |+. |..|..+.-+. | .--|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHH
Confidence 444457889999999999996 664 66666555432 2 2359999988777654433
No 270
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=25.86 E-value=3.7e+02 Score=21.97 Aligned_cols=81 Identities=17% Similarity=0.069 Sum_probs=51.1
Q ss_pred EEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCe-EEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccC
Q 009944 423 LCLTEAITADALADDEEYEEILEDMREECGKYGTL-VNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG 501 (522)
Q Consensus 423 ~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I-~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~ 501 (522)
+..-...++.++...+....|+..+.++|..+|.= -...+...... .+.|..-+.=...+.+..|+..+. .++
T Consensus 18 Yiaf~vise~~i~~~~l~~~I~~s~l~llG~~gta~~~~~lv~~~~~----t~~GIvrc~R~~~~~v~aAL~l~~--~~~ 91 (124)
T COG1369 18 YIAFEVISEEEITRGELVRLIRRSLLSLLGDVGTAKANPRLVKYYFS----TGTGIVRCRREYVDLVRAALMLAR--EVN 91 (124)
T ss_pred EEEEEEeccccCChhHHHHHHHHHHHHHcCcccccccceeEEEEecc----CCceEEEEechhHHHHHHHHHHHH--HhC
Confidence 33333445566777777788888888888888852 22333222211 234766666677788888888766 777
Q ss_pred CeEEEEEE
Q 009944 502 GNTVNAFY 509 (522)
Q Consensus 502 Gr~l~v~~ 509 (522)
|++|.+.-
T Consensus 92 g~rv~I~~ 99 (124)
T COG1369 92 GKRVIIVV 99 (124)
T ss_pred CceEEEEE
Confidence 87777643
No 271
>PRK12678 transcription termination factor Rho; Provisional
Probab=25.76 E-value=1.2e+02 Score=32.08 Aligned_cols=12 Identities=0% Similarity=-0.357 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 009944 188 EQAIATFFSQVM 199 (522)
Q Consensus 188 ~~~l~~~f~~~g 199 (522)
...|+.|.-.-|
T Consensus 325 ~~qirr~~Lr~G 336 (672)
T PRK12678 325 MNQVRKNGLRKG 336 (672)
T ss_pred HHHHHHcCCCCC
Confidence 344544433333
No 272
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=25.16 E-value=2.9e+02 Score=20.46 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=40.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHH
Q 009944 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (522)
Q Consensus 297 l~v~nLp~~~t~~~l~~~F~~-~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 356 (522)
-|+-.++...+..+|+..++. ||. |..|....-+ ...--|||.+..-+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 444567899999999999996 664 6666655543 13345999999888887765443
No 273
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=25.04 E-value=2.8e+02 Score=21.17 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhh-ccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCcc--CCeEEEEEE
Q 009944 440 YEEILEDMREECG-KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF--GGNTVNAFY 509 (522)
Q Consensus 440 ~~~~~~~l~~~f~-~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~--~Gr~l~v~~ 509 (522)
..++...|..+|. +|-.|..=.. . ...+-|..-.++..||+.++.+.. .|.+|.+-.
