Query 009944
Match_columns 522
No_of_seqs 373 out of 3329
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 16:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.6E-41 5.6E-46 326.2 28.2 247 170-514 18-265 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-41 1.1E-45 325.5 25.5 249 169-513 36-291 (292)
3 2yh0_A Splicing factor U2AF 65 100.0 1.4E-31 4.8E-36 242.7 25.2 193 173-375 3-195 (198)
4 2g4b_A Splicing factor U2AF 65 100.0 6.9E-32 2.4E-36 238.9 22.4 170 173-372 3-172 (172)
5 3md3_A Nuclear and cytoplasmic 100.0 9.3E-31 3.2E-35 230.2 18.8 159 175-372 1-165 (166)
6 4f02_A Polyadenylate-binding p 100.0 6.2E-31 2.1E-35 240.7 17.4 167 172-373 13-180 (213)
7 1fje_B Nucleolin RBD12, protei 100.0 1.8E-30 6.2E-35 230.4 19.2 165 171-374 10-174 (175)
8 4f02_A Polyadenylate-binding p 100.0 5.2E-31 1.8E-35 241.2 15.6 169 292-513 13-181 (213)
9 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-30 5.4E-35 229.2 16.0 164 173-371 2-168 (168)
10 1l3k_A Heterogeneous nuclear r 100.0 4E-30 1.4E-34 232.7 18.4 171 170-376 9-185 (196)
11 1b7f_A Protein (SXL-lethal pro 100.0 4.3E-30 1.5E-34 226.4 17.7 164 294-510 3-168 (168)
12 1fxl_A Paraneoplastic encephal 100.0 7.5E-30 2.6E-34 224.6 18.7 164 294-510 2-167 (167)
13 1fxl_A Paraneoplastic encephal 100.0 1.5E-29 5.1E-34 222.7 19.6 157 174-371 2-167 (167)
14 3md3_A Nuclear and cytoplasmic 100.0 6.7E-30 2.3E-34 224.6 17.2 166 295-512 1-166 (166)
15 2qfj_A FBP-interacting repress 100.0 1E-29 3.5E-34 233.8 18.2 177 169-375 23-206 (216)
16 2cjk_A Nuclear polyadenylated 100.0 6.8E-31 2.3E-35 231.3 7.2 159 173-374 2-166 (167)
17 2qfj_A FBP-interacting repress 100.0 3.7E-29 1.3E-33 230.0 17.6 179 294-514 28-206 (216)
18 1l3k_A Heterogeneous nuclear r 100.0 2.6E-29 9E-34 227.3 16.1 174 292-514 11-184 (196)
19 3nmr_A Cugbp ELAV-like family 100.0 7.2E-29 2.5E-33 220.1 16.4 165 173-372 2-175 (175)
20 3tyt_A Heterogeneous nuclear r 100.0 1.8E-28 6.2E-33 221.6 17.8 185 173-371 3-204 (205)
21 3nmr_A Cugbp ELAV-like family 100.0 2.4E-28 8E-33 216.8 17.4 165 294-511 3-175 (175)
22 2cjk_A Nuclear polyadenylated 100.0 3.2E-29 1.1E-33 220.5 11.7 164 294-513 3-166 (167)
23 2adc_A Polypyrimidine tract-bi 100.0 1.2E-27 4.2E-32 221.3 20.7 187 171-374 31-228 (229)
24 3pgw_A U1-A; protein-RNA compl 100.0 1.3E-27 4.4E-32 229.0 21.4 188 171-372 6-281 (282)
25 3sde_A Paraspeckle component 1 100.0 4.9E-28 1.7E-32 228.6 18.0 156 171-374 19-179 (261)
26 3pgw_A U1-A; protein-RNA compl 100.0 6.1E-27 2.1E-31 224.3 21.8 199 292-511 7-281 (282)
27 2g4b_A Splicing factor U2AF 65 99.9 2.6E-27 8.8E-32 209.4 16.5 158 294-511 4-172 (172)
28 2ghp_A U4/U6 snRNA-associated 99.9 1.8E-27 6.2E-32 229.2 16.4 172 173-374 116-291 (292)
29 1qm9_A Polypyrimidine tract-bi 99.9 2.3E-27 7.9E-32 214.8 15.0 183 174-374 3-197 (198)
30 1fje_B Nucleolin RBD12, protei 99.9 1E-27 3.4E-32 212.7 12.0 165 291-513 10-174 (175)
31 2yh0_A Splicing factor U2AF 65 99.9 1.1E-27 3.7E-32 217.0 12.3 177 294-513 4-194 (198)
32 3smz_A Protein raver-1, ribonu 99.9 2.1E-27 7.1E-32 227.8 14.1 171 172-375 93-265 (284)
33 3tyt_A Heterogeneous nuclear r 99.9 1.5E-26 5.2E-31 209.0 17.2 183 294-503 4-193 (205)
34 2adc_A Polypyrimidine tract-bi 99.9 3.2E-26 1.1E-30 211.8 17.8 193 292-513 32-228 (229)
35 1qm9_A Polypyrimidine tract-bi 99.9 3.4E-26 1.2E-30 207.1 13.0 191 294-513 3-197 (198)
36 3sde_A Paraspeckle component 1 99.9 2E-25 7E-30 210.6 16.9 156 292-513 20-179 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-21 4E-26 170.1 14.9 141 219-375 10-151 (158)
38 3v4m_A Splicing factor U2AF 65 99.9 9.6E-22 3.3E-26 156.5 11.3 102 418-520 3-104 (105)
39 4fxv_A ELAV-like protein 1; RN 99.8 3.1E-20 1.1E-24 146.6 11.7 80 294-373 19-98 (99)
40 2i2y_A Fusion protein consists 99.8 2.9E-20 9.9E-25 159.6 12.3 136 220-374 11-148 (150)
41 3ue2_A Poly(U)-binding-splicin 99.8 6.6E-20 2.3E-24 148.5 7.7 100 418-522 18-118 (118)
42 2lxi_A RNA-binding protein 10; 99.8 8.4E-20 2.9E-24 141.8 7.4 82 295-376 2-85 (91)
43 3s8s_A Histone-lysine N-methyl 99.8 5.4E-19 1.9E-23 142.2 12.1 82 292-373 4-85 (110)
44 2lkz_A RNA-binding protein 5; 99.8 4.3E-19 1.5E-23 138.2 9.2 81 293-373 8-94 (95)
45 3s6e_A RNA-binding protein 39; 99.8 5.1E-19 1.7E-23 142.2 9.1 94 417-517 4-97 (114)
46 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.8E-18 6E-23 133.7 11.2 82 293-374 5-86 (87)
47 2kn4_A Immunoglobulin G-bindin 99.8 2.6E-18 8.9E-23 148.9 13.6 150 323-514 2-151 (158)
48 4f25_A Polyadenylate-binding p 99.8 1.7E-18 6E-23 141.0 11.2 81 293-375 4-84 (115)
49 3md1_A Nuclear and cytoplasmic 99.8 3E-18 1E-22 131.0 11.6 80 295-374 2-81 (83)
50 1x5s_A Cold-inducible RNA-bind 99.8 4.3E-18 1.5E-22 135.8 11.5 86 291-376 9-94 (102)
51 2cqc_A Arginine/serine-rich sp 99.8 5.2E-18 1.8E-22 133.4 11.8 83 291-373 12-94 (95)
52 2dnz_A Probable RNA-binding pr 99.8 4.6E-18 1.6E-22 133.7 11.4 84 292-375 3-86 (95)
53 3p5t_L Cleavage and polyadenyl 99.8 7.8E-19 2.7E-23 136.4 6.7 81 295-375 2-84 (90)
54 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.9E-18 1.3E-22 136.0 10.9 86 291-376 9-94 (102)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.8E-18 1.3E-22 131.1 10.4 81 292-372 5-85 (85)
56 2dgo_A Cytotoxic granule-assoc 99.8 9.2E-18 3.2E-22 137.0 13.2 87 291-377 12-98 (115)
57 1whw_A Hypothetical protein ri 99.8 5.9E-18 2E-22 134.1 11.6 85 292-376 6-90 (99)
58 2dnm_A SRP46 splicing factor; 99.8 4.5E-18 1.5E-22 135.8 10.8 85 291-375 10-94 (103)
59 2cq0_A Eukaryotic translation 99.8 5.4E-18 1.8E-22 135.4 11.1 86 291-376 12-97 (103)
60 2x1f_A MRNA 3'-END-processing 99.8 5.8E-18 2E-22 133.3 11.1 82 294-375 2-83 (96)
61 2dgs_A DAZ-associated protein 99.7 7.8E-18 2.7E-22 133.4 11.5 84 292-376 8-91 (99)
62 2cpz_A CUG triplet repeat RNA- 99.7 1.1E-17 3.6E-22 136.6 12.6 85 292-376 23-107 (115)
63 2e5h_A Zinc finger CCHC-type a 99.7 6.2E-18 2.1E-22 132.6 10.7 82 291-372 13-94 (94)
64 2pe8_A Splicing factor 45; RRM 99.7 3.8E-18 1.3E-22 135.5 9.5 99 417-522 5-103 (105)
65 1x5u_A Splicing factor 3B subu 99.7 7.3E-18 2.5E-22 135.2 11.2 86 291-376 12-97 (105)
66 2lea_A Serine/arginine-rich sp 99.7 8.6E-19 2.9E-23 146.9 5.8 122 224-375 6-128 (135)
67 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.8E-18 2.3E-22 147.1 11.7 141 227-376 11-154 (165)
68 2do4_A Squamous cell carcinoma 99.7 1.9E-17 6.3E-22 131.5 13.1 83 292-375 15-97 (100)
69 2jrs_A RNA-binding protein 39; 99.7 7.3E-18 2.5E-22 135.4 10.8 84 291-374 23-106 (108)
70 1x5t_A Splicing factor 3B subu 99.7 5.4E-18 1.9E-22 133.5 9.9 84 293-376 4-88 (96)
71 2dgp_A Bruno-like 4, RNA bindi 99.7 8.8E-18 3E-22 135.0 11.2 85 291-375 10-97 (106)
72 2div_A TRNA selenocysteine ass 99.7 6.5E-18 2.2E-22 133.9 10.3 84 291-374 6-94 (99)
73 1x4h_A RNA-binding protein 28; 99.7 1.5E-17 5.1E-22 134.8 12.4 87 291-377 12-104 (111)
74 2la6_A RNA-binding protein FUS 99.7 1.2E-17 4.2E-22 132.2 11.5 82 291-372 10-99 (99)
75 1p27_B RNA-binding protein 8A; 99.7 1.2E-17 4E-22 134.2 10.8 82 293-374 22-103 (106)
76 3ns6_A Eukaryotic translation 99.7 2.1E-18 7.1E-23 136.7 6.3 80 294-373 6-92 (100)
77 2cpf_A RNA binding motif prote 99.7 9.8E-18 3.4E-22 132.6 10.1 84 292-375 3-89 (98)
78 4f25_A Polyadenylate-binding p 99.7 3.9E-18 1.3E-22 138.9 7.8 104 174-310 5-113 (115)
79 2cph_A RNA binding motif prote 99.7 2.1E-17 7.3E-22 133.0 12.0 86 291-376 12-99 (107)
80 2ywk_A Putative RNA-binding pr 99.7 1.7E-17 5.7E-22 130.5 10.8 81 292-373 14-94 (95)
81 3ulh_A THO complex subunit 4; 99.7 2.5E-17 8.4E-22 132.6 11.7 81 291-372 26-106 (107)
82 2wbr_A GW182, gawky, LD47780P; 99.7 1.8E-17 6.3E-22 123.5 10.0 73 294-372 7-79 (89)
83 2dgx_A KIAA0430 protein; RRM d 99.7 2.6E-17 8.8E-22 129.4 11.5 81 292-375 7-91 (96)
84 2dng_A Eukaryotic translation 99.7 2.5E-17 8.5E-22 131.5 11.4 84 291-376 12-95 (103)
85 2fy1_A RNA-binding motif prote 99.7 1.6E-17 5.5E-22 135.3 10.4 83 292-375 5-87 (116)
86 1oo0_B CG8781-PA, drosophila Y 99.7 2.1E-17 7.1E-22 133.7 10.9 83 293-375 25-107 (110)
87 2dnh_A Bruno-like 5, RNA bindi 99.7 4.3E-17 1.5E-21 130.6 12.7 84 292-376 13-99 (105)
88 2d9p_A Polyadenylate-binding p 99.7 2.7E-17 9.1E-22 131.3 11.3 84 291-376 12-95 (103)
89 2i2y_A Fusion protein consists 99.7 2.6E-17 9E-22 141.1 12.0 139 332-513 9-148 (150)
90 2kxn_B Transformer-2 protein h 99.7 1.2E-17 4E-22 138.7 9.4 84 291-374 43-126 (129)
91 2cpe_A RNA-binding protein EWS 99.7 2.8E-17 9.5E-22 133.6 11.5 86 291-376 12-105 (113)
92 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.2E-17 2.5E-21 128.8 13.7 84 291-376 12-95 (103)
93 4a8x_A RNA-binding protein wit 99.7 1.8E-17 6.3E-22 128.2 9.7 81 294-374 4-85 (88)
94 2dh8_A DAZ-associated protein 99.7 2.1E-17 7E-22 132.5 10.3 86 291-377 13-98 (105)
95 3ucg_A Polyadenylate-binding p 99.7 2.7E-17 9.3E-22 127.5 10.7 79 295-374 7-85 (89)
96 2khc_A Testis-specific RNP-typ 99.7 2.4E-17 8.2E-22 135.2 10.9 81 291-371 37-117 (118)
97 1sjq_A Polypyrimidine tract-bi 99.7 1.8E-17 6.2E-22 130.1 9.5 81 291-377 13-95 (105)
98 2cqp_A RNA-binding protein 12; 99.7 1.5E-17 5.2E-22 131.5 9.2 84 291-374 12-95 (98)
99 3s7r_A Heterogeneous nuclear r 99.7 3.7E-17 1.3E-21 126.1 11.1 79 292-371 9-87 (87)
100 2ek1_A RNA-binding protein 12; 99.7 7.7E-18 2.6E-22 132.4 7.3 82 292-373 13-94 (95)
101 2dhg_A TRNA selenocysteine ass 99.7 2E-17 6.8E-22 132.4 9.7 84 292-376 7-92 (104)
102 1wi8_A EIF-4B, eukaryotic tran 99.7 2.7E-17 9.1E-22 131.5 10.4 83 292-376 13-96 (104)
103 2dgv_A HnRNP M, heterogeneous 99.7 4E-17 1.4E-21 127.4 11.2 82 292-375 6-87 (92)
104 2cq3_A RNA-binding protein 9; 99.7 8.6E-17 2.9E-21 128.4 13.2 84 291-376 12-95 (103)
105 3n9u_C Cleavage and polyadenyl 99.7 2.5E-17 8.5E-22 141.2 10.7 81 293-373 54-136 (156)
106 2cqg_A TDP-43, TAR DNA-binding 99.7 1E-16 3.6E-21 127.9 13.2 85 291-377 12-96 (103)
107 3r27_A HnRNP L, heterogeneous 99.7 5.1E-17 1.7E-21 126.2 10.9 77 292-374 19-97 (100)
108 1u6f_A Tcubp1, RNA-binding pro 99.7 1.2E-16 4E-21 135.2 14.1 85 291-375 39-123 (139)
109 2do0_A HnRNP M, heterogeneous 99.7 1.2E-16 4E-21 130.2 13.3 83 291-374 12-94 (114)
110 2dgw_A Probable RNA-binding pr 99.7 8.1E-17 2.8E-21 125.3 11.8 81 292-375 8-88 (91)
111 2kt5_A RNA and export factor-b 99.7 1.3E-16 4.6E-21 131.9 13.7 85 291-376 32-116 (124)
112 2mss_A Protein (musashi1); RNA 99.7 1.1E-17 3.9E-22 125.0 6.5 75 296-371 1-75 (75)
113 2cqd_A RNA-binding region cont 99.7 5.9E-17 2E-21 132.4 11.3 83 291-374 14-96 (116)
114 1s79_A Lupus LA protein; RRM, 99.7 1.7E-17 5.8E-22 131.6 7.8 77 294-372 11-87 (103)
115 3ex7_B RNA-binding protein 8A; 99.7 3.3E-17 1.1E-21 136.1 9.9 84 293-376 21-104 (126)
116 1p1t_A Cleavage stimulation fa 99.7 2.5E-17 8.6E-22 131.8 8.7 81 294-374 8-88 (104)
117 2rs2_A Musashi-1, RNA-binding 99.7 3.8E-17 1.3E-21 131.6 9.5 86 291-377 22-107 (109)
118 3pgw_S U1-70K; protein-RNA com 99.7 4.6E-18 1.6E-22 170.6 5.1 83 292-374 100-182 (437)
119 3lqv_A PRE-mRNA branch site pr 99.7 4.3E-17 1.5E-21 133.0 9.5 79 292-373 6-84 (115)
120 1x4e_A RNA binding motif, sing 99.7 8.4E-18 2.9E-22 129.1 4.7 81 292-372 3-83 (85)
121 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.2E-16 4.2E-21 137.9 12.6 85 292-376 37-121 (156)
122 2err_A Ataxin-2-binding protei 99.7 6.6E-17 2.3E-21 130.2 9.9 82 291-374 26-107 (109)
123 2cq4_A RNA binding motif prote 99.7 4.6E-17 1.6E-21 132.6 8.8 79 294-373 25-103 (114)
124 2cpi_A CCR4-NOT transcription 99.7 5.7E-17 1.9E-21 131.1 9.3 84 292-375 13-102 (111)
125 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1E-16 3.5E-21 135.8 11.2 82 290-371 59-140 (140)
126 2m2b_A RNA-binding protein 10; 99.7 2.7E-17 9.2E-22 137.3 7.4 82 292-374 21-108 (131)
127 2ki2_A SS-DNA binding protein 99.7 1.1E-17 3.8E-22 130.0 4.5 80 295-375 2-81 (90)
128 2nlw_A Eukaryotic translation 99.7 1E-16 3.5E-21 128.1 10.0 80 293-374 14-100 (105)
129 1x4b_A Heterogeneous nuclear r 99.7 6.6E-17 2.2E-21 132.1 9.1 82 294-376 27-108 (116)
130 1wez_A HnRNP H', FTP-3, hetero 99.7 5.6E-17 1.9E-21 128.6 8.3 81 291-374 12-92 (102)
131 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.6E-17 8.9E-22 123.8 6.0 76 295-371 1-76 (77)
132 1x4a_A Splicing factor, argini 99.7 3.3E-16 1.1E-20 126.3 12.8 82 291-375 19-100 (109)
133 2db1_A Heterogeneous nuclear r 99.7 9.7E-17 3.3E-21 131.1 9.7 80 292-373 15-97 (118)
134 2cq1_A PTB-like protein L; RRM 99.7 2E-16 7E-21 124.5 11.2 79 292-376 13-93 (101)
135 2cpy_A RNA-binding protein 12; 99.7 6.1E-17 2.1E-21 131.6 8.1 81 291-373 12-93 (114)
136 2ad9_A Polypyrimidine tract-bi 99.7 1.7E-16 6E-21 127.9 10.3 80 292-377 29-110 (119)
137 2dis_A Unnamed protein product 99.7 1.2E-16 4E-21 129.0 9.3 83 293-375 7-93 (109)
138 1x5o_A RNA binding motif, sing 99.7 2.1E-16 7.3E-21 128.6 10.9 82 292-374 23-112 (114)
139 1wg5_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 127.3 9.4 82 292-375 13-95 (104)
140 1x4d_A Matrin 3; structural ge 99.7 1E-16 3.6E-21 125.9 8.7 77 292-374 13-92 (102)
141 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.7E-17 9.2E-22 130.4 5.3 81 292-374 17-98 (100)
142 1wex_A Hypothetical protein (r 99.7 2.8E-16 9.5E-21 124.5 10.6 78 292-375 13-92 (104)
143 2jwn_A Embryonic polyadenylate 99.7 1.6E-16 5.5E-21 131.5 9.6 80 294-374 36-115 (124)
144 2hgl_A HNRPF protein, heteroge 99.7 9.2E-17 3.2E-21 133.7 8.0 80 292-373 42-124 (136)
145 1x4c_A Splicing factor, argini 99.7 4.8E-16 1.6E-20 125.0 11.8 77 292-375 13-94 (108)
146 2a3j_A U1 small nuclear ribonu 99.7 2.3E-16 7.9E-21 129.7 10.0 80 292-374 27-110 (127)
147 2jvr_A Nucleolar protein 3; RN 99.7 2E-16 6.7E-21 126.7 9.3 79 292-374 26-105 (111)
148 1iqt_A AUF1, heterogeneous nuc 99.7 5.3E-17 1.8E-21 121.4 5.6 75 296-371 1-75 (75)
149 2dnq_A RNA-binding protein 4B; 99.7 4E-16 1.4E-20 121.0 10.5 77 292-376 6-82 (90)
150 1wel_A RNA-binding protein 12; 99.7 5.2E-17 1.8E-21 134.2 5.4 82 291-373 22-103 (124)
151 2fc9_A NCL protein; structure 99.7 3.7E-16 1.3E-20 124.2 10.1 81 291-375 12-92 (101)
152 2dnn_A RNA-binding protein 12; 99.7 1.8E-16 6.1E-21 126.7 8.0 76 294-372 16-91 (109)
153 2krb_A Eukaryotic translation 99.7 6E-17 2E-21 123.0 5.0 72 295-368 2-80 (81)
154 2fc8_A NCL protein; structure 99.7 5.5E-16 1.9E-20 123.4 10.8 82 291-375 12-93 (102)
155 2dgu_A Heterogeneous nuclear r 99.7 7.4E-16 2.5E-20 122.8 11.4 78 291-376 8-85 (103)
156 1fj7_A Nucleolin RBD1, protein 99.7 4.8E-17 1.6E-21 129.3 4.3 82 292-375 15-96 (101)
157 2wbr_A GW182, gawky, LD47780P; 99.7 5.4E-16 1.9E-20 115.6 9.6 72 174-257 7-79 (89)
158 1why_A Hypothetical protein ri 99.6 5.6E-16 1.9E-20 122.1 10.0 78 292-375 15-94 (97)
159 3q2s_C Cleavage and polyadenyl 99.6 2.3E-16 7.7E-21 144.5 8.6 81 293-373 67-149 (229)
160 2cpj_A Non-POU domain-containi 99.6 7.1E-16 2.4E-20 122.0 10.3 79 291-375 12-90 (99)
161 2lmi_A GRSF-1, G-rich sequence 99.6 8.4E-17 2.9E-21 129.1 5.0 81 291-373 8-91 (107)
162 2dnp_A RNA-binding protein 14; 99.6 1E-15 3.4E-20 118.8 11.0 77 292-376 7-83 (90)
163 2j8a_A Histone-lysine N-methyl 99.6 3.5E-16 1.2E-20 124.6 8.3 79 295-373 3-95 (136)
164 2la4_A Nuclear and cytoplasmic 99.6 2.9E-16 9.8E-21 124.8 7.6 75 293-373 26-100 (101)
165 1nu4_A U1A RNA binding domain; 99.6 2.6E-16 9E-21 124.0 7.3 80 292-374 6-89 (97)
166 2hgn_A Heterogeneous nuclear r 99.6 5.9E-17 2E-21 135.3 3.6 81 292-375 44-124 (139)
167 2e5j_A Methenyltetrahydrofolat 99.6 9.7E-16 3.3E-20 120.7 10.4 79 292-375 17-95 (97)
168 2dgt_A RNA-binding protein 30; 99.6 1.8E-15 6.2E-20 117.8 11.8 76 292-375 8-83 (92)
169 1x4g_A Nucleolysin TIAR; struc 99.6 1E-15 3.6E-20 123.3 10.8 79 292-376 23-101 (109)
170 2ytc_A PRE-mRNA-splicing facto 99.6 7.5E-16 2.5E-20 118.2 9.5 75 292-372 10-85 (85)
171 2hvz_A Splicing factor, argini 99.6 4.9E-16 1.7E-20 123.4 8.7 76 295-375 1-76 (101)
172 2jvo_A Nucleolar protein 3; nu 99.6 8.5E-16 2.9E-20 123.2 10.0 77 291-375 28-104 (108)
173 2cpx_A Hypothetical protein FL 99.6 1.7E-16 5.8E-21 129.5 5.8 85 292-376 23-107 (115)
174 2xnq_A Nuclear polyadenylated 99.6 1.9E-15 6.5E-20 118.7 11.3 75 292-374 20-95 (97)
175 2dha_A FLJ20171 protein; RRM d 99.6 3.3E-16 1.1E-20 127.9 7.1 79 293-373 22-104 (123)
176 1fjc_A Nucleolin RBD2, protein 99.6 4.6E-16 1.6E-20 122.3 7.5 79 292-375 14-92 (96)
177 2f3j_A RNA and export factor b 99.6 7.5E-16 2.6E-20 135.1 9.5 82 292-374 86-167 (177)
178 1x4f_A Matrin 3; structural ge 99.6 3.6E-16 1.2E-20 124.6 6.2 79 291-375 22-103 (112)
179 2hvz_A Splicing factor, argini 99.6 6.9E-16 2.4E-20 122.6 7.8 74 175-260 1-76 (101)
180 2cqh_A IGF-II mRNA-binding pro 99.6 1.1E-15 3.9E-20 119.3 8.8 78 292-376 6-85 (93)
181 2xs2_A Deleted in azoospermia- 99.6 5.6E-16 1.9E-20 123.3 7.0 79 294-375 9-87 (102)
182 1whx_A Hypothetical protein ri 99.6 9.8E-16 3.3E-20 123.6 8.4 77 294-376 10-86 (111)
183 2lxi_A RNA-binding protein 10; 99.6 6.3E-16 2.1E-20 119.9 6.9 80 174-259 1-83 (91)
184 1sjq_A Polypyrimidine tract-bi 99.6 1.5E-15 5E-20 119.2 8.9 76 172-259 14-92 (105)
185 2lcw_A RNA-binding protein FUS 99.4 4.2E-17 1.4E-21 133.2 0.0 82 293-374 6-95 (116)
186 2cpd_A Apobec-1 stimulating pr 99.6 6.1E-15 2.1E-19 116.6 12.5 76 292-375 13-90 (99)
187 2diu_A KIAA0430 protein; struc 99.6 2E-15 6.9E-20 113.5 8.6 73 294-376 8-86 (96)
188 2hgm_A HNRPF protein, heteroge 99.6 6.7E-16 2.3E-20 126.2 6.5 79 292-373 40-120 (126)
189 2e44_A Insulin-like growth fac 99.6 3.1E-15 1.1E-19 117.5 10.0 78 293-374 14-92 (96)
190 1wf1_A RNA-binding protein RAL 99.6 7.7E-15 2.6E-19 118.4 12.6 74 293-374 26-100 (110)
191 3r27_A HnRNP L, heterogeneous 99.6 2.1E-15 7.3E-20 117.0 8.3 76 172-259 19-97 (100)
192 3egn_A RNA-binding protein 40; 99.6 9.2E-16 3.1E-20 130.2 6.8 81 292-375 43-131 (143)
193 2kvi_A Nuclear polyadenylated 99.6 1.9E-15 6.5E-20 118.7 8.0 76 292-375 8-84 (96)
194 3zzy_A Polypyrimidine tract-bi 99.6 4.9E-15 1.7E-19 120.8 10.6 77 294-375 28-107 (130)
195 2cq2_A Hypothetical protein LO 99.6 2.8E-15 9.4E-20 119.4 8.9 77 292-374 23-106 (114)
196 2pe8_A Splicing factor 45; RRM 99.6 7E-15 2.4E-19 116.6 11.2 82 292-373 6-93 (105)
197 3lqv_A PRE-mRNA branch site pr 99.6 8.5E-16 2.9E-20 125.2 5.9 99 173-320 7-109 (115)
198 1sjr_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 125.4 10.7 78 294-375 46-125 (164)
199 1wg1_A KIAA1579 protein, homol 99.6 3E-15 1E-19 115.4 8.4 76 293-375 4-79 (88)
200 2e5g_A U6 snRNA-specific termi 99.6 3.7E-15 1.3E-19 116.6 9.0 78 292-375 6-83 (94)
201 4fxv_A ELAV-like protein 1; RN 99.6 2.8E-15 9.6E-20 118.0 8.1 79 418-512 20-98 (99)
202 1fj7_A Nucleolin RBD1, protein 99.6 1E-14 3.5E-19 115.8 11.3 81 172-259 15-95 (101)
203 1jmt_A Splicing factor U2AF 35 99.6 5.4E-15 1.8E-19 117.3 9.2 87 421-511 2-104 (104)
204 1x5p_A Negative elongation fac 99.6 1.5E-14 5E-19 113.8 11.6 77 292-376 13-89 (97)
205 2dit_A HIV TAT specific factor 99.6 1.4E-14 4.9E-19 117.1 11.5 97 415-518 10-108 (112)
206 3pgw_S U1-70K; protein-RNA com 99.6 3.5E-15 1.2E-19 149.6 9.4 66 445-513 117-182 (437)
207 2e5i_A Heterogeneous nuclear r 99.6 1.7E-14 5.7E-19 117.3 11.0 74 296-375 27-103 (124)
208 3beg_B Splicing factor, argini 99.6 3.6E-15 1.2E-19 121.2 6.9 74 293-373 15-93 (115)
209 2hzc_A Splicing factor U2AF 65 99.6 1.3E-14 4.6E-19 111.6 9.7 84 172-256 4-87 (87)
210 2cq1_A PTB-like protein L; RRM 99.6 7.8E-15 2.7E-19 115.4 8.4 76 172-259 13-91 (101)
211 3d2w_A TAR DNA-binding protein 99.6 1.2E-14 4.1E-19 112.0 9.1 74 292-374 9-84 (89)
212 1wex_A Hypothetical protein (r 99.6 9E-15 3.1E-19 115.8 8.5 77 172-260 13-92 (104)
213 1x4d_A Matrin 3; structural ge 99.6 3.8E-15 1.3E-19 117.0 6.0 77 172-260 13-93 (102)
214 2cpz_A CUG triplet repeat RNA- 99.6 4.3E-15 1.5E-19 121.0 6.5 85 170-260 21-106 (115)
215 2e5j_A Methenyltetrahydrofolat 99.5 1.4E-14 4.7E-19 114.0 9.2 78 171-259 16-94 (97)
216 2cqi_A Nucleolysin TIAR; RNA r 99.5 3.7E-14 1.3E-18 113.0 11.8 78 170-259 11-93 (103)
217 2dnl_A Cytoplasmic polyadenyla 99.5 7.8E-15 2.7E-19 119.1 7.8 76 292-370 6-84 (114)
218 1x4g_A Nucleolysin TIAR; struc 99.5 3.7E-14 1.3E-18 114.2 11.2 80 169-260 20-100 (109)
219 2jvr_A Nucleolar protein 3; RN 99.5 1.2E-14 4.2E-19 116.2 8.2 74 172-257 26-103 (111)
220 2ytc_A PRE-mRNA-splicing facto 99.5 1.1E-14 3.7E-19 111.6 7.5 74 171-256 9-84 (85)
221 1x4a_A Splicing factor, argini 99.5 2.1E-14 7.3E-19 115.6 9.6 78 171-260 19-100 (109)
222 2la4_A Nuclear and cytoplasmic 99.5 1.1E-14 3.8E-19 115.6 7.6 75 172-258 25-100 (101)
223 2hzc_A Splicing factor U2AF 65 99.5 1.4E-14 4.9E-19 111.5 7.9 71 293-370 5-86 (87)
224 3s8s_A Histone-lysine N-methyl 99.5 1.4E-14 4.8E-19 116.3 8.1 67 445-514 21-87 (110)
225 2lea_A Serine/arginine-rich sp 99.5 2.9E-15 1E-19 125.3 4.2 123 338-514 6-128 (135)
226 2cqc_A Arginine/serine-rich sp 99.5 2.4E-14 8.4E-19 112.2 9.2 75 171-257 12-93 (95)
227 2ad9_A Polypyrimidine tract-bi 99.5 7.6E-15 2.6E-19 118.3 6.1 77 172-260 29-108 (119)
228 2xnq_A Nuclear polyadenylated 99.5 3E-14 1E-18 111.9 9.2 75 170-258 18-94 (97)
229 2a3j_A U1 small nuclear ribonu 99.5 1.2E-14 4E-19 119.5 7.0 78 172-261 27-112 (127)
230 1why_A Hypothetical protein ri 99.5 3.5E-14 1.2E-18 111.7 9.4 76 172-259 15-93 (97)
231 2khc_A Testis-specific RNP-typ 99.5 3.8E-14 1.3E-18 116.0 9.9 75 170-256 36-117 (118)
232 2cpj_A Non-POU domain-containi 99.5 1E-14 3.5E-19 115.2 6.1 77 171-259 12-89 (99)
233 2dgx_A KIAA0430 protein; RRM d 99.5 5.4E-14 1.8E-18 110.3 10.1 75 173-259 8-90 (96)
234 2bz2_A Negative elongation fac 99.5 3.9E-14 1.3E-18 115.9 9.3 76 292-375 37-112 (121)
235 2cpx_A Hypothetical protein FL 99.5 4.7E-14 1.6E-18 114.8 9.8 83 172-260 23-106 (115)
236 1u6f_A Tcubp1, RNA-binding pro 99.5 2.7E-13 9.2E-18 114.4 14.8 79 170-260 38-123 (139)
237 1s79_A Lupus LA protein; RRM, 99.5 1.9E-14 6.4E-19 114.0 7.1 76 172-259 9-89 (103)
238 2cpd_A Apobec-1 stimulating pr 99.5 8E-14 2.7E-18 110.1 10.8 77 170-260 11-90 (99)
239 2cq3_A RNA-binding protein 9; 99.5 5.7E-14 2E-18 111.8 9.9 79 170-260 11-94 (103)
240 2mss_A Protein (musashi1); RNA 99.5 6.3E-15 2.2E-19 109.9 4.0 75 176-256 1-75 (75)
241 2dnp_A RNA-binding protein 14; 99.5 7.8E-14 2.7E-18 108.0 10.1 75 171-259 6-81 (90)
242 2dnq_A RNA-binding protein 4B; 99.5 5.1E-14 1.7E-18 109.0 8.9 75 172-260 6-81 (90)
243 2cpe_A RNA-binding protein EWS 99.5 1.1E-14 3.9E-19 118.1 5.4 91 170-260 11-104 (113)
244 2jvo_A Nucleolar protein 3; nu 99.5 2.8E-14 9.7E-19 114.3 7.5 76 170-259 27-103 (108)
245 1x4c_A Splicing factor, argini 99.5 7.6E-14 2.6E-18 112.0 10.0 76 172-260 13-94 (108)
246 2jwn_A Embryonic polyadenylate 99.5 1.6E-14 5.5E-19 119.3 6.2 85 169-259 31-115 (124)
247 1whx_A Hypothetical protein ri 99.5 2.1E-14 7.1E-19 115.8 6.6 76 171-258 7-83 (111)
248 2dgo_A Cytotoxic granule-assoc 99.5 8.6E-14 2.9E-18 113.2 10.4 80 170-261 11-97 (115)
249 2err_A Ataxin-2-binding protei 99.5 1.6E-14 5.5E-19 116.1 5.8 82 169-258 24-106 (109)
250 2cpf_A RNA binding motif prote 99.5 5.1E-14 1.7E-18 111.0 8.5 82 173-260 4-89 (98)
251 3v4m_A Splicing factor U2AF 65 99.5 6.2E-14 2.1E-18 111.2 9.0 81 293-373 4-96 (105)
252 2rs2_A Musashi-1, RNA-binding 99.5 5.4E-14 1.8E-18 113.0 8.7 79 169-259 20-104 (109)
253 2cpi_A CCR4-NOT transcription 99.5 1.6E-13 5.4E-18 110.7 11.4 86 416-514 14-102 (111)
254 1wf0_A TDP-43, TAR DNA-binding 99.5 1.8E-14 6E-19 111.2 5.6 77 293-376 4-80 (88)
255 3s7r_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 109.2 7.2 75 170-256 7-87 (87)
256 2lkz_A RNA-binding protein 5; 99.5 3.6E-14 1.2E-18 110.3 7.3 79 418-512 10-94 (95)
257 1x4f_A Matrin 3; structural ge 99.5 1.2E-14 4.2E-19 115.7 4.7 78 171-260 22-103 (112)
258 2cqp_A RNA-binding protein 12; 99.5 2E-14 6.9E-19 113.4 5.9 81 172-258 13-94 (98)
259 2dgu_A Heterogeneous nuclear r 99.5 2E-13 6.7E-18 108.6 11.7 75 172-260 9-84 (103)
260 3bs9_A Nucleolysin TIA-1 isofo 99.5 4.3E-14 1.5E-18 108.8 7.5 66 445-513 21-86 (87)
261 2dnz_A Probable RNA-binding pr 99.5 8E-14 2.7E-18 109.2 9.1 67 445-514 20-86 (95)
262 1x4h_A RNA-binding protein 28; 99.5 1.2E-13 4.3E-18 111.5 10.4 78 171-260 12-102 (111)
263 2ywk_A Putative RNA-binding pr 99.5 5E-14 1.7E-18 110.4 7.8 76 170-257 12-93 (95)
264 2do4_A Squamous cell carcinoma 99.5 9.7E-14 3.3E-18 109.8 9.3 77 171-259 14-96 (100)
265 2fc9_A NCL protein; structure 99.5 2.1E-14 7.1E-19 113.9 5.4 79 171-259 12-91 (101)
266 2e5h_A Zinc finger CCHC-type a 99.5 1.3E-13 4.5E-18 107.7 9.9 64 445-511 31-94 (94)
267 1whw_A Hypothetical protein ri 99.5 1.1E-13 3.8E-18 109.3 9.5 68 445-515 23-90 (99)
268 3mdf_A Peptidyl-prolyl CIS-tra 99.5 5.8E-14 2E-18 107.5 7.6 63 445-510 22-84 (85)
269 2f3j_A RNA and export factor b 99.5 2.2E-13 7.6E-18 119.3 12.2 75 172-258 86-166 (177)
270 2dnh_A Bruno-like 5, RNA bindi 99.5 6.1E-14 2.1E-18 112.1 7.9 78 171-260 12-98 (105)
271 2ek1_A RNA-binding protein 12; 99.5 2.1E-14 7.1E-19 112.6 4.8 79 173-257 14-93 (95)
272 1wel_A RNA-binding protein 12; 99.5 1.2E-14 4.1E-19 119.9 3.6 82 171-258 22-103 (124)
273 2cq2_A Hypothetical protein LO 99.5 7.5E-14 2.6E-18 111.1 8.0 77 172-260 23-107 (114)
274 2cq4_A RNA binding motif prote 99.5 6.8E-14 2.3E-18 113.6 8.0 76 170-257 21-102 (114)
275 2dgt_A RNA-binding protein 30; 99.5 1.3E-13 4.5E-18 107.2 9.2 76 171-260 7-83 (92)
276 2fy1_A RNA-binding motif prote 99.5 9.8E-14 3.4E-18 112.8 8.8 80 172-260 5-87 (116)
277 1fjc_A Nucleolin RBD2, protein 99.5 4.2E-14 1.4E-18 111.0 6.3 79 170-259 12-91 (96)
278 1x5s_A Cold-inducible RNA-bind 99.5 8.9E-14 3E-18 110.5 8.2 67 445-514 27-93 (102)
279 2voo_A Lupus LA protein; RNA-b 99.5 1.2E-13 4.2E-18 122.8 10.0 78 295-374 110-187 (193)
280 4a8x_A RNA-binding protein wit 99.5 9.3E-14 3.2E-18 107.1 8.0 73 173-257 3-83 (88)
281 2x1f_A MRNA 3'-END-processing 99.5 1.4E-13 4.8E-18 108.0 9.0 68 445-515 17-84 (96)
282 3ucg_A Polyadenylate-binding p 99.5 7.1E-14 2.4E-18 108.1 7.1 81 172-258 4-84 (89)
283 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.2E-13 4E-18 109.8 8.4 68 445-515 27-94 (102)
284 1x5p_A Negative elongation fac 99.5 2.2E-13 7.6E-18 107.0 9.9 74 172-259 13-87 (97)
285 2dgs_A DAZ-associated protein 99.5 2.1E-13 7.2E-18 107.7 9.8 66 445-514 25-90 (99)
286 2dnm_A SRP46 splicing factor; 99.5 1.2E-13 4E-18 110.0 8.4 67 445-514 28-94 (103)
287 2cqh_A IGF-II mRNA-binding pro 99.5 3.8E-14 1.3E-18 110.5 5.4 75 173-259 7-83 (93)
288 1iqt_A AUF1, heterogeneous nuc 99.5 1.8E-14 6.1E-19 107.5 3.3 74 176-255 1-74 (75)
289 1x5u_A Splicing factor 3B subu 99.5 1.7E-13 5.7E-18 109.6 9.2 67 445-514 30-96 (105)
290 3md1_A Nuclear and cytoplasmic 99.5 1.2E-13 4.2E-18 105.2 8.0 66 445-513 16-81 (83)
291 2cpy_A RNA-binding protein 12; 99.5 1.7E-14 5.8E-19 117.1 3.3 82 171-259 12-94 (114)
292 2cph_A RNA binding motif prote 99.5 3.9E-13 1.3E-17 107.8 11.3 70 445-517 30-101 (107)
293 3ns6_A Eukaryotic translation 99.5 1E-13 3.5E-18 109.5 7.7 72 438-512 20-92 (100)
294 2nlw_A Eukaryotic translation 99.5 1.1E-13 3.9E-18 110.3 8.0 77 172-260 13-101 (105)
295 2dgv_A HnRNP M, heterogeneous 99.5 6.2E-14 2.1E-18 109.1 6.3 80 172-259 6-86 (92)
296 2dit_A HIV TAT specific factor 99.5 4E-13 1.4E-17 108.5 11.2 82 291-376 12-104 (112)
297 3ue2_A Poly(U)-binding-splicin 99.5 1.6E-13 5.6E-18 110.8 8.8 80 293-372 19-107 (118)
298 2cq0_A Eukaryotic translation 99.5 1.3E-13 4.3E-18 109.8 7.8 67 445-514 30-96 (103)
299 1x4b_A Heterogeneous nuclear r 99.5 1.7E-13 5.9E-18 111.6 8.8 85 170-260 23-107 (116)
300 2db1_A Heterogeneous nuclear r 99.5 4.5E-14 1.5E-18 115.2 5.3 80 171-257 14-96 (118)
301 2kxn_B Transformer-2 protein h 99.5 1.5E-13 5.1E-18 113.8 8.4 67 445-514 61-127 (129)
302 2m2b_A RNA-binding protein 10; 99.5 3.3E-14 1.1E-18 118.5 4.5 86 171-261 20-110 (131)
303 2diu_A KIAA0430 protein; struc 99.5 2E-13 6.7E-18 102.7 8.1 70 176-261 11-86 (96)
304 1rk8_A CG8781-PA, CG8781-PA pr 99.4 9.1E-14 3.1E-18 120.8 7.3 66 445-513 87-152 (165)
305 1nu4_A U1A RNA binding domain; 99.4 1.3E-13 4.3E-18 108.5 7.4 77 172-260 6-90 (97)
306 2dhg_A TRNA selenocysteine ass 99.4 2E-13 7E-18 108.8 8.7 77 172-260 7-91 (104)
307 1wf1_A RNA-binding protein RAL 99.4 1.7E-13 5.7E-18 110.5 8.2 74 172-259 25-100 (110)
308 2la6_A RNA-binding protein FUS 99.4 2E-13 6.8E-18 107.8 8.4 64 445-511 28-99 (99)
309 2dh8_A DAZ-associated protein 99.4 2E-14 6.8E-19 115.0 2.5 78 171-260 13-96 (105)
310 2cqg_A TDP-43, TAR DNA-binding 99.4 3.9E-13 1.3E-17 106.9 10.1 84 170-260 11-94 (103)
311 3u1l_A PRE-mRNA-splicing facto 99.4 1.2E-13 4E-18 125.4 7.9 77 292-374 132-229 (240)
312 2fc8_A NCL protein; structure 99.4 3.9E-14 1.3E-18 112.6 4.2 81 171-260 12-93 (102)
313 1wg1_A KIAA1579 protein, homol 99.4 6.6E-14 2.2E-18 107.8 5.2 73 173-258 4-77 (88)
314 2dnn_A RNA-binding protein 12; 99.4 1.3E-13 4.5E-18 110.0 7.0 73 173-258 15-92 (109)
315 2e5g_A U6 snRNA-specific termi 99.4 2E-13 6.7E-18 106.6 8.0 76 172-259 6-82 (94)
316 2do0_A HnRNP M, heterogeneous 99.4 3.1E-13 1.1E-17 109.7 9.5 77 171-259 12-94 (114)
317 3ulh_A THO complex subunit 4; 99.4 1.9E-13 6.5E-18 109.6 7.8 63 445-511 44-106 (107)
318 2jrs_A RNA-binding protein 39; 99.4 1.9E-13 6.5E-18 109.5 7.7 66 445-513 41-106 (108)
319 2div_A TRNA selenocysteine ass 99.4 8E-14 2.7E-18 110.1 5.4 69 445-516 24-97 (99)
320 2dis_A Unnamed protein product 99.4 6.3E-13 2.2E-17 107.0 10.6 77 173-260 7-93 (109)
321 1x5t_A Splicing factor 3B subu 99.4 1.5E-13 5E-18 107.9 6.6 68 445-515 20-88 (96)
322 2d9p_A Polyadenylate-binding p 99.4 3.8E-13 1.3E-17 107.0 9.1 65 445-514 30-94 (103)
323 2krb_A Eukaryotic translation 99.4 1.1E-13 3.8E-18 104.7 5.7 67 175-253 2-80 (81)
324 2kvi_A Nuclear polyadenylated 99.4 9.1E-14 3.1E-18 109.0 5.2 75 171-259 7-83 (96)
325 2dgp_A Bruno-like 4, RNA bindi 99.4 3.1E-13 1E-17 108.2 8.2 67 445-514 28-97 (106)
326 2hgl_A HNRPF protein, heteroge 99.4 3.4E-14 1.2E-18 118.1 2.6 80 171-257 41-123 (136)
327 1jmt_A Splicing factor U2AF 35 99.4 8.3E-14 2.8E-18 110.4 4.5 72 299-371 20-103 (104)
328 3p5t_L Cleavage and polyadenyl 99.4 6.3E-14 2.1E-18 108.5 3.6 66 445-513 16-83 (90)
329 1p1t_A Cleavage stimulation fa 99.4 1.1E-13 3.7E-18 110.5 5.1 85 171-261 5-90 (104)
330 3egn_A RNA-binding protein 40; 99.4 2.4E-13 8.2E-18 115.2 7.4 88 172-260 43-131 (143)
331 3dxb_A Thioredoxin N-terminall 99.4 3.6E-13 1.2E-17 123.4 9.1 100 418-522 122-222 (222)
332 1oo0_B CG8781-PA, drosophila Y 99.4 4.3E-13 1.5E-17 108.1 8.5 66 445-513 41-106 (110)
333 1p27_B RNA-binding protein 8A; 99.4 3.1E-13 1.1E-17 108.1 7.5 66 445-513 38-103 (106)
334 1wi8_A EIF-4B, eukaryotic tran 99.4 6.3E-13 2.1E-17 105.9 8.7 65 445-514 30-95 (104)
335 2dng_A Eukaryotic translation 99.4 5.5E-13 1.9E-17 106.0 7.8 66 445-515 30-95 (103)
336 3ex7_B RNA-binding protein 8A; 99.4 5.2E-13 1.8E-17 110.5 7.8 67 445-514 37-103 (126)
337 1sjr_A Polypyrimidine tract-bi 99.4 8.4E-13 2.9E-17 111.8 9.0 75 173-259 45-124 (164)
338 2cqd_A RNA-binding region cont 99.4 1E-12 3.5E-17 107.0 9.1 65 445-513 32-96 (116)
339 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1E-12 3.6E-17 110.9 9.5 63 445-510 78-140 (140)
340 3beg_B Splicing factor, argini 99.4 3.4E-13 1.1E-17 109.5 6.1 73 172-257 14-92 (115)
341 2kt5_A RNA and export factor-b 99.4 1.1E-12 3.6E-17 108.3 9.2 67 445-515 50-116 (124)
342 2lcw_A RNA-binding protein FUS 99.1 3.3E-14 1.1E-18 115.9 0.0 90 171-260 4-96 (116)
343 2dha_A FLJ20171 protein; RRM d 99.4 1.2E-13 4.1E-18 112.6 3.2 82 171-257 20-103 (123)
344 2e5i_A Heterogeneous nuclear r 99.4 1.1E-12 3.7E-17 106.7 8.3 73 175-259 26-102 (124)
345 1h2v_Z 20 kDa nuclear CAP bind 99.4 1.1E-12 3.9E-17 112.8 8.3 67 445-514 54-120 (156)
346 3n9u_C Cleavage and polyadenyl 99.4 8.1E-13 2.8E-17 113.1 7.1 66 445-513 70-137 (156)
347 2j76_E EIF-4B, EIF4B, eukaryot 99.4 7.7E-13 2.6E-17 104.5 6.4 63 446-513 35-98 (100)
348 1x4e_A RNA binding motif, sing 99.4 2.5E-13 8.6E-18 103.9 3.4 64 445-511 20-83 (85)
349 1wg5_A Heterogeneous nuclear r 99.4 1.7E-12 6E-17 103.2 8.3 68 445-517 30-98 (104)
350 2e44_A Insulin-like growth fac 99.3 6.3E-12 2.1E-16 98.5 11.1 78 417-514 15-93 (96)
351 3d2w_A TAR DNA-binding protein 99.3 1.6E-12 5.4E-17 100.0 7.3 76 171-259 8-84 (89)
352 2ki2_A SS-DNA binding protein 99.3 4.5E-13 1.5E-17 103.7 4.1 78 420-514 4-81 (90)
353 2bz2_A Negative elongation fac 99.3 8.7E-13 3E-17 107.8 5.9 74 172-259 37-111 (121)
354 1wez_A HnRNP H', FTP-3, hetero 99.3 1.2E-12 4.2E-17 103.5 6.4 70 445-520 30-99 (102)
355 1uaw_A Mouse-musashi-1; RNP-ty 99.3 1E-12 3.4E-17 98.4 5.5 62 445-510 15-76 (77)
356 3zzy_A Polypyrimidine tract-bi 99.3 2E-12 6.8E-17 105.4 7.5 63 445-515 43-108 (130)
357 2dgw_A Probable RNA-binding pr 99.3 2.3E-12 7.8E-17 99.9 7.5 63 445-513 25-87 (91)
358 3s6e_A RNA-binding protein 39; 99.3 6.9E-12 2.4E-16 100.5 9.5 76 293-372 6-91 (114)
