Query 009946
Match_columns 522
No_of_seqs 634 out of 3231
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 19:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 2E-127 5E-132 1005.8 24.5 419 93-517 1-423 (506)
2 COG2226 UbiE Methylase involve 99.7 2.6E-16 5.6E-21 155.6 12.5 101 215-317 51-156 (238)
3 PF01209 Ubie_methyltran: ubiE 99.7 2E-16 4.3E-21 156.7 9.4 102 215-317 47-153 (233)
4 PF08241 Methyltransf_11: Meth 99.6 2.2E-15 4.9E-20 125.5 8.8 93 220-315 1-95 (95)
5 PLN02233 ubiquinone biosynthes 99.6 1.8E-14 3.8E-19 145.1 16.4 102 216-318 74-183 (261)
6 PF13489 Methyltransf_23: Meth 99.6 8.9E-15 1.9E-19 134.1 8.9 139 194-348 8-161 (161)
7 PLN02244 tocopherol O-methyltr 99.6 5.6E-14 1.2E-18 146.7 15.8 102 214-318 117-224 (340)
8 PTZ00098 phosphoethanolamine N 99.6 6.7E-14 1.5E-18 141.1 15.3 160 186-356 31-208 (263)
9 PLN02396 hexaprenyldihydroxybe 99.5 4.7E-14 1E-18 146.0 11.7 134 215-352 131-291 (322)
10 PRK10258 biotin biosynthesis p 99.5 1.4E-13 3E-18 137.2 14.0 102 215-320 42-143 (251)
11 PRK14103 trans-aconitate 2-met 99.5 1.8E-13 4E-18 136.8 13.0 100 215-319 29-128 (255)
12 TIGR02752 MenG_heptapren 2-hep 99.5 1.1E-12 2.4E-17 128.8 16.8 102 216-318 46-152 (231)
13 PRK11036 putative S-adenosyl-L 99.5 5.5E-13 1.2E-17 133.5 12.9 134 215-352 44-209 (255)
14 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.1E-13 4.6E-18 133.5 8.7 100 216-319 60-163 (243)
15 PLN02336 phosphoethanolamine N 99.4 3.7E-12 7.9E-17 138.5 17.7 133 215-350 266-414 (475)
16 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.6E-12 5.7E-17 133.7 15.5 138 216-355 114-261 (340)
17 PRK08317 hypothetical protein; 99.4 6.1E-12 1.3E-16 122.6 16.3 148 193-349 5-175 (241)
18 PRK11088 rrmA 23S rRNA methylt 99.4 2.1E-12 4.6E-17 130.6 12.2 97 216-320 86-184 (272)
19 PRK01683 trans-aconitate 2-met 99.4 3E-12 6.4E-17 128.0 11.3 103 215-320 31-133 (258)
20 PRK11873 arsM arsenite S-adeno 99.4 8.7E-12 1.9E-16 125.8 14.7 134 215-349 77-229 (272)
21 KOG1540 Ubiquinone biosynthesi 99.4 3.9E-12 8.5E-17 124.9 11.3 103 214-317 99-214 (296)
22 PRK15068 tRNA mo(5)U34 methylt 99.4 2.8E-12 6.1E-17 133.0 11.1 129 216-351 123-275 (322)
23 TIGR02072 BioC biotin biosynth 99.4 1.2E-11 2.7E-16 120.7 14.7 103 216-320 35-138 (240)
24 PRK11207 tellurite resistance 99.4 5.6E-12 1.2E-16 121.7 12.0 135 216-357 31-177 (197)
25 TIGR00740 methyltransferase, p 99.3 1.5E-11 3.2E-16 121.8 15.1 101 216-319 54-163 (239)
26 PF13847 Methyltransf_31: Meth 99.3 3.4E-12 7.3E-17 117.6 9.7 102 216-319 4-112 (152)
27 PF12847 Methyltransf_18: Meth 99.3 4.8E-12 1E-16 109.7 9.4 100 216-317 2-111 (112)
28 PRK05785 hypothetical protein; 99.3 3.9E-12 8.4E-17 125.5 9.9 90 216-311 52-141 (226)
29 smart00828 PKS_MT Methyltransf 99.3 1.2E-11 2.6E-16 120.9 12.3 132 218-352 2-146 (224)
30 TIGR00477 tehB tellurite resis 99.3 1.6E-11 3.5E-16 118.3 12.3 135 217-358 32-177 (195)
31 TIGR00452 methyltransferase, p 99.3 1.2E-11 2.5E-16 127.7 11.7 132 216-351 122-274 (314)
32 PF07021 MetW: Methionine bios 99.3 2.2E-11 4.8E-16 116.1 12.2 127 216-350 14-167 (193)
33 PF02353 CMAS: Mycolic acid cy 99.3 4.6E-12 1E-16 128.4 8.1 139 215-359 62-226 (273)
34 PRK15451 tRNA cmo(5)U34 methyl 99.3 3.1E-11 6.6E-16 120.5 13.6 100 216-318 57-165 (247)
35 PF13649 Methyltransf_25: Meth 99.3 2.6E-12 5.7E-17 110.2 5.1 93 219-311 1-101 (101)
36 PRK00107 gidB 16S rRNA methylt 99.3 3.5E-11 7.7E-16 115.5 13.1 119 216-350 46-169 (187)
37 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 1.7E-10 3.6E-15 111.7 15.7 103 215-318 39-144 (223)
38 PRK12335 tellurite resistance 99.2 5.5E-11 1.2E-15 121.3 11.9 127 217-350 122-259 (287)
39 KOG1270 Methyltransferases [Co 99.2 9.9E-12 2.1E-16 122.8 6.1 96 216-318 90-196 (282)
40 PF03141 Methyltransf_29: Puta 99.2 3.7E-11 8.1E-16 128.2 10.2 190 128-350 293-491 (506)
41 COG4976 Predicted methyltransf 99.2 1.7E-11 3.7E-16 118.7 6.4 135 214-352 124-267 (287)
42 PRK00216 ubiE ubiquinone/menaq 99.2 4.3E-10 9.2E-15 110.0 16.4 102 216-318 52-159 (239)
43 smart00138 MeTrc Methyltransfe 99.2 5.6E-11 1.2E-15 120.0 10.1 104 215-319 99-244 (264)
44 PF08242 Methyltransf_12: Meth 99.2 4.5E-12 9.7E-17 108.1 1.4 93 220-313 1-99 (99)
45 COG2230 Cfa Cyclopropane fatty 99.2 2.5E-10 5.5E-15 115.3 13.5 124 180-317 45-176 (283)
46 COG4106 Tam Trans-aconitate me 99.2 7.7E-11 1.7E-15 113.4 9.0 105 214-321 29-133 (257)
47 PRK00121 trmB tRNA (guanine-N( 99.2 7.6E-11 1.6E-15 114.3 9.0 121 216-346 41-177 (202)
48 PRK06202 hypothetical protein; 99.2 4.9E-10 1.1E-14 110.5 14.1 100 215-317 60-166 (232)
49 KOG4300 Predicted methyltransf 99.2 8.8E-11 1.9E-15 112.3 8.2 99 217-318 78-183 (252)
50 TIGR03587 Pse_Me-ase pseudamin 99.1 3E-10 6.5E-15 110.5 11.9 97 216-317 44-142 (204)
51 TIGR00138 gidB 16S rRNA methyl 99.1 3.9E-10 8.4E-15 107.7 11.5 122 216-350 43-169 (181)
52 PRK05134 bifunctional 3-demeth 99.1 8.3E-10 1.8E-14 108.6 14.2 131 216-350 49-205 (233)
53 TIGR02021 BchM-ChlM magnesium 99.1 5.4E-10 1.2E-14 109.2 12.7 130 215-351 55-207 (219)
54 PLN02336 phosphoethanolamine N 99.1 3.5E-10 7.5E-15 123.1 12.5 128 216-347 38-179 (475)
55 PLN02585 magnesium protoporphy 99.1 1E-09 2.2E-14 113.5 14.9 126 216-349 145-298 (315)
56 KOG1541 Predicted protein carb 99.1 2.7E-10 5.8E-15 109.9 9.7 120 215-344 50-181 (270)
57 PF05401 NodS: Nodulation prot 99.1 4E-10 8.6E-15 107.9 10.4 100 214-318 42-147 (201)
58 TIGR01983 UbiG ubiquinone bios 99.1 8.1E-10 1.7E-14 107.8 12.5 132 216-351 46-204 (224)
59 PRK09489 rsmC 16S ribosomal RN 99.1 4.7E-10 1E-14 117.4 11.2 101 217-321 198-307 (342)
60 PRK11705 cyclopropane fatty ac 99.1 6E-10 1.3E-14 118.3 12.0 98 215-318 167-268 (383)
61 PRK06922 hypothetical protein; 99.1 3.6E-10 7.8E-15 125.1 10.6 101 216-318 419-538 (677)
62 COG4123 Predicted O-methyltran 99.1 4.5E-10 9.8E-15 111.6 10.2 158 216-383 45-232 (248)
63 PRK11188 rrmJ 23S rRNA methylt 99.1 7.7E-10 1.7E-14 108.0 11.1 91 216-318 52-166 (209)
64 TIGR02081 metW methionine bios 99.1 1.6E-09 3.4E-14 104.1 13.1 126 217-350 15-167 (194)
65 PF03848 TehB: Tellurite resis 99.1 3.5E-10 7.5E-15 108.8 8.4 97 216-317 31-133 (192)
66 TIGR00537 hemK_rel_arch HemK-r 99.1 2.1E-09 4.5E-14 101.9 13.6 120 217-350 21-165 (179)
67 PF05219 DREV: DREV methyltran 99.1 8.7E-10 1.9E-14 109.5 11.2 181 171-384 54-253 (265)
68 TIGR00091 tRNA (guanine-N(7)-) 99.1 6.2E-10 1.3E-14 107.2 9.8 121 217-347 18-155 (194)
69 PF05175 MTS: Methyltransferas 99.0 4.3E-10 9.4E-15 106.0 8.0 101 216-319 32-142 (170)
70 PRK08287 cobalt-precorrin-6Y C 99.0 7E-09 1.5E-13 99.0 15.2 119 216-349 32-155 (187)
71 PF08003 Methyltransf_9: Prote 99.0 1.5E-09 3.2E-14 110.2 10.8 133 215-351 115-268 (315)
72 PRK04266 fibrillarin; Provisio 99.0 6E-09 1.3E-13 103.0 14.8 130 216-351 73-211 (226)
73 PRK15001 SAM-dependent 23S rib 99.0 1.5E-09 3.3E-14 114.7 11.2 100 217-319 230-342 (378)
74 TIGR03840 TMPT_Se_Te thiopurin 99.0 2.2E-09 4.8E-14 105.1 11.0 98 216-317 35-152 (213)
75 COG2813 RsmC 16S RNA G1207 met 99.0 1.4E-09 2.9E-14 110.4 9.8 160 176-347 126-296 (300)
76 TIGR01177 conserved hypothetic 99.0 5.1E-09 1.1E-13 108.9 13.3 121 216-351 183-316 (329)
77 TIGR00406 prmA ribosomal prote 99.0 1.2E-08 2.5E-13 104.4 15.6 143 184-349 134-282 (288)
78 PRK00517 prmA ribosomal protei 99.0 1.5E-08 3.2E-13 101.5 16.0 116 215-350 119-238 (250)
79 TIGR03534 RF_mod_PrmC protein- 99.0 9E-09 2E-13 101.9 14.4 121 217-348 89-239 (251)
80 PRK14967 putative methyltransf 99.0 1.8E-08 3.9E-13 99.0 16.3 121 216-347 37-181 (223)
81 TIGR02469 CbiT precorrin-6Y C5 99.0 5.7E-09 1.2E-13 91.4 11.5 97 216-317 20-122 (124)
82 PLN02232 ubiquinone biosynthes 99.0 1.9E-09 4E-14 100.8 8.7 73 245-318 2-82 (160)
83 PRK07580 Mg-protoporphyrin IX 99.0 1.2E-08 2.5E-13 99.9 14.3 128 216-351 64-215 (230)
84 PTZ00146 fibrillarin; Provisio 99.0 1.1E-08 2.3E-13 104.2 14.2 132 215-351 132-272 (293)
85 TIGR02716 C20_methyl_CrtF C-20 98.9 8.8E-09 1.9E-13 105.9 13.7 128 215-347 149-303 (306)
86 PRK14968 putative methyltransf 98.9 1.6E-08 3.4E-13 95.5 14.1 121 216-348 24-171 (188)
87 KOG3010 Methyltransferase [Gen 98.9 2.2E-09 4.7E-14 105.1 8.2 117 217-344 35-158 (261)
88 PRK13944 protein-L-isoaspartat 98.9 1.3E-08 2.8E-13 98.9 12.4 95 216-317 73-173 (205)
89 COG2264 PrmA Ribosomal protein 98.9 9.9E-09 2.2E-13 104.6 11.8 124 215-351 162-289 (300)
90 PRK00377 cbiT cobalt-precorrin 98.9 1.9E-08 4.2E-13 97.0 12.7 119 215-345 40-165 (198)
91 PF06325 PrmA: Ribosomal prote 98.9 8.7E-09 1.9E-13 105.5 10.1 147 182-350 134-283 (295)
92 PF13659 Methyltransf_26: Meth 98.8 3.4E-09 7.4E-14 92.5 5.5 100 217-318 2-116 (117)
93 PRK13255 thiopurine S-methyltr 98.8 3E-08 6.4E-13 97.6 12.4 96 216-315 38-153 (218)
94 KOG1271 Methyltransferases [Ge 98.8 2.6E-08 5.6E-13 93.8 11.1 124 217-350 69-205 (227)
95 PRK14121 tRNA (guanine-N(7)-)- 98.8 9E-09 2E-13 108.7 9.0 100 216-317 123-235 (390)
96 PF06080 DUF938: Protein of un 98.8 5.6E-08 1.2E-12 94.0 13.5 132 218-351 28-193 (204)
97 PLN03075 nicotianamine synthas 98.8 1.9E-08 4.1E-13 102.7 10.3 102 215-317 123-233 (296)
98 PF05148 Methyltransf_8: Hypot 98.8 2.7E-08 5.9E-13 96.1 10.7 112 216-350 73-185 (219)
99 PRK13942 protein-L-isoaspartat 98.8 3.4E-08 7.3E-13 96.6 11.6 95 216-317 77-176 (212)
100 cd02440 AdoMet_MTases S-adenos 98.8 3.7E-08 8E-13 81.2 9.3 96 218-316 1-103 (107)
101 TIGR00080 pimt protein-L-isoas 98.8 6E-08 1.3E-12 94.8 12.0 96 215-317 77-177 (215)
102 TIGR03438 probable methyltrans 98.8 4.5E-08 9.7E-13 100.7 11.4 102 216-317 64-177 (301)
103 PRK14966 unknown domain/N5-glu 98.8 2.1E-07 4.5E-12 99.2 16.6 124 217-350 253-405 (423)
104 TIGR03533 L3_gln_methyl protei 98.7 1.5E-07 3.3E-12 96.1 13.9 122 216-349 122-273 (284)
105 PRK09328 N5-glutamine S-adenos 98.7 3.5E-07 7.7E-12 92.0 15.6 123 215-348 108-260 (275)
106 PRK07402 precorrin-6B methylas 98.7 2.9E-07 6.3E-12 88.5 13.9 98 216-319 41-144 (196)
107 TIGR00438 rrmJ cell division p 98.7 1.3E-07 2.9E-12 90.3 11.4 92 215-317 32-146 (188)
108 KOG2361 Predicted methyltransf 98.7 1.7E-07 3.8E-12 91.9 12.2 160 185-350 47-237 (264)
109 PF05891 Methyltransf_PK: AdoM 98.7 3.9E-08 8.5E-13 95.7 7.6 136 214-352 54-203 (218)
110 PF03291 Pox_MCEL: mRNA cappin 98.7 1.2E-07 2.7E-12 98.7 11.2 138 215-355 62-272 (331)
111 TIGR00536 hemK_fam HemK family 98.7 2.4E-07 5.2E-12 94.5 12.9 121 217-348 116-267 (284)
112 KOG3045 Predicted RNA methylas 98.7 1.5E-07 3.2E-12 93.1 10.7 113 215-351 180-292 (325)
113 KOG2940 Predicted methyltransf 98.7 4.3E-08 9.4E-13 95.2 6.8 133 217-352 74-229 (325)
114 TIGR03704 PrmC_rel_meth putati 98.6 1.4E-06 3.1E-11 87.4 16.6 121 216-346 87-236 (251)
115 PRK00312 pcm protein-L-isoaspa 98.6 2.6E-07 5.6E-12 89.9 10.9 94 215-318 78-176 (212)
116 PRK11805 N5-glutamine S-adenos 98.6 6.4E-07 1.4E-11 92.6 13.2 118 217-346 135-282 (307)
117 PHA03411 putative methyltransf 98.6 3.4E-07 7.4E-12 92.5 10.8 129 217-351 66-215 (279)
118 PRK00811 spermidine synthase; 98.6 6.7E-07 1.4E-11 91.4 13.0 103 215-319 76-193 (283)
119 PRK13256 thiopurine S-methyltr 98.5 1.1E-06 2.4E-11 86.8 12.3 99 216-317 44-163 (226)
120 PRK01544 bifunctional N5-gluta 98.5 9.1E-07 2E-11 97.4 12.6 122 216-348 139-291 (506)
121 PF02390 Methyltransf_4: Putat 98.5 4.7E-07 1E-11 87.6 9.1 121 218-347 20-157 (195)
122 PRK14901 16S rRNA methyltransf 98.5 1.1E-06 2.3E-11 95.1 12.8 125 216-345 253-408 (434)
123 TIGR00563 rsmB ribosomal RNA s 98.5 6.4E-07 1.4E-11 96.5 10.9 104 216-320 239-371 (426)
124 PRK10901 16S rRNA methyltransf 98.5 7.1E-07 1.5E-11 96.3 11.1 105 215-320 244-375 (427)
125 PRK01581 speE spermidine synth 98.5 2.8E-06 6.2E-11 89.0 15.1 130 214-349 149-296 (374)
126 KOG1975 mRNA cap methyltransfe 98.5 4.3E-07 9.4E-12 92.4 8.0 99 216-320 118-240 (389)
127 PRK04457 spermidine synthase; 98.4 8.6E-07 1.9E-11 89.6 10.0 102 215-317 66-177 (262)
128 COG2519 GCD14 tRNA(1-methylade 98.4 3.6E-06 7.8E-11 83.6 12.8 117 215-346 94-216 (256)
129 PRK03612 spermidine synthase; 98.4 2.2E-06 4.8E-11 94.7 12.5 125 215-345 297-439 (521)
130 PRK14904 16S rRNA methyltransf 98.4 1.2E-06 2.6E-11 94.9 10.1 104 216-320 251-380 (445)
131 PF01739 CheR: CheR methyltran 98.4 1.3E-06 2.8E-11 84.6 9.0 105 215-320 31-178 (196)
132 PLN02366 spermidine synthase 98.4 4.7E-06 1E-10 86.1 13.7 105 215-321 91-210 (308)
133 TIGR00417 speE spermidine synt 98.4 3.9E-06 8.4E-11 85.1 12.8 103 215-319 72-188 (270)
134 PRK13943 protein-L-isoaspartat 98.4 1.9E-06 4E-11 89.6 10.5 95 216-317 81-180 (322)
135 PRK14903 16S rRNA methyltransf 98.4 1.6E-06 3.4E-11 93.7 10.3 104 216-319 238-368 (431)
136 smart00650 rADc Ribosomal RNA 98.4 2.2E-06 4.7E-11 80.6 9.7 94 216-316 14-112 (169)
137 TIGR00446 nop2p NOL1/NOP2/sun 98.3 2.7E-06 5.9E-11 86.0 10.7 104 216-319 72-201 (264)
138 KOG3987 Uncharacterized conser 98.3 1E-06 2.2E-11 84.6 7.1 179 174-387 77-276 (288)
139 COG2242 CobL Precorrin-6B meth 98.3 7.3E-06 1.6E-10 78.2 12.3 118 215-347 34-158 (187)
140 PRK14902 16S rRNA methyltransf 98.3 5.4E-06 1.2E-10 89.8 12.9 103 216-319 251-381 (444)
141 PF01135 PCMT: Protein-L-isoas 98.3 1.5E-06 3.2E-11 85.1 7.2 106 193-318 58-173 (209)
142 PHA03412 putative methyltransf 98.3 2.7E-06 5.9E-11 84.3 9.1 96 216-312 50-158 (241)
143 PRK11783 rlmL 23S rRNA m(2)G24 98.3 3.2E-06 7E-11 96.6 11.0 123 216-349 539-679 (702)
144 PF07942 N2227: N2227-like pro 98.3 9.8E-06 2.1E-10 82.0 13.2 133 214-350 55-242 (270)
145 PF05724 TPMT: Thiopurine S-me 98.3 6.8E-06 1.5E-10 80.9 11.2 132 215-350 37-190 (218)
146 PF00891 Methyltransf_2: O-met 98.2 3.4E-06 7.4E-11 83.6 8.8 99 214-318 99-200 (241)
147 COG2890 HemK Methylase of poly 98.2 1.3E-05 2.7E-10 81.9 13.1 119 218-348 113-261 (280)
148 PLN02781 Probable caffeoyl-CoA 98.2 7.3E-06 1.6E-10 81.5 10.9 98 216-317 69-178 (234)
149 COG0220 Predicted S-adenosylme 98.2 2.2E-06 4.8E-11 84.8 7.0 99 217-317 50-164 (227)
150 PRK10611 chemotaxis methyltran 98.2 8.9E-06 1.9E-10 83.2 11.1 127 184-318 92-263 (287)
151 TIGR00478 tly hemolysin TlyA f 98.2 3.2E-05 7E-10 76.6 14.6 122 215-348 75-215 (228)
152 PRK13168 rumA 23S rRNA m(5)U19 98.2 1E-05 2.2E-10 87.7 11.6 118 216-351 298-425 (443)
153 COG2518 Pcm Protein-L-isoaspar 98.2 7.2E-06 1.6E-10 79.7 9.0 101 196-317 61-169 (209)
154 PRK11727 23S rRNA mA1618 methy 98.2 1.9E-05 4.1E-10 82.0 12.5 97 190-287 89-197 (321)
155 PF08704 GCD14: tRNA methyltra 98.1 1.4E-05 3.1E-10 80.0 10.8 120 215-348 40-169 (247)
156 PF11968 DUF3321: Putative met 98.1 1.6E-05 3.4E-10 77.5 10.1 119 216-351 52-182 (219)
157 COG1041 Predicted DNA modifica 98.1 5E-05 1.1E-09 78.9 13.2 121 215-351 197-331 (347)
158 TIGR00479 rumA 23S rRNA (uraci 98.0 2.4E-05 5.2E-10 84.4 10.3 119 216-350 293-420 (431)
159 PRK15128 23S rRNA m(5)C1962 me 98.0 3E-05 6.5E-10 82.9 10.8 100 216-317 221-339 (396)
160 PRK03522 rumB 23S rRNA methylu 98.0 2.8E-05 6.1E-10 80.6 10.0 118 216-351 174-297 (315)
161 PLN02672 methionine S-methyltr 98.0 2.7E-05 5.8E-10 91.8 10.5 122 216-347 119-300 (1082)
162 PF12147 Methyltransf_20: Puta 98.0 4.9E-05 1.1E-09 77.1 10.9 157 192-349 112-297 (311)
163 PRK10909 rsmD 16S rRNA m(2)G96 98.0 5.3E-05 1.1E-09 73.6 10.8 131 176-319 22-161 (199)
164 COG0500 SmtA SAM-dependent met 98.0 5.4E-05 1.2E-09 64.8 9.6 97 219-320 52-158 (257)
165 PRK01544 bifunctional N5-gluta 98.0 4.2E-05 9.1E-10 84.3 10.9 101 215-317 347-462 (506)
166 COG1352 CheR Methylase of chem 97.9 5.6E-05 1.2E-09 76.6 10.5 133 184-319 67-243 (268)
167 PF10294 Methyltransf_16: Puta 97.9 2.1E-05 4.5E-10 74.6 7.0 103 214-319 44-158 (173)
168 COG2521 Predicted archaeal met 97.9 2E-05 4.4E-10 77.2 6.9 129 214-350 133-277 (287)
169 KOG2899 Predicted methyltransf 97.9 7.2E-05 1.6E-09 73.8 10.0 97 215-316 58-208 (288)
170 PF01596 Methyltransf_3: O-met 97.9 5.1E-05 1.1E-09 74.1 8.7 98 216-317 46-155 (205)
171 PLN02476 O-methyltransferase 97.9 8.7E-05 1.9E-09 75.6 10.5 98 216-317 119-228 (278)
172 COG4122 Predicted O-methyltran 97.8 8.8E-05 1.9E-09 72.9 9.5 99 215-317 59-166 (219)
173 KOG1269 SAM-dependent methyltr 97.8 3.1E-05 6.8E-10 81.7 5.8 100 217-317 112-215 (364)
174 COG3963 Phospholipid N-methylt 97.7 0.00026 5.6E-09 66.4 9.7 102 216-317 49-156 (194)
175 TIGR02085 meth_trns_rumB 23S r 97.7 0.00019 4.1E-09 76.2 10.1 117 217-351 235-357 (374)
176 PRK00274 ksgA 16S ribosomal RN 97.7 0.00011 2.3E-09 74.7 7.8 69 216-287 43-113 (272)
177 KOG1331 Predicted methyltransf 97.7 2.7E-05 5.9E-10 78.5 3.3 98 216-320 46-146 (293)
178 KOG2904 Predicted methyltransf 97.7 0.00046 1E-08 69.4 11.8 122 191-318 129-286 (328)
179 PRK14896 ksgA 16S ribosomal RN 97.7 0.00016 3.4E-09 72.9 8.8 67 216-287 30-99 (258)
180 KOG1499 Protein arginine N-met 97.6 4.9E-05 1.1E-09 78.7 4.6 97 216-314 61-164 (346)
181 KOG1661 Protein-L-isoaspartate 97.6 0.00047 1E-08 66.9 10.1 95 216-317 83-193 (237)
182 PLN02589 caffeoyl-CoA O-methyl 97.5 0.0003 6.5E-09 70.6 8.6 97 216-316 80-189 (247)
183 PLN02823 spermine synthase 97.5 0.0013 2.7E-08 69.0 13.3 101 215-317 103-220 (336)
184 PF05185 PRMT5: PRMT5 arginine 97.5 0.00014 3E-09 79.0 6.1 96 216-314 187-294 (448)
185 PF01170 UPF0020: Putative RNA 97.5 0.0007 1.5E-08 64.6 10.1 122 216-350 29-171 (179)
186 PRK04148 hypothetical protein; 97.5 0.00058 1.3E-08 62.2 9.0 84 216-308 17-102 (134)
187 KOG3201 Uncharacterized conser 97.4 0.0001 2.3E-09 68.6 2.6 136 216-359 30-176 (201)
188 PF02527 GidB: rRNA small subu 97.3 0.0016 3.4E-08 62.6 10.3 119 218-349 51-174 (184)
189 TIGR00755 ksgA dimethyladenosi 97.3 0.0013 2.9E-08 65.9 10.4 66 216-286 30-101 (253)
190 PRK00536 speE spermidine synth 97.3 0.0023 5.1E-08 64.7 11.6 95 214-320 71-174 (262)
191 COG2263 Predicted RNA methylas 97.3 0.00043 9.4E-09 66.2 5.9 117 215-349 45-167 (198)
192 PF02475 Met_10: Met-10+ like- 97.3 0.00051 1.1E-08 66.8 6.1 127 171-314 67-199 (200)
193 KOG3178 Hydroxyindole-O-methyl 97.2 0.0015 3.2E-08 68.0 9.3 96 215-318 177-276 (342)
194 PRK11933 yebU rRNA (cytosine-C 97.2 0.0017 3.6E-08 71.0 10.0 104 215-318 113-243 (470)
195 PTZ00338 dimethyladenosine tra 97.2 0.0011 2.5E-08 68.1 7.9 67 216-287 37-109 (294)
196 COG0421 SpeE Spermidine syntha 97.1 0.0058 1.3E-07 62.5 12.0 106 214-321 75-194 (282)
197 PF09243 Rsm22: Mitochondrial 97.1 0.0069 1.5E-07 61.7 12.5 128 214-351 32-169 (274)
198 PRK04338 N(2),N(2)-dimethylgua 97.0 0.00089 1.9E-08 71.4 5.9 95 217-318 59-159 (382)
199 TIGR00095 RNA methyltransferas 97.0 0.0063 1.4E-07 58.6 11.2 99 216-318 50-160 (189)
200 KOG2798 Putative trehalase [Ca 97.0 0.0039 8.5E-08 63.9 9.8 73 278-351 258-338 (369)
201 COG4627 Uncharacterized protei 96.9 0.00065 1.4E-08 63.0 3.2 83 263-346 31-134 (185)
202 KOG3191 Predicted N6-DNA-methy 96.9 0.0077 1.7E-07 57.4 10.3 121 216-346 44-189 (209)
203 COG0357 GidB Predicted S-adeno 96.9 0.0099 2.1E-07 58.5 11.3 143 191-351 46-196 (215)
204 KOG1663 O-methyltransferase [S 96.9 0.0043 9.3E-08 61.1 8.7 97 216-317 74-183 (237)
205 COG1092 Predicted SAM-dependen 96.9 0.011 2.3E-07 63.3 12.1 124 216-344 218-360 (393)
206 KOG2915 tRNA(1-methyladenosine 96.8 0.014 2.9E-07 59.0 11.8 125 196-347 94-232 (314)
207 PRK05031 tRNA (uracil-5-)-meth 96.8 0.0043 9.3E-08 65.7 8.7 114 217-351 208-344 (362)
208 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.8 0.0009 2E-08 67.4 3.3 84 265-349 138-238 (256)
209 PRK11760 putative 23S rRNA C24 96.7 0.015 3.2E-07 60.8 11.7 120 214-343 210-332 (357)
210 KOG2352 Predicted spermine/spe 96.7 0.0039 8.4E-08 67.4 7.3 94 218-317 51-161 (482)
211 PF01564 Spermine_synth: Sperm 96.7 0.0041 8.9E-08 62.4 7.1 126 215-346 76-216 (246)
212 TIGR03439 methyl_EasF probable 96.7 0.012 2.7E-07 61.2 10.8 101 217-317 78-197 (319)
213 TIGR02143 trmA_only tRNA (urac 96.7 0.0066 1.4E-07 64.1 8.7 114 218-350 200-334 (353)
214 KOG1709 Guanidinoacetate methy 96.6 0.0071 1.5E-07 59.1 7.9 113 193-317 88-206 (271)
215 PF02384 N6_Mtase: N-6 DNA Met 96.6 0.0079 1.7E-07 61.9 8.8 120 193-320 32-186 (311)
216 COG2520 Predicted methyltransf 96.5 0.014 3E-07 61.2 10.1 152 174-343 157-313 (341)
217 COG2265 TrmA SAM-dependent met 96.5 0.011 2.4E-07 64.1 9.6 120 215-347 293-417 (432)
218 TIGR02987 met_A_Alw26 type II 96.5 0.012 2.6E-07 65.3 9.7 109 215-323 31-202 (524)
219 PF01728 FtsJ: FtsJ-like methy 96.5 0.0083 1.8E-07 56.7 7.2 92 214-317 22-139 (181)
220 COG0293 FtsJ 23S rRNA methylas 96.4 0.037 8E-07 54.0 11.6 92 215-317 45-159 (205)
221 PF01269 Fibrillarin: Fibrilla 96.4 0.021 4.5E-07 56.3 9.9 153 188-350 51-212 (229)
222 KOG1500 Protein arginine N-met 96.4 0.0045 9.7E-08 63.9 5.2 93 215-316 177-281 (517)
223 COG0030 KsgA Dimethyladenosine 96.1 0.024 5.1E-07 57.3 8.8 66 216-286 31-102 (259)
224 COG1189 Predicted rRNA methyla 96.1 0.19 4.1E-06 50.1 14.8 125 214-348 78-222 (245)
225 TIGR00308 TRM1 tRNA(guanine-26 96.0 0.011 2.3E-07 63.0 5.7 97 217-318 46-148 (374)
226 COG0144 Sun tRNA and rRNA cyto 95.9 0.041 8.9E-07 58.2 10.0 106 214-319 155-290 (355)
227 COG3897 Predicted methyltransf 95.9 0.038 8.3E-07 53.4 8.3 98 214-317 78-178 (218)
228 PF08123 DOT1: Histone methyla 95.8 0.023 5.1E-07 55.5 6.9 114 192-315 27-156 (205)
229 PF10672 Methyltrans_SAM: S-ad 95.7 0.034 7.3E-07 57.1 8.1 102 216-319 124-240 (286)
230 PRK13699 putative methylase; P 95.6 0.04 8.8E-07 54.6 7.9 82 265-359 4-101 (227)
231 PF03602 Cons_hypoth95: Conser 95.6 0.018 3.9E-07 55.3 5.2 131 176-318 10-154 (183)
232 PLN02668 indole-3-acetate carb 95.4 0.097 2.1E-06 55.9 10.2 47 272-319 155-239 (386)
233 KOG3420 Predicted RNA methylas 95.3 0.011 2.3E-07 54.6 2.3 71 216-287 49-122 (185)
234 PF03492 Methyltransf_7: SAM d 95.2 0.059 1.3E-06 56.5 8.0 104 214-318 15-184 (334)
235 COG0742 N6-adenine-specific me 95.1 0.22 4.7E-06 48.0 10.7 133 176-318 11-155 (187)
236 COG4798 Predicted methyltransf 95.1 0.14 3.1E-06 49.5 9.3 135 215-351 48-206 (238)
237 KOG0820 Ribosomal RNA adenine 95.1 0.11 2.4E-06 52.6 8.8 65 215-286 58-130 (315)
238 COG1889 NOP1 Fibrillarin-like 95.0 0.93 2E-05 44.3 14.4 155 186-351 52-215 (231)
239 PF03059 NAS: Nicotianamine sy 94.8 0.15 3.3E-06 52.0 9.4 102 215-317 120-230 (276)
240 PRK11783 rlmL 23S rRNA m(2)G24 94.8 0.097 2.1E-06 60.3 8.8 103 216-318 191-348 (702)
241 PF05958 tRNA_U5-meth_tr: tRNA 94.7 0.03 6.4E-07 59.2 4.0 54 218-272 199-255 (352)
242 PF13679 Methyltransf_32: Meth 94.6 0.13 2.9E-06 46.8 7.7 98 214-321 24-135 (141)
243 PF04816 DUF633: Family of unk 94.6 0.2 4.3E-06 49.0 9.2 117 219-350 1-124 (205)
244 COG4262 Predicted spermidine s 94.5 0.18 4E-06 53.0 9.1 156 180-347 259-433 (508)
245 PRK00050 16S rRNA m(4)C1402 me 94.1 0.097 2.1E-06 54.0 6.2 73 216-288 20-99 (296)
246 PF00398 RrnaAD: Ribosomal RNA 93.9 0.19 4E-06 50.8 7.7 103 192-309 15-123 (262)
247 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.5 0.083 1.8E-06 54.1 4.4 104 215-318 85-220 (283)
248 KOG3115 Methyltransferase-like 93.5 0.086 1.9E-06 51.2 4.1 99 218-317 63-183 (249)
249 COG4076 Predicted RNA methylas 92.9 0.11 2.4E-06 49.9 3.9 91 217-314 34-132 (252)
250 KOG2187 tRNA uracil-5-methyltr 92.9 0.1 2.2E-06 57.0 4.0 54 217-271 385-441 (534)
251 PF13578 Methyltransf_24: Meth 92.9 0.028 6.1E-07 48.2 -0.2 94 220-317 1-105 (106)
252 PRK11524 putative methyltransf 92.8 0.29 6.4E-06 50.0 7.2 82 264-359 10-108 (284)
253 COG5459 Predicted rRNA methyla 92.7 0.63 1.4E-05 48.8 9.3 104 215-320 113-228 (484)
254 PF05971 Methyltransf_10: Prot 92.6 0.36 7.9E-06 49.8 7.4 94 190-287 80-185 (299)
255 PF04672 Methyltransf_19: S-ad 92.5 0.99 2.1E-05 45.9 10.3 96 215-318 68-191 (267)
256 PF10354 DUF2431: Domain of un 92.2 1.5 3.2E-05 41.5 10.5 119 222-350 3-152 (166)
257 COG3129 Predicted SAM-dependen 91.8 0.38 8.3E-06 47.8 6.2 97 189-288 54-162 (292)
258 KOG2198 tRNA cytosine-5-methyl 91.8 2.7 5.8E-05 44.5 12.7 121 195-318 138-297 (375)
259 COG0116 Predicted N6-adenine-s 91.7 0.73 1.6E-05 49.1 8.6 103 217-319 193-346 (381)
260 PF01861 DUF43: Protein of unk 91.7 3 6.6E-05 41.8 12.4 127 215-352 44-180 (243)
261 PF09445 Methyltransf_15: RNA 91.3 0.26 5.6E-06 46.5 4.3 64 218-286 2-76 (163)
262 TIGR01444 fkbM_fam methyltrans 90.4 0.27 5.8E-06 44.2 3.4 19 218-236 1-19 (143)
263 KOG1122 tRNA and rRNA cytosine 90.0 1.3 2.9E-05 47.4 8.7 106 213-320 239-374 (460)
264 PF06859 Bin3: Bicoid-interact 89.7 0.25 5.4E-06 43.5 2.4 38 279-317 1-44 (110)
265 COG1064 AdhP Zn-dependent alco 89.4 1.1 2.3E-05 47.3 7.3 96 214-319 165-261 (339)
266 KOG2793 Putative N2,N2-dimethy 88.7 2.4 5.2E-05 42.7 8.9 38 280-318 163-200 (248)
267 PF07091 FmrO: Ribosomal RNA m 87.6 4.3 9.2E-05 40.9 9.9 129 215-348 105-242 (251)
268 PF03269 DUF268: Caenorhabditi 86.9 0.71 1.5E-05 43.5 3.7 70 278-348 62-143 (177)
269 KOG4589 Cell division protein 86.0 6 0.00013 38.4 9.4 92 215-317 69-184 (232)
270 cd00315 Cyt_C5_DNA_methylase C 85.8 7.8 0.00017 39.4 11.0 135 218-358 2-151 (275)
271 COG2384 Predicted SAM-dependen 84.5 18 0.00039 35.9 12.3 118 218-349 19-142 (226)
272 KOG0822 Protein kinase inhibit 84.3 2.5 5.4E-05 46.7 6.8 126 216-343 368-504 (649)
273 PRK01747 mnmC bifunctional tRN 84.1 2.5 5.3E-05 48.4 7.2 75 264-350 150-227 (662)
274 cd08283 FDH_like_1 Glutathione 83.5 5.1 0.00011 42.4 8.9 100 216-318 185-307 (386)
275 PF06962 rRNA_methylase: Putat 83.3 3.3 7.1E-05 38.1 6.2 98 247-347 6-122 (140)
276 PF04989 CmcI: Cephalosporin h 83.1 1.8 3.9E-05 42.4 4.7 99 216-317 33-147 (206)
277 PF01555 N6_N4_Mtase: DNA meth 82.6 2.2 4.8E-05 40.8 5.2 57 291-358 30-87 (231)
278 KOG1596 Fibrillarin and relate 82.3 7.8 0.00017 39.0 8.8 97 215-318 156-262 (317)
279 PRK09424 pntA NAD(P) transhydr 81.9 6.4 0.00014 43.8 9.0 100 215-317 164-285 (509)
280 PF07757 AdoMet_MTase: Predict 81.5 1.5 3.3E-05 38.6 3.2 27 215-241 58-84 (112)
281 cd08254 hydroxyacyl_CoA_DH 6-h 80.2 6.4 0.00014 40.0 7.9 92 216-317 166-263 (338)
282 KOG1099 SAM-dependent methyltr 79.9 2.2 4.7E-05 42.5 4.0 111 216-341 42-183 (294)
283 COG0286 HsdM Type I restrictio 79.4 13 0.00029 41.1 10.5 120 193-320 172-329 (489)
284 PRK09880 L-idonate 5-dehydroge 78.1 8.2 0.00018 40.0 8.1 94 216-318 170-267 (343)
285 KOG1562 Spermidine synthase [A 76.6 6.3 0.00014 40.7 6.3 103 214-319 120-238 (337)
286 KOG2920 Predicted methyltransf 75.0 1.6 3.6E-05 44.5 1.7 41 279-320 196-237 (282)
287 COG1565 Uncharacterized conser 74.5 4 8.8E-05 43.2 4.5 78 174-259 44-128 (370)
288 PF03514 GRAS: GRAS domain fam 73.6 21 0.00046 38.1 9.8 104 215-320 110-246 (374)
289 PF14740 DUF4471: Domain of un 73.4 6.8 0.00015 40.4 5.7 63 278-346 221-285 (289)
290 PF02005 TRM: N2,N2-dimethylgu 71.3 5.9 0.00013 42.4 5.0 135 179-318 12-155 (377)
291 PHA01634 hypothetical protein 70.5 19 0.00041 32.9 7.1 38 216-258 29-69 (156)
292 cd08245 CAD Cinnamyl alcohol d 68.4 24 0.00051 35.9 8.6 93 216-317 163-256 (330)
293 PF00107 ADH_zinc_N: Zinc-bind 68.3 5.8 0.00013 34.6 3.5 84 225-318 1-90 (130)
294 KOG4058 Uncharacterized conser 66.4 13 0.00028 34.8 5.3 84 196-284 58-145 (199)
295 cd05188 MDR Medium chain reduc 65.8 25 0.00053 34.0 7.8 92 215-318 134-233 (271)
296 PF11899 DUF3419: Protein of u 65.6 14 0.0003 39.7 6.3 60 257-317 271-334 (380)
297 KOG0024 Sorbitol dehydrogenase 65.4 26 0.00057 36.8 8.0 97 214-317 168-273 (354)
298 TIGR02822 adh_fam_2 zinc-bindi 65.0 33 0.00071 35.4 8.9 89 215-317 165-254 (329)
299 cd08234 threonine_DH_like L-th 63.2 38 0.00082 34.4 8.9 94 215-318 159-258 (334)
300 TIGR00675 dcm DNA-methyltransf 63.1 18 0.0004 37.5 6.6 126 219-351 1-141 (315)
301 PF05430 Methyltransf_30: S-ad 62.8 18 0.00039 32.5 5.6 61 278-350 49-111 (124)
302 cd08232 idonate-5-DH L-idonate 62.4 33 0.00071 35.0 8.3 93 216-317 166-262 (339)
303 TIGR00561 pntA NAD(P) transhyd 61.7 16 0.00036 40.6 6.1 96 215-315 163-282 (511)
304 COG3510 CmcI Cephalosporin hyd 58.2 18 0.0004 35.2 5.0 100 214-318 68-181 (237)
305 cd08230 glucose_DH Glucose deh 58.1 37 0.00081 35.2 7.9 91 216-317 173-269 (355)
306 KOG2651 rRNA adenine N-6-methy 58.0 16 0.00034 39.2 4.9 39 214-254 152-190 (476)
307 COG1568 Predicted methyltransf 57.7 41 0.00088 34.7 7.6 118 215-347 152-285 (354)
308 TIGR03451 mycoS_dep_FDH mycoth 56.1 42 0.00091 34.9 7.9 93 215-317 176-276 (358)
309 KOG1253 tRNA methyltransferase 55.3 12 0.00026 41.2 3.6 100 215-319 109-218 (525)
310 TIGR00027 mthyl_TIGR00027 meth 55.0 2.4E+02 0.0052 28.5 14.6 103 216-318 82-198 (260)
311 PF07927 YcfA: YcfA-like prote 54.9 24 0.00051 26.5 4.3 31 331-361 1-31 (56)
312 KOG2539 Mitochondrial/chloropl 54.9 11 0.00024 41.2 3.2 105 214-320 199-318 (491)
313 TIGR02825 B4_12hDH leukotriene 54.2 68 0.0015 32.6 9.0 93 215-317 138-237 (325)
314 TIGR00853 pts-lac PTS system, 52.9 22 0.00049 30.3 4.3 75 217-314 4-78 (95)
315 TIGR03366 HpnZ_proposed putati 52.6 46 0.001 33.3 7.3 92 216-317 121-218 (280)
316 COG4301 Uncharacterized conser 52.5 65 0.0014 32.8 7.9 100 216-317 79-193 (321)
317 cd08255 2-desacetyl-2-hydroxye 52.0 67 0.0015 31.6 8.3 92 215-317 97-190 (277)
318 cd08237 ribitol-5-phosphate_DH 51.2 49 0.0011 34.2 7.4 92 216-317 164-256 (341)
319 cd08239 THR_DH_like L-threonin 50.4 59 0.0013 33.2 7.8 93 216-317 164-262 (339)
320 TIGR01202 bchC 2-desacetyl-2-h 49.6 56 0.0012 33.3 7.4 84 217-317 146-231 (308)
321 PRK15001 SAM-dependent 23S rib 49.2 1.6E+02 0.0036 31.5 11.1 94 218-317 47-142 (378)
322 TIGR00006 S-adenosyl-methyltra 49.0 54 0.0012 34.2 7.1 70 216-286 21-99 (305)
323 KOG1501 Arginine N-methyltrans 48.9 28 0.0006 38.0 5.0 58 194-258 47-107 (636)
324 COG1867 TRM1 N2,N2-dimethylgua 48.1 43 0.00094 35.7 6.3 98 216-319 53-156 (380)
325 cd08281 liver_ADH_like1 Zinc-d 47.9 55 0.0012 34.2 7.2 92 216-317 192-290 (371)
326 PRK10742 putative methyltransf 47.5 63 0.0014 32.7 7.1 68 218-287 91-172 (250)
327 PLN03154 putative allyl alcoho 47.4 86 0.0019 32.6 8.6 93 215-317 158-258 (348)
328 PF00145 DNA_methylase: C-5 cy 46.7 49 0.0011 33.4 6.5 128 218-352 2-144 (335)
329 PF13051 DUF3912: Protein of u 46.1 4.5 9.7E-05 31.3 -0.9 10 505-514 57-66 (68)
330 cd05564 PTS_IIB_chitobiose_lic 46.1 44 0.00096 28.4 5.1 78 222-321 4-82 (96)
331 cd05565 PTS_IIB_lactose PTS_II 45.5 33 0.00071 29.7 4.2 77 219-318 3-79 (99)
332 PF05711 TylF: Macrocin-O-meth 45.5 2.1E+02 0.0047 28.8 10.6 86 262-357 158-247 (248)
333 KOG2671 Putative RNA methylase 45.4 46 0.001 35.3 5.9 104 215-318 208-355 (421)
334 KOG1227 Putative methyltransfe 45.3 7.8 0.00017 40.1 0.3 129 167-312 154-290 (351)
335 cd08261 Zn_ADH7 Alcohol dehydr 43.8 1E+02 0.0022 31.4 8.3 92 216-317 160-258 (337)
336 TIGR03201 dearomat_had 6-hydro 42.1 90 0.002 32.3 7.7 93 215-317 166-272 (349)
337 PRK09590 celB cellobiose phosp 41.9 89 0.0019 27.2 6.3 82 218-322 3-87 (104)
338 PRK10458 DNA cytosine methylas 41.8 3.8E+02 0.0081 29.7 12.6 147 194-346 68-255 (467)
339 PF07629 DUF1590: Protein of u 40.9 16 0.00034 24.3 1.1 19 120-138 5-23 (32)
340 KOG2730 Methylase [General fun 40.6 22 0.00047 35.5 2.5 66 216-286 95-172 (263)
341 COG1063 Tdh Threonine dehydrog 40.5 1.5E+02 0.0033 31.1 9.1 95 217-319 170-271 (350)
342 PF02254 TrkA_N: TrkA-N domain 40.1 1.4E+02 0.003 25.3 7.4 88 224-318 4-97 (116)
343 PF01555 N6_N4_Mtase: DNA meth 39.7 62 0.0013 30.6 5.7 38 216-258 192-231 (231)
344 COG0270 Dcm Site-specific DNA 39.2 1.3E+02 0.0029 31.2 8.4 124 217-346 4-143 (328)
345 PRK10309 galactitol-1-phosphat 39.2 1.2E+02 0.0026 31.1 8.1 93 216-317 161-260 (347)
346 PLN02740 Alcohol dehydrogenase 38.7 1.1E+02 0.0024 32.2 7.8 94 215-317 198-300 (381)
347 PLN02586 probable cinnamyl alc 38.3 70 0.0015 33.4 6.2 93 216-317 184-278 (360)
348 cd05278 FDH_like Formaldehyde 38.0 1.1E+02 0.0024 31.1 7.5 93 215-317 167-267 (347)
349 cd00401 AdoHcyase S-adenosyl-L 37.8 1.1E+02 0.0023 33.3 7.6 88 215-318 201-290 (413)
350 PRK11524 putative methyltransf 37.5 1.2E+02 0.0025 30.9 7.5 40 215-259 208-249 (284)
351 cd08294 leukotriene_B4_DH_like 37.5 1.2E+02 0.0027 30.4 7.8 91 216-317 144-241 (329)
352 PTZ00357 methyltransferase; Pr 37.3 93 0.002 36.1 7.0 102 217-320 702-842 (1072)
353 PRK09548 PTS system ascorbate- 37.3 1.1E+02 0.0023 35.0 7.6 59 214-287 504-562 (602)
354 COG0604 Qor NADPH:quinone redu 37.1 76 0.0016 33.1 6.2 93 216-318 143-242 (326)
355 PRK13699 putative methylase; P 36.2 1.1E+02 0.0024 30.3 6.8 40 215-259 163-204 (227)
356 cd08236 sugar_DH NAD(P)-depend 35.2 1.7E+02 0.0036 29.8 8.4 92 216-317 160-258 (343)
357 cd05285 sorbitol_DH Sorbitol d 34.7 1.8E+02 0.0038 29.8 8.5 92 216-317 163-265 (343)
358 PLN02827 Alcohol dehydrogenase 34.4 1.3E+02 0.0028 31.7 7.5 94 215-317 193-295 (378)
359 cd08295 double_bond_reductase_ 34.1 1.7E+02 0.0037 29.8 8.3 93 215-317 151-251 (338)
360 COG0863 DNA modification methy 33.6 85 0.0018 31.5 5.8 52 296-360 78-129 (302)
361 cd08285 NADP_ADH NADP(H)-depen 33.6 1.6E+02 0.0035 30.2 7.9 92 216-317 167-266 (351)
362 PF13334 DUF4094: Domain of un 33.2 23 0.0005 30.4 1.3 17 23-39 5-21 (95)
363 TIGR02819 fdhA_non_GSH formald 31.2 2.3E+02 0.005 30.1 8.8 99 216-318 186-300 (393)