T Consensus 20 K~wLl~~iq~~c~v~F~Pv~fh~~-~------------~~a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki~I~V 79 (88)
T PF09162_consen 20 KDWLLNSIQSHCSVPFTPVDFHYE-K------------NRAQFFVEDASTASALKDVSRKICDEDGFKISIFV 79 (88)
T ss_dssp HHHHHHHHHHHSSS----EEEEEE-T------------TEEEEEESSHHHHHHHHTTTTTEEBTTSBEE--EE
T ss_pred HHHHHHHHHHHCCCCeeeeeeeee-C------------CEEEEEeCCHHHHHHHHHCCCceECCCCCEEEEEE
Confidence 4566777888886 7777763333 2 126677777888889998877765 578887644
No 274
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.35 E-value=2.4e+02 Score=20.56 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
.+|.+.+..+| +..+.+.- . .|-+++|+-|.+.+.|..+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sG-----s--G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSG-----S--GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEET-----T--SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCC-----C--CCCCeEEEEECCHHHHHHHHHHHH
Confidence 47778888999 55566632 1 112678888889999999988874
No 275
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=23.64 E-value=1.1e+02 Score=27.42 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=39.3
Q ss_pred HHHHHhhccCC---eEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccC-------CeEEEEEEeCCccc
Q 009944 446 DMREECGKYGT---LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-------GNTVNAFYYPEDKY 515 (522)
Q Consensus 446 ~l~~~f~~~G~---I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~-------Gr~l~v~~~~~~~~ 515 (522)
++.+.....|. |.+..+.. |. +|++-+..--.++++|..+...|=|..+. |.++.--++.+...
T Consensus 29 ea~~~~~~l~~~~~VvKaQvl~----Gg--RGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~ 102 (202)
T PF08442_consen 29 EAREAAKELGGKPLVVKAQVLA----GG--RGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFVD 102 (202)
T ss_dssp HHHHHHHHHTTSSEEEEE-SSS----ST--TTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE---
T ss_pred HHHHHHHHhCCCcEEEEEeEee----cC--cccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecCc
Confidence 55555555553 66666654 32 33332244456899999999999999987 87777666655444
Q ss_pred ccc
Q 009944 516 FNK 518 (522)
Q Consensus 516 ~~~ 518 (522)
...
T Consensus 103 ~~~ 105 (202)
T PF08442_consen 103 IKR 105 (202)
T ss_dssp CCE
T ss_pred cCc
Confidence 433
No 276
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=23.42 E-value=48 Score=27.97 Aligned_cols=62 Identities=5% Similarity=0.007 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 439 EYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 439 ~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
.+..+...|.......|.+.-..+- .++..++|.+.+++.+++. .....|+|..|.+.-.++
T Consensus 30 ~~~~l~~~l~~~W~~~~~~~i~~l~-----------~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 30 SLSALEQELAKIWKLKGGVKIRDLG-----------DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSP 91 (153)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEEeC-----------CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcc
Confidence 4566777888888888877655552 2678999999999999988 366667888887776653
No 277
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.95 E-value=2.7e+02 Score=19.44 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=28.3
Q ss_pred HHHHHHhhccC-CeEEEEecCCCCCCCCCCCccEEEEEec--ChHhHHHHHHHHhCCcc
Q 009944 445 EDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYY--DAVGCATAKNALSGRKF 500 (522)
Q Consensus 445 ~~l~~~f~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~--~~~~A~~Ai~~lng~~~ 500 (522)
..|..+|..+| .|.++....... .+.+..+|.+. +.+++..+++. +|..+
T Consensus 16 ~~i~~~l~~~~inI~~i~~~~~~~-----~~~~~v~i~v~~~~~~~~~~~L~~-~G~~v 68 (72)
T cd04883 16 ADIAAIFKDRGVNIVSVLVYPSKE-----EDNKILVFRVQTMNPRPIIEDLRR-AGYEV 68 (72)
T ss_pred HHHHHHHHHcCCCEEEEEEeccCC-----CCeEEEEEEEecCCHHHHHHHHHH-CCCee
Confidence 47888888887 577776543221 12345566665 44455555553 45543
No 278
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.65 E-value=2.6e+02 Score=23.34 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHc
Q 009944 301 GLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (522)
Q Consensus 301 nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 357 (522)
.|+..+.++-|.++++-.|.|.... -.| -.+.|.+.+...+||+.+-
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 3788899999999999999986654 222 4568999999999998763
No 279
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=20.62 E-value=92 Score=28.37 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=26.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEE
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v 324 (522)
..+||+-|+|..+|++.|..+.+.+|.+..+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3689999999999999999999998865443
Done!