359 1wf0_A TDP-43, TAR DNA-binding 99.3 1.4E-12 4.8E-17 100.4 4.9 75 173-260 4-79 (88)
360 2xs2_A Deleted in azoospermia- 99.3 6.7E-13 2.3E-17 105.4 3.1 74 171-257 6-84 (102)
361 3u1l_A PRE-mRNA-splicing facto 99.3 2.8E-12 9.4E-17 116.4 7.0 77 171-259 131-229 (240)
362 1x5o_A RNA binding motif, sing 99.3 4.2E-12 1.4E-16 103.0 7.4 64 445-512 40-111 (114)
363 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.2E-11 7.5E-16 95.1 10.9 74 295-375 11-91 (100)
364 2hgn_A Heterogeneous nuclear r 99.3 4.4E-13 1.5E-17 111.8 1.3 70 445-520 61-130 (139)
365 2lmi_A GRSF-1, G-rich sequence 99.3 1.7E-12 5.7E-17 103.9 4.2 65 445-514 26-93 (107)
366 2j8a_A Histone-lysine N-methyl 99.3 3.6E-12 1.2E-16 101.6 5.5 66 445-513 21-96 (136)
367 3q2s_C Cleavage and polyadenyl 99.3 2.7E-12 9.1E-17 117.4 5.4 66 445-513 83-150 (229)
368 3tht_A Alkylated DNA repair pr 99.2 1.3E-11 4.4E-16 118.3 8.9 76 291-372 15-97 (345)
369 2dnl_A Cytoplasmic polyadenyla 99.2 1.1E-11 3.8E-16 100.3 7.0 75 172-255 6-84 (114)
370 2voo_A Lupus LA protein; RNA-b 99.2 8.7E-12 3E-16 110.9 6.9 78 171-260 106-188 (193)
371 2hgm_A HNRPF protein, heteroge 99.2 1.4E-11 4.9E-16 100.5 5.5 65 445-515 57-123 (126)
372 2dnr_A Synaptojanin-1; RRM dom 99.1 4.5E-10 1.5E-14 83.7 11.1 61 443-515 28-88 (91)
373 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.1E-11 2.1E-15 92.5 5.8 60 445-514 32-91 (100)
374 3tht_A Alkylated DNA repair pr 99.0 3.1E-10 1.1E-14 108.7 8.1 74 171-256 15-96 (345)
375 1owx_A Lupus LA protein, SS-B, 99.0 8.8E-10 3E-14 88.1 8.0 75 291-371 15-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 1.9E-09 6.6E-14 80.3 7.7 71 295-374 8-86 (91)
377 3dxb_A Thioredoxin N-terminall 98.9 5.6E-09 1.9E-13 95.3 9.6 67 306-372 141-211 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 3.7E-09 1.3E-13 79.1 6.4 57 443-511 37-93 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.8 1.7E-08 5.8E-13 75.5 7.4 70 295-373 16-94 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.6 3.3E-07 1.1E-11 69.8 9.3 74 292-371 19-97 (117)
381 1owx_A Lupus LA protein, SS-B, 98.5 2.8E-07 9.6E-12 73.6 8.6 58 445-511 34-94 (121)
382 2l9w_A U4/U6 snRNA-associated- 98.5 3.9E-07 1.3E-11 69.4 7.3 73 418-512 22-99 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.1 1.5E-05 5.2E-10 60.3 8.5 92 174-307 8-99 (104)
384 1wey_A Calcipressin 1; structu 97.8 4.6E-05 1.6E-09 58.1 6.6 75 293-373 4-83 (104)
385 1wey_A Calcipressin 1; structu 97.6 0.00024 8.2E-09 54.1 8.3 60 445-513 25-84 (104)
386 1whv_A Poly(A)-specific ribonu 97.5 0.00046 1.6E-08 51.6 8.4 54 295-357 17-70 (100)
387 1uw4_A UPF3X; nonsense mediate 97.4 0.00094 3.2E-08 50.0 8.6 67 295-361 2-70 (91)
388 2dhx_A Poly (ADP-ribose) polym 97.3 0.0023 7.9E-08 48.5 9.8 72 294-374 8-84 (104)
389 1wwh_A Nucleoporin 35, nucleop 97.1 0.0022 7.7E-08 50.3 8.2 72 171-255 21-93 (119)
390 1wwh_A Nucleoporin 35, nucleop 96.9 0.0032 1.1E-07 49.4 7.8 72 294-373 24-96 (119)
391 3ctr_A Poly(A)-specific ribonu 96.8 0.0019 6.6E-08 48.4 5.7 53 296-357 8-60 (101)
392 3p3d_A Nucleoporin 53; structu 96.2 0.0058 2E-07 48.6 5.2 67 445-512 21-98 (132)
393 2l08_A Regulator of nonsense t 95.9 0.0079 2.7E-07 45.3 4.3 77 295-371 10-93 (97)
394 1uw4_A UPF3X; nonsense mediate 95.7 0.011 3.9E-07 44.1 4.4 62 175-248 2-72 (91)
395 3p3d_A Nucleoporin 53; structu 95.5 0.015 5.1E-07 46.3 4.7 77 295-373 8-98 (132)
396 1whv_A Poly(A)-specific ribonu 95.1 0.086 2.9E-06 39.4 7.2 58 417-496 13-70 (100)
397 3pq1_A Poly(A) RNA polymerase; 94.7 0.02 6.8E-07 56.7 3.9 54 295-354 54-107 (464)
398 3ctr_A Poly(A)-specific ribonu 94.4 0.083 2.9E-06 39.6 5.8 41 445-496 20-60 (101)
399 2l08_A Regulator of nonsense t 93.8 0.033 1.1E-06 41.9 2.6 71 174-248 9-80 (97)
400 3pq1_A Poly(A) RNA polymerase; 93.4 0.022 7.5E-07 56.4 1.4 60 169-241 48-108 (464)
401 3d45_A Poly(A)-specific ribonu 86.1 1.8 6.1E-05 43.7 8.0 55 294-357 440-494 (507)
402 1jmt_B Splicing factor U2AF 65 69.6 1 3.5E-05 24.9 0.1 17 112-128 6-22 (28)
403 3d45_A Poly(A)-specific ribonu 56.0 28 0.00096 34.9 7.9 42 445-497 454-495 (507)
404 4eyt_A Telomerase associated p 50.8 67 0.0023 23.1 9.4 55 294-356 12-66 (129)
405 2g0c_A ATP-dependent RNA helic 44.6 55 0.0019 22.7 5.9 58 305-371 12-74 (76)
406 4e8u_A Putative uncharacterize 42.9 48 0.0016 27.6 5.8 51 295-348 13-74 (172)
407 3lpe_A Putative transcription 36.4 88 0.003 22.9 6.0 34 457-498 40-73 (92)
408 2g0c_A ATP-dependent RNA helic 34.8 48 0.0016 23.1 4.2 44 456-511 32-75 (76)
409 2e7g_A Putative ribosome-bindi 33.6 1.1E+02 0.0038 24.0 6.6 36 454-496 43-79 (129)
410 3zzp_A TS9, ribosomal protein 33.2 81 0.0028 22.3 5.0 60 223-319 6-69 (77)
411 2lfv_A Protein DAMX; cell divi 37.5 10 0.00035 29.0 0.0 51 446-499 38-88 (106)
412 4eyt_A Telomerase associated p 29.3 1.6E+02 0.0054 21.2 6.6 42 446-498 28-69 (129)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.6e-41 Score=326.16 Aligned_cols=247 Identities=23% Similarity=0.305 Sum_probs=211.4
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
.....++|||+|||+++|+++|+++|..|| |..+.++.++|||||+|.+.++|..|+ .+++..|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-------------i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 84 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE-------------LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRE 84 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHHHHHHHTTTSC-------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-------------CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 345678999999999999999999999997 456667899999999999999999999 699999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEee
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~ 328 (522)
+.|.|.+.. ...+|||+|||..+++++|.++|+.||.|..+.++.
T Consensus 85 ~~i~v~~~~-----------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 129 (284)
T 3smz_A 85 RELSVQLQP-----------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY 129 (284)
T ss_dssp EECEEEECC-----------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred eEEEEEecC-----------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 999998732 225899999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccC
Q 009944 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408 (522)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (522)
++.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.+......
T Consensus 130 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~----------------------------- 180 (284)
T 3smz_A 130 SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPA----------------------------- 180 (284)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTT-----------------------------
T ss_pred eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcc-----------------------------
Confidence 988999999999999999999999999999999999999999966321110
Q ss_pred CCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhH
Q 009944 409 GGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGC 488 (522)
Q Consensus 409 g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A 488 (522)
........|.+|+..++.+ ++|+++|++||.|..|.|+.+. +|.+ +|+|||+|.+.++|
T Consensus 181 -----~~~~~~l~v~nlp~~~~~~------------~~l~~~f~~~G~i~~v~i~~~~-~g~~---~g~afV~f~~~~~A 239 (284)
T 3smz_A 181 -----LLHSRCLCVDRLPPGFNDV------------DALCRALSAVHSPTFCQLACGQ-DGQL---KGFAVLEYETAEMA 239 (284)
T ss_dssp -----TTSCSEEEEECCCTTCCCH------------HHHHHHTCSSSCCSEEEEEECS-SCCE---EEEEEEECSSHHHH
T ss_pred -----cCCccEEEEecCCcccCCH------------HHHHHHhhCCCCeEEEEEEECC-CCCc---ccEEEEEeCCHHHH
Confidence 0111333444444443111 4999999999999999998876 4543 68999999999999
Q ss_pred HHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 489 ATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 489 ~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
.+|+..|||..|+|++|.|.|+....
T Consensus 240 ~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 240 EEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHHHhCCCccCCeEEEEEEecCCC
Confidence 99999999999999999999998754
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.2e-41 Score=325.47 Aligned_cols=249 Identities=16% Similarity=0.241 Sum_probs=199.8
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC----CCcEEEEEEeCHHHHHHHHHhcCc
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAMALDGI 244 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~a~~a~~~~~~ 244 (522)
......++|||+|||+.+|+++|+++|..||. |..+.+.. ++|||||+|.+.++|.+|+++++.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~ 103 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGP------------IIHVDVADSLKKNFRFARIEFARYDGALAAITKTHK 103 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSC------------EEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCc
Confidence 34566889999999999999999999999997 45554433 589999999999999999999999
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-CceE
Q 009944 245 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-TLHG 323 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~ 323 (522)
.|.|+.|.|.++ ..++|||+|||..+++++|.++|+.|| .|..
T Consensus 104 ~~~g~~i~v~~~------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~ 147 (292)
T 2ghp_A 104 VVGQNEIIVSHL------------------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALS 147 (292)
T ss_dssp EETTEECEEEEC------------------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCE
T ss_pred EeCCcEEEEEEC------------------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEE
Confidence 999999999863 236899999999999999999999999 9999
Q ss_pred EEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhcc
Q 009944 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403 (522)
Q Consensus 324 v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (522)
|.++.+.. |.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.+.......
T Consensus 148 v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~----------------------- 203 (292)
T 2ghp_A 148 IRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT----------------------- 203 (292)
T ss_dssp EECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-----------------------------
T ss_pred EEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-----------------------
Confidence 99998864 889999999999999999999999999999999999999764322111
Q ss_pred CCccCCCCcCCCCCCcceEEEeeCC-CCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCC-CCCCCCCccEEEEE
Q 009944 404 GMNTLGGGMSLFGETLAKVLCLTEA-ITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQ-NGGETPGVGKVFLE 481 (522)
Q Consensus 404 ~~~~~g~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~-~g~~~~g~G~afV~ 481 (522)
.........+.|.+|+.. ++.+ +|+++|++||.|..|.|+.+.. +|.+ +|+|||+
T Consensus 204 -------~~~~~~~~~l~v~nlp~~~~t~~-------------~l~~~F~~~G~v~~v~i~~~~~~tg~~---~g~afV~ 260 (292)
T 2ghp_A 204 -------DSATLEGREIMIRNLSTELLDEN-------------LLRESFEGFGSIEKINIPAGQKEHSFN---NCCAFMV 260 (292)
T ss_dssp ----------CCTTTEEEEEEECTTTCCHH-------------HHHHHHGGGSCEEEEECCSCCC---CC---CEEEEEE
T ss_pred -------cccCCCCceEEEECCCcccCCHH-------------HHHHHHhccCCeeEEEEEecCCcCCCC---ceEEEEE
Confidence 000111245556666655 5544 9999999999999999999765 3544 6899999
Q ss_pred ecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 482 YYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 482 F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
|.+.++|.+|+ .|||..|+|++|.|.|+..+
T Consensus 261 F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 261 FENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred eCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999999 99999999999999998764
No 3
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.4e-31 Score=242.66 Aligned_cols=193 Identities=46% Similarity=0.798 Sum_probs=160.4
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~ 252 (522)
..++|||+|||+.+|+++|+++|..||.|.+... .+...|.++.++.++|||||+|.+.++|.+|+.+++..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~-~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCS-SSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhccccc-CCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 4689999999999999999999999998876432 223468999999999999999999999999999999999999999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 009944 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (522)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~ 332 (522)
|.++..+.........+....+ ...........++|||+|||..+++++|+++|++||.|..|.++.++.+
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVP---------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCT---------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred EeCCCCCCCCCCCcCCCcCCCC---------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 9998766433211111000000 0011122355689999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCC
Q 009944 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (522)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (522)
|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.++.
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999998754
No 4
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=6.9e-32 Score=238.91 Aligned_cols=170 Identities=52% Similarity=0.917 Sum_probs=152.6
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~ 252 (522)
+.++|||+|||+++|+++|+++|.+||.+.+... .++..|.++.++.++|||||+|.+.++|.+|+.+++..+.|++|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~-~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhccccc-CCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceee
Confidence 5689999999999999999999999988765321 223368999999999999999999999999999999999999999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC
Q 009944 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (522)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~ 332 (522)
|.++..+.. .....+|||+|||..+++++|+++|++||.|..|.++.++.+
T Consensus 82 v~~~~~~~~-----------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~ 132 (172)
T 2g4b_A 82 IRRPHDYQP-----------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 132 (172)
T ss_dssp EECCSSCCC-----------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT
T ss_pred ecCCcccCC-----------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCC
Confidence 998654432 122468999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||.
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 133 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp CSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999999999973
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.3e-31 Score=230.16 Aligned_cols=159 Identities=23% Similarity=0.427 Sum_probs=142.2
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
++|||+|||+++|+++|+++|..||. |..+.+ +.++|||||+|.+.++|.+|+ .+++..+.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP------------IANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN 68 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC------------EEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC------------eEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC
Confidence 58999999999999999999999997 444544 456799999999999999999 799999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEee
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~ 328 (522)
+.|.|.++...... ......+|||+|||..+++++|+++|+.||.|..+.++.
T Consensus 69 ~~i~v~~~~~~~~~---------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 121 (166)
T 3md3_A 69 NIVKINWAFQSQQS---------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 121 (166)
T ss_dssp EECEEEECCCCCCC---------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE
T ss_pred CeeEEEEcCCCCCC---------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe
Confidence 99999986543211 123446899999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 122 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 122 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 98899999999999999999999999999999999999999985
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=6.2e-31 Score=240.66 Aligned_cols=167 Identities=20% Similarity=0.360 Sum_probs=139.7
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
.+.++|||+|||+++|+++|+++|.+||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .+++..+.|+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIR------VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE------EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 4467999999999999999999999999843210 0111123556899999999999999999 79999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~ 330 (522)
|++.++....... .....+|||+|||..+++++|+++|+.||.|..|.|+.+.
T Consensus 87 i~~~~~~~~~~~~---------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 87 VRIMWSQRDPSLR---------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp CEEEECCCCTHHH---------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred ccccccccccccc---------------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 9998765433211 1123589999999999999999999999999999999884
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
+.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++.+
T Consensus 140 --~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 140 --NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp --TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred --CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 55799999999999999999999999999999999999965
No 7
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.8e-30 Score=230.41 Aligned_cols=165 Identities=18% Similarity=0.361 Sum_probs=146.3
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCce
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 250 (522)
....++|||+|||+.+|+++|+++|..||.+.+ ..+.+..++.++|||||+|.+.++|.+|+++++..|.|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-------~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-------LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-------CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-------EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeE
Confidence 445789999999999999999999999999875 1377888999999999999999999999999999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCC
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~ 330 (522)
|.|.++...... ......+|||+|||..+++++|+++|+.||.|..+ .
T Consensus 83 l~v~~~~~~~~~---------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~ 130 (175)
T 1fje_B 83 IKLEKPKGRDSK---------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----S 130 (175)
T ss_dssp EEEECCCCSSCS---------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----C
T ss_pred EEEecCCCcccc---------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----c
Confidence 999987643211 11234689999999999999999999999988665 4
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++
T Consensus 131 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 131 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 58899999999999999999999999999999999999999764
No 8
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=5.2e-31 Score=241.21 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=142.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
.+.++|||+|||+.+|+++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|.+||..+++..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
..... . . . . ....+.|.+|+..+++ ++|+++|
T Consensus 93 ~~~~~---~--~-------------~-~----------------~~~~l~v~nl~~~~t~-------------~~l~~~F 124 (213)
T 4f02_A 93 QRDPS---L--R-------------K-S----------------GVGNIFIKNLDKSIDN-------------KALYDTF 124 (213)
T ss_dssp CCCTH---H--H-------------H-H----------------CTTEEEEESCCTTCCH-------------HHHHHHH
T ss_pred ccccc---c--c-------------c-c----------------ccccceECCcccccHH-------------HHHHHHH
Confidence 65210 0 0 0 0 0133445555555444 4999999
Q ss_pred hccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 452 ~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++||.|..|.|+.+... .+|+|||+|.+.++|.+||+.|||..|+|++|.|.|+...
T Consensus 125 ~~~G~i~~~~i~~d~~~-----~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 125 SAFGNILSCKVVCDENG-----SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp GGGSCEEEEEEEEETTE-----EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred hhcCCeEEEEeeccCCC-----CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 99999999999887522 3689999999999999999999999999999999998753
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.6e-30 Score=229.20 Aligned_cols=164 Identities=20% Similarity=0.325 Sum_probs=140.8
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~ 251 (522)
..++|||+|||+++|+++|+++|..||.|.... .+.+...+.++|||||+|.+.++|..|+ .+++..+.|++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCR------IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 357899999999999999999999999743211 0111123446799999999999999999 599999999999
Q ss_pred EEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC
Q 009944 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331 (522)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~ 331 (522)
.|.++..... .....+|||+|||..+++++|+++|++||.|..+.++.++.
T Consensus 76 ~v~~~~~~~~-----------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 76 KVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp EEEECCCCSS-----------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred EEEecCCCcc-----------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 9998654321 12346899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHHcCCccCC--eEEEEEEc
Q 009944 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRA 371 (522)
Q Consensus 332 ~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~ 371 (522)
+|.++|||||+|.+.++|.+|+..|||..|.| ++|.|.||
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999999999999999977 99999986
No 10
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=4e-30 Score=232.68 Aligned_cols=171 Identities=22% Similarity=0.422 Sum_probs=142.1
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHHHhcC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDG 243 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~~~ 243 (522)
.....++|||+|||+++|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|+++++
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i------------~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 76 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTL------------TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP 76 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCE------------EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCE------------EEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC
Confidence 34567899999999999999999999999984 33332 4468999999999999999998899
Q ss_pred ceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE
Q 009944 244 IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323 (522)
Q Consensus 244 ~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~ 323 (522)
..|.|+.|.|.++........ .......++|||+|||..+++++|+++|+.||.|..
T Consensus 77 ~~~~g~~l~v~~~~~~~~~~~-----------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 133 (196)
T 1l3k_A 77 HKVDGRVVEPKRAVSREDSQR-----------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133 (196)
T ss_dssp CEETTEECEEEECCC----------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE
T ss_pred CEECCEEeeeecccCcccccc-----------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEE
Confidence 999999999998654432110 011234479999999999999999999999999999
Q ss_pred EEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCC
Q 009944 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (522)
Q Consensus 324 v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 376 (522)
|.++.++.+|.++|||||+|.+.++|.+||.. +|..|.|+.|.|.++.++..
T Consensus 134 v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 99999988999999999999999999999986 89999999999999977543
No 11
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=4.3e-30 Score=226.43 Aligned_cols=164 Identities=25% Similarity=0.365 Sum_probs=141.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 46999999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc
Q 009944 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~ 453 (522)
.... .......|.+|+..++. ++|+++|++
T Consensus 83 ~~~~-------------------------------------~~~~~l~v~nl~~~~t~-------------~~l~~~f~~ 112 (168)
T 1b7f_A 83 GGES-------------------------------------IKDTNLYVTNLPRTITD-------------DQLDTIFGK 112 (168)
T ss_dssp CSST-------------------------------------TTTCEEEEESCCTTCCH-------------HHHHHHHTS
T ss_pred Cccc-------------------------------------CCCCCEEEeCCCCCCCH-------------HHHHHhhhc
Confidence 3211 00123333344443333 499999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCC--eEEEEEEe
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYY 510 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~G--r~l~v~~~ 510 (522)
||.|..|.++.+..++.+ +|+|||+|.+.++|.+|++.|||..|.| ++|.|.|+
T Consensus 113 ~G~i~~~~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 113 YGSIVQKNILRDKLTGRP---RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEEEEEEEcCCCCCc---ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999998766654 6899999999999999999999999988 99999985
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=7.5e-30 Score=224.57 Aligned_cols=164 Identities=28% Similarity=0.455 Sum_probs=141.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc
Q 009944 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~ 453 (522)
.... .......|.+|+..++. ++|+++|++
T Consensus 82 ~~~~-------------------------------------~~~~~l~v~nl~~~~t~-------------~~l~~~f~~ 111 (167)
T 1fxl_A 82 SSAS-------------------------------------IRDANLYVSGLPKTMTQ-------------KELEQLFSQ 111 (167)
T ss_dssp CCGG-------------------------------------GTTCEEEEESCCTTCCH-------------HHHHHHHGG
T ss_pred Cccc-------------------------------------CCCCcEEECCCCCcCCH-------------HHHHHHHHh
Confidence 3210 00133344444444433 499999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeE--EEEEEe
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNT--VNAFYY 510 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~--l~v~~~ 510 (522)
||.|..|.++.+..+|.+ .|+|||+|.+.++|.+|++.|||..|+|+. |.|.|+
T Consensus 112 ~G~i~~~~i~~~~~~g~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 112 YGRIITSRILVDQVTGVS---RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp GSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cCCEeEEEEEecCCCCCc---cceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999988766654 689999999999999999999999999975 888885
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.5e-29 Score=222.68 Aligned_cols=157 Identities=22% Similarity=0.387 Sum_probs=138.9
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHH-HhcCcee
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~-~~~~~~~ 246 (522)
.++|||+|||+.+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|..|+ .+++..+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i------------~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 69 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEI------------ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 69 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCE------------EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCe------------EEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 4789999999999999999999999974 44443 344699999999999999999 5999999
Q ss_pred cCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEE
Q 009944 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (522)
Q Consensus 247 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~ 326 (522)
.|+.|.|.++...... ....+|||+|||..+++++|+++|++||.|..+.+
T Consensus 70 ~g~~l~v~~~~~~~~~-----------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 120 (167)
T 1fxl_A 70 QTKTIKVSYARPSSAS-----------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 120 (167)
T ss_dssp TTEECEEEECCCCCGG-----------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCceEEEEecCCCccc-----------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEE
Confidence 9999999986543211 22368999999999999999999999999999999
Q ss_pred eeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeE--EEEEEc
Q 009944 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT--LTVRRA 371 (522)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~--l~v~~~ 371 (522)
+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+. |.|.||
T Consensus 121 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 121 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999889999999999999999999999999999999964 888875
No 14
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.7e-30 Score=224.65 Aligned_cols=166 Identities=18% Similarity=0.286 Sum_probs=139.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
++|||+|||..+++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999986 5789999999999999999999999999999999999998664
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhcc
Q 009944 375 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 454 (522)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~ 454 (522)
..... .......|.+|+..++. ++|+++|++|
T Consensus 80 ~~~~~-----------------------------------~~~~~l~v~nl~~~~t~-------------~~l~~~f~~~ 111 (166)
T 3md3_A 80 QQSSS-----------------------------------DDTFNLFVGDLNVNVDD-------------ETLRNAFKDF 111 (166)
T ss_dssp CCCCC-----------------------------------TTCEEEEEESCCTTCCH-------------HHHHHHHTTS
T ss_pred CCCCC-----------------------------------CCCceEEECCCCCCCCH-------------HHHHHHHhcc
Confidence 32110 00122333334333333 4999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 455 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 455 G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
|.|..|.++.+..+|.+ +|+|||+|.+.++|.+|+..|||..|+|++|.|.|+.+
T Consensus 112 G~i~~~~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 112 PSYLSGHVMWDMQTGSS---RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TTEEEEEEEECTTTCCE---EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCeeEEEEEecCCCCCc---ceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999999988767654 78999999999999999999999999999999999864
No 15
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1e-29 Score=233.75 Aligned_cols=177 Identities=26% Similarity=0.424 Sum_probs=148.2
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE------ecCCCcEEEEEEeCHHHHHHHH-Hh
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY------INHEKKFAFVEMRTVEEASNAM-AL 241 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~------~~~~~g~afV~f~~~~~a~~a~-~~ 241 (522)
......++|||+|||+++|+++|+++|..||.| ..+. .+.++|||||+|.+.++|.+|+ .+
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i------------~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPI------------KSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCE------------EEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHH
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCE------------EEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHc
Confidence 455678899999999999999999999999974 4443 3557899999999999999999 59
Q ss_pred cCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc
Q 009944 242 DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 321 (522)
Q Consensus 242 ~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i 321 (522)
++..|.|+.|.|.++........... . ........++|||+|||..+++++|+++|++||.|
T Consensus 91 ~~~~~~g~~l~v~~~~~~~~~~~~~~----------~--------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v 152 (216)
T 2qfj_A 91 NSVMLGGRNIKVGRPSNIGQAQPIID----------Q--------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI 152 (216)
T ss_dssp SSCCCC-CCCEEECCSCCGGGHHHHH----------H--------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCE
T ss_pred cCCeeCCeeEEEecCCCccccchhhh----------h--------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCe
Confidence 99999999999988665432110000 0 00011334799999999999999999999999999
Q ss_pred eEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCC
Q 009944 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (522)
Q Consensus 322 ~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (522)
..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.++.