364 cd08298 CAD2 Cinnamyl alcohol 30.6 2.6E+02 0.0055 28.2 8.8 85 217-317 169-256 (329)
365 PLN02178 cinnamyl-alcohol dehy 29.5 1.1E+02 0.0024 32.3 6.0 93 216-317 179-273 (375)
366 cd08279 Zn_ADH_class_III Class 29.5 2.4E+02 0.0053 29.2 8.6 91 216-318 183-283 (363)
367 cd05281 TDH Threonine dehydrog 29.2 2.7E+02 0.0058 28.4 8.7 93 216-318 164-263 (341)
368 KOG4174 Uncharacterized conser 29.0 4.4E+02 0.0096 27.0 9.6 123 216-348 57-215 (282)
369 cd08293 PTGR2 Prostaglandin re 28.8 2E+02 0.0043 29.3 7.7 90 217-317 156-254 (345)
370 cd08231 MDR_TM0436_like Hypoth 28.5 3.2E+02 0.0069 28.1 9.2 94 215-318 177-281 (361)
371 TIGR00692 tdh L-threonine 3-de 28.4 3.2E+02 0.007 27.8 9.2 93 216-318 162-262 (340)
372 cd08242 MDR_like Medium chain 28.1 2.6E+02 0.0056 28.1 8.3 88 216-316 156-244 (319)
373 PRK10310 PTS system galactitol 27.3 1.1E+02 0.0024 25.9 4.5 54 219-287 5-58 (94)
374 TIGR02818 adh_III_F_hyde S-(hy 26.9 2.4E+02 0.0053 29.4 8.0 93 216-317 186-287 (368)
375 cd08277 liver_alcohol_DH_like 26.4 2.4E+02 0.0052 29.3 7.8 93 216-317 185-286 (365)
376 PF12273 RCR: Chitin synthesis 26.2 58 0.0013 29.2 2.7 8 13-20 2-9 (130)
377 cd08300 alcohol_DH_class_III c 26.1 2.6E+02 0.0056 29.1 8.1 93 216-317 187-288 (368)
378 COG4093 Uncharacterized protei 26.1 53 0.0012 34.1 2.7 33 3-38 4-36 (338)
379 COG0287 TyrA Prephenate dehydr 26.1 2.1E+02 0.0045 29.4 7.0 90 217-314 4-95 (279)
380 COG0373 HemA Glutamyl-tRNA red 25.9 1.3E+02 0.0029 32.6 5.8 76 215-295 177-254 (414)
381 PF11253 DUF3052: Protein of u 25.9 2.5E+02 0.0055 25.5 6.6 73 278-355 44-116 (127)
382 KOG2918 Carboxymethyl transfer 25.8 1.2E+02 0.0026 31.7 5.2 41 216-256 88-129 (335)
383 PF02636 Methyltransf_28: Puta 24.2 59 0.0013 32.4 2.7 44 216-259 19-69 (252)
384 cd01842 SGNH_hydrolase_like_5 23.3 4.5E+02 0.0097 25.4 8.1 43 275-317 46-99 (183)
385 PF14881 Tubulin_3: Tubulin do 23.2 53 0.0011 31.4 2.0 29 463-491 80-117 (180)
386 cd08263 Zn_ADH10 Alcohol dehyd 23.2 2.4E+02 0.0051 29.3 7.1 92 216-317 188-287 (367)
387 cd08233 butanediol_DH_like (2R 23.1 3.2E+02 0.007 27.9 8.0 92 216-317 173-272 (351)
388 COG3414 SgaB Phosphotransferas 22.8 2E+02 0.0044 24.5 5.2 54 219-287 4-57 (93)
389 COG1255 Uncharacterized protei 22.7 2E+02 0.0043 25.9 5.2 83 217-312 15-99 (129)
390 TIGR00518 alaDH alanine dehydr 22.4 76 0.0017 33.8 3.2 99 215-316 166-266 (370)
391 PRK05708 2-dehydropantoate 2-r 22.1 5.2E+02 0.011 26.4 9.2 93 217-317 3-104 (305)
392 PLN02514 cinnamyl-alcohol dehy 21.8 2.6E+02 0.0056 29.1 7.0 32 279-317 244-275 (357)
393 cd08241 QOR1 Quinone oxidoredu 21.7 3.7E+02 0.008 26.3 7.9 92 215-317 139-238 (323)
394 PRK10499 PTS system N,N'-diace 21.3 5.4E+02 0.012 22.2 8.6 80 218-321 5-84 (106)
395 TIGR00497 hsdM type I restrict 20.9 6.8E+02 0.015 27.7 10.4 105 216-320 218-358 (501)
396 PF11312 DUF3115: Protein of u 20.8 1.7E+02 0.0038 30.6 5.2 60 262-321 176-247 (315)
397 PF05781 MRVI1: MRVI1 protein; 20.5 89 0.0019 34.9 3.2 27 13-39 478-504 (538)
398 PF06557 DUF1122: Protein of u 20.3 2.3E+02 0.0049 27.0 5.4 47 297-347 66-120 (170)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=2.4e-127 Score=1005.76 Aligned_cols=419 Identities=56% Similarity=1.030 Sum_probs=399.1
Q ss_pred CcccCCChhHHhHhhcCCCcccccccccCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhccCCCCcccccccccccc
Q 009946 93 ELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWM 172 (522)
Q Consensus 93 ~~~pc~d~~~~~~~~~~~~~~~~~~~er~Cp~~~~~~~Clvp~P~~Y~~P~~WP~srd~~W~~n~~~~~L~~~k~~q~W~ 172 (522)
|||||+|+.++.+. +.++++|+|||||||+.+++++||||+|++|+.|++||+|||++|++|+||++|+++|+.|+|+
T Consensus 1 dy~PC~D~~~~~~~--~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv 78 (506)
T PF03141_consen 1 DYIPCLDNSRAIKF--LLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWV 78 (506)
T ss_pred CCcCCCCHHHHHhh--ccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccce
Confidence 79999999986543 3589999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHH
Q 009946 173 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQ 252 (522)
Q Consensus 173 ~~~g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~ 252 (522)
+.+|+.+.|||++++|.+|+.+|++.|.++++.. ..++.++++||||||+|+|+++|++++|+++++++.|.++++
T Consensus 79 ~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~q 154 (506)
T PF03141_consen 79 RVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQ 154 (506)
T ss_pred eecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchh
Confidence 9999999999999999999999999999999863 335788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCC-CCChhHHHHH
Q 009946 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIW 331 (522)
Q Consensus 253 i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~-~~~~e~~~~~ 331 (522)
+|+|.+||+++.+.+...++|||++++||+|||+.|.+.|.++.+.+|.|++|+|||||+|+++.|+.+ ...++....|
T Consensus 155 vqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~ 234 (506)
T PF03141_consen 155 VQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEW 234 (506)
T ss_pred hhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHH
Confidence 999999999999988889999999999999999999999999999999999999999999999999998 4455677899
Q ss_pred HHHHHHHHhcCcEEEEEecceEEEeccCCcccccccCCCCCCCCCCCCCCCCcccccccccccccCccCcccccCCCCCC
Q 009946 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 411 (522)
Q Consensus 332 ~~l~~l~~~~g~~~v~~~~~~~iw~Kp~~~~c~~~r~~~~~p~lC~~~~~~d~~wY~~L~~ci~~~~~~~~~~~~~~~~~ 411 (522)
++++++++++||+++.++++++|||||.+++||..|+..+.|++|+++++||++||++|++|||++|+..+..+++++++
T Consensus 235 ~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 235 NAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999999999999999999999999999999988889999998899999999999999999998766667899999
Q ss_pred CCCCCCCCCCCccc---cCCChhHHHHHHhhHHHHHHHHHHHhhhccccCcccccccccccchhHHhhhcCCCceeeeec
Q 009946 412 WPARLTAPPPRLEE---VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVA 488 (522)
Q Consensus 412 wp~rl~~~p~~~~~---~g~~~~~~~~d~~~W~~~v~~y~~~~~~~~~~~~~rnvmdm~a~~ggfaaal~~~~~wvmnvv 488 (522)
||+||+++|+||.. .|+++|+|++|+++|+++|++||+++...+++++|||||||||+||||||||+++||||||||
T Consensus 315 WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVV 394 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVV 394 (506)
T ss_pred ChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEec
Confidence 99999999999998 899999999999999999999999888789999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeccccccccccccccCCC
Q 009946 489 PVRMSARLKIIYDRGLIGTVHDCFFRDRG 517 (522)
Q Consensus 489 p~~~~~tl~~i~~rglig~~hdwce~~~~ 517 (522)
|+.++|||+|||||||||+||||||+|+-
T Consensus 395 P~~~~ntL~vIydRGLIG~yhDWCE~fsT 423 (506)
T PF03141_consen 395 PVSGPNTLPVIYDRGLIGVYHDWCEAFST 423 (506)
T ss_pred ccCCCCcchhhhhcccchhccchhhccCC
Confidence 99999999999999999999999999974
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=2.6e-16 Score=155.58 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=89.8
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCC-----eEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIP-----STLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~-----~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
++.+|||||||||.++..+++..- ...+.+.|+++.|++.|+++..+ +.+.++|++.|||+|++||+|.+++ .
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-g 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-G 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-h
Confidence 457899999999999999998632 45778889999999999888433 7899999999999999999999999 6
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+++++|.+.+|+|++|||||||.+++..
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 9999999999999999999999998765
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.66 E-value=2e-16 Score=156.74 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=76.6
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc-----CCCeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r-----g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
++.+|||+|||||.++..++++.-....+.+.|+++.|++.|+++ ..++.+.++|++++|+++++||+|+|++ .
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-g 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-G 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-h
Confidence 346899999999999999987522234667778889999888876 2378999999999999999999999999 5
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
++..+|....|+|++|+|||||++++.+
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 8889999999999999999999999866
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=2.2e-15 Score=125.53 Aligned_cols=93 Identities=29% Similarity=0.488 Sum_probs=79.5
Q ss_pred EEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCceEEEeccccccchhhhH
Q 009946 220 LDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297 (522)
Q Consensus 220 LDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~--~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~ 297 (522)
||+|||+|.++..|+++ .+.++.+.|+++.+++.++++.. ...+...+..++|+++++||+|++.. +++|.++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeeccCHH
Confidence 89999999999999987 56678888999999999998854 35588999999999999999999888 588888999
Q ss_pred HHHHHHHHhCCCCeEEEE
Q 009946 298 ILLLELDRLLRPGGYFVY 315 (522)
Q Consensus 298 ~~L~ei~RvLkPGG~lvi 315 (522)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.60 E-value=1.8e-14 Score=145.14 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=84.2
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC--------CCeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG--------IPSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg--------~~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
..+|||+|||+|.++..|+++.-....+.+.|+++.|++.|+++. .++.+..+|++++|+++++||+|+++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 468999999999999888764111125566688888888886542 357889999999999999999999888
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
++|+.+++..++.|+.|+|||||++++.+.
T Consensus 154 -~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 154 -GLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred -ccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 588899999999999999999999998864
No 6
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.56 E-value=8.9e-15 Score=134.13 Aligned_cols=139 Identities=29% Similarity=0.454 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCC
Q 009946 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL 273 (522)
Q Consensus 194 ~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~l 273 (522)
.+.+.+.++.+.. ....+|||||||+|.++..|++. +.++.+.|+++.++.. ........+....
T Consensus 8 ~~~~~~~~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----~~~~~~~~~~~~~ 72 (161)
T PF13489_consen 8 AYADLLERLLPRL-------KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----RNVVFDNFDAQDP 72 (161)
T ss_dssp CHHHHHHHHHTCT-------TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----TTSEEEEEECHTH
T ss_pred HHHHHHHHHhccc-------CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----hhhhhhhhhhhhh
Confidence 3444555555421 33478999999999999999876 4477777888887766 3334444444455
Q ss_pred CCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCC----------CChh---H--HHHHHHHHHHH
Q 009946 274 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA----------HDPE---N--RRIWNAMYDLL 338 (522)
Q Consensus 274 pf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~----------~~~e---~--~~~~~~l~~l~ 338 (522)
+.++++||+|+|+. +++|++++..+|.++.++|||||+++++++.... .... . ...-+++..++
T Consensus 73 ~~~~~~fD~i~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 151 (161)
T PF13489_consen 73 PFPDGSFDLIICND-VLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLL 151 (161)
T ss_dssp HCHSSSEEEEEEES-SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHH
T ss_pred hccccchhhHhhHH-HHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHH
Confidence 56778999999987 6999999999999999999999999999986421 1110 0 01124899999
Q ss_pred HhcCcEEEEE
Q 009946 339 KSMCWKIVSK 348 (522)
Q Consensus 339 ~~~g~~~v~~ 348 (522)
+++||+++++
T Consensus 152 ~~~G~~iv~~ 161 (161)
T PF13489_consen 152 EQAGFEIVEE 161 (161)
T ss_dssp HHTTEEEEE-
T ss_pred HHCCCEEEEC
Confidence 9999998863
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.56 E-value=5.6e-14 Score=146.67 Aligned_cols=102 Identities=20% Similarity=0.333 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
....+|||||||+|.++..|+++. +..+.+.|+++.+++.++++ +. ++.+.++|...+|+++++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 345789999999999999998752 34555667777777766543 33 57899999999999999999999888
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
.++|.++...++.++.|+|||||.|++++.
T Consensus 195 -~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 195 -SGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -chhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 588888999999999999999999999874
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.55 E-value=6.7e-14 Score=141.08 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=113.6
Q ss_pred CCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---CC
Q 009946 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IP 262 (522)
Q Consensus 186 ~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---~~ 262 (522)
..++.+.......+.+.+.+. +..+|||||||+|..+..|+.. .+..+.+.|+++.+++.|+++. .+
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~--------~~~~VLDiGcG~G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~~~ 100 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELN--------ENSKVLDIGSGLGGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSDKNK 100 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCC--------CCCEEEEEcCCCChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCcCCc
Confidence 344444444455555555432 3468999999999999888764 2456777788899988888763 35
Q ss_pred eEEEEeCCCCCCCCCCCceEEEeccccccchh--hhHHHHHHHHHhCCCCeEEEEEeCCCCC--C-ChhHHH--------
Q 009946 263 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA--H-DPENRR-------- 329 (522)
Q Consensus 263 ~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~--d~~~~L~ei~RvLkPGG~lvis~P~~~~--~-~~e~~~-------- 329 (522)
+.+...|+...|+++++||+|++..+ ++|.. +...+|++++++|||||+|+++++.... . ......
T Consensus 101 i~~~~~D~~~~~~~~~~FD~V~s~~~-l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~ 179 (263)
T PTZ00098 101 IEFEANDILKKDFPENTFDMIYSRDA-ILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYT 179 (263)
T ss_pred eEEEECCcccCCCCCCCeEEEEEhhh-HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCC
Confidence 78888888888999999999998774 44543 6788999999999999999998753211 0 111100
Q ss_pred --HHHHHHHHHHhcCcEEEEEecceEEEe
Q 009946 330 --IWNAMYDLLKSMCWKIVSKKDQTVIWA 356 (522)
Q Consensus 330 --~~~~l~~l~~~~g~~~v~~~~~~~iw~ 356 (522)
.-.++.++++++||+.+..++.+..|.
T Consensus 180 ~~~~~~~~~~l~~aGF~~v~~~d~~~~~~ 208 (263)
T PTZ00098 180 LIPIQEYGDLIKSCNFQNVVAKDISDYWL 208 (263)
T ss_pred CCCHHHHHHHHHHCCCCeeeEEeCcHHHH
Confidence 123788889999999887766554443
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.52 E-value=4.7e-14 Score=145.96 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=104.7
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
...+|||||||+|.++..|+.. +..+.+.|.++.+++.|+++ + .++.+...+++++++++++||+|+|..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~- 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE- 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh-
Confidence 3468999999999999999875 44666778888888888754 1 257788888889988888999999988
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCC---------------ChhHHH------HHHHHHHHHHhcCcEEEE
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------------DPENRR------IWNAMYDLLKSMCWKIVS 347 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~---------------~~e~~~------~~~~l~~l~~~~g~~~v~ 347 (522)
+++|+.++..+|.++.++|||||.+++++++.... .+...+ .-+++..++++.||++++
T Consensus 207 vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 207 VIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 79999999999999999999999999998653210 000001 124899999999999997
Q ss_pred Eecce
Q 009946 348 KKDQT 352 (522)
Q Consensus 348 ~~~~~ 352 (522)
..+..
T Consensus 287 ~~G~~ 291 (322)
T PLN02396 287 MAGFV 291 (322)
T ss_pred EeeeE
Confidence 76543
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=1.4e-13 Score=137.22 Aligned_cols=102 Identities=23% Similarity=0.403 Sum_probs=88.4
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
...+|||+|||+|.++..|+.. +..+.+.|+++.+++.++++.....+..+|.+.+|+++++||+|+++. .++|..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~~ 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWCG 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhcC
Confidence 3468999999999999988765 346677788999999998886666778889999999999999999887 689999
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
++..+|.++.|+|||||.++++++..
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999999999999999999988653
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=1.8e-13 Score=136.85 Aligned_cols=100 Identities=21% Similarity=0.372 Sum_probs=83.4
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
...+|||||||+|.++..|+++. .+..+.+.|+++.+++.|++++ +.+..+|+++++ ++++||+|+|+. ++||++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNA-ALQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEeh-hhhhCC
Confidence 34789999999999999998752 2346677788899999998764 567778887775 567999999888 689999
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 295 RDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
++..+++++.++|||||++++..+.
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999998754
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.48 E-value=1.1e-12 Score=128.82 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=81.7
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C-CCeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g-~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
..+|||+|||+|.++..+++..-....+.+.|+++.+++.++++ + .++.+...|...+++++++||+|++.. .+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-GL 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec-cc
Confidence 46899999999999998886421223555667777777776654 2 257788889888888889999999887 58
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
++.++...++.++.++|+|||++++..+
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8888999999999999999999998764
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=5.5e-13 Score=133.51 Aligned_cols=134 Identities=20% Similarity=0.239 Sum_probs=100.5
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCCCC-CCCCCceEEEecc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLP-YPSRSFELAHCSR 287 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~lp-f~d~sFDlVv~s~ 287 (522)
...+|||+|||+|.++..|++. +..+.+.|+++.+++.|+++ + .++.+..++..+++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 3468999999999999999886 34666678888888877665 3 24677888877664 5678999999887
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCC-------------------------ChhHHHHHHHHHHHHHhcC
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-------------------------DPENRRIWNAMYDLLKSMC 342 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~-------------------------~~e~~~~~~~l~~l~~~~g 342 (522)
+++|+.++..++.++.++|||||++++...+.... .+.....-+++.++++++|
T Consensus 121 -vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aG 199 (255)
T PRK11036 121 -VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAG 199 (255)
T ss_pred -HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCC
Confidence 68999999999999999999999999875432100 0000011247888899999
Q ss_pred cEEEEEecce
Q 009946 343 WKIVSKKDQT 352 (522)
Q Consensus 343 ~~~v~~~~~~ 352 (522)
|+++...+..
T Consensus 200 f~~~~~~gi~ 209 (255)
T PRK11036 200 WQIMGKTGVR 209 (255)
T ss_pred CeEeeeeeEE
Confidence 9998777654
No 14
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.44 E-value=2.1e-13 Score=133.46 Aligned_cols=100 Identities=23% Similarity=0.359 Sum_probs=85.1
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCCCCCCCceEEEecccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~ 291 (522)
..+|||||||.|.++..|++. |..+++.|+++..++.|+.+ +..+.+....++++....++||+|+|.. +++
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlE 135 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLE 135 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHH
Confidence 478999999999999999987 45666667788888877644 5566677777777776668999999999 799
Q ss_pred chhhhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
|.++++.+++.+.+++||||.+++++++
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9999999999999999999999999975
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=3.7e-12 Score=138.52 Aligned_cols=133 Identities=27% Similarity=0.357 Sum_probs=100.5
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
+..+|||||||+|.++..|+... +..+.+.|+++.++..|+++ ..++.+...|...+++++++||+|+|.. ++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~-~l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD-TI 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECC-cc
Confidence 35689999999999998888652 44667778888888887664 2357888899888888888999999887 58
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCC--CChhHH----------HHHHHHHHHHHhcCcEEEEEec
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENR----------RIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~--~~~e~~----------~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
+|..++..++.+++|+|||||.++++++.... ...+.. ..-+++.++++++||+++..++
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 88899999999999999999999998753211 011110 1123577888889988875444
No 16
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.42 E-value=2.6e-12 Score=133.70 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=103.7
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg--~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
..+|||||||+|.++..+++. +.+..+.+.|.++.+++.|+++. .++.+..+|.+++++++++||+|+++. ++++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~-~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAG-SIEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcC-hhhhC
Confidence 468999999999998888764 12345666788888888887752 356788889999999989999999877 58888
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEEeCCCCC--CChhHH------HHHHHHHHHHHhcCcEEEEEecceEEE
Q 009946 294 QRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENR------RIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvis~P~~~~--~~~e~~------~~~~~l~~l~~~~g~~~v~~~~~~~iw 355 (522)
++...+|+++.|+|||||.+++..+.... ...... ...+++.++++++||+.++.+.....|
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 88899999999999999999987643210 000000 123578899999999998766544433
No 17
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=6.1e-12 Score=122.56 Aligned_cols=148 Identities=24% Similarity=0.328 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEe
Q 009946 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVL 268 (522)
Q Consensus 193 ~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~ 268 (522)
..+.+.+.+.+.+. ...+|||+|||+|.++..++++......+.+.|+++.+++.++++ ..++.+...
T Consensus 5 ~~~~~~~~~~~~~~--------~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~ 76 (241)
T PRK08317 5 RRYRARTFELLAVQ--------PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG 76 (241)
T ss_pred HHHHHHHHHHcCCC--------CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec
Confidence 44555555555432 346899999999999999886521223566667788888877765 345778888
Q ss_pred CCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCC---C--Ch----hHHHHH--------
Q 009946 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA---H--DP----ENRRIW-------- 331 (522)
Q Consensus 269 d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~---~--~~----e~~~~~-------- 331 (522)
|...+++++++||+|++.. +++|..++..++.++.++|||||++++..+.... . .. +....|
T Consensus 77 d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPW 155 (241)
T ss_pred ccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCc
Confidence 8888888889999999888 5888899999999999999999999998764211 0 00 011111
Q ss_pred --HHHHHHHHhcCcEEEEEe
Q 009946 332 --NAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 332 --~~l~~l~~~~g~~~v~~~ 349 (522)
..+.+++++.||..+...
T Consensus 156 ~~~~~~~~l~~aGf~~~~~~ 175 (241)
T PRK08317 156 LGRRLPGLFREAGLTDIEVE 175 (241)
T ss_pred HHHHHHHHHHHcCCCceeEE
Confidence 256777888888766443
No 18
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.39 E-value=2.1e-12 Score=130.60 Aligned_cols=97 Identities=27% Similarity=0.443 Sum_probs=80.3
Q ss_pred CCeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
..+|||+|||+|.++..|++. ...+..+.+.|+++.+++.|+++..++.+.++|..++|+++++||+|++..+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----
Confidence 367999999999999988764 1112456778999999999988878889999999999999999999997652
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
...+.++.|+|||||+|+++.|..
T Consensus 161 ---~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 ---PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCCHHHHHhhccCCCEEEEEeCCC
Confidence 124689999999999999998765
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.37 E-value=3e-12 Score=128.01 Aligned_cols=103 Identities=23% Similarity=0.335 Sum_probs=86.2
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
+..+|||||||+|.++..|+++. .+..+.+.|+++.+++.|+++..++.+...|+..+. ++++||+|+++. .+||..
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SLQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-ChhhCC
Confidence 34789999999999999998652 234667778889999999888777888888887765 446899999888 589999
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
+...++.++.++|||||.+++..|..
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 99999999999999999999987654
No 20
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.36 E-value=8.7e-12 Score=125.79 Aligned_cols=134 Identities=17% Similarity=0.128 Sum_probs=95.7
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C-CCeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g-~~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
...+|||||||+|..+..++........+.+.|+++.+++.|+++ + .++.+...+++.+++++++||+|++.. +
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~-v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC-V 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC-c
Confidence 357899999999987766654311112355557777777777654 3 357788889999999888999999765 6
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhH----H----------HHHHHHHHHHHhcCcEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN----R----------RIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~----~----------~~~~~l~~l~~~~g~~~v~~~ 349 (522)
+++.++...++.++.|+|||||+|++++.......... . ....++.+++++.||..+...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 88888888999999999999999999763211111111 0 123467888999999887543
No 21
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.36 E-value=3.9e-12 Score=124.91 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=81.5
Q ss_pred CCCCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHc----CC----CeEEEEeCCCCCCCCCCCc
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER----GI----PSTLGVLGTKRLPYPSRSF 280 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~r----g~----~~~~~~~d~~~lpf~d~sF 280 (522)
....++||++||||.++..+.++ +-..-.++..|+++.|+..+++| +. .+.+..+|+++|||++++|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34488999999999999888754 11113344446677777766555 22 3678888999999999999
Q ss_pred eEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 281 DlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
|+.+.++ .+....++++.|+|++|||||||+|.+..
T Consensus 179 D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 179 DAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999888 59999999999999999999999998754
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=2.8e-12 Score=132.98 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=92.9
Q ss_pred CCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHH--HHc----CCCeEEEEeCCCCCCCCCCCceEEEec
Q 009946 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFA--LER----GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A--~~r----g~~~~~~~~d~~~lpf~d~sFDlVv~s 286 (522)
.++|||||||+|.++..+++. .|+|+ |.++.++..+ .++ ..++.+..++++.+|+ +++||+|+|.
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~Gi-----D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~ 196 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGI-----DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSM 196 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEE-----cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEEC
Confidence 478999999999999999875 24555 4555444321 111 3468888889999998 6889999988
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCC-----C-ChhH---------HHHHHHHHHHHHhcCcEEEEEecc
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----H-DPEN---------RRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~-----~-~~e~---------~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
. +++|..++..+|++++++|+|||.+++.+..... . ..+. ...-.++..+++++||+.++....
T Consensus 197 ~-vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 197 G-VLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred C-hhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 7 6888999999999999999999999986521100 0 0000 012247889999999998876554
No 23
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.35 E-value=1.2e-11 Score=120.66 Aligned_cols=103 Identities=24% Similarity=0.374 Sum_probs=86.2
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg-~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
..+|||||||+|.++..+++.. ....+.+.|+++.+++.++++. .++.+...|...+++++++||+|+++. +++|..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l~~~~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-ALQWCD 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hhhhcc
Confidence 4689999999999999998752 2334666788888888887764 356788889889998889999999888 589999
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
++..+|.++.++|+|||.+++.++..
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999999999999999999987654
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.35 E-value=5.6e-12 Score=121.69 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=89.7
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
..+|||+|||+|.++..|+++ +..+.+.|+++.+++.+++. +. ++.+.+.|...++++ ++||+|+|+. ++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTV-VL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEec-ch
Confidence 367999999999999999986 34556667777777665543 33 367777888777775 6799999987 46
Q ss_pred cchh--hhHHHHHHHHHhCCCCeEEEEEe-CC--CCC--CChhHHHHHHHHHHHHHhcCcEEEEEecceEEEec
Q 009946 291 DWLQ--RDGILLLELDRLLRPGGYFVYSS-PE--AYA--HDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 357 (522)
Q Consensus 291 ~~~~--d~~~~L~ei~RvLkPGG~lvis~-P~--~~~--~~~e~~~~~~~l~~l~~~~g~~~v~~~~~~~iw~K 357 (522)
||.. +...++.++.++|||||++++.. .. ... ......-.-.++.+.++ ||+++........+.+
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~ 177 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHR 177 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcc
Confidence 6654 45789999999999999965533 11 110 00011111224555555 8988876555444443
No 25
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.35 E-value=1.5e-11 Score=121.84 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=79.3
Q ss_pred CCeEEEECCCCchHHHHHhhCC-CcccccCcccccHHHHHHHHHc------CCCeEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHD-IIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~-v~gvdis~~Dis~a~i~~A~~r------g~~~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
..+|||||||+|.++..++++- ..+..+.+.|+++.+++.|+++ ..++.+..+|+..++++ .+|+|+++.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~- 130 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF- 130 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec-
Confidence 4679999999999998887641 1245666778888888887765 23578888999888876 489999887
Q ss_pred cccchhh--hHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 289 RIDWLQR--DGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 289 ~l~~~~d--~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
++||..+ ...+++++.|+|+|||.|+++++.
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 5777643 467999999999999999998753
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.35 E-value=3.4e-12 Score=117.64 Aligned_cols=102 Identities=24% Similarity=0.417 Sum_probs=84.4
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCC--CCCCCceEEEeccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lp--f~d~sFDlVv~s~~ 288 (522)
..+|||+|||+|.++..|++....+..+.+.|+++.+++.|+++ +. ++.+.+.|+.+++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~- 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG- 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES-
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC-
Confidence 46899999999999999995322345677778888888888763 44 5899999988887 66 7899999887
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
++++..+...+++++.++|++||.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6889999999999999999999999998865
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.34 E-value=4.8e-12 Score=109.66 Aligned_cols=100 Identities=25% Similarity=0.338 Sum_probs=74.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc------CCCeEEEEeCC-CCCCCCCCCceEEEecc-
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGT-KRLPYPSRSFELAHCSR- 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r------g~~~~~~~~d~-~~lpf~d~sFDlVv~s~- 287 (522)
..+|||||||+|.++..+++. ..+..+.+.|+++.+++.|+++ ..++.+...|+ ...... +.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARL-FPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHH-HTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 367999999999999999882 1144555667777777776655 35789999988 444443 4699999887
Q ss_pred ccccch--hhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 288 CRIDWL--QRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 288 ~~l~~~--~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+..++. ++...+++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 322222 455789999999999999999975
No 28
>PRK05785 hypothetical protein; Provisional
Probab=99.34 E-value=3.9e-12 Score=125.54 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=77.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhh
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d 295 (522)
..+|||||||||.++..|++.. +..+.+.|+++.|++.|+++. .+.+++++.+|+++++||+|+++. .++|.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecC-hhhccCC
Confidence 4689999999999999998762 346777789999999998763 356788999999999999999988 5889999
Q ss_pred hHHHHHHHHHhCCCCe
Q 009946 296 DGILLLELDRLLRPGG 311 (522)
Q Consensus 296 ~~~~L~ei~RvLkPGG 311 (522)
++.+++|++|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 9999999999999953
No 29
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.32 E-value=1.2e-11 Score=120.87 Aligned_cols=132 Identities=22% Similarity=0.259 Sum_probs=95.8
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCCCCCCCCCceEEEecccccc
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~ 291 (522)
+|||||||+|.++..+++.. ....+.+.|+++.+++.++++ + .++.+...|....+++ ++||+|++.. +++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~-~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE-VIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHH-HHH
Confidence 69999999999999888642 123555667778887777664 2 2467777887666665 5899999877 588
Q ss_pred chhhhHHHHHHHHHhCCCCeEEEEEeCCCC--CCCh-h----HHHHHHHHHHHHHhcCcEEEEEecce
Q 009946 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAY--AHDP-E----NRRIWNAMYDLLKSMCWKIVSKKDQT 352 (522)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvis~P~~~--~~~~-e----~~~~~~~l~~l~~~~g~~~v~~~~~~ 352 (522)
|..+...+|.++.++|||||++++.++... .... + ......++.+++++.||+++...+..
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 888889999999999999999999875321 1000 0 01113467788899999998766654
No 30
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.31 E-value=1.6e-11 Score=118.31 Aligned_cols=135 Identities=16% Similarity=0.259 Sum_probs=89.5
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH----cCCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~----rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
.+|||+|||+|.++.+|+++ +..+.+.|+++.+++.+++ .+.++.+...|....+++ ++||+|+|+. ++++
T Consensus 32 ~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTV-VFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEec-cccc
Confidence 67999999999999999976 3455666777777765543 355667777777666665 5799999887 4666
Q ss_pred hh--hhHHHHHHHHHhCCCCeEEEEEe-CC--CCCC--ChhHHHHHHHHHHHHHhcCcEEEEEecceEEEecc
Q 009946 293 LQ--RDGILLLELDRLLRPGGYFVYSS-PE--AYAH--DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358 (522)
Q Consensus 293 ~~--d~~~~L~ei~RvLkPGG~lvis~-P~--~~~~--~~e~~~~~~~l~~l~~~~g~~~v~~~~~~~iw~Kp 358 (522)
.. +...++.+++|+|||||++++.. .. .... .....-...++.++++ +|+++........|.+.
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 53 45789999999999999966543 11 1000 0111122345666665 48888766554444443
No 31
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.30 E-value=1.2e-11 Score=127.72 Aligned_cols=132 Identities=19% Similarity=0.114 Sum_probs=91.7
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHH---HHc---CCCeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFA---LER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A---~~r---g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
.++|||||||+|.++..++.... -.+.+.|.++.++..+ ++. ...+.+...++++++.. .+||+|+|+. +
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-v 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-V 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-h
Confidence 47899999999999888876521 1244445566555432 221 23566777788888865 4899999887 6
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCC------CChhHH---------HHHHHHHHHHHhcCcEEEEEecc
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------HDPENR---------RIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~------~~~e~~---------~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
++|..++..+|.+++|+|||||.|++.+..... ...+.. ..-.++...++++||+.++..+.
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 888899999999999999999999987531100 000000 01237788899999999876654
No 32
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.30 E-value=2.2e-11 Score=116.08 Aligned_cols=127 Identities=22% Similarity=0.284 Sum_probs=95.8
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCC-CC-CCCCCCceEEEeccccccch
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-PYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~-~l-pf~d~sFDlVv~s~~~l~~~ 293 (522)
..+|||+|||.|.+..+|.+.. .++..+.+++++.+..+.++|+++ +++|++ .+ .|++++||.|+++. +++.+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~V--iq~Dld~gL~~f~d~sFD~VIlsq-tLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSV--IQGDLDEGLADFPDQSFDYVILSQ-TLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCE--EECCHHHhHhhCCCCCccEEehHh-HHHhH
Confidence 3789999999999999998742 445556688888899999999875 444532 34 38999999999999 69999
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEEeCCCC-----------------------CCChhHHH--HHHHHHHHHHhcCcEEEEE
Q 009946 294 QRDGILLLELDRLLRPGGYFVYSSPEAY-----------------------AHDPENRR--IWNAMYDLLKSMCWKIVSK 348 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvis~P~~~-----------------------~~~~e~~~--~~~~l~~l~~~~g~~~v~~ 348 (522)
.+++.+|.|+.|+ |...+++.|+.- +++..+.+ ....+++++++.|+++.+.
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 9999999999777 668888888531 12222222 3457888899999988865
Q ss_pred ec
Q 009946 349 KD 350 (522)
Q Consensus 349 ~~ 350 (522)
..
T Consensus 166 ~~ 167 (193)
T PF07021_consen 166 VF 167 (193)
T ss_pred EE
Confidence 54
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.30 E-value=4.6e-12 Score=128.42 Aligned_cols=139 Identities=17% Similarity=0.300 Sum_probs=90.4
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
++.+|||||||.|.++.+++++ .++.+++..+|+.+.+.++++ |. .+.+...|..+++. +||.|++..
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~- 135 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE- 135 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES-
T ss_pred CCCEEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe-
Confidence 4578999999999999999987 255666667788888877655 44 46788888777664 899999887
Q ss_pred cccch--hhhHHHHHHHHHhCCCCeEEEEEeC---CC----CCC-----------ChhHHHHHHHHHHHHHhcCcEEEEE
Q 009946 289 RIDWL--QRDGILLLELDRLLRPGGYFVYSSP---EA----YAH-----------DPENRRIWNAMYDLLKSMCWKIVSK 348 (522)
Q Consensus 289 ~l~~~--~d~~~~L~ei~RvLkPGG~lvis~P---~~----~~~-----------~~e~~~~~~~l~~l~~~~g~~~v~~ 348 (522)
+++|+ .+...+++++.++|||||.+++... .. ... .........++...+++.||++...
T Consensus 136 ~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~ 215 (273)
T PF02353_consen 136 MFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDV 215 (273)
T ss_dssp EGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEE
T ss_pred chhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEE
Confidence 58887 4568899999999999999997542 10 000 0001111336777788999999988
Q ss_pred ecceEEEeccC
Q 009946 349 KDQTVIWAKPI 359 (522)
Q Consensus 349 ~~~~~iw~Kp~ 359 (522)
.+....+.+.+
T Consensus 216 ~~~~~hY~~Tl 226 (273)
T PF02353_consen 216 ENLGRHYARTL 226 (273)
T ss_dssp EE-HHHHHHHH
T ss_pred EEcCcCHHHHH
Confidence 77655444443
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.29 E-value=3.1e-11 Score=120.54 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=77.8
Q ss_pred CCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
..+|||||||+|.++..++.. ...+..+.+.|+++.|++.|+++ +. ++.+...++..++++ .+|+|+++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~- 133 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF- 133 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh-
Confidence 467999999999998888752 12245666778888888887765 22 578888888888775 489999877
Q ss_pred cccchhhh--HHHHHHHHHhCCCCeEEEEEeC
Q 009946 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P 318 (522)
++||+++. ..++.+++++|||||.|++++.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 57777543 5799999999999999999874
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.29 E-value=2.6e-12 Score=110.23 Aligned_cols=93 Identities=27% Similarity=0.451 Sum_probs=73.7
Q ss_pred EEEECCCCchHHHHHhhCC--CcccccCcccccHHHHHHHHHcC----CCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 219 VLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 219 VLDIGCGtG~~a~~La~~~--v~gvdis~~Dis~a~i~~A~~rg----~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
|||+|||+|..+..+...- .....+.+.|+++.+++.++++. .++.+.+.|..++++.+++||+|+|+.++++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999988651 11257778889999999888774 68899999999999888899999997766777
Q ss_pred hhhh--HHHHHHHHHhCCCCe
Q 009946 293 LQRD--GILLLELDRLLRPGG 311 (522)
Q Consensus 293 ~~d~--~~~L~ei~RvLkPGG 311 (522)
..+. ..+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 6543 679999999999998
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.29 E-value=3.5e-11 Score=115.48 Aligned_cols=119 Identities=21% Similarity=0.195 Sum_probs=88.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
..+|||||||+|.++..++... .+..+.+.|.++.+++.|+++ +. ++.+...+..+++. +++||+|+|..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 4789999999999998887531 133455556666666655443 43 47888888888776 67899999754
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
..+...++.++.++|||||++++..+... -.++.++++..||.+.+...
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEeeeEE
Confidence 23567899999999999999999875532 34678888999998876543
No 37
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.25 E-value=1.7e-10 Score=111.74 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=83.6
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---CCeEEEEeCCCCCCCCCCCceEEEecccccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~ 291 (522)
+..+|||+|||+|.++..++........+.+.|+++.+++.++++. .++.+...++.++++++++||+|+++. .++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~-~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF-GLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee-eeC
Confidence 3478999999999999998865321135667788888888877653 357788888888888778999999887 588
Q ss_pred chhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+..+...+++++.++|+|||++++...
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888899999999999999999998663
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.23 E-value=5.5e-11 Score=121.31 Aligned_cols=127 Identities=17% Similarity=0.354 Sum_probs=87.2
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH----cCCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~----rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
.+|||+|||+|.++.+|++. +.++.+.|+++.+++.+++ .+.++.+...|....++ +++||+|+++. ++++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhh
Confidence 47999999999999999876 4466666777777766543 36677777777766655 57899999887 5777
Q ss_pred hh--hhHHHHHHHHHhCCCCeEEEEEeCC---CCCCC-h-hHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 293 LQ--RDGILLLELDRLLRPGGYFVYSSPE---AYAHD-P-ENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 293 ~~--d~~~~L~ei~RvLkPGG~lvis~P~---~~~~~-~-e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
.. +...+++++.++|+|||++++..+. ..... + .....-.++.++.+. |+++....
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e 259 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNE 259 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEec
Confidence 64 4577999999999999997765421 11000 0 111112356666654 88887643
No 39
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.23 E-value=9.9e-12 Score=122.76 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=77.4
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---C----C----eEEEEeCCCCCCCCCCCceEEE
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---I----P----STLGVLGTKRLPYPSRSFELAH 284 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---~----~----~~~~~~d~~~lpf~d~sFDlVv 284 (522)
+++|||+|||+|.++..|++. |.+++++|+++.+++.|++.. + + +.+...+.+.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 367999999999999999986 567777788899999988761 1 1 223333444443 4599999
Q ss_pred eccccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
|+. +++|+.|+..++..+.++|||||.+++++-
T Consensus 164 cse-vleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 164 CSE-VLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eHH-HHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 999 799999999999999999999999999884
No 40
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.22 E-value=3.7e-11 Score=128.20 Aligned_cols=190 Identities=22% Similarity=0.437 Sum_probs=130.4
Q ss_pred CCCcccCCCC-----CCCCCCCCCcchhhhhhccCCCCcccccccccccceecCCeeecCC-CCCCCCccHHHHHHHHHH
Q 009946 128 RYNCLVPPPK-----GYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPG-GGTHFHDGADKYILALAR 201 (522)
Q Consensus 128 ~~~Clvp~P~-----~Y~~P~~WP~srd~~W~~n~~~~~L~~~k~~q~W~~~~g~~~~Fpg-g~~~F~~ga~~y~~~l~~ 201 (522)
...|+.|.|. +-..+.+||++...+ ...|.... +.| ....|......+...+..
T Consensus 293 l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~------P~rl~~~~--------------~~g~~~e~F~~Dt~~Wk~~V~~ 352 (506)
T PF03141_consen 293 LEACITPLPEVSSEIAGGWLPKWPERLNAV------PPRLSSGS--------------IPGISPEEFKEDTKHWKKRVSH 352 (506)
T ss_pred hhhhcCcCCcccccccccCCCCChhhhccC------chhhhcCC--------------cCCCCHHHHHHHHHHHHHHHHH
Confidence 3579999997 467889999987552 11111100 111 123344444445444444
Q ss_pred HhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCce
Q 009946 202 MLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFE 281 (522)
Q Consensus 202 lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFD 281 (522)
...+.... ...+..+.|+|+.+|.|+|++.|.+..|+.|.+.+. .....+....+||+-..++.. .+.++.-+++||
T Consensus 353 Y~~l~~~~-i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYD 429 (506)
T PF03141_consen 353 YKKLLGLA-IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYD 429 (506)
T ss_pred HHHhhccc-ccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchh
Confidence 43322211 124668999999999999999999999999999997 566777888899875544432 455665559999
Q ss_pred EEEeccccccchh---hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 282 LAHCSRCRIDWLQ---RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 282 lVv~s~~~l~~~~---d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
+||+.. ++.... +...+|.|++|+|||||+++|-+ ......+++.+++++.|+......
T Consensus 430 LlHA~~-lfs~~~~rC~~~~illEmDRILRP~G~~iiRD---------~~~vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 430 LLHADG-LFSLYKDRCEMEDILLEMDRILRPGGWVIIRD---------TVDVLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred heehhh-hhhhhcccccHHHHHHHhHhhcCCCceEEEec---------cHHHHHHHHHHHHhCcceEEEEec
Confidence 999876 343332 34679999999999999999944 334577899999999998875544
No 41
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.21 E-value=1.7e-11 Score=118.69 Aligned_cols=135 Identities=26% Similarity=0.328 Sum_probs=101.7
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCC-C-CCCCCceEEEecccccc
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-P-YPSRSFELAHCSRCRID 291 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~l-p-f~d~sFDlVv~s~~~l~ 291 (522)
+.-+++||+|||||.++..|... +-++++.|+|++|+..|.+++.--.+.+.+...+ + ..++.||+|++.. ++.
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl~ 199 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VLP 199 (287)
T ss_pred CccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HHH
Confidence 34689999999999999999875 4466777999999999999987555555554322 2 3457899999777 799
Q ss_pred chhhhHHHHHHHHHhCCCCeEEEEEeCC---CCC-CChhH---HHHHHHHHHHHHhcCcEEEEEecce
Q 009946 292 WLQRDGILLLELDRLLRPGGYFVYSSPE---AYA-HDPEN---RRIWNAMYDLLKSMCWKIVSKKDQT 352 (522)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvis~P~---~~~-~~~e~---~~~~~~l~~l~~~~g~~~v~~~~~~ 352 (522)
|+-+.+.++.-+...|+|||.|.|+.-. ... ..... .+.-.-+.++++..||+++..++.+
T Consensus 200 YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 200 YLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred hhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 9999999999999999999999998732 111 00011 1112357888999999999877654
No 42
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.21 E-value=4.3e-10 Score=110.02 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=81.6
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC------CCeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG------IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg------~~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
..+|||+|||+|.++..++........+.+.|+++.+++.++++. .++.+...|...+++++++||+|+++. .
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~-~ 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF-G 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec-c
Confidence 368999999999999988765211245666677778877776652 356788888888888778999999887 5
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+++..+...+|.++.++|+|||.+++.+.
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 78888899999999999999999988653
No 43
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.20 E-value=5.6e-11 Score=120.05 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=80.4
Q ss_pred CCCeEEEECCCCch----HHHHHhhCC----CcccccCcccccHHHHHHHHHcC--------------------------
Q 009946 215 NIRNVLDVGCGVAS----FGAYLLSHD----IIAMSLAPNDVHENQIQFALERG-------------------------- 260 (522)
Q Consensus 215 ~~~~VLDIGCGtG~----~a~~La~~~----v~gvdis~~Dis~a~i~~A~~rg-------------------------- 260 (522)
...+|+|+|||+|. ++..|++.. ...+.+.+.|+++.+++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34789999999994 455555431 12467888899999999888641
Q ss_pred ------CCeEEEEeCCCCCCCCCCCceEEEeccccccchhhh--HHHHHHHHHhCCCCeEEEEEeCC
Q 009946 261 ------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 261 ------~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
..+.|.+.|+...++++++||+|+|.+ +++|.++. ..++.+++++|+|||++++....
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-VLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEech-hHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 146788888888887788999999988 56776543 57999999999999999996543
No 44
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.19 E-value=4.5e-12 Score=108.05 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=49.9
Q ss_pred EEECCCCchHHHHHhhC----CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC-C-CCCCceEEEeccccccch
Q 009946 220 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 220 LDIGCGtG~~a~~La~~----~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp-f-~d~sFDlVv~s~~~l~~~ 293 (522)
||||||+|.++..++++ .++++|+++.++..+..+.................+.. . ..++||+|+++. ++||.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999999888764 44555555544432222222222223333333333322 1 225899999887 69999
Q ss_pred hhhHHHHHHHHHhCCCCeEE
Q 009946 294 QRDGILLLELDRLLRPGGYF 313 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~l 313 (522)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=2.5e-10 Score=115.28 Aligned_cols=124 Identities=16% Similarity=0.313 Sum_probs=91.1
Q ss_pred ecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc
Q 009946 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER 259 (522)
Q Consensus 180 ~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r 259 (522)
.|+............-.+.+.+.+.+. ++.+|||||||.|.++.+++++. ++.+.+.++|++|...++++
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L~--------~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r 114 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGLK--------PGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKR 114 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCCC--------CCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHH
Confidence 455444444444444555666666543 35889999999999999999872 55666667788887777664
Q ss_pred ----CCC--eEEEEeCCCCCCCCCCCceEEEeccccccchhh--hHHHHHHHHHhCCCCeEEEEEe
Q 009946 260 ----GIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 260 ----g~~--~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvis~ 317 (522)
|.+ +.+...|..++. +.||-|++.. +++|+.. ...+++.++++|+|||.+++.+
T Consensus 115 ~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 115 IAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred HHHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 544 667666666654 4499999887 6888865 6889999999999999999866
No 46
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.17 E-value=7.7e-11 Score=113.42 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=92.1
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
...++|.|+|||+|..+..|+++ .....+++.|.|.+|+..|+++.+++.|..+|+..+.- +..+|+++++. +++|.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p-~~~~dllfaNA-vlqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP-EQPTDLLFANA-VLQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC-CCccchhhhhh-hhhhc
Confidence 34688999999999999999986 33456778899999999999999999999999988863 46799999655 89999
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEEeCCCC
Q 009946 294 QRDGILLLELDRLLRPGGYFVYSSPEAY 321 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvis~P~~~ 321 (522)
+|-..+|..+...|.|||.+.+..|+..
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 9999999999999999999999999764
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.17 E-value=7.6e-11 Score=114.32 Aligned_cols=121 Identities=20% Similarity=0.225 Sum_probs=87.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C-CCeEEEEeCC-CCCC--CCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGT-KRLP--YPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g-~~~~~~~~d~-~~lp--f~d~sFDlVv~s~ 287 (522)
..+|||||||+|.++..|++.. ....+.+.|+++.+++.|+++ + .++.+...|+ +.++ +++++||+|++..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4679999999999999987641 223455667777777766543 3 3578888887 7766 7778999999765
Q ss_pred ccccchh--------hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q 009946 288 CRIDWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 288 ~~l~~~~--------d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
. .+|.. ....+++++.++|||||.|+++++.. .....+...+++.||+..
T Consensus 120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------HHHHHHHHHHHhCccccc
Confidence 3 33322 13679999999999999999987542 224467777788887554
No 48
>PRK06202 hypothetical protein; Provisional
Probab=99.15 E-value=4.9e-10 Score=110.51 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~rg--~~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
+..+|||||||+|.++..|++. ......+.+.|+++.+++.|+++. .++.+...+...+++++++||+|+|+. +
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~-~ 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH-F 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC-e
Confidence 4478999999999998888642 122346778899999999988763 345666666777777778999999998 5
Q ss_pred ccchhhh--HHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~--~~~L~ei~RvLkPGG~lvis~ 317 (522)
+||.++. ..+|+++.|+++ |.+++.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 8888775 469999999998 4555443
No 49
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=8.8e-11 Score=112.25 Aligned_cols=99 Identities=24% Similarity=0.352 Sum_probs=77.4
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH-----cCCCeE-EEEeCCCCCC-CCCCCceEEEecccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE-----RGIPST-LGVLGTKRLP-YPSRSFELAHCSRCR 289 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~-----rg~~~~-~~~~d~~~lp-f~d~sFDlVv~s~~~ 289 (522)
..||+||||||..-.++... .+.+++..|.++.|.+++.+ +..++. |++++.+++| ++++++|.|+|.. +
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl-v 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL-V 154 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE-E
Confidence 45899999999776666532 13345555667777666543 345565 8889999999 8999999999998 4
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+.-.+++.+.|+|+.|+|||||.+++...
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 77788999999999999999999999763
No 50
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.15 E-value=3e-10 Score=110.48 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=77.8
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh-
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~- 294 (522)
..+|||||||+|.++..|++. ..+.++.+.|+++.+++.|+++..++.+..+++.. |+++++||+|+++. +++|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~-vL~hl~p 120 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKG-VLIHINP 120 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECC-hhhhCCH
Confidence 467999999999999999764 12457888899999999998876667778888777 88889999999887 566663
Q ss_pred -hhHHHHHHHHHhCCCCeEEEEEe
Q 009946 295 -RDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 295 -d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+...+++++.|++ ++++++..
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 3467999999998 46777765
No 51
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.13 E-value=3.9e-10 Score=107.70 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHH----HcCC-CeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL----ERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~----~rg~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
..+|||||||+|.++..++... ....+.+.|.++.+++.++ +.+. ++.+..+|+.+++. +++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh--h
Confidence 4689999999999888876431 1123444455555554443 3344 57888888887753 57899998653 3
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
+ +...++..+.++|+|||.+++...... ......+.+.+...|++.++...
T Consensus 119 ~---~~~~~~~~~~~~LkpgG~lvi~~~~~~------~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 A---SLNVLLELTLNLLKVGGYFLAYKGKKY------LDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred h---CHHHHHHHHHHhcCCCCEEEEEcCCCc------HHHHHHHHHhhhhcCceEeeccc
Confidence 3 345688899999999999998753321 12233343444557887776544
No 52
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.13 E-value=8.3e-10 Score=108.64 Aligned_cols=131 Identities=16% Similarity=0.275 Sum_probs=95.1
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCC-CCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP-YPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lp-f~d~sFDlVv~s~~~l 290 (522)
..+|||||||+|.++..+... +..+.+.|+++.++..++++ +..+.+...+...++ ..+++||+|+++. .+
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~-~l 124 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCME-ML 124 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhh-Hh
Confidence 467999999999999888875 34566667777777776654 445666666666554 3457899999988 58
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChh------------------HHH---HHHHHHHHHHhcCcEEEEEe
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE------------------NRR---IWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e------------------~~~---~~~~l~~l~~~~g~~~v~~~ 349 (522)
++..+...+|.++.++|+|||.++++.+........ ... .-.++.+++++.||+++...
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 888889999999999999999999987642110000 000 11368889999999998765
Q ss_pred c
Q 009946 350 D 350 (522)
Q Consensus 350 ~ 350 (522)
.
T Consensus 205 ~ 205 (233)
T PRK05134 205 G 205 (233)
T ss_pred e
Confidence 3
No 53
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.12 E-value=5.4e-10 Score=109.18 Aligned_cols=130 Identities=20% Similarity=0.256 Sum_probs=90.9
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
+..+|||+|||+|.++..++.. +..+.+.|+++.++..|+++ + .++.+.+.|+..++ ++||+|++...
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 3578999999999999999875 34566778888888887765 2 25778888877765 68999998874
Q ss_pred cccchh--hhHHHHHHHHHhCCCCeEEEEEeCCCCC-----------CCh----hHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 289 RIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA-----------HDP----ENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 289 ~l~~~~--d~~~~L~ei~RvLkPGG~lvis~P~~~~-----------~~~----e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
++|.+ +...++.++.+++++++.+.+....... ... .....-+++.++++.+||+++..+..
T Consensus 129 -l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 129 -LIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred -HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 55443 4567899999999988777654321100 000 00011247889999999999876543
No 54
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.12 E-value=3.5e-10 Score=123.09 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=91.8
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc---CCCeEEEEeCCC--CCCCCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTK--RLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---g~~~~~~~~d~~--~lpf~d~sFDlVv~s~~~l 290 (522)
..+|||||||+|.++..|++. +..+.+.|+++.+++.+++. ..++.+...|+. .+++++++||+|+|+. .+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~-~l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW-LL 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhh-hH
Confidence 358999999999999999875 23455667777777766543 235677778864 5678888999999888 57
Q ss_pred cchhh--hHHHHHHHHHhCCCCeEEEEEeCCCCCC-------ChhHHHHHHHHHHHHHhcCcEEEE
Q 009946 291 DWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVS 347 (522)
Q Consensus 291 ~~~~d--~~~~L~ei~RvLkPGG~lvis~P~~~~~-------~~e~~~~~~~l~~l~~~~g~~~v~ 347 (522)
+|..+ ...++.++.|+|||||++++.+...... ++........+.+++.+.||....
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence 77765 3689999999999999999976432111 111112234566778888876664
No 55
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.12 E-value=1e-09 Score=113.52 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=82.9
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC----------CCeEEEEeCCCCCCCCCCCceEEEe
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG----------IPSTLGVLGTKRLPYPSRSFELAHC 285 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg----------~~~~~~~~d~~~lpf~d~sFDlVv~ 285 (522)
..+|||||||+|.++..|+++ +.++.+.|+++.+++.|+++. ..+.+...|...+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 468999999999999999986 456777788888888877652 2346666665544 478999999
Q ss_pred ccccccchhhh--HHHHHHHHHhCCCCeEEEEEeCCCCCCChh-H---------------HHHHHHHHHHHHhcCcEEEE
Q 009946 286 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPE-N---------------RRIWNAMYDLLKSMCWKIVS 347 (522)
Q Consensus 286 s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~~~~~~e-~---------------~~~~~~l~~l~~~~g~~~v~ 347 (522)
... ++|.++. ..++..+.+ +.+||.++...|..+.+... . ...-+++++++++.||++..
T Consensus 219 ~~v-L~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 219 LDV-LIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred cCE-EEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence 885 4445443 346666665 45666655444432211100 0 00125788999999999875
Q ss_pred Ee
Q 009946 348 KK 349 (522)
Q Consensus 348 ~~ 349 (522)
.+
T Consensus 297 ~~ 298 (315)
T PLN02585 297 RE 298 (315)
T ss_pred EE
Confidence 44
No 56
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.11 E-value=2.7e-10 Score=109.92 Aligned_cols=120 Identities=20% Similarity=0.284 Sum_probs=93.0
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeC-CCCCCCCCCCceEEEeccccccch
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d-~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
...-|||||||+|..+..|.+. +.-..+.|+|+.|+..|.++.....+..+| -+-+||+.++||.+++.. +++|.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQWL 125 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQWL 125 (270)
T ss_pred CCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEee-eeeee
Confidence 5678999999999999998875 344556688888888888776665666666 478999999999999655 57775
Q ss_pred hh-------h----HHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q 009946 294 QR-------D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (522)
Q Consensus 294 ~d-------~----~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~ 344 (522)
-+ + ..++..++.+|++|+..++.. .+++....+.+...+.++||.
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf------Ypen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF------YPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEe------cccchHHHHHHHHHHHhhccC
Confidence 32 1 347888999999999999843 455556677788888889984
No 57
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.11 E-value=4e-10 Score=107.89 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=75.5
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---CCeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
...+++||+|||.|.++..|+.+ +-.+...|+++.+++.|++|- .++.+.+.++... .|+++||+|+++. ++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE-Vl 116 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE-VL 116 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES--G
T ss_pred cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh-Hh
Confidence 44578999999999999999987 445666688888999998872 4688888887664 4678999999998 68
Q ss_pred cchhh---hHHHHHHHHHhCCCCeEEEEEeC
Q 009946 291 DWLQR---DGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 291 ~~~~d---~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+|..+ ...++..+...|+|||.+++...
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 88854 35689999999999999999763
No 58
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.10 E-value=8.1e-10 Score=107.75 Aligned_cols=132 Identities=19% Similarity=0.292 Sum_probs=96.2
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCC-CCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYP-SRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~-d~sFDlVv~s~~~ 289 (522)
..+|||+|||+|.++..+++. +.++.+.|.++.++..++++ +. ++.+...+..+++.+ .++||+|++.. .
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-~ 121 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-V 121 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehh-H
Confidence 468999999999999988765 23466667777777766653 34 467777777666644 37899999887 5
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCC------------------hhHHH---HHHHHHHHHHhcCcEEEEE
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD------------------PENRR---IWNAMYDLLKSMCWKIVSK 348 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~------------------~e~~~---~~~~l~~l~~~~g~~~v~~ 348 (522)
+++..++..+|.++.++|+|||.++++.+...... ..... ...++.+++++.||++++.
T Consensus 122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 88899999999999999999999998875321000 00000 1236888999999999976
Q ss_pred ecc
Q 009946 349 KDQ 351 (522)
Q Consensus 349 ~~~ 351 (522)
...
T Consensus 202 ~~~ 204 (224)
T TIGR01983 202 KGL 204 (224)
T ss_pred eeE
Confidence 643
No 59
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.09 E-value=4.7e-10 Score=117.35 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=72.1
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH----cCCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~----rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
.+|||+|||+|.++..++.+. ....+...|+++.+++.|++ .+....+...|... ..++.||+|+|+. .+|+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNP-PFH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNP-PFHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECC-CccC
Confidence 479999999999999988752 12345555666666666654 34555666666433 2257899999887 3554
Q ss_pred h-----hhhHHHHHHHHHhCCCCeEEEEEeCCCC
Q 009946 293 L-----QRDGILLLELDRLLRPGGYFVYSSPEAY 321 (522)
Q Consensus 293 ~-----~d~~~~L~ei~RvLkPGG~lvis~P~~~ 321 (522)
. .....++.++.+.|||||.++++.....
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 2 2347899999999999999999886544
No 60
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.09 E-value=6e-10 Score=118.27 Aligned_cols=98 Identities=22% Similarity=0.394 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc--CCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r--g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
+..+|||||||+|.++..++++. +..+.+.|+++.+++.|+++ +..+.+...|...+ +++||.|++.. .++|
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~eh 240 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG-MFEH 240 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC-chhh
Confidence 34689999999999999998752 45677778899999998876 34466666666555 36899999877 5777
Q ss_pred hh--hhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 293 LQ--RDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 293 ~~--d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+. +...++.++.++|||||++++.+.
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 63 447899999999999999999763
No 61
>PRK06922 hypothetical protein; Provisional
Probab=99.09 E-value=3.6e-10 Score=125.07 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=79.8
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCC--CCCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP--YPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lp--f~d~sFDlVv~s~~~ 289 (522)
..+|||||||+|.++..++.. ..+.++.+.|+++.+++.|+++ +.++.+..+|..++| +++++||+|+++..
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v- 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI- 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH-
Confidence 468999999999998888764 2345667778888888887764 345677778888887 78899999998874
Q ss_pred ccch-------------hhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 290 IDWL-------------QRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 290 l~~~-------------~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+|+. .+...+|+++.|+|||||.+++.+.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5543 2457899999999999999999874
No 62
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.09 E-value=4.5e-10 Score=111.59 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=108.4
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc------CCCeEEEEeCCCCCC--CCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLP--YPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r------g~~~~~~~~d~~~lp--f~d~sFDlVv~s~ 287 (522)
..+|||+|||+|.++..++++.-. ..+.++++.+.+.+.|++. ..++.+...|+..+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 578999999999999999987211 4566667777777777654 235788888877664 3345799999952
Q ss_pred c-----------------cccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 288 C-----------------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 288 ~-----------------~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
- .++-..+.+.+++...++|||||++.++.|+.. ..++..++++.+|...+...
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er---------l~ei~~~l~~~~~~~k~i~~ 194 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER---------LAEIIELLKSYNLEPKRIQF 194 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH---------HHHHHHHHHhcCCCceEEEE
Confidence 1 111112346799999999999999999887642 55788899999998887766
Q ss_pred ceEEEeccCCcccccccCCCC-----CCCCCCCCCCCC
Q 009946 351 QTVIWAKPISNSCYLKRVPGS-----RPPLCSSDDDPD 383 (522)
Q Consensus 351 ~~~iw~Kp~~~~c~~~r~~~~-----~p~lC~~~~~~d 383 (522)
....-.|+.++-....++.++ .|||-..+++..
T Consensus 195 V~p~~~k~A~~vLv~~~k~~~~~l~~~ppLii~~e~g~ 232 (248)
T COG4123 195 VYPKIGKAANRVLVEAIKGGKSGLKVLPPLIIHDEDGE 232 (248)
T ss_pred ecCCCCCcceEEEEEEecCCCCCceecCCEEEECCCCC
Confidence 554445555555555554443 455555444443
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.07 E-value=7.7e-10 Score=107.98 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=66.1
Q ss_pred CCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCceE
Q 009946 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp--------f~d~sFDl 282 (522)
..+|||||||+|.++..++++ .|+++|+++ + ....++.+.++|+.+.+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~------~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP------M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc------c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 468999999999999988765 355555543 1 11235778888877753 56788999
Q ss_pred EEeccccccchhhh-----------HHHHHHHHHhCCCCeEEEEEeC
Q 009946 283 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 283 Vv~s~~~l~~~~d~-----------~~~L~ei~RvLkPGG~lvis~P 318 (522)
|+|.. ..++..++ ..+|.++.++|||||.|++...
T Consensus 121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99865 34443221 4589999999999999999763
No 64
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.07 E-value=1.6e-09 Score=104.12 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=89.0
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCC-C-CCCCCCceEEEeccccccchh
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~-l-pf~d~sFDlVv~s~~~l~~~~ 294 (522)
.+|||||||+|.++..+++.. +.++.+.|+++.+++.+++++ +.+...++.. + ++++++||+|+|+. +++|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhHcCc
Confidence 579999999999999887642 234456688888888887765 4556666654 4 47778999999988 689999
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEeCCCC--------------C---------CC--hhHHHHHHHHHHHHHhcCcEEEEEe
Q 009946 295 RDGILLLELDRLLRPGGYFVYSSPEAY--------------A---------HD--PENRRIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~P~~~--------------~---------~~--~e~~~~~~~l~~l~~~~g~~~v~~~ 349 (522)
++..+|+++.|++++ .+++.|+.. . .+ .......+++.+++++.||+++...
T Consensus 90 d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 90 NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 999999999988764 344443310 0 00 0111234578899999999988644
Q ss_pred c
Q 009946 350 D 350 (522)
Q Consensus 350 ~ 350 (522)
.
T Consensus 167 ~ 167 (194)
T TIGR02081 167 A 167 (194)
T ss_pred E
Confidence 3
No 65
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.07 E-value=3.5e-10 Score=108.77 Aligned_cols=97 Identities=22% Similarity=0.447 Sum_probs=71.0
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHH----HHHHHcCCCeEEEEeCCCCCCCCCCCceEEEecccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI----QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i----~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~ 291 (522)
+.++||+|||.|..+.+|+++ |.++++.|.++..+ +.|.+.+.++.....|+....++ +.||+|++.. +++
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~ 105 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFM 105 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGG
T ss_pred CCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-Eec
Confidence 468999999999999999987 44444445554444 45566788899999998888776 6799999765 566
Q ss_pred chhhh--HHHHHHHHHhCCCCeEEEEEe
Q 009946 292 WLQRD--GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 292 ~~~d~--~~~L~ei~RvLkPGG~lvis~ 317 (522)
|.... ..++..+...++|||++++.+
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 66443 679999999999999998854
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.07 E-value=2.1e-09 Score=101.91 Aligned_cols=120 Identities=14% Similarity=0.140 Sum_probs=84.7
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
.+|||+|||+|.++..++... ..+.+.|+++.+++.++++ +.++.+...|....+ .++||+|+++.. +++
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCC-CCC
Confidence 579999999999999998762 1455667777777666553 456677777765543 358999998753 322
Q ss_pred hhh---------------------hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 293 LQR---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 293 ~~d---------------------~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
..+ ...++.++.|+|+|||.+++..+.... -.++..++++.||.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~--------~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG--------EPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC--------hHHHHHHHHhCCCeEEEEEE
Confidence 211 246899999999999999998754311 24567788899998775443
No 67
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.07 E-value=8.7e-10 Score=109.54 Aligned_cols=181 Identities=15% Similarity=0.237 Sum_probs=120.3
Q ss_pred cceecCCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccH
Q 009946 171 WMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHE 250 (522)
Q Consensus 171 W~~~~g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~ 250 (522)
|+....+...+-|.|.+|--..+++.+.+.. ............++||||+|.|..+..|+.. --++...+.|.
T Consensus 54 ~f~S~T~iNG~LgRG~MFvfS~~Q~~~LL~~----~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~ 126 (265)
T PF05219_consen 54 WFMSKTDINGILGRGSMFVFSEEQFRKLLRI----SGFSWNPDWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEASP 126 (265)
T ss_pred HHHhHHhHhhhhcCCcEEEecHHHHHHHhhh----hccCCCCcccCCceEEecCCCcHHHHHHHhh---cceEEeecCCH
Confidence 4444455555667777777777766654442 2111122235678999999999999999874 12345557888
Q ss_pred HHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEe--CC-------C-
Q 009946 251 NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS--PE-------A- 320 (522)
Q Consensus 251 a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~--P~-------~- 320 (522)
.|+..-+++|..+. +..++.-.+.+||+|.|.+ ++.-..+|..+|+++++.|+|+|.++++. |. .
T Consensus 127 ~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g 201 (265)
T PF05219_consen 127 PMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGG 201 (265)
T ss_pred HHHHHHHhCCCeEE----ehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCC
Confidence 99888888887532 3333333346799999999 68888999999999999999999999865 31 0
Q ss_pred -CCCChhHH----HHHH----HHHHHHHhcCcEEEEEecceEEEeccCCcccccccCCCCCCCCCCCCCCCCc
Q 009946 321 -YAHDPENR----RIWN----AMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 384 (522)
Q Consensus 321 -~~~~~e~~----~~~~----~l~~l~~~~g~~~v~~~~~~~iw~Kp~~~~c~~~r~~~~~p~lC~~~~~~d~ 384 (522)
..+..+.. ..|+ .+.++++.+||++.+. .+.|.||+.+...++
T Consensus 202 ~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~---------------------tr~PYLcEGD~~~~~ 253 (265)
T PF05219_consen 202 KSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERW---------------------TRLPYLCEGDLYQSY 253 (265)
T ss_pred CCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEE---------------------eccCccccCcccCce
Confidence 11111111 1233 4557789999998853 245889987554443
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=6.2e-10 Score=107.16 Aligned_cols=121 Identities=17% Similarity=0.270 Sum_probs=81.6
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C-CCeEEEEeCCCCCC---CCCCCceEEEeccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRLP---YPSRSFELAHCSRC 288 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g-~~~~~~~~d~~~lp---f~d~sFDlVv~s~~ 288 (522)
.+|||||||+|.++..++.+. ....+.+.|+++.+++.|+++ + .++.+..+|+.+++ +++++||.|++...