T Consensus 153 ~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 153 KSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred eEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 999999998899999999999999999999999999999999999999998753
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=6.8e-31 Score=231.29 Aligned_cols=159 Identities=22% Similarity=0.496 Sum_probs=139.7
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHHHhcCcee
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDGIIF 246 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~~~~~~ 246 (522)
+.++|||+|||+++|+++|+++|..||. |..+.+ +.++|||||+|.+.++|.+|++ ++..+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~ 68 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT------------VTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHIL 68 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC------------EEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-ccccc
Confidence 4689999999999999999999999997 444443 5568999999999999999996 46789
Q ss_pred cCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEE
Q 009944 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (522)
Q Consensus 247 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~ 326 (522)
.|+.|.|.++...... ....+|||+|||..+++++|+++|++||.|..|.+
T Consensus 69 ~g~~i~v~~~~~~~~~-----------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i 119 (167)
T 2cjk_A 69 DGKVIDPKRAIPRDEQ-----------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQL 119 (167)
T ss_dssp TTEECCCEECCCHHHH-----------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEEC
T ss_pred CCeEcccccccchhhc-----------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEE
Confidence 9999998875432111 12358999999999999999999999999999999
Q ss_pred eeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
+.++.+|.++|||||+|.+.++|.+|++ ++|..|.|+.|.|.|+.++
T Consensus 120 ~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 120 MLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9998899999999999999999999998 8999999999999999764
No 17
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.7e-29 Score=229.98 Aligned_cols=179 Identities=21% Similarity=0.372 Sum_probs=142.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999998765
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc
Q 009944 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~ 453 (522)
..... .... ...... .....+.|.+|+..++. ++|+++|++
T Consensus 108 ~~~~~-----~~~~------~~~~~~---------------~~~~~l~v~nlp~~~t~-------------~~l~~~f~~ 148 (216)
T 2qfj_A 108 IGQAQ-----PIID------QLAEEA---------------RAFNRIYVASVHQDLSD-------------DDIKSVFEA 148 (216)
T ss_dssp CGGGH-----HHHH------HHHHHH---------------TTSCEEEEECCCTTCCH-------------HHHHHHHTT
T ss_pred ccccc-----hhhh------hhhccc---------------CCCcEEEEeCCCCcCCH-------------HHHHHHHhc
Confidence 32110 0000 000000 00133334444444333 499999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
||.|..|.|+.+..+|.. +|+|||+|.+.++|.+|+..|||..|+|++|.|.|+....
T Consensus 149 ~G~v~~v~i~~~~~~g~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 149 FGKIKSATLARDPTTGKH---KGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp SSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred cCCeeEEEEEecCCCCCc---CceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 999999999998777654 7899999999999999999999999999999999987643
No 18
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=2.6e-29 Score=227.28 Aligned_cols=174 Identities=20% Similarity=0.317 Sum_probs=140.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+|+++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+||+. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3457999999999999999999999999999999999998999999999999999999999985 899999999999998
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
........+. .......+.|.+|+..++. ++|+++|
T Consensus 90 ~~~~~~~~~~-------------------------------~~~~~~~l~V~nLp~~~t~-------------~~l~~~F 125 (196)
T 1l3k_A 90 VSREDSQRPG-------------------------------AHLTVKKIFVGGIKEDTEE-------------HHLRDYF 125 (196)
T ss_dssp CC------------------------------------------CCSEEEEECCTTTCCH-------------HHHHHHH
T ss_pred cCcccccccc-------------------------------cCCCcceEEEeCCCCCCCH-------------HHHHHHH
Confidence 6532211000 0000123334444444333 4999999
Q ss_pred hccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 452 ~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++||.|..|.|+.+..+|.+ +|+|||+|.+.++|.+|+.. +|..|+|++|.|.|+....
T Consensus 126 ~~~G~i~~v~i~~~~~~g~~---~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 126 EQYGKIEVIEIMTDRGSGKK---RGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp TTTSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred hcCCCeEEEEEeecCCCCCc---cceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 99999999999998767654 78999999999999999986 8999999999999987654
No 19
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=7.2e-29 Score=220.09 Aligned_cols=165 Identities=21% Similarity=0.324 Sum_probs=134.7
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec--CCCcEEEEEEeCHHHHHHHH-HhcCceec--
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTVEEASNAM-ALDGIIFE-- 247 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~a~~a~-~~~~~~~~-- 247 (522)
+.++|||+|||+++|+++|+++|.+||.|.... .+.+...+ .++|||||+|.+.++|.+|+ .+++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEIN------VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 357999999999999999999999999853210 01111111 57899999999999999999 69998776
Q ss_pred -CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEE
Q 009944 248 -GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (522)
Q Consensus 248 -g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~ 326 (522)
++.+.+.++..... ......+|||+|||..+++++|+++|++||.|..|.+
T Consensus 76 ~~~~~~~~~~~~~~~----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 76 MHHPIQMKPADSEKN----------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp CSSCCEEEECGGGCC----------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CccceEEcccccccc----------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 57777776432211 0123468999999999999999999999999999999
Q ss_pred eeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC---CeEEEEEEcc
Q 009944 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTLTVRRAT 372 (522)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~l~v~~~~ 372 (522)
+.++ +|.++|||||+|.+.++|.+|+..|||..+. |++|.|.||.
T Consensus 128 ~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9985 6999999999999999999999999998775 4999999973
No 20
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.8e-28 Score=221.63 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=138.1
Q ss_pred ccceeEEeCCC-ccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 173 HARRVYVGGLP-PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 173 ~~~~v~v~nlp-~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~-~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
..++|||+||| ..+|+++|+++|..||. |.++.+.. .+|||||+|.+.++|..|+ .|||..|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~------------v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN------------VEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC------------EEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC------------eEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35689999999 79999999999999997 66666554 5799999999999999999 6999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCC-cccccccCCC-------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc
Q 009944 250 AVRVRRPTDYNPTLAAALGPGQPSPN-LNLAAVGLAS-------GAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 321 (522)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i 321 (522)
+|.|.+++.................. .......... .......+..+|||+|||+.+++++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 99999876432110000000000000 0000000000 001112345789999999999999999999999998
Q ss_pred --eEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCe----EEEEEEc
Q 009944 322 --HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK----TLTVRRA 371 (522)
Q Consensus 322 --~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~----~l~v~~~ 371 (522)
..|+++.+. +..+|||||+|.+.++|.+||..|||..|.|. ++.|.++
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 889988774 56679999999999999999999999999876 6777765
No 21
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.4e-28 Score=216.76 Aligned_cols=165 Identities=19% Similarity=0.322 Sum_probs=137.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCC--CcceEEEEEEcChHHHHHHHHHHcCCccC---CeEEEE
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG--NSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTLTV 368 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g--~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~l~v 368 (522)
.++|||+|||+.+++++|+++|++||.|..|.++.++.+| .++|||||+|.+.++|.+|++.|+|..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 3689999999999999999999999999999999998776 89999999999999999999999998775 688888
Q ss_pred EEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHH
Q 009944 369 RRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMR 448 (522)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~ 448 (522)
.++........ ......|.+|+..++. ++|+
T Consensus 83 ~~~~~~~~~~~------------------------------------~~~~l~v~nl~~~~t~-------------~~l~ 113 (175)
T 3nmr_A 83 KPADSEKNNAV------------------------------------EDRKLFIGMISKKCTE-------------NDIR 113 (175)
T ss_dssp EECGGGCCSCG------------------------------------GGSEEEEESCCTTCCH-------------HHHH
T ss_pred ccccccccccC------------------------------------CCCeEEEcCCCCcCCH-------------HHHH
Confidence 88755322110 0133444445444444 4999
Q ss_pred HHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccC---CeEEEEEEeC
Q 009944 449 EECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG---GNTVNAFYYP 511 (522)
Q Consensus 449 ~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~---Gr~l~v~~~~ 511 (522)
++|++||.|..|.++.+. +|.+ +|+|||+|.+.++|.+|++.|||..+. |++|.|.|++
T Consensus 114 ~~F~~~G~i~~v~~~~~~-~g~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 114 VMFSSFGQIEECRILRGP-DGLS---RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHGGGSCEEEEEEEECT-TSCE---EEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHhCCCEEEEEEEECC-CCCE---EEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999999886 4543 689999999999999999999998776 4999999985
No 22
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=3.2e-29 Score=220.53 Aligned_cols=164 Identities=20% Similarity=0.337 Sum_probs=142.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+|+++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 36899999999999999999999999999999999988999999999999999999999984 6789999999999854
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhc
Q 009944 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 453 (522)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~ 453 (522)
. .. .. . .....|.+|+..++.+ +|+++|++
T Consensus 81 ~-----~~---------------~~-~----------------~~~l~V~nlp~~~t~~-------------~l~~~F~~ 110 (167)
T 2cjk_A 81 R-----DE---------------QD-K----------------TGKIFVGGIGPDVRPK-------------EFEEFFSQ 110 (167)
T ss_dssp H-----HH---------------HH-H----------------CEEEEEEEECTTCCHH-------------HHHHHHHT
T ss_pred h-----hh---------------cc-C----------------CCeEEECCCCCCCCHH-------------HHHHHHHh
Confidence 1 00 00 0 1456666676665554 99999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
||.|..|.|+.+..+|.+ +|+|||+|.+.++|.+|++ |+|..|+|++|.|.|+...
T Consensus 111 ~G~i~~~~i~~~~~~g~~---~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 111 WGTIIDAQLMLDKDTGQS---RGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp TSCCSEEECCCSSSSSTT---SEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CccEEEEEEEEcCCCCcc---ceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999999999998777665 7899999999999999998 8999999999999998754
No 23
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.2e-27 Score=221.33 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=142.8
Q ss_pred hcccceeEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 171 TRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 171 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
....++|||+|||+ .+|+++|+++|..||. |..+.+... +|||||+|.+.++|.+|+ .+++..|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~------------i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTC------------EEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34578999999999 9999999999999997 666666544 699999999999999999 59999999
Q ss_pred CceEEEecCCCCCccccccCCCCCCCC------CcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-C
Q 009944 248 GVAVRVRRPTDYNPTLAAALGPGQPSP------NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-T 320 (522)
Q Consensus 248 g~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G-~ 320 (522)
|+.|.|.++.................. ..................+.++|||+|||..+++++|+++|+.|| .
T Consensus 99 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~ 178 (229)
T 2adc_A 99 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 178 (229)
T ss_dssp SSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC
T ss_pred CeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC
Confidence 999999987654322111000000000 000000000000011234468999999999999999999999999 9
Q ss_pred ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC-CeEEEEEEccCC
Q 009944 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATAS 374 (522)
Q Consensus 321 i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~~~ 374 (522)
|..|.++.. .+|||||+|.+.++|.+|+..|+|..|. |+.|.|.|+.++
T Consensus 179 i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 179 VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred eeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999998653 3689999999999999999999999999 999999999763
No 24
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.3e-27 Score=228.98 Aligned_cols=188 Identities=21% Similarity=0.328 Sum_probs=140.8
Q ss_pred hcccceeEEeCCCccCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCce
Q 009944 171 TRHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII 245 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~ 245 (522)
....++|||+|||+.+|+++|+ ++|..||.|.. |.....+.++|||||+|.+.++|.+|+ .|++..
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~---------v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD---------ILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP 76 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE---------EEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCe
Confidence 4557899999999999999966 89999997432 222235678999999999999999999 799999
Q ss_pred ecCceEEEecCCCCCccccccCCCCC-----------------------------------CCC----------------
Q 009944 246 FEGVAVRVRRPTDYNPTLAAALGPGQ-----------------------------------PSP---------------- 274 (522)
Q Consensus 246 ~~g~~~~v~~~~~~~~~~~~~~~~~~-----------------------------------~~~---------------- 274 (522)
|.|+.|+|.+++..........+... +..
T Consensus 77 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 3pgw_A 77 FYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH 156 (282)
T ss_pred eCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence 99999999987654321100000000 000
Q ss_pred ----------CcccccccCCCC---------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE
Q 009944 275 ----------NLNLAAVGLASG---------------------AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323 (522)
Q Consensus 275 ----------~~~~~~~~~~~~---------------------~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~ 323 (522)
.......+.... ........++|||+|||..+++++|+++|++||.|..
T Consensus 157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE
Confidence 000000000000 0012234578999999999999999999999999999
Q ss_pred EEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC-CeEEEEEEcc
Q 009944 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRAT 372 (522)
Q Consensus 324 v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~ 372 (522)
|.++.+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 237 v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 237 VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9998653 589999999999999999999999999 9999999984
No 25
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=4.9e-28 Score=228.58 Aligned_cols=156 Identities=22% Similarity=0.358 Sum_probs=141.5
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+++|+++|+++|..||. |..+.+..++|||||+|.+.++|..|+ .+++..|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGE------------PSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 445679999999999999999999999997 667778889999999999999999999 5999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeC
Q 009944 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (522)
Q Consensus 250 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~ 329 (522)
.|.|.++.. ..+|||+|||..+|+++|+++|+.||.|..|.++.+
T Consensus 87 ~l~v~~a~~-----------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 87 PLRIRFATH-----------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp ECEEEECCC-----------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred eeEeeeccc-----------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence 999998532 358999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHHc-CCccC---CeEEEEEEccCC
Q 009944 330 RDTGNSKGYGFCVYQDPAVTDIACAALN-GLKMG---DKTLTVRRATAS 374 (522)
Q Consensus 330 ~~~g~~~g~afV~f~~~~~A~~Al~~l~-g~~~~---g~~l~v~~~~~~ 374 (522)
.+|.++|||||+|.+.++|.+|+..|| |..+. +++|.|.++...
T Consensus 132 -~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 132 -DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp -TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred -CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 589999999999999999999999995 44544 999999998764
No 26
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=6.1e-27 Score=224.27 Aligned_cols=199 Identities=16% Similarity=0.229 Sum_probs=138.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
...++|||+|||..+++++|+ ++|+.||.|..|.+++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 456799999999999999966 9999999999998885 688999999999999999999999999999999999
Q ss_pred EEEccCCCCCCch--------HHHHHHH--HHHHHHHHHHHHhhccCC--------------------------------
Q 009944 368 VRRATASSGQSKT--------EQESILA--QAQQHIAIQKMALQTSGM-------------------------------- 405 (522)
Q Consensus 368 v~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~-------------------------------- 405 (522)
|.|+......... ....... ..................
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 9999765421100 0000000 000000000000000000
Q ss_pred -ccCC------CCc----------------------CCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCC
Q 009944 406 -NTLG------GGM----------------------SLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGT 456 (522)
Q Consensus 406 -~~~g------~~~----------------------~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~ 456 (522)
..++ ... ......+.+++.+.|+.. ..++++|+++|++||.
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~----------~~~~~~l~~~F~~~G~ 233 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPE----------ETNELMLSMLFNQFPG 233 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCC----------cCCHHHHHHHHHhcCC
Confidence 0000 000 001112233444444421 2233599999999999
Q ss_pred eEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccC-CeEEEEEEeC
Q 009944 457 LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYP 511 (522)
Q Consensus 457 I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~-Gr~l~v~~~~ 511 (522)
|..|.|+.+. .|+|||+|.+.++|.+|++.|||..|+ |+.|+|.|+.
T Consensus 234 i~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 234 FKEVRLVPGR--------HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred eEEEEEecCC--------CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999998653 378999999999999999999999999 9999999985
No 27
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=2.6e-27 Score=209.40 Aligned_cols=158 Identities=20% Similarity=0.342 Sum_probs=133.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----C-------CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~----G-------~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (522)
.++|||+|||..+|+++|+++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .|+|..|.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 4689999999999999999999999 6 56666554 34799999999999999999 89999999
Q ss_pred CeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHH
Q 009944 363 DKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEE 442 (522)
Q Consensus 363 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~ 442 (522)
|+.|.|.++....... ......|.+|+..++.
T Consensus 77 g~~i~v~~~~~~~~~~-------------------------------------~~~~l~v~nlp~~~t~----------- 108 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLP-------------------------------------GAHKLFIGGLPNYLND----------- 108 (172)
T ss_dssp TEECEEECCSSCCCCT-------------------------------------TTTCEEEECCCTTCCH-----------
T ss_pred CceeeecCCcccCCCC-------------------------------------CCCEEEEEcCCCcCCH-----------
Confidence 9999999876532111 0144555566655554
Q ss_pred HHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 443 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 443 ~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
++|+++|++||.|..|.|+.+..+|.+ +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+.
T Consensus 109 --~~l~~~f~~~G~v~~v~i~~~~~~g~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 109 --DQVKELLTSFGPLKAFNLVKDSATGLS---KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp --HHHHHHHHTTSCEEEEEEEECTTTCSE---EEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred --HHHHHHHHhcCCceEEEEEecCCCCCc---ceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 399999999999999999998767654 7899999999999999999999999999999999974
No 28
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.8e-27 Score=229.19 Aligned_cols=172 Identities=15% Similarity=0.333 Sum_probs=139.2
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g-~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
..++|||+|||+.+|+++|+++|..|| .|..+.+ + ....+.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i------~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 188 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRL------P-SLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT 188 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEEC------C--------CCEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEE------E-eCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 578999999999999999999999999 7533211 1 1112557899999999999999999 59999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeeC
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKD 329 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~~~~~ 329 (522)
|.|.++......... ........+|||+|||.. +++++|+++|+.||.|..|.++.+
T Consensus 189 l~v~~a~~~~~~~~~----------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~ 246 (292)
T 2ghp_A 189 LVTKVSNPLEKSKRT----------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG 246 (292)
T ss_dssp CEEEECCCC-------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC
T ss_pred EEEEECCCCcccccc----------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec
Confidence 999986543321100 012334579999999999 999999999999999999999998
Q ss_pred CC-CCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 330 RD-TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 330 ~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
.. ||.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 247 ~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 247 QKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 65 5999999999999999999999 99999999999999999774
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.3e-27 Score=214.77 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=140.1
Q ss_pred cceeEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 174 ARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 174 ~~~v~v~nlp~-~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
.++|||+|||+ .+|+++|+++|..||. |..+.+... +|||||+|.+.++|.+|+ .+++..|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCC------------CSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 47899999999 9999999999999997 555555444 699999999999999999 59999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccc-------cccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-Cce
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLA-------AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-TLH 322 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~ 322 (522)
|.|.++................ ...... .............+.++|||+|||..+++++|+++|+.|| .|.
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~ 149 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQG-LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 149 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSS-CEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCC
T ss_pred EEEEEecCCCcCCCCcCCcccc-ccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCce
Confidence 9999876543211110000000 000000 0000000111234468899999999999999999999999 999
Q ss_pred EEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC-CeEEEEEEccCC
Q 009944 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATAS 374 (522)
Q Consensus 323 ~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~~~ 374 (522)
.|.++.+ .+|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|+.++
T Consensus 150 ~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 150 GFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9998764 2689999999999999999999999999 999999999763
No 30
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=1e-27 Score=212.67 Aligned_cols=165 Identities=18% Similarity=0.289 Sum_probs=131.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |+|..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 345679999999999999999999999998766 333444578899999999999999999995 999999999999999
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHH
Q 009944 371 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREE 450 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~ 450 (522)
+......... ......|.+|+..++. ++|+++
T Consensus 88 ~~~~~~~~~~-----------------------------------~~~~l~v~nlp~~~t~-------------~~l~~~ 119 (175)
T 1fje_B 88 PKGRDSKKVR-----------------------------------AARTLLAKNLSFNITE-------------DELKEV 119 (175)
T ss_dssp CCCSSCSTTG-----------------------------------GGGEEEEESCCSSCCH-------------HHHHHH
T ss_pred CCCccccccc-----------------------------------cCCEEEEeCCCCCCCH-------------HHHHHH
Confidence 8764221100 0123334444444333 499999
Q ss_pred hhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 451 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 451 f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
|++||.|..+ ..++. .+|+|||+|.+.++|.+|+..|||..|+|++|.|.|+.+.
T Consensus 120 F~~~g~v~~~-----~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 120 FEDALEIRLV-----SQDGK---SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CTTCSEEEEE-----CSSSS---CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHhcCeEEEe-----cCCCC---CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999877 22333 3689999999999999999999999999999999998764
No 31
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.1e-27 Score=217.03 Aligned_cols=177 Identities=19% Similarity=0.302 Sum_probs=134.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC-----------CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFG-----------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G-----------~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (522)
.++|||+|||..+++++|+++|+.|| .|..+.+ +.++|||||+|.+.++|.+|| .|||..|.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 47999999999999999999999994 4444443 456899999999999999999 79999999
Q ss_pred CeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEE---eeCCCCcCcCCChHH
Q 009944 363 DKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLC---LTEAITADALADDEE 439 (522)
Q Consensus 363 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~---l~~~~~~~~l~~~~~ 439 (522)
|+.|.|.++.......... .......++. .......+...+. |+..++.
T Consensus 77 g~~i~v~~~~~~~~~~~~~-------------------~~~~~~~~~~-~~~~~~~~~~~l~v~nl~~~~~~-------- 128 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMS-------------------ENPSVYVPGV-VSTVVPDSAHKLFIGGLPNYLND-------- 128 (198)
T ss_dssp TEEEEEECCCCCCCCCCSS-------------------SCSSCCCTTS-SCCCSSCCCCEEEEECCCTTCCH--------
T ss_pred CceEEEeCCCCCCCCCCCc-------------------CCCcCCCCCC-ccCCCCCCCCEEEEeCCCCCCCH--------
Confidence 9999999987653222110 0000011111 1111112233333 4333333
Q ss_pred HHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 440 YEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 440 ~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|++||.|..|.++.+..+|.+ +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+...
T Consensus 129 -----~~l~~~f~~~G~v~~~~~~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 129 -----DQVKELLTSFGPLKAFNLVKDSATGLS---KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp -----HHHHHHHHTBSCEEEEEEEECTTTCSE---EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred -----HHHHHHHHHcCCccEEEEeecCCCCCc---ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 499999999999999999998766654 789999999999999999999999999999999998764
No 32
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.1e-27 Score=227.78 Aligned_cols=171 Identities=18% Similarity=0.185 Sum_probs=143.6
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|||+.+|+++|+++|..||.|.... .+.+..++.++|||||+|.+.++|..|+ .+++..+.|+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 166 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCF------LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 166 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEE------EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4567899999999999999999999999743210 0111113446799999999999999999 79999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHHHhcCCceEEEEeeC
Q 009944 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYF-TETQIKELLESFGTLHGFDLVKD 329 (522)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~-t~~~l~~~F~~~G~i~~v~~~~~ 329 (522)
|.|.++...... .......+|||+|||..+ ++++|+++|+.||.|..|.|+.+
T Consensus 167 i~v~~a~~~~~~--------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 167 LYVHWTDAGQLT--------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CEEEECCGGGCC--------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred EEEEECCCCCCC--------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 999986532210 012345789999999995 99999999999999999999998
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCC
Q 009944 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (522)
Q Consensus 330 ~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (522)
. +|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.++.
T Consensus 221 ~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 221 Q-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp S-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred C-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 6 89999999999999999999999999999999999999997753
No 33
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=1.5e-26 Score=208.96 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=129.5
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 294 PDRVFVGGLP-YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 294 ~~~l~v~nLp-~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
.++|||+||| ..+++++|+++|++||.|..|+++.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4689999999 89999999999999999999999865 37999999999999999999999999999999999987
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhh-ccCCccC---CCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHH
Q 009944 373 ASSGQSKTEQESILAQAQQHIAIQKMALQ-TSGMNTL---GGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMR 448 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~ 448 (522)
.+...+..... .... .......... ......+ +......+...+.|.+|+..++++ +|+
T Consensus 79 ~~~~~p~~~~~--~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~-------------~L~ 141 (205)
T 3tyt_A 79 QPAIMPGQSYG--LEDG--SCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEE-------------NFF 141 (205)
T ss_dssp CSCCCCCSCCB--CTTS--CBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHH-------------HHH
T ss_pred CCccCCCcccc--cccC--CccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHH-------------HHH
Confidence 54321110000 0000 0000000000 0000000 000000112345566676665554 999
Q ss_pred HHhhccCCe--EEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCe
Q 009944 449 EECGKYGTL--VNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN 503 (522)
Q Consensus 449 ~~f~~~G~I--~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr 503 (522)
++|++||.| ..|++..+. +. ..|+|||+|.+.++|.+||..|||..|+|.
T Consensus 142 ~~F~~~G~v~~~~v~~~~~~--~~---~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 142 EICDELGVKRPTSVKVFSGK--SE---RSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp HHHHHHTCCCCSEEEECSCC--SS---SSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred HHHHhcCCcceEEEEEEcCC--CC---CceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 999999999 899998765 22 148899999999999999999999999987
No 34
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=3.2e-26 Score=211.77 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=136.9
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 292 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 292 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
.+.++|||+|||. .+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567999999999 99999999999999999999999874 78999999999999999999999999999999999
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHhh-ccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHH
Q 009944 371 ATASSGQSKTEQESILAQAQQHIAIQKMALQ-TSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMRE 449 (522)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~ 449 (522)
+................ ........ ......++.........+..++.+.|+.... +.++|++
T Consensus 107 a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~----------t~~~l~~ 170 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQG------LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----------SEEDLKV 170 (229)
T ss_dssp CSCCCCCCCCSSSSTTT------TEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTC----------CHHHHHH
T ss_pred ecCccccCccccccccc------cccccccCcccccCCccccccccCCCCCCEEEEeCCCccC----------CHHHHHH
Confidence 97653221110000000 00000000 0000000100001111223444444442211 1149999
Q ss_pred HhhccC-CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccC-CeEEEEEEeCCc
Q 009944 450 ECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYPED 513 (522)
Q Consensus 450 ~f~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~-Gr~l~v~~~~~~ 513 (522)
+|++|| .|..|.|.... .|+|||+|.+.++|.+|+..|||..|+ |++|.|.|+...
T Consensus 171 ~f~~~G~~i~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 171 LFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTSCCEEEEEECSSS--------TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHcCCCeeEEEEEECC--------CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999 99999996532 478899999999999999999999999 999999998753
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=3.4e-26 Score=207.06 Aligned_cols=191 Identities=13% Similarity=0.116 Sum_probs=136.3
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 294 PDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 294 ~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
.++|||+|||. .+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 36899999999 99999999999999999999998764 7899999999999999999999999999999999997
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHh-hccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 373 ASSGQSKTEQESILAQAQQHIAIQKMAL-QTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
............... ....... .......++.........+..++.+.++.... +.++|+++|
T Consensus 78 ~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f 141 (198)
T 1qm9_A 78 HQNVQLPREGQEDQG------LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----------SEEDLKVLF 141 (198)
T ss_dssp CCSCCCSSSSSSSSS------CEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTC----------CHHHHHHHH
T ss_pred CCCcCCCCcCCcccc------ccccccCCchhhccCccccccccCCCCccEEEEeCCCCCC----------CHHHHHHHH
Confidence 653221110000000 0000000 00000001110011111234445554442211 125999999
Q ss_pred hccC-CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccC-CeEEEEEEeCCc
Q 009944 452 GKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYPED 513 (522)
Q Consensus 452 ~~~G-~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~-Gr~l~v~~~~~~ 513 (522)
++|| .|..|.|..+. .|+|||+|.+.++|.+|+..|||..|+ |++|.|.|+...
T Consensus 142 ~~~G~~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 142 SSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHTTSCCCEEEESSTT--------SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHcCCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999 99999996642 478899999999999999999999999 999999998753
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=2e-25 Score=210.60 Aligned_cols=156 Identities=25% Similarity=0.360 Sum_probs=133.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||+.+|+++|+++|+.||.|..|.+.++ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34468999999999999999999999999999998643 689999999999999999999999999999999998
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHh
Q 009944 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 451 (522)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f 451 (522)
.+ ...+.|.+|+..++. ++|+++|
T Consensus 94 ~~-------------------------------------------~~~l~v~nl~~~~t~-------------~~l~~~F 117 (261)
T 3sde_A 94 TH-------------------------------------------GAALTVKNLSPVVSN-------------ELLEQAF 117 (261)
T ss_dssp CC-------------------------------------------SSEEEEESCCTTCCH-------------HHHHHHH
T ss_pred cc-------------------------------------------CCcccccCCCCCCCH-------------HHHHHHH
Confidence 53 134445555544444 4999999
Q ss_pred hccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHH-hCCccC---CeEEEEEEeCCc
Q 009944 452 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL-SGRKFG---GNTVNAFYYPED 513 (522)
Q Consensus 452 ~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~l-ng~~~~---Gr~l~v~~~~~~ 513 (522)
+.||.|..|.|+.+. +|.+ +|+|||+|.+.++|.+|+..| +|..+. |++|.|.++...
T Consensus 118 ~~~G~i~~v~i~~~~-~g~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 118 SQFGPVEKAVVVVDD-RGRA---TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp GGGSCEEEEEEEEET-TSCE---EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HhcCCeEEEEeeeCC-CCCc---CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999999999884 5544 789999999999999999999 555555 999999998754
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=1.2e-21 Score=170.11 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=106.4
Q ss_pred cCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeE
Q 009944 219 NHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 297 (522)
Q Consensus 219 ~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (522)
...+|||||+|.+.++|++|+ .+++....+..+.+.......... .. ..............+|
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT---EG-------------SHHHHHHMDVEGMTSL 73 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE---CC-------------CCCSSCCCCCCBCCEE
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc---cc-------------ccccccccCCCCCCEE
Confidence 357899999999999999999 565533222222222111000000 00 0000011122345799
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCC
Q 009944 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (522)
Q Consensus 298 ~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (522)
||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.++.
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999999999998899999999999999999999999999999999999999998753
No 38
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.86 E-value=9.6e-22 Score=156.52 Aligned_cols=102 Identities=42% Similarity=0.821 Sum_probs=95.1
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
.+++|++|.|++++.++.++++|+++.++|+++|++||.|.+|.|+++..++. .+++|+|||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999999998875432 24579999999999999999999999
Q ss_pred CccCCeEEEEEEeCCcccccccC
Q 009944 498 RKFGGNTVNAFYYPEDKYFNKDY 520 (522)
Q Consensus 498 ~~~~Gr~l~v~~~~~~~~~~~~~ 520 (522)
+.|+||+|.|.|+++++|..++|
T Consensus 82 ~~f~GR~i~v~~~~~~~f~~~~~ 104 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSYHRRDF 104 (105)
T ss_dssp CEETTEECEEEEECHHHHHTTCC
T ss_pred CEeCCCEEEEEEeCHHHHhhccC
Confidence 99999999999999999999987
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=146.62 Aligned_cols=80 Identities=31% Similarity=0.542 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.||.|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999965
No 40
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=2.9e-20 Score=159.63 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=109.7
Q ss_pred CCCcEEEEEEeCHHHHHHHH-Hh-cCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeE
Q 009944 220 HEKKFAFVEMRTVEEASNAM-AL-DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 297 (522)
Q Consensus 220 ~~~g~afV~f~~~~~a~~a~-~~-~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (522)
.-+|+++|+|.+.++|++|+ ++ ++..+.| .+.+.++............. ............++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l 76 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH-------------HHHMHRDSCPLDCKV 76 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC-------------CCCSCSSSSTTSCEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc-------------cccccccCCCCCCEE
Confidence 45799999999999999999 78 9999999 99998765322111000000 000111223456799
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 298 ~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
||+|||+.+++++|+++|+.||.|..|.++.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++
T Consensus 77 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 77 YVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp EEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999999999999876 5899999999999999999999999999999999999764
No 41
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.80 E-value=6.6e-20 Score=148.51 Aligned_cols=100 Identities=31% Similarity=0.505 Sum_probs=87.7
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCC-CCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNG-GETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g-~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
.+++|++|.|++++++|.++ ++++|+++|++||.|.+|.|+++..+. ...+++|+|||+|.+.++|.+|++.||
T Consensus 18 ~ps~vl~L~Nm~~~~el~dd-----leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDD-----LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTT-----HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHH-----HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence 67899999999999887654 568999999999999999999876421 012456899999999999999999999
Q ss_pred CCccCCeEEEEEEeCCcccccccCCC
Q 009944 497 GRKFGGNTVNAFYYPEDKYFNKDYSA 522 (522)
Q Consensus 497 g~~~~Gr~l~v~~~~~~~~~~~~~~~ 522 (522)
|+.|+||+|.|.|+++++|.+++|+.
T Consensus 93 Gr~f~GR~i~v~~~~~~~f~~~~~~~ 118 (118)
T 3ue2_A 93 GRWFAGRKVVAEVYDQERFDNSDLSA 118 (118)
T ss_dssp TCEETTEECEEEEECHHHHHTTCCCC
T ss_pred CCEECCcEEEEEEcChHhccccccCC
Confidence 99999999999999999999999973
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-20 Score=141.85 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=76.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHH-cCCccCCeEEEEEEcc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRRAT 372 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v~~~~ 372 (522)
++|||+|||+.+|+++|+++|++|| .|..|.|++++.+|.++|||||+|.+.++|.+||+.+ ++..|.|+.|.|.|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 7999999999999999999999999999999999987 4578999999999998
Q ss_pred CCCC
Q 009944 373 ASSG 376 (522)
Q Consensus 373 ~~~~ 376 (522)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 43
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=142.19 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 009944 372 TA 373 (522)
Q Consensus 372 ~~ 373 (522)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=138.21 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC--ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCC----ccCCeEE
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGT--LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL----KMGDKTL 366 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~--i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~----~~~g~~l 366 (522)
.-.+|||+|||+.+|+++|+++|++||. |..|.+++++.+|.++|||||+|.+.++|.+|++.|||. .|.|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3469999999999999999999999995 679999999999999999999999999999999999996 5899999
Q ss_pred EEEEccC
Q 009944 367 TVRRATA 373 (522)
Q Consensus 367 ~v~~~~~ 373 (522)
.|.||..
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 45
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.78 E-value=5.1e-19 Score=142.22 Aligned_cols=94 Identities=26% Similarity=0.430 Sum_probs=87.0
Q ss_pred CCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 417 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 417 ~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
+.+++|++|.|+++++++.++++|++++++|+++|++||.|.+|.|+++. ++|+|||+|.+.++|.+|++.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999998763 25788999999999999999999
Q ss_pred CCccCCeEEEEEEeCCccccc
Q 009944 497 GRKFGGNTVNAFYYPEDKYFN 517 (522)
Q Consensus 497 g~~~~Gr~l~v~~~~~~~~~~ 517 (522)
|+.|+|++|.|.|+++..|..
T Consensus 77 G~~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 77 GRWFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp TCEETTEECEEEEECHHHHHH
T ss_pred CCEECCEEEEEEEEcHHHHHH
Confidence 999999999999999988754
No 46
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=133.67 Aligned_cols=82 Identities=30% Similarity=0.455 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 44689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CC
Q 009944 373 AS 374 (522)
Q Consensus 373 ~~ 374 (522)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 47
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2.6e-18 Score=148.91 Aligned_cols=150 Identities=22% Similarity=0.217 Sum_probs=102.5
Q ss_pred EEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhc
Q 009944 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQT 402 (522)
Q Consensus 323 ~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (522)
.+.|+.+. ..++|||||+|.+.++|++|+..+++....+..+.+......... .
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 55 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV------------------------T 55 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE------------------------E
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc------------------------c
Confidence 35666663 468999999999999999999998875443333333321110000 0
Q ss_pred cCCccCCCCcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEe
Q 009944 403 SGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEY 482 (522)
Q Consensus 403 ~~~~~~g~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F 482 (522)
.................++|-+|+..+++ ++|+++|++||.|..|.|+.+..+|.. +|+|||+|
T Consensus 56 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~-------------~~l~~~F~~~G~v~~~~i~~~~~~g~~---~g~afV~f 119 (158)
T 2kn4_A 56 EGSHHHHHHMDVEGMTSLKVDNLTYRTSP-------------DTLRRVFEKYGRVGDVYIPRDRYTKES---RGFAFVRF 119 (158)
T ss_dssp CCCCCSSCCCCCCBCCEEEEESCCTTCCH-------------HHHHHHHHHHSCEEEEECCCCSSCTTS---CCEEEEEE
T ss_pred ccccccccccCCCCCCEEEEeCCCCCCCH-------------HHHHHHHHhcCCeEEEEEeecCCCCcc---ceEEEEEE
Confidence 00000000001111123333334444343 499999999999999999998877765 78999999
Q ss_pred cChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 483 YDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 483 ~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
.+.++|.+||+.|||..|+|++|.|.|+....
T Consensus 120 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 120 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp SBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999999998754
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=1.7e-18 Score=140.97 Aligned_cols=81 Identities=23% Similarity=0.494 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
...+|||+|||+.+++++|+++|+.||.|..|+|+.+. +.++|||||+|.+.++|++||+.|+|..|.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34689999999999999999999999999999999984 5589999999999999999999999999999999999997
Q ss_pred CCC
Q 009944 373 ASS 375 (522)
Q Consensus 373 ~~~ 375 (522)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 643
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=3e-18 Score=131.04 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=77.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
.+|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 48999999999999999999999999999999999889999999999999999999999999999999999999999775
No 50
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=135.77 Aligned_cols=86 Identities=29% Similarity=0.560 Sum_probs=80.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987543
No 51
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=133.37 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34457899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccC
Q 009944 371 ATA 373 (522)
Q Consensus 371 ~~~ 373 (522)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 854
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=133.67 Aligned_cols=84 Identities=33% Similarity=0.651 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
..+++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7754
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=7.8e-19 Score=136.40 Aligned_cols=81 Identities=17% Similarity=0.339 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
.+|||+|||..+++++|+++|+.|| .|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 99999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 009944 373 ASS 375 (522)
Q Consensus 373 ~~~ 375 (522)
++.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 743
No 54
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=136.03 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=80.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 44567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987643
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=3.8e-18 Score=131.15 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred c
Q 009944 372 T 372 (522)
Q Consensus 372 ~ 372 (522)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=9.2e-18 Score=136.98 Aligned_cols=87 Identities=30% Similarity=0.442 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|+|..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 009944 371 ATASSGQ 377 (522)
Q Consensus 371 ~~~~~~~ 377 (522)
+.++...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876443
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=134.14 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87643
No 58
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=135.85 Aligned_cols=85 Identities=20% Similarity=0.382 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98653
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=135.40 Aligned_cols=86 Identities=29% Similarity=0.436 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 60
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=5.8e-18 Score=133.25 Aligned_cols=82 Identities=32% Similarity=0.551 Sum_probs=78.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 009944 374 SS 375 (522)
Q Consensus 374 ~~ 375 (522)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-18 Score=133.38 Aligned_cols=84 Identities=25% Similarity=0.538 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 455799999999999999999999999999999999998899999999999999999999998 9999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87644
No 62
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.1e-17 Score=136.57 Aligned_cols=85 Identities=25% Similarity=0.480 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87643
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.2e-18 Score=132.62 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 009944 371 AT 372 (522)
Q Consensus 371 ~~ 372 (522)
+.