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 579999999999999998652 123455556666666655433 3 36788888876553 55678999997653
Q ss_pred cccchhhh--------HHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcC-cEEEE
Q 009946 289 RIDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 347 (522)
Q Consensus 289 ~l~~~~d~--------~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-~~~v~ 347 (522)
.+|.... ..++.++.|+|||||.|++.+... .....+.+.+...+ |+...
T Consensus 97 -dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--------~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 -DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--------PLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred -CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--------HHHHHHHHHHHhCCCeEecc
Confidence 4443221 569999999999999999976432 12444555555554 66553
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.05 E-value=4.3e-10 Score=106.01 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCC-eEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP-STLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~-~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
..+|||+|||+|.++..++.+. ....+...|+++.+++.+++. +.. +.+...|.... .++++||+|+|+.- +
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP-~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPP-F 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccc-h
Confidence 4679999999999999998752 122355556667776666543 444 77777775432 23688999998753 3
Q ss_pred cchhh-----hHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 291 DWLQR-----DGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 291 ~~~~d-----~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
+...+ ...++.+..+.|+|||.+++....
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 32222 367899999999999999877644
No 70
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.02 E-value=7e-09 Score=98.98 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=81.1
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C-CCeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g-~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
..+|||||||+|.++..++.+. ....+.+.|+++.+++.++++ + .++.+...+.. .+++ ++||+|++... .
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-G 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-c
Confidence 4689999999999999887642 123445556666666665542 3 24666666653 2333 57999997653 3
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~ 349 (522)
+ ....++.++.++|+|||++++..... ....++.+++++.||+.++..
T Consensus 108 ~---~~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 108 G---NLTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred c---CHHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCcceEE
Confidence 3 24568999999999999999865321 224567788999999766543
No 71
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.02 E-value=1.5e-09 Score=110.21 Aligned_cols=133 Identities=23% Similarity=0.234 Sum_probs=92.5
Q ss_pred CCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHc-CCCe--EEEEeCCCCCCCCCCCceEEEeccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPS--TLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~r-g~~~--~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
.+++|||||||.|.++..|+.+ .|+|+|.+.. .-.+-+++++. +... ...-..++.+|. .++||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l--f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL--FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH--HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 3578999999999999998865 4566655442 23333344333 3332 233346888887 68999999888
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeC------------C-CCCCCh--hHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP------------E-AYAHDP--ENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P------------~-~~~~~~--e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
++.|..++-..|.++...|+|||.+++-+- . .|.... -....-..+...++++||+.++..+.
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 799999999999999999999999997542 1 111110 01112347888899999998876664
No 72
>PRK04266 fibrillarin; Provisional
Probab=99.01 E-value=6e-09 Score=103.01 Aligned_cols=130 Identities=12% Similarity=0.079 Sum_probs=83.5
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHH----HHHcCCCeEEEEeCCCC----CCCCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQF----ALERGIPSTLGVLGTKR----LPYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~----A~~rg~~~~~~~~d~~~----lpf~d~sFDlVv~s~ 287 (522)
..+|||+|||+|.++..|++..- .-.+.+.|+++.+++. |+++ .++.+..+|... .+++ .+||+|++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 46899999999999999987521 1245555666655553 3332 456777777654 1233 5699998543
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCC-CCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
. . ......++.++.|+|||||+++++.+... ....+....+++..+.++++||+.+...+.
T Consensus 150 ~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 150 A-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred C-C--hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 1 1 11224578999999999999999654210 011111233455668899999999977664
No 73
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.01 E-value=1.5e-09 Score=114.66 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=68.9
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC----CeEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI----PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~----~~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
.+|||+|||+|.++..++++. ....+...|.++.+++.|++. +. ++.+...|.... ++..+||+|+|+..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 579999999999999998752 223455556677777766543 22 356666654322 33468999999753
Q ss_pred cccch---h--hhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 289 RIDWL---Q--RDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 289 ~l~~~---~--d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
+|.. . ....++.++.++|+|||.|+++...
T Consensus 308 -fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 308 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred -cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 3322 1 1257899999999999999998643
No 74
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.00 E-value=2.2e-09 Score=105.12 Aligned_cols=98 Identities=13% Similarity=-0.008 Sum_probs=71.5
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH-c----------------CCCeEEEEeCCCCCCCC-C
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE-R----------------GIPSTLGVLGTKRLPYP-S 277 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~-r----------------g~~~~~~~~d~~~lpf~-d 277 (522)
..+|||+|||.|..+.+|+++ |.++++.|+|+.+++.+.+ . +.++.+.++|+.+++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 368999999999999999987 5556666677776665422 2 33577788888777642 3
Q ss_pred CCceEEEeccccccchh-hh-HHHHHHHHHhCCCCeEEEEEe
Q 009946 278 RSFELAHCSRCRIDWLQ-RD-GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 278 ~sFDlVv~s~~~l~~~~-d~-~~~L~ei~RvLkPGG~lvis~ 317 (522)
+.||.|+-..+ +++++ +. ..++..+.++|||||++++.+
T Consensus 112 ~~fD~i~D~~~-~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 112 GPVDAVYDRAA-LIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCcCEEEechh-hccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 57999997664 44443 32 569999999999999866543
No 75
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.4e-09 Score=110.43 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=97.5
Q ss_pred CCeeecCCCCCCCCccHHH-HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHH
Q 009946 176 GEKINFPGGGTHFHDGADK-YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQ 254 (522)
Q Consensus 176 g~~~~Fpgg~~~F~~ga~~-y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~ 254 (522)
+..+.|-.....|....-. =.+.+.+.++... . .+|||+|||.|.++..|++... ...++-.|++..+++
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~-------~-~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~ 196 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDL-------G-GKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVE 196 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccC-------C-CcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHH
Confidence 4455665556666654432 2335555555331 2 3799999999999999997632 334555566666666
Q ss_pred HHHHc----CCCe-EEEEeCCCCCCCCCCCceEEEeccccccchhhh-----HHHHHHHHHhCCCCeEEEEEeCCCCCCC
Q 009946 255 FALER----GIPS-TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAYAHD 324 (522)
Q Consensus 255 ~A~~r----g~~~-~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~-----~~~L~ei~RvLkPGG~lvis~P~~~~~~ 324 (522)
.|++. ++.. .+...+ .-.+.++ +||+|+|+-- +|--.+. .+++.+..+.|++||.|+|+......+.
T Consensus 197 ~ar~Nl~~N~~~~~~v~~s~-~~~~v~~-kfd~IisNPP-fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~ 273 (300)
T COG2813 197 SARKNLAANGVENTEVWASN-LYEPVEG-KFDLIISNPP-FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYE 273 (300)
T ss_pred HHHHhHHHcCCCccEEEEec-ccccccc-cccEEEeCCC-ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChH
Confidence 66554 3333 333333 3333443 8999998763 4322211 3799999999999999999987544333
Q ss_pred hhHHHHHHHHHHHHHhcCcEEEE
Q 009946 325 PENRRIWNAMYDLLKSMCWKIVS 347 (522)
Q Consensus 325 ~e~~~~~~~l~~l~~~~g~~~v~ 347 (522)
....+.|...+.+++.-||++.+
T Consensus 274 ~~L~~~Fg~v~~la~~~gf~Vl~ 296 (300)
T COG2813 274 KKLKELFGNVEVLAKNGGFKVLR 296 (300)
T ss_pred HHHHHhcCCEEEEEeCCCEEEEE
Confidence 33334444444555555665553
No 76
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.98 E-value=5.1e-09 Score=108.93 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=84.8
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEeccc--
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~-- 288 (522)
..+|||+|||+|.++..++.. +..+.+.|+++.+++.++++ +. ++.+...|+.++|+++++||+|++..-
T Consensus 183 g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 468999999999988766543 33444556666665554433 33 357888999999988889999998521
Q ss_pred ---cc--cch-hhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 289 ---RI--DWL-QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 289 ---~l--~~~-~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
.. +.. .-...++.++.|+|||||++++..|... ++..+++.+|| ++.+..+
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-chheeee
Confidence 01 111 1236799999999999999999887642 34567899999 7765544
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.97 E-value=1.2e-08 Score=104.43 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=86.8
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----
Q 009946 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---- 259 (522)
Q Consensus 184 g~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---- 259 (522)
.+..|..+.........+++.... ....+|||+|||+|.++..++... +..+.+.|+++.+++.|+++
T Consensus 134 pg~aFgtG~h~tt~l~l~~l~~~~------~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 134 PGLAFGTGTHPTTSLCLEWLEDLD------LKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred CCCcccCCCCHHHHHHHHHHHhhc------CCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHc
Confidence 344555554444444444443211 123789999999999988877542 12445556666666666554
Q ss_pred CCC--eEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHH
Q 009946 260 GIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 337 (522)
Q Consensus 260 g~~--~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l 337 (522)
+.. +.+...+ ..+..+++||+|+++. ..+ ....++.++.++|||||+++++.... ....++.+.
T Consensus 206 ~~~~~~~~~~~~--~~~~~~~~fDlVvan~-~~~---~l~~ll~~~~~~LkpgG~li~sgi~~--------~~~~~v~~~ 271 (288)
T TIGR00406 206 QVSDRLQVKLIY--LEQPIEGKADVIVANI-LAE---VIKELYPQFSRLVKPGGWLILSGILE--------TQAQSVCDA 271 (288)
T ss_pred CCCcceEEEecc--cccccCCCceEEEEec-CHH---HHHHHHHHHHHHcCCCcEEEEEeCcH--------hHHHHHHHH
Confidence 322 2333332 2334457899999865 222 33578999999999999999987432 123456666
Q ss_pred HHhcCcEEEEEe
Q 009946 338 LKSMCWKIVSKK 349 (522)
Q Consensus 338 ~~~~g~~~v~~~ 349 (522)
+++. |+++...
T Consensus 272 ~~~~-f~~~~~~ 282 (288)
T TIGR00406 272 YEQG-FTVVEIR 282 (288)
T ss_pred HHcc-CceeeEe
Confidence 6665 8776543
No 78
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.97 E-value=1.5e-08 Score=101.52 Aligned_cols=116 Identities=19% Similarity=0.245 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
...+|||+|||+|.++..++.... ..+.+.|+++.+++.|+++ +....+. ++..+.+||+|+++.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~~------~~~~~~~fD~Vvani~-~ 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNVY------LPQGDLKADVIVANIL-A 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEE------EccCCCCcCEEEEcCc-H
Confidence 347899999999998887765421 1255567777777776654 2211111 1122237999997652 2
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
.....++.++.++|||||+++++.... ...+.+...+++.||++.....
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGILE--------EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEECcH--------hhHHHHHHHHHHCCCEEEEEEE
Confidence 223568999999999999999986432 1245677888999999876544
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.97 E-value=9e-09 Score=101.88 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=82.1
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEeccccc-
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI- 290 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~l- 290 (522)
.+|||+|||+|.++..++... ....+.+.|+++.+++.+++. +. ++.+..+|... ++++++||+|+|+...+
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 579999999999999998641 123455556667777666543 33 37778777655 45668899999843111
Q ss_pred ----cch--------------------hhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q 009946 291 ----DWL--------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 291 ----~~~--------------------~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
+.. .....++.++.++|+|||.+++..... .-.++.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~---------~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD---------QGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc---------HHHHHHHHHHhCCCCce
Confidence 000 112357899999999999999965321 12457788889999766
Q ss_pred EE
Q 009946 347 SK 348 (522)
Q Consensus 347 ~~ 348 (522)
..
T Consensus 238 ~~ 239 (251)
T TIGR03534 238 ET 239 (251)
T ss_pred EE
Confidence 54
No 80
>PRK14967 putative methyltransferase; Provisional
Probab=98.97 E-value=1.8e-08 Score=99.01 Aligned_cols=121 Identities=17% Similarity=0.103 Sum_probs=80.5
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCCCCCCCceEEEecccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~ 291 (522)
..+|||+|||+|.++..++... ...+.+.|+++.+++.++++ +.++.+...|.... +++++||+|+++.....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCC
Confidence 3689999999999999888642 12455556666666655543 45667777776543 45678999998632111
Q ss_pred chh--------------------hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q 009946 292 WLQ--------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (522)
Q Consensus 292 ~~~--------------------d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~ 347 (522)
... ....++.++.++|||||.+++..+... ...++.+.+++.||.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--------GVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--------CHHHHHHHHHHCCCCeEE
Confidence 100 134578899999999999998765431 134566667788886443
No 81
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.97 E-value=5.7e-09 Score=91.44 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=68.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C-CCeEEEEeCCCC-CCCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKR-LPYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g-~~~~~~~~d~~~-lpf~d~sFDlVv~s~~~ 289 (522)
..+|||+|||+|.++..++++. ....+.+.|+++.+++.+++. + .++.+...+... ++...++||.|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~- 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS- 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-
Confidence 3589999999999999998752 123455556677777665543 2 246666666544 3333468999997653
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.+ ....+++++.++|+|||+|++..
T Consensus 98 ~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 32 23579999999999999999864
No 82
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.97 E-value=1.9e-09 Score=100.83 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=62.6
Q ss_pred cccccHHHHHHHHHcC--------CCeEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEE
Q 009946 245 PNDVHENQIQFALERG--------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (522)
Q Consensus 245 ~~Dis~a~i~~A~~rg--------~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis 316 (522)
+.|+|+.|++.|+++. .++.+.++|++++|+++++||+|+++. ++++.++...+|+|++|+|||||.+++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 4578888888886541 257899999999999999999999887 6888899999999999999999999987
Q ss_pred eC
Q 009946 317 SP 318 (522)
Q Consensus 317 ~P 318 (522)
+.
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 63
No 83
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.96 E-value=1.2e-08 Score=99.87 Aligned_cols=128 Identities=22% Similarity=0.293 Sum_probs=83.8
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
..+|||||||+|.++..|++. +..+.+.|+++.+++.|+++ +. ++.+...| ++..+++||+|++...
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~- 136 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV- 136 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch-
Confidence 468999999999999999876 23467778888888887765 22 45666666 4445678999998874
Q ss_pred ccchh--hhHHHHHHHHHhCCCCeEEEEEeCCCC-C----------CCh-h----HHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 290 IDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAY-A----------HDP-E----NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 290 l~~~~--d~~~~L~ei~RvLkPGG~lvis~P~~~-~----------~~~-e----~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
++|.+ +...++.++.+++++++.+.+ .+... . ... . ....-.++.++++..||++...+..
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 55543 346788999988765554433 22110 0 000 0 0001236778889999988876553
No 84
>PTZ00146 fibrillarin; Provisional
Probab=98.95 E-value=1.1e-08 Score=104.21 Aligned_cols=132 Identities=12% Similarity=0.090 Sum_probs=83.1
Q ss_pred CCCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCC---CCCCCCCceEEEec
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~---lpf~d~sFDlVv~s 286 (522)
+..+|||+|||+|.++.++++. .|+++|+++.. .+.+++.++++ .++.++..|+.. +.....+||+|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 3468999999999999999875 35555544221 12355666554 567777777643 22234589999976
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCC-CCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
.+ . ..+...++.++.++|||||+|+|...... .........+.+-.+.+++.||+.++..+.
T Consensus 210 va-~--pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 210 VA-Q--PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred CC-C--cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 62 2 22334577799999999999999653211 111111122333237789999998866553
No 85
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.95 E-value=8.8e-09 Score=105.89 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=82.8
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH----cCC--CeEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~----rg~--~~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
+..+|||||||+|.++..++++. ....+...|. +.+++.+++ .+. ++.+..+|..+.+++. +|+|++++.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 34789999999999999998762 1123333344 344555443 333 4678888877666653 699988884
Q ss_pred cccchhhh--HHHHHHHHHhCCCCeEEEEEeCCCCCC-Chh---HHH---------------HHHHHHHHHHhcCcEEEE
Q 009946 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH-DPE---NRR---------------IWNAMYDLLKSMCWKIVS 347 (522)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~~~~-~~e---~~~---------------~~~~l~~l~~~~g~~~v~ 347 (522)
+|+..+. ..+|++++++|+|||++++.+...... ... ... .-+++.++++++||+.++
T Consensus 225 -lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 225 -LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred -hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 5544332 579999999999999999986421110 010 000 014678888888887664
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=98.94 E-value=1.6e-08 Score=95.54 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=82.9
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCC---eEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP---STLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~---~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
..+|||+|||+|.++..++.+ +..+.+.|.++.+++.++++ +.. +.+...|... ++.+++||+|+++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 467999999999999999876 34555666777776666443 322 6667776544 344568999997642
Q ss_pred cccc--------------------hhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q 009946 289 RIDW--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (522)
Q Consensus 289 ~l~~--------------------~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~ 348 (522)
..+. ......+++++.++|||||.+++..+.... .+.+..++++.||++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--------~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--------EDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--------HHHHHHHHHHCCCeeeee
Confidence 1110 111356899999999999999988764321 235778889999987643
No 87
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.94 E-value=2.2e-09 Score=105.11 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=79.9
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCe------EEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPS------TLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~------~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
+.++|+|||+|..+..++++ --++.+.|++++|+++|++..... .+...+...|--.++|.|+|+|..| +
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-V 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh-H
Confidence 47999999999777777775 224445588999999998763221 1111112233334899999999996 8
Q ss_pred cchhhhHHHHHHHHHhCCCCe-EEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q 009946 291 DWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~ 344 (522)
||. |.++++++++|+||+.| .+.+=. +.. +...|.++..++.+.++.
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iavW~-----Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAVWN-----YND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEEEE-----ccC-CCcCCHHHHHHHHHHhhc
Confidence 887 56789999999999877 555422 111 333477777888877765
No 88
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.91 E-value=1.3e-08 Score=98.89 Aligned_cols=95 Identities=17% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
..+|||||||+|.++..+++.--..-.+.+.|+++.+++.|+++ +. ++.+..+|........++||+|++...
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 151 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA- 151 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC-
Confidence 46899999999999988875311012344456666666655543 33 367888887665445578999998763
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.++. ..++.++|+|||++++..
T Consensus 152 ~~~~------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTI------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cchh------hHHHHHhcCcCcEEEEEE
Confidence 4443 357889999999999855
No 89
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=9.9e-09 Score=104.62 Aligned_cols=124 Identities=19% Similarity=0.309 Sum_probs=80.5
Q ss_pred CCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCC-CCceEEEeccccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-RSFELAHCSRCRI 290 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d-~sFDlVv~s~~~l 290 (522)
++++|||+|||+|.++...+.. .+.|+|+++..+..+.. .++.++.+..........+..+. +.||+|+++- +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e-Na~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI--L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE-NARLNGVELLVQAKGFLLLEVPENGPFDVIVANI--L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH-HHHHcCCchhhhcccccchhhcccCcccEEEehh--h
Confidence 4588999999999888777653 47777777666544443 33333444211111122222333 5899999875 2
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
. .-...+..++.+.|||||+++++.--. ..-+.+.+.+++.||+++.....
T Consensus 239 A--~vl~~La~~~~~~lkpgg~lIlSGIl~--------~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 239 A--EVLVELAPDIKRLLKPGGRLILSGILE--------DQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred H--HHHHHHHHHHHHHcCCCceEEEEeehH--------hHHHHHHHHHHhCCCeEeEEEec
Confidence 2 123578999999999999999987221 12346777788899999876544
No 90
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.88 E-value=1.9e-08 Score=97.01 Aligned_cols=119 Identities=14% Similarity=0.104 Sum_probs=78.6
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCCC-CCCCCCceEEEecc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRL-PYPSRSFELAHCSR 287 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~l-pf~d~sFDlVv~s~ 287 (522)
...+|||+|||+|.++..++...-.+..+...|.++.+++.++++ + .++.+...|..+. +..++.||.|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 346899999999999988764311112344445555565555433 4 2567777776543 33346799999643
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~ 345 (522)
...+...++.++.++|||||++++..... ....++...+++.||..
T Consensus 120 ----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 120 ----GSEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGFNL 165 (198)
T ss_pred ----CcccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCCCe
Confidence 23455779999999999999999855321 23456777888899843
No 91
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.87 E-value=8.7e-09 Score=105.51 Aligned_cols=147 Identities=20% Similarity=0.286 Sum_probs=91.6
Q ss_pred CCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHH
Q 009946 182 PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE 258 (522)
Q Consensus 182 pgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~ 258 (522)
-..+..|..|...-.+...+++... ..++.+|||+|||+|.++...+.. .|.++|+++..+..+. +.++.
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~ 206 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAEL 206 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHH
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHH
Confidence 3446678878766666555555422 123468999999999877665542 5778887776654444 33444
Q ss_pred cCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 009946 259 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338 (522)
Q Consensus 259 rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~ 338 (522)
++....+.+....+ .....||+|+++. + ..-...++..+.++|+|||+++++.--. ...+.+.+.+
T Consensus 207 N~~~~~~~v~~~~~--~~~~~~dlvvANI--~--~~vL~~l~~~~~~~l~~~G~lIlSGIl~--------~~~~~v~~a~ 272 (295)
T PF06325_consen 207 NGVEDRIEVSLSED--LVEGKFDLVVANI--L--ADVLLELAPDIASLLKPGGYLILSGILE--------EQEDEVIEAY 272 (295)
T ss_dssp TT-TTCEEESCTSC--TCCS-EEEEEEES-----HHHHHHHHHHCHHHEEEEEEEEEEEEEG--------GGHHHHHHHH
T ss_pred cCCCeeEEEEEecc--cccccCCEEEECC--C--HHHHHHHHHHHHHhhCCCCEEEEccccH--------HHHHHHHHHH
Confidence 45544444332222 3347899999765 2 1223568889999999999999987321 1245666667
Q ss_pred HhcCcEEEEEec
Q 009946 339 KSMCWKIVSKKD 350 (522)
Q Consensus 339 ~~~g~~~v~~~~ 350 (522)
++ ||++.+...
T Consensus 273 ~~-g~~~~~~~~ 283 (295)
T PF06325_consen 273 KQ-GFELVEERE 283 (295)
T ss_dssp HT-TEEEEEEEE
T ss_pred HC-CCEEEEEEE
Confidence 76 999876654
No 92
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.85 E-value=3.4e-09 Score=92.53 Aligned_cols=100 Identities=27% Similarity=0.399 Sum_probs=74.3
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCCCC--CCCCCceEEEeccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~lp--f~d~sFDlVv~s~~ 288 (522)
.+|||+|||+|.++..++... ...+.+.|+++..++.++.+ + .++.+...|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 479999999999999988763 45677778888887877765 2 35788988877665 77889999998653
Q ss_pred cccch-------hhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 289 RIDWL-------QRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 289 ~l~~~-------~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
..... .....+++++.++|||||.+++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 22211 1225789999999999999999875
No 93
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.84 E-value=3e-08 Score=97.55 Aligned_cols=96 Identities=16% Similarity=0.046 Sum_probs=69.8
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHH-HcC----------------CCeEEEEeCCCCCCCC-C
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL-ERG----------------IPSTLGVLGTKRLPYP-S 277 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~-~rg----------------~~~~~~~~d~~~lpf~-d 277 (522)
..+|||+|||.|..+..|+++ |.++++.|+++..++.+. +++ .++.+.++|+..++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 358999999999999999987 555666677777666542 332 3466778888777533 2
Q ss_pred CCceEEEeccccccchhhh--HHHHHHHHHhCCCCeEEEE
Q 009946 278 RSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVY 315 (522)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvi 315 (522)
..||+|+-..+ +++++.. ..++..+.++|+|||++++
T Consensus 115 ~~fd~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 57999997664 4454322 6799999999999997554
No 94
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.83 E-value=2.6e-08 Score=93.81 Aligned_cols=124 Identities=21% Similarity=0.274 Sum_probs=88.4
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHH----HcCCC--eEEEEeCCCCCCCCCCCceEEEecc--c
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL----ERGIP--STLGVLGTKRLPYPSRSFELAHCSR--C 288 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~----~rg~~--~~~~~~d~~~lpf~d~sFDlVv~s~--~ 288 (522)
.+|||+|||.|.+...|++....+ .+.++|.++.++..|+ ..+.+ +.|.+.|+..-.+..+.||+|+--. .
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 389999999999999999764332 3666677777776654 33544 8899999777677778899887522 1
Q ss_pred cccchhh-----hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 289 RIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 289 ~l~~~~d-----~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
++...++ +..++..+.++|+|||.|+|+.-+.- .+++.+..+..+|+......
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---------~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---------KDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc---------HHHHHHHHhcCCeEEEEeec
Confidence 1222211 24589999999999999999875542 45777888888887775544
No 95
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.83 E-value=9e-09 Score=108.71 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=71.8
Q ss_pred CCeEEEECCCCchHHHHHhhC----CCcccccCcccccHHHHHHHHHcCC-CeEEEEeCCCCC--CCCCCCceEEEeccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~v~gvdis~~Dis~a~i~~A~~rg~-~~~~~~~d~~~l--pf~d~sFDlVv~s~~ 288 (522)
...+||||||+|.++..++.+ .++|+|+....+..+..+ +.+.+. ++.+..+|+..+ .++++++|.|++..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF- 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF- 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-
Confidence 357999999999999999865 455665554444333322 233343 678888887654 47789999999765
Q ss_pred cccchhhh------HHHHHHHHHhCCCCeEEEEEe
Q 009946 289 RIDWLQRD------GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 289 ~l~~~~d~------~~~L~ei~RvLkPGG~lvis~ 317 (522)
-..|.... ..+|.++.|+|+|||.+.+.+
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 35554322 579999999999999999976
No 96
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.82 E-value=5.6e-08 Score=94.02 Aligned_cols=132 Identities=20% Similarity=0.311 Sum_probs=86.7
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHH----HHHcCCC-e-EEEEeCCCC--CCC------CCCCceEE
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQF----ALERGIP-S-TLGVLGTKR--LPY------PSRSFELA 283 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~----A~~rg~~-~-~~~~~d~~~--lpf------~d~sFDlV 283 (522)
+|||||||||.-+.+++.+ ...+...+.|..+..+.- +.+.+.+ + .-...|+.. .+. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999875 233455666666555322 2222221 1 011223222 222 34689999
Q ss_pred Eeccccccchhhh--HHHHHHHHHhCCCCeEEEEEeCCCCC-----------------CC-hhHHHHHHHHHHHHHhcCc
Q 009946 284 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA-----------------HD-PENRRIWNAMYDLLKSMCW 343 (522)
Q Consensus 284 v~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~~~-----------------~~-~e~~~~~~~l~~l~~~~g~ 343 (522)
+|.+ ++|..+-. +.++..+.++|++||.|++..|..+. ++ ....+..+++.+++.+.|+
T Consensus 107 ~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9998 57766443 67999999999999999999985422 11 1112334589999999999
Q ss_pred EEEEEecc
Q 009946 344 KIVSKKDQ 351 (522)
Q Consensus 344 ~~v~~~~~ 351 (522)
++.+...+
T Consensus 186 ~l~~~~~M 193 (204)
T PF06080_consen 186 ELEEDIDM 193 (204)
T ss_pred ccCccccc
Confidence 98876654
No 97
>PLN03075 nicotianamine synthase; Provisional
Probab=98.81 E-value=1.9e-08 Score=102.75 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCchHHHH-HhhCCCcccccCcccccHHHHHHHHHc-----C--CCeEEEEeCCCCCCCCCCCceEEEec
Q 009946 215 NIRNVLDVGCGVASFGAY-LLSHDIIAMSLAPNDVHENQIQFALER-----G--IPSTLGVLGTKRLPYPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~-La~~~v~gvdis~~Dis~a~i~~A~~r-----g--~~~~~~~~d~~~lpf~d~sFDlVv~s 286 (522)
.+++|+|||||.|.++.. ++.+......+.+.|.++.+++.|++. + ..+.|..+|+.+.+...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 458899999998855444 333323334455556667776666553 2 35889989877664334689999988
Q ss_pred cccccch-hhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 287 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 287 ~~~l~~~-~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+.+++. ++...+|..+.+.|+|||++++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 445553 677899999999999999999976
No 98
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.81 E-value=2.7e-08 Score=96.09 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=72.3
Q ss_pred CCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
...|.|+|||.+.++..+... .|...|+.... -.+..+|+..+|+++++.|++++..+++ ..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~VfcLSLM--GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVFCLSLM--GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEEEhhhh--CC
Confidence 457999999999999887643 45566554421 1356788999999999999999876433 35
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
+...++.|+.|+|||||.|+|........ ..+.+.+.++++||++..+..
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~------~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFE------NVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-------HHHHHHHHHCTTEEEEEEE-
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCc------CHHHHHHHHHHCCCeEEeccc
Confidence 77889999999999999999987543211 235677889999999987643
No 99
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.81 E-value=3.4e-08 Score=96.58 Aligned_cols=95 Identities=14% Similarity=0.009 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
..+|||||||+|.++..|++.--....+.+.|+++.+++.++++ +. ++.+..+|......+.+.||+|++..+ .
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~-~ 155 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA-G 155 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC-c
Confidence 46899999999999988875411112444456666666666554 33 578888887766556688999997763 3
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+. +...+.+.|||||.+++..
T Consensus 156 ~~------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 156 PD------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cc------chHHHHHhhCCCcEEEEEE
Confidence 32 2346778999999999854
No 100
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.78 E-value=3.7e-08 Score=81.25 Aligned_cols=96 Identities=24% Similarity=0.367 Sum_probs=72.0
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH---c--CCCeEEEEeCCCCCCC-CCCCceEEEecccccc
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE---R--GIPSTLGVLGTKRLPY-PSRSFELAHCSRCRID 291 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~---r--g~~~~~~~~d~~~lpf-~d~sFDlVv~s~~~l~ 291 (522)
++||+|||+|.++..++.. ....+...|.++.+.+.+++ . ..+..+...+...... ..++||+|++.. .++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~-~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP-PLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc-cee
Confidence 4899999999999888872 23455666777777666651 1 2346777777666553 457899999888 466
Q ss_pred c-hhhhHHHHHHHHHhCCCCeEEEEE
Q 009946 292 W-LQRDGILLLELDRLLRPGGYFVYS 316 (522)
Q Consensus 292 ~-~~d~~~~L~ei~RvLkPGG~lvis 316 (522)
+ ......+++.+.+.|+|||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 6 667788999999999999999985
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.77 E-value=6e-08 Score=94.75 Aligned_cols=96 Identities=17% Similarity=0.045 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
+..+|||||||+|.++..|++..-....+.+.|+++.+++.|+++ +. ++.+...|........+.||+|++..+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA- 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-
Confidence 346899999999999998886511111234445566666665543 33 577888887655444568999997653
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
... +...+.+.|+|||++++..
T Consensus 156 ~~~------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GPK------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccc------ccHHHHHhcCcCcEEEEEE
Confidence 332 3456889999999999854
No 102
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.76 E-value=4.5e-08 Score=100.75 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=70.2
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc------CCCeEEEEeCCCC-CCCCCCC---ceEEEe
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKR-LPYPSRS---FELAHC 285 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r------g~~~~~~~~d~~~-lpf~d~s---FDlVv~ 285 (522)
..+|||+|||+|..+..|+++...+..+.+.|+|+.|++.++++ +.++....+|..+ ++++... .++++.
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 35799999999999999887522245677778888888777654 2345667788665 4444322 233333
Q ss_pred ccccccchhh--hHHHHHHHHHhCCCCeEEEEEe
Q 009946 286 SRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 286 s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvis~ 317 (522)
..+.+++.+. ...+|++++++|+|||.|++..
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3334555543 3569999999999999999865
No 103
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.76 E-value=2.1e-07 Score=99.18 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=81.8
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCCCC-CCCceEEEecccccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lpf~-d~sFDlVv~s~~~l~ 291 (522)
.+|||+|||+|.++..++... ....+.+.|+++.+++.|+++ +.++.+..+|..+..++ .++||+|+|+.-.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 479999999999998887531 123445556666676666543 55678888886543332 357999998542111
Q ss_pred c------------h--------h----hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q 009946 292 W------------L--------Q----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (522)
Q Consensus 292 ~------------~--------~----d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~ 347 (522)
. . . -...++.++.+.|+|||.+++..... .-+.+.+++++.||..++
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~---------Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD---------QGAAVRGVLAENGFSGVE 402 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc---------HHHHHHHHHHHCCCcEEE
Confidence 0 0 0 01357778889999999998865331 134688888889997665
Q ss_pred Eec
Q 009946 348 KKD 350 (522)
Q Consensus 348 ~~~ 350 (522)
...
T Consensus 403 v~k 405 (423)
T PRK14966 403 TLP 405 (423)
T ss_pred EEE
Confidence 443
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.73 E-value=1.5e-07 Score=96.11 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=81.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
..+|||+|||+|.++..++.+. ....+.+.|+++.+++.|+++ +. ++.+...|... ++++++||+|+++--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 3679999999999999998641 123455567777777666544 43 46778777533 2345689999985210
Q ss_pred ------------ccchh------------hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q 009946 290 ------------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (522)
Q Consensus 290 ------------l~~~~------------d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~ 345 (522)
++|.+ ....++.++.++|+|||++++..... +..+.+++...||.-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~----------~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS----------MEALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHHhCCCce
Confidence 01111 12467899999999999999876431 346777788888765
Q ss_pred EEEe
Q 009946 346 VSKK 349 (522)
Q Consensus 346 v~~~ 349 (522)
....
T Consensus 270 ~~~~ 273 (284)
T TIGR03533 270 LEFE 273 (284)
T ss_pred eeec
Confidence 5443
No 105
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.70 E-value=3.5e-07 Score=92.02 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=81.5
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc-----CCCeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r-----g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
+..+|||+|||+|.++..++... ....+.+.|+++.+++.|+++ ..++.+...|... ++++++||+|+++...
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCc
Confidence 34679999999999999988652 123556667777777777654 2356777777533 2335789999984211
Q ss_pred cc-------------c------------hhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q 009946 290 ID-------------W------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (522)
Q Consensus 290 l~-------------~------------~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~ 344 (522)
+. + ......++.++.++|+|||++++..... .-..+..++++.||.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~---------~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD---------QGEAVRALLAAAGFA 256 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch---------HHHHHHHHHHhCCCc
Confidence 10 0 1122568889999999999999855221 123577788889986
Q ss_pred EEEE
Q 009946 345 IVSK 348 (522)
Q Consensus 345 ~v~~ 348 (522)
.+..
T Consensus 257 ~v~~ 260 (275)
T PRK09328 257 DVET 260 (275)
T ss_pred eeEE
Confidence 5443
No 106
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.69 E-value=2.9e-07 Score=88.55 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=64.1
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCC-CCCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKR-LPYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~-lpf~d~sFDlVv~s~~~ 289 (522)
..+|||+|||+|.++..++... .+..+.+.|.++.+++.++++ +. ++.+...|+.. ++.....+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 4689999999999998887431 123444456666666655542 33 46777777543 222223467765321
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
..+...++.++.++|+|||++++..+.
T Consensus 118 ---~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ---GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ---CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234468999999999999999998754
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.69 E-value=1.3e-07 Score=90.31 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=62.5
Q ss_pred CCCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCce
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 281 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp--------f~d~sFD 281 (522)
+..+|||+|||+|.++..++.+ .++++|+++ .+ ...++.+...|..+.+ +++++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~-----~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP-----MK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc-----cc------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 3468999999999998888654 255665554 22 1234566667765532 4567899
Q ss_pred EEEecccc-------ccch---hhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 282 LAHCSRCR-------IDWL---QRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 282 lVv~s~~~-------l~~~---~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+|++..+. +++. .....+|.++.++|+|||++++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99975320 1111 123678999999999999999965
No 108
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=1.7e-07 Score=91.93 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=99.6
Q ss_pred CCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHcCC--
Q 009946 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGI-- 261 (522)
Q Consensus 185 ~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~rg~-- 261 (522)
.+.|........+.+.+++.... ....+||+||||.|.....|.+- .-..+.+...|.++.+++..++...
T Consensus 47 ~~rFfkdR~wL~~Efpel~~~~~------~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~ 120 (264)
T KOG2361|consen 47 ENRFFKDRNWLLREFPELLPVDE------KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD 120 (264)
T ss_pred cccccchhHHHHHhhHHhhCccc------cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc
Confidence 34454555555556666666442 22237999999999888887753 2223556666888888888776621
Q ss_pred --CeEEEEeC--CC--CCCCCCCCceEEEeccccccchhh-hHHHHHHHHHhCCCCeEEEEEeCCCC-------------
Q 009946 262 --PSTLGVLG--TK--RLPYPSRSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSSPEAY------------- 321 (522)
Q Consensus 262 --~~~~~~~d--~~--~lpf~d~sFDlVv~s~~~l~~~~d-~~~~L~ei~RvLkPGG~lvis~P~~~------------- 321 (522)
.+.-.+.| .. .-|.+.+++|+|++.+....-.++ ...++.+++++|||||.+++.+=..+
T Consensus 121 e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i 200 (264)
T KOG2361|consen 121 ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCI 200 (264)
T ss_pred hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCcee
Confidence 12222223 22 234667899999987743333333 36799999999999999999763211
Q ss_pred -----CCChhHH-H--HHHHHHHHHHhcCcEEEEEec
Q 009946 322 -----AHDPENR-R--IWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 322 -----~~~~e~~-~--~~~~l~~l~~~~g~~~v~~~~ 350 (522)
-+..... . .-+++..++.++||..+....
T Consensus 201 ~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~ 237 (264)
T KOG2361|consen 201 SENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEV 237 (264)
T ss_pred ecceEEccCCceeeeccHHHHHHHHHhcccchhcccc
Confidence 1111111 1 123788889999998775443
No 109
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.69 E-value=3.9e-08 Score=95.71 Aligned_cols=136 Identities=19% Similarity=0.254 Sum_probs=88.4
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC-----CCeEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-----IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg-----~~~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
....++||.|+|.|..+..|+-.....+|+ ++..+..++.|++.- .-..+....++++..+.++||+|++..|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDl--VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDL--VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEE--EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEE--eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 456789999999999999887654444554 466788888888542 2246777788888766689999999997
Q ss_pred cccchhhh--HHHHHHHHHhCCCCeEEEEEeCCCC----CCChhH---HHHHHHHHHHHHhcCcEEEEEecce
Q 009946 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY----AHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQT 352 (522)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~~----~~~~e~---~~~~~~l~~l~~~~g~~~v~~~~~~ 352 (522)
+.|..|. -.+|+.+...|+|+|.+++-..-.. ..+.++ .+.-+.+.++++++|+++++.+.+.
T Consensus 132 -lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 132 -LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred -hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 5555444 6799999999999999998653211 112222 1234578999999999999887764
No 110
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.67 E-value=1.2e-07 Score=98.71 Aligned_cols=138 Identities=25% Similarity=0.340 Sum_probs=84.5
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---------------CCeEEEEeCCCC------C
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---------------IPSTLGVLGTKR------L 273 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---------------~~~~~~~~d~~~------l 273 (522)
...+|||+|||-|.-..-....++. .+.+.|++...++.|++|. ..+.+...|... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 5678999999988755554443221 2333344555555554442 235666666432 2
Q ss_pred CCCCCCceEEEeccccccchhh----hHHHHHHHHHhCCCCeEEEEEeCCCCC---------------------------
Q 009946 274 PYPSRSFELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYA--------------------------- 322 (522)
Q Consensus 274 pf~d~sFDlVv~s~~~l~~~~d----~~~~L~ei~RvLkPGG~lvis~P~~~~--------------------------- 322 (522)
+.....||+|-|.++ +||.-. ...+|..+...|+|||+|+.++|+...