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 64
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=3.8e-18 Score=135.52 Aligned_cols=99 Identities=28% Similarity=0.446 Sum_probs=85.0
Q ss_pred CCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 417 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 417 ~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
+.++++++|.|+++++++.+ ++.++|+++|++||.|.+|.|+++..++. ..+|+|||+|.+.++|.+|++.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~d-----d~~~dl~~~f~~~G~V~~v~i~~~~~~~~--~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDE-----DLEVETKEECEKYGKVGKCVIFEIPGAPD--DEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp GSCCSEEEEESSSCSCCC--------CHHHHHHHGGGGSCEEEEEEEECSSCCT--TTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCChHHhhH-----HHHHHHHHHHHhcCCEEEEEEecCCCCCC--CCcEEEEEEECCHHHHHHHHHHHC
Confidence 37789999999998877643 35679999999999999999998764321 236899999999999999999999
Q ss_pred CCccCCeEEEEEEeCCcccccccCCC
Q 009944 497 GRKFGGNTVNAFYYPEDKYFNKDYSA 522 (522)
Q Consensus 497 g~~~~Gr~l~v~~~~~~~~~~~~~~~ 522 (522)
|+.|+|++|.|.|+++.+|..++|+.
T Consensus 78 G~~~~Gr~i~v~~a~~~~f~~~~~~~ 103 (105)
T 2pe8_A 78 GRYFGGRVVKACFYNLDKFRVLDLAE 103 (105)
T ss_dssp TCEETTEECEEEECCHHHHHTTCCCC
T ss_pred CCEECCcEEEEEEcCHHHhhhhhccc
Confidence 99999999999999999999999863
No 65
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.3e-18 Score=135.19 Aligned_cols=86 Identities=29% Similarity=0.436 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 977543
No 66
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=8.6e-19 Score=146.87 Aligned_cols=122 Identities=19% Similarity=0.285 Sum_probs=80.4
Q ss_pred EEEEEEeCHHHHHHHH-HhcCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCC
Q 009944 224 FAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGL 302 (522)
Q Consensus 224 ~afV~f~~~~~a~~a~-~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL 302 (522)
++|++|.+...+..|| .+++....|+.- +.+.. ........++|||+||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------------------~~~~~~~~~~l~V~nL 55 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------------------PPPDVEGMTSLKVDNL 55 (135)
T ss_dssp ------------------------------CCSCC-----------------------------SCSSGGGCCCEEEECC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------------------CCCCCCCCCEEEEeCC
Confidence 6788888888888888 577766555431 11100 0111234578999999
Q ss_pred CCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCC
Q 009944 303 PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (522)
Q Consensus 303 p~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (522)
|..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|.|+.|.|.++.+..
T Consensus 56 p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 56 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999998899999999999999999999999999999999999999998754
No 67
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=6.8e-18 Score=147.08 Aligned_cols=141 Identities=20% Similarity=0.177 Sum_probs=79.8
Q ss_pred EEEeCHHHHHHHH-HhcCceec--CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCC
Q 009944 227 VEMRTVEEASNAM-ALDGIIFE--GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLP 303 (522)
Q Consensus 227 V~f~~~~~a~~a~-~~~~~~~~--g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp 303 (522)
.+|.+.++|..|+ .+++.... |+.+...+..............+.+ .............++|||+|||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~---------~~~~~~~~~~~~~~~l~V~nLp 81 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDD---------DELEPGPQRSVEGWILFVTSIH 81 (165)
T ss_dssp ----------------------------------------------------------------CCCCC-CEEEEEESCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCC---------CCCCCCCCCCCCCCEEEEeCCC
Confidence 7899999999999 67775554 4444444321110000000000000 0000001112345689999999
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCC
Q 009944 304 YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (522)
Q Consensus 304 ~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 376 (522)
..+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.++..
T Consensus 82 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 82 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999988999999999999999999999999999999999999999987543
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=131.48 Aligned_cols=83 Identities=22% Similarity=0.542 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 445789999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7754
No 69
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=7.3e-18 Score=135.43 Aligned_cols=84 Identities=33% Similarity=0.693 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9764
No 70
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=133.53 Aligned_cols=84 Identities=30% Similarity=0.518 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEE-EEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v-~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
+.++|||+|||..+++++|+++|+.||.|..| .|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87543
No 71
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=8.8e-18 Score=134.96 Aligned_cols=85 Identities=29% Similarity=0.472 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc---CCeEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTLT 367 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~~l~ 367 (522)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34557899999999999999999999999999999999988999999999999999999999999999887 899999
Q ss_pred EEEccCCC
Q 009944 368 VRRATASS 375 (522)
Q Consensus 368 v~~~~~~~ 375 (522)
|.++.++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998754
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=133.89 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCce-EEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeE----
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLH-GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT---- 365 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~---- 365 (522)
....++|||+|||..+++++|+++|++||.|. .|.++.++.+|.++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34567999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEEEccCC
Q 009944 366 LTVRRATAS 374 (522)
Q Consensus 366 l~v~~~~~~ 374 (522)
|.|.|+.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999999764
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=134.84 Aligned_cols=87 Identities=28% Similarity=0.410 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHc------CCccCCe
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN------GLKMGDK 364 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~------g~~~~g~ 364 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|| |..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456789999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEccCCCCC
Q 009944 365 TLTVRRATASSGQ 377 (522)
Q Consensus 365 ~l~v~~~~~~~~~ 377 (522)
.|.|.++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999876543
No 74
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=132.21 Aligned_cols=82 Identities=24% Similarity=0.418 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHG--------FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (522)
....++|||+|||..+++++|+++|++||.|.. |.++.++.+|.++|||||+|.+.++|.+|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 344579999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 009944 363 DKTLTVRRAT 372 (522)
Q Consensus 363 g~~l~v~~~~ 372 (522)
|+.|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999973
No 75
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=134.22 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 34689999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred CC
Q 009944 373 AS 374 (522)
Q Consensus 373 ~~ 374 (522)
++
T Consensus 102 ~~ 103 (106)
T 1p27_B 102 VR 103 (106)
T ss_dssp ES
T ss_pred CC
Confidence 64
No 76
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=2.1e-18 Score=136.67 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=76.8
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC-eEE
Q 009944 294 PDRVFVGGLPY------YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-KTL 366 (522)
Q Consensus 294 ~~~l~v~nLp~------~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-~~l 366 (522)
.++|||+|||. .+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 36899999999 99999999999999999999999999899999999999999999999999999999999 999
Q ss_pred EEEEccC
Q 009944 367 TVRRATA 373 (522)
Q Consensus 367 ~v~~~~~ 373 (522)
.|.++.+
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9999854
No 77
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.8e-18 Score=132.58 Aligned_cols=84 Identities=24% Similarity=0.457 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCC---CCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (522)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457899999999999999999999999999999998876 5689999999999999999999999999999999999
Q ss_pred EEccCCC
Q 009944 369 RRATASS 375 (522)
Q Consensus 369 ~~~~~~~ 375 (522)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997754
No 78
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=3.9e-18 Score=138.86 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=64.8
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe----cCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~----~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
..+|||+|||+.+|+++|+++|..||.| .++.+ +.++|||||+|.+.++|++|+ .|++..|.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v------------~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNI------------LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCE------------EEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCE------------EEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4579999999999999999999999984 33333 335799999999999999999 699999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~ 310 (522)
++|.|.++.......... .......++|||+|||+.+|++.
T Consensus 73 ~~i~V~~a~~~~~~~~~~---------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 73 RKVFVGRFKSRKEREAEL---------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EECEEEESSCCCC-------------------------------------------------
T ss_pred EEEEEEECCCcccccccc---------------------ccccCCCCceEeCCCCCCccccc
Confidence 999999866443211000 00122335799999999999863
No 79
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=132.99 Aligned_cols=86 Identities=23% Similarity=0.449 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeC-CCCCCcceEEEEEEcChHHHHHHHHHH-cCCccCCeEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD-RDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTV 368 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~-~~~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v 368 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.+ +.++.++|||||+|.+.++|.+||..| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345578999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 009944 369 RRATASSG 376 (522)
Q Consensus 369 ~~~~~~~~ 376 (522)
.|+.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987643
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=130.45 Aligned_cols=81 Identities=31% Similarity=0.550 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4457999999999999999999999999999999999974 999999999999999999999999999999999999998
Q ss_pred cC
Q 009944 372 TA 373 (522)
Q Consensus 372 ~~ 373 (522)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 81
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=2.5e-17 Score=132.58 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|.++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cc
Q 009944 371 AT 372 (522)
Q Consensus 371 ~~ 372 (522)
++
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.8e-17 Score=123.53 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..-|||+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.|||..+.|++|.|.+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45799999999999999999999999999999865 58999999999999999999999999999999999983
No 83
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=129.38 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
...++|||+|||..+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|.+|++.|||..|.|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345789999999999999999 99999999999999988654 88999999999999999999999999999999
Q ss_pred EEEccCCC
Q 009944 368 VRRATASS 375 (522)
Q Consensus 368 v~~~~~~~ 375 (522)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 84
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.5e-17 Score=131.48 Aligned_cols=84 Identities=25% Similarity=0.504 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.|| |..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34557899999999999999999999997 999999999989999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987543
No 85
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=135.32 Aligned_cols=83 Identities=30% Similarity=0.572 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 445799999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=2.1e-17 Score=133.72 Aligned_cols=83 Identities=28% Similarity=0.340 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 44689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCC
Q 009944 373 ASS 375 (522)
Q Consensus 373 ~~~ 375 (522)
++.
T Consensus 105 ~~~ 107 (110)
T 1oo0_B 105 VKG 107 (110)
T ss_dssp ESS
T ss_pred cCC
Confidence 653
No 87
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=4.3e-17 Score=130.64 Aligned_cols=84 Identities=24% Similarity=0.388 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC---eEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD---KTLTV 368 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g---~~l~v 368 (522)
...++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346799999999999999999999999999999999997 79999999999999999999999999999988 99999
Q ss_pred EEccCCCC
Q 009944 369 RRATASSG 376 (522)
Q Consensus 369 ~~~~~~~~ 376 (522)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987543
No 88
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=131.33 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.|+.+ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345679999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987643
No 89
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.6e-17 Score=141.08 Aligned_cols=139 Identities=20% Similarity=0.138 Sum_probs=101.2
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHH-cCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCC
Q 009944 332 TGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410 (522)
Q Consensus 332 ~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 410 (522)
...-+|+++|+|.+.++|++|++.+ ||..+.| .|.+.++.......... ........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~---------------------~~~~~~~~ 66 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS---------------------HHHHHHMH 66 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS---------------------SSCCCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc---------------------cccccccc
Confidence 3456899999999999999999999 9999999 99999875421000000 00000000
Q ss_pred CcCCCCCCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHH
Q 009944 411 GMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCAT 490 (522)
Q Consensus 411 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~ 490 (522)
.........+.|-+|+..+++ ++|+++|++||.|..|.|+.+. +|+|||+|.+.++|.+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~-------------~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~ 125 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNK-------------TELERAFGYYGPLRSVWVARNP--------PGFAFVEFEDPRDAAD 125 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSC-------------HHHHHHHHHHSCEEEEEECSSS--------CSEEEEEESSHHHHHH
T ss_pred ccCCCCCCEEEEeCCCCCCCH-------------HHHHHHHHhhCCEEEEEEeeCC--------CcEEEEEECCHHHHHH
Confidence 011111233334445444444 3999999999999999998862 4899999999999999
Q ss_pred HHHHHhCCccCCeEEEEEEeCCc
Q 009944 491 AKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 491 Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
|+..|||..|+|++|+|.|+...
T Consensus 126 A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 126 AVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999998764
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.2e-17 Score=138.66 Aligned_cols=84 Identities=20% Similarity=0.397 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|+|..|.|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9764
No 91
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=133.65 Aligned_cols=86 Identities=21% Similarity=0.363 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (522)
....++|||+|||..+++++|+++|+.||.|. .|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 009944 363 DKTLTVRRATASSG 376 (522)
Q Consensus 363 g~~l~v~~~~~~~~ 376 (522)
|+.|.|.++.++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987543
No 92
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.2e-17 Score=128.80 Aligned_cols=84 Identities=26% Similarity=0.391 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456799999999999999999999999999999999985 33689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987543
No 93
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=128.20 Aligned_cols=81 Identities=23% Similarity=0.491 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCC-cceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN-SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~-~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
+++|||+|||..+++++|.++|++||.|..|.++.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999999877666 89999999999999999999999999999999999997
Q ss_pred CC
Q 009944 373 AS 374 (522)
Q Consensus 373 ~~ 374 (522)
++
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 94
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=132.50 Aligned_cols=86 Identities=23% Similarity=0.501 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. +|..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999998 99999999999999
Q ss_pred ccCCCCC
Q 009944 371 ATASSGQ 377 (522)
Q Consensus 371 ~~~~~~~ 377 (522)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9876543
No 95
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=2.7e-17 Score=127.51 Aligned_cols=79 Identities=16% Similarity=0.377 Sum_probs=76.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+.
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 68999999999999999999999999999999999889999999999999999999999 89999999999999998763
No 96
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.4e-17 Score=135.17 Aligned_cols=81 Identities=28% Similarity=0.507 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44567899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred c
Q 009944 371 A 371 (522)
Q Consensus 371 ~ 371 (522)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 97
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=130.10 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcC--CccCCeEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTV 368 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v 368 (522)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|++ ..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999999864 69999999999999999998864 7899999999
Q ss_pred EEccCCCCC
Q 009944 369 RRATASSGQ 377 (522)
Q Consensus 369 ~~~~~~~~~ 377 (522)
.|+..+...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876443
No 98
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=131.46 Aligned_cols=84 Identities=15% Similarity=0.322 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34457899999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 99
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=3.7e-17 Score=126.11 Aligned_cols=79 Identities=24% Similarity=0.566 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999999998899999999999999999999996 5888999999999875
No 100
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=7.7e-18 Score=132.38 Aligned_cols=82 Identities=16% Similarity=0.345 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34578999999999999999999999999998988888889999999999999999999999999999999999999988
Q ss_pred cC
Q 009944 372 TA 373 (522)
Q Consensus 372 ~~ 373 (522)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=132.37 Aligned_cols=84 Identities=26% Similarity=0.394 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCc-cCCeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLES-FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK-MGDKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~-~~g~~l~v~ 369 (522)
...++|||+|||..+++++|+++|+. ||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|+|.. |.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34578999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 009944 370 RATASSG 376 (522)
Q Consensus 370 ~~~~~~~ 376 (522)
++.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976543
No 102
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=131.55 Aligned_cols=83 Identities=28% Similarity=0.492 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC-CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
...++|||+|||..+++++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4457999999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987643
No 103
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=4e-17 Score=127.40 Aligned_cols=82 Identities=30% Similarity=0.589 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|++||.|..|.++.+ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45579999999999999999999999999999999984 8899999999999999999999999999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.+..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7753
No 104
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.6e-17 Score=128.37 Aligned_cols=84 Identities=25% Similarity=0.556 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999998853 3899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cq3_A 90 ATARVM 95 (103)
T ss_dssp CCSSCC
T ss_pred cccCCC
Confidence 987654
No 105
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=141.21 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
..++|||+|||+.+++++|+++|+.|| .|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 009944 371 ATA 373 (522)
Q Consensus 371 ~~~ 373 (522)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 964
No 106
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=127.88 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4456789999999999999999999999999999999998899999999999999999999998 57899999999999
Q ss_pred ccCCCCC
Q 009944 371 ATASSGQ 377 (522)
Q Consensus 371 ~~~~~~~ 377 (522)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9876543
No 107
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=126.17 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCc--cCCeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK--MGDKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~--~~g~~l~v~ 369 (522)
.+.++|||+|||..+|+++|.++|++||.|..|.+++ .+|||||+|.+.++|.+|++.|+|.. |.|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4457899999999999999999999999999999885 36899999999999999999999865 789999999
Q ss_pred EccCC
Q 009944 370 RATAS 374 (522)
Q Consensus 370 ~~~~~ 374 (522)
|++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99764
No 108
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=135.22 Aligned_cols=85 Identities=31% Similarity=0.531 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+.++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98754
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=130.18 Aligned_cols=83 Identities=23% Similarity=0.372 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456799999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8653
No 110
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.1e-17 Score=125.31 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
....+|||+|||..+++++|+++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 445799999999999999999999999 9999999999 689999999999999999999999 9999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7753
No 111
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-16 Score=131.85 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4556789999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987543
No 112
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.1e-17 Score=125.04 Aligned_cols=75 Identities=25% Similarity=0.585 Sum_probs=72.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
+|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|++ |+|..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999875
No 113
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-17 Score=132.36 Aligned_cols=83 Identities=33% Similarity=0.605 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9664
No 114
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=131.59 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
.++|||+|||+.+|+++|.++|++||.|..|.|+.++. |.++|||||+|.+.++|.+||. ++|..|.|+.|.|.++.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 46899999999999999999999999999999999986 9999999999999999999999 99999999999999874
No 115
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=3.3e-17 Score=136.06 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..++|||+|||..+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|+.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 45689999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 009944 373 ASSG 376 (522)
Q Consensus 373 ~~~~ 376 (522)
++..
T Consensus 101 ~~~~ 104 (126)
T 3ex7_B 101 VRGP 104 (126)
T ss_dssp ESSS
T ss_pred CCCC
Confidence 7543
No 116
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=131.81 Aligned_cols=81 Identities=42% Similarity=0.727 Sum_probs=77.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999976
Q ss_pred C
Q 009944 374 S 374 (522)
Q Consensus 374 ~ 374 (522)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 3
No 117
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=3.8e-17 Score=131.55 Aligned_cols=86 Identities=26% Similarity=0.434 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..+ +..|.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345579999999999999999999999999999999999889999999999999999999999976 5999999999999
Q ss_pred ccCCCCC
Q 009944 371 ATASSGQ 377 (522)
Q Consensus 371 ~~~~~~~ 377 (522)
+.++...
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876544
No 118
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=4.6e-18 Score=170.55 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||+.||+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCC
Q 009944 372 TAS 374 (522)
Q Consensus 372 ~~~ 374 (522)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 764
No 119
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=4.3e-17 Score=132.97 Aligned_cols=79 Identities=20% Similarity=0.408 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|.++|+.||.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34579999999999999999999999999999999865 556999999999999999999999999999999999999
Q ss_pred cC
Q 009944 372 TA 373 (522)
Q Consensus 372 ~~ 373 (522)
.+
T Consensus 83 ~~ 84 (115)
T 3lqv_A 83 NA 84 (115)
T ss_dssp CH
T ss_pred cC
Confidence 65
No 120
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.4e-18 Score=129.15 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
.+.++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999988775
Q ss_pred c
Q 009944 372 T 372 (522)
Q Consensus 372 ~ 372 (522)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=1.2e-16 Score=137.87 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87543
No 122
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=130.19 Aligned_cols=82 Identities=26% Similarity=0.585 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4456899999999999999999999999999999999884 45899999999999999999999999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 123
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=132.57 Aligned_cols=79 Identities=18% Similarity=0.365 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 468999999999999999999999999999999999989999999999999999999999 9999999999999999854
No 124
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.7e-17 Score=131.12 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHHhcCCceEEEEeeCCCCC---CcceEEEEEEcChHHHHHHHHHHcCCccCCeE
Q 009944 292 EGPDRVFVGGLPYYFTETQIK---ELLESFGTLHGFDLVKDRDTG---NSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~~~~~~~~g---~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (522)
...++|||+|||+.+++++|. ++|++||.|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345789999999999999999 999999999999999887644 55699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 009944 366 LTVRRATASS 375 (522)
Q Consensus 366 l~v~~~~~~~ 375 (522)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 125
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=135.83 Aligned_cols=82 Identities=20% Similarity=0.343 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEE
Q 009944 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (522)
Q Consensus 290 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (522)
.....++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ec
Q 009944 370 RA 371 (522)
Q Consensus 370 ~~ 371 (522)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 126
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=137.34 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--EEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCC----ccCCeE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHG--FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL----KMGDKT 365 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~----~~~g~~ 365 (522)
...++|||+|||+.+++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+. +|.+|+..|||. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45679999999999999999999999999976 99999999999999999999999 999999999999 999999
Q ss_pred EEEEEccCC
Q 009944 366 LTVRRATAS 374 (522)
Q Consensus 366 l~v~~~~~~ 374 (522)
|.|.++.+.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 127
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.1e-17 Score=129.96 Aligned_cols=80 Identities=33% Similarity=0.561 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.+ |.+|+..|||..|.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999889999999999999999 99999999999999999999999764
Q ss_pred C
Q 009944 375 S 375 (522)
Q Consensus 375 ~ 375 (522)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 128
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=128.15 Aligned_cols=80 Identities=24% Similarity=0.320 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCe-E
Q 009944 293 GPDRVFVGGLPYYF------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-T 365 (522)
Q Consensus 293 ~~~~l~v~nLp~~~------t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~ 365 (522)
..++|||+|||..+ ++++|+++|++||.|..|.|+ ..+|.++|||||+|.+.++|.+|+..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35789999999999 789999999999999999988 35899999999999999999999999999999998 9
Q ss_pred EEEEEccCC
Q 009944 366 LTVRRATAS 374 (522)
Q Consensus 366 l~v~~~~~~ 374 (522)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999764
No 129
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=132.07 Aligned_cols=82 Identities=27% Similarity=0.502 Sum_probs=77.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. +|..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47999999999999999999999999999999999988999999999999999999999997 99999999999999987
Q ss_pred CCC
Q 009944 374 SSG 376 (522)
Q Consensus 374 ~~~ 376 (522)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 130
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.6e-17 Score=128.60 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
.....+|||+|||+.+++++|+++|+.||.| .|.|+.++ +|.++|||||+|.+.++|++||+ +|+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455799999999999999999999999955 99999997 89999999999999999999995 799999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8764
No 131
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-17 Score=123.80 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999998899999999999999999999999999 9999999999987
No 132
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=126.33 Aligned_cols=82 Identities=20% Similarity=0.395 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999865 456899999999999999999999999999999999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 97754
No 133
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=9.7e-17 Score=131.09 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (522)
...++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||+ |||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45578999999999999999999999999 89999999975 9999999999999999999999 9999999999999
Q ss_pred EEccC
Q 009944 369 RRATA 373 (522)
Q Consensus 369 ~~~~~ 373 (522)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99853
No 134
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=124.46 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHc--CCccCCeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v~ 369 (522)
.+.++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|+ +..|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45579999999999999999999999999999988764 7999999999999999999875 678999999999
Q ss_pred EccCCCC
Q 009944 370 RATASSG 376 (522)
Q Consensus 370 ~~~~~~~ 376 (522)
|+..+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9987543
No 135
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.1e-17 Score=131.59 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc-eEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (522)
....++|||+|||+.+++++|+++|+.||.| ..|.|+.++ +|.++|||||+|.+.++|.+||.. ||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456799999999999999999999999999 899999998 999999999999999999999986 9999999999999
Q ss_pred EccC
Q 009944 370 RATA 373 (522)
Q Consensus 370 ~~~~ 373 (522)
++.+
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9854
No 136
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=127.89 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcC--CccCCeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v~ 369 (522)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|++ ..|.|++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34578999999999999999999999999999999875 69999999999999999999874 68999999999
Q ss_pred EccCCCCC
Q 009944 370 RATASSGQ 377 (522)
Q Consensus 370 ~~~~~~~~ 377 (522)
|+..+...
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99876443
No 137
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=129.02 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEe-eCCCCCCcceEEEEEEcChHHHHHHHHHHc--CCccCCeEEEE
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLV-KDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTV 368 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~~~-~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v 368 (522)
..++|||+|||..+++++|+++|+.||. |..|.++ .+..+|.++|||||+|.+.++|.+|+..|+ +..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3468999999999999999999999998 9999998 787889999999999999999999999996 59999999999
Q ss_pred EEccCCC
Q 009944 369 RRATASS 375 (522)
Q Consensus 369 ~~~~~~~ 375 (522)
.|+.++.
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9998754
No 138
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=128.61 Aligned_cols=82 Identities=21% Similarity=0.484 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc--------CC
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--------GD 363 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--------~g 363 (522)
...++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 455799999999999999999999999999999999997 999999999999999999999999999999 68
Q ss_pred eEEEEEEccCC
Q 009944 364 KTLTVRRATAS 374 (522)
Q Consensus 364 ~~l~v~~~~~~ 374 (522)
++|.|.|+.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999764
No 139
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=127.32 Aligned_cols=82 Identities=16% Similarity=0.329 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~-v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....+|||+|||+.+++++|+++|+.||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 44579999999999999999999999999987 888888 6999999999999999999999997 99999999999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87643
No 140
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=125.89 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCC--ccCCeEEEE
Q 009944 292 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL--KMGDKTLTV 368 (522)
Q Consensus 292 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~--~~~g~~l~v 368 (522)
.+.++|||+|||+ .+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|++. .|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3567899999999 9999999999999999999999865 479999999999999999999864 599999999
Q ss_pred EEccCC
Q 009944 369 RRATAS 374 (522)
Q Consensus 369 ~~~~~~ 374 (522)
.|+...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999854
No 141
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-17 Score=130.36 Aligned_cols=81 Identities=27% Similarity=0.506 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCC-CCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR-DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~-~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
...++|||+|||..+++++|+++|+.|| |..|.|+.++ .+|.++|||||+|.+.++|.+|+ .|+|..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4457999999999999999999999999 9999999987 58999999999999999999999 8999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+.++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9764
No 142
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=124.51 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCC--ccCCeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL--KMGDKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~--~~~g~~l~v~ 369 (522)
.+.++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|++. .|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 44579999999999999999999999999999998753 689999999999999999998764 5999999999
Q ss_pred EccCCC
Q 009944 370 RATASS 375 (522)
Q Consensus 370 ~~~~~~ 375 (522)
|+..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 997754
No 143
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.6e-16 Score=131.47 Aligned_cols=80 Identities=21% Similarity=0.422 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999889999999999999999999999 7999999999999999876
Q ss_pred C
Q 009944 374 S 374 (522)
Q Consensus 374 ~ 374 (522)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 144
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=9.2e-17 Score=133.66 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (522)
...++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|++||+ |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 44578999999999999999999999999 89999999976 9999999999999999999999 9999999999999
Q ss_pred EEccC
Q 009944 369 RRATA 373 (522)
Q Consensus 369 ~~~~~ 373 (522)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99853
No 145
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.8e-16 Score=125.00 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC-----eEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-----KTL 366 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-----~~l 366 (522)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 44579999999999999999999999999999999875 799999999999999999999999999 999
Q ss_pred EEEEccCCC
Q 009944 367 TVRRATASS 375 (522)
Q Consensus 367 ~v~~~~~~~ 375 (522)
.|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998754
No 146
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=129.69 Aligned_cols=80 Identities=13% Similarity=0.231 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345789999999999999866 7999999999887753 688999999999999999999999999999999999
Q ss_pred EEEccCC
Q 009944 368 VRRATAS 374 (522)
Q Consensus 368 v~~~~~~ 374 (522)
|.|+..+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999764
No 147
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=2e-16 Score=126.66 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....+|||+|||+.+++++|+++|+.|| .|..+.+.. +.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999 899998863 24789999999999999999999999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+..+
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8653
No 148
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=5.3e-17 Score=121.40 Aligned_cols=75 Identities=23% Similarity=0.432 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
+|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999999 5899999999999875
No 149
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=121.02 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 455799999999999999999999999999999987 579999999999999999999999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 150
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.2e-17 Score=134.24 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
.....+|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455799999999999999999999999999886666666799999999999999999999999 999999999999999
Q ss_pred ccC
Q 009944 371 ATA 373 (522)
Q Consensus 371 ~~~ 373 (522)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 854
No 151
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=124.17 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456899999999999999999999999977 55665 5899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98754
No 152
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=126.70 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..+|||+|||+.+++++|+++|+.| .|..|.|+.++. |.++|||||+|.+.++|.+|| .+||..|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999 899999999974 999999999999999999999 699999999999999874
No 153
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=6e-17 Score=122.96 Aligned_cols=72 Identities=25% Similarity=0.401 Sum_probs=67.4
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCe-EEE
Q 009944 295 DRVFVGGLPYYF------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TLT 367 (522)
Q Consensus 295 ~~l~v~nLp~~~------t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~ 367 (522)
++|||+|||..+ ++++|+++|++||.|..|.++ +.+|.++|||||+|.+.++|.+|+..|||..|.|+ +|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 779999999999999999988 35899999999999999999999999999999999 887
Q ss_pred E
Q 009944 368 V 368 (522)
Q Consensus 368 v 368 (522)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=123.42 Aligned_cols=82 Identities=27% Similarity=0.401 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34567899999999999999999999773 677888888999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98754
No 155
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=7.4e-16 Score=122.81 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456789999999999999999999999999999887 35999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009944 371 ATASSG 376 (522)
Q Consensus 371 ~~~~~~ 376 (522)
+.++..
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 987654
No 156
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=4.8e-17 Score=129.33 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
....+|||+|||..+++++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|.+||+ |||..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34578999999999999999999999999887 666666689999999999999999999998 9999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7754
No 157
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=5.4e-16 Score=115.60 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=67.5
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceEE
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~ 252 (522)
+..|||+||++.+|+++|+++|.+||+ |.++.+..++|||||+|.++++|.+|+ .||+..+.|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~------------V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGP------------LVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCC------------EEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 457999999999999999999999997 788888889999999999999999999 7999999999999
Q ss_pred EecCC
Q 009944 253 VRRPT 257 (522)
Q Consensus 253 v~~~~ 257 (522)
|..+.
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99863
No 158
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.6e-16 Score=122.06 Aligned_cols=78 Identities=26% Similarity=0.523 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC--CeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~v~ 369 (522)
...++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|||..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34578999999999999999999999999999988754 689999999999999999999999999 9999999
Q ss_pred EccCCC
Q 009944 370 RATASS 375 (522)
Q Consensus 370 ~~~~~~ 375 (522)
|+.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997753
No 159
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=2.3e-16 Score=144.52 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
..++|||+|||+.+|+++|+++|+.|| .|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 009944 371 ATA 373 (522)
Q Consensus 371 ~~~ 373 (522)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 160
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.1e-16 Score=121.99 Aligned_cols=79 Identities=33% Similarity=0.532 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345579999999999999999999999999999998854 68999999999999999999999999999999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97754
No 161
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=8.4e-17 Score=129.15 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
.....+|||+|||+.+|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||. ++|..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345678999999999999999999999998 89999999976 9999999999999999999999 999999999999
Q ss_pred EEEccC
Q 009944 368 VRRATA 373 (522)
Q Consensus 368 v~~~~~ 373 (522)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999854
No 162
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=118.77 Aligned_cols=77 Identities=27% Similarity=0.397 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4557899999999999999999999999999999874 38999999999999999999999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 163
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.5e-16 Score=124.56 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=72.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcC----hHH----HHHHHH--HHcCCc
Q 009944 295 DRVFVGGL----PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD----PAV----TDIACA--ALNGLK 360 (522)
Q Consensus 295 ~~l~v~nL----p~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~----A~~Al~--~l~g~~ 360 (522)
+.|||+|| |+.+++++|+++|+.||.|..+.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred cCCeEEEEEEccC
Q 009944 361 MGDKTLTVRRATA 373 (522)
Q Consensus 361 ~~g~~l~v~~~~~ 373 (522)
|+|+.|.|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 164
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.9e-16 Score=124.81 Aligned_cols=75 Identities=20% Similarity=0.403 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..++|||+|||..+++++|+++|+.||.|..|.+.. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 457999999999999999999999999999999873 57999999999999999999999999999999999986
Q ss_pred C
Q 009944 373 A 373 (522)
Q Consensus 373 ~ 373 (522)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 165
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.6e-16 Score=124.05 Aligned_cols=80 Identities=14% Similarity=0.360 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
.+.++|||+|||..+++++|+ ++|++||.|..|.++. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345799999999999999999 9999999999998873 577889999999999999999999999999999999
Q ss_pred EEEccCC
Q 009944 368 VRRATAS 374 (522)
Q Consensus 368 v~~~~~~ 374 (522)
|.|+.++
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999774
No 166
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=5.9e-17 Score=135.25 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
....+|||+|||+++|+++|+++|++|| |..|.|+.++. |.++|||||+|.+.++|++|| .+|+..|.|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3457899999999999999999999999 66999999975 999999999999999999999 68999999999999998
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7643
No 167
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.7e-16 Score=120.65 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|. +.++. +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4457999999999999999999999999997 66664 357899999999999999999999999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
No 168
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=117.84 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4457899999999999999999999999999999874 39999999999999999999999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7754
No 169
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=123.34 Aligned_cols=79 Identities=18% Similarity=0.372 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34579999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.+...
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87543
No 170
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.5e-16 Score=118.17 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHH-cCCccCCeEEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRR 370 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v~~ 370 (522)
...++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..| +|..|.|+.|.|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 44578999999999999999999999999999999863 689999999999999999998 99999999999999
Q ss_pred cc
Q 009944 371 AT 372 (522)
Q Consensus 371 ~~ 372 (522)
+.
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 171
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=4.9e-16 Score=123.44 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
++|||+|||..+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6899999999999999999999999999999999999775
Q ss_pred C
Q 009944 375 S 375 (522)
Q Consensus 375 ~ 375 (522)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 172
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=8.5e-16 Score=123.25 Aligned_cols=77 Identities=18% Similarity=0.446 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
....++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+.++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 97753
No 173
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-16 Score=129.46 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 34579999999999999999999999999844322222227889999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87543
No 174
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.9e-15 Score=118.73 Aligned_cols=75 Identities=16% Similarity=0.363 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 292 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 292 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
...++|||+|||. .+++++|+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4457999999998 99999999999999999999883 68999999999999999999999999999999999
Q ss_pred ccCC
Q 009944 371 ATAS 374 (522)
Q Consensus 371 ~~~~ 374 (522)
+..+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 175
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=127.89 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCc----eEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEE
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTL----HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i----~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (522)
...+|||+|||+.+|+++|+++|++||.| ..|.|+.+ .+|.++|||||+|.+.++|.+||+. |+..|+|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45799999999999999999999999975 68999998 4899999999999999999999995 999999999999
Q ss_pred EEccC
Q 009944 369 RRATA 373 (522)
Q Consensus 369 ~~~~~ 373 (522)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98843
No 176
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=4.6e-16 Score=122.35 Aligned_cols=79 Identities=15% Similarity=0.304 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 345799999999999999999999999988766 247889999999999999999999999999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7653
No 177
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=7.5e-16 Score=135.09 Aligned_cols=82 Identities=22% Similarity=0.364 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCC
Q 009944 372 TAS 374 (522)
Q Consensus 372 ~~~ 374 (522)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 763
No 178
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.6e-16 Score=124.56 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcC--CccCCeEEE
Q 009944 291 AEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLT 367 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~ 367 (522)
..+.++|||+|||+. +++++|+++|++||.|..|.|++ ++|||||+|.+.++|.+|++.|++ ..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345679999999998 99999999999999999999874 378999999999999999999864 569999999
Q ss_pred EEEccCCC
Q 009944 368 VRRATASS 375 (522)
Q Consensus 368 v~~~~~~~ 375 (522)
|.|+..+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997654
No 179
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=6.9e-16 Score=122.59 Aligned_cols=74 Identities=34% Similarity=0.468 Sum_probs=65.2
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCcEEEEEEeCHHHHHHHH-HhcCceecCceEE
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~-~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~~ 252 (522)
++|||+|||+.+|+++|+++|.+||. |..+.+.. ++|||||+|.+.++|.+|+ .|++..|.|+.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGP------------LRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCC------------CSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 47999999999999999999999997 44555544 5999999999999999999 5999999999999
Q ss_pred EecCCCCC
Q 009944 253 VRRPTDYN 260 (522)
Q Consensus 253 v~~~~~~~ 260 (522)
|.+++...
T Consensus 69 V~~a~~~~ 76 (101)
T 2hvz_A 69 VELSTGMP 76 (101)
T ss_dssp EEESSSCC
T ss_pred EEEccCCC
Confidence 99876554
No 180
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=119.28 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcC-CccCCeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-LKMGDKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g-~~~~g~~l~v~ 369 (522)
...++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|.|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 44578999999999999999999999999 6666553 478999999999999999999999 99999999999
Q ss_pred EccCCCC
Q 009944 370 RATASSG 376 (522)
Q Consensus 370 ~~~~~~~ 376 (522)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987543
No 181
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=5.6e-16 Score=123.34 Aligned_cols=79 Identities=29% Similarity=0.586 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|+. +|..|.|+.|.|.++.+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4689999999999999999999999999999999998 99999999999999999999999 99999999999999976
Q ss_pred CC
Q 009944 374 SS 375 (522)
Q Consensus 374 ~~ 375 (522)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 182
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9.8e-16 Score=123.61 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccC
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (522)
.++|||+|||..+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46899999999999999999999999999998874 468999999999999999999999999999999999976
Q ss_pred CCC
Q 009944 374 SSG 376 (522)
Q Consensus 374 ~~~ 376 (522)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 543
No 183
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.61 E-value=6.3e-16 Score=119.86 Aligned_cols=80 Identities=21% Similarity=0.196 Sum_probs=66.7
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHH-h-cCceecCce
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-L-DGIIFEGVA 250 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g-~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~-~-~~~~~~g~~ 250 (522)
+++|||+|||+++|+++|+++|.+|| .|... .++.+..++.++|||||+|.+.++|.+|++ + ++..|.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v------~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREV------RLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBC------CSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEE------EEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 36899999999999999999999999 55432 234455567889999999999999999994 5 467799999
Q ss_pred EEEecCCCC
Q 009944 251 VRVRRPTDY 259 (522)
Q Consensus 251 ~~v~~~~~~ 259 (522)
|.|.++.+.
T Consensus 75 i~V~~a~~~ 83 (91)
T 2lxi_A 75 VSMHYSDPK 83 (91)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987644
No 184
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=119.23 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=67.9
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHH-hc--CceecC
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LD--GIIFEG 248 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~-~~--~~~~~g 248 (522)
...++|||+|||+.+|+++|+++|.+||. |.++.+...+|||||+|.+.++|+.|++ ++ +..|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45679999999999999999999999997 7778887889999999999999999994 65 478999
Q ss_pred ceEEEecCCCC
Q 009944 249 VAVRVRRPTDY 259 (522)
Q Consensus 249 ~~~~v~~~~~~ 259 (522)
++|.|.+++..
T Consensus 82 r~l~V~~A~~~ 92 (105)
T 1sjq_A 82 QPIYIQFSNHK 92 (105)
T ss_dssp EECCBCCCSSS
T ss_pred EEEEEEEcCCC
Confidence 99999987654
No 185
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=4.2e-17 Score=133.21 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCe
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHG--------FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (522)
..++|||+|||..+++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4468999999999999999999999999998 89999988999999999999999999999999999999999
Q ss_pred EEEEEEccCC
Q 009944 365 TLTVRRATAS 374 (522)
Q Consensus 365 ~l~v~~~~~~ 374 (522)
.|.|.++.++
T Consensus 86 ~l~V~~a~~~ 95 (116)
T 2lcw_A 86 PIKVSFATRR 95 (116)
Confidence 9999999764
No 186
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.1e-15 Score=116.57 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc--CCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESF--GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (522)
...++|||+|||..+++++|+++|++| |.|..|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 455799999999999999999999999 889988765 5699999999999999999999999999999999
Q ss_pred EccCCC
Q 009944 370 RATASS 375 (522)
Q Consensus 370 ~~~~~~ 375 (522)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998754
No 187
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=113.50 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=65.2
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHHHHhcC-CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 294 PDR-VFVGGLPYYFTETQ----IKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 294 ~~~-l~v~nLp~~~t~~~----l~~~F~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
..+ |||+|||..+++++ |+++|++|| .|.+| +| |+|||+|.+.++|.+|++.|+|..|.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999987 568999995 99887 33 8999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 009944 368 VRRATASSG 376 (522)
Q Consensus 368 v~~~~~~~~ 376 (522)
|.||.....
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999987643
No 188
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=6.7e-16 Score=126.25 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCce--EEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLH--GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (522)
....+|||+|||+.+|+++|+++|+.| .|. .|.|+.++. |.++|||||+|.+.++|.+||+ +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 445789999999999999999999999 566 899999976 9999999999999999999998 57899999999999
Q ss_pred EccC
Q 009944 370 RATA 373 (522)
Q Consensus 370 ~~~~ 373 (522)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8854
No 189
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=117.55 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEE-EEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v-~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
..++|||+|||+.+++++|+++|+.||.|..| .++.++.+ |.|||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999 47777543 44999999999999999999999999999999999
Q ss_pred cCC
Q 009944 372 TAS 374 (522)
Q Consensus 372 ~~~ 374 (522)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 875
No 190
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=7.7e-15 Score=118.42 Aligned_cols=74 Identities=24% Similarity=0.466 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 293 GPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 293 ~~~~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
..++|||+|||.. +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|+..|+|..|.|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3479999999999 999999999999999999988 4689999999999999999999999999999999999
Q ss_pred cCC
Q 009944 372 TAS 374 (522)
Q Consensus 372 ~~~ 374 (522)
..+
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 191
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=117.02 Aligned_cols=76 Identities=21% Similarity=0.155 Sum_probs=67.6
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCc--eecC
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI--IFEG 248 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~--~~~g 248 (522)
.++++|||+|||+.+|+++|+++|.+||. |.++.+.+.+|||||+|.+.++|..|+ .+++. .|.|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGP------------ISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 45679999999999999999999999997 777887789999999999999999999 57775 4889
Q ss_pred ceEEEecCCCC
Q 009944 249 VAVRVRRPTDY 259 (522)
Q Consensus 249 ~~~~v~~~~~~ 259 (522)
++|.|.+++..
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 99999987643
No 192
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=9.2e-16 Score=130.24 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEE--------EEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGF--------DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v--------~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (522)
...++|||+|||+.+++++|+++|+.||.|..+ .+. .+|.++|||||+|.+.++|.+||..|||..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 345789999999999999999999999998764 333 378899999999999999999999999999999
Q ss_pred eEEEEEEccCCC
Q 009944 364 KTLTVRRATASS 375 (522)
Q Consensus 364 ~~l~v~~~~~~~ 375 (522)
+.|.|.++.+..
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997643
No 193
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.9e-15 Score=118.68 Aligned_cols=76 Identities=16% Similarity=0.372 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEE
Q 009944 292 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (522)
Q Consensus 292 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (522)
.+.++|||+|||. .+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3457899999998 99999999999999999999984 68999999999999999999999999999999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+.+..
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97653
No 194
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=4.9e-15 Score=120.83 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceE-EEEEEcChHHHHHHHHHHcCCccCC--eEEEEEE
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY-GFCVYQDPAVTDIACAALNGLKMGD--KTLTVRR 370 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~ 370 (522)
...|||+||++.+|+++|+++|++||.|..|.++.. .+|| |||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 346889999999999999999999999999988764 2677 9999999999999999999999988 9999999
Q ss_pred ccCCC
Q 009944 371 ATASS 375 (522)
Q Consensus 371 ~~~~~ 375 (522)
+.+..
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98753
No 195
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=119.45 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=69.1
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc-----CCe
Q 009944 292 EGPDRVFV--GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM-----GDK 364 (522)
Q Consensus 292 ~~~~~l~v--~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~-----~g~ 364 (522)
.+..+||| +||+..+++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34578999 77999999999999999999999988763 268999999999999999999999988 789
Q ss_pred EEEEEEccCC
Q 009944 365 TLTVRRATAS 374 (522)
Q Consensus 365 ~l~v~~~~~~ 374 (522)
+|.|.|+...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998754
No 196
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=7e-15 Score=116.63 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHHhcCCceEEEEeeCCCC-CCcceEEEEEEcChHHHHHHHHHHcCCccCCeE
Q 009944 292 EGPDRVFVGGLPY-----YFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (522)
Q Consensus 292 ~~~~~l~v~nLp~-----~~t~~~l~~~F~~~G~i~~v~~~~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (522)
.+.++|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3457899999963 2378999999999999999999998654 688999999999999999999999999999999
Q ss_pred EEEEEccC
Q 009944 366 LTVRRATA 373 (522)
Q Consensus 366 l~v~~~~~ 373 (522)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 197
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=8.5e-16 Score=125.23 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=84.1
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---cCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
..++|||+|||+.+|+++|+++|..||. |..+.+ +.++|||||+|.+.++|..|+ .|+|..|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGP------------IRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4579999999999999999999999997 444544 566899999999999999999 599999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC
Q 009944 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320 (522)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~ 320 (522)
+.|.|.++..... ..+++...++++|.++|++||.
T Consensus 75 ~~l~v~~a~~~~~-------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 75 RYLVVLYYNANRA-------------------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CBCEEEECCHHHH-------------------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEEEEecCChh-------------------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 9999998543211 0467788899999999999985
No 198
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=5.2e-15 Score=125.36 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC--eEEEEEEc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRA 371 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~ 371 (522)
..+|||+||++.+++++|+++|++||.|..|.|... .++|||||+|.+.++|++|++.|||..|.| +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 356999999999999999999999999999998754 257999999999999999999999999955 99999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8753
No 199
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=3e-15 Score=115.43 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..++|||+|||..+++++|+++|++| .|..|.+. .++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34689999999999999999999999 99999884 468999999999999999999999999999999999986
Q ss_pred CCC
Q 009944 373 ASS 375 (522)
Q Consensus 373 ~~~ 375 (522)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 200
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=116.56 Aligned_cols=78 Identities=24% Similarity=0.420 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|||..+++++|+++|+.||.|..| +.++.+|. ||||+|.+.++|.+||. |+|..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 55555665 99999999999999999 9999999999999998
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7654
No 201
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=118.05 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=68.3
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
..+.|-+|+..++++ +|+++|++||.|..|.|+++..+|.. +|+|||+|.+.++|.+|++.|||
T Consensus 20 t~lfV~nLp~~~te~-------------~L~~~F~~~G~I~~v~i~~d~~tg~~---kG~afV~f~~~~~A~~Ai~~lng 83 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQD-------------ELRSLFSSIGEVESAKLIRDKVAGHS---LGYGFVNYVTAKDAERAINTLNG 83 (99)
T ss_dssp SEEEEESCCTTCCHH-------------HHHHHHHTTSCEEEEEEEECSSSCCE---EEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHH-------------HHHHHHHhcCCEEEeEeeecCCCCcc---cccEEEEECCHHHHHHHHHHhCC
Confidence 445555566555554 99999999999999999998877765 78999999999999999999999
Q ss_pred CccCCeEEEEEEeCC
Q 009944 498 RKFGGNTVNAFYYPE 512 (522)
Q Consensus 498 ~~~~Gr~l~v~~~~~ 512 (522)
..|+|++|+|.|+.+
T Consensus 84 ~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 84 LRLQSKTIKVSYARP 98 (99)
T ss_dssp CEETTEECEEEECCB
T ss_pred CEECCEEEEEEEeeC
Confidence 999999999999854
No 202
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=115.76 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=73.2
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceE
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~ 251 (522)
...++|||+|||+.+|+++|+++|..||.|.. . .+.+..++.++|||||+|.+.++|.+|++|++..|.|+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~------~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-L------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E------EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 34679999999999999999999999999875 2 3777788999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 009944 252 RVRRPTDY 259 (522)
Q Consensus 252 ~v~~~~~~ 259 (522)
.|.++...
T Consensus 88 ~V~~a~~~ 95 (101)
T 1fj7_A 88 KLEKPKGR 95 (101)
T ss_dssp EEECCSCC
T ss_pred EEEEcCCC
Confidence 99987654
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=5.4e-15 Score=117.25 Aligned_cols=87 Identities=22% Similarity=0.359 Sum_probs=69.6
Q ss_pred eEEEeeCCCC-cCcCCC--------------hHHHHHHHHHHHHHh-hccCCeEEEEecCCCCCCCCCCCccEEEEEecC
Q 009944 421 KVLCLTEAIT-ADALAD--------------DEEYEEILEDMREEC-GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYD 484 (522)
Q Consensus 421 ~v~~l~~~~~-~~~l~~--------------~~~~~~~~~~l~~~f-~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~ 484 (522)
.+++|.|+++ +..... ...|.++.++|+++| ++||.|.+|.|+++.. +. .+|+|||+|.+
T Consensus 2 ~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~---~~G~~fV~f~~ 77 (104)
T 1jmt_A 2 QTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DH---LVGNVYVKFRR 77 (104)
T ss_dssp CEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SS---SEEEEEEEESC
T ss_pred cEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CC---ccEEEEEEECC
Confidence 4677777773 432221 234667788899999 9999999999998763 33 37899999999
Q ss_pred hHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 485 AVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 485 ~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
.++|.+|+..|||+.|+|++|.|.|+|
T Consensus 78 ~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 78 EEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 999999999999999999999999975
No 204
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=113.84 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|+|..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34579999996 89999999999999999999884 45789999999999999999999999999999999999
Q ss_pred cCCCC
Q 009944 372 TASSG 376 (522)
Q Consensus 372 ~~~~~ 376 (522)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87543
No 205
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=117.07 Aligned_cols=97 Identities=22% Similarity=0.346 Sum_probs=81.4
Q ss_pred CCCCcceEEEeeCCCCcCcCC-ChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHH
Q 009944 415 FGETLAKVLCLTEAITADALA-DDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKN 493 (522)
Q Consensus 415 ~~~~~~~v~~l~~~~~~~~l~-~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~ 493 (522)
..+.++++++|.|++...++. ++.+|++++++|+++|++||.|..|.|+... .+|+|||+|.+.++|.+|+.
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~-------~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRH-------PDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTC-------TTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCC-------CCEEEEEEECCHHHHHHHHH
Confidence 345788999999998887653 4567899999999999999999999774321 25889999999999999999
Q ss_pred HHhCCccCCeEEEEEEeCC-cccccc
Q 009944 494 ALSGRKFGGNTVNAFYYPE-DKYFNK 518 (522)
Q Consensus 494 ~lng~~~~Gr~l~v~~~~~-~~~~~~ 518 (522)
.|||..|+|++|.|.|+.. .+|..+
T Consensus 83 ~lng~~~~gr~l~v~~a~~~~~~~~~ 108 (112)
T 2dit_A 83 TLDGRWFGGRQITAQAWDGTTDYQSG 108 (112)
T ss_dssp HSTTCEETTEECEEEECCSCCCSSCC
T ss_pred HcCCCEECCcEEEEEEeCCCCCcccC
Confidence 9999999999999999876 455443
No 206
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.57 E-value=3.5e-15 Score=149.62 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=60.9
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|.++|++||.|+.|.|+.+..++.. +|||||+|.+.++|.+||+.|||..|+|++|.|.|+...
T Consensus 117 ~~L~~~F~~~G~I~~v~i~~d~~tg~~---kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 117 SKLRREFEVYGPIKRIHMVYSKRSGKP---RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHHHHHHHcCCeeEEEeeccCCCCCc---cceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 499999999999999999998777765 689999999999999999999999999999999998753
No 207
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.7e-14 Score=117.34 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceE-EEEEEcChHHHHHHHHHHcCCccCC--eEEEEEEcc
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY-GFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRAT 372 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~ 372 (522)
.|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|.|.|+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4789999999999999999999999999998752 276 9999999999999999999999977 699999998
Q ss_pred CCC
Q 009944 373 ASS 375 (522)
Q Consensus 373 ~~~ 375 (522)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 754
No 208
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=3.6e-15 Score=121.15 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeE-----EE
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT-----LT 367 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~-----l~ 367 (522)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4578999999999999999999999999999998765 89999999999999999999999999988 77
Q ss_pred EEEccC
Q 009944 368 VRRATA 373 (522)
Q Consensus 368 v~~~~~ 373 (522)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 776654
No 209
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=1.3e-14 Score=111.63 Aligned_cols=84 Identities=46% Similarity=0.825 Sum_probs=71.8
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceE
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~ 251 (522)
...++|||+|||+.+|+++|+++|.+||.+.+... .++..|..+.+..++|||||+|.+.++|.+|+.+++..|.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~-~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhccccc-CCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 45689999999999999999999999965443211 12335889999999999999999999999999999999999999
Q ss_pred EEecC
Q 009944 252 RVRRP 256 (522)
Q Consensus 252 ~v~~~ 256 (522)
+|++|
T Consensus 83 ~V~rp 87 (87)
T 2hzc_A 83 KIRRP 87 (87)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99863
No 210
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.8e-15 Score=115.38 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=67.6
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-Hh--cCceecC
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-AL--DGIIFEG 248 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~--~~~~~~g 248 (522)
.+.++|||+|||+.+|+++|+++|.+||. |.++.+...+|||||+|.+.++|..|+ .+ ++..|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGK------------VTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45679999999999999999999999997 677777778999999999999999999 44 5788999
Q ss_pred ceEEEecCCCC
Q 009944 249 VAVRVRRPTDY 259 (522)
Q Consensus 249 ~~~~v~~~~~~ 259 (522)
++|.|.+++..
T Consensus 81 r~l~V~~a~~~ 91 (101)
T 2cq1_A 81 QPIYIQYSNHK 91 (101)
T ss_dssp EECEEEECSCS
T ss_pred cEEEEEEcCcc
Confidence 99999997654
No 211
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=1.2e-14 Score=112.00 Aligned_cols=74 Identities=18% Similarity=0.344 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCc--cCCeEEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK--MGDKTLTVR 369 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~--~~g~~l~v~ 369 (522)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ ++|.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45579999999999999999999999999999999874 68999999999999983 56654 569999999
Q ss_pred EccCC
Q 009944 370 RATAS 374 (522)
Q Consensus 370 ~~~~~ 374 (522)
++.++
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 99764
No 212
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=9e-15 Score=115.79 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=67.2
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcC--ceecC
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG--IIFEG 248 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~--~~~~g 248 (522)
.+.++|||+|||+.+|+++|+++|.+||. |..+.+...+|||||+|.+.++|.+|+ .|++ ..|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGT------------ICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34679999999999999999999999997 677777778999999999999999999 4654 56999
Q ss_pred ceEEEecCCCCC
Q 009944 249 VAVRVRRPTDYN 260 (522)
Q Consensus 249 ~~~~v~~~~~~~ 260 (522)
++|.|.+++...
T Consensus 81 r~l~V~~a~~~~ 92 (104)
T 1wex_A 81 QQAFFNYSTSKR 92 (104)
T ss_dssp SBCEEEECSSSS
T ss_pred EEEEEEEccCcc
Confidence 999999976543
No 213
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.8e-15 Score=116.99 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=68.4
Q ss_pred cccceeEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcC--ceec
Q 009944 172 RHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG--IIFE 247 (522)
Q Consensus 172 ~~~~~v~v~nlp~-~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~--~~~~ 247 (522)
.+.++|||+|||+ .+|+++|+++|.+||. |.++.+...+|||||+|.+.++|..|+ .|++ ..|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGV------------ISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSC------------EEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 3578999999999 9999999999999997 788888888999999999999999999 5765 5699
Q ss_pred CceEEEecCCCCC
Q 009944 248 GVAVRVRRPTDYN 260 (522)
Q Consensus 248 g~~~~v~~~~~~~ 260 (522)
|++|.|.++..+.
T Consensus 81 Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 81 GKPVRVHLSQKYK 93 (102)
T ss_dssp TEECEEEEECCCT
T ss_pred CcEEEEEECCCCC
Confidence 9999999876543
No 214
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.55 E-value=4.3e-15 Score=121.02 Aligned_cols=85 Identities=16% Similarity=0.261 Sum_probs=68.4
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
.....++|||+|||+.+|+++|+++|..||.|..+. ++.+...+.++|||||+|.+.++|++|+ .|++..|.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK------VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEE------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 344568999999999999999999999999854210 0111123456799999999999999999 799999999
Q ss_pred ceEEEecCCCCC
Q 009944 249 VAVRVRRPTDYN 260 (522)
Q Consensus 249 ~~~~v~~~~~~~ 260 (522)
+.|+|.++....
T Consensus 95 ~~l~V~~a~~~~ 106 (115)
T 2cpz_A 95 KRLKVQLKRSKN 106 (115)
T ss_dssp EECEEECCCCSC
T ss_pred EEEEEEEcCCCC
Confidence 999999876553
No 215
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=113.99 Aligned_cols=78 Identities=21% Similarity=0.277 Sum_probs=68.2
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+.+|+++|+++|.+||.| ...+.++.++|||||+|.+.++|++|+ .|++..|.|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v-----------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSV-----------PLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCC-----------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCE-----------EEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3446799999999999999999999999975 134456789999999999999999999 7999999999
Q ss_pred eEEEecCCCC
Q 009944 250 AVRVRRPTDY 259 (522)
Q Consensus 250 ~~~v~~~~~~ 259 (522)
.|.|.++...
T Consensus 85 ~l~V~~a~~~ 94 (97)
T 2e5j_A 85 TLRVALARQQ 94 (97)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999986543
No 216
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.7e-14 Score=112.96 Aligned_cols=78 Identities=27% Similarity=0.381 Sum_probs=67.5
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec----CCCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~----~~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
.....++|||+|||+.+|+++|+++|..||. |..+.+. .++|||||+|.+.++|.+|+ .|++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGP------------CKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR 78 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSC------------EEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCC------------EeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3455789999999999999999999999997 4444443 36799999999999999999 59999
Q ss_pred eecCceEEEecCCCC
Q 009944 245 IFEGVAVRVRRPTDY 259 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~ 259 (522)
.|.|+.|+|.++...
T Consensus 79 ~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 79 KILGKEVKVNWATTP 93 (103)
T ss_dssp EETTEEEEEEECCCT
T ss_pred CcCCCeEEEEECCCC
Confidence 999999999987654
No 217
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.8e-15 Score=119.07 Aligned_cols=76 Identities=28% Similarity=0.433 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCC---CCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT---GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~---g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (522)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++||+.|+ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3457899999999999999999999999999 888887766 7999999999999999999999983 245555544
Q ss_pred EE
Q 009944 369 RR 370 (522)
Q Consensus 369 ~~ 370 (522)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 218
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.7e-14 Score=114.18 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=72.0
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
......++|||+|||..+|+++|+++|..||. |..+.+...+|||||+|.+.++|.+|+ .|++..|.
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ------------IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34456789999999999999999999999997 778888878999999999999999999 79999999
Q ss_pred CceEEEecCCCCC
Q 009944 248 GVAVRVRRPTDYN 260 (522)
Q Consensus 248 g~~~~v~~~~~~~ 260 (522)
|+.|+|.+++...
T Consensus 88 g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 88 GHVVKCYWGKESP 100 (109)
T ss_dssp TEECEEECCCCCC
T ss_pred CcEEEEEecCCCC
Confidence 9999999976543
No 219
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=1.2e-14 Score=116.19 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=64.9
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHH-HhhcCCCCCCCCceEEEEe--cCCCcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g-~~~~~~~~~~~~~v~~~~~--~~~~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
....+|||+|||+.+|+++|+++|.+|| .| ..+.+ ..++|||||+|.+.++|++|+ .|||..|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v------------~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLET------------TFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCC------------SEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCee------------EEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3457999999999999999999999999 63 33333 468999999999999999999 69999999
Q ss_pred CceEEEecCC
Q 009944 248 GVAVRVRRPT 257 (522)
Q Consensus 248 g~~~~v~~~~ 257 (522)
|+.|+|.++.
T Consensus 94 Gr~i~V~~a~ 103 (111)
T 2jvr_A 94 GSVITVERDD 103 (111)
T ss_dssp TEEEEEEESC
T ss_pred CeEEEEEECC
Confidence 9999999754
No 220
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=111.62 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=67.5
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHH-h-cCceecC
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-L-DGIIFEG 248 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~-~-~~~~~~g 248 (522)
....++|||+|||..+|+++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+. | ++..+.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~------------i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGE------------IRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCC------------EeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 345689999999999999999999999987 7778887889999999999999999994 8 9999999
Q ss_pred ceEEEecC
Q 009944 249 VAVRVRRP 256 (522)
Q Consensus 249 ~~~~v~~~ 256 (522)
++|+|.|+
T Consensus 77 ~~l~v~~a 84 (85)
T 2ytc_A 77 RRLNVKWG 84 (85)
T ss_dssp EECCEEEC
T ss_pred CEEEEEec
Confidence 99999885
No 221
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=115.61 Aligned_cols=78 Identities=28% Similarity=0.489 Sum_probs=67.3
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---cCCCcEEEEEEeCHHHHHHHH-HhcCcee
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~a~-~~~~~~~ 246 (522)
....++|||+|||+.+|+++|+++|.+||. |..+.+ ..++|||||+|.+.++|++|+ .|++..|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 86 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGA------------IRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY 86 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 345689999999999999999999999997 444443 345889999999999999999 7999999
Q ss_pred cCceEEEecCCCCC
Q 009944 247 EGVAVRVRRPTDYN 260 (522)
Q Consensus 247 ~g~~~~v~~~~~~~ 260 (522)
.|+.|+|.+++...
T Consensus 87 ~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 87 DGYRLRVEFPRSGR 100 (109)
T ss_dssp TTEECEEECCCCCC
T ss_pred CCeEEEEEEcccCC
Confidence 99999999876543
No 222
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.1e-14 Score=115.57 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=68.2
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|||..+|+++|+++|..||. |..+.+..++|||||+|.+.++|..|+ .|++..|.|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~------------i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGF------------ILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34689999999999999999999999997 566777789999999999999999999 79999999999
Q ss_pred EEEecCCC
Q 009944 251 VRVRRPTD 258 (522)
Q Consensus 251 ~~v~~~~~ 258 (522)
|+|.|++.
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99998653
No 223
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=1.4e-14 Score=111.48 Aligned_cols=71 Identities=24% Similarity=0.541 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM 361 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~----G-------~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~ 361 (522)
..++|||+|||..+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 34799999999999999999999999 8 8999888754 799999999999999999 9999999
Q ss_pred CCeEEEEEE
Q 009944 362 GDKTLTVRR 370 (522)
Q Consensus 362 ~g~~l~v~~ 370 (522)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 224
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=116.30 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=61.9
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|.+|.|+.+..++.+ +|+|||+|.+.++|.+||+.|||..|+|++|.|.++....
T Consensus 21 ~~L~~~F~~~G~i~~v~i~~d~~tg~~---rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 21 TFLKDMCRKYGEVEEVEILLHPRTRKH---LGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred HHHHHHHHhcCCeeEEEEEECCCCCce---eeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 499999999999999999999877765 7899999999999999999999999999999999987643
No 225
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=2.9e-15 Score=125.29 Aligned_cols=123 Identities=19% Similarity=0.195 Sum_probs=68.9
Q ss_pred EEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCccCCCCcCCCCC
Q 009944 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGE 417 (522)
Q Consensus 338 ~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 417 (522)
++|++|.+...+..|+..++|-...|+. .+.+..+ ..+....
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~-------------------------------------~~~~~~~ 47 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP-------------------------------------PPDVEGM 47 (135)
T ss_dssp ------------------------------CCSCCS-------------------------------------CSSGGGC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC-------------------------------------CCCCCCC
Confidence 5788888888899999888875554432 1111111 0001111
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
..+.|-+|+..+++ ++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|.+||+.|||
T Consensus 48 ~~l~V~nLp~~~te-------------~~L~~~F~~~G~i~~v~i~~~~~~g~~---~G~afV~F~~~~~A~~Ai~~l~g 111 (135)
T 2lea_A 48 TSLKVDNLTYRTSP-------------DTLRRVFEKYGRVGDVYIPRDRYTKES---RGFAFVRFHDKRDAEDAMDAMDG 111 (135)
T ss_dssp CCEEEECCCSSCHH-------------HHHHHHHGGGSCCSEEECCCCSSSSSC---CSCCEEECSCHHHHHHHHTTTTT
T ss_pred CEEEEeCCCCCCCH-------------HHHHHHHHhcCCEEEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHcCC
Confidence 33444445444333 499999999999999999998766654 67889999999999999999999
Q ss_pred CccCCeEEEEEEeCCcc
Q 009944 498 RKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 498 ~~~~Gr~l~v~~~~~~~ 514 (522)
..|.|++|+|.|+....
T Consensus 112 ~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 112 AVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCSSSSCCEEEECCCCC
T ss_pred CEECCEEEEEEECCCCC
Confidence 99999999999988654
No 226
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=112.18 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=65.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHH-HhcC
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDG 243 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~-~~~~ 243 (522)
....++|||+|||+.+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|+ .|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v------------~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPI------------ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 79 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCE------------EEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCe------------eEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 3456799999999999999999999999974 44443 456799999999999999999 5999
Q ss_pred ceecCceEEEecCC
Q 009944 244 IIFEGVAVRVRRPT 257 (522)
Q Consensus 244 ~~~~g~~~~v~~~~ 257 (522)
..|.|++|+|.+++
T Consensus 80 ~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 80 MELDGRRIRVSGPS 93 (95)
T ss_dssp EEETTEEEEEECCS
T ss_pred CEECCEEEEEEecC
Confidence 99999999999865
No 227
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7.6e-15 Score=118.27 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=66.9
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-Hhc--CceecC
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIFEG 248 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~--~~~~~g 248 (522)
.+.++|||+|||+.+|+++|+++|.+||. |.++.+...+|||||+|.+.++|.+|+ .++ +..|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSC------------CCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 44679999999999999999999999997 566666667999999999999999999 466 468999
Q ss_pred ceEEEecCCCCC
Q 009944 249 VAVRVRRPTDYN 260 (522)
Q Consensus 249 ~~~~v~~~~~~~ 260 (522)
++|.|.+++...
T Consensus 97 r~l~V~~a~~k~ 108 (119)
T 2ad9_A 97 QPIYIQFSNHKE 108 (119)
T ss_dssp BCCEEEECSSSS
T ss_pred eEEEEEEccCCC
Confidence 999999876543
No 228
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=3e-14 Score=111.86 Aligned_cols=75 Identities=15% Similarity=0.330 Sum_probs=66.2
Q ss_pred hhcccceeEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 170 ATRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~-~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
.....++|||+|||+ .+++++|+++|..||. |..+.+ .+|||||+|.+.++|.+|+ .+++..+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 344578999999998 9999999999999997 566666 4899999999999999999 59999999
Q ss_pred CceEEEecCCC
Q 009944 248 GVAVRVRRPTD 258 (522)
Q Consensus 248 g~~~~v~~~~~ 258 (522)
|+.|.|.+++.
T Consensus 84 g~~l~V~~a~~ 94 (97)
T 2xnq_A 84 GKKLILEVSSS 94 (97)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEecCC
Confidence 99999998654
No 229
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=119.52 Aligned_cols=78 Identities=14% Similarity=0.228 Sum_probs=66.8
Q ss_pred cccceeEEeCCCccCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEE---ecCCCcEEEEEEeCHHHHHHHH-HhcC
Q 009944 172 RHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDG 243 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~----~~f~~~g~~~~~~~~~~~~~v~~~~---~~~~~g~afV~f~~~~~a~~a~-~~~~ 243 (522)
.+.++|||+|||+.+++++|+ ++|.+||.| .++. .+.++|||||+|.+.++|..|+ .|||
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I------------~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng 94 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDI------------LDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQG 94 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCE------------EEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCe------------EEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCC
Confidence 346789999999999999876 699999984 4443 3578999999999999999999 7999
Q ss_pred ceecCceEEEecCCCCCc
Q 009944 244 IIFEGVAVRVRRPTDYNP 261 (522)
Q Consensus 244 ~~~~g~~~~v~~~~~~~~ 261 (522)
..|.|++|+|.|++....
T Consensus 95 ~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 95 YPFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCCTTSCCEEEECCCCCH
T ss_pred CEeCCCEEEEEEccCcch
Confidence 999999999999876543
No 230
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.5e-14 Score=111.67 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=68.7
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceec--C
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE--G 248 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~--g 248 (522)
...++|||+|||+.+|+++|+++|.+||. |..+.+...+|||||+|.+.++|++|+ .|++..|. |
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGS------------IRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSC------------EEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 34579999999999999999999999997 777777777999999999999999999 59999999 9
Q ss_pred ceEEEecCCCC
Q 009944 249 VAVRVRRPTDY 259 (522)
Q Consensus 249 ~~~~v~~~~~~ 259 (522)
+.|.|.++...
T Consensus 83 ~~l~V~~a~~~ 93 (97)
T 1why_A 83 RRLRVDFAKSG 93 (97)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEECCCC
Confidence 99999987654
No 231
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=3.8e-14 Score=115.97 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=65.5
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHH-Hhc
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALD 242 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~-~~~ 242 (522)
.....++|||+|||+++|+++|+++|..||. |..+.+ +.++|||||+|.+.++|++|+ .|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 103 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGN------------VISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN 103 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCE------------EEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC
Confidence 3456789999999999999999999999997 444443 456899999999999999999 699
Q ss_pred CceecCceEEEecC
Q 009944 243 GIIFEGVAVRVRRP 256 (522)
Q Consensus 243 ~~~~~g~~~~v~~~ 256 (522)
+..|.|+.|+|.++
T Consensus 104 g~~~~g~~l~V~~a 117 (118)
T 2khc_A 104 GFQVGTKRLKVQLK 117 (118)
T ss_dssp CCEETTEECCEEEC
T ss_pred CCEECCEEEEEEec
Confidence 99999999999875
No 232
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1e-14 Score=115.24 Aligned_cols=77 Identities=29% Similarity=0.480 Sum_probs=69.6
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+.+|+++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGK------------AGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCC------------CSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCC------------eEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 345679999999999999999999999987 667777788999999999999999999 7999999999
Q ss_pred eEEEecCCCC
Q 009944 250 AVRVRRPTDY 259 (522)
Q Consensus 250 ~~~v~~~~~~ 259 (522)
+|+|.++...
T Consensus 80 ~l~v~~a~~~ 89 (99)
T 2cpj_A 80 QLRVRFACHS 89 (99)
T ss_dssp CCEEEESSCC
T ss_pred eEEEEEcCCC
Confidence 9999987654
No 233
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.4e-14 Score=110.28 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=66.0
Q ss_pred ccceeEEeCCCccCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEecCC---CcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 173 HARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYINHE---KKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~----~~f~~~g~~~~~~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
..++|||+|||+.+++++|+ ++|.+||. |..+.+... +|||||+|.+.++|.+|+ .||+.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~------------v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGK------------VKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC------------EEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCc------------EEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999999999999 99999997 566665433 899999999999999999 59999
Q ss_pred eecCceEEEecCCCC
Q 009944 245 IFEGVAVRVRRPTDY 259 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~ 259 (522)
.|.|++|+|.+++..
T Consensus 76 ~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 76 KIGSKKILVSLATGA 90 (96)
T ss_dssp EETTEEEEEEECCCS
T ss_pred EECCeEEEEEEcCCC
Confidence 999999999987543
No 234
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=3.9e-14 Score=115.85 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
...++|||+|| .+++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34578999996 69999999999999999999886 46799999999999999999999999999999999999
Q ss_pred cCCC
Q 009944 372 TASS 375 (522)
Q Consensus 372 ~~~~ 375 (522)
.++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
No 235
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=114.82 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=71.3
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|||+.+|+++|+++|..||.|.... ...+...+.++|||||+|.+.++|..|+ .|++..|.|+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP------IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC------CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE------EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3468999999999999999999999999974321 2455557888999999999999999999 69999999999
Q ss_pred EEEecCCCCC
Q 009944 251 VRVRRPTDYN 260 (522)
Q Consensus 251 ~~v~~~~~~~ 260 (522)
|.|.++....
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 9999976543
No 236
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-13 Score=114.36 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=67.8
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHH-Hhc
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALD 242 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~-~~~ 242 (522)
.....++|||+|||..+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|+ .|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i------------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 105 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPI------------ESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN 105 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCE------------EEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999984 33333 345899999999999999999 599
Q ss_pred CceecCceEEEecCCCCC
Q 009944 243 GIIFEGVAVRVRRPTDYN 260 (522)
Q Consensus 243 ~~~~~g~~~~v~~~~~~~ 260 (522)
+..|.|+.|+|.++....
T Consensus 106 g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 106 GFNILNKRLKVALAASGH 123 (139)
T ss_dssp TEECSSCEEEEEESSCCC
T ss_pred CCEECCeEEEEEECCCCC
Confidence 999999999999876543
No 237
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.9e-14 Score=114.00 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=66.4
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHHHhcCcee
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGIIF 246 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~~~~~~ 246 (522)
...++|||+|||+++|+++|+++|.+||.| .++.+ +.++|||||+|.+.++|..|+.+++..|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v------------~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~ 76 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQV------------LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 76 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCE------------EEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCE------------EEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEE
Confidence 346799999999999999999999999974 44443 5578999999999999999999999999
Q ss_pred cCceEEEecCCCC
Q 009944 247 EGVAVRVRRPTDY 259 (522)
Q Consensus 247 ~g~~~~v~~~~~~ 259 (522)
.|+.|.|.+...+
T Consensus 77 ~gr~l~V~~~~~~ 89 (103)
T 1s79_A 77 KETDLLILFKDDY 89 (103)
T ss_dssp TTTTCEEEEHHHH
T ss_pred CCEEEEEEEchHH
Confidence 9999999876543
No 238
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8e-14 Score=110.06 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=66.9
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHH--HHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCcee
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQV--MTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~--g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~ 246 (522)
.....++|||+|||+.+|+++|+++|.+| |. |..+.+ .+|||||+|.+.++|.+|+ .|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~------------v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA------------VERVKK--IRDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcc------------eEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 34557899999999999999999999999 65 555554 4789999999999999999 5999999
Q ss_pred cCceEEEecCCCCC
Q 009944 247 EGVAVRVRRPTDYN 260 (522)
Q Consensus 247 ~g~~~~v~~~~~~~ 260 (522)
.|+.|+|.+++...
T Consensus 77 ~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 77 DGSPIEVTLAKPVD 90 (99)
T ss_dssp TTEEEEEECCCCCC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999876543
No 239
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.7e-14 Score=111.83 Aligned_cols=79 Identities=24% Similarity=0.382 Sum_probs=68.1
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec----CCCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~----~~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
.....++|||+|||+.+|+++|+++|..||. |..+.+. .++|||||+|.+.++|.+|+ .|++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~------------v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGK------------ILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSC------------EEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3455789999999999999999999999997 5555543 34899999999999999999 69999
Q ss_pred eecCceEEEecCCCCC
Q 009944 245 IFEGVAVRVRRPTDYN 260 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~~ 260 (522)
.|.|+.|.|.++....
T Consensus 79 ~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 79 VVEGRKIEVNNATARV 94 (103)
T ss_dssp EETTEECEEEECCSSC
T ss_pred EECCEEEEEEEcccCC
Confidence 9999999999876543
No 240
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=6.3e-15 Score=109.94 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=63.0
Q ss_pred eeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEEEec
Q 009944 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255 (522)
Q Consensus 176 ~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~v~~ 255 (522)
+|||+|||+.+|+++|+++|.+||.|....+ +.+...+.++|||||+|.+.++|++|+++++..|.|++|.|++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML------MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC------CBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEE------EecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 5899999999999999999999998543221 2222245678999999999999999999999999999999986
Q ss_pred C
Q 009944 256 P 256 (522)
Q Consensus 256 ~ 256 (522)
+
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 3
No 241
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=7.8e-14 Score=108.00 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=66.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+.+|+++|+++|.+||. |..+.+. ++||||+|.+.++|++|+ .|++..|.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGR------------VIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 345679999999999999999999999997 6666665 569999999999999999 5999999999
Q ss_pred eEEEecCCCC
Q 009944 250 AVRVRRPTDY 259 (522)
Q Consensus 250 ~~~v~~~~~~ 259 (522)
.|+|.++...
T Consensus 72 ~l~v~~a~~~ 81 (90)
T 2dnp_A 72 RINVELSTKG 81 (90)
T ss_dssp ECEEEESCCC
T ss_pred EEEEEECCCC
Confidence 9999987654
No 242
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=109.04 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=66.7
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|||..+|+++|+++|.+||. |..+.+. +|||||+|.+.++|++|+ .|++..|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGK------------VLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSC------------EEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 34679999999999999999999999997 5556555 899999999999999999 79999999999
Q ss_pred EEEecCCCCC
Q 009944 251 VRVRRPTDYN 260 (522)
Q Consensus 251 ~~v~~~~~~~ 260 (522)
|+|.++....