T Consensus 140 ~~~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~ 218 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFD 218 (331)
T ss_dssp SSTTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEES
T ss_pred cccCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEec
Confidence 222358999999884 777522 245999999999999999999873100
Q ss_pred ---------------------CChhHHHHHHHHHHHHHhcCcEEEEEecceEEE
Q 009946 323 ---------------------HDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (522)
Q Consensus 323 ---------------------~~~e~~~~~~~l~~l~~~~g~~~v~~~~~~~iw 355 (522)
.-+|..-.|+.+.+++++.|++++...+...++
T Consensus 219 ~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~ 272 (331)
T PF03291_consen 219 SDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEFY 272 (331)
T ss_dssp CCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHHH
T ss_pred ccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHHH
Confidence 112233458899999999999999876654433
No 111
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.66 E-value=2.4e-07 Score=94.51 Aligned_cols=121 Identities=14% Similarity=0.200 Sum_probs=79.8
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCceEEEeccc--
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFDlVv~s~~-- 288 (522)
.+|||+|||+|.++..++... ....+.+.|+++.+++.|+++ +. ++.+..+|... ++++++||+|+++.-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 579999999999999998641 123455567777777766653 33 37788777544 344458999998510
Q ss_pred ----------cccchh------------hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHH-hcCcEE
Q 009946 289 ----------RIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKI 345 (522)
Q Consensus 289 ----------~l~~~~------------d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~-~~g~~~ 345 (522)
...|.+ ....++.++.+.|+|||++++...... -..+.+++. ..||..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q---------~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ---------QKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH---------HHHHHHHHHhcCCCce
Confidence 112221 235688999999999999998764321 235666666 467865
Q ss_pred EEE
Q 009946 346 VSK 348 (522)
Q Consensus 346 v~~ 348 (522)
+..
T Consensus 265 ~~~ 267 (284)
T TIGR00536 265 VEN 267 (284)
T ss_pred eEE
Confidence 443
No 112
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.66 E-value=1.5e-07 Score=93.11 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=82.8
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
....|.|+|||.+.++... ...|..+|+.+. +-.+..+|+.++|++|++.|++++..++ ...
T Consensus 180 ~~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLSL--MGT 241 (325)
T ss_pred CceEEEecccchhhhhhcc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHhh--hcc
Confidence 3467999999999887622 225666666442 2345677899999999999999976532 346
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
+...++.|++|+|+|||.++|..-.....+ -..+.+.+..+||++......
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SRf~d------v~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSRFSD------VKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhhccc------HHHHHHHHHHcCCeeeehhhh
Confidence 788899999999999999999764332111 234778889999998876554
No 113
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=4.3e-08 Score=95.25 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=100.1
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc---CCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
..++|||||.|.+..+|...+|- .+.-.|.|..|++.++.. ++.....+.|.+.++|.+++||+|+++. .+||+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhhhh
Confidence 45999999999999999887533 445567888888887765 4456778899999999999999999888 59999
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEEeCCCCC--------CChh------------HHHHHHHHHHHHHhcCcEEEEEecce
Q 009946 294 QRDGILLLELDRLLRPGGYFVYSSPEAYA--------HDPE------------NRRIWNAMYDLLKSMCWKIVSKKDQT 352 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvis~P~~~~--------~~~e------------~~~~~~~l~~l~~~~g~~~v~~~~~~ 352 (522)
.+....+..++..|||+|.|+-+.-.... ...+ ....-+.+..++.++||.......+.
T Consensus 151 NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDE 229 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDE 229 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecccc
Confidence 99999999999999999999865421100 0000 01112367778899999887665543
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.61 E-value=1.4e-06 Score=87.44 Aligned_cols=121 Identities=15% Similarity=0.106 Sum_probs=77.4
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC--CCeEEEEeCCCC-CCC-CCCCceEEEecccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LPY-PSRSFELAHCSRCRID 291 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg--~~~~~~~~d~~~-lpf-~d~sFDlVv~s~~~l~ 291 (522)
..+|||+|||+|.++..++... .+..+.+.|+++.+++.|+++- ....+...|..+ ++- ..++||+|+++---+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3579999999999999987541 1234455567777777666541 124667777543 221 1257999998631110
Q ss_pred -------------ch--------hh----hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q 009946 292 -------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 292 -------------~~--------~d----~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
|. .+ ...++..+.++|+|||.+++..... ...++..++++.||+..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------~~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------QAPLAVEAFARAGLIAR 236 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------hHHHHHHHHHHCCCCce
Confidence 00 00 1367888889999999999876432 13467778888888654
No 115
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.61 E-value=2.6e-07 Score=89.91 Aligned_cols=94 Identities=16% Similarity=0.041 Sum_probs=64.6
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
+..+|||||||+|.++..|+... -.+...|.++.+++.++++ +. ++.+...|......+.++||+|++..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~- 153 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA- 153 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-
Confidence 34789999999999988777641 1344456666776666554 33 467777775443223478999997763
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
.++ +..++.+.|+|||.+++...
T Consensus 154 ~~~------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APE------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chh------hhHHHHHhcCCCcEEEEEEc
Confidence 433 34567899999999998764
No 116
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.57 E-value=6.4e-07 Score=92.56 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=77.4
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCceEEEecccc-
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 289 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFDlVv~s~~~- 289 (522)
.+|||+|||+|.++..++... ....+.+.|+++.+++.|+++ +. ++.+...|... ++++++||+|+|+--.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 579999999999999998641 123455556777777666544 33 47788888543 2345689999985210
Q ss_pred -----------ccchh------------hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q 009946 290 -----------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 290 -----------l~~~~------------d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
++|.+ ....++.++.++|+|||++++..... ...+.+++...+|.-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----------~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----------RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHhhCCCEEE
Confidence 01111 12468899999999999999865331 2346666777776443
No 117
>PHA03411 putative methyltransferase; Provisional
Probab=98.57 E-value=3.4e-07 Score=92.54 Aligned_cols=129 Identities=9% Similarity=0.019 Sum_probs=89.7
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhh-
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR- 295 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d- 295 (522)
.+|||+|||+|.++..++.+. .+..+.+.|+++.+++.++++..++.+...|+..+.. +++||+|+++....+....
T Consensus 66 grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchh
Confidence 579999999999988886641 1246667788888999988876678888888877653 4689999986532221110
Q ss_pred ------------------hHHHHHHHHHhCCCCeEEEEEeC--CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 296 ------------------DGILLLELDRLLRPGGYFVYSSP--EAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 296 ------------------~~~~L~ei~RvLkPGG~lvis~P--~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
...++..+.++|+|+|.+.+..- +.|. .. -.-+++.++++..||....-.+.
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~-~s---l~~~~y~~~l~~~g~~~~~~~~~ 215 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYD-GT---MKSNKYLKWSKQTGLVTYAGCGI 215 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccc-cc---CCHHHHHHHHHhcCcEecCCCCc
Confidence 24577888999999998876532 1111 00 11347888999999988765553
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.56 E-value=6.7e-07 Score=91.35 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----------CCCeEEEEeCCCCC-CCCCCCceEE
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKRL-PYPSRSFELA 283 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----------g~~~~~~~~d~~~l-pf~d~sFDlV 283 (522)
.+++|||||||+|.++..++++. ....++..|+++.+++.|++. ..++.+...|.... ...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45789999999999999988751 122455567777777777764 23567777885442 3345789999
Q ss_pred Eeccccccchhh----hHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 284 HCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 284 v~s~~~l~~~~d----~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
++.. ..++.+. ..++++.+.+.|+|||.+++....
T Consensus 155 i~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 155 IVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9743 2333221 256899999999999999986543
No 119
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.50 E-value=1.1e-06 Score=86.81 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=73.7
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH-----------------cCCCeEEEEeCCCCCCCC--
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE-----------------RGIPSTLGVLGTKRLPYP-- 276 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~-----------------rg~~~~~~~~d~~~lpf~-- 276 (522)
..+||+.|||.|.-+.+|+++ |.++.+.|+|+..++.+.+ ++..+.+.++|+.+++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 468999999999999999987 4555556666666666533 245788999998888642
Q ss_pred -CCCceEEEeccccccchhhh-HHHHHHHHHhCCCCeEEEEEe
Q 009946 277 -SRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 277 -d~sFDlVv~s~~~l~~~~d~-~~~L~ei~RvLkPGG~lvis~ 317 (522)
.+.||+|+-..+.++..++. ..+.+.+.++|+|||.+++.+
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 25799998655433333333 679999999999999998765
No 120
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.49 E-value=9.1e-07 Score=97.37 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=78.6
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFDlVv~s~~~ 289 (522)
..+|||+|||+|.++..++... ....+.+.|+++.+++.|+++ +. ++.+...|... +++.++||+|+|+.-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 4689999999999998887531 123445556666666666554 33 46677776432 2345689999984211
Q ss_pred c-------------cchh------------hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q 009946 290 I-------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (522)
Q Consensus 290 l-------------~~~~------------d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~ 344 (522)
+ .|.+ ....++.++.++|+|||.+++..... .-+.+.+++.+.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---------q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---------QEEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---------hHHHHHHHHHhcCCC
Confidence 1 1111 11347788999999999999865321 134677888888987
Q ss_pred EEEE
Q 009946 345 IVSK 348 (522)
Q Consensus 345 ~v~~ 348 (522)
.+..
T Consensus 288 ~~~~ 291 (506)
T PRK01544 288 IESV 291 (506)
T ss_pred ceEE
Confidence 6543
No 121
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.49 E-value=4.7e-07 Score=87.61 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=78.2
Q ss_pred eEEEECCCCchHHHHHhhC----CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCC-CC--CCCCCceEEEeccccc
Q 009946 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 290 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~----~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~-lp--f~d~sFDlVv~s~~~l 290 (522)
.+||||||.|.+...++.. +++|+++...-+..+.....+....++.+..+|+.. +. ++++++|.|+..+. -
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 6999999999999999854 566776666555444433333334578888888766 32 56789999996552 4
Q ss_pred cchhh--------hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHh--cCcEEEE
Q 009946 291 DWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS--MCWKIVS 347 (522)
Q Consensus 291 ~~~~d--------~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~--~g~~~v~ 347 (522)
.|... ...+|..+.++|+|||.|.+.+- ....++.+.+.++. .+|+...
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD--------~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD--------VEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC--------CHHHHHHHHHHHHhcCcCeEEcc
Confidence 44321 15699999999999999999762 12335556666666 3776664
No 122
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=1.1e-06 Score=95.07 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=79.9
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCC----CCCCCceEEEe-
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLP----YPSRSFELAHC- 285 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lp----f~d~sFDlVv~- 285 (522)
..+|||+|||+|..+..+++..-....+.+.|+++.+++.++++ |. ++.+...|...++ +..++||.|++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 46899999999999988876411112445556666666655443 44 4677888877765 44578999995
Q ss_pred ---cc-ccccchhh----------------hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhc-CcE
Q 009946 286 ---SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWK 344 (522)
Q Consensus 286 ---s~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-g~~ 344 (522)
+. .+++..++ ...+|.++.++|||||++++++-... ..|+. ..+..++++. +|+
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~--~~Ene---~~v~~~l~~~~~~~ 407 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH--PAENE---AQIEQFLARHPDWK 407 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC--hhhHH---HHHHHHHHhCCCcE
Confidence 21 12322222 25689999999999999998874432 22222 2345555554 455
Q ss_pred E
Q 009946 345 I 345 (522)
Q Consensus 345 ~ 345 (522)
+
T Consensus 408 ~ 408 (434)
T PRK14901 408 L 408 (434)
T ss_pred e
Confidence 3
No 123
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.48 E-value=6.4e-07 Score=96.54 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=69.9
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEE--EEeCCCCCCC--CCCCceEEEe--
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTL--GVLGTKRLPY--PSRSFELAHC-- 285 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~--~~~d~~~lpf--~d~sFDlVv~-- 285 (522)
..+|||+|||+|..+..+++..- ...+.+.|+++.+++.++++ |..+.+ ..+|....++ ++++||.|++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 46899999999999998886421 23456667777776665544 554433 4445444443 4578999984
Q ss_pred --cc-ccccchhh----------------hHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 286 --SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 286 --s~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
+. .+++..++ ...+|.++.++|||||++++++-..
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 22 12332222 2569999999999999999988544
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.48 E-value=7.1e-07 Score=96.26 Aligned_cols=105 Identities=24% Similarity=0.340 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCC--CCCCCceEEEe---
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP--YPSRSFELAHC--- 285 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lp--f~d~sFDlVv~--- 285 (522)
+..+|||+|||+|..+..+++.. .+..+.+.|.++.+++.++++ +..+.+...|...++ ++.++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 34689999999999999988652 113455667777776666543 556777888877654 34578999994
Q ss_pred -ccc-cc------cchhh----------hHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 286 -SRC-RI------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 286 -s~~-~l------~~~~d----------~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
+.. ++ .|... ...+|.++.++|||||++++++-..
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 321 11 12111 2368999999999999999988543
No 125
>PRK01581 speE spermidine synthase; Validated
Probab=98.48 E-value=2.8e-06 Score=89.01 Aligned_cols=130 Identities=16% Similarity=0.137 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc------------CCCeEEEEeCCCC-CCCCCCCc
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKR-LPYPSRSF 280 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r------------g~~~~~~~~d~~~-lpf~d~sF 280 (522)
..+++||+||||+|..+..+++.. ....++.+|+++.+++.|++. ..++.+...|..+ +.-..+.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 345789999999999888888652 223566678888999998861 3467778888554 33345689
Q ss_pred eEEEeccccccc---h--hhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q 009946 281 ELAHCSRCRIDW---L--QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 281 DlVv~s~~~l~~---~--~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~ 349 (522)
|+|++... -.. . ....+++..+.+.|+|||.+++...... .....+..+.+.+++.++.+....
T Consensus 228 DVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~----~~~~~~~~i~~tL~~af~~v~~y~ 296 (374)
T PRK01581 228 DVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA----DAPLVYWSIGNTIEHAGLTVKSYH 296 (374)
T ss_pred cEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh----hhHHHHHHHHHHHHHhCCceEEEE
Confidence 99996531 111 1 1115689999999999999988653322 112233346777888888766443
No 126
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.45 E-value=4.3e-07 Score=92.36 Aligned_cols=99 Identities=23% Similarity=0.402 Sum_probs=69.2
Q ss_pred CCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHc-----------CCCeEEEEeCC------CCCCC
Q 009946 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-----------GIPSTLGVLGT------KRLPY 275 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~r-----------g~~~~~~~~d~------~~lpf 275 (522)
+..+||+|||-|.-++..-.+ .++++||+ +.-++.|++| -.++.|..+|. ..+++
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIA-----evSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIA-----EVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehh-----hccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 456999999999766555443 34455554 4444444443 12467777773 23556
Q ss_pred CCCCceEEEeccccccch----hhhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 276 PSRSFELAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 276 ~d~sFDlVv~s~~~l~~~----~d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
++.+||+|-|.+| +||. .....+|+++.+.|||||+|+-+.|+.
T Consensus 193 ~dp~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 193 KDPRFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCCCcceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 6667999999885 7774 223569999999999999999999885
No 127
>PRK04457 spermidine synthase; Provisional
Probab=98.44 E-value=8.6e-07 Score=89.57 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc------CCCeEEEEeCCCCC-CCCCCCceEEEecc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRL-PYPSRSFELAHCSR 287 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r------g~~~~~~~~d~~~l-pf~d~sFDlVv~s~ 287 (522)
.+++|||||||+|.++..++.+. ....++..|+++.+++.|++. ..++.+..+|..+. .-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35789999999999999887652 244566678888888888875 13467787875432 22236799999642
Q ss_pred ccccchh---hhHHHHHHHHHhCCCCeEEEEEe
Q 009946 288 CRIDWLQ---RDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~---d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
..-...+ ....+++++.++|+|||.+++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 1111111 12679999999999999999853
No 128
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=3.6e-06 Score=83.62 Aligned_cols=117 Identities=20% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCCCCCCCCCceEEEeccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~lpf~d~sFDlVv~s~~ 288 (522)
.+.+|||.|.|+|.++.+|+..-.-.-.+...+..+...+.|+++ + .++.+...|..+.-+++ .||+|+.
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L--- 169 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL--- 169 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE---
Confidence 357899999999999999995311111233335555555666554 2 23677778877776665 8999982
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
-++++..++..++.+|+|||.+++..|... +.++....+++.||.-.
T Consensus 170 ---Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ve--------Qv~kt~~~l~~~g~~~i 216 (256)
T COG2519 170 ---DLPDPWNVLEHVSDALKPGGVVVVYSPTVE--------QVEKTVEALRERGFVDI 216 (256)
T ss_pred ---cCCChHHHHHHHHHHhCCCcEEEEEcCCHH--------HHHHHHHHHHhcCccch
Confidence 257888999999999999999999888752 23344444566688544
No 129
>PRK03612 spermidine synthase; Provisional
Probab=98.39 E-value=2.2e-06 Score=94.71 Aligned_cols=125 Identities=15% Similarity=0.049 Sum_probs=86.8
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc------------CCCeEEEEeCCCCC-CCCCCCce
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRL-PYPSRSFE 281 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r------------g~~~~~~~~d~~~l-pf~d~sFD 281 (522)
++++|||||||+|..+..++++. ...+++..|+++.+++.+++. ..++++...|..+. ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45789999999999999888652 113566678888898988872 13567777776542 22346899
Q ss_pred EEEeccccccchhh-----hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q 009946 282 LAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (522)
Q Consensus 282 lVv~s~~~l~~~~d-----~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~ 345 (522)
+|++.. ..++.+. ..++++.+.+.|||||.+++.....+.. .+.+.++.+.+++.||.+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCEE
Confidence 999764 2332221 1468999999999999999876433221 233456778888999943
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.39 E-value=1.2e-06 Score=94.95 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=69.4
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEe----c
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHC----S 286 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~----s 286 (522)
..+|||+|||+|..+..+++..-.+..+.+.|+++.+++.++++ |. ++.+...|...++ ++++||.|++ +
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT 329 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence 46899999999998888775311112455556666666655443 54 4677888877765 4578999994 2
Q ss_pred cc-cc------cchh----------hhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 287 RC-RI------DWLQ----------RDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 287 ~~-~l------~~~~----------d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
.. ++ .|.. ....+|.++.++|||||++++++-..
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 21 11 1111 12358999999999999999988543
No 131
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.38 E-value=1.3e-06 Score=84.62 Aligned_cols=105 Identities=20% Similarity=0.389 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCc----hHHHHHhh--CCCc--ccccCcccccHHHHHHHHHc--------CC-----------------
Q 009946 215 NIRNVLDVGCGVA----SFGAYLLS--HDII--AMSLAPNDVHENQIQFALER--------GI----------------- 261 (522)
Q Consensus 215 ~~~~VLDIGCGtG----~~a~~La~--~~v~--gvdis~~Dis~a~i~~A~~r--------g~----------------- 261 (522)
+.-+|+..||++| +++..|.+ .... .+.|.+.|+++.+++.|++. +.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5578999999999 45555555 1222 47888999999999988753 11
Q ss_pred --------CeEEEEeCCCCCCCCCCCceEEEeccccccchhhh--HHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 262 --------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 262 --------~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
.+.|...++.+.+.+.+.||+|+|.+. +-|.... ..++..+++.|+|||+|++.....
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 256777776663334578999999995 4455433 679999999999999999966443
No 132
>PLN02366 spermidine synthase
Probab=98.38 E-value=4.7e-06 Score=86.13 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc---------CCCeEEEEeCCCCC-C-CCCCCceEE
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-P-YPSRSFELA 283 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---------g~~~~~~~~d~~~l-p-f~d~sFDlV 283 (522)
++++||+||||.|.++..++++. ....++..|+.+.+++.|++. ..++.+...|.... . .+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 46789999999999999998762 112344456677777777764 23577888885332 1 235689999
Q ss_pred Eeccccccchhh----hHHHHHHHHHhCCCCeEEEEEeCCCC
Q 009946 284 HCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 321 (522)
Q Consensus 284 v~s~~~l~~~~d----~~~~L~ei~RvLkPGG~lvis~P~~~ 321 (522)
++-. ..++.+. ...+++.+.++|+|||.++......+
T Consensus 170 i~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 170 IVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMW 210 (308)
T ss_pred EEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcc
Confidence 9643 2222221 24689999999999999987554433
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.37 E-value=3.9e-06 Score=85.08 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---------CCeEEEEeCCCC-CCCCCCCceEEE
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---------IPSTLGVLGTKR-LPYPSRSFELAH 284 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---------~~~~~~~~d~~~-lpf~d~sFDlVv 284 (522)
++++||+||||+|.++..++.+. ....++..|+++.+++.+++.- .++.+...|... +....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 35689999999999998887652 1234555567777777776641 245566655432 122246899999
Q ss_pred eccccccchhh----hHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 285 ~s~~~l~~~~d----~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
+... ....+. ..++++.+.++|+|||.+++....
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 7542 222211 357899999999999999987543
No 134
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.37 E-value=1.9e-06 Score=89.63 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=64.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
..+|||||||+|.++..+++..-..-.+.+.|.++.+++.|+++ +. ++.+..+|....+...++||+|++... .
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 36899999999999999886411111244456666666666542 43 467777776665555567999997653 3
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+. ....+.+.|+|||.+++..
T Consensus 160 ~~------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 160 DE------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred HH------hHHHHHHhcCCCCEEEEEe
Confidence 32 2345678999999999865
No 135
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=1.6e-06 Score=93.67 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=71.4
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCC-CCCCCceEEEe----
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLP-YPSRSFELAHC---- 285 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lp-f~d~sFDlVv~---- 285 (522)
+.+|||+|||+|..+.+++...-.+..+.+.|+++.+++.++++ |. ++.+...|...++ +.+++||.|++
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 46899999999999888876411123455567777777666544 44 3677788877766 44578999996
Q ss_pred cc-ccccchh----------------hhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 286 SR-CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 286 s~-~~l~~~~----------------d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
+. ..+...+ ...++|.++.+.|||||.+++++-.
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 22 1121111 1245799999999999999998854
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.35 E-value=2.2e-06 Score=80.62 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=65.6
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---CCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
..+|||||||+|.++..++++ +..+.+.|+++.+++.++++. .++.+...|+.++++++..||.|+++. -.+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~- 88 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-PYN- 88 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC-Ccc-
Confidence 357999999999999999986 234555677777777776652 357888999999988877899998654 222
Q ss_pred hhhhHHHHHHHHHh--CCCCeEEEEE
Q 009946 293 LQRDGILLLELDRL--LRPGGYFVYS 316 (522)
Q Consensus 293 ~~d~~~~L~ei~Rv--LkPGG~lvis 316 (522)
.. ...+..+.+. +.++|.+++.
T Consensus 89 ~~--~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 89 IS--TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cH--HHHHHHHHhcCCCcceEEEEEE
Confidence 21 2333333322 4578888774
No 137
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.34 E-value=2.7e-06 Score=85.96 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=69.0
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEe----c
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHC----S 286 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~----s 286 (522)
..+|||+|||+|..+..+++..-....+.+.|+++.+++.++++ +. ++.+...|...++...+.||.|++ +
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 46899999999999988876411112355556666666655443 43 467777777666655567999985 2
Q ss_pred cc-ccc--------chh--------hhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 287 RC-RID--------WLQ--------RDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 287 ~~-~l~--------~~~--------d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
.. ++. +.+ ....+|.++.++|||||++++++-.
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 11 111 111 1245899999999999999998744
No 138
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.34 E-value=1e-06 Score=84.64 Aligned_cols=179 Identities=16% Similarity=0.229 Sum_probs=117.6
Q ss_pred ecCCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHH
Q 009946 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI 253 (522)
Q Consensus 174 ~~g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i 253 (522)
...+...|.|.|.+|-...+++.+ ++.+.. -.++..+.++||+|+|.|-++..++.. --++.+.++|..|+
T Consensus 77 s~TdING~lgrGsMFifSe~QF~k----lL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr 147 (288)
T KOG3987|consen 77 SQTDINGFLGRGSMFIFSEEQFRK----LLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMR 147 (288)
T ss_pred hhhccccccccCceEEecHHHHHH----HHhcCC--CccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHH
Confidence 445566777888888777776554 333321 134556789999999999999999864 23455667888998
Q ss_pred HHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCC-CeEEEEEe--CCC----------
Q 009946 254 QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYSS--PEA---------- 320 (522)
Q Consensus 254 ~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkP-GG~lvis~--P~~---------- 320 (522)
...++++.++.-. .+..-.+-+||+|.|.+ ++.-..++..+|+.++-+|+| .|..+++. |..
T Consensus 148 ~rL~kk~ynVl~~----~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~ 222 (288)
T KOG3987|consen 148 DRLKKKNYNVLTE----IEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGL 222 (288)
T ss_pred HHHhhcCCceeee----hhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCC
Confidence 8888776654322 11111233599999988 577777888999999999999 89888654 311
Q ss_pred CCCChhHH----HHHH----HHHHHHHhcCcEEEEEecceEEEeccCCcccccccCCCCCCCCCCCCCCCCcccc
Q 009946 321 YAHDPENR----RIWN----AMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWN 387 (522)
Q Consensus 321 ~~~~~e~~----~~~~----~l~~l~~~~g~~~v~~~~~~~iw~Kp~~~~c~~~r~~~~~p~lC~~~~~~d~~wY 387 (522)
+.+..+.. +.|+ .+-+++++.||.+.. | .+.|.||+.+...++.|-
T Consensus 223 ~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea-------w--------------TrlPYLCEGDm~ns~Y~L 276 (288)
T KOG3987|consen 223 PLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEA-------W--------------TRLPYLCEGDMHNSFYWL 276 (288)
T ss_pred cCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhh-------h--------------hcCCeecccccccceEEe
Confidence 11111111 1233 566778888886653 2 356889997666555443
No 139
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.32 E-value=7.3e-06 Score=78.16 Aligned_cols=118 Identities=16% Similarity=0.080 Sum_probs=75.4
Q ss_pred CCCeEEEECCCCchHHHHHhh----CCCcccccCcccccHHHHHHHHHcC-CCeEEEEeCCCCC-CCCCCCceEEEeccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL-PYPSRSFELAHCSRC 288 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~v~gvdis~~Dis~a~i~~A~~rg-~~~~~~~~d~~~l-pf~d~sFDlVv~s~~ 288 (522)
+..+++|||||+|+++..++. .++++++-++..+.....+ +++.+ .++.+..+++... +-. .+||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N-~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGGg 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERN-AARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGGG 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHH-HHHhCCCcEEEEeccchHhhcCC-CCCCEEEECCC
Confidence 346899999999999998882 2455554433222222212 22223 4677777775443 322 27999997663
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCc-EEEE
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW-KIVS 347 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~-~~v~ 347 (522)
.+.+.+|..+...|||||++++..-. .+......+.+++.|+ +++.
T Consensus 112 -----~~i~~ile~~~~~l~~ggrlV~nait--------lE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 112 -----GNIEEILEAAWERLKPGGRLVANAIT--------LETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred -----CCHHHHHHHHHHHcCcCCeEEEEeec--------HHHHHHHHHHHHHcCCceEEE
Confidence 44578999999999999999985421 1223355666788898 4443
No 140
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.31 E-value=5.4e-06 Score=89.85 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=68.4
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCC--CCCCCceEEEeccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lp--f~d~sFDlVv~s~~ 288 (522)
..+|||+|||+|..+..+++..-....+.+.|+++.+++.++++ |. ++.+...|...++ ++ ++||+|++...
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 46899999999999998886411122455556666666665443 43 4677788876653 33 68999996310
Q ss_pred -----cccchh---------h-------hHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 289 -----RIDWLQ---------R-------DGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 289 -----~l~~~~---------d-------~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
.+.+.+ + ...+|.++.++|||||.+++++-.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 111111 1 135899999999999999987744
No 141
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.29 E-value=1.5e-06 Score=85.07 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHc----CC-C
Q 009946 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER----GI-P 262 (522)
Q Consensus 193 ~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~r----g~-~ 262 (522)
......+.+.+.+. +..+|||||||+|.+++.|+.. .|++++ ..+...+.|+++ +. +
T Consensus 58 P~~~a~~l~~L~l~--------pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE-----~~~~l~~~A~~~l~~~~~~n 124 (209)
T PF01135_consen 58 PSMVARMLEALDLK--------PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVE-----RDPELAERARRNLARLGIDN 124 (209)
T ss_dssp HHHHHHHHHHTTC---------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEE-----SBHHHHHHHHHHHHHHTTHS
T ss_pred HHHHHHHHHHHhcC--------CCCEEEEecCCCcHHHHHHHHhcCccceEEEEC-----ccHHHHHHHHHHHHHhccCc
Confidence 34445555666533 3478999999999999888753 244554 444555555443 44 6
Q ss_pred eEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 263 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 263 ~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+.+..+|....-.+...||.|++..+ ... .-..+.+.||+||++++-..
T Consensus 125 v~~~~gdg~~g~~~~apfD~I~v~~a-~~~------ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 125 VEVVVGDGSEGWPEEAPFDRIIVTAA-VPE------IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEES-GGGTTGGG-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEEES
T ss_pred eeEEEcchhhccccCCCcCEEEEeec-cch------HHHHHHHhcCCCcEEEEEEc
Confidence 78888885443334467999998764 432 22457778999999998553
No 142
>PHA03412 putative methyltransferase; Provisional
Probab=98.29 E-value=2.7e-06 Score=84.26 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=68.9
Q ss_pred CCeEEEECCCCchHHHHHhhCC--CcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccc---
Q 009946 216 IRNVLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI--- 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~--v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l--- 290 (522)
..+|||+|||+|.++..++.+. -....+.+.|+++.+.+.|++....+.+...|+...++ +++||+|+++--..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 3689999999999999887531 11346777788888999998776678888888876665 46899999853211
Q ss_pred --c----c--hhhhHHHHHHHHHhCCCCeE
Q 009946 291 --D----W--LQRDGILLLELDRLLRPGGY 312 (522)
Q Consensus 291 --~----~--~~d~~~~L~ei~RvLkPGG~ 312 (522)
+ + ..-...++..+.+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 0 0 01124588888898888776
No 143
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.29 E-value=3.2e-06 Score=96.57 Aligned_cols=123 Identities=17% Similarity=0.163 Sum_probs=79.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC---CeEEEEeCCCCC-CCCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI---PSTLGVLGTKRL-PYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~---~~~~~~~d~~~l-pf~d~sFDlVv~s~ 287 (522)
.++|||+|||+|.++..++... +-.+...|+++.+++.|++. +. ++.+..+|..+. .-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 3689999999999999998652 11344556666666665543 33 467888885432 11146899999843
Q ss_pred cc----------ccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q 009946 288 CR----------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 288 ~~----------l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~ 349 (522)
-. .....+...++..+.++|+|||.++++..... +....+.+.+.|+.+....
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEEe
Confidence 11 11123446688899999999999988663321 1122566677888776544
No 144
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.29 E-value=9.8e-06 Score=81.99 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=92.6
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHH---HHHHc-------------------------------
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQ---FALER------------------------------- 259 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~---~A~~r------------------------------- 259 (522)
....+||--|||.|.++..++.+ |....+.+.|--|+- +..+.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 34568999999999999999987 555556666655532 11111
Q ss_pred -----------CCCeEEEEeCCCCCCCCC---CCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCCh
Q 009946 260 -----------GIPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP 325 (522)
Q Consensus 260 -----------g~~~~~~~~d~~~lpf~d---~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~ 325 (522)
..+.....+|..++..++ ++||+|++.+ .+.-..+.-.+|..|.++|||||+++=..|-.|....
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 001222333333333333 6899999776 4766777888999999999999999988886655443
Q ss_pred h-------HHHHHHHHHHHHHhcCcEEEEEec
Q 009946 326 E-------NRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 326 e-------~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
. ..-.++++..+++++||+++.++.
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 3 223588999999999999987665
No 145
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.26 E-value=6.8e-06 Score=80.90 Aligned_cols=132 Identities=19% Similarity=0.189 Sum_probs=84.4
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH-cCC----------------CeEEEEeCCCCCCCCC
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE-RGI----------------PSTLGVLGTKRLPYPS 277 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~-rg~----------------~~~~~~~d~~~lpf~d 277 (522)
...+||+.|||.|.-+..|+++ |.++.+.|+++..++.+.+ ++. .+.+.++|+..++...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 3468999999999999999987 6677777888888887733 322 2467788887776443
Q ss_pred -CCceEEEeccccccchhh-hHHHHHHHHHhCCCCeEEEEEe---CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 278 -RSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSS---PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 278 -~sFDlVv~s~~~l~~~~d-~~~~L~ei~RvLkPGG~lvis~---P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
++||+|+=..+.....++ ...+.+.+.++|+|||.+++.+ +......+...-.-+++.+++. .+|++...+.
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 479999954332222233 3679999999999999954433 1111111111112346777777 7888776554
No 146
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.25 E-value=3.4e-06 Score=83.61 Aligned_cols=99 Identities=21% Similarity=0.230 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
.+.++|||||+|+|.++..++++. ..+.+.-.|. +..++.+++ ..++.+..+|.. -++|. +|+++.++.++.|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 445789999999999999998752 2234444455 445566666 678999999976 56664 99999999644554
Q ss_pred hhh-HHHHHHHHHhCCCC--eEEEEEeC
Q 009946 294 QRD-GILLLELDRLLRPG--GYFVYSSP 318 (522)
Q Consensus 294 ~d~-~~~L~ei~RvLkPG--G~lvis~P 318 (522)
++. ..+|+++++.|+|| |+++|.++
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 433 56999999999999 99999874
No 147
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.3e-05 Score=81.94 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=75.7
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
+|||||||+|.++..++.... ..++.+.|+++.+++.|++. +. ++.+...|. +.--.++||+|+|+---+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl--f~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDL--FEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec--ccccCCceeEEEeCCCCCCC
Confidence 799999999999999987522 13556667777777766544 43 223333321 22112489999985321111
Q ss_pred h------------------------hhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcC-cEEEE
Q 009946 293 L------------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 347 (522)
Q Consensus 293 ~------------------------~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-~~~v~ 347 (522)
. .-...++.++.+.|+|||.+++..-.. .-+.+.+++.+.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---------q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---------QGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---------cHHHHHHHHHhcCCceEEE
Confidence 1 011458889999999999999865322 1346888899999 55444
Q ss_pred E
Q 009946 348 K 348 (522)
Q Consensus 348 ~ 348 (522)
.
T Consensus 261 ~ 261 (280)
T COG2890 261 T 261 (280)
T ss_pred E
Confidence 3
No 148
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.23 E-value=7.3e-06 Score=81.46 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=64.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCC-C-----CCCCCceEE
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRL-P-----YPSRSFELA 283 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~l-p-----f~d~sFDlV 283 (522)
+++|||||||+|..+..|+...-....+...|.++.+.+.|++. +. .+.+..+|+.+. + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 47899999999987777764311122344445555555555443 43 467777775442 2 124689999
Q ss_pred EeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 284 v~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
++-.. -+....++..+.++|||||.+++..
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 85431 2344578999999999999988754
No 149
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.23 E-value=2.2e-06 Score=84.77 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=73.9
Q ss_pred CeEEEECCCCchHHHHHhhC----CCcccccCcccccHHHHHHHHHcCC-CeEEEEeCCCCCC---CCCCCceEEEeccc
Q 009946 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP---YPSRSFELAHCSRC 288 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~v~gvdis~~Dis~a~i~~A~~rg~-~~~~~~~d~~~lp---f~d~sFDlVv~s~~ 288 (522)
..+||||||.|.+...+|++ .++|+++...-+. .+.+.+.+.++ ++.+...|+..+- +++++.|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~-~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVA-KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHH-HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 46999999999999999976 5667766654433 33355666788 8999888865432 45569999997663
Q ss_pred cccchhhh--------HHHHHHHHHhCCCCeEEEEEe
Q 009946 289 RIDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 289 ~l~~~~d~--------~~~L~ei~RvLkPGG~lvis~ 317 (522)
-.|.... ..++..+.++|+|||.|.+.+
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5554322 469999999999999999966
No 150
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.21 E-value=8.9e-06 Score=83.21 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=82.0
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCc----hHHHHHhhC--C-CcccccCcccccHHHHHHH
Q 009946 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLSH--D-IIAMSLAPNDVHENQIQFA 256 (522)
Q Consensus 184 g~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG----~~a~~La~~--~-v~gvdis~~Dis~a~i~~A 256 (522)
+.+.|.+...++... .+.+.. ....-+|+..||+|| +++..|.+. . -..+.|.+.|+++..++.|
T Consensus 92 neT~FFRd~~~f~~L-~~~~~~-------~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~A 163 (287)
T PRK10611 92 NLTAFFREAHHFPIL-AEHARR-------RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKA 163 (287)
T ss_pred CCCCccCCcHHHHHH-HHHHHh-------cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHH
Confidence 455666666655443 332211 112368999999999 444445442 1 1146788889999998888
Q ss_pred HHc--------C----------------------------CCeEEEEeCCCCCCCC-CCCceEEEeccccccchh-hhHH
Q 009946 257 LER--------G----------------------------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQ-RDGI 298 (522)
Q Consensus 257 ~~r--------g----------------------------~~~~~~~~d~~~lpf~-d~sFDlVv~s~~~l~~~~-d~~~ 298 (522)
++. + ..+.|...++.+.+++ .+.||+|+|.++.+++.+ ....
T Consensus 164 r~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~ 243 (287)
T PRK10611 164 RSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQER 243 (287)
T ss_pred HhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHH
Confidence 753 0 0134556665554443 578999999885444332 3467
Q ss_pred HHHHHHHhCCCCeEEEEEeC
Q 009946 299 LLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 299 ~L~ei~RvLkPGG~lvis~P 318 (522)
++..+++.|+|||+|++...
T Consensus 244 vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 244 ILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHHHhCCCcEEEEeCc
Confidence 99999999999999888553
No 151
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.20 E-value=3.2e-05 Score=76.64 Aligned_cols=122 Identities=22% Similarity=0.198 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeE-EEEeCCCCCC-----CCCCCceEEEeccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-----YPSRSFELAHCSRC 288 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~-~~~~d~~~lp-----f~d~sFDlVv~s~~ 288 (522)
...+|||+|||+|.|+..++++. +-.+.+.|++..|+........++. +...++..+. ..-..||++++|..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 34689999999999999998762 2234555666666655444444432 3333333222 12236787776653
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCC------------CChhH-HHHHHHHHHHHHhcCcEEEEE
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPEN-RRIWNAMYDLLKSMCWKIVSK 348 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~------------~~~e~-~~~~~~l~~l~~~~g~~~v~~ 348 (522)
..|..+.++|+| |.+++-.-+.+. ++... ....+++...+.+.||.+...
T Consensus 153 ---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 153 ---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred ---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 258899999999 777765432111 12222 234456777778889887643
No 152
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.18 E-value=1e-05 Score=87.73 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=76.9
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCC----CCCCCCCceEEEec
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKR----LPYPSRSFELAHCS 286 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~----lpf~d~sFDlVv~s 286 (522)
..+|||+|||+|.++..|+.. +..+.+.|+++.+++.|+++ +. ++.+..+|+.+ +++.+++||+|++.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 368999999999999999875 23455556667776666543 33 57888888643 33556789999965
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEeCC-CCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~-~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
-- +.. ....+..+.+ ++|++.++++..+ +..+ ++.. +.+.||++.+.+..
T Consensus 375 PP---r~g-~~~~~~~l~~-~~~~~ivyvSCnp~tlaR---------Dl~~-L~~~gY~l~~i~~~ 425 (443)
T PRK13168 375 PP---RAG-AAEVMQALAK-LGPKRIVYVSCNPATLAR---------DAGV-LVEAGYRLKRAGML 425 (443)
T ss_pred cC---CcC-hHHHHHHHHh-cCCCeEEEEEeChHHhhc---------cHHH-HhhCCcEEEEEEEe
Confidence 42 111 2345555555 6999999998633 3222 2333 34578988876654
No 153
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.2e-06 Score=79.69 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHc----CC-CeEEEEe
Q 009946 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI-PSTLGVL 268 (522)
Q Consensus 196 ~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~ 268 (522)
...+.+.+.+. ...+|||||||+|..++.|++. .|.++ +..+...+.|+++ |. ++.+.++
T Consensus 61 vA~m~~~L~~~--------~g~~VLEIGtGsGY~aAvla~l~~~V~si-----Er~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 61 VARMLQLLELK--------PGDRVLEIGTGSGYQAAVLARLVGRVVSI-----ERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred HHHHHHHhCCC--------CCCeEEEECCCchHHHHHHHHHhCeEEEE-----EEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 34455555533 3478999999999999999874 44444 4555555666543 44 6788888
Q ss_pred CCC-CCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 269 GTK-RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 269 d~~-~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
|.. -+| +...||.|+...+ ...++ ..+.+.||+||++++-.
T Consensus 128 DG~~G~~-~~aPyD~I~Vtaa-a~~vP------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 128 DGSKGWP-EEAPYDRIIVTAA-APEVP------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CcccCCC-CCCCcCEEEEeec-cCCCC------HHHHHhcccCCEEEEEE
Confidence 843 344 3478999997764 43332 34567899999999855
No 154
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.16 E-value=1.9e-05 Score=82.02 Aligned_cols=97 Identities=21% Similarity=0.317 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc-----CC--C
Q 009946 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GI--P 262 (522)
Q Consensus 190 ~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r-----g~--~ 262 (522)
+++..|+..+.+++........+.+...++||||||+|.+...|+.+. .+..+.+.|+++..++.|++. +. .
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~ 167 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGA 167 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCc
Confidence 456789998888876432211223345789999999998888876541 133445555555555555432 22 2
Q ss_pred eEEEEe-CCCCC----CCCCCCceEEEecc
Q 009946 263 STLGVL-GTKRL----PYPSRSFELAHCSR 287 (522)
Q Consensus 263 ~~~~~~-d~~~l----pf~d~sFDlVv~s~ 287 (522)
+.+... +...+ ..+++.||+|+|+-
T Consensus 168 I~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 168 IRLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEEEccchhhhhhcccccCCceEEEEeCC
Confidence 344322 22221 12456899999975
No 155
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.15 E-value=1.4e-05 Score=79.97 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCC---CCCceEEEe
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYP---SRSFELAHC 285 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~---d~sFDlVv~ 285 (522)
++.+|||.|.|+|+++..|+..--..-.+.-.+.++...+.|++. +. ++.+...|...-.|+ ++.||.|+.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEE
Confidence 357899999999999999986410011233335666666666544 43 578888887654442 367999972
Q ss_pred ccccccchhhhHHHHHHHHHhC-CCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q 009946 286 SRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (522)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvL-kPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~ 348 (522)
-++++..++..+.++| ||||++++-.|.. .+-.+....+++.||..++.
T Consensus 120 ------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i--------eQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 120 ------DLPDPWEAIPHAKRALKKPGGRICCFSPCI--------EQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp ------ESSSGGGGHHHHHHHE-EEEEEEEEEESSH--------HHHHHHHHHHHHTTEEEEEE
T ss_pred ------eCCCHHHHHHHHHHHHhcCCceEEEECCCH--------HHHHHHHHHHHHCCCeeeEE
Confidence 2467778999999999 8999999988875 23445556677789977643
No 156
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.12 E-value=1.6e-05 Score=77.51 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=79.5
Q ss_pred CCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCC---CCCCceEEEecccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRCRID 291 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf---~d~sFDlVv~s~~~l~ 291 (522)
.-++|||||=+......-... .|+.+|+.+. .-.+...|..+.|. +++.||+|.||. ++.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL-VLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSL-VLN 115 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEE-EEe
Confidence 368999998754332221111 3444444331 12235567666665 367899999999 799
Q ss_pred chhhh---HHHHHHHHHhCCCCeE-----EEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 292 WLQRD---GILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 292 ~~~d~---~~~L~ei~RvLkPGG~-----lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
|++++ .+++..+.+.|+|+|. ++++.|........ .-.-+.+..+++.+||..++.+..
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSR-y~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSR-YMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccc-ccCHHHHHHHHHhCCcEEEEEEec
Confidence 99887 5699999999999999 99999864311100 011346788999999999877554
No 157
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.07 E-value=5e-05 Score=78.93 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEe-CCCCCCCCCCCceEEEecc-
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVL-GTKRLPYPSRSFELAHCSR- 287 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~-d~~~lpf~d~sFDlVv~s~- 287 (522)
++..|||==||||+++.... ..|..+.+.|+.+.|++-|+.+ ++ ...+... |+..+|+++++||.|+|-.
T Consensus 197 ~G~~vlDPFcGTGgiLiEag---l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPP 273 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAG---LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPP 273 (347)
T ss_pred cCCEeecCcCCccHHHHhhh---hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCC
Confidence 44689999999999876543 2355556667777777777654 22 2334444 9999999988999999821
Q ss_pred ---c-cccc--hhh-hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 288 ---C-RIDW--LQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 288 ---~-~l~~--~~d-~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
. ...- ..+ ...+|..+.++|++||++++..|.. ....+...+|+++....+
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------------~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD-------------PRHELEELGFKVLGRFTM 331 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------chhhHhhcCceEEEEEEE
Confidence 0 0111 112 2679999999999999999988722 123356789998876654
No 158
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.02 E-value=2.4e-05 Score=84.43 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=72.5
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCC----CCCCCCCceEEEec
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKR----LPYPSRSFELAHCS 286 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~----lpf~d~sFDlVv~s 286 (522)
..+|||+|||+|.++..|+.. +-.+.+.|+++.+++.|++. +. ++.+..+|+.+ +++.+++||+|++.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 368999999999999999875 12334445555555555443 33 57888888654 23445679999964
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
-... .-...++..+.+ |+|++.++++..+. .+..-...+.+.||++.....
T Consensus 370 PPr~---G~~~~~l~~l~~-l~~~~ivyvsc~p~---------tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 370 PPRK---GCAAEVLRTIIE-LKPERIVYVSCNPA---------TLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred cCCC---CCCHHHHHHHHh-cCCCEEEEEcCCHH---------HHHHHHHHHHHCCeeEEEEEE
Confidence 4211 112456666554 89999888864221 122223334567887765443
No 159
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.01 E-value=3e-05 Score=82.88 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=63.6
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC---CeEEEEeCCCCCC----CCCCCceEEE
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI---PSTLGVLGTKRLP----YPSRSFELAH 284 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~---~~~~~~~d~~~lp----f~d~sFDlVv 284 (522)
.++|||+|||+|.++...+... +..+...|.++.+++.|++. +. ++.+..+|+.++- ...++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 3689999999999987755431 12344445555555555443 43 4678888865431 1245899999
Q ss_pred eccccccc--------hhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 285 CSRCRIDW--------LQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 285 ~s~~~l~~--------~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+.--.+.- ..+...++..+.++|+|||.++..+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 86321111 1123456677889999999999765
No 160
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.00 E-value=2.8e-05 Score=80.55 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=72.6
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCC-CCCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPY-PSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf-~d~sFDlVv~s~~~ 289 (522)
..+|||+|||+|.++..++.+ +..+.+.|+++.+++.|++. +. ++.+..+|+.++.. ..+.||+|++.--
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP- 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP- 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC-
Confidence 368999999999999999975 23445556666666655433 44 57888888766542 3357999996532
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
.. .....+.++..-++|++.++++..+.. . -+.+..+ .||++...+..
T Consensus 250 --r~-G~~~~~~~~l~~~~~~~ivyvsc~p~t--~------~rd~~~l---~~y~~~~~~~~ 297 (315)
T PRK03522 250 --RR-GIGKELCDYLSQMAPRFILYSSCNAQT--M------AKDLAHL---PGYRIERVQLF 297 (315)
T ss_pred --CC-CccHHHHHHHHHcCCCeEEEEECCccc--c------hhHHhhc---cCcEEEEEEEe
Confidence 11 111223333444788888888764421 1 1233333 48888765543
No 161
>PLN02672 methionine S-methyltransferase
Probab=97.98 E-value=2.7e-05 Score=91.78 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C-----------------CCeEEEEeCCCCCC
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G-----------------IPSTLGVLGTKRLP 274 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g-----------------~~~~~~~~d~~~lp 274 (522)
..+|||+|||+|.++..++.+.- ...+.+.|+++.+++.|+++ + .++.+...|..+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 35799999999999999986421 12344445555555555332 1 14678888865432
Q ss_pred CC-CCCceEEEeccccc-------------cch--------------------hh----hHHHHHHHHHhCCCCeEEEEE
Q 009946 275 YP-SRSFELAHCSRCRI-------------DWL--------------------QR----DGILLLELDRLLRPGGYFVYS 316 (522)
Q Consensus 275 f~-d~sFDlVv~s~~~l-------------~~~--------------------~d----~~~~L~ei~RvLkPGG~lvis 316 (522)
-. ...||+|+++---+ +|. .| ...++.++.++|+|||.+++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 13699999842111 010 01 145788889999999999986
Q ss_pred eCCCCCCChhHHHHHHHHH-HHHHhcCcEEEE
Q 009946 317 SPEAYAHDPENRRIWNAMY-DLLKSMCWKIVS 347 (522)
Q Consensus 317 ~P~~~~~~~e~~~~~~~l~-~l~~~~g~~~v~ 347 (522)
.-.. .-+.+. +++++.||+...
T Consensus 278 iG~~---------q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 278 MGGR---------PGQAVCERLFERRGFRITK 300 (1082)
T ss_pred ECcc---------HHHHHHHHHHHHCCCCeeE
Confidence 5321 123566 588889987654
No 162
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.98 E-value=4.9e-05 Score=77.06 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHH----HHHcCCC--eE
Q 009946 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQF----ALERGIP--ST 264 (522)
Q Consensus 192 a~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~----A~~rg~~--~~ 264 (522)
.+.....+.+++......+...+.+-+||||.||.|......... .-...++...|.++..++. ++++|.. +.
T Consensus 112 IR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~ 191 (311)
T PF12147_consen 112 IRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIAR 191 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceE
Confidence 333333444444333223444567789999999999776665543 1112355556666666554 4455654 37
Q ss_pred EEEeCCCCCC-C--CCCCceEEEeccccccchhhh---HHHHHHHHHhCCCCeEEEEEeCCCCCCChh---------H--
Q 009946 265 LGVLGTKRLP-Y--PSRSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEAYAHDPE---------N-- 327 (522)
Q Consensus 265 ~~~~d~~~lp-f--~d~sFDlVv~s~~~l~~~~d~---~~~L~ei~RvLkPGG~lvis~P~~~~~~~e---------~-- 327 (522)
|...|+.+.. + -+-..++++.|. +++.++|. ...|..+.+++.|||+++.+.-+.-...+. .
T Consensus 192 f~~~dAfd~~~l~~l~p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~ 270 (311)
T PF12147_consen 192 FEQGDAFDRDSLAALDPAPTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGK 270 (311)
T ss_pred EEecCCCCHhHhhccCCCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCC
Confidence 8888754321 1 123469999888 68888774 457899999999999999988443211110 0
Q ss_pred -----HHHHHHHHHHHHhcCcEEEEEe
Q 009946 328 -----RRIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 328 -----~~~~~~l~~l~~~~g~~~v~~~ 349 (522)
.+...++.++++.+||+.....
T Consensus 271 ~WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 271 AWVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred ceEEEecCHHHHHHHHHHcCCchhhhe
Confidence 0113489999999999866543
No 163
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.97 E-value=5.3e-05 Score=73.61 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=75.3
Q ss_pred CCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHH
Q 009946 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQF 255 (522)
Q Consensus 176 g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~ 255 (522)
|-.+..|.+. .+....+...+.+.+.+... ....+|||+|||+|.++..++.+. +..+...|.++..++.
T Consensus 22 g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~-------~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~ 91 (199)
T PRK10909 22 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-------IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQ 91 (199)
T ss_pred CCEeCCCCCC-CcCcCCHHHHHHHHHHHhhh-------cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHH
Confidence 3444444322 33555666666666655321 123589999999999998654331 1234444555555554
Q ss_pred HHHc----CC-CeEEEEeCCCC-CCCCCCCceEEEeccccccchhh-hHHHHHHHHH--hCCCCeEEEEEeCC
Q 009946 256 ALER----GI-PSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 319 (522)
Q Consensus 256 A~~r----g~-~~~~~~~d~~~-lpf~d~sFDlVv~s~~~l~~~~d-~~~~L~ei~R--vLkPGG~lvis~P~ 319 (522)
+++. +. ++.+...|... ++...++||+|++.-- |... ...++..+.. +|+|+|.+++..+.
T Consensus 92 a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 92 LIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 4432 33 46777777543 3223457999997642 2222 2345555554 48999999987654
No 164
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.96 E-value=5.4e-05 Score=64.75 Aligned_cols=97 Identities=30% Similarity=0.416 Sum_probs=65.1
Q ss_pred EEEECCCCchHH--HHHhhCCCcccccCcccccHHHHHHHHHcC--C--C-eEEEEeCCCC--CCCCC-CCceEEEeccc
Q 009946 219 VLDVGCGVASFG--AYLLSHDIIAMSLAPNDVHENQIQFALERG--I--P-STLGVLGTKR--LPYPS-RSFELAHCSRC 288 (522)
Q Consensus 219 VLDIGCGtG~~a--~~La~~~v~gvdis~~Dis~a~i~~A~~rg--~--~-~~~~~~d~~~--lpf~d-~sFDlVv~s~~ 288 (522)
++|+|||+|... ..+.... ..+.+.|.+..++..+.... . . +.+...+... +++.. ..||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999854 3333221 12223466666655544332 1 1 4566666655 78876 489999 6665
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
..++.. ....+.++.++|+|+|.+++.....
T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 555555 7789999999999999999987654
No 165
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.95 E-value=4.2e-05 Score=84.34 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCchHHHHHhhC----CCcccccCcccccHHHHHHHHHcCC-CeEEEEeCCCCCC--CCCCCceEEEecc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~v~gvdis~~Dis~a~i~~A~~rg~-~~~~~~~d~~~lp--f~d~sFDlVv~s~ 287 (522)
....+||||||.|.+...++.. ++.|+++...-+..+. ..+.+.++ ++.+...++..+. ++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3567999999999999999864 6677777654443333 33344454 4555555543222 6788999999766
Q ss_pred ccccchhhh--------HHHHHHHHHhCCCCeEEEEEe
Q 009946 288 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~--------~~~L~ei~RvLkPGG~lvis~ 317 (522)
. -.|.... ..+|..+.++|||||.+.+.+
T Consensus 426 P-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 P-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 3 5554321 569999999999999999966
No 166
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.93 E-value=5.6e-05 Score=76.60 Aligned_cols=133 Identities=16% Similarity=0.259 Sum_probs=83.1
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCc----hHHHHHhhCCC----cccccCcccccHHHHHH
Q 009946 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLSHDI----IAMSLAPNDVHENQIQF 255 (522)
Q Consensus 184 g~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG----~~a~~La~~~v----~gvdis~~Dis~a~i~~ 255 (522)
.-|.|.+...++...-...++..... . ..+.-+|.-+||+|| +++..|.+... ..+.|.+.|++...++.
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~-~-~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~ 144 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKR-K-KGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK 144 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhh-c-cCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence 34555566655554433333311000 0 114678999999999 45555555432 35788888999999888
Q ss_pred HHHc---------CCC-------------------------eEEEEeCCCCCCCCCCCceEEEeccccccchhhh--HHH
Q 009946 256 ALER---------GIP-------------------------STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GIL 299 (522)
Q Consensus 256 A~~r---------g~~-------------------------~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~--~~~ 299 (522)
|+.. +++ +.|...++..-++..+.||+|+|.+. +-|+... ..+
T Consensus 145 A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV-LIYFd~~~q~~i 223 (268)
T COG1352 145 ARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV-LIYFDEETQERI 223 (268)
T ss_pred HhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcce-EEeeCHHHHHHH
Confidence 7642 111 23444443333323467999999995 4454333 679
Q ss_pred HHHHHHhCCCCeEEEEEeCC
Q 009946 300 LLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 300 L~ei~RvLkPGG~lvis~P~ 319 (522)
+..++..|+|||+|++-...
T Consensus 224 l~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 224 LRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred HHHHHHHhCCCCEEEEccCc
Confidence 99999999999999996543
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.93 E-value=2.1e-05 Score=74.59 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=57.9
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH----cC----CCeEEEEeCCCC-C--C-CCCCCce
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RG----IPSTLGVLGTKR-L--P-YPSRSFE 281 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~----rg----~~~~~~~~d~~~-l--p-f~d~sFD 281 (522)
....+|||+|||+|..+..++... .+.++...|..+ .++..+. .+ .++.+...+-.+ . . ...+.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 345789999999998887776551 122333344444 3332222 12 234555444222 1 1 2346899
Q ss_pred EEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 282 lVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
+|+++.+ +......+.++.-+.++|+|+|.++++.+.
T Consensus 122 ~IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 122 VILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9999985 666666688999999999999998887754
No 168
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.93 E-value=2e-05 Score=77.24 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=83.0
Q ss_pred CCCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHc----C---CCeEEEEeCCCCC--CCCCCCce
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----G---IPSTLGVLGTKRL--PYPSRSFE 281 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~r----g---~~~~~~~~d~~~l--pf~d~sFD 281 (522)
..+.+|||...|-|.++..-+++ .|..++.++. .++.|.-+ + ..+.++.+|+.++ .|+|.+||
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~-----VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN-----VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC-----eEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 34678999999999999888776 3344444333 33333221 1 2357777775443 37889999
Q ss_pred EEEeccccccchhh--hHHHHHHHHHhCCCCeEEEEEe--CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 282 LAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS--PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 282 lVv~s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvis~--P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
+|+----.+..... -+++.+|++|+|||||.++=.+ |....+.. .....+.+.+++.||.++....
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~---d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL---DLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC---ChhHHHHHHHHhcCceeeeeeh
Confidence 99853222322222 2679999999999999998543 33222222 2345677888999999776543
No 169
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=7.2e-05 Score=73.81 Aligned_cols=97 Identities=22% Similarity=0.380 Sum_probs=60.9
Q ss_pred CCCeEEEECCCCchHHHHHhhC----CCcccccCcccccHHHHHHHHHcCC---C----eE-------------------
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI---P----ST------------------- 264 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~v~gvdis~~Dis~a~i~~A~~rg~---~----~~------------------- 264 (522)
.+..+|||||-.|.++..++.. .+.|+ |+.+..++.|++... . +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGv-----DID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGV-----DIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEe-----eccHHHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3467999999999999999864 55566 555566666665410 0 00
Q ss_pred --------------EE----EeC-CCCCCCCCCCceEEEecc----ccccchhh-hHHHHHHHHHhCCCCeEEEEE
Q 009946 265 --------------LG----VLG-TKRLPYPSRSFELAHCSR----CRIDWLQR-DGILLLELDRLLRPGGYFVYS 316 (522)
Q Consensus 265 --------------~~----~~d-~~~lpf~d~sFDlVv~s~----~~l~~~~d-~~~~L~ei~RvLkPGG~lvis 316 (522)
+. +.+ .+-+.+....||+|+|.. ..+.|..+ ...+++.+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 000 001123345799999843 12333333 367999999999999999984
No 170
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.87 E-value=5.1e-05 Score=74.08 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH----cCC--CeEEEEeCCCC-CC-----CCCCCceEE
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RGI--PSTLGVLGTKR-LP-----YPSRSFELA 283 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~----rg~--~~~~~~~d~~~-lp-----f~d~sFDlV 283 (522)
+++||||||++|..+..|+..-.....+...+.++...+.|++ .|. .+.+..+++.+ ++ .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 4789999999999999998641112233334555555555543 243 57788877533 22 123589999
Q ss_pred EeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 284 v~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+.-. .-.+...++..+.++|+|||.+++..
T Consensus 126 FiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 126 FIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 9433 23445678888899999999999865
No 171
>PLN02476 O-methyltransferase
Probab=97.86 E-value=8.7e-05 Score=75.59 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=63.4
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH----cCC--CeEEEEeCCCC-CC-C----CCCCceEE
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RGI--PSTLGVLGTKR-LP-Y----PSRSFELA 283 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~----rg~--~~~~~~~d~~~-lp-f----~d~sFDlV 283 (522)
+++|||||+|+|..+..++..--....+...|.++...+.|++ .|. .+.+..+++.+ ++ + .+++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 5789999999999999988631001113333444444455443 344 47777777533 22 1 13689999
Q ss_pred EeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 284 v~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+.-. .-.+...++..+.++|+|||.+++-.
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 9433 23445678999999999999988743
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.82 E-value=8.8e-05 Score=72.95 Aligned_cols=99 Identities=20% Similarity=0.202 Sum_probs=66.3
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEE-eCC-CCCC-CCCCCceEEEe
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGV-LGT-KRLP-YPSRSFELAHC 285 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~-~d~-~~lp-f~d~sFDlVv~ 285 (522)
++++|||||.+.|..+..|+..--.-..++..|..+.+.+.|++. |. .+.+.. +|. +.+. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 357899999999999999986411011344456666666766654 33 244555 342 2222 34689999983
Q ss_pred ccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
- +.-.+...++..+.++|||||.+++..
T Consensus 139 D----adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 139 D----ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred e----CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 2 234555789999999999999999754
No 173
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.78 E-value=3.1e-05 Score=81.66 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=75.2
Q ss_pred CeEEEECCCCchHHHHHhh---CCCcccccCcccccHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~---~~v~gvdis~~Dis~a~i~~A~~r-g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
..++|+|||.|....++.. .++++++.+............... .....+...+....||++++||.+.+.. +..|
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld-~~~~ 190 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE-VVCH 190 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe-eccc
Confidence 3699999999988888764 356666666554444443222221 1123456677889999999999999887 6889
Q ss_pred hhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 293 LQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.++...++.|++|+++|||+++...
T Consensus 191 ~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 191 APDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred CCcHHHHHHHHhcccCCCceEEeHH
Confidence 9999999999999999999999743
No 174
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.69 E-value=0.00026 Score=66.40 Aligned_cols=102 Identities=16% Similarity=0.051 Sum_probs=81.5
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC-----CCCCCceEEEeccccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCRI 290 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp-----f~d~sFDlVv~s~~~l 290 (522)
+.-|||+|.|||.++..++.+.+---++...+.+......-.++...+.++.+|+..+. +.+..||.|+|..-++
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll 128 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL 128 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccc
Confidence 35699999999999999999877777788888888888888888777888888876654 5567899999876444
Q ss_pred cchhhh-HHHHHHHHHhCCCCeEEEEEe
Q 009946 291 DWLQRD-GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 291 ~~~~d~-~~~L~ei~RvLkPGG~lvis~ 317 (522)
.+.... -++|+++...|++||.++-.+
T Consensus 129 ~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 129 NFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 443333 468999999999999998644
No 175
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.68 E-value=0.00019 Score=76.22 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=71.4
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCC-CCCCceEEEeccccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRI 290 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf-~d~sFDlVv~s~~~l 290 (522)
.+|||+|||+|.++..++.+ +..+.+.|+++.+++.|++. +. ++.+..+|+.++.. ..++||+|++.--
T Consensus 235 ~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP-- 309 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP-- 309 (374)
T ss_pred CEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC--
Confidence 57999999999999999865 22344445555555555433 43 57888888654321 1246999986542
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
+..-...++..+. .++|++.++++..+. ..-+.+..+ .||++.+.+..
T Consensus 310 -r~G~~~~~l~~l~-~~~p~~ivyvsc~p~--------TlaRDl~~L---~gy~l~~~~~~ 357 (374)
T TIGR02085 310 -RRGIGKELCDYLS-QMAPKFILYSSCNAQ--------TMAKDIAEL---SGYQIERVQLF 357 (374)
T ss_pred -CCCCcHHHHHHHH-hcCCCeEEEEEeCHH--------HHHHHHHHh---cCceEEEEEEe
Confidence 1111234555554 479999999876332 112234444 58888765543
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.68 E-value=0.00011 Score=74.72 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=51.9
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg--~~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
..+|||||||+|.++..|+++. ..+.+.|+++.+++.++++. .++.+..+|+..+++++-.+|.|+++.
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 3679999999999999999862 25566677778888777653 468889999888887643358887553
No 177
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=2.7e-05 Score=78.48 Aligned_cols=98 Identities=26% Similarity=0.238 Sum_probs=72.2
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhh
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d 295 (522)
...+||+|||.|-.+..- ..+-+.+.|++...+..++..+.. .....|+..+|+++.+||.+++.. ++||...
T Consensus 46 gsv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLST 118 (293)
T ss_pred cceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhh
Confidence 456999999999543221 122344557777777777666543 566788999999999999999665 6777654
Q ss_pred h---HHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 296 D---GILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 296 ~---~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
. ..+++|+.|+|||||...+.....
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 3 569999999999999988876443
No 178
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00046 Score=69.36 Aligned_cols=122 Identities=18% Similarity=0.220 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCC--eE
Q 009946 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP--ST 264 (522)
Q Consensus 191 ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~--~~ 264 (522)
..+.+.+.+.+.+..... .....+||+|||+|.++..|+.. .--..+.++|.+++++..|.++ +.. +.
T Consensus 129 ETEE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred cHHHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 446677776666653321 22347999999999999888753 1133445557777777776554 222 22
Q ss_pred EEEe----C-CCCCCCCCCCceEEEeccccccch-------------------------hhhHHHHHHHHHhCCCCeEEE
Q 009946 265 LGVL----G-TKRLPYPSRSFELAHCSRCRIDWL-------------------------QRDGILLLELDRLLRPGGYFV 314 (522)
Q Consensus 265 ~~~~----d-~~~lpf~d~sFDlVv~s~~~l~~~-------------------------~d~~~~L~ei~RvLkPGG~lv 314 (522)
+... + ....+..++.+|+++|+---+... .....++.-+.|.|+|||.+.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 2222 1 233445578999999853211110 111236667789999999999
Q ss_pred EEeC
Q 009946 315 YSSP 318 (522)
Q Consensus 315 is~P 318 (522)
+..-
T Consensus 283 le~~ 286 (328)
T KOG2904|consen 283 LELV 286 (328)
T ss_pred EEec
Confidence 9764
No 179
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.67 E-value=0.00016 Score=72.91 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=52.0
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc---CCCeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---g~~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
..+|||||||+|.++..|+++ +..+.+.|+++.+++.++++ ..++.+..+|+..++++ .||.|+++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcC
Confidence 467999999999999999986 23556667777787777665 23578888998888776 489999764
No 180
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.63 E-value=4.9e-05 Score=78.66 Aligned_cols=97 Identities=16% Similarity=0.291 Sum_probs=64.2
Q ss_pred CCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHcCCC--eEEEEeCCCCCCCCCCCceEEEecccc-
Q 009946 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR- 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~rg~~--~~~~~~d~~~lpf~d~sFDlVv~s~~~- 289 (522)
.++|||||||+|.++..-+++ .|.+++.+. +..-..+.++..+.. +.+..+.++++.+|..+.|+|++-...
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 478999999999888877654 566665543 334444555555553 456666677666666789999974310
Q ss_pred -ccchhhhHHHHHHHHHhCCCCeEEE
Q 009946 290 -IDWLQRDGILLLELDRLLRPGGYFV 314 (522)
Q Consensus 290 -l~~~~d~~~~L~ei~RvLkPGG~lv 314 (522)
+-+..-.+.+|-.=.+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1111123556777789999999987
No 181
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00047 Score=66.89 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=64.2
Q ss_pred CCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHc---------------CCCeEEEEeCCCCCCCCCCC
Q 009946 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKRLPYPSRS 279 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~r---------------g~~~~~~~~d~~~lpf~d~s 279 (522)
+.+.||+|.|+|.++..++.- .-.+.+..+++..+..++.+++. ..+..++++|....--+...
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~ 162 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP 162 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence 356999999999888776621 11233334445556666655443 12456778887777667788
Q ss_pred ceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 280 FDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
||.|||..++ ....+++-..|++||.+++-.
T Consensus 163 YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 163 YDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 9999987532 246677888899999999843
No 182
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.54 E-value=0.0003 Score=70.60 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=61.5
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCC-CCC------CCCCceE
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKR-LPY------PSRSFEL 282 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~-lpf------~d~sFDl 282 (522)
+++|||||+++|..+..|+...-....+...+..+...+.|++. | ..+.+..+++.+ ++- ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 47899999999999988875411112233334444444555433 4 356777776433 221 1368999
Q ss_pred EEeccccccchhhhHHHHHHHHHhCCCCeEEEEE
Q 009946 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (522)
Q Consensus 283 Vv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis 316 (522)
|+.-. .-.....++..+.++|+|||.+++-
T Consensus 160 iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 160 IFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99433 2334456788888999999998874
No 183
>PLN02823 spermine synthase
Probab=97.52 E-value=0.0013 Score=69.04 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---------CCeEEEEeCCCC-CCCCCCCceEEE
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---------IPSTLGVLGTKR-LPYPSRSFELAH 284 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---------~~~~~~~~d~~~-lpf~d~sFDlVv 284 (522)
.+++||.||+|.|..+..+++... ...++..|+.+..++.|++.. .++.+...|... +...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 457899999999999998877421 124555677888888887652 356777777443 233357899999
Q ss_pred eccccccch------hhhHHHHH-HHHHhCCCCeEEEEEe
Q 009946 285 CSRCRIDWL------QRDGILLL-ELDRLLRPGGYFVYSS 317 (522)
Q Consensus 285 ~s~~~l~~~------~d~~~~L~-ei~RvLkPGG~lvis~ 317 (522)
+-. .-... .-..++++ .+.+.|+|||.+++-.
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 642 11110 11245787 8999999999988754
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.50 E-value=0.00014 Score=79.03 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=57.0
Q ss_pred CCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHH----HHc--CCCeEEEEeCCCCCCCCCCCceEEEec
Q 009946 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFA----LER--GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A----~~r--g~~~~~~~~d~~~lpf~d~sFDlVv~s 286 (522)
...|||||||+|.+....+++ ...+..+.+++-++.+.... +.. +..+.++..|++++..+ ...|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 467999999999887555432 11123333333333322221 233 35689999999999877 479999963
Q ss_pred cccccch---hhhHHHHHHHHHhCCCCeEEE
Q 009946 287 RCRIDWL---QRDGILLLELDRLLRPGGYFV 314 (522)
Q Consensus 287 ~~~l~~~---~d~~~~L~ei~RvLkPGG~lv 314 (522)
. +... +-..+.|....|.|||||.++
T Consensus 266 l--LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 L--LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred c--cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2 2221 122457899999999999887
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.50 E-value=0.0007 Score=64.60 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=71.7
Q ss_pred CCeEEEECCCCchHHHHHh--hCCCc------ccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCCCCCCCCCce
Q 009946 216 IRNVLDVGCGVASFGAYLL--SHDII------AMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFE 281 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~v~------gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~lpf~d~sFD 281 (522)
...+||--||+|++....+ ...+. ...+.+.|+++.+++.|++. +. .+.+...|+.++++.++++|
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 4679999999999886544 22333 11133556666666655543 33 36788889999998788999
Q ss_pred EEEeccc---cccchhhh----HHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 282 LAHCSRC---RIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 282 lVv~s~~---~l~~~~d~----~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
.|++..- .+.-..+. ..++.++.|+|++...++++. .. .+++.+...+|+......
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~-~~------------~~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS-NR------------ELEKALGLKGWRKRKLYN 171 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES-CC------------CHHHHHTSTTSEEEEEEE
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-CH------------HHHHHhcchhhceEEEEE
Confidence 9998521 01111111 457899999999944444432 21 255667777877765543
No 186
>PRK04148 hypothetical protein; Provisional
Probab=97.49 E-value=0.00058 Score=62.18 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=58.4
Q ss_pred CCeEEEECCCCch-HHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCC-CCCceEEEeccccccch
Q 009946 216 IRNVLDVGCGVAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWL 293 (522)
Q Consensus 216 ~~~VLDIGCGtG~-~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~-d~sFDlVv~s~~~l~~~ 293 (522)
..+|||||||+|. ++..|++. +.++.+.|+++..++.+++.+. .+...|..+-.+. -+.+|+|.+.+. .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4789999999995 88888875 5677777888888888888764 4555565444322 246999997763 3
Q ss_pred hhhHHHHHHHHHhCC
Q 009946 294 QRDGILLLELDRLLR 308 (522)
Q Consensus 294 ~d~~~~L~ei~RvLk 308 (522)
++....+.++.+-+.
T Consensus 88 ~el~~~~~~la~~~~ 102 (134)
T PRK04148 88 RDLQPFILELAKKIN 102 (134)
T ss_pred HHHHHHHHHHHHHcC
Confidence 344455666665543
No 187
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0001 Score=68.57 Aligned_cols=136 Identities=15% Similarity=0.261 Sum_probs=82.4
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHH---HcCC-----CeEEEEeC--CCCCCCCCCCceEEEe
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL---ERGI-----PSTLGVLG--TKRLPYPSRSFELAHC 285 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~---~rg~-----~~~~~~~d--~~~lpf~d~sFDlVv~ 285 (522)
+++||++|.|--.++..|....+...++-..|-.+..++..+ .++. .+...... ..+...+.++||+|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 477999999965555444433233333333344444443332 2221 11111111 1112233468999999
Q ss_pred ccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc-eEEEeccC
Q 009946 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ-TVIWAKPI 359 (522)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~-~~iw~Kp~ 359 (522)
+.|++ +.+.-+.++..|.+.|+|.|..++..|.-- ...+.+.+.+...||.+...++. .+|||+-.
T Consensus 110 ADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg-------~sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 110 ADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRG-------QSLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred ccchh-HHHHHHHHHHHHHHHhCcccceeEecCccc-------chHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 99844 455557799999999999999988877531 22567778889999988876663 56777543
No 188
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.33 E-value=0.0016 Score=62.64 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=71.3
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHH----HHHcCCC-eEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQF----ALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~----A~~rg~~-~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
+++|||+|.|.=+..|+=.. ...+++..|.....+.+ +++.+.. +.+....+++ +....+||+|++.. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA--v-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA--V-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES--S--
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh--h--
Confidence 79999999996665554210 01223334444444443 3344654 7777777777 44557899999543 2
Q ss_pred hhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q 009946 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~ 349 (522)
.....++.-+...|++||.+++.--. ....+.++.+...+..+++.....
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~KG~------~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYKGP------DAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEESS--------HHHHHTHHHHHHCCCEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEcCC------ChHHHHHHHHhHHHHhCCEEeeec
Confidence 34567888899999999999874321 122334455666677777666543
No 189
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.33 E-value=0.0013 Score=65.87 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=48.7
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc---CCCeEEEEeCCCCCCCCCCCce---EEEec
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFE---LAHCS 286 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---g~~~~~~~~d~~~lpf~d~sFD---lVv~s 286 (522)
..+|||||||+|.++..|+++. -.+.+.|.++.+++.++++ ..++.+...|+..++++ +|| +|+++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 4789999999999999998762 2355556677777777655 24678888898888875 466 66644
No 190
>PRK00536 speE spermidine synthase; Provisional
Probab=97.29 E-value=0.0023 Score=64.72 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=67.6
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc---------CCCeEEEEeCCCCCCCCCCCceEEE
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFELAH 284 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---------g~~~~~~~~d~~~lpf~d~sFDlVv 284 (522)
+++++||=||.|.|..++.++++. . .++-.|+.+..++.+++. .+++.+... ..+ -..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-T--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-C--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEE
Confidence 457899999999999999999874 1 555567778888888874 233444431 111 1236899999
Q ss_pred eccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
+-. . ....+.+.++|.|+|||.++......
T Consensus 145 vDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 145 CLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred EcC-C-----CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 542 1 33568899999999999999865443
No 191
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00043 Score=66.20 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCchHHHH--Hhh-CCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccc---
Q 009946 215 NIRNVLDVGCGVASFGAY--LLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC--- 288 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~--La~-~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~--- 288 (522)
..++|+|+|||||.++.. ++. +.|+++|+++..+ +...+.+.+.+..+.+.+.|+.++. ..||.++++--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 346799999999976654 444 4788887776433 3444445555667899999988876 45898887531
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~ 349 (522)
...| .| ..+|....++- ..+.+.-..- ..+-+++.++..|+.+....
T Consensus 121 ~~rh-aD-r~Fl~~Ale~s----~vVYsiH~a~--------~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 121 QRRH-AD-RPFLLKALEIS----DVVYSIHKAG--------SRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred cccc-CC-HHHHHHHHHhh----heEEEeeccc--------cHHHHHHHHHhcCCeEEEEE
Confidence 1222 22 33555555543 3444432221 13346677888998776543
No 192
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.26 E-value=0.00051 Score=66.85 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=75.2
Q ss_pred cceecCCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhh--C--CCcccccCcc
Q 009946 171 WMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPN 246 (522)
Q Consensus 171 W~~~~g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~--~v~gvdis~~ 246 (522)
..++.|-.+.+.-....|..+-..-...+.+.+. +..+|||+-||.|.|+..++. + .|.++|+.+.
T Consensus 67 ~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~----------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~ 136 (200)
T PF02475_consen 67 IHKENGIRFKVDLSKVYFSPRLSTERRRIANLVK----------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD 136 (200)
T ss_dssp EEEETTEEEEEETTTS---GGGHHHHHHHHTC------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH
T ss_pred EEEeCCEEEEEccceEEEccccHHHHHHHHhcCC----------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH
Confidence 3456666777766777787776555555555432 347899999999999999986 2 4667777664
Q ss_pred cccHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEE
Q 009946 247 DVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314 (522)
Q Consensus 247 Dis~a~i~~A~~rg~--~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lv 314 (522)
.+ +.+.+.++..+. .+....+|...+.. .+.||-|++.. .+ ....+|..+.+++++||.+-
T Consensus 137 a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 137 AV-EYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HH-HHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE----TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred HH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--hH---HHHHHHHHHHHHhcCCcEEE
Confidence 43 233333333343 35677888777765 68899999654 22 22358888999999999874
No 193
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.22 E-value=0.0015 Score=67.99 Aligned_cols=96 Identities=20% Similarity=0.184 Sum_probs=65.0
Q ss_pred CCCeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHcCCCeEEEEeC-CCCCCCCCCCceEEEecccccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 291 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d-~~~lpf~d~sFDlVv~s~~~l~ 291 (522)
.....+|+|.|.|..+..+... .+.+++++...+ ++.|......+..+-+| .++.|- -|+|++-.+..|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v----~~~a~~~~~gV~~v~gdmfq~~P~----~daI~mkWiLhd 248 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFV----LAAAPYLAPGVEHVAGDMFQDTPK----GDAIWMKWILHD 248 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHH----HhhhhhhcCCcceecccccccCCC----cCeEEEEeeccc
Confidence 3578999999999999998874 344444433222 22222222335555555 445442 369999997666
Q ss_pred chhhh-HHHHHHHHHhCCCCeEEEEEeC
Q 009946 292 WLQRD-GILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 292 ~~~d~-~~~L~ei~RvLkPGG~lvis~P 318 (522)
|..+. ..+|+++...|+|||.+++...