T Consensus 72 l~v~~a~~~~ 81 (90)
T 2dnq_A 72 INVEASKNKS 81 (90)
T ss_dssp CEEECSSCCC
T ss_pred EEEEECCCCC
Confidence 9999876554
No 243
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-14 Score=118.07 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=69.2
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCC--CCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCcee
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG--PGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~--~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~ 246 (522)
.....++|||+|||+.+|+++|+++|..||.|....... .+.++.+..++.++|||||+|.+.++|++|+ .|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999864100000 0001111123556899999999999999999 5999999
Q ss_pred cCceEEEecCCCCC
Q 009944 247 EGVAVRVRRPTDYN 260 (522)
Q Consensus 247 ~g~~~~v~~~~~~~ 260 (522)
.|+.|+|.+++...
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999876554
No 244
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=2.8e-14 Score=114.29 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=66.0
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
.....++|||+|||..+|+++|+++|.+||.| ..+.+. +|||||+|.+.++|++|+ .|+|..|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i------------~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPM------------KEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCC------------CEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCE------------EEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 44567899999999999999999999999974 444444 899999999999999999 699999999
Q ss_pred ceEEEecCCCC
Q 009944 249 VAVRVRRPTDY 259 (522)
Q Consensus 249 ~~~~v~~~~~~ 259 (522)
+.|.|.++...
T Consensus 93 ~~l~V~~a~~~ 103 (108)
T 2jvo_A 93 QPLEVVYSKLP 103 (108)
T ss_dssp EECEEESCSCC
T ss_pred eEEEEEEecCC
Confidence 99999986543
No 245
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=7.6e-14 Score=112.03 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=67.4
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC--
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG-- 248 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g-- 248 (522)
...++|||+|||+++|+++|+++|.+||. |..+.+... |||||+|.+.++|++|| .||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSC------------EEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 34679999999999999999999999997 666666655 99999999999999999 599999999
Q ss_pred ---ceEEEecCCCCC
Q 009944 249 ---VAVRVRRPTDYN 260 (522)
Q Consensus 249 ---~~~~v~~~~~~~ 260 (522)
+.|+|.++....
T Consensus 80 ~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 80 GETAYIRVKVDGPRS 94 (108)
T ss_dssp SCEEEEEEEESSCCS
T ss_pred CcceEEEEEeCCCCC
Confidence 999999876643
No 246
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.50 E-value=1.6e-14 Score=119.32 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=68.8
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecC
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 248 (522)
......++|||+|||..+|+++|+++|..||.|..+. ++.+...+.++|||||+|.+.++|.+|+++++..|.|
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 104 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRIT------ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRG 104 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEE------EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECC
Confidence 3445678999999999999999999999999853210 0111123566899999999999999999999999999
Q ss_pred ceEEEecCCCC
Q 009944 249 VAVRVRRPTDY 259 (522)
Q Consensus 249 ~~~~v~~~~~~ 259 (522)
+.|.|.+++..
T Consensus 105 ~~l~V~~a~~~ 115 (124)
T 2jwn_A 105 RTIKVLPKRTN 115 (124)
T ss_dssp EECEEEESSCC
T ss_pred eEEEEEECCCC
Confidence 99999987644
No 247
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.1e-14 Score=115.76 Aligned_cols=76 Identities=21% Similarity=0.153 Sum_probs=69.3
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+.+|+++|+++|.+||. |..+.+..++|||||+|.+.++|+.|+ .||+..|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGS------------LGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 345679999999999999999999999997 777888889999999999999999999 6999999999
Q ss_pred eEEEecCCC
Q 009944 250 AVRVRRPTD 258 (522)
Q Consensus 250 ~~~v~~~~~ 258 (522)
.|.|.|+..
T Consensus 75 ~l~V~~a~~ 83 (111)
T 1whx_A 75 PLYLEWAPI 83 (111)
T ss_dssp BCEEEEEET
T ss_pred EEEEEECCC
Confidence 999998654
No 248
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.50 E-value=8.6e-14 Score=113.24 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=68.1
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHH-Hhc
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALD 242 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~-~~~ 242 (522)
.....++|||+|||..+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|++|+ .|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI------------SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCE------------EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34457899999999999999999999999974 44433 344799999999999999999 699
Q ss_pred CceecCceEEEecCCCCCc
Q 009944 243 GIIFEGVAVRVRRPTDYNP 261 (522)
Q Consensus 243 ~~~~~g~~~~v~~~~~~~~ 261 (522)
+..|.|+.|.|.++.....
T Consensus 79 g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 79 GQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp TCEETTEECEEEESSCCCC
T ss_pred CCEECCEEEEEEEccCCCC
Confidence 9999999999999776543
No 249
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-14 Score=116.13 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=67.1
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
......++|||+|||..+|+++|+++|.+||.|.... +....+.++|||||+|.+.++|++|+ .|++..|.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--------i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE--------IIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEE--------ECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEE--------EEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4455678999999999999999999999999854211 10112346899999999999999999 59999999
Q ss_pred CceEEEecCCC
Q 009944 248 GVAVRVRRPTD 258 (522)
Q Consensus 248 g~~~~v~~~~~ 258 (522)
|+.|.|.+++.
T Consensus 96 g~~l~V~~a~~ 106 (109)
T 2err_A 96 GRKIEVNNATA 106 (109)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEECCC
Confidence 99999998654
No 250
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.1e-14 Score=111.02 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=66.0
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE---ecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~---~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
+.++|||+|||+.+|+++|+++|..||.|..+. ++.+.. ++.++|||||+|.+.++|++|+ .|++..|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCT------ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467999999999999999999999999853210 011111 2256799999999999999999 599999999
Q ss_pred ceEEEecCCCCC
Q 009944 249 VAVRVRRPTDYN 260 (522)
Q Consensus 249 ~~~~v~~~~~~~ 260 (522)
+.|.|.++....
T Consensus 78 ~~l~V~~a~~~~ 89 (98)
T 2cpf_A 78 HKLEVRISERAT 89 (98)
T ss_dssp EECEEECSSCSS
T ss_pred eEEEEEEccCCC
Confidence 999999876543
No 251
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=6.2e-14 Score=111.25 Aligned_cols=81 Identities=11% Similarity=0.205 Sum_probs=70.4
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHHHhcCCceEEEEeeCCCC--CCcceEEEEEEcChHHHHHHHHHHcCCc
Q 009944 293 GPDRVFVGGL--PYYFT--------ETQIKELLESFGTLHGFDLVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGLK 360 (522)
Q Consensus 293 ~~~~l~v~nL--p~~~t--------~~~l~~~F~~~G~i~~v~~~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~ 360 (522)
++++|.|.|+ |..+. +++|+++|++||.|..|.|+++..+ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 33333 3799999999999999999988654 3679999999999999999999999999
Q ss_pred cCCeEEEEEEccC
Q 009944 361 MGDKTLTVRRATA 373 (522)
Q Consensus 361 ~~g~~l~v~~~~~ 373 (522)
|+|+.|.|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999853
No 252
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=5.4e-14 Score=112.98 Aligned_cols=79 Identities=13% Similarity=0.275 Sum_probs=64.1
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHHHhc
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALD 242 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~~ 242 (522)
......++|||+|||..+|+++|+++|..||. |..+.+ +.++|||||+|.+.++|.+|++..
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~------------i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGE------------VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCC------------eEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 44556789999999999999999999999997 444443 556899999999999999999766
Q ss_pred CceecCceEEEecCCCC
Q 009944 243 GIIFEGVAVRVRRPTDY 259 (522)
Q Consensus 243 ~~~~~g~~~~v~~~~~~ 259 (522)
+..|.|+.|.|.++...
T Consensus 88 ~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 88 RHELDSKTIDPKVAFPR 104 (109)
T ss_dssp CEEETTEEEEEEECCCC
T ss_pred CCcCCCEEEEEEEccCC
Confidence 79999999999986544
No 253
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-13 Score=110.73 Aligned_cols=86 Identities=19% Similarity=0.278 Sum_probs=73.6
Q ss_pred CCCcceEEEeeCCCCcCcCCChHHHHHHHHHHH---HHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHH
Q 009944 416 GETLAKVLCLTEAITADALADDEEYEEILEDMR---EECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 492 (522)
Q Consensus 416 ~~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~---~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai 492 (522)
....+.|.+|+..++++ +|. ++|++||.|..|.|+++..++.....+|+|||+|.+.++|.+||
T Consensus 14 ~~~~l~V~nLp~~~~~~-------------~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai 80 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADP-------------EVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAI 80 (111)
T ss_dssp CSSCEEEEEECTTTCCH-------------HHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHH-------------HHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHH
Confidence 34566777788777765 888 99999999999999998766544445689999999999999999
Q ss_pred HHHhCCccCCeEEEEEEeCCcc
Q 009944 493 NALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 493 ~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
+.|||..|+|++|+|.|+....
T Consensus 81 ~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 81 QCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHTTEEETTEEEEEESCCCCS
T ss_pred HHhCCCEECCEEEEEEeccccc
Confidence 9999999999999999988754
No 254
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-14 Score=111.15 Aligned_cols=77 Identities=19% Similarity=0.424 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 293 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
..++|||+|||..+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4579999999999999999999999999999999864 689999999999999864321 345699999999998
Q ss_pred CCCC
Q 009944 373 ASSG 376 (522)
Q Consensus 373 ~~~~ 376 (522)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 255
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.50 E-value=3.5e-14 Score=109.23 Aligned_cols=75 Identities=15% Similarity=0.376 Sum_probs=64.7
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHHHhcC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDG 243 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~~~ 243 (522)
.....++|||+|||+.+|+++|+++|.+||.| ..+.+ +.++|||||+|.+.++|.+|+++++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~ 74 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEV------------VDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 74 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCE------------EEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCE------------EEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC
Confidence 34567899999999999999999999999974 33333 4558999999999999999998899
Q ss_pred ceecCceEEEecC
Q 009944 244 IIFEGVAVRVRRP 256 (522)
Q Consensus 244 ~~~~g~~~~v~~~ 256 (522)
..|.|+.|.|+++
T Consensus 75 ~~~~g~~i~v~~A 87 (87)
T 3s7r_A 75 HRLDGRVIDPKKA 87 (87)
T ss_dssp EEETTEEEEEEEC
T ss_pred CEECCEEEEEEeC
Confidence 9999999999863
No 256
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.49 E-value=3.6e-14 Score=110.30 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=66.1
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCC--eEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHH
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGT--LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL 495 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~--I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~l 495 (522)
..+.|-+|+..++++ +|+++|++||. |.+|.|++++.+|.+ +|+|||+|.+.++|.+|++.|
T Consensus 10 ~tlfV~nL~~~~tee-------------~L~~~F~~~G~i~v~~v~i~~d~~tg~s---rG~aFV~f~~~~~A~~Ai~~l 73 (95)
T 2lkz_A 10 DTIILRNIAPHTVVD-------------SIMTALSPYASLAVNNIRLIKDKQTQQN---RGFAFVQLSSAMDASQLLQIL 73 (95)
T ss_dssp CEEEEESCCTTCCHH-------------HHHHHSTTTCCCCGGGEECCCCSSSSSC---SSEEEEECSSSHHHHHHHHHH
T ss_pred CEEEEeCCCCcCCHH-------------HHHHHHHhhCCccEEEEEEEecCCCCCC---ceEeEEEECCHHHHHHHHHHh
Confidence 344555566555554 99999999995 678999999888765 789999999999999999999
Q ss_pred hCC----ccCCeEEEEEEeCC
Q 009944 496 SGR----KFGGNTVNAFYYPE 512 (522)
Q Consensus 496 ng~----~~~Gr~l~v~~~~~ 512 (522)
||. .|+|++|.|.|+..
T Consensus 74 ng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 74 QSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HSSSSCEEETTEEEEEEECCC
T ss_pred cCCCCCceECCEEEEEEEccC
Confidence 997 48999999999863
No 257
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-14 Score=115.69 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=67.9
Q ss_pred hcccceeEEeCCCcc-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-Hhc--Ccee
Q 009944 171 TRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIF 246 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~--~~~~ 246 (522)
..+.++|||+|||++ +|+++|+++|.+||. |.++.+..++|||||+|.+.++|..|+ .|+ +..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGK------------IKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 445789999999998 999999999999997 666777788999999999999999999 564 5679
Q ss_pred cCceEEEecCCCCC
Q 009944 247 EGVAVRVRRPTDYN 260 (522)
Q Consensus 247 ~g~~~~v~~~~~~~ 260 (522)
.|++|.|.++..+.
T Consensus 90 ~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 90 QGRCVKVDLSEKYK 103 (112)
T ss_dssp SSSCCEEEEECSCS
T ss_pred CCEEEEEEECcccc
Confidence 99999999876543
No 258
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2e-14 Score=113.36 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=68.6
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|||+.+|+++|+++|..||.|... ..+.+...+.++|||||+|.+.++|++|+ .|++..|.|+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTT------CEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccce------EEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 345789999999999999999999999987532 23444455677899999999999999999 79999999999
Q ss_pred EEEecCCC
Q 009944 251 VRVRRPTD 258 (522)
Q Consensus 251 ~~v~~~~~ 258 (522)
|+|.++..
T Consensus 87 l~V~~a~~ 94 (98)
T 2cqp_A 87 VKLVLGSG 94 (98)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 99998653
No 259
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=2e-13 Score=108.65 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=66.4
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|||+.+|+++|+++|.+||. |..+.+. ++||||+|.+.++|++|+ .|++..|.|+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGK------------LERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 34679999999999999999999999997 5566554 679999999999999999 59999999999
Q ss_pred EEEecCCCCC
Q 009944 251 VRVRRPTDYN 260 (522)
Q Consensus 251 ~~v~~~~~~~ 260 (522)
|.|.++....
T Consensus 75 l~v~~a~~~~ 84 (103)
T 2dgu_A 75 IEIVFAKPPD 84 (103)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999976554
No 260
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.49 E-value=4.3e-14 Score=108.75 Aligned_cols=66 Identities=12% Similarity=0.342 Sum_probs=59.6
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+..+
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 21 AAIAAAFAPFGRISDARVVKDMATGKS---KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 499999999999999999998766654 789999999999999999999999999999999998753
No 261
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8e-14 Score=109.21 Aligned_cols=67 Identities=19% Similarity=0.312 Sum_probs=61.7
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|+|.|+.+..
T Consensus 20 ~~l~~~f~~~G~v~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 20 DMLRGIFEPFGKIDNIVLMKDSDTGRS---KGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HHHHHHHTTTSCEEEEEEECCSSSCCC---CSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred HHHHHHHHhcCCEeEEEEeecCCCCce---eeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 499999999999999999998877654 7899999999999999999999999999999999998754
No 262
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-13 Score=111.55 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=67.7
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHH-Hhc-
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALD- 242 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~-~~~- 242 (522)
....++|||+|||+.+|+++|+++|..||. |..+.+ +.++|||||+|.+.++|.+|+ .++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~ 79 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGD------------LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASL 79 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhcc
Confidence 345689999999999999999999999997 455544 456899999999999999999 698
Q ss_pred -----CceecCceEEEecCCCCC
Q 009944 243 -----GIIFEGVAVRVRRPTDYN 260 (522)
Q Consensus 243 -----~~~~~g~~~~v~~~~~~~ 260 (522)
+..|.|+.|.|.++....
T Consensus 80 ~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 80 EAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp TTTTCCEESSSCEEEEECCCCCC
T ss_pred ccccCCcEEcCEEEEEEECCCCc
Confidence 999999999999876543
No 263
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=5e-14 Score=110.36 Aligned_cols=76 Identities=30% Similarity=0.468 Sum_probs=65.7
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHH-HhcC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDG 243 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~-~~~~ 243 (522)
.....++|||+|||+.+++++|+++|..||. |..+.+ +.++|||||+|.+.++|.+|+ .|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~------------i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 79 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGP------------LTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG 79 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 3455689999999999999999999999997 444444 345799999999999999999 5999
Q ss_pred ceecCceEEEecCC
Q 009944 244 IIFEGVAVRVRRPT 257 (522)
Q Consensus 244 ~~~~g~~~~v~~~~ 257 (522)
..|.|+.|.|.+++
T Consensus 80 ~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 80 IRLYGRPINVSGPS 93 (95)
T ss_dssp CEETTEECEEECCC
T ss_pred CEECCCEEEEEEcC
Confidence 99999999999864
No 264
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=9.7e-14 Score=109.81 Aligned_cols=77 Identities=18% Similarity=0.344 Sum_probs=66.5
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
....++|||+|||+.+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|+ .|++.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTV------------KDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCE------------EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCe------------EEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 3456899999999999999999999999974 44443 345699999999999999999 79999
Q ss_pred eecCceEEEecCCCC
Q 009944 245 IFEGVAVRVRRPTDY 259 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~ 259 (522)
.|.|+.|+|.++...
T Consensus 82 ~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 82 TIKENIIKVAISNSG 96 (100)
T ss_dssp ESSSCEEEEEECCCC
T ss_pred EECCEEEEEEECCCC
Confidence 999999999986644
No 265
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=113.95 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=67.8
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+.+|+++|+++|.+||.|. +.....+..+|||||+|.+.++|++|+ .|++..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~----------~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----------VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE----------CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE----------EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 44578999999999999999999999998752 222245678999999999999999999 5999999999
Q ss_pred eEEEecCCCC
Q 009944 250 AVRVRRPTDY 259 (522)
Q Consensus 250 ~~~v~~~~~~ 259 (522)
.|+|.++...
T Consensus 82 ~l~v~~a~~~ 91 (101)
T 2fc9_A 82 AIRLELQGPR 91 (101)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEcCCC
Confidence 9999987654
No 266
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=107.74 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=59.0
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|+|.|+.
T Consensus 31 ~~l~~~f~~~G~v~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 31 NDLYRIFSKYGKVVKVTIMKDKDTRKS---KGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHHHHHTTTTSCEEEEEECCCSSSCCC---TTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCc---ccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 499999999999999999998876654 6889999999999999999999999999999999873
No 267
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=109.28 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=62.1
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|.|++|.|.|+....-
T Consensus 23 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 23 EDLEKLFSAYGPLSELHYPIDSLTKKP---KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp HHHHHHHHTTSCEEEEECCCCTTTCCC---CSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCCc---CeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 499999999999999999998877655 68999999999999999999999999999999999887543
No 268
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.48 E-value=5.8e-14 Score=107.50 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=58.3
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEe
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~ 510 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|+|.|+
T Consensus 22 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 22 KVLHAAFIPFGDITDIQIPLDYETEKH---RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHHHHHHGGGSCEEEEECCEETTTTEE---CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHhccCCEEEEEEEECCCCCcc---ccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 499999999999999999988766654 689999999999999999999999999999999986
No 269
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=2.2e-13 Score=119.30 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=65.2
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHH-HhcCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGII 245 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~-~~~~~~ 245 (522)
...++|||+|||+.+++++|+++|..||.|. .+.+ +.++|||||+|.+.++|.+|+ .|++..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~------------~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~ 153 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK------------KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP 153 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCS------------EEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE------------EEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3457999999999999999999999999753 3333 567899999999999999999 599999
Q ss_pred ecCceEEEecCCC
Q 009944 246 FEGVAVRVRRPTD 258 (522)
Q Consensus 246 ~~g~~~~v~~~~~ 258 (522)
|.|++|+|.++..
T Consensus 154 l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 154 LDGRPMDIQLVAS 166 (177)
T ss_dssp CSSSBCEEEEESS
T ss_pred ECCEEEEEEEecC
Confidence 9999999998653
No 270
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.48 E-value=6.1e-14 Score=112.11 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=66.5
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
....++|||+|||+.+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|+ .|++.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 79 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVI------------DECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 79 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCE------------EEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC
Confidence 3457899999999999999999999999974 44433 344899999999999999999 69999
Q ss_pred eecC---ceEEEecCCCCC
Q 009944 245 IFEG---VAVRVRRPTDYN 260 (522)
Q Consensus 245 ~~~g---~~~~v~~~~~~~ 260 (522)
.|.| +.|.|.++....
T Consensus 80 ~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 80 QTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp CCCTTCSSCCEEEESCSSC
T ss_pred ccCCCCCccEEEEECccCc
Confidence 9998 999999876543
No 271
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.48 E-value=2.1e-14 Score=112.60 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=66.5
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~ 251 (522)
..++|||+|||+.+|+++|+++|.+||.|... ..+.+...+.++|||||+|.+.++|++|+ .|++..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTC------CEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccce------EEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 35799999999999999999999999986432 22334345567899999999999999999 599999999999
Q ss_pred EEecCC
Q 009944 252 RVRRPT 257 (522)
Q Consensus 252 ~v~~~~ 257 (522)
+|.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 998754
No 272
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-14 Score=119.93 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=69.5
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCce
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 250 (522)
....++|||+|||+.+|+++|+++|..||.|... ..+.+..++.++|||||+|.+.++|.+||++++..|.|+.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~------~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDS------IYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTT------CEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccce------EEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 3456899999999999999999999999986431 2244445677899999999999999999999999999999
Q ss_pred EEEecCCC
Q 009944 251 VRVRRPTD 258 (522)
Q Consensus 251 ~~v~~~~~ 258 (522)
|.|.++..
T Consensus 96 i~V~~a~~ 103 (124)
T 1wel_A 96 IQVHPITK 103 (124)
T ss_dssp BEEEEECH
T ss_pred EEEEECCH
Confidence 99987653
No 273
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-14 Score=111.15 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=67.4
Q ss_pred cccceeEE--eCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCcee--
Q 009944 172 RHARRVYV--GGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF-- 246 (522)
Q Consensus 172 ~~~~~v~v--~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~-- 246 (522)
.+.++||| +||++.+|+++|+++|.+||. |..+.+..++|||||+|.+.++|++|+ .|||..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~------------v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSC------------EEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 34678999 779999999999999999997 677777778999999999999999999 6999988
Q ss_pred ---cCceEEEecCCCCC
Q 009944 247 ---EGVAVRVRRPTDYN 260 (522)
Q Consensus 247 ---~g~~~~v~~~~~~~ 260 (522)
.|++|.|.++....
T Consensus 91 ~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp TTSCEEECEEEEESCCC
T ss_pred ccCCCcEEEEEecccCc
Confidence 68899998865443
No 274
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.8e-14 Score=113.63 Aligned_cols=76 Identities=29% Similarity=0.412 Sum_probs=67.1
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHHHhcC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDG 243 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~~~ 243 (522)
.....++|||+|||..+|+++|+++|..||. |..+.+ +.++|||||+|.+.++|++|+.|++
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 88 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGK------------VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG 88 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC
Confidence 3456789999999999999999999999997 445544 5678999999999999999999999
Q ss_pred ceecCceEEEecCC
Q 009944 244 IIFEGVAVRVRRPT 257 (522)
Q Consensus 244 ~~~~g~~~~v~~~~ 257 (522)
..|.|+.|.|.++.
T Consensus 89 ~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 89 QRLLGVPIIVQASQ 102 (114)
T ss_dssp EEETTEEEEEEEHH
T ss_pred CEeCCeEEEEEecC
Confidence 99999999998754
No 275
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=107.18 Aligned_cols=76 Identities=28% Similarity=0.447 Sum_probs=66.1
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+.+|+++|+++|.+||. |..+.+. ++||||+|.+.++|.+|+ .|++..|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGP------------VIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSC------------CCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 345689999999999999999999999997 4455554 569999999999999999 6999999999
Q ss_pred eEEEecCCCCC
Q 009944 250 AVRVRRPTDYN 260 (522)
Q Consensus 250 ~~~v~~~~~~~ 260 (522)
.|+|.++....
T Consensus 73 ~l~V~~a~~~~ 83 (92)
T 2dgt_A 73 RMHVQLSTSRL 83 (92)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 99999876543
No 276
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.48 E-value=9.8e-14 Score=112.76 Aligned_cols=80 Identities=23% Similarity=0.442 Sum_probs=66.8
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE--ecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY--INHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~--~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
...++|||+|||..+|+++|+++|.+||.|.. |.-+. .+.++|||||+|.+.++|++|+ .|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISE---------VLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSE---------EEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34679999999999999999999999998532 11111 3456799999999999999999 699999999
Q ss_pred ceEEEecCCCCC
Q 009944 249 VAVRVRRPTDYN 260 (522)
Q Consensus 249 ~~~~v~~~~~~~ 260 (522)
+.|+|.+++...
T Consensus 76 ~~l~V~~a~~~~ 87 (116)
T 2fy1_A 76 KAIKVEQAKKPS 87 (116)
T ss_dssp SBCEEEECCCSS
T ss_pred EEEEEEECCCCC
Confidence 999999876544
No 277
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=4.2e-14 Score=111.02 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=68.5
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
.....++|||+|||+.+|+++|+++|..||.|. ++ ...+.++|||||+|.+.++|.+|+ .|++..|.|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~----------~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIR----------LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEEC----------CE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE----------Ee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344678999999999999999999999999753 22 456678999999999999999999 599999999
Q ss_pred ceEEEecCCCC
Q 009944 249 VAVRVRRPTDY 259 (522)
Q Consensus 249 ~~~~v~~~~~~ 259 (522)
+.|.|.++...
T Consensus 81 ~~l~v~~a~~~ 91 (96)
T 1fjc_A 81 RSVSLYYTGEK 91 (96)
T ss_dssp EEEEEEECSSS
T ss_pred eEEEEEEcCCC
Confidence 99999986554
No 278
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.9e-14 Score=110.51 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=61.4
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|+|.|+....
T Consensus 27 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 27 QSLEQVFSKYGQISEVVVVKDRETQRS---RGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HHHHHHHHHHSCCCEEEECCCSSSCSC---CSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCc---ccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 499999999999999999998776654 6899999999999999999999999999999999987654
No 279
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=1.2e-13 Score=122.83 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEccCC
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (522)
++|||+|||..+++++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..+ +..|.|+.|.|.++...
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 689999999999999999999999999999999986 5999999999999999999999865 46999999999997653
No 280
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.47 E-value=9.3e-14 Score=107.12 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=63.8
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cC-CCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NH-EKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~-~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
..++|||+|||+.+|+++|+++|.+||. |..+.+ +. .+|||||+|.+.++|.+|+ .|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGK------------IKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 70 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSC------------EEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC
Confidence 3578999999999999999999999997 444443 22 7899999999999999999 59999
Q ss_pred eecCceEEEecCC
Q 009944 245 IFEGVAVRVRRPT 257 (522)
Q Consensus 245 ~~~g~~~~v~~~~ 257 (522)
.|.|+.|.|.++.
T Consensus 71 ~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 71 QIDGQEITATAVL 83 (88)
T ss_dssp EETTEECEEEEEC
T ss_pred eECCeEEEEEECC
Confidence 9999999999754
No 281
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.47 E-value=1.4e-13 Score=107.95 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=62.1
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
++|+++|+.||.|..|.|+.+..+|.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+.....
T Consensus 17 ~~l~~~F~~~G~i~~v~i~~~~~~g~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 17 EQILDLCSNVGPVINLKMMFDPQTGRS---KGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp HHHHHHHHTTSCEEEEECCBCTTTCCB---CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCcc---ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 499999999999999999998766654 68999999999999999999999999999999999987653
No 282
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.47 E-value=7.1e-14 Score=108.06 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=66.0
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceE
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~ 251 (522)
...++|||+|||+.+|+++|+++|..||.|.... .+.+...+.++|||||+|.+.++|.+|+.+++..|.|+.|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l 77 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVT------ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 77 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEE------EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEEC
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEE
Confidence 3467999999999999999999999999743210 0111123456899999999999999999999999999999
Q ss_pred EEecCCC
Q 009944 252 RVRRPTD 258 (522)
Q Consensus 252 ~v~~~~~ 258 (522)
+|.+++.
T Consensus 78 ~V~~a~~ 84 (89)
T 3ucg_A 78 KVIPKRT 84 (89)
T ss_dssp EEEETTT
T ss_pred EEEEccC
Confidence 9998654
No 283
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=109.84 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=62.0
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+....-
T Consensus 27 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 27 KVLHAAFIPFGDITDIQIPLDYETEKH---RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp HHHHHHHTTTSCCCCEECCCCSSSCCC---SSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred HHHHHHhhccCCEEEEEEEecCCCCCc---ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 499999999999999999998777654 78999999999999999999999999999999999886543
No 284
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.2e-13 Score=107.00 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=67.5
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|| .+|+++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCC------------EEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 45679999996 8999999999999997 778888899999999999999999999 79999999999
Q ss_pred EEEecCCCC
Q 009944 251 VRVRRPTDY 259 (522)
Q Consensus 251 ~~v~~~~~~ 259 (522)
|+|.++...
T Consensus 79 l~v~~a~~~ 87 (97)
T 1x5p_A 79 LKVNIARKQ 87 (97)
T ss_dssp EEEECCSSC
T ss_pred EEEEECCCC
Confidence 999987654
No 285
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=107.66 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=60.4
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+||+ |||..|+|++|.|.|+....
T Consensus 25 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 25 TELREYFKKFGVVTEVVMIYDAEKQRP---RGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp HHHHHHHSSSSCEEEEEECCCTTTCSC---CSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCC---CceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 499999999999999999998777654 6899999999999999999 99999999999999988654
No 286
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=110.01 Aligned_cols=67 Identities=22% Similarity=0.401 Sum_probs=61.5
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+....
T Consensus 28 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 28 DSLRRVFEKYGRVGDVYIPREPHTKAP---RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHHHHHHTTTSCEEEEECCBCSSSCSB---CSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCCC---CeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 499999999999999999998876654 6889999999999999999999999999999999998654
No 287
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.8e-14 Score=110.54 Aligned_cols=75 Identities=21% Similarity=0.418 Sum_probs=64.0
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcC-ceecCce
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG-IIFEGVA 250 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~-~~~~g~~ 250 (522)
..++|||+|||+.+|+++|+++|.+||.++.. +. + .++|||||+|.+.++|++|+ .|++ ..|.|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~--------~~-~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG--------QV-L---LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS--------CE-E---EETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE--------EE-E---cCCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 45799999999999999999999999973211 11 1 36899999999999999999 6999 9999999
Q ss_pred EEEecCCCC
Q 009944 251 VRVRRPTDY 259 (522)
Q Consensus 251 ~~v~~~~~~ 259 (522)
|+|.++...
T Consensus 75 l~v~~a~~~ 83 (93)
T 2cqh_A 75 MEVDYSVSK 83 (93)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999987654
No 288
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=1.8e-14 Score=107.47 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=62.1
Q ss_pred eeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEEEec
Q 009944 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255 (522)
Q Consensus 176 ~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~v~~ 255 (522)
+|||+|||+.+|+++|+++|.+||.|....+ +.+..++.++|||||+|.+.++|.+|+++++..+.|+.|.|++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL------PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECC------CCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------EecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 5899999999999999999999998543211 2222346678999999999999999998899999999999875
No 289
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=109.56 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=61.4
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|+|.|+....
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 30 PLLWELFLQAGPVVNTHMPKDRVTGQH---QGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCBCSSSCSB---CSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCcC---CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 499999999999999999998877654 6889999999999999999999999999999999987654
No 290
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.46 E-value=1.2e-13 Score=105.15 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=60.8
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+...
T Consensus 16 ~~l~~~f~~~G~i~~~~i~~~~~~~~~---~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 16 ETLRNAFKDFPSYLSGHVMWDMQTGSS---RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp HHHHHHHTTSTTEEEEEEEECTTTCCE---EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHhcCCeeEEEEEEcCCCCCc---cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 499999999999999999988767654 789999999999999999999999999999999998764
No 291
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-14 Score=117.08 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=67.0
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHh-hcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTA-IGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~-~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 249 (522)
....++|||+|||+.+|+++|+++|..||.| ..+. ++.+ .++.++|||||+|.+.++|++||++++..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~------i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH------VLVD-NNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEE------ECCC-TTSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEE------EEEC-CCCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3456899999999999999999999999875 2211 1111 246689999999999999999997799999999
Q ss_pred eEEEecCCCC
Q 009944 250 AVRVRRPTDY 259 (522)
Q Consensus 250 ~~~v~~~~~~ 259 (522)
.|.|.++...
T Consensus 85 ~i~v~~a~~~ 94 (114)
T 2cpy_A 85 EAFVHVVTLE 94 (114)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999986543
No 292
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3.9e-13 Score=107.79 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=62.5
Q ss_pred HHHHHHhhccCCeEEEEecCC-CCCCCCCCCccEEEEEecChHhHHHHHHHH-hCCccCCeEEEEEEeCCccccc
Q 009944 445 EDMREECGKYGTLVNVVIPRP-DQNGGETPGVGKVFLEYYDAVGCATAKNAL-SGRKFGGNTVNAFYYPEDKYFN 517 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~-~~~g~~~~g~G~afV~F~~~~~A~~Ai~~l-ng~~~~Gr~l~v~~~~~~~~~~ 517 (522)
++|+++|++||.|..|.|+.+ ..++.. +|+|||+|.+.++|.+||..| ||..|+|++|.|.|+....-..
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 30 REIRELFSTFGELKTVRLPKKMTGTGAH---RGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp HHHHHHHHTTSCEEEEECCCCCSSSCSS---CSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred HHHHHHHHccCCeEEEEEecCCCCCCCc---CceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCCC
Confidence 499999999999999999988 556654 689999999999999999999 9999999999999998765443
No 293
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.46 E-value=1e-13 Score=109.47 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCC-eEEEEEEeCC
Q 009944 438 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG-NTVNAFYYPE 512 (522)
Q Consensus 438 ~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~G-r~l~v~~~~~ 512 (522)
+.+..++++|+++|++||.|..|.|+.+..+|.+ +|+|||+|.+.++|.+||+.|||..|+| ++|.|.++..
T Consensus 20 ~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~---kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 20 AKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKT---KGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp GGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEE---CSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCcc---ceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 4457788899999999999999999999877765 6899999999999999999999999999 9999999865
No 294
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=110.35 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=66.4
Q ss_pred cccceeEEeCCCccC------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEE----ecCCCcEEEEEEeCHHHHHHHH-H
Q 009944 172 RHARRVYVGGLPPLA------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVY----INHEKKFAFVEMRTVEEASNAM-A 240 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~------t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~----~~~~~g~afV~f~~~~~a~~a~-~ 240 (522)
...++|||+|||+.+ |+++|+++|.+||.| ..+. ++.++|||||+|.+.++|.+|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v------------~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKI------------TNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCE------------EEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCE------------EEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 346799999999999 889999999999984 4443 3467899999999999999999 5
Q ss_pred hcCceecCc-eEEEecCCCCC
Q 009944 241 LDGIIFEGV-AVRVRRPTDYN 260 (522)
Q Consensus 241 ~~~~~~~g~-~~~v~~~~~~~ 260 (522)
|||..|.|+ +|.|.++....
T Consensus 81 l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 81 ADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CSSEECSTTCEEEEECSCCCC
T ss_pred hCCcccCCCceEEEEEcchHh
Confidence 999999999 99999876543
No 295
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.46 E-value=6.2e-14 Score=109.12 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=65.8
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|||..+|+++|+++|.+||.|... .+....+.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~--------~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYA--------DIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEE--------EEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE--------EEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 346799999999999999999999999985321 111123446899999999999999999 59999999999
Q ss_pred EEEecCCCC
Q 009944 251 VRVRRPTDY 259 (522)
Q Consensus 251 ~~v~~~~~~ 259 (522)
|+|.++...
T Consensus 78 l~v~~a~~~ 86 (92)
T 2dgv_A 78 IDVRIDRNA 86 (92)
T ss_dssp CCCEECSCC
T ss_pred EEEEEcCCC
Confidence 999986654
No 296
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4e-13 Score=108.48 Aligned_cols=82 Identities=17% Similarity=0.296 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCC
Q 009944 291 AEGPDRVFVGGLPYYFT-----------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~~t-----------~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~ 359 (522)
....++|+|.||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34567899999944332 5899999999999999965 443 37999999999999999999999999
Q ss_pred ccCCeEEEEEEccCCCC
Q 009944 360 KMGDKTLTVRRATASSG 376 (522)
Q Consensus 360 ~~~g~~l~v~~~~~~~~ 376 (522)
.|.|+.|.|.++.++..
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999977543
No 297
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.6e-13 Score=110.85 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCeEEEcCCC--CCC---CHHHHHHHHHhcCCceEEEEeeCCC----CCCcceEEEEEEcChHHHHHHHHHHcCCccCC
Q 009944 293 GPDRVFVGGLP--YYF---TETQIKELLESFGTLHGFDLVKDRD----TGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (522)
Q Consensus 293 ~~~~l~v~nLp--~~~---t~~~l~~~F~~~G~i~~v~~~~~~~----~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (522)
++++|+|.||- .++ .+++|+++|++||.|..|.|+.+.. ++.++|+|||+|.+.++|.+|+..|||.+|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34689999993 222 3689999999999999999998754 45678999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 009944 364 KTLTVRRAT 372 (522)
Q Consensus 364 ~~l~v~~~~ 372 (522)
+.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999984
No 298
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=109.82 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=61.6
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+||+.|||..|+|++|+|.|+....
T Consensus 30 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 30 TDLQELFRPFGSISRIYLAKDKTTGQS---KGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHHHTTSTTTCCEEEEEEEECSSSCSE---EEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred HHHHHHHHhCCCeEEEEEeecCCCCce---eeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 499999999999999999998767654 7899999999999999999999999999999999987654
No 299
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=111.60 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=68.0
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCc
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 249 (522)
.....++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|++.++..|.|+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~ 96 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV------VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGR 96 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEE------EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCE
Confidence 345578999999999999999999999999853210 01111225568999999999999999996699999999
Q ss_pred eEEEecCCCCC
Q 009944 250 AVRVRRPTDYN 260 (522)
Q Consensus 250 ~~~v~~~~~~~ 260 (522)
.|.|.++....
T Consensus 97 ~l~V~~a~~~~ 107 (116)
T 1x4b_A 97 VVEPKRAVARE 107 (116)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCc
Confidence 99999876553
No 300
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=4.5e-14 Score=115.16 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=66.0
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHH---hhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceec
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~---~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 247 (522)
....++|||+|||+++|+++|+++|..||. |.... ++.+ ..++++|||||+|.+.++|++|+++++..|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~------i~~~-~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 86 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVH------FIYT-REGRQSGEAFVELESEDDVKLALKKDRESMG 86 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEE------EEEC-SSSCEEEEEEEEBSSHHHHHHHGGGTTEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEE------EEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 345688999999999999999999999987 43211 1111 2256789999999999999999999999999
Q ss_pred CceEEEecCC
Q 009944 248 GVAVRVRRPT 257 (522)
Q Consensus 248 g~~~~v~~~~ 257 (522)
|+.|+|.++.