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 65433 6899999999999999999875
No 194
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.20 E-value=0.0017 Score=71.04 Aligned_cols=104 Identities=18% Similarity=0.289 Sum_probs=65.9
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCC-eEEEEeCCCCCC-CCCCCceEEE----
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP-STLGVLGTKRLP-YPSRSFELAH---- 284 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~-~~~~~~d~~~lp-f~d~sFDlVv---- 284 (522)
.+.+|||++||.|.=+.+|++.--..-.+...|++...++..+++ |.. +.+...|...+. ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 457899999999988888776410111355556666665554433 553 456666665543 2235799999
Q ss_pred eccc-cc--------cchhh--------hHHHHHHHHHhCCCCeEEEEEeC
Q 009946 285 CSRC-RI--------DWLQR--------DGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 285 ~s~~-~l--------~~~~d--------~~~~L~ei~RvLkPGG~lvis~P 318 (522)
||.. ++ .|.++ ..++|..+.+.|||||+++.++=
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 5531 11 11111 14589999999999999988773
No 195
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.16 E-value=0.0011 Score=68.14 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=47.8
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
..+|||||||+|.++..|++. +..+.+.|+++.+++.++++ + .++.+...|+...+++ .||.|+++.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNl 109 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANV 109 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecC
Confidence 367999999999999999875 22344456666666666543 2 3578888888776654 689988653
No 196
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0058 Score=62.53 Aligned_cols=106 Identities=14% Similarity=0.065 Sum_probs=71.1
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---------CCeEEEEeCCCCC-CCCCCCceEE
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---------IPSTLGVLGTKRL-PYPSRSFELA 283 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---------~~~~~~~~d~~~l-pf~d~sFDlV 283 (522)
+.+++||=||-|.|.++..++++.- .-.++-+++.++.++.+++.- .++.+...|...+ .-..++||+|
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 3447999999999999999987631 123444577788889888762 3456666664332 2122489999
Q ss_pred Eeccccccchh----hhHHHHHHHHHhCCCCeEEEEEeCCCC
Q 009946 284 HCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAY 321 (522)
Q Consensus 284 v~s~~~l~~~~----d~~~~L~ei~RvLkPGG~lvis~P~~~ 321 (522)
++-. .-.-.+ ....+++.++|.|+++|.++.-.-..+
T Consensus 154 i~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~ 194 (282)
T COG0421 154 IVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPF 194 (282)
T ss_pred EEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 9532 122011 126799999999999999998754443
No 197
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.06 E-value=0.0069 Score=61.72 Aligned_cols=128 Identities=20% Similarity=0.120 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHc---CCCeEEE--EeC--CCCCCCCCCCceEEEe
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---GIPSTLG--VLG--TKRLPYPSRSFELAHC 285 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~r---g~~~~~~--~~d--~~~lpf~d~sFDlVv~ 285 (522)
-.+++|||+|||+|..+....+. . ...++...|.++.+.+.++.. ....... ... ....++. ..|+|++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~ 108 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIA 108 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEE
Confidence 35678999999999755544432 1 234556678888888877654 1111100 011 1122332 3499999
Q ss_pred ccccccchhhh--HHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 286 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 286 s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
++. +.-+++. ..+++.+.+.+.+ +++|+.|.. +.......++++.+...|+.++.-...
T Consensus 109 s~~-L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt----~~Gf~~i~~aR~~l~~~~~~v~APCph 169 (274)
T PF09243_consen 109 SYV-LNELPSAARAELVRSLWNKTAP--VLVLVEPGT----PAGFRRIAEARDQLLEKGAHVVAPCPH 169 (274)
T ss_pred ehh-hhcCCchHHHHHHHHHHHhccC--cEEEEcCCC----hHHHHHHHHHHHHHhhCCCceECCCcc
Confidence 995 4444442 3466666666665 899988765 233344557777788888887765443
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.04 E-value=0.00089 Score=71.40 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=63.3
Q ss_pred CeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 217 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
.+|||++||+|.++..++.. . .-.+...|+++..++.+++. +. +..+...|+..+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG--VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP--- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC---
Confidence 57999999999999998753 2 12344445565555555432 33 34567777654322135699998543
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+ ..+..++..+.+.+++||.++++..
T Consensus 134 -~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 -F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred -C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2 2345688887888999999999864
No 199
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.03 E-value=0.0063 Score=58.57 Aligned_cols=99 Identities=15% Similarity=-0.033 Sum_probs=56.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCC-CC-C-CCC-CceEEEe
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKR-LP-Y-PSR-SFELAHC 285 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~-lp-f-~d~-sFDlVv~ 285 (522)
..++||++||+|.++..++.+.. -.+..+|.++..++.+++. +. ++.+...|+.+ +. + ... .||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 36799999999999999987621 1233334454444444332 33 45777777633 22 1 122 3788775
Q ss_pred ccccccchhhhHHHHHHHH--HhCCCCeEEEEEeC
Q 009946 286 SRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSP 318 (522)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~--RvLkPGG~lvis~P 318 (522)
--- ... .....++..+. .+|+++|.+++..+
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 321 111 11233444443 47899998888654
No 200
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0039 Score=63.86 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=55.4
Q ss_pred CCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCCh------h-HH-HHHHHHHHHHHhcCcEEEEEe
Q 009946 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP------E-NR-RIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~------e-~~-~~~~~l~~l~~~~g~~~v~~~ 349 (522)
++||+|+..+ .+.-..+.-++|..|..+|||||.++=..|-.|.... + .. -..+++..+++..||++++++
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699998765 4665666778999999999999999988885544322 1 11 246689999999999999888
Q ss_pred cc
Q 009946 350 DQ 351 (522)
Q Consensus 350 ~~ 351 (522)
..
T Consensus 337 ~I 338 (369)
T KOG2798|consen 337 GI 338 (369)
T ss_pred ee
Confidence 54
No 201
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.00065 Score=62.95 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=58.4
Q ss_pred eEEEEeCCCCCCCCCCCceEEEeccccccchhhh--HHHHHHHHHhCCCCeEEEEEeCCCCCC-----------------
Q 009946 263 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH----------------- 323 (522)
Q Consensus 263 ~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~~~~----------------- 323 (522)
+.+..-.....+|.+++.|+|.|.+ +++|.... ..++++++|+|||||++-++.|+....
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpnd 109 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPND 109 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCC
Confidence 3333334566789999999999988 57776433 568999999999999999999853211
Q ss_pred --ChhHHHHHHHHHHHHHhcCcEEE
Q 009946 324 --DPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 324 --~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
.....+.++.+...+.++||.+.
T Consensus 110 hP~~r~v~t~r~m~n~~m~~~~~~k 134 (185)
T COG4627 110 HPLHRIVKTMRMMFNGFMDAGFVVK 134 (185)
T ss_pred CcHHHHHHHHHHHHHHHHhhhheeh
Confidence 11122355677777888887543
No 202
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0077 Score=57.40 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=75.7
Q ss_pred CCeEEEECCCCchHHHHHhhCC-----CcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccc--
Q 009946 216 IRNVLDVGCGVASFGAYLLSHD-----IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~-----v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~-- 288 (522)
+.-+||||||+|..+..|++.. ..+.|+++... ++.++.|+.++..+..+..|...---+ ++.|+++.+.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~l~~-~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSGLRN-ESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhhhcc-CCccEEEECCCcC
Confidence 4679999999999998888652 23455555332 344455666666666666664332222 77888776421
Q ss_pred ------------cccch--hh----hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q 009946 289 ------------RIDWL--QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 289 ------------~l~~~--~d----~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
...|. .+ .+.++..+..+|.|.|.|++..-... .-.++.++++..||...
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------KPKEILKILEKKGYGVR 189 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------CHHHHHHHHhhccccee
Confidence 01121 11 24578888899999999998764321 12356667888888654
No 203
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.89 E-value=0.0099 Score=58.46 Aligned_cols=143 Identities=14% Similarity=0.133 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHhcCCCcccCCCCC-CCeEEEECCCCchHHHHHh--hCCCcccccCcccccHHHHHH----HHHcCCC-
Q 009946 191 GADKYILALARMLKFPSDKLNNGGN-IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQF----ALERGIP- 262 (522)
Q Consensus 191 ga~~y~~~l~~lL~~~~~~l~~~~~-~~~VLDIGCGtG~~a~~La--~~~v~gvdis~~Dis~a~i~~----A~~rg~~- 262 (522)
..+-|.+.+.+.+..... ... ..+++|||+|.|.=+..|+ ... ..++..|.....+.+ +.+.+.+
T Consensus 46 ~~e~~~rHilDSl~~~~~----~~~~~~~~~DIGSGaGfPGipLAI~~p~---~~vtLles~~Kk~~FL~~~~~eL~L~n 118 (215)
T COG0357 46 PEELWQRHILDSLVLLPY----LDGKAKRVLDIGSGAGFPGIPLAIAFPD---LKVTLLESLGKKIAFLREVKKELGLEN 118 (215)
T ss_pred HHHHHHHHHHHHhhhhhc----ccccCCEEEEeCCCCCCchhhHHHhccC---CcEEEEccCchHHHHHHHHHHHhCCCC
Confidence 334455566655543321 111 4789999999997666655 211 113333433333333 3344665
Q ss_pred eEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcC
Q 009946 263 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (522)
Q Consensus 263 ~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g 342 (522)
+.++..-++++.-...-||+|+|.. + .+...++.-....||+||.++.. +.......+.+.+......+
T Consensus 119 v~i~~~RaE~~~~~~~~~D~vtsRA--v---a~L~~l~e~~~pllk~~g~~~~~------k~~~~~~e~~e~~~a~~~~~ 187 (215)
T COG0357 119 VEIVHGRAEEFGQEKKQYDVVTSRA--V---ASLNVLLELCLPLLKVGGGFLAY------KGLAGKDELPEAEKAILPLG 187 (215)
T ss_pred eEEehhhHhhcccccccCcEEEeeh--c---cchHHHHHHHHHhcccCCcchhh------hHHhhhhhHHHHHHHHHhhc
Confidence 8888887888763211299998543 2 34556778888999999988641 22233345667888888888
Q ss_pred cEEEEEecc
Q 009946 343 WKIVSKKDQ 351 (522)
Q Consensus 343 ~~~v~~~~~ 351 (522)
+.+......
T Consensus 188 ~~~~~~~~~ 196 (215)
T COG0357 188 GQVEKVFSL 196 (215)
T ss_pred CcEEEEEEe
Confidence 887765543
No 204
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.0043 Score=61.13 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=64.0
Q ss_pred CCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHcCC--CeEEEEeCCC-CCC-----CCCCCceE
Q 009946 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTK-RLP-----YPSRSFEL 282 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~rg~--~~~~~~~d~~-~lp-----f~d~sFDl 282 (522)
++++||||.=||..+..++.. .++++|+......-. .+..+..|. .+.+.++.+. .++ .+.++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 478999998888666665532 577777765443322 233333343 3556665532 221 35689999
Q ss_pred EEeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 283 Vv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
++ +-+|-.+...+..++-++||+||.+++--
T Consensus 153 aF----vDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AF----VDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----EccchHHHHHHHHHHHhhcccccEEEEec
Confidence 98 34455666689999999999999999743
No 205
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.86 E-value=0.011 Score=63.27 Aligned_cols=124 Identities=18% Similarity=0.106 Sum_probs=76.9
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC---CeEEEEeCCCC-CC---CCCCCceEEE
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI---PSTLGVLGTKR-LP---YPSRSFELAH 284 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~---~~~~~~~d~~~-lp---f~d~sFDlVv 284 (522)
+++|||+=|=||.|+.+.+... +-+++.+|.|...++.|+++ |. +..++++|+-. +. -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 5789999999999998887541 11444446666666666654 33 35788877432 22 2234899999
Q ss_pred eccc--------cccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q 009946 285 CSRC--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (522)
Q Consensus 285 ~s~~--------~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~ 344 (522)
.--- ...-..+...++..+.++|+|||.+++++........ ...+.+.+.+...+..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~---~f~~~i~~a~~~~~~~ 360 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSD---LFLEIIARAAAAAGRR 360 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHH---HHHHHHHHHHHhcCCc
Confidence 7211 1111234467999999999999999998854432222 1223444445555443
No 206
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.014 Score=58.99 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHc------CCCeE
Q 009946 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER------GIPST 264 (522)
Q Consensus 196 ~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~r------g~~~~ 264 (522)
+..|..+|.... +.+||+-|.|+|+++.+++.. .+... |+++...+.|++. +.++.
T Consensus 94 ia~I~~~L~i~P--------GsvV~EsGTGSGSlShaiaraV~ptGhl~tf-----efH~~Ra~ka~eeFr~hgi~~~vt 160 (314)
T KOG2915|consen 94 IAMILSMLEIRP--------GSVVLESGTGSGSLSHAIARAVAPTGHLYTF-----EFHETRAEKALEEFREHGIGDNVT 160 (314)
T ss_pred HHHHHHHhcCCC--------CCEEEecCCCcchHHHHHHHhhCcCcceEEE-----EecHHHHHHHHHHHHHhCCCcceE
Confidence 446777777543 478999999999999999865 33344 4455555555433 44678
Q ss_pred EEEeCCCCCCCC--CCCceEEEeccccccchhhhHHHHHHHHHhCCCCe-EEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 009946 265 LGVLGTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (522)
Q Consensus 265 ~~~~d~~~lpf~--d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~~~ 341 (522)
+.+-|....-|. +..+|.|+.- ++.+-.++--++.+||.+| +|+-..|.. +..+.-.+++.+.
T Consensus 161 ~~hrDVc~~GF~~ks~~aDaVFLD------lPaPw~AiPha~~~lk~~g~r~csFSPCI--------EQvqrtce~l~~~ 226 (314)
T KOG2915|consen 161 VTHRDVCGSGFLIKSLKADAVFLD------LPAPWEAIPHAAKILKDEGGRLCSFSPCI--------EQVQRTCEALRSL 226 (314)
T ss_pred EEEeecccCCccccccccceEEEc------CCChhhhhhhhHHHhhhcCceEEeccHHH--------HHHHHHHHHHHhC
Confidence 888887776654 5679988732 3556667888888999877 666544442 2334556677888
Q ss_pred CcEEEE
Q 009946 342 CWKIVS 347 (522)
Q Consensus 342 g~~~v~ 347 (522)
||.-++
T Consensus 227 gf~~i~ 232 (314)
T KOG2915|consen 227 GFIEIE 232 (314)
T ss_pred CCceEE
Confidence 996554
No 207
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.80 E-value=0.0043 Score=65.71 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=66.3
Q ss_pred CeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCC-C-CC-----------
Q 009946 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRL-P-YP----------- 276 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~l-p-f~----------- 276 (522)
.++||++||+|.++..|+.. .|+++ |.++.+++.|+++ +. ++.+...|+.++ + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~v-----E~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLAT-----EISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGI 282 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEE-----ECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccc
Confidence 46999999999999988864 34555 5555555555433 44 577888886442 1 10
Q ss_pred ---CCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 277 ---SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 277 ---d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
...||+|+.---. ..-...++..+. +|++.++++..+. ..-+.+..+. + ||++.+.+..
T Consensus 283 ~~~~~~~D~v~lDPPR---~G~~~~~l~~l~---~~~~ivyvSC~p~--------tlarDl~~L~-~-gY~l~~v~~~ 344 (362)
T PRK05031 283 DLKSYNFSTIFVDPPR---AGLDDETLKLVQ---AYERILYISCNPE--------TLCENLETLS-Q-THKVERFALF 344 (362)
T ss_pred cccCCCCCEEEECCCC---CCCcHHHHHHHH---ccCCEEEEEeCHH--------HHHHHHHHHc-C-CcEEEEEEEc
Confidence 1258999853321 111133444444 3788888876331 1122344444 3 8888765543
No 208
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.80 E-value=0.0009 Score=67.43 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=51.2
Q ss_pred EEEeCCCCC-CCCC-----CCceEEEeccccccch-hhh---HHHHHHHHHhCCCCeEEEEEeCC---CCCCCh----hH
Q 009946 265 LGVLGTKRL-PYPS-----RSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSSPE---AYAHDP----EN 327 (522)
Q Consensus 265 ~~~~d~~~l-pf~d-----~sFDlVv~s~~~l~~~-~d~---~~~L~ei~RvLkPGG~lvis~P~---~~~~~~----e~ 327 (522)
+...|.... |+.. ..||+|+++.| ++.. ++. ..+++++.++|||||.|++..-- .|.-.. -.
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fc-LE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l 216 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFC-LESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCL 216 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESS-HHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE--
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHH-HHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccc
Confidence 455664433 3332 35999999886 4443 333 56899999999999999987631 110000 00
Q ss_pred HHHHHHHHHHHHhcCcEEEEEe
Q 009946 328 RRIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 328 ~~~~~~l~~l~~~~g~~~v~~~ 349 (522)
.-.-+.+++.++++||.+...+
T Consensus 217 ~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 217 PLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -B-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCEEEecc
Confidence 0112367888899999888766
No 209
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.73 E-value=0.015 Score=60.83 Aligned_cols=120 Identities=11% Similarity=0.075 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
.+..++|||||++|.++..|.++. +.+.++|..+ + .-......++.....+..+...+.+.+|.++|-. .
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l-~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm--v--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-M-AQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDM--V--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-c-CHhhhCCCCEEEEeccCcccCCCCCCCCEEEEec--c---
Confidence 456789999999999999999873 3344444321 1 1111224567777666544432357899999754 2
Q ss_pred hhhHHHHHHHHHhCCCC--eEEEEEeCCCC-CCChhHHHHHHHHHHHHHhcCc
Q 009946 294 QRDGILLLELDRLLRPG--GYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCW 343 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPG--G~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~g~ 343 (522)
..+..++.-+.+.|..| ..+++..--.. .+.++.....+.+.+.+.+.|.
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34566777777777666 45565543221 2233333445556666777775
No 210
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0039 Score=67.37 Aligned_cols=94 Identities=21% Similarity=0.384 Sum_probs=67.8
Q ss_pred eEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHcC----CCeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 218 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~rg----~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
++|-+|||.-.+...+.+. .|+.+|+ |.-.++....++ ....+...|...+.|++++||+|+--. .+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~-----S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkG-tl 124 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDS-----SSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKG-TL 124 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccc-----cHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecC-cc
Confidence 7999999999888888764 4555544 444444444443 346788889999999999999999754 23
Q ss_pred cch-hh---------hHHHHHHHHHhCCCCeEEEEEe
Q 009946 291 DWL-QR---------DGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 291 ~~~-~d---------~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+.. .+ ....+.+++|+|+|||+++..+
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 332 11 2346889999999999987544
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.69 E-value=0.0041 Score=62.38 Aligned_cols=126 Identities=13% Similarity=0.170 Sum_probs=79.6
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc---------CCCeEEEEeCCCCC-CCCCC-CceEE
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSR-SFELA 283 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---------g~~~~~~~~d~~~l-pf~d~-sFDlV 283 (522)
++++||=||-|.|..+..+.+.. ....++..|+.+..++.|++. ..++.++..|...+ .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 56899999999999999998763 112455557777888887764 24678888875332 11123 89999
Q ss_pred Eeccccccchh----hhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q 009946 284 HCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 284 v~s~~~l~~~~----d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
+.-.. -...+ -..++++.+.++|+|||.+++-...... .......+.+.+++....+.
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~----~~~~~~~i~~tl~~~F~~v~ 216 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL----HPELFKSILKTLRSVFPQVK 216 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT----THHHHHHHHHHHHTTSSEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc----chHHHHHHHHHHHHhCCceE
Confidence 96321 11111 1267999999999999999987633321 12334556667777766333
No 212
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.68 E-value=0.012 Score=61.17 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=66.4
Q ss_pred CeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHcC-----CCeEE--EEeCCCC----CCC--CCCCc
Q 009946 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG-----IPSTL--GVLGTKR----LPY--PSRSF 280 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~rg-----~~~~~--~~~d~~~----lpf--~d~sF 280 (522)
..++|+|||.|.=+..|++. .-..+.+.+.|+|..+++.+.++- +.+.+ ..+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999765555432 112356778888888887776542 22333 4455322 321 12346
Q ss_pred eEEEeccccccchhhh--HHHHHHHHH-hCCCCeEEEEEe
Q 009946 281 ELAHCSRCRIDWLQRD--GILLLELDR-LLRPGGYFVYSS 317 (522)
Q Consensus 281 DlVv~s~~~l~~~~d~--~~~L~ei~R-vLkPGG~lvis~ 317 (522)
.+++.-.+.+...+.. ..+|+++.+ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 7887766567666544 468999999 999999999865
No 213
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.65 E-value=0.0066 Score=64.07 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=64.2
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCC--------C---C-----
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLP--------Y---P----- 276 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lp--------f---~----- 276 (522)
+|||++||+|.++..|++. +-.+.+.|.++.+++.|++. +. ++.+...|+.++- + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 5999999999999998875 11344445555565555543 44 5778877764421 1 0
Q ss_pred CCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 277 d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
...||+|+.---.-. -...++..+ ++|++.++++..+. ..-+++..+.+ +|++...+.
T Consensus 277 ~~~~d~v~lDPPR~G---~~~~~l~~l---~~~~~ivYvsC~p~--------tlaRDl~~L~~--~Y~l~~v~~ 334 (353)
T TIGR02143 277 SYNCSTIFVDPPRAG---LDPDTCKLV---QAYERILYISCNPE--------TLKANLEQLSE--THRVERFAL 334 (353)
T ss_pred cCCCCEEEECCCCCC---CcHHHHHHH---HcCCcEEEEEcCHH--------HHHHHHHHHhc--CcEEEEEEE
Confidence 113798885321110 112344444 34788888876332 11234444442 377776554
No 214
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0071 Score=59.05 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCC----CeEEEEe
Q 009946 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI----PSTLGVL 268 (522)
Q Consensus 193 ~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~----~~~~~~~ 268 (522)
..+.+.+++.+. .++++||.||-|-|.....+.++.+.---| ++.++...+.-+..|. ++.+..+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~I--iE~hp~V~krmr~~gw~ek~nViil~g 156 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWI--IEAHPDVLKRMRDWGWREKENVIILEG 156 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEE--EecCHHHHHHHHhcccccccceEEEec
Confidence 345556666554 345789999999999888887763321111 1345555555555442 3444443
Q ss_pred CCCC-CC-CCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 269 GTKR-LP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 269 d~~~-lp-f~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
--++ ++ ++|+.||.|+--. .-++-++...+...+.|+|||+|.|-+..
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred chHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 3222 22 5688999998433 23667788889999999999999998743
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.61 E-value=0.0079 Score=61.89 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC------CCcccccCcccccHHHHHHHHHc----CCC
Q 009946 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER----GIP 262 (522)
Q Consensus 193 ~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~------~v~gvdis~~Dis~a~i~~A~~r----g~~ 262 (522)
....+.+.+++.. ....+|||-.||+|.|...+.+. ......+.+.|+.+.+...|+.+ +..
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 4455566666642 33467999999999998776642 11234455556666666655432 221
Q ss_pred ---eEEEEeCCCCCCC-C-CCCceEEEecccc--ccch------------------hhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 263 ---STLGVLGTKRLPY-P-SRSFELAHCSRCR--IDWL------------------QRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 263 ---~~~~~~d~~~lpf-~-d~sFDlVv~s~~~--l~~~------------------~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
..+...|....+. . ...||+|+++.-. ..|. .....++..+.+.|++||+++++.
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 2466666443332 2 4689999984211 1010 011247889999999999999998
Q ss_pred CCC
Q 009946 318 PEA 320 (522)
Q Consensus 318 P~~ 320 (522)
|..
T Consensus 184 p~~ 186 (311)
T PF02384_consen 184 PNG 186 (311)
T ss_dssp EHH
T ss_pred cch
Confidence 864
No 216
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.54 E-value=0.014 Score=61.15 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=95.7
Q ss_pred ecCCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC---CCcccccCcccccH
Q 009946 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 250 (522)
Q Consensus 174 ~~g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~ 250 (522)
+.|-.|.+.-...+|.++-..--..++++.. .+.+|||+=+|.|.|+..++.. .|.++|+++..+.-
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~----------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~ 226 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVK----------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY 226 (341)
T ss_pred cCCEEEEEchHHeEECCCchHHHHHHHhhhc----------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH
Confidence 3344455554556666665544445555443 2478999999999999999865 25666666544322
Q ss_pred HHHHHHHHcCC--CeEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHH
Q 009946 251 NQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (522)
Q Consensus 251 a~i~~A~~rg~--~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~ 328 (522)
.. +.++-++. .+....+|...++...+.||-|++.. ..+...++..+.+.|++||.+-+..........+
T Consensus 227 L~-eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~-- 298 (341)
T COG2520 227 LK-ENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE-- 298 (341)
T ss_pred HH-HHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEeccchhhccc--
Confidence 22 22222233 25678888888776658899999654 2234568899999999999998865322111000
Q ss_pred HHHHHHHHHHHhcCc
Q 009946 329 RIWNAMYDLLKSMCW 343 (522)
Q Consensus 329 ~~~~~l~~l~~~~g~ 343 (522)
.....+.+.+.+.|+
T Consensus 299 ~~~~~i~~~~~~~~~ 313 (341)
T COG2520 299 RPEKRIKSAARKGGY 313 (341)
T ss_pred chHHHHHHHHhhccC
Confidence 134577778888876
No 217
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.011 Score=64.06 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=75.8
Q ss_pred CCCeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCC---CCCceEEEecccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCR 289 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~---d~sFDlVv~s~~~ 289 (522)
+..++||+=||.|.|+..|+++ .|+|+++++.++..+..+.+.....++.|..++++++... ...||.|+.---.
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR 372 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR 372 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC
Confidence 3478999999999999999965 7888888777665555333333334588888887776533 3478999842210
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~ 347 (522)
-. -...+++.+. -++|-..++++..+. .+.+=...+.+.|+++.+
T Consensus 373 ~G---~~~~~lk~l~-~~~p~~IvYVSCNP~---------TlaRDl~~L~~~gy~i~~ 417 (432)
T COG2265 373 AG---ADREVLKQLA-KLKPKRIVYVSCNPA---------TLARDLAILASTGYEIER 417 (432)
T ss_pred CC---CCHHHHHHHH-hcCCCcEEEEeCCHH---------HHHHHHHHHHhCCeEEEE
Confidence 00 0124555554 457778888877442 133333455666776544
No 218
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.46 E-value=0.012 Score=65.27 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=65.7
Q ss_pred CCCeEEEECCCCchHHHHHhhCC-------CcccccCcccccHHHHHHHHHc----C-CCeEEEEeCCCCC-----CCCC
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHD-------IIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRL-----PYPS 277 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~-------v~gvdis~~Dis~a~i~~A~~r----g-~~~~~~~~d~~~l-----pf~d 277 (522)
...+|||.|||+|.|...++.+. ....++.+.|+++..+..++.. + ....+...+.... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34689999999999988876431 1235667778888887777654 1 2233333331111 1112
Q ss_pred CCceEEEeccccc--cch-------------------------------------------hhhHHHH-HHHHHhCCCCe
Q 009946 278 RSFELAHCSRCRI--DWL-------------------------------------------QRDGILL-LELDRLLRPGG 311 (522)
Q Consensus 278 ~sFDlVv~s~~~l--~~~-------------------------------------------~d~~~~L-~ei~RvLkPGG 311 (522)
+.||+|+++---. ... .....++ ....++|++||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 4799999853111 110 0001134 45789999999
Q ss_pred EEEEEeCCCCCC
Q 009946 312 YFVYSSPEAYAH 323 (522)
Q Consensus 312 ~lvis~P~~~~~ 323 (522)
++.++.|..+..
T Consensus 191 ~~~~I~P~s~l~ 202 (524)
T TIGR02987 191 YVSIISPASWLG 202 (524)
T ss_pred EEEEEEChHHhc
Confidence 999999986543
No 219
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.45 E-value=0.0083 Score=56.73 Aligned_cols=92 Identities=26% Similarity=0.322 Sum_probs=50.6
Q ss_pred CCCCeEEEECCCCchHHHHHhhCC-----CcccccCcccccHHHHHHHHHcCCCeEEEEeC---------CCC-CCCCCC
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHD-----IIAMSLAPNDVHENQIQFALERGIPSTLGVLG---------TKR-LPYPSR 278 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~-----v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d---------~~~-lpf~d~ 278 (522)
+...+|||+||++|.|+..+.++. |+++|+.+.+.. ..+....+| +.. ++-..+
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhcccccc
Confidence 345889999999999999998763 566666554111 111111111 111 111126
Q ss_pred CceEEEeccccccch----hh----h---HHHHHHHHHhCCCCeEEEEEe
Q 009946 279 SFELAHCSRCRIDWL----QR----D---GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 279 sFDlVv~s~~~l~~~----~d----~---~~~L~ei~RvLkPGG~lvis~ 317 (522)
.||+|+|-. ..... .+ . ...+.-+.+.|+|||.+++-.
T Consensus 91 ~~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 91 KFDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp SESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred Ccceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 899999743 11111 11 1 224555567899999999866
No 220
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.037 Score=53.99 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=60.9
Q ss_pred CCCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCce
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 281 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp--------f~d~sFD 281 (522)
+..+|+|+|+-.|+++..++++ .|+++|+.+.+.. ..+.+.++|+..-+ +....+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 3578999999999999988864 3778888776653 23666777754432 2334579
Q ss_pred EEEeccc-------cccchh--hh-HHHHHHHHHhCCCCeEEEEEe
Q 009946 282 LAHCSRC-------RIDWLQ--RD-GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 282 lVv~s~~-------~l~~~~--d~-~~~L~ei~RvLkPGG~lvis~ 317 (522)
+|+|-.+ ..+|.. .. ..++.-+.++|+|||.|++-.
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 9986221 011211 11 346667778999999999865
No 221
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.43 E-value=0.021 Score=56.26 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=90.1
Q ss_pred CCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHcCCC
Q 009946 188 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP 262 (522)
Q Consensus 188 F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~rg~~ 262 (522)
|.+...+....|..-+... . -.++.+||-+|+.+|....++++- .|.++++++.. -...++.|++| .+
T Consensus 51 W~P~RSKLaAai~~Gl~~~--~---ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~-~rdL~~la~~R-~N 123 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENI--P---IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRS-MRDLLNLAKKR-PN 123 (229)
T ss_dssp E-TTT-HHHHHHHTT-S----S-----TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHH-HHHHHHHHHHS-TT
T ss_pred cCchhhHHHHHHHcCcccc--C---CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchh-HHHHHHHhccC-Cc
Confidence 3445555555554433311 1 134468999999999888888752 45677777643 34566778776 45
Q ss_pred eEEEEeCCCCCC-C--CCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCC-CCCChhHHHHHHHHHHHH
Q 009946 263 STLGVLGTKRLP-Y--PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLL 338 (522)
Q Consensus 263 ~~~~~~d~~~lp-f--~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~-~~~~~e~~~~~~~l~~l~ 338 (522)
+.-+..|+..-. | --+..|+|++-- ......+.++.++...||+||.++++.... .....+....|.+-.+.+
T Consensus 124 IiPIl~DAr~P~~Y~~lv~~VDvI~~DV---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L 200 (229)
T PF01269_consen 124 IIPILEDARHPEKYRMLVEMVDVIFQDV---AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKL 200 (229)
T ss_dssp EEEEES-TTSGGGGTTTS--EEEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHH
T ss_pred eeeeeccCCChHHhhcccccccEEEecC---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHH
Confidence 655566654211 1 124799999543 222334568889999999999999987421 111122334577666777
Q ss_pred HhcCcEEEEEec
Q 009946 339 KSMCWKIVSKKD 350 (522)
Q Consensus 339 ~~~g~~~v~~~~ 350 (522)
++.+|+..+...
T Consensus 201 ~~~~~~~~e~i~ 212 (229)
T PF01269_consen 201 KEEGFKPLEQIT 212 (229)
T ss_dssp HCTTCEEEEEEE
T ss_pred HHcCCChheEec
Confidence 888999887654
No 222
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.40 E-value=0.0045 Score=63.86 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=59.1
Q ss_pred CCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHc----C--CCeEEEEeCCCCCCCCCCCceEEEe
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHC 285 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d~~~lpf~d~sFDlVv~ 285 (522)
..+.|||+|||+|.++...++. .|.+++. ..|.+.|++. . .++.++.+.++++.+| +..|+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA------S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA------SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEeh------hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEe
Confidence 3478999999999887766654 4444432 2344555543 2 2355666668888877 57999996
Q ss_pred ccccccchhhhHH---HHHHHHHhCCCCeEEEEE
Q 009946 286 SRCRIDWLQRDGI---LLLELDRLLRPGGYFVYS 316 (522)
Q Consensus 286 s~~~l~~~~d~~~---~L~ei~RvLkPGG~lvis 316 (522)
-. +.++.--++ ..-..+|.|+|.|..+=+
T Consensus 250 EP--MG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 250 EP--MGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred cc--chhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 43 333322222 223456999999998743
No 223
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.024 Score=57.30 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=49.5
Q ss_pred CCeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHc---CCCeEEEEeCCCCCCCCCC-CceEEEec
Q 009946 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSR-SFELAHCS 286 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~r---g~~~~~~~~d~~~lpf~d~-sFDlVv~s 286 (522)
..+|||||+|.|.++..|+++ .|+++++ .+.++..-+++ ..++.++.+|+...++++- .++.|+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEi-----D~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEI-----DRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEe-----CHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 478999999999999999986 4556654 45555555444 3568889999988888753 57888854
No 224
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.19 Score=50.07 Aligned_cols=125 Identities=18% Similarity=0.274 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHcCCCeEE-EEeCCCCCC---CCCCCceEEEec
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLP---YPSRSFELAHCS 286 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~rg~~~~~-~~~d~~~lp---f~d~sFDlVv~s 286 (522)
-+.+.+||||+-||.|+..++++ .|.++|+--..++.. .+..+++.. ...++..+. +. +..|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k-----LR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK-----LRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh-----HhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 34588999999999999999986 566665544444433 333444433 233344332 22 257899875
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCC------------CCChhHH-HHHHHHHHHHHhcCcEEEEE
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY------------AHDPENR-RIWNAMYDLLKSMCWKIVSK 348 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~------------~~~~e~~-~~~~~l~~l~~~~g~~~v~~ 348 (522)
-+.+ ....+|..+..+|+|+|.++.-.-+-+ -++++.. ....++.+.+...||.+...
T Consensus 152 vSFI----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 152 VSFI----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred eehh----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 4322 346789999999999999887653321 1233222 34568888899999988753
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.96 E-value=0.011 Score=63.01 Aligned_cols=97 Identities=8% Similarity=0.054 Sum_probs=63.3
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC-CeEEEEeCCCCCC-CCCCCceEEEeccccc
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLGVLGTKRLP-YPSRSFELAHCSRCRI 290 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~-~~~~~~~d~~~lp-f~d~sFDlVv~s~~~l 290 (522)
-+|||+.||+|..+..++.+.--+-.+..+|+++..++.+++. +. ++.+...|+..+- .....||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC---
Confidence 4799999999999999886410012334445555555554433 33 3566666654432 1135699998422
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+ ..+..++..+.+.+++||.+.++..
T Consensus 123 -f-Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 -F-GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred -C-CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2 2345799999999999999999854
No 226
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.041 Score=58.19 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=65.8
Q ss_pred CCCCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHH----cCCC-eEEEEeCCCCCC---CCCCCceEEE
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALE----RGIP-STLGVLGTKRLP---YPSRSFELAH 284 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~----rg~~-~~~~~~d~~~lp---f~d~sFDlVv 284 (522)
..+.+|||+.++.|+=+.+|++. ...+..+.+.|.++..++..++ .|.. +.+...|...++ ...+.||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 34588999999999877777654 1112333455666665554433 3554 456666665554 2223599999
Q ss_pred e----cc-ccccchhh----------------hHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 285 C----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 285 ~----s~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
. |. .+++-.++ ..++|..+.++|||||.++.++=.
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 6 21 11211111 145899999999999999998843
No 227
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.85 E-value=0.038 Score=53.37 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=56.3
Q ss_pred CCCCeEEEECCCCchHHHHHh--hC-CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 214 GNIRNVLDVGCGVASFGAYLL--SH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La--~~-~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
-+.++|||+|+|+|..+..-+ .. .++..|+.+. .-.+..-.+..++..+.+...|.-. .+..||+|+.+....
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~-~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW-LEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChH-HHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceec
Confidence 356899999999996554443 32 4555555532 2222222344456666666555433 456799999887433
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.+ +.-..++. ..+.|+..|..+++.
T Consensus 154 ~~-~~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 154 NH-TEADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred Cc-hHHHHHHH-HHHHHHhCCCEEEEe
Confidence 32 23345666 555565555555544
No 228
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.81 E-value=0.023 Score=55.49 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHh---hC-CCcccccCcccc--cHHHHHHHHH----cCC
Q 009946 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL---SH-DIIAMSLAPNDV--HENQIQFALE----RGI 261 (522)
Q Consensus 192 a~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La---~~-~v~gvdis~~Di--s~a~i~~A~~----rg~ 261 (522)
.......+.+.+.+. +....+|||||.|......+ .. ...|+++.+.-. +..+.+..++ .|.
T Consensus 27 ~~~~~~~il~~~~l~--------~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 27 SPEFVSKILDELNLT--------PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp HHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred CHHHHHHHHHHhCCC--------CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555555432 34689999999997655443 22 366777765322 1111111111 122
Q ss_pred ---CeEEEEeCCCCCCCCC---CCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEE
Q 009946 262 ---PSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (522)
Q Consensus 262 ---~~~~~~~d~~~lpf~d---~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi 315 (522)
++.+..+|..+.++.. ..-|+|++++. -+.++....|.++..-||+|-+++-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 3455555544332110 23599998773 3456666677888889999877653
No 229
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.75 E-value=0.034 Score=57.09 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=62.1
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CC---CeEEEEeCCCC-CC--CCCCCceEEEe
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GI---PSTLGVLGTKR-LP--YPSRSFELAHC 285 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~---~~~~~~~d~~~-lp--f~d~sFDlVv~ 285 (522)
.++|||+=|=||+|+.+.+... +.++..+|.|...++.+++. +. ...+...|+.+ +. -..++||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3689999999999998866441 22344446666666666554 32 45777777432 21 12358999998
Q ss_pred cc-----ccccchhhhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 286 SR-----CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 286 s~-----~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
-- ....-..+...++..+.++|+|||.+++++-.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 21 11222345567899999999999999877643
No 230
>PRK13699 putative methylase; Provisional
Probab=95.62 E-value=0.04 Score=54.61 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=50.4
Q ss_pred EEEeCCCCC--CCCCCCceEEEecccc---cc-----------chhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHH
Q 009946 265 LGVLGTKRL--PYPSRSFELAHCSRCR---ID-----------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (522)
Q Consensus 265 ~~~~d~~~l--pf~d~sFDlVv~s~~~---l~-----------~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~ 328 (522)
+..+|..++ .++++++|+|++.--- .. +..-....+.|++|+|||||.+++.....
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-------- 75 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-------- 75 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc--------
Confidence 444554332 3667888888875210 00 00112468999999999999998643211
Q ss_pred HHHHHHHHHHHhcCcEEEEEecceEEEeccC
Q 009946 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (522)
Q Consensus 329 ~~~~~l~~l~~~~g~~~v~~~~~~~iw~Kp~ 359 (522)
....+...+++.||.+. ...||.|+-
T Consensus 76 -~~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 76 -RVDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred -cHHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 12345566788999876 455899874
No 231
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.61 E-value=0.018 Score=55.25 Aligned_cols=131 Identities=20% Similarity=0.205 Sum_probs=72.9
Q ss_pred CCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHH
Q 009946 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQF 255 (522)
Q Consensus 176 g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~ 255 (522)
|..+..|.+ ....+..+...+.+-+++... . -...++||+-||+|.++...+.+.. -.+.-+|.+....+.
T Consensus 10 gr~l~~p~~-~~~RPT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~ 80 (183)
T PF03602_consen 10 GRKLKTPKG-DNTRPTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKI 80 (183)
T ss_dssp T-EEE-TT---TS-SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHH
T ss_pred CCEecCCCC-CCcCCCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHH
Confidence 445555543 334455566667777777632 0 1247899999999999998887632 223333445444444
Q ss_pred HHHc----CC--CeEEEEeCCC-CCC---CCCCCceEEEeccccccchhh--hHHHHHHHH--HhCCCCeEEEEEeC
Q 009946 256 ALER----GI--PSTLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSP 318 (522)
Q Consensus 256 A~~r----g~--~~~~~~~d~~-~lp---f~d~sFDlVv~s~~~l~~~~d--~~~~L~ei~--RvLkPGG~lvis~P 318 (522)
.++. +. .+.+...|.. .++ .....||+|++-- .|... ...++..+. .+|+++|.+++-..