T Consensus 87 gr~i~V~~a~ 96 (118)
T 2db1_A 87 HRYIEVFKSH 96 (118)
T ss_dssp TEEEEEEEEC
T ss_pred CeEEEEEECC
Confidence 9999998764
No 301
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.45 E-value=1.5e-13 Score=113.81 Aligned_cols=67 Identities=22% Similarity=0.370 Sum_probs=61.5
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+||+.|||..|+|++|.|.|+..++
T Consensus 61 ~~L~~~F~~~G~I~~v~i~~d~~tg~~---~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 61 RDLREVFSKYGPIADVSIVYDQQSRRS---RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp HHHHHHHTTTSCEEEEEEECCSSSSCC---CCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 399999999999999999998877654 7899999999999999999999999999999999987654
No 302
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=3.3e-14 Score=118.47 Aligned_cols=86 Identities=15% Similarity=0.271 Sum_probs=70.0
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCc----e
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI----I 245 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~----~ 245 (522)
....++|||+|||+.+|+++|+++|.+||.|...+ +.++.+..++.++|||||+|.+. +|.+|+ .|++. .
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~----v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN----VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT----EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee----EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 35568999999999999999999999999863200 11233344677899999999999 999999 79999 9
Q ss_pred ecCceEEEecCCCCCc
Q 009944 246 FEGVAVRVRRPTDYNP 261 (522)
Q Consensus 246 ~~g~~~~v~~~~~~~~ 261 (522)
|.|+.|.|.++.....
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999998776543
No 303
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=102.70 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=60.7
Q ss_pred eeEEeCCCccCcHHH----HHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 176 RVYVGGLPPLANEQA----IATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 176 ~v~v~nlp~~~t~~~----l~~~f~~~g-~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
.|||+|||+.+++++ |+++|.+|| . |+++ + .|+|||+|.+.++|+.|+ .|+|..|.|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~------------Vl~V-t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGK------------VLSI-T---GCSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCC------------EEEC-C---TTCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCe------------eEEE-e---cCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 399999999999988 558999995 7 5555 2 299999999999999999 7999999999
Q ss_pred eEEEecCCCCCc
Q 009944 250 AVRVRRPTDYNP 261 (522)
Q Consensus 250 ~~~v~~~~~~~~ 261 (522)
+|+|.+++....
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999876543
No 304
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.45 E-value=9.1e-14 Score=120.81 Aligned_cols=66 Identities=23% Similarity=0.367 Sum_probs=60.7
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|++||.|..|.|+.+..+|.. +|+|||+|.+.++|.+||..|||..|.|++|.|.|+...
T Consensus 87 ~~L~~~F~~~G~i~~v~i~~~~~~g~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 87 DEIQEKFCDYGEIKNIHLNLDRRTGFS---KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTSSE---EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred HHHHHHhhcCCCEEEEEEEecCCCCcE---eeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 499999999999999999998777654 789999999999999999999999999999999998654
No 305
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=1.3e-13 Score=108.54 Aligned_cols=77 Identities=19% Similarity=0.398 Sum_probs=67.1
Q ss_pred cccceeEEeCCCccCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEe---cCCCcEEEEEEeCHHHHHHHH-HhcC
Q 009944 172 RHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDG 243 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~----~~f~~~g~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~a~-~~~~ 243 (522)
.+.++|||+|||..+++++|+ ++|.+||. |..+.+ +.++|||||+|.+.++|..|+ .|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~------------i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQ------------ILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSC------------EEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCC------------EEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 456799999999999999999 99999997 455544 467899999999999999999 6999
Q ss_pred ceecCceEEEecCCCCC
Q 009944 244 IIFEGVAVRVRRPTDYN 260 (522)
Q Consensus 244 ~~~~g~~~~v~~~~~~~ 260 (522)
..|.|+.|.|.++....
T Consensus 74 ~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 74 FPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp CEETTEECEEEECSSCC
T ss_pred CEECCcEEEEEEccCCC
Confidence 99999999999876543
No 306
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=108.82 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=66.3
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHH-HHHhhcCCCCCCCCceEEEE-----ecCCCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVY-----INHEKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~-~g~~~~~~~~~~~~~v~~~~-----~~~~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
...++|||+|||+.+|+++|+++|.. ||.| ..+. ++.++|||||+|.+.++|.+|+ .|++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v------------~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC------------RGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTE------------EEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCe------------EEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC
Confidence 34679999999999999999999999 9984 3333 3456899999999999999999 59999
Q ss_pred e-ecCceEEEecCCCCC
Q 009944 245 I-FEGVAVRVRRPTDYN 260 (522)
Q Consensus 245 ~-~~g~~~~v~~~~~~~ 260 (522)
. |.|+.|.|.++....
T Consensus 75 ~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 75 VGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp CSSSSSCCCCCBCCCCC
T ss_pred cccCCEeEEEEEccCCC
Confidence 9 999999999876543
No 307
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=1.7e-13 Score=110.51 Aligned_cols=74 Identities=22% Similarity=0.388 Sum_probs=65.5
Q ss_pred cccceeEEeCCCcc-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 172 RHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 172 ~~~~~v~v~nlp~~-~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
...++|||+|||+. +|+++|+++|.+||. |..+.+ .+|||||+|.+.++|++|+ .|++..|.|+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGR------------VAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSC------------CSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 34579999999999 999999999999997 444555 7899999999999999999 7999999999
Q ss_pred eEEEecCCCC
Q 009944 250 AVRVRRPTDY 259 (522)
Q Consensus 250 ~~~v~~~~~~ 259 (522)
.|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (110)
T 1wf1_A 91 TLDINMAGEP 100 (110)
T ss_dssp ECCEEESCCC
T ss_pred EEEEEECCCC
Confidence 9999987643
No 308
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=107.76 Aligned_cols=64 Identities=16% Similarity=0.327 Sum_probs=58.9
Q ss_pred HHHHHHhhccCCeEE--------EEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 445 EDMREECGKYGTLVN--------VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~--------v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
++|+++|++||.|.. |.|+.+..+|.. +|+|||+|.+.++|.+|++.|||..|+|++|+|.|+.
T Consensus 28 ~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~---~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 28 ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL---KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSE---EEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHhCCEeeccccccccEEEEecCCCCCe---eeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 499999999999999 999988767654 7899999999999999999999999999999999874
No 309
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2e-14 Score=114.95 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=66.6
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEEeCHHHHHHHHHhcCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDGI 244 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~~~~ 244 (522)
....++|||+|||+.+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|++.++.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v------------~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~ 80 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEV------------VDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPH 80 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCE------------EEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCC
Confidence 4557899999999999999999999999974 33333 34579999999999999999966999
Q ss_pred eecCceEEEecCCCCC
Q 009944 245 IFEGVAVRVRRPTDYN 260 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~~ 260 (522)
.|.|+.|.|.++....
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 81 TLDGRNIDPKPCTPRG 96 (105)
T ss_dssp EETTEEEBCCCSCCSS
T ss_pred eECCEEEEEEEccCCC
Confidence 9999999999876543
No 310
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.9e-13 Score=106.94 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=66.0
Q ss_pred hhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCc
Q 009944 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (522)
Q Consensus 170 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 249 (522)
.....++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|++|+. ++..|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~ 83 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ------VKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGR 83 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEE------EEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCe
Confidence 345578999999999999999999999999843210 01111124567999999999999999996 57899999
Q ss_pred eEEEecCCCCC
Q 009944 250 AVRVRRPTDYN 260 (522)
Q Consensus 250 ~~~v~~~~~~~ 260 (522)
.|.|.++....
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cqg_A 84 WCDCKLPNSKQ 94 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEEecCCCC
Confidence 99999876553
No 311
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=1.2e-13 Score=125.43 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc-
Q 009944 292 EGPDRVFVGGLPYYF---------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM- 361 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~---------t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~- 361 (522)
...++|||+||+..+ ++++|+++|++||.|..|.|+. ++|||||+|.+.++|+.|+++|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 345799999999998 7999999999999999999985 379999999999999999999999999
Q ss_pred -----------CCeEEEEEEccCC
Q 009944 362 -----------GDKTLTVRRATAS 374 (522)
Q Consensus 362 -----------~g~~l~v~~~~~~ 374 (522)
.|+.|.|.||...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccccCCCCEEEEEEccCC
Confidence 8999999999764
No 312
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.9e-14 Score=112.58 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=66.0
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+.+|+++|+++|..|+.+. .+.+...+.++|||||+|.+.++|++|+ .|++..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~---------~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRAR---------IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEE---------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEE---------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 44568999999999999999999999774321 1222234556899999999999999999 5999999999
Q ss_pred eEEEecCCCCC
Q 009944 250 AVRVRRPTDYN 260 (522)
Q Consensus 250 ~~~v~~~~~~~ 260 (522)
.|.|.+++...
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 2fc8_A 83 KVTLDWAKPKG 93 (102)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999976554
No 313
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=6.6e-14 Score=107.85 Aligned_cols=73 Identities=23% Similarity=0.361 Sum_probs=64.3
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCceE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~~ 251 (522)
..++|||+|||+.+++++|+++|.+| . |..+.+..++|||||+|.+.++|.+|+ .|++..+.|++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~------------v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-D------------LKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-C------------CCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-C------------eEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 45789999999999999999999999 6 344444588999999999999999999 699999999999
Q ss_pred EEecCCC
Q 009944 252 RVRRPTD 258 (522)
Q Consensus 252 ~v~~~~~ 258 (522)
+|.++..
T Consensus 71 ~V~~a~~ 77 (88)
T 1wg1_A 71 IVQLQPT 77 (88)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998643
No 314
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=109.99 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=63.1
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHHHhcCceec
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGIIFE 247 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 247 (522)
...+|||+|||+.+|+++|+++|..| .| .++.+ ++++|||||+|.+.++|++||++++..|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v------------~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 81 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RV------------DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMI 81 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CC------------CEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-Ce------------eEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 35789999999999999999999998 43 33332 56789999999999999999999999999
Q ss_pred CceEEEecCCC
Q 009944 248 GVAVRVRRPTD 258 (522)
Q Consensus 248 g~~~~v~~~~~ 258 (522)
|+.|.|..+..
T Consensus 82 gr~i~V~~a~~ 92 (109)
T 2dnn_A 82 QRYVEVSPATE 92 (109)
T ss_dssp TEEEEEEECCH
T ss_pred CeEEEEEECCc
Confidence 99999987543
No 315
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=106.63 Aligned_cols=76 Identities=25% Similarity=0.402 Sum_probs=64.4
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCc-EEEEEEeCHHHHHHHHHhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK-FAFVEMRTVEEASNAMALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g-~afV~f~~~~~a~~a~~~~~~~~~g~~ 250 (522)
...++|||+|||+.+|+++|+++|..||. |..+......| ||||+|.+.++|.+|++|++..|.|+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGP------------VASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSC------------EEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCC------------eEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 34579999999999999999999999997 44454433322 999999999999999999999999999
Q ss_pred EEEecCCCC
Q 009944 251 VRVRRPTDY 259 (522)
Q Consensus 251 ~~v~~~~~~ 259 (522)
|.|.++...
T Consensus 74 l~V~~a~~~ 82 (94)
T 2e5g_A 74 LRVRPREQK 82 (94)
T ss_dssp CCCBCSCCS
T ss_pred EEEEECCcC
Confidence 999976544
No 316
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.1e-13 Score=109.72 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=65.9
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHH-HhcCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGI 244 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~-~~~~~ 244 (522)
....++|||+|||+.+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|++|+ .|++.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i------------~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVV------------VRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCE------------EEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3456899999999999999999999999974 44433 334799999999999999999 59999
Q ss_pred eecCceEEEecCCCC
Q 009944 245 IFEGVAVRVRRPTDY 259 (522)
Q Consensus 245 ~~~g~~~~v~~~~~~ 259 (522)
.|.|+.|.|.++...
T Consensus 80 ~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 80 LLFDRPMHVKMDERA 94 (114)
T ss_dssp EETTEECEEEECSCC
T ss_pred EeCCCEEEEEEcccC
Confidence 999999999986543
No 317
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.44 E-value=1.9e-13 Score=109.63 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=58.5
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
++|+++|++||.|..|.|+.+. +|.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|++
T Consensus 44 ~~l~~~F~~~G~i~~v~i~~~~-~g~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 44 ADIQELFAEFGTLKKAAVHYDR-SGRS---LGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHTTSCEEEEEEEECT-TSCE---EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEEEECC-CCCc---ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4999999999999999999887 6554 7899999999999999999999999999999999986
No 318
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=109.49 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=60.5
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|++||.|..|.|+.+..+|.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+.+.
T Consensus 41 ~~l~~~F~~~G~i~~v~i~~~~~~g~~---~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 41 DMLRGIFEPFGRIESIQLMMDSETGRS---KGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHHHHHTTTSCEEEEEEEEETTTTEE---EEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred HHHHHHHHhcCCeEEEEEEEcCCCCcc---ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 499999999999999999988766654 789999999999999999999999999999999998754
No 319
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=8e-14 Score=110.12 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=62.4
Q ss_pred HHHHHHhhccCCeE-EEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeE----EEEEEeCCcccc
Q 009944 445 EDMREECGKYGTLV-NVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNT----VNAFYYPEDKYF 516 (522)
Q Consensus 445 ~~l~~~f~~~G~I~-~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~----l~v~~~~~~~~~ 516 (522)
++|+++|++||.|. .|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|.|+. |+|.|+......
T Consensus 24 ~~l~~~F~~~G~i~~~v~i~~~~~~g~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~~ 97 (99)
T 2div_A 24 NFISRAFATMGETVMSVKIIRNRLTGIP---AGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSGPS 97 (99)
T ss_dssp HHHHHHHHHTTCCCCEEEEEECSSSCCE---EEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCSSS
T ss_pred HHHHHHHHHhCCcceEEEEeecCCCCCc---CCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCCCC
Confidence 49999999999999 9999998877655 789999999999999999999999999999 999999876543
No 320
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.3e-13 Score=106.96 Aligned_cols=77 Identities=25% Similarity=0.377 Sum_probs=65.4
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-------CCCcEEEEEEeCHHHHHHHH-Hhc--
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-------HEKKFAFVEMRTVEEASNAM-ALD-- 242 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~-------~~~g~afV~f~~~~~a~~a~-~~~-- 242 (522)
..++|||+|||+.+|+++|+++|..||.. |..+.+. .++|||||+|.+.++|..|+ .|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~-----------v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g 75 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEG-----------VLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPG 75 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTT-----------EEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCC-----------ceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCC
Confidence 46799999999999999999999999861 3444443 67899999999999999999 585
Q ss_pred CceecCceEEEecCCCCC
Q 009944 243 GIIFEGVAVRVRRPTDYN 260 (522)
Q Consensus 243 ~~~~~g~~~~v~~~~~~~ 260 (522)
+..|.|+.|+|.++....
T Consensus 76 ~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 76 RIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp CSCBTTBCCEEEESCSSC
T ss_pred CceecCCeEEEEEcCCCC
Confidence 589999999999976543
No 321
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=107.92 Aligned_cols=68 Identities=15% Similarity=0.289 Sum_probs=61.8
Q ss_pred HHHHHHhhccCCeEEE-EecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLVNV-VIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v-~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
++|+++|++||.|..| .|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+....-
T Consensus 20 ~~l~~~F~~~G~i~~~~~i~~~~~~g~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 20 KLLYDTFSAFGVILQTPKIMRDPDTGNS---KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp HHHHHHHHTTSCBSSCCEECCCTTTCSC---CSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHhcCCeeEEEEEEEcCCCCCc---CeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 4999999999999999 99998767654 68999999999999999999999999999999999876543
No 322
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.8e-13 Score=107.02 Aligned_cols=65 Identities=15% Similarity=0.264 Sum_probs=58.9
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+ ++. .+|+|||+|.+.++|.+|++.|||..|+|++|.|.|+....
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~--~g~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 30 ERLRKAFSPFGTITSAKVMME--GGR---SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHHHTTTTTSCEEEEEEEEC--SSS---EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred HHHHHHHHhcCCEEEEEEEcC--CCC---cCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 399999999999999999987 443 37899999999999999999999999999999999987654
No 323
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=104.71 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=59.1
Q ss_pred ceeEEeCCCccC------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEE----ecCCCcEEEEEEeCHHHHHHHH-HhcC
Q 009944 175 RRVYVGGLPPLA------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVY----INHEKKFAFVEMRTVEEASNAM-ALDG 243 (522)
Q Consensus 175 ~~v~v~nlp~~~------t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~----~~~~~g~afV~f~~~~~a~~a~-~~~~ 243 (522)
++|||+|||..+ |+++|+++|.+||.| ..+. ++.++|||||+|.+.++|.+|+ .|||
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i------------~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng 69 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKI------------TNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG 69 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCE------------EEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCe------------EEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcC
Confidence 689999999999 789999999999984 4443 3467899999999999999999 6999
Q ss_pred ceecCc-eEEE
Q 009944 244 IIFEGV-AVRV 253 (522)
Q Consensus 244 ~~~~g~-~~~v 253 (522)
..|.|+ +|+|
T Consensus 70 ~~~~g~~~l~V 80 (81)
T 2krb_A 70 YKLDKQHTFRV 80 (81)
T ss_dssp CCCSSSSCCCC
T ss_pred cccCCceeEEe
Confidence 999999 8876
No 324
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=9.1e-14 Score=109.00 Aligned_cols=75 Identities=15% Similarity=0.312 Sum_probs=64.5
Q ss_pred hcccceeEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 171 TRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 171 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
..+.++|||+|||+ .+|+++|+++|.+||. |..+.+ .+|||||+|.+.++|..|+ .|++..+.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCC------------CCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 44578999999998 9999999999999997 444544 3899999999999999999 599999999
Q ss_pred ceEEEecCCCC
Q 009944 249 VAVRVRRPTDY 259 (522)
Q Consensus 249 ~~~~v~~~~~~ 259 (522)
++|.|.+++..
T Consensus 73 ~~l~V~~a~~~ 83 (96)
T 2kvi_A 73 KKLILEVSSSN 83 (96)
T ss_dssp TTBCEEEEECC
T ss_pred cEEEEEEcCcC
Confidence 99999986543
No 325
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.42 E-value=3.1e-13 Score=108.21 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=61.1
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCcc---CCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF---GGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~---~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..+ .|++|.|.|+....
T Consensus 28 ~~l~~~F~~~G~i~~v~i~~~~~~g~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 28 KDLKPLFEEFGKIYELTVLKDRFTGMH---KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp HHHHHHHHHHSCCCEEECCCCSSSCSC---CSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred HHHHHHHHhcCCeeEEEEEecCCCCCc---ceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 499999999999999999998877654 68999999999999999999999998 89999999987654
No 326
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=3.4e-14 Score=118.15 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=66.3
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHH---hhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceec
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~---~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 247 (522)
....++|||+|||+++|+++|+++|..||. |... .++.+. .++++|||||+|.+.++|++|+++++..|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v------~i~~d~-~g~srG~aFV~F~~~e~a~~Al~~~g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGV------HFIYTR-EGRQSGEAFVELGSEDDVKMALKKDRESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTE------EEEECS-SSCEEEEEEEECSSHHHHHHHHTTTEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEE------EEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence 345689999999999999999999999997 3321 112222 266789999999999999999999999999
Q ss_pred CceEEEecCC
Q 009944 248 GVAVRVRRPT 257 (522)
Q Consensus 248 g~~~~v~~~~ 257 (522)
|+.|.|.++.
T Consensus 114 gr~i~V~~a~ 123 (136)
T 2hgl_A 114 HRYIEVFKSH 123 (136)
T ss_dssp SSEEEEEECC
T ss_pred CEEEEEEECC
Confidence 9999998764
No 327
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=8.3e-14 Score=110.37 Aligned_cols=72 Identities=13% Similarity=0.259 Sum_probs=63.3
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEE
Q 009944 299 VGGLPYYFTETQIKELL------------ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (522)
Q Consensus 299 v~nLp~~~t~~~l~~~F------------~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (522)
+.||+..+++++|+++| ++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777666655 999999999999885 58899999999999999999999999999999999
Q ss_pred EEEEc
Q 009944 367 TVRRA 371 (522)
Q Consensus 367 ~v~~~ 371 (522)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 328
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.42 E-value=6.3e-14 Score=108.47 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=58.2
Q ss_pred HHHHHHhhccC--CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYG--TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G--~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|++|| .|.+|.|+.+..+|.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.++...
T Consensus 16 ~~l~~~F~~~G~~~v~~v~i~~~~~~g~~---kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 16 EDLTEAVHSLGVNDILEIKFFENRANGQS---KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp HHHHHHHHTTTCCCCCCEEEEECTTTCCE---EEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred HHHHHHHHHhCCCceEEEEEEecCCCCcc---CcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 49999999999 9999999998877765 789999999999999999999999999999999998754
No 329
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=110.49 Aligned_cols=85 Identities=31% Similarity=0.434 Sum_probs=68.0
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~ 249 (522)
....++|||+|||+.+|+++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFR------LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEE------EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEE------EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 44568999999999999999999999999853210 0111113455899999999999999999 6999999999
Q ss_pred eEEEecCCCCCc
Q 009944 250 AVRVRRPTDYNP 261 (522)
Q Consensus 250 ~~~v~~~~~~~~ 261 (522)
.|.|.++.....
T Consensus 79 ~l~v~~a~~~~~ 90 (104)
T 1p1t_A 79 ALRVDNAASEKN 90 (104)
T ss_dssp CBEEEETTCTTH
T ss_pred EEEEEeCCCccc
Confidence 999998776543
No 330
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=115.24 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=70.1
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|||+.+|+++|+++|..||.|..+.. .....+....++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~-~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQ-RIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHH-HHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccc-cceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44678999999999999999999999998642100 00000333467889999999999999999999 59999999999
Q ss_pred EEEecCCCCC
Q 009944 251 VRVRRPTDYN 260 (522)
Q Consensus 251 ~~v~~~~~~~ 260 (522)
|.|.+++...
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999876543
No 331
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.42 E-value=3.6e-13 Score=123.36 Aligned_cols=100 Identities=32% Similarity=0.506 Sum_probs=85.8
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCC-CCCccEEEEEecChHhHHHHHHHHh
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGE-TPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~-~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
....++.|.+.++..++..+ +.++|.+.|++||.|.+|.|+++..++.. .+++|++||+|.+.++|.+|++.||
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e-----~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDD-----LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTT-----HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccchhhcCCCHHHHHHH-----HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 55678999999999877654 44699999999999999999866544321 1457899999999999999999999
Q ss_pred CCccCCeEEEEEEeCCcccccccCCC
Q 009944 497 GRKFGGNTVNAFYYPEDKYFNKDYSA 522 (522)
Q Consensus 497 g~~~~Gr~l~v~~~~~~~~~~~~~~~ 522 (522)
|+.|+||+|.+.|+++++|..++|++
T Consensus 197 gr~~~gr~i~~~~~~~~~f~~~~~~~ 222 (222)
T 3dxb_A 197 GRWFAGRKVVAEVYDQERFDNSDLSA 222 (222)
T ss_dssp TCBSSSSBCEEEECCHHHHHTTCCCC
T ss_pred CceECCeEEEEEEcCHHHhhhcccCC
Confidence 99999999999999999999999985
No 332
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.41 E-value=4.3e-13 Score=108.10 Aligned_cols=66 Identities=23% Similarity=0.367 Sum_probs=60.5
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|+.||.|..|.|+.+..+|.. +|+|||+|.+.++|.+|+..|||..|+|++|.|.|+...
T Consensus 41 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 41 DEIQEKFCDYGEIKNIHLNLDRRTGFS---KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp HHHHHHHGGGSCEEEEECCBCTTTSSB---CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCc---ceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence 499999999999999999988777654 689999999999999999999999999999999998653
No 333
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.1e-13 Score=108.14 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=60.6
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|+.||.|..|.|+.+..+|.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|+...
T Consensus 38 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 38 EDIHDKFAEYGEIKNIHLNLDRRTGYL---KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTSSE---EEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred HHHHHHHhccCCeEEEEEEecCCCCce---eeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 499999999999999999998877654 789999999999999999999999999999999998654
No 334
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.3e-13 Score=105.92 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=58.9
Q ss_pred HHHHHHhhccCCeEEEEecCCCCC-CCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQN-GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~-g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|+.|| |..|.|+.+..+ +.. +|+|||+|.+.++|.+|| .|||..|+|++|.|.|+....
T Consensus 30 ~~l~~~F~~~G-i~~v~i~~~~~~~g~~---~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 30 ESIKEFFRGLN-ISAVRLPREPSNPERL---KGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp HHHHHHTTTSC-EEEEECCBCSSCTTSB---CSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHHCC-ceEEEEecCCCCCCCc---CeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCC
Confidence 49999999999 999999998765 554 688899999999999999 999999999999999988754
No 335
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=5.5e-13 Score=106.05 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=59.8
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
++|+++|+.|| |..|.|+.+..++.. +|+|||+|.+.++|.+|| .|||..|+|++|.|.|+....-
T Consensus 30 ~~l~~~F~~~g-i~~v~i~~~~~~g~~---~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 30 GDIDAIFKDLS-IRSVRLVRDKDTDKF---KGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp HHHHHHTTTSC-EEEEEEEECSSSCSE---EEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred HHHHHHHHhCC-ceEEEEeecCCCCcc---ceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence 49999999997 999999998877655 789999999999999999 8999999999999999887543
No 336
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.39 E-value=5.2e-13 Score=110.53 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=61.0
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+||+.|||..|+|++|.|.|+....
T Consensus 37 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 37 EDIHDKFAEYGEIKNIHLNLDRRTGYL---KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 103 (126)
T ss_dssp HHHHHHHHTTSCEEEEECCBCTTTSSB---CSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence 499999999999999999998777654 6889999999999999999999999999999999986543
No 337
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.39 E-value=8.4e-13 Score=111.85 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=64.5
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe--cCCCcEEEEEEeCHHHHHHHH-HhcCceecC-
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG- 248 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~--~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g- 248 (522)
...+|||+||++.+|+++|+++|++||. |.++.+ ...+|||||+|.+.++|+.|+ .|+|..|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~------------V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~ 112 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGT------------VLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA 112 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSC------------EEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 3457999999999999999999999998 444443 345789999999999999999 699999966
Q ss_pred -ceEEEecCCCC
Q 009944 249 -VAVRVRRPTDY 259 (522)
Q Consensus 249 -~~~~v~~~~~~ 259 (522)
+.|+|.|++..
T Consensus 113 g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 113 CCTLRIDFSKLT 124 (164)
T ss_dssp CSCEEEEECSSS
T ss_pred CcEEEEEEecCC
Confidence 99999997754
No 338
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1e-12 Score=106.97 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=59.5
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|.+||+.||+ .|.|++|.|.|+...
T Consensus 32 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 32 ASLRKYFEGFGDIEEAVVITDRQTGKS---RGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp HHHHHHHHTTSCEEEEEESCCSSSCCC---CSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred HHHHHHHHhCCCeeEEEEEEcCCCCcc---ceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 499999999999999999998877665 68999999999999999999999 899999999998653
No 339
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=110.95 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=57.9
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEe
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~ 510 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|+|.|+
T Consensus 78 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 78 KVLHAAFIPFGDITDIQIPLDYETEKH---RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHHGGGSCEEEEECCCCTTTCCC---CSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHHHhcCCEEEEEEeecCCCCCc---CcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 499999999999999999998777654 789999999999999999999999999999999885
No 340
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=3.4e-13 Score=109.46 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=62.1
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|||+++|+++|+++|.+||. |..+.+... |||||+|.+.++|++|| .||+..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSC------------EEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34679999999999999999999999997 666766655 99999999999999999 59999999988
Q ss_pred -----EEEecCC
Q 009944 251 -----VRVRRPT 257 (522)
Q Consensus 251 -----~~v~~~~ 257 (522)
|+|....
T Consensus 81 ~~~~~i~v~~~~ 92 (115)
T 3beg_B 81 GETAYIRVKVDG 92 (115)
T ss_dssp SCCCBCEEEECC
T ss_pred eeeEEEEeccCC
Confidence 6666543
No 341
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.38 E-value=1.1e-12 Score=108.25 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=61.0
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
++|+++|+.||.|..|.|+.+. +|.. +|+|||+|.+.++|.+|++.|||..|+|++|+|.|+.....
T Consensus 50 ~~l~~~F~~~G~v~~v~i~~~~-~g~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 50 ADIQELFAEFGTLKKAAVDYDR-SGRS---LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHHHHHHHTTSCCSEEEEECCS-SSSC---CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred HHHHHHHHhcCCeeEEEEEECC-CCCE---eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 4999999999999999999987 6654 68999999999999999999999999999999999887543
No 342
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=3.3e-14 Score=115.87 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=70.6
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCC--CCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG--PGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~--~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
..+.++|||+|||..+|+++|+++|..||.|....... .+.++.+..++.++|||||+|.+.++|.+|+ .|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 34567999999999999999999999999875310000 0112333355678999999999999999999 59999999
Q ss_pred CceEEEecCCCCC
Q 009944 248 GVAVRVRRPTDYN 260 (522)
Q Consensus 248 g~~~~v~~~~~~~ 260 (522)
|++|.|.++....
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999876543
No 343
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.2e-13 Score=112.64 Aligned_cols=82 Identities=24% Similarity=0.264 Sum_probs=65.3
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEE--EecCCCcEEEEEEeCHHHHHHHHHhcCceecC
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV--YINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~--~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 248 (522)
.....+|||+|||+++|+++|+++|.+||.|.+. +..|.-+ ..++++|||||+|.+.++|++||+.++..|.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~-----v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGG-----KEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTG-----GGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCC-----cceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC
Confidence 3557899999999999999999999999864200 0012211 34667899999999999999999779999999
Q ss_pred ceEEEecCC
Q 009944 249 VAVRVRRPT 257 (522)
Q Consensus 249 ~~~~v~~~~ 257 (522)
+.|.|..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 999997654
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=1.1e-12 Score=106.65 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=61.9
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcE-EEEEEeCHHHHHHHH-HhcCceecC--ce
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF-AFVEMRTVEEASNAM-ALDGIIFEG--VA 250 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~-afV~f~~~~~a~~a~-~~~~~~~~g--~~ 250 (522)
..|||+||++.+|+++|+++|.+||. |.++.+....|| |||+|.+.++|..|+ .|+|..|.| +.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~------------V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGK------------VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSC------------EEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 35889999999999999999999998 444443333586 999999999999999 699999988 68
Q ss_pred EEEecCCCC
Q 009944 251 VRVRRPTDY 259 (522)
Q Consensus 251 ~~v~~~~~~ 259 (522)
|+|.+++..
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999987654
No 345
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.36 E-value=1.1e-12 Score=112.80 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=61.4
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+||+.|||..|+|++|+|.|+....
T Consensus 54 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 54 EQIYELFSKSGDIKKIIMGLDKMKKTA---CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 499999999999999999998876654 7899999999999999999999999999999999997643
No 346
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.36 E-value=8.1e-13 Score=113.05 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=61.2
Q ss_pred HHHHHHhhccC--CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYG--TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G--~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|+.|| .|..|.|+.+..+|.. +|||||+|.+.++|.+||+.|||..|+|++|.|.++...
T Consensus 70 ~~L~~~F~~~G~i~v~~v~i~~d~~tg~s---kGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 70 QQLIQVIRSIGVYDVVELKFAENRANGQS---KGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HHHHHHHHHTTCCCEEEEEEEECTTTCCE---EEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred HHHHHHHHHHCCccEEEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 49999999999 9999999999878765 789999999999999999999999999999999998754
No 347
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.36 E-value=7.7e-13 Score=104.48 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=57.3
Q ss_pred HHHHHhhccCCeEEEEecCCC-CCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 446 DMREECGKYGTLVNVVIPRPD-QNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 446 ~l~~~f~~~G~I~~v~i~~~~-~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
+|+++|+.|| |..|.|+.+. .+|.. +|+|||+|.+.++|.+|+ .|||..|+|+.|.|.++...
T Consensus 35 ~l~~~F~~~G-i~~v~i~~~~~~~g~~---~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 35 SIKEFFRGLN-ISAVRLPREPSNPERL---KGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp HHHHHSCSSC-EEEEECSCCTTTTCCC---CSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred HHHHHHHhcC-CeEEEEEecCCcCCcc---CeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 9999999999 9999999987 45554 688899999999999999 89999999999999998764
No 348
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.5e-13 Score=103.89 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=58.0
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|+.|++.+..
T Consensus 20 ~~l~~~f~~~G~i~~~~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 20 QDLVKLCQPYGKIVSTKAILDKTTNKC---KGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHTTSTTTSCEEEEEEECCSSSCSC---CSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCc---CcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 499999999999999999998777664 6899999999999999999999999999999887643
No 349
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.7e-12 Score=103.20 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=60.3
Q ss_pred HHHHHHhhccCCeEE-EEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccccc
Q 009944 445 EDMREECGKYGTLVN-VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 517 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~-v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~~~ 517 (522)
++|+++|++||.|.. |.|+.+ .+|.+ +|+|||+|.+.++|.+||+. ||..|+|+.|.|.+++...+..
T Consensus 30 ~~l~~~F~~~G~v~~~v~i~~~-~~g~~---~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 30 EEIVQFFSGLEIVPNGMTLPVD-FQGRS---TGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVRT 98 (104)
T ss_dssp HHHHHHTTTCCEEEEEEECCBC-SSSCB---CSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSCC
T ss_pred HHHHHHHHhcCCcceeEEEEEC-CCCCc---ceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHHHH
Confidence 499999999999998 888887 56654 68999999999999999997 9999999999999998776543
No 350
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.3e-12 Score=98.47 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=66.0
Q ss_pred CCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEE-EecCCCCCCCCCCCccEEEEEecChHhHHHHHHHH
Q 009944 417 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNV-VIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL 495 (522)
Q Consensus 417 ~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v-~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~l 495 (522)
...+.|-+|+..++.+ +|+++|++||.|..| .|+.+..+ |.|||+|.+.++|.+|+..|
T Consensus 15 ~~~l~V~nlp~~~t~~-------------~l~~~F~~~G~v~~~~~i~~~~~~-------~~afV~f~~~~~a~~Ai~~l 74 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWE-------------VLDSLLVQYGVVESCEQVNTDSET-------AVVNVTYSSKDQARQALDKL 74 (96)
T ss_dssp CCCEEEEEECSSSCHH-------------HHHHHHHHHSCEEEEEEECCSSSS-------EEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCHH-------------HHHHHHHhcCCeEEEEEeecCCCC-------CEEEEEECCHHHHHHHHHHh
Confidence 3556677777666654 999999999999999 58776532 45899999999999999999
Q ss_pred hCCccCCeEEEEEEeCCcc
Q 009944 496 SGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 496 ng~~~~Gr~l~v~~~~~~~ 514 (522)
||..|+|++|.|.|+.+..
T Consensus 75 ~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 75 NGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp TTCBCSSCBCEEEECCCCC
T ss_pred CCCEECCcEEEEEEcCccc
Confidence 9999999999999998764
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.35 E-value=1.6e-12 Score=100.04 Aligned_cols=76 Identities=25% Similarity=0.445 Sum_probs=58.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCcEEEEEEeCHHHHHHHHHhcCceecCc
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 249 (522)
.....+|||+|||+++|+++|+++|++||. |.++.+. .++|||||+|.+.++|.++.. ....+.|+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~------------i~~v~i~~~srGfaFV~F~~~~~A~~~~~-~~~~~~g~ 74 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGE------------VVDVFIPKPFRAFAFVTFADDKVAQSLCG-EDLIIKGI 74 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEECCSSCCSEEEEEESCHHHHHHHTT-CEEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEeeCCCCEEEEEECCHHHHHHHcC-CCcccCCE
Confidence 345679999999999999999999999997 5666554 479999999999999985332 13445699
Q ss_pred eEEEecCCCC
Q 009944 250 AVRVRRPTDY 259 (522)
Q Consensus 250 ~~~v~~~~~~ 259 (522)
.|.|.++...
T Consensus 75 ~v~v~~a~~k 84 (89)
T 3d2w_A 75 SVHISNAEPK 84 (89)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEcCCC
Confidence 9999986543
No 352
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.34 E-value=4.5e-13 Score=103.69 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=65.0
Q ss_pred ceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCc
Q 009944 420 AKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK 499 (522)
Q Consensus 420 ~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~ 499 (522)
..|.+|+..++++ +|+++|++||.|..|.|+.+..+|.. +|+|||+|.+.+ |.+|+..|||..
T Consensus 4 l~V~nLp~~~t~~-------------~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~-a~~a~~~l~g~~ 66 (90)
T 2ki2_A 4 IYVGNLVYSATSE-------------QVKELFSQFGKVFNVKLIYDRETKKP---KGFGFVEMQEES-VSEAIAKLDNTD 66 (90)
T ss_dssp EEEEEECTTSSHH-------------HHTTTHHHHTCCSEEEECCCSSSCCC---CEEEEEEECTTH-HHHHHHTSCSSC
T ss_pred EEECCCCCCCCHH-------------HHHHHHHhcCCEEEEEEEEcCCCCCc---ceEEEEEECCHH-HHHHHHHhCCCE
Confidence 4555666665554 99999999999999999998877654 789999999999 999999999999
Q ss_pred cCCeEEEEEEeCCcc
Q 009944 500 FGGNTVNAFYYPEDK 514 (522)
Q Consensus 500 ~~Gr~l~v~~~~~~~ 514 (522)
|+|++|+|.++....
T Consensus 67 ~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 67 FMGRTIRVTEANPKK 81 (90)
T ss_dssp CSSSSCSEEEC----
T ss_pred ECCeEEEEEEcCCCC
Confidence 999999999987643
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=8.7e-13 Score=107.76 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=65.8
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecCce
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~ 250 (522)
...++|||+|| .+|+++|+++|..||. |..+.+..++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~------------I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCC------------CSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCC------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 45789999996 6999999999999997 455666789999999999999999999 79999999999
Q ss_pred EEEecCCCC
Q 009944 251 VRVRRPTDY 259 (522)
Q Consensus 251 ~~v~~~~~~ 259 (522)
|.|.++...
T Consensus 103 l~V~~a~~~ 111 (121)
T 2bz2_A 103 LKVNIARKQ 111 (121)
T ss_dssp CEEEECCSS
T ss_pred EEEEEeCCC
Confidence 999987654
No 354
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.2e-12 Score=103.45 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=60.1
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcccccccC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~~~~~~ 520 (522)
++|+++|++||.| .|.|+.+. ++.+ +|+|||+|.+.++|.+||+ +|+..|+|+.|.|.++....-..+.|
T Consensus 30 ~~l~~~F~~~G~~-~v~i~~d~-~g~~---~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~~~~~~ 99 (102)
T 1wez_A 30 NDIYNFFSPLNPM-RVHIEIGP-DGRV---TGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGTSGSGP 99 (102)
T ss_dssp HHHHHSSCSCCCS-EEEEEESS-SSCE---EEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCCCCCCS
T ss_pred HHHHHHHHHcCce-EEEEEECC-CCCE---eeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCCCCCCC
Confidence 4999999999955 99999887 6654 7899999999999999995 79999999999999988766554443
No 355
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1e-12 Score=98.41 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=57.0
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEe
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 510 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~ 510 (522)
++|+++|++||.|..|.++.+..+|.+ +|+|||+|.+.++|.+|++.++ ..|+|++|.|.++
T Consensus 15 ~~l~~~F~~~G~v~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLVMRDPLTKRS---RGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHHTTTSCCCCEEEECCCCSSSC---SSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCc---CceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 399999999999999999998876654 6899999999999999999999 9999999999886
No 356
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.33 E-value=2e-12 Score=105.39 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=56.0
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccE-EEEEecChHhHHHHHHHHhCCccCC--eEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGK-VFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~-afV~F~~~~~A~~Ai~~lng~~~~G--r~l~v~~~~~~~~ 515 (522)
++|.++|++||.|.+|.|.... +|+ |||+|.+.++|.+|++.|||..|.| ++|+|.|+....+
T Consensus 43 ~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 43 DVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp HHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred HHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 4999999999999999987632 366 9999999999999999999999988 9999999987543
No 357
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.3e-12 Score=99.88 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=57.5
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|+.| .|..|.|+.+ .+|.. +|+|||+|.+.++|.+||. |||..|+|+.|.|.++...
T Consensus 25 ~~l~~~F~~~-~i~~v~i~~~-~~g~~---~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 25 KNVMEFLAPL-KPVAIRIVRN-AHGNK---TGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp HHHHHHHTTS-CCSEEEEEEC-TTSCE---EEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred HHHHHHHhhC-CceEEEEEEC-CCCCC---ceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 4999999999 9999999988 46654 7899999999999999999 9999999999999998765
No 358
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=6.9e-12 Score=100.50 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCCCC----------CHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccC
Q 009944 293 GPDRVFVGGLPYYF----------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (522)
Q Consensus 293 ~~~~l~v~nLp~~~----------t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (522)
++++|.|.||=..- .+++|+++|++||.|..|.|.++. ++|+|||+|.+.++|.+|+..|||.+|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45689999983221 136899999999999999987652 5899999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 009944 363 DKTLTVRRAT 372 (522)
Q Consensus 363 g~~l~v~~~~ 372 (522)
|+.|.|.|+.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999984
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.4e-12 Score=100.39 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=61.6
Q ss_pred ccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCcEEEEEEeCHHHHHHHHHhcCceecCceE
Q 009944 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (522)
Q Consensus 173 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~ 251 (522)
..++|||+|||+.+|+++|+++|.+||. |..+.+. .++|||||+|.+.++|++|+.. ...+.|+.|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l 70 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGD------------VMDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGISV 70 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSC------------CCEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCC------------eeEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEEE
Confidence 4689999999999999999999999997 4455543 3699999999999999876533 456789999
Q ss_pred EEecCCCCC
Q 009944 252 RVRRPTDYN 260 (522)
Q Consensus 252 ~v~~~~~~~ 260 (522)
.|.++....
T Consensus 71 ~v~~a~~~~ 79 (88)
T 1wf0_A 71 HISNAEPKH 79 (88)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999876543
No 360
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.30 E-value=6.7e-13 Score=105.35 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=64.0
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHHHhcCce
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGII 245 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~~~~~ 245 (522)
....++|||+|||+.+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|++|+. ++..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~ 72 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSV------------KEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQIN 72 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCE------------EEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCe------------EEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCe
Confidence 3456899999999999999999999999974 34433 4467999999999999999999 9999
Q ss_pred ecCceEEEecCC
Q 009944 246 FEGVAVRVRRPT 257 (522)
Q Consensus 246 ~~g~~~~v~~~~ 257 (522)
|.|+.|.|.++.
T Consensus 73 ~~g~~l~v~~a~ 84 (102)
T 2xs2_A 73 FHGKKLKLGPAI 84 (102)
T ss_dssp ETTEECEEEEEE
T ss_pred ECCEEEEEEECC
Confidence 999999998754
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.30 E-value=2.8e-12 Score=116.42 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=68.9
Q ss_pred hcccceeEEeCCCccC---------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-H
Q 009944 171 TRHARRVYVGGLPPLA---------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-A 240 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~---------t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~ 240 (522)
....++|||+||+..+ ++++|+++|.+||. |.++.+..++|||||+|.+.++|+.|+ .
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~------------I~~v~v~~~kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGD------------IDRIRYVESKNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCC------------EEEEEEECCCCEEEEEeCCHHHHHHHHHH
Confidence 3457899999999998 89999999999997 777777789999999999999999999 7
Q ss_pred hcCcee------------cCceEEEecCCCC
Q 009944 241 LDGIIF------------EGVAVRVRRPTDY 259 (522)
Q Consensus 241 ~~~~~~------------~g~~~~v~~~~~~ 259 (522)
|++..| .|+.|.|.|+...
T Consensus 199 m~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 199 MSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred hCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 999999 8999999998754
No 362
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.2e-12 Score=103.00 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=58.2
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCcc--------CCeEEEEEEeCC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF--------GGNTVNAFYYPE 512 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~--------~Gr~l~v~~~~~ 512 (522)
++|+++|+.||.|..|.|+.+. ++.. +|+|||+|.+.++|.+|++.|||..| .|++|.|.|+..
T Consensus 40 ~~l~~~F~~~G~i~~~~i~~~~-~g~~---~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 40 QELENMLKPFGQVISTRILRDS-SGTS---RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HHHHHTTTTTSCEEEEEEEECS-SSCE---EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEEECC-CCCc---ceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 4999999999999999999987 6544 78999999999999999999999999 688899999874
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.2e-11 Score=95.08 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=62.7
Q ss_pred CeEEEcCCC-------CCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 295 DRVFVGGLP-------YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 295 ~~l~v~nLp-------~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
.+|.|.-.. ..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|.+|+..+++ +.|++|.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 456665544 468999999999999999999987 35799999999999999999997544 6799999
Q ss_pred EEEccCCC
Q 009944 368 VRRATASS 375 (522)
Q Consensus 368 v~~~~~~~ 375 (522)
|.|+..+.
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99997754
No 364
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.29 E-value=4.4e-13 Score=111.77 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=58.5
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcccccccC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 520 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~~~~~~ 520 (522)
++|+++|++|| |+.|.|+.+.. +.+ +|+|||+|.+.++|.+|| .||+..|+|+.|.|.++.......+.|
T Consensus 61 ~dL~~~F~~~G-i~~v~i~~d~~-g~s---rGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~~~~~ 130 (139)
T 2hgn_A 61 NDIYNFFSPLN-PVRVHIEIGPD-GRV---TGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGASNGAY 130 (139)
T ss_dssp HHHHHHHCSCC-CSEEECCCSSS-SCS---SCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-----
T ss_pred HHHHHHHHhcC-CeEEEEEECCC-CCC---ceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCCCCCC
Confidence 59999999999 67999999874 654 678899999999999999 789999999999999998877665544
No 365
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=103.90 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=58.7
Q ss_pred HHHHHHhhccCC---eEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGT---LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~---I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|+.||. |..|.|+.+.. |.. +|+|||+|.+.++|.+||+ |||..|+|+.|.|.++...+
T Consensus 26 ~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~---~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 26 EDVLNFFSDCRIRNGENGIHFLLNRD-GKR---RGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp HHHHHHTTTSCBTTTTTTEECCCCTT-STT---CSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHH
T ss_pred HHHHHHHHhcCCcCCcceEEEEECCC-CCE---eeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHH
Confidence 399999999998 99999999875 654 6899999999999999999 99999999999999987654
No 366
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.6e-12 Score=101.60 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=58.1
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecC----hHh----HHHHHH--HHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYD----AVG----CATAKN--ALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~----~~~----A~~Ai~--~lng~~~~Gr~l~v~~~~~~ 513 (522)
.+|+++|+.||+|.+|.++.|+.+|.+ +|+|||+|.+ +++ |.+|+. .|||..|+|++|+|.+-+..
T Consensus 21 ~~Lk~~Fs~fGeV~~~~li~Dp~Tg~s---lGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 21 ISIKNYFKKYGEISHFEAFNDPNSALP---LHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp HHHHHHHHTTSCCSEEEEEECTTTCCE---EEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCce---eeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 499999999999999999999999987 7899999996 444 899988 89999999999999986654
No 367
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.27 E-value=2.7e-12 Score=117.40 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=61.2
Q ss_pred HHHHHHhhccC--CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYG--TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G--~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
++|+++|++|| .|..|.|+++..++.. +|||||+|.+.++|.+||+.|||..|+|++|+|.|+...
T Consensus 83 ~~L~~~F~~~G~~~v~~v~i~~d~~tg~s---kGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 83 EDLTEAVHSLGVNDILEIKFFENRANGQS---KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp HHHHHHHHTTTCCCEEEEEEEECTTTCCE---EEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred HHHHHHHHHHCCcceEEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 49999999999 9999999999878765 789999999999999999999999999999999998753
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.24 E-value=1.3e-11 Score=118.33 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=65.2
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCcc---CCe-
Q 009944 291 AEGPDRVFVGG--LPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDK- 364 (522)
Q Consensus 291 ~~~~~~l~v~n--Lp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~- 364 (522)
..+..+|||+| |+..+|+++|+++|++||.|..|.+.. ++|||||+|.+.++|++|++.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45567999999 578999999999999999999987753 479999999999999999999999877 344
Q ss_pred -EEEEEEcc
Q 009944 365 -TLTVRRAT 372 (522)
Q Consensus 365 -~l~v~~~~ 372 (522)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67788874
No 369
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=100.33 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=55.5
Q ss_pred cccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---cCCCcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 172 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
...++|||+|||+.+|+++|+++|.+||.|. .. .+.+..+ +.++|||||+|.+.++|++|+ .++ .++
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~------~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~ 76 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VD------WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EED 76 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EE------CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE------EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcC
Confidence 4468999999999999999999999999752 00 0111111 467999999999999999999 562 355
Q ss_pred CceEEEec
Q 009944 248 GVAVRVRR 255 (522)
Q Consensus 248 g~~~~v~~ 255 (522)
|+.+.+..
T Consensus 77 G~~~~~~~ 84 (114)
T 2dnl_A 77 GKLYLCVS 84 (114)
T ss_dssp TEEEEEEC
T ss_pred CcEEEecc
Confidence 55555543
No 370
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.24 E-value=8.7e-12 Score=110.85 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=66.5
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEEeCHHHHHHHHHhcCce
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGII 245 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~~~~~ 245 (522)
....++|||+|||+.+|+++|.++|.+||.| ..+.+ +.++|||||+|.+.++|.+|++..+..
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v------------~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~ 173 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQV------------LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQK 173 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTTSCCE------------EEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCE
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhcCCCE------------EEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCe
Confidence 3456899999999999999999999999974 44433 446899999999999999999766779
Q ss_pred ecCceEEEecCCCCC
Q 009944 246 FEGVAVRVRRPTDYN 260 (522)
Q Consensus 246 ~~g~~~~v~~~~~~~ 260 (522)
|.|+.|.|.+.+.|.
T Consensus 174 ~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 174 YKETDLLILFKDDYF 188 (193)
T ss_dssp ETTEECEEEETTTC-
T ss_pred ECCEEEEEEEhHHHH
Confidence 999999999987764
No 371
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.19 E-value=1.4e-11 Score=100.48 Aligned_cols=65 Identities=14% Similarity=0.303 Sum_probs=56.9
Q ss_pred HHHHHHhhccCCeE--EEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 445 EDMREECGKYGTLV--NVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 445 ~~l~~~f~~~G~I~--~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
++|+++|++| .|+ .|.|+.+.. |.+ +|+|||+|.+.++|.+||+. ++..|+|+.|.|.++...++
T Consensus 57 ~dL~~~F~~~-~i~~~~v~i~~d~~-Grs---rGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~~e~ 123 (126)
T 2hgm_A 57 EEIVQFFSGL-EIVPNGITLPVDPE-GKI---TGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQEEV 123 (126)
T ss_dssp HHHHHHTTTS-CEEEEEEECCCCSS-SSS---CSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECHHHH
T ss_pred HHHHHHHhcC-CceeeEEEEEECCC-CCC---ceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCHHHh
Confidence 4999999999 666 899999875 654 68999999999999999994 88999999999999876654
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=4.5e-10 Score=83.69 Aligned_cols=61 Identities=8% Similarity=0.305 Sum_probs=54.5
Q ss_pred HHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCccc
Q 009944 443 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 515 (522)
Q Consensus 443 ~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~~ 515 (522)
+..+|.+.|.+||.|..+++..+ .+||+|.+.++|.+||+ |||..++|+.|+|.+++.+=.
T Consensus 28 l~~~L~~~F~~~G~Vi~vr~~~d-----------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 28 LIDELLQQFASFGEVILIRFVED-----------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSGP 88 (91)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSS-----------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSSC
T ss_pred HHHHHHHHHHhCCCeEEEEEecC-----------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCcc
Confidence 44589999999999999999874 35999999999999999 999999999999999987643
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=6.1e-11 Score=92.52 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=51.9
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCcc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 514 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~~ 514 (522)
++|+++|++||.|..|.|+.. .+|||||+|.+.++|..||+.+++ +.|++|+|.|+....
T Consensus 32 ~~L~~~F~~~G~V~~v~i~~~--------~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 32 DVLLRLLQKYGEVLNLVLSSK--------KPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHHHHTTSCEEEEEEESS--------SSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHHHHHhcCCEEEEEEccC--------CCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 599999999999999999832 258999999999999999998554 689999999987643
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=3.1e-10 Score=108.72 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=63.1
Q ss_pred hcccceeEEeC--CCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceec
Q 009944 171 TRHARRVYVGG--LPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (522)
Q Consensus 171 ~~~~~~v~v~n--lp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~ 247 (522)
..++++|||+| |+..+|+++|+++|.+||. |..+.+..++|||||+|.+.++|++|+ .|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~------------V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC------------EEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 34567999999 5788999999999999997 677887789999999999999999999 79998874
Q ss_pred ---Cc--eEEEecC
Q 009944 248 ---GV--AVRVRRP 256 (522)
Q Consensus 248 ---g~--~~~v~~~ 256 (522)
|+ .+.|.+.
T Consensus 83 ~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 83 DDLGQKITLYLNFV 96 (345)
T ss_dssp CTTSCEEECEEEEC
T ss_pred cccCCceEEEEEEe
Confidence 44 5666664
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=8.8e-10 Score=88.10 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcC-hHHHHHHHHHHc--CCccCCeEE
Q 009944 291 AEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD-PAVTDIACAALN--GLKMGDKTL 366 (522)
Q Consensus 291 ~~~~~~l~v~nLp~~-~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~-~~~A~~Al~~l~--g~~~~g~~l 366 (522)
......|+|+||+.. +++++|+++|+.||.|.+|.++.+.. .|||+|.+ .++|..|+..|+ |..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 344568999999999 99999999999999999999998754 59999999 899999999995 789999999
Q ss_pred EEEEc
Q 009944 367 TVRRA 371 (522)
Q Consensus 367 ~v~~~ 371 (522)
++...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98875
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.9e-09 Score=80.29 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=60.2
Q ss_pred CeEEEcCCCC----CCCH----HHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEE
Q 009944 295 DRVFVGGLPY----YFTE----TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (522)
Q Consensus 295 ~~l~v~nLp~----~~t~----~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (522)
-||+|.-.+. .+-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+|++ |||..++|+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 3777776652 2322 5799999999999999999873 8999999999999999 99999999999
Q ss_pred EEEEccCC
Q 009944 367 TVRRATAS 374 (522)
Q Consensus 367 ~v~~~~~~ 374 (522)
+|+++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998763
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=5.6e-09 Score=95.28 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHhcCCceEEEEeeCC----CCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEcc
Q 009944 306 FTETQIKELLESFGTLHGFDLVKDR----DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (522)
Q Consensus 306 ~t~~~l~~~F~~~G~i~~v~~~~~~----~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (522)
-.+++|.+.|++||.|..+.|+.+. .++.++|++||+|.+.++|.+|+..|||.+|+|++|.|.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567999999999999999998653 355899999999999999999999999999999999999974
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=3.7e-09 Score=79.08 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=51.4
Q ss_pred HHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 443 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 443 ~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
+..+|.+.|..||+|..++|..+ .+||+|.+.++|.+||+ |||..++|+.|+|.+-.
T Consensus 37 l~~~L~~~F~~~G~Vilvr~v~d-----------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 37 LRTELMQTLGSYGTIVLVRINQG-----------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETT-----------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEEecC-----------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 44689999999999999999875 36999999999999999 99999999999998754
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.7e-08 Score=75.52 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=59.9
Q ss_pred CeEEEcCCCCC-----C-CH---HHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeE
Q 009944 295 DRVFVGGLPYY-----F-TE---TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (522)
Q Consensus 295 ~~l~v~nLp~~-----~-t~---~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (522)
-||+|.-++.. + .+ .+|.+.|+.||.|..++++.+. +||+|.+.++|.+||+ |+|..++|+.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 48888887643 2 22 5699999999999999999873 9999999999999998 9999999999
Q ss_pred EEEEEccC
Q 009944 366 LTVRRATA 373 (522)
Q Consensus 366 l~v~~~~~ 373 (522)
|+|.+..+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99997643
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.3e-07 Score=69.79 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc-----CCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEE
Q 009944 292 EGPDRVFVGGLPYYFTETQIKELLESF-----GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (522)
Q Consensus 292 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-----G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (522)
+..++|-|-|||..+++..|+.+++++ |.|..|.+..+. |-|+|+|.+...|.+|..+|+|..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 345789999999999999999999999 999999998874 359999999999999999999999999999
Q ss_pred EEEEc
Q 009944 367 TVRRA 371 (522)
Q Consensus 367 ~v~~~ 371 (522)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99854
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=2.8e-07 Score=73.60 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=51.8
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecC-hHhHHHHHHHHh--CCccCCeEEEEEEeC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYD-AVGCATAKNALS--GRKFGGNTVNAFYYP 511 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~-~~~A~~Ai~~ln--g~~~~Gr~l~v~~~~ 511 (522)
++|+++|++||.|..|.+.++. -.|||+|.+ .++|..|+.+|| |..|.|..+.+....
T Consensus 34 edLke~F~~~G~V~~Vd~~~g~---------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 34 EDLHILFSNHGEIKWIDFVRGA---------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHHHHHTCSSCCEEEEECCTTC---------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEecCC---------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 4999999999999999998765 356999999 899999999994 888999999998876
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=3.9e-07 Score=69.37 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=60.9
Q ss_pred CcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhcc-----CCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHH
Q 009944 418 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKY-----GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 492 (522)
Q Consensus 418 ~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~-----G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai 492 (522)
...-++.|+..++.. .|+.+.++| |.|.+|.+..+. |-|+|+|.+...|-+|.
T Consensus 22 rtiaL~~ipDtvnda-------------rIr~lve~~~~i~~g~i~KI~L~pDH---------~GAivef~d~~~AgKas 79 (117)
T 2l9w_A 22 TLICLFPLSDKVSPS-------------LICQFLQEEIHINEKDIRKILLVSDF---------NGAIIIFRDSKFAAKML 79 (117)
T ss_dssp SCEEEECCCTTCCHH-------------HHHHHHHHHTCCCTTTCSEEEEETTT---------TEEEEECSCHHHHHHHH
T ss_pred cEEEEecCCCCCCHH-------------HHHHHHhhhhccCccceeEEEEecCC---------CceEEEEccchhhHHHH
Confidence 444455555555554 899999999 999999998875 66999999999999999
Q ss_pred HHHhCCccCCeEEEEEEeCC
Q 009944 493 NALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 493 ~~lng~~~~Gr~l~v~~~~~ 512 (522)
-+|+|..|.|++|+|.-+.+
T Consensus 80 LaL~G~ef~gr~Lr~gTv~e 99 (117)
T 2l9w_A 80 MILNGSQFQGKVIRSGTIND 99 (117)
T ss_dssp HHHSSEEETTEEEEEECHHH
T ss_pred hhcCCeeecCeEEEecCHHH
Confidence 99999999999999976544
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.5e-05 Score=60.32 Aligned_cols=92 Identities=21% Similarity=0.314 Sum_probs=73.0
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecCceEEE
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~~~v 253 (522)
.++|.|.|||+.+.++.|.-+|+.-- ..-+..|.++.... +-|+|+|.+.+.|+..|+.....|++..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~r-------rsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRR-------RSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTT-------TTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCC-------cCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 46899999999999999999998620 01255688887765 8899999999999999987788899999999
Q ss_pred ecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCC
Q 009944 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFT 307 (522)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t 307 (522)
..... ..+.+|++.||++.|+
T Consensus 79 ~P~~~---------------------------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPP---------------------------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECCC---------------------------------CCCCCCCCCSCCCCCC
T ss_pred EcCCC---------------------------------CCcceEeeecCCCCCC
Confidence 74221 2235899999998875
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=4.6e-05 Score=58.07 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEE
Q 009944 293 GPDRVFVGGLPYYF-T----ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (522)
Q Consensus 293 ~~~~l~v~nLp~~~-t----~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (522)
-+++|+|.||+..+ . .+.++++|..|+++....+.+. -.-..|.|.++++|.+|...||+..|.|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45799999998765 2 2578999999999887766654 12479999999999999999999999999999
Q ss_pred EEEccC
Q 009944 368 VRRATA 373 (522)
Q Consensus 368 v~~~~~ 373 (522)
|.++.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999864
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.63 E-value=0.00024 Score=54.14 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=53.6
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCCc
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 513 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~~ 513 (522)
+.++++|..|+.+......+. +.-+.|.|.++++|.+|-..|++..|+|+.|+|.|+...
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkS---------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKS---------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETT---------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred HHHHHHHHhhCcCcceeecCc---------ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 588999999999998888764 467899999999999999999999999999999997643
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.54 E-value=0.00046 Score=51.56 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=45.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 357 (522)
..++| ++|+.+...||.++|+.||.| .|.++.|- .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999965 46666662 59999999999999999774
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.38 E-value=0.00094 Score=50.05 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=57.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCC--cceEEEEEEcChHHHHHHHHHHcCCcc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--SKGYGFCVYQDPAVTDIACAALNGLKM 361 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~--~~g~afV~f~~~~~A~~Al~~l~g~~~ 361 (522)
++|.|++||+.+||+++.+.++.+..+.....+..+.+.. .-.-|||.|.+.+++..-.+.++|..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4799999999999999999999998888777776553322 346799999999999999999999887
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.0023 Score=48.48 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=59.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh-----cCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEE
Q 009944 294 PDRVFVGGLPYYFTETQIKELLES-----FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~-----~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (522)
..+|.|.|||+.+.++.|.-+|++ =|.|..|.... +-|+|+|.+.+.|++.|+ -..+.|.+..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 468999999999999999999996 24588887653 359999999999999877 3357899999999
Q ss_pred EEccCC
Q 009944 369 RRATAS 374 (522)
Q Consensus 369 ~~~~~~ 374 (522)
....+.
T Consensus 79 ~P~~~~ 84 (104)
T 2dhx_A 79 RPAPPR 84 (104)
T ss_dssp EECCCC
T ss_pred EcCCCC
Confidence 876543
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.0022 Score=50.30 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=58.4
Q ss_pred hcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHHHhcCceecC-c
Q 009944 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG-V 249 (522)
Q Consensus 171 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g-~ 249 (522)
....+.|.|-+.|+.. ...|...|.+||. |+............|.|.+..+|++||..||..|.| -
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~------------Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~ 87 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGN------------ILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESI 87 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSC------------EEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTTE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCc------------EEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecCCE
Confidence 4456789999999986 5678889999998 445555556789999999999999999999999985 5
Q ss_pred eEEEec
Q 009944 250 AVRVRR 255 (522)
Q Consensus 250 ~~~v~~ 255 (522)
.|-|.+
T Consensus 88 mIGV~p 93 (119)
T 1wwh_A 88 MIGVKP 93 (119)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 566664
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.92 E-value=0.0032 Score=49.42 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=59.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCC-eEEEEEEcc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-KTLTVRRAT 372 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-~~l~v~~~~ 372 (522)
.+.|.|-+.|+.. ...|...|++||.|...... .+ ..+..|.|.+..+|++||. .||..|+| ..|-|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 4679999999985 67799999999999887762 12 3479999999999999998 79999974 778888764
Q ss_pred C
Q 009944 373 A 373 (522)
Q Consensus 373 ~ 373 (522)
.
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.85 E-value=0.0019 Score=48.38 Aligned_cols=53 Identities=19% Similarity=0.410 Sum_probs=45.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHc
Q 009944 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (522)
Q Consensus 296 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 357 (522)
.++| ++|+.+...||.++|+.||.| .|.++.|- .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4556 999999999999999999954 57777662 59999999999999999874
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.24 E-value=0.0058 Score=48.62 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=49.0
Q ss_pred HHHHHHhhccCCeEE-EEecCCCC--------CCCCC--CCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeCC
Q 009944 445 EDMREECGKYGTLVN-VVIPRPDQ--------NGGET--PGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 512 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~-v~i~~~~~--------~g~~~--~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~~ 512 (522)
..|-++|++||.|.+ +.+.+... ..... .|.....|+|++..+|.+||.. ||..|+|.-|-|..++.
T Consensus 21 ~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 21 NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEECCH
T ss_pred HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEECCH
Confidence 478999999999987 33322110 00000 1457899999999999999994 99999999888888764
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.91 E-value=0.0079 Score=45.25 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=55.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCC--cceEEEEEEcChHHHHHHHHHHcCCccC---C--eEEE
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--SKGYGFCVYQDPAVTDIACAALNGLKMG---D--KTLT 367 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~--~~g~afV~f~~~~~A~~Al~~l~g~~~~---g--~~l~ 367 (522)
-+|.|+.||+.+||+++.+.++.+-.+.+...+..+.+.. .-.-|||.|.+.++...-.+.++|..|- | .+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 4899999999999999888887665554433333322211 1235899999999999999999998772 2 3455
Q ss_pred EEEc
Q 009944 368 VRRA 371 (522)
Q Consensus 368 v~~~ 371 (522)
|.+|
T Consensus 90 VE~A 93 (97)
T 2l08_A 90 VEFA 93 (97)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6665
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.71 E-value=0.011 Score=44.15 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=46.8
Q ss_pred ceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE--ecC------CCcEEEEEEeCHHHHHHHH-HhcCce
Q 009944 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY--INH------EKKFAFVEMRTVEEASNAM-ALDGII 245 (522)
Q Consensus 175 ~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~--~~~------~~g~afV~f~~~~~a~~a~-~~~~~~ 245 (522)
.+|.|++||+.+|++++.+.+..+.. +.-.. -++ .-.-|||.|.+.+++.... .++|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~------------~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPE------------HDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCC------------EEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCccc------------ceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 57999999999999999988876532 21111 122 1257999999999999999 699988
Q ss_pred ecC
Q 009944 246 FEG 248 (522)
Q Consensus 246 ~~g 248 (522)
|.+
T Consensus 70 F~D 72 (91)
T 1uw4_A 70 FLD 72 (91)
T ss_dssp EEC
T ss_pred EEc
Confidence 754
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.55 E-value=0.015 Score=46.29 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=56.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEeeCC-----------C-CC-CcceEEEEEEcChHHHHHHHHHHcCCc
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDR-----------D-TG-NSKGYGFCVYQDPAVTDIACAALNGLK 360 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~-v~~~~~~-----------~-~g-~~~g~afV~f~~~~~A~~Al~~l~g~~ 360 (522)
..|.|-+.|+..+ ..|.+.|++||.|.+ +.+.... . .+ ....+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4688889976554 558899999999865 2221100 0 00 123578999999999999998 89999
Q ss_pred cCCeEEEEEEccC
Q 009944 361 MGDKTLTVRRATA 373 (522)
Q Consensus 361 ~~g~~l~v~~~~~ 373 (522)
|+|.-|-|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888888743
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.05 E-value=0.086 Score=39.40 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=41.0
Q ss_pred CCcceEEEeeCCCCcCcCCChHHHHHHHHHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 417 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 417 ~~~~~v~~l~~~~~~~~l~~~~~~~~~~~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
+....|+.|........ .||.++|++||.|. |..+.+ -.|||.|.+++.|..|+..++
T Consensus 13 p~r~HVf~l~FP~ewKt-----------~DI~~lFs~fggv~-I~WidD----------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHVTFPKEWKT-----------SDLYQLFSAFGNIQ-ISWIDD----------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEEECCTTCCH-----------HHHHHHHTTTCSCC-CEEEET----------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhhh-----------HHHHHHhhccCCEE-EEEEcC----------CeEEEEecCHHHHHHHHHhcc
Confidence 34566777733322221 49999999999654 333333 368999999999999999875
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.67 E-value=0.02 Score=56.72 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=41.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHH
Q 009944 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354 (522)
Q Consensus 295 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~ 354 (522)
+.|||. .|..+++.+|.++|++||+|..+.+..+ .| -||.|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHh
Confidence 689997 6999999999999999999999988765 23 599999999999997654
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.41 E-value=0.083 Score=39.61 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=33.1
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHh
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 496 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~ln 496 (522)
.||.++|++||.|. |..+.+ -.|||.|.+++.|..|+..++
T Consensus 20 ~Di~~lFs~fggv~-I~WidD----------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLFSAFGNIQ-ISWIDD----------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHTTTSEEEE-EEEEET----------TEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHhccCCEE-EEEEcC----------CeEEEEecCHHHHHHHHHhcc
Confidence 49999999999444 444443 368999999999999999875
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.82 E-value=0.033 Score=41.89 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=45.2
Q ss_pred cceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEEeCHHHHHHHH-HhcCceecC
Q 009944 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (522)
Q Consensus 174 ~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g 248 (522)
+-+|.|+.||+.+|++++.+.+..+-.+ +.....++..-. -...-.-|||.|.+.++..... .++|..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~-d~~~fv~G~~s~---~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAH-DYFEFFAADLSL---YPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSE-EECCCCCCCSSS---CCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCcc-ceEEEeCCccCC---CCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4589999999999999987666543110 000000000000 0011247999999999999999 699988754
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.39 E-value=0.022 Score=56.42 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=43.2
Q ss_pred hhhcccceeEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCc-EEEEEEeCHHHHHHHHHh
Q 009944 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK-FAFVEMRTVEEASNAMAL 241 (522)
Q Consensus 169 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~v~~~~~~~~~g-~afV~f~~~~~a~~a~~~ 241 (522)
......++|+|. .|..+++.+|.++|++||+ |.++...+++| ||.|+|.+.+.+..++..
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~------------i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGP------------INNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSC------------CCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCC------------cceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 345567899998 7999999999999999998 45555555655 999999999999988743
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.09 E-value=1.8 Score=43.75 Aligned_cols=55 Identities=18% Similarity=0.390 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHc
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 357 (522)
+..++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++.+++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3456665 99999999999999999965 4555544 269999999999999999885
No 402
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=69.63 E-value=1 Score=24.95 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.0
Q ss_pred CCCCCCCCccCCCCCCC
Q 009944 112 SGFDMAPPAAAMLPGAA 128 (522)
Q Consensus 112 ~~~d~~~~~~~~~~~~~ 128 (522)
..||.+|++|+.+++++
T Consensus 6 ~~WDvpP~GyE~vtp~q 22 (28)
T 1jmt_B 6 KYWDVPPPGFEHITPMQ 22 (28)
T ss_dssp CCBTCCCTTCTTSCHHH
T ss_pred cccCCCCCCccccCHHH
Confidence 37999999999888643
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=56.03 E-value=28 Score=34.95 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=33.8
Q ss_pred HHHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhC
Q 009944 445 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 497 (522)
Q Consensus 445 ~~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng 497 (522)
.+|.++|+.||.|. |..+.+ -.|||.|.+.+.|..++.+++.
T Consensus 454 ~~i~~~fs~fg~v~-V~widd----------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 454 SDLYQLFSAFGNIQ-ISWIDD----------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHHHGGGGCCCE-EEECSS----------SEEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCEE-EEEEcC----------CeEEEEECCHHHHHHHHHHHHh
Confidence 49999999999654 444433 3689999999999999999863
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=50.81 E-value=67 Score=23.11 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=46.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHH
Q 009944 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (522)
Q Consensus 294 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 356 (522)
.+-|.|-|+|..+-..++.-.....|--..+..+. |-|.|.|.+.++...|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 35678999999999999888888888777777763 34999999999999999887
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=44.64 E-value=55 Score=22.75 Aligned_cols=58 Identities=7% Similarity=0.097 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHhcCC-----ceEEEEeeCCCCCCcceEEEEEEcChHHHHHHHHHHcCCccCCeEEEEEEc
Q 009944 305 YFTETQIKELLESFGT-----LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (522)
Q Consensus 305 ~~t~~~l~~~F~~~G~-----i~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (522)
.+...+|..++..-+. |-.|.+..+ |.||+.... .|..++..|++..+.|+.+.|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 3566777777775554 345555432 689988755 577789999999999999998876
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.92 E-value=48 Score=27.62 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=36.4
Q ss_pred CeEEEcCCCC-C--------CCHHHHHHHH--HhcCCceEEEEeeCCCCCCcceEEEEEEcChHH
Q 009944 295 DRVFVGGLPY-Y--------FTETQIKELL--ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348 (522)
Q Consensus 295 ~~l~v~nLp~-~--------~t~~~l~~~F--~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~ 348 (522)
..+.|.|+|. . ....+|.+.| +.|.++. |....++ .-..|+|.|+|...-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChH
Confidence 4778889987 2 2347899977 8999986 4444443 2367999999987543
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=36.42 E-value=88 Score=22.87 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=26.1
Q ss_pred eEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCC
Q 009944 457 LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR 498 (522)
Q Consensus 457 I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~ 498 (522)
|..|.++.. - .||.||++.-.++...++..+.|-
T Consensus 40 i~~v~vP~~----f----PGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES----L----KGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT----S----TTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc----c----CCEEEEEEecchhHHHHHHCCCCc
Confidence 777888753 2 289999999998888888766553
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=34.81 E-value=48 Score=23.07 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=31.2
Q ss_pred CeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCccCCeEEEEEEeC
Q 009944 456 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 511 (522)
Q Consensus 456 ~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~~~Gr~l~v~~~~ 511 (522)
.|=.|.|.. .+.||+-.. ..|..+++.|++..+.|++|.+..+.
T Consensus 32 ~IG~I~i~d-----------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 32 DIGIITIMD-----------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp GEEEEEECS-----------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred hccEEEEeC-----------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 356677743 356888866 56889999999999999999987653
No 409
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=33.55 E-value=1.1e+02 Score=23.98 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=22.0
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEE-ecChHhHHHHHHHHh
Q 009944 454 YGTLVNVVIPRPDQNGGETPGVGKVFLE-YYDAVGCATAKNALS 496 (522)
Q Consensus 454 ~G~I~~v~i~~~~~~g~~~~g~G~afV~-F~~~~~A~~Ai~~ln 496 (522)
+-+|..|.+-.|-. ...+||. |-+.++...+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~-------~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFS-------ACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSC-------CEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCc-------EEEEEEEecCChhhHHHHHHHHH
Confidence 56899999977642 2445666 555555444555454
No 410
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=33.23 E-value=81 Score=22.27 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=38.3
Q ss_pred cEEEEEEeCHHHHHHHHH----hcCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEE
Q 009944 223 KFAFVEMRTVEEASNAMA----LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF 298 (522)
Q Consensus 223 g~afV~f~~~~~a~~a~~----~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (522)
-|.++.|....++..-++ ++...+.--.+++..+..| -++|
T Consensus 6 ~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~Y-----------------------------------E~m~ 50 (77)
T 3zzp_A 6 YTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRY-----------------------------------EVNI 50 (77)
T ss_dssp TEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEE-----------------------------------EEEE
T ss_pred EEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCce-----------------------------------EEEE
Confidence 488999987766655552 6666664333443333222 2566
Q ss_pred EcCCCCCCCHHHHHHHHHhcC
Q 009944 299 VGGLPYYFTETQIKELLESFG 319 (522)
Q Consensus 299 v~nLp~~~t~~~l~~~F~~~G 319 (522)
| |.++++++++...+++|-
T Consensus 51 I--l~P~l~ee~~~~~vek~~ 69 (77)
T 3zzp_A 51 V--LNPNLDQSQLQNEKEIIQ 69 (77)
T ss_dssp E--ECTTCCHHHHHHHHHHHH
T ss_pred E--ECCCCCHHHHHHHHHHHH
Confidence 6 568889988888887763
No 411
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=37.50 E-value=10 Score=28.98 Aligned_cols=51 Identities=20% Similarity=0.083 Sum_probs=32.6
Q ss_pred HHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCCc
Q 009944 446 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK 499 (522)
Q Consensus 446 ~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~~ 499 (522)
+|..+...++ +..+.+.+...+|.+. +-..|=.|.+.++|..|+..|--..
T Consensus 38 ~l~~f~~~~~-l~~~~v~~t~rnGk~W--yvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 38 NLNGWAKKEN-LKNYVVYETTRNGQPW--YVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 5666666666 3446555544344431 2234558999999999999886544
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.28 E-value=1.6e+02 Score=21.15 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=31.8
Q ss_pred HHHHHhhccCCeEEEEecCCCCCCCCCCCccEEEEEecChHhHHHHHHHHhCC
Q 009944 446 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR 498 (522)
Q Consensus 446 ~l~~~f~~~G~I~~v~i~~~~~~g~~~~g~G~afV~F~~~~~A~~Ai~~lng~ 498 (522)
++.-.....|---.|.... |.|.|.|.+.++-..|++.|-+.
T Consensus 28 evvlavrhlgyefycdyid-----------gqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 28 EVVLAVRHLGYEFYCDYID-----------GQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp HHHHHHHTTCCCEEEEECS-----------SCEEEEESSHHHHHHHHHHHEET
T ss_pred eeEEeehhcCeeEeeeeec-----------CeeEEEecCChHHHHHHHHHHhc
Confidence 5555556677766776643 78899999999999999988443
Done!