T Consensus 81 i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 81 IKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 4433 33 3566666632 221 2457899999643 23322 256777776 79999999998664
No 232
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.38 E-value=0.097 Score=55.88 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=34.1
Q ss_pred CCCCCCCCceEEEeccccccchhhh--------------------------------------HHHHHHHHHhCCCCeEE
Q 009946 272 RLPYPSRSFELAHCSRCRIDWLQRD--------------------------------------GILLLELDRLLRPGGYF 313 (522)
Q Consensus 272 ~lpf~d~sFDlVv~s~~~l~~~~d~--------------------------------------~~~L~ei~RvLkPGG~l 313 (522)
.--||+++.+++|++. .+||.... ..+|+-=.+-|.|||.+
T Consensus 155 ~RLfP~~Slh~~~Ss~-slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~m 233 (386)
T PLN02668 155 RRLFPARSIDVFHSAF-SLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAM 233 (386)
T ss_pred ccccCCCceEEEEeec-cceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEE
Confidence 3348899999999988 48997521 12444455778999999
Q ss_pred EEEeCC
Q 009946 314 VYSSPE 319 (522)
Q Consensus 314 vis~P~ 319 (522)
+++...
T Consensus 234 vl~~~G 239 (386)
T PLN02668 234 FLVCLG 239 (386)
T ss_pred EEEEec
Confidence 998743
No 233
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=0.011 Score=54.55 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=48.3
Q ss_pred CCeEEEECCCCchHHHHHh---hCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La---~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
++.++|+|||.|-+..... ...+.|+|+.+..+ +-..+.|.+..+++.+.+++..++.+..+.||.++.+.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 4679999999997663332 23577776665433 22223444545677888888888887778899998653
No 234
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.24 E-value=0.059 Score=56.53 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=53.3
Q ss_pred CCCCeEEEECCCCchHHHHHhhC--------------------CCcccccCcccccHHHHHHHHH-----cCCCeEE--E
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTL--G 266 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~--------------------~v~gvdis~~Dis~a~i~~A~~-----rg~~~~~--~ 266 (522)
.+.-+|+|+||..|..+..+... .|.--|+-..|.+.-....... ...++.. +
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 45578999999999777665432 1112233344443322222111 1223222 2
Q ss_pred EeCCCCCCCCCCCceEEEeccccccchhhh---------------------------------------HHHHHHHHHhC
Q 009946 267 VLGTKRLPYPSRSFELAHCSRCRIDWLQRD---------------------------------------GILLLELDRLL 307 (522)
Q Consensus 267 ~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~---------------------------------------~~~L~ei~RvL 307 (522)
-+....--||+++.|+++++. .+||.... ..+|+-=.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~-alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSY-ALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEec-hhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 233444448899999999988 48886321 11444555778
Q ss_pred CCCeEEEEEeC
Q 009946 308 RPGGYFVYSSP 318 (522)
Q Consensus 308 kPGG~lvis~P 318 (522)
+|||+++++.+
T Consensus 174 v~GG~mvl~~~ 184 (334)
T PF03492_consen 174 VPGGRMVLTFL 184 (334)
T ss_dssp EEEEEEEEEEE
T ss_pred ccCcEEEEEEe
Confidence 99999999874
No 235
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.12 E-value=0.22 Score=48.00 Aligned_cols=133 Identities=21% Similarity=0.210 Sum_probs=76.7
Q ss_pred CCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHH
Q 009946 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQF 255 (522)
Q Consensus 176 g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~ 255 (522)
|..+.+|.+ ....+..+...+.+-+++... .-...++||+=+|+|.++..-+.+... ....+|.+....+.
T Consensus 11 gr~L~~p~~-~~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~ 81 (187)
T COG0742 11 GRKLKTPDG-PGTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKI 81 (187)
T ss_pred CCcccCCCC-CCcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHH
Confidence 445556553 344556667777777777631 123478999999999999998877311 22222344444444
Q ss_pred HHHc----C--CCeEEEEeCCCCC-CCCCC--CceEEEeccccccc-hhhhHHHHH--HHHHhCCCCeEEEEEeC
Q 009946 256 ALER----G--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRIDW-LQRDGILLL--ELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 256 A~~r----g--~~~~~~~~d~~~l-pf~d~--sFDlVv~s~~~l~~-~~d~~~~L~--ei~RvLkPGG~lvis~P 318 (522)
.++. + .+..+...|+... +-... .||+|+.--- .+. ..+....+. +-...|+|+|.+++-..
T Consensus 82 l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 82 LKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 4333 4 4566777775532 11222 4999995431 211 111122222 35678999999999654
No 236
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.11 E-value=0.14 Score=49.51 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCchHHHHHhhC---CCcccccCcccc-------cHHHHHHHHHcCC-CeEEEEeCCCCCC-------CC
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV-------HENQIQFALERGI-PSTLGVLGTKRLP-------YP 276 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Di-------s~a~i~~A~~rg~-~~~~~~~d~~~lp-------f~ 276 (522)
...+|+|+=-|.|.|+..++.. .-....+.+.+. .+.+...+++... +....-...-.++ .+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 4578999999999999988754 111122233222 1222222222211 1111111111222 12
Q ss_pred CCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCC----CCCCChhHHHH--HHHHHHHHHhcCcEEEEEec
Q 009946 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE----AYAHDPENRRI--WNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 277 d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~----~~~~~~e~~~~--~~~l~~l~~~~g~~~v~~~~ 350 (522)
..++|.++... .+| ......+..++++.|||||.+++.+.. .-..+...... -..+.+..+..||++..+..
T Consensus 128 ~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 128 TAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred cchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeeh
Confidence 33444444332 233 344477999999999999999997732 11122222221 22577788999999987665
Q ss_pred c
Q 009946 351 Q 351 (522)
Q Consensus 351 ~ 351 (522)
.
T Consensus 206 i 206 (238)
T COG4798 206 I 206 (238)
T ss_pred h
Confidence 4
No 237
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.06 E-value=0.11 Score=52.58 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=46.3
Q ss_pred CCCeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHc--CCC----eEEEEeCCCCCCCCCCCceEEEec
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--GIP----STLGVLGTKRLPYPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~r--g~~----~~~~~~d~~~lpf~d~sFDlVv~s 286 (522)
....|||||-|||.++..|++. .|+++++++.++ ....++ |.+ ..+..+|....++| .||.++++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmv-----ael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMV-----AELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHH-----HHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 4578999999999999999875 677776666544 333333 333 56777787666655 59999963
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.96 E-value=0.93 Score=44.26 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=97.2
Q ss_pred CCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC----CCcccccCcccccHHHHHHHHHcCC
Q 009946 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI 261 (522)
Q Consensus 186 ~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~v~gvdis~~Dis~a~i~~A~~rg~ 261 (522)
..|.+...+....|..-+... +-....+||=+|+.+|....++++- .+.++++++... ...+..|++| .
T Consensus 52 R~Wnp~RSKLaAaIl~Gl~~~-----pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R-~ 124 (231)
T COG1889 52 REWNPRRSKLAAAILKGLKNF-----PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKR-P 124 (231)
T ss_pred eeeCcchhHHHHHHHcCcccC-----CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhC-C
Confidence 345566666666665544421 1234578999999999988888752 467888888654 4556778776 3
Q ss_pred CeEEEEeCCCCC---CCCCCCceEEEeccccccchhhh-HHHHHHHHHhCCCCeEEEEEeCC-CCCCChhHHHHHHHHHH
Q 009946 262 PSTLGVLGTKRL---PYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIWNAMYD 336 (522)
Q Consensus 262 ~~~~~~~d~~~l---pf~d~sFDlVv~s~~~l~~~~d~-~~~L~ei~RvLkPGG~lvis~P~-~~~~~~e~~~~~~~l~~ 336 (522)
++.-+..|+..- ..--+..|+|++--+ .++. +.+..++..-||+||+++++.-. ......+....|.+-..
T Consensus 125 Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 125 NIIPILEDARKPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred CceeeecccCCcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 333344443221 111245898885331 2333 45788999999999988887632 11223344456776666
Q ss_pred HHHhcCcEEEEEecc
Q 009946 337 LLKSMCWKIVSKKDQ 351 (522)
Q Consensus 337 l~~~~g~~~v~~~~~ 351 (522)
.+++.+|++.+..+.
T Consensus 201 kL~~~~f~i~e~~~L 215 (231)
T COG1889 201 KLEEGGFEILEVVDL 215 (231)
T ss_pred HHHhcCceeeEEecc
Confidence 678888999877664
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.82 E-value=0.15 Score=52.00 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCCeEEEECCCCchHHHH-HhhCCCcccccCcccccHHHHHHHHHc-------CCCeEEEEeCCCCCCCCCCCceEEEec
Q 009946 215 NIRNVLDVGCGVASFGAY-LLSHDIIAMSLAPNDVHENQIQFALER-------GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~-La~~~v~gvdis~~Dis~a~i~~A~~r-------g~~~~~~~~d~~~lpf~d~sFDlVv~s 286 (522)
.+++|+=||+|.=-++.. |+++...+..+...|.+++..+.+++- +..+.|..+|....+..-..||+|+.+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 456999999997655544 444322233444556666666655431 456788888877666555689999865
Q ss_pred cccccc-hhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 287 RCRIDW-LQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 287 ~~~l~~-~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
. ...- ..+..++|..+.+.++||..+++-.
T Consensus 200 a-lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 A-LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred h-hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 5 2321 2355789999999999999999865
No 240
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.77 E-value=0.097 Score=60.28 Aligned_cols=103 Identities=17% Similarity=0.049 Sum_probs=64.5
Q ss_pred CCeEEEECCCCchHHHHHhhC----------C-------------------------------CcccccCcccccHHHHH
Q 009946 216 IRNVLDVGCGVASFGAYLLSH----------D-------------------------------IIAMSLAPNDVHENQIQ 254 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----------~-------------------------------v~gvdis~~Dis~a~i~ 254 (522)
...++|.+||+|++....+.. . .....+.+.|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 367999999999888654320 0 01124677788888888
Q ss_pred HHHHc----CC--CeEEEEeCCCCCCCC--CCCceEEEeccccccch---hhhHHHHH---HHHHhCCCCeEEEEEeC
Q 009946 255 FALER----GI--PSTLGVLGTKRLPYP--SRSFELAHCSRCRIDWL---QRDGILLL---ELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 255 ~A~~r----g~--~~~~~~~d~~~lpf~--d~sFDlVv~s~~~l~~~---~d~~~~L~---ei~RvLkPGG~lvis~P 318 (522)
.|+++ |. .+.+...|+.+++.+ .++||+|+++--...-. .+...+.. +..+.+.+|+.+++.++
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 77765 44 367888888877654 35799999863211111 12223333 34444458999887765
No 241
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.69 E-value=0.03 Score=59.16 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=32.7
Q ss_pred eEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHcCC-CeEEEEeCCCC
Q 009946 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR 272 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~rg~-~~~~~~~d~~~ 272 (522)
+|||+-||+|.|+..|++. .|+|+++.+..+..+.. .|+..++ ++.+..+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~-Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARE-NAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHH-HHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHH-HHHHcCCCcceEEEeeccc
Confidence 7999999999999999975 56667665544433332 2233343 57887766543
No 242
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.65 E-value=0.13 Score=46.81 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCCCeEEEECCCCchHHHHHhh-----CCCcccccCcccccHHHHHHHHHc----CC----CeEEEEeCCCCCCCCCCCc
Q 009946 214 GNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER----GI----PSTLGVLGTKRLPYPSRSF 280 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~-----~~v~gvdis~~Dis~a~i~~A~~r----g~----~~~~~~~d~~~lpf~d~sF 280 (522)
.+..+|+|+|||.|.++..|+. . ....+.+.|..+...+.+.++ +. ...+...+..... .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCC
Confidence 4567899999999999998887 3 233444445444444444433 21 2223333222221 13456
Q ss_pred eEEEeccccccchhhhH-HHHHHHHHhCCCCeEEEEEeCCCC
Q 009946 281 ELAHCSRCRIDWLQRDG-ILLLELDRLLRPGGYFVYSSPEAY 321 (522)
Q Consensus 281 DlVv~s~~~l~~~~d~~-~~L~ei~RvLkPGG~lvis~P~~~ 321 (522)
++++ .+|--.+.. .+|+-..+ ++-.+++..|.-|
T Consensus 101 ~~~v----gLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 101 DILV----GLHACGDLSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred eEEE----EeecccchHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 7776 344444543 34444444 7777777777654
No 243
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.59 E-value=0.2 Score=49.04 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=66.4
Q ss_pred EEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----C--CCeEEEEeC-CCCCCCCCCCceEEEecccccc
Q 009946 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 291 (522)
Q Consensus 219 VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g--~~~~~~~~d-~~~lpf~d~sFDlVv~s~~~l~ 291 (522)
|.||||-.|.+..+|.+++.. -.+...|+++.-++.|++. + ..+.+..+| +..++.. +..|.|+.+...-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~-e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG-EDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG-G---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC-CCCCEEEEecCCH-
Confidence 689999999999999976321 1222334444444444433 3 346777777 4444422 2368887655211
Q ss_pred chhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
.-...+|.+....++..-.|++.- .. ....+++.+.+.||.+..+.-
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lILqP-~~---------~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLILQP-NT---------HAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEEEEE-SS----------HHHHHHHHHHTTEEEEEEEE
T ss_pred --HHHHHHHHhhHHHhccCCeEEEeC-CC---------ChHHHHHHHHHCCCEEEEeEE
Confidence 122456777777777666777743 22 145788899999999987654
No 244
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.53 E-value=0.18 Score=52.97 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=92.8
Q ss_pred ecCCCCCCCCccHH-HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH
Q 009946 180 NFPGGGTHFHDGAD-KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258 (522)
Q Consensus 180 ~Fpgg~~~F~~ga~-~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~ 258 (522)
-|-+|+-+|....+ +|.+.+.- . .+..-...++||=+|.|.|.-+..|.+.. ...+++..|+.+.|++.++.
T Consensus 259 LYldG~LQfsTrDe~RYhEsLV~----p--als~~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~ 331 (508)
T COG4262 259 LYLDGGLQFSTRDEYRYHESLVY----P--ALSSVRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASH 331 (508)
T ss_pred EEEcCceeeeechhhhhhheeee----c--ccccccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhh
Confidence 34556666665433 34443221 0 11112345789999999999999998752 12355666777788887763
Q ss_pred c------------CCCeEEEEeCCCCC-CCCCCCceEEEeccccccchhh-----hHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 259 R------------GIPSTLGVLGTKRL-PYPSRSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 259 r------------g~~~~~~~~d~~~l-pf~d~sFDlVv~s~~~l~~~~d-----~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
. .+++.+...|+-++ .-..+.||.|+.-. .-.-.+. -.++..-+.|.|+++|.+++.....
T Consensus 332 ~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 332 ATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred hhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 2 23455555554332 22345899998532 0111111 1457788899999999999977555
Q ss_pred CCCChhHHHHHHHHHHHHHhcCcEEEE
Q 009946 321 YAHDPENRRIWNAMYDLLKSMCWKIVS 347 (522)
Q Consensus 321 ~~~~~e~~~~~~~l~~l~~~~g~~~v~ 347 (522)
+.... ..| .+.+.++++||.+.-
T Consensus 411 y~tp~---vfw-~i~aTik~AG~~~~P 433 (508)
T COG4262 411 YFTPR---VFW-RIDATIKSAGYRVWP 433 (508)
T ss_pred ccCCc---eee-eehhHHHhCcceeee
Confidence 43221 224 466778999987654
No 245
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.12 E-value=0.097 Score=54.03 Aligned_cols=73 Identities=15% Similarity=-0.100 Sum_probs=51.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---CCeEEEEeCCCCCC--CCCC--CceEEEeccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLP--YPSR--SFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---~~~~~~~~d~~~lp--f~d~--sFDlVv~s~~ 288 (522)
...+||.+||.|..+..+++..-....+.+.|.++.+++.|+++- .++.+...+..++. .+++ ++|.|++-..
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 358999999999999999876211245666678888888887652 35778877766543 1222 7999997543
No 246
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.93 E-value=0.19 Score=50.80 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc---CCCeEEEEe
Q 009946 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVL 268 (522)
Q Consensus 192 a~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---g~~~~~~~~ 268 (522)
.....+.|.+.+... ....|||||+|+|.++..|+++. -.+...+..+...+..+++ ..++.+...
T Consensus 15 ~~~~~~~Iv~~~~~~--------~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~ 83 (262)
T PF00398_consen 15 DPNIADKIVDALDLS--------EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHHTCG--------TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES
T ss_pred CHHHHHHHHHhcCCC--------CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeec
Confidence 345666777777643 34789999999999999998762 2333335556666666664 457889999
Q ss_pred CCCCCCCCC---CCceEEEeccccccchhhhHHHHHHHHHhCCC
Q 009946 269 GTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 309 (522)
Q Consensus 269 d~~~lpf~d---~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkP 309 (522)
|...+..++ +.-..|+++ +.|. -...++..+...-+.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~N---lPy~-is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGN---LPYN-ISSPILRKLLELYRF 123 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEE---ETGT-GHHHHHHHHHHHGGG
T ss_pred chhccccHHhhcCCceEEEEE---eccc-chHHHHHHHhhcccc
Confidence 988887654 344556643 3441 123466666653333
No 247
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.51 E-value=0.083 Score=54.11 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=63.1
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHH----cCCC-eEEEEeCCCCC-C-CCCCCceEEEe--
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RGIP-STLGVLGTKRL-P-YPSRSFELAHC-- 285 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~----rg~~-~~~~~~d~~~l-p-f~d~sFDlVv~-- 285 (522)
...+|||+.+|.|+=+.++++..-..-.+...|++...+...++ .|.. +.....|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 34679999999998887777542112245555666666554433 3543 44444554443 1 22346999986
Q ss_pred --ccc-cccchhh----------------hHHHHHHHHHhC----CCCeEEEEEeC
Q 009946 286 --SRC-RIDWLQR----------------DGILLLELDRLL----RPGGYFVYSSP 318 (522)
Q Consensus 286 --s~~-~l~~~~d----------------~~~~L~ei~RvL----kPGG~lvis~P 318 (522)
|.. ++...++ ..++|..+.+.| ||||+++.++=
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 211 1111111 145899999999 99999999883
No 248
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.46 E-value=0.086 Score=51.24 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=50.8
Q ss_pred eEEEECCCCchHHHHHhhC----CCcccccCc--ccccHHHHHHHHHcC-----CCeEEEEeC-CCCCC--CCCCCc-eE
Q 009946 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAP--NDVHENQIQFALERG-----IPSTLGVLG-TKRLP--YPSRSF-EL 282 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~----~v~gvdis~--~Dis~a~i~~A~~rg-----~~~~~~~~d-~~~lp--f~d~sF-Dl 282 (522)
.+.|||||.|.+...|+.. -+.|++|-- .|.-++.++..+... .++.+...+ ..-+| |..+.. -+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 4999999999999998865 456665522 133344444443221 112222222 11222 111111 11
Q ss_pred EEeccccccchhh-------hHHHHHHHHHhCCCCeEEEEEe
Q 009946 283 AHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 283 Vv~s~~~l~~~~d-------~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.++.. --|+-.. ...++.+..-+|++||.++.++
T Consensus 143 ff~fp-dpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFP-DPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecC-ChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 11111 0111100 1348999999999999999754
No 249
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=92.91 E-value=0.11 Score=49.95 Aligned_cols=91 Identities=14% Similarity=0.214 Sum_probs=60.7
Q ss_pred CeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHc----C-CCeEEEEeCCCCCCCCCCCceEEEeccc-
Q 009946 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRLPYPSRSFELAHCSRC- 288 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~r----g-~~~~~~~~d~~~lpf~d~sFDlVv~s~~- 288 (522)
..+.|+|+|+|.++...+.. +|.+++.++ .....|.+. | .+..++.+|+....|+ ..|+|+|-..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP-----k~a~~a~eN~~v~g~~n~evv~gDA~~y~fe--~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDP-----KRARLAEENLHVPGDVNWEVVVGDARDYDFE--NADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCc-----HHHHHhhhcCCCCCCcceEEEeccccccccc--ccceeHHHHhh
Confidence 46999999999877665543 566665544 333455554 2 3578888999888884 5799998541
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEE
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFV 314 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lv 314 (522)
..-..+....++..+...||-.+.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 00011233457888888999999887
No 250
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.88 E-value=0.1 Score=57.00 Aligned_cols=54 Identities=28% Similarity=0.463 Sum_probs=41.4
Q ss_pred CeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHcCC-CeEEEEeCCC
Q 009946 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTK 271 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~rg~-~~~~~~~d~~ 271 (522)
..+||+-||||.++..++.+ .|.|+++++.++..|.. .|+..|+ ++.|+++-++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAE 441 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchh
Confidence 77999999999999999976 78899888877766654 3444454 6778877443
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.86 E-value=0.028 Score=48.22 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=37.4
Q ss_pred EEECCCCchHHHHHhhC-------CCcccccCcccccHHHHHHHHHcC--CCeEEEEeCCCCC-C-CCCCCceEEEeccc
Q 009946 220 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-P-YPSRSFELAHCSRC 288 (522)
Q Consensus 220 LDIGCGtG~~a~~La~~-------~v~gvdis~~Dis~a~i~~A~~rg--~~~~~~~~d~~~l-p-f~d~sFDlVv~s~~ 288 (522)
||||+..|..+..+++. .+.++|..+. .+...+..++.+ .++.+..++..+. + ++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777643 2455554442 112333333332 3577777775432 1 3357899999433
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
-|-.+.....+..+.+.|+|||.+++.+
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3333455668899999999999999853
No 252
>PRK11524 putative methyltransferase; Provisional
Probab=92.85 E-value=0.29 Score=49.99 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=48.2
Q ss_pred EEEEeCCCCC--CCCCCCceEEEecccc-c--------------cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChh
Q 009946 264 TLGVLGTKRL--PYPSRSFELAHCSRCR-I--------------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE 326 (522)
Q Consensus 264 ~~~~~d~~~l--pf~d~sFDlVv~s~~~-l--------------~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e 326 (522)
.+..+|..++ .+++++||+|++.--- . .|..-...+|.++.|+|||||.+++......
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~----- 84 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN----- 84 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh-----
Confidence 4455554332 3557789999884210 0 0111125689999999999999998643211
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecceEEEeccC
Q 009946 327 NRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (522)
Q Consensus 327 ~~~~~~~l~~l~~~~g~~~v~~~~~~~iw~Kp~ 359 (522)
.. ...++.+.||... ...||.|+.
T Consensus 85 ----~~-~~~~~~~~~f~~~----~~iiW~k~~ 108 (284)
T PRK11524 85 ----MP-FIDLYCRKLFTIK----SRIVWSYDS 108 (284)
T ss_pred ----hh-HHHHHHhcCcceE----EEEEEEeCC
Confidence 11 1233445677654 446898863
No 253
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.73 E-value=0.63 Score=48.81 Aligned_cols=104 Identities=18% Similarity=0.056 Sum_probs=54.5
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCC-----eEEEEeCCCCCCCC-CCCceEEE
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP-----STLGVLGTKRLPYP-SRSFELAH 284 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~-----~~~~~~d~~~lpf~-d~sFDlVv 284 (522)
.+++|||+|.|.|.-+..+-+--..--+.+-.+.+++...+.... +.. ..-+. ..+++++ ...|++|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt--~dRl~lp~ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT--EDRLSLPAADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc--hhccCCCccceeehhh
Confidence 456799999999865554433210001111112344443332211 110 11112 2344443 24578877
Q ss_pred eccccccchhh--hHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 285 CSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 285 ~s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
.+.-+++-... ....++.+..+++|||.|+|+.+..
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 65533332211 1337888999999999999998764
No 254
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.57 E-value=0.36 Score=49.82 Aligned_cols=94 Identities=18% Similarity=0.282 Sum_probs=45.6
Q ss_pred ccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc-----CC--C
Q 009946 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GI--P 262 (522)
Q Consensus 190 ~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r-----g~--~ 262 (522)
+++..|+..|.+++......++ ..-++||||||.-.+-..|..+ ..+..+.+.|+.+..++.|++. ++ .
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~---~~v~glDIGTGAscIYpLLg~~-~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~ 155 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIP---EKVRGLDIGTGASCIYPLLGAK-LYGWSFVATDIDPKSLESARENVERNPNLESR 155 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHH-HH--EEEEEES-HHHHHHHHHHHHHT-T-TTT
T ss_pred chhHHHHHHHHHHhhccccccc---cceEeecCCccHHHHHHHHhhh-hcCCeEEEecCCHHHHHHHHHHHHhccccccc
Confidence 3456799999999875543211 2468999999988554444322 1244555555555555555433 22 3
Q ss_pred eEEEEeCCC-----CCCCCCCCceEEEecc
Q 009946 263 STLGVLGTK-----RLPYPSRSFELAHCSR 287 (522)
Q Consensus 263 ~~~~~~d~~-----~lpf~d~sFDlVv~s~ 287 (522)
+.+...... .+..+++.||+.+|+-
T Consensus 156 I~l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 156 IELRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEEEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred eEEEEcCCccccchhhhcccceeeEEecCC
Confidence 444433211 1223346899999975
No 255
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.51 E-value=0.99 Score=45.89 Aligned_cols=96 Identities=16% Similarity=0.247 Sum_probs=49.2
Q ss_pred CCCeEEEECCCCc--hHHHHHhhC-----CCcccccCcccccHHHHHHHHHc---CCC--eEEEEeCCCCC---------
Q 009946 215 NIRNVLDVGCGVA--SFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---GIP--STLGVLGTKRL--------- 273 (522)
Q Consensus 215 ~~~~VLDIGCGtG--~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~r---g~~--~~~~~~d~~~l--------- 273 (522)
.++..||||||.- .....++++ +|+-+|..+ ..+..++.. ..+ ..++.+|+.+.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP-----vv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP-----VVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH-----HHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc-----hHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHH
Confidence 5788999999954 344445432 455555444 444433332 234 67778886542
Q ss_pred ----CCCCCCceEEEeccccccchhh---hHHHHHHHHHhCCCCeEEEEEeC
Q 009946 274 ----PYPSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 274 ----pf~d~sFDlVv~s~~~l~~~~d---~~~~L~ei~RvLkPGG~lvis~P 318 (522)
.+ ++..-+++ ..++||++| +..++..+...|.||.+|+|+..
T Consensus 143 ~~~lD~-~rPVavll--~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 143 RGLLDF-DRPVAVLL--VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp HCC--T-TS--EEEE--CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred HhcCCC-CCCeeeee--eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 11 23333343 336888865 47799999999999999999874
No 256
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.20 E-value=1.5 Score=41.48 Aligned_cols=119 Identities=19% Similarity=0.251 Sum_probs=70.9
Q ss_pred ECCCCchHHHHHhhC-----CCcccccCcccc-------cHHHHHHHHHcCCCeEEEEeCCCCCC----CCCCCceEEEe
Q 009946 222 VGCGVASFGAYLLSH-----DIIAMSLAPNDV-------HENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 285 (522)
Q Consensus 222 IGCGtG~~a~~La~~-----~v~gvdis~~Di-------s~a~i~~A~~rg~~~~~~~~d~~~lp----f~d~sFDlVv~ 285 (522)
||=|.=+|+..|+.. ++++..+...+. ....++..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566666888888765 233333222110 011222223445544433 4555544 35678999996
Q ss_pred ccccccchh--------h-------hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 286 SRCRIDWLQ--------R-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 286 s~~~l~~~~--------d-------~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
++- |.. + ...++..+.++|+++|.+.|+.-....+ ..|+ ++.+++..|+.+.+...
T Consensus 82 NFP---H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-----~~W~-i~~lA~~~gl~l~~~~~ 152 (166)
T PF10354_consen 82 NFP---HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-----DSWN-IEELAAEAGLVLVRKVP 152 (166)
T ss_pred eCC---CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-----cccc-HHHHHHhcCCEEEEEec
Confidence 542 222 0 1348899999999999999987543221 2365 67999999999886554
No 257
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.84 E-value=0.38 Score=47.75 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=57.5
Q ss_pred CccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc-----CCC-
Q 009946 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIP- 262 (522)
Q Consensus 189 ~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r-----g~~- 262 (522)
-++...|+..++++|....+.++ ++..++||||.|.--+- .|....-.+.++++.|++...++.|+.. +..
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCIY-PliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~ 130 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCIY-PLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLER 130 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCccccc-ccccceeecceeecCccCHHHHHHHHHHHHcCcchhh
Confidence 46778899999999987766555 44578999998875332 2333333455555656655555544432 221
Q ss_pred -eEEEEeCCCC-----CCCCCCCceEEEeccc
Q 009946 263 -STLGVLGTKR-----LPYPSRSFELAHCSRC 288 (522)
Q Consensus 263 -~~~~~~d~~~-----lpf~d~sFDlVv~s~~ 288 (522)
+.+....-.+ +--..+.||++.|+--
T Consensus 131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPP 162 (292)
T COG3129 131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPP 162 (292)
T ss_pred heeEEeccCccccccccccccceeeeEecCCC
Confidence 2222222111 1122567999999874
No 258
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.80 E-value=2.7 Score=44.55 Aligned_cols=121 Identities=21% Similarity=0.142 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcc---cccCcccccHHHHHHH---HHcCC--CeEEE
Q 009946 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIA---MSLAPNDVHENQIQFA---LERGI--PSTLG 266 (522)
Q Consensus 195 y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~g---vdis~~Dis~a~i~~A---~~rg~--~~~~~ 266 (522)
|......|++...-.+ .+..+|||+.+..|+=++.|.+.-.-. --+...|+.....+.- .++-. ...+.
T Consensus 138 ~rqeavSmlPvL~L~v---~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~ 214 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGV---KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVT 214 (375)
T ss_pred hhhhhhhccchhhccc---CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeee
Confidence 4445566666443333 344679999999998888877641100 1234456655554432 23311 22222
Q ss_pred EeCCCCCC---------CCCCCceEEEe----cc-ccccchhh-----------------hHHHHHHHHHhCCCCeEEEE
Q 009946 267 VLGTKRLP---------YPSRSFELAHC----SR-CRIDWLQR-----------------DGILLLELDRLLRPGGYFVY 315 (522)
Q Consensus 267 ~~d~~~lp---------f~d~sFDlVv~----s~-~~l~~~~d-----------------~~~~L~ei~RvLkPGG~lvi 315 (522)
..++...| .....||-|+| +. .++....+ .-.+|..-.++||+||.++.
T Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY 294 (375)
T KOG2198|consen 215 NHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY 294 (375)
T ss_pred cccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 22322222 23346999987 11 11111110 13488899999999999999
Q ss_pred EeC
Q 009946 316 SSP 318 (522)
Q Consensus 316 s~P 318 (522)
++=
T Consensus 295 STC 297 (375)
T KOG2198|consen 295 STC 297 (375)
T ss_pred ecc
Confidence 883
No 259
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.73 E-value=0.73 Score=49.06 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=66.1
Q ss_pred CeEEEECCCCchHHHHHhhC--CCc-----------------------------cc-------ccCcccccHHHHHHHHH
Q 009946 217 RNVLDVGCGVASFGAYLLSH--DII-----------------------------AM-------SLAPNDVHENQIQFALE 258 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~v~-----------------------------gv-------dis~~Dis~a~i~~A~~ 258 (522)
..++|-=||+|++....+-. ++- .. -+.+.|+...+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 57999999999988665422 110 00 13355666666666554
Q ss_pred c----CCC--eEEEEeCCCCCCCCCCCceEEEeccc---cccch---hhh-HHHHHHHHHhCCCCeEEEEEeCC
Q 009946 259 R----GIP--STLGVLGTKRLPYPSRSFELAHCSRC---RIDWL---QRD-GILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 259 r----g~~--~~~~~~d~~~lpf~d~sFDlVv~s~~---~l~~~---~d~-~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
+ |.. +.|.++|+..++-+-+.+|+|+|+-- .+.-. ... ..+...+.+.++--+.+++++..
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 3 543 78999999888755478999998631 11111 111 34666777888888899998754
No 260
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.70 E-value=3 Score=41.77 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=67.5
Q ss_pred CCCeEEEECCCCc-hHHHHHhh--CCCcccccCcccccHHHHH----HHHHcCCCeEEEEeCCC-CCCCC-CCCceEEEe
Q 009946 215 NIRNVLDVGCGVA-SFGAYLLS--HDIIAMSLAPNDVHENQIQ----FALERGIPSTLGVLGTK-RLPYP-SRSFELAHC 285 (522)
Q Consensus 215 ~~~~VLDIGCGtG-~~a~~La~--~~v~gvdis~~Dis~a~i~----~A~~rg~~~~~~~~d~~-~lpf~-d~sFDlVv~ 285 (522)
.+++||=+|=..- +++..|.. ++|+.+ |+.+..++ .|++.|.++.....|.. .+|-. .++||++++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~Vv-----DiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVV-----DIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE------S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEE-----EcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEe
Confidence 3578999997665 44555543 245555 44455544 45666888888888854 34421 378999996
Q ss_pred ccccccchhhhHHHHHHHHHhCCCCe-EEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecce
Q 009946 286 SRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (522)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~~ 352 (522)
-- ..-.+....++......||.-| ..+++.. +.+.....|.++++.+.++|+.+.......
T Consensus 119 DP--PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~----~~~~s~~~~~~~Q~~l~~~gl~i~dii~~F 180 (243)
T PF01861_consen 119 DP--PYTPEGLKLFLSRGIEALKGEGCAGYFGFT----HKEASPDKWLEVQRFLLEMGLVITDIIPDF 180 (243)
T ss_dssp -----SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEE
T ss_pred CC--CCCHHHHHHHHHHHHHHhCCCCceEEEEEe----cCcCcHHHHHHHHHHHHHCCcCHHHHHhhh
Confidence 43 2222344668999999998766 4444331 222235678899999999999887665543
No 261
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=91.32 E-value=0.26 Score=46.52 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=38.3
Q ss_pred eEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHH----cCC--CeEEEEeCCCCCC--CCCCC-ceEEEec
Q 009946 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE----RGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 286 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~----rg~--~~~~~~~d~~~lp--f~d~s-FDlVv~s 286 (522)
.|+|+.||.|.-+..++.. .|+++|+ ++..++.|+. .|. ++.+..+|..++. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidi-----d~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDI-----DPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES------HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEEC-----CHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999986 4666655 4455555443 354 5788888854332 12122 8999985
No 262
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=90.40 E-value=0.27 Score=44.16 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=16.6
Q ss_pred eEEEECCCCchHHHHHhhC
Q 009946 218 NVLDVGCGVASFGAYLLSH 236 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~ 236 (522)
++||||||.|.++..++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~ 19 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK 19 (143)
T ss_pred CEEEccCCccHHHHHHHHh
Confidence 4899999999999888764
No 263
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=90.05 E-value=1.3 Score=47.45 Aligned_cols=106 Identities=20% Similarity=0.309 Sum_probs=62.9
Q ss_pred CCCCCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHH----HHHcCCC-eEEEEeCCCCCC---CCCCCceEE
Q 009946 213 GGNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQF----ALERGIP-STLGVLGTKRLP---YPSRSFELA 283 (522)
Q Consensus 213 ~~~~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~----A~~rg~~-~~~~~~d~~~lp---f~d~sFDlV 283 (522)
.+.+.||||+.+..|.=+.+++.. .-+|+ |.+.|.....+.. +.+.|.. ......|...+| ++. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~-I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGV-IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCce-EEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 456789999999999655444432 11233 3344555544443 3333654 344555665555 553 89998
Q ss_pred Ee----ccccc-----------------cchhhhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 284 HC----SRCRI-----------------DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 284 v~----s~~~l-----------------~~~~d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
.. |...+ .+..-..++|..+..++++||+|+.++=..
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 73 32000 011112468889999999999999987443
No 264
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=89.65 E-value=0.25 Score=43.50 Aligned_cols=38 Identities=21% Similarity=0.563 Sum_probs=27.5
Q ss_pred CceEEEeccccccch-----h-hhHHHHHHHHHhCCCCeEEEEEe
Q 009946 279 SFELAHCSRCRIDWL-----Q-RDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 279 sFDlVv~s~~~l~~~-----~-d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.||+|+|.. +.-|+ + ....+++.+++.|+|||.|++--
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999865 45454 1 22569999999999999999854
No 265
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.41 E-value=1.1 Score=47.25 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=64.8
Q ss_pred CCCCeEEEECCC-CchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 214 GNIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 214 ~~~~~VLDIGCG-tG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
.+..+|+=+|+| .|.++..++.. .+.++...+.++...+.|++.|....+...+.....--.+.||+|+..- .
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-~--- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-G--- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC-C---
Confidence 345778888887 33667777764 2466677788889889999988765554323322221123499998443 1
Q ss_pred hhhhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 293 LQRDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
...+....+.||+||+++++.-.
T Consensus 239 ----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ----hhhHHHHHHHHhcCCEEEEECCC
Confidence 34688888999999999998743
No 266
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=88.67 E-value=2.4 Score=42.73 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=30.5
Q ss_pred ceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 280 FDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
||+|+++.+ +......+.++.-+...|-.+|.+++..+
T Consensus 163 ~DlilasDv-vy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDV-VYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeee-eecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999985 55566677899999999999997766653
No 267
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=87.63 E-value=4.3 Score=40.95 Aligned_cols=129 Identities=21% Similarity=0.254 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCCCCCCCceEEEeccccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l 290 (522)
.+.+|+|||||.=-++...... .....+.+.|++..++++...- +.+..+.+.|...-+. ....|+.+..- ++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~-~~~~DlaLllK-~l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP-KEPADLALLLK-TL 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT-TSEESEEEEET--H
T ss_pred CCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC-CCCcchhhHHH-HH
Confidence 3688999999999888877643 2234667778888887776543 6777888887555433 35689998554 45
Q ss_pred cchhhh--HHHHHHHHHhCCCCeEEEEEeCCCCC--CChhHHH-HHHHHHHHHHhcCcEEEEE
Q 009946 291 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA--HDPENRR-IWNAMYDLLKSMCWKIVSK 348 (522)
Q Consensus 291 ~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~~~--~~~e~~~-~~~~l~~l~~~~g~~~v~~ 348 (522)
+-++.. ...+.-+.++ + .=.++++.|.-.- +...... .-..++.++..-+|.+.+.
T Consensus 182 p~le~q~~g~g~~ll~~~-~-~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDAL-R-SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRL 242 (251)
T ss_dssp HHHHHHSTTHHHHHHHHS-C-ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHHhcchHHHHHHHh-C-CCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeee
Confidence 544333 2223333333 2 2356677764211 1111111 2236788888888885543
No 268
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.95 E-value=0.71 Score=43.48 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=45.5
Q ss_pred CCceEEEeccccccchh--------hh---HHHHHHHHHhCCCCeEEEEEeCCCCCCChhH-HHHHHHHHHHHHhcCcEE
Q 009946 278 RSFELAHCSRCRIDWLQ--------RD---GILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIWNAMYDLLKSMCWKI 345 (522)
Q Consensus 278 ~sFDlVv~s~~~l~~~~--------d~---~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~-~~~~~~l~~l~~~~g~~~ 345 (522)
++||.+.|.. +++|.- |+ .+.+.++.++|||||.++++.|---.....+ .+.+..++-.+--.||+.
T Consensus 62 ~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 62 GSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred ccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 6799988655 566541 11 4589999999999999999998542222221 233444444445568887
Q ss_pred EEE
Q 009946 346 VSK 348 (522)
Q Consensus 346 v~~ 348 (522)
+..
T Consensus 141 i~t 143 (177)
T PF03269_consen 141 IDT 143 (177)
T ss_pred Eee
Confidence 754
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=85.99 E-value=6 Score=38.36 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHcCCCeEEEEe-CCCCC--------CCCCCCc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL-GTKRL--------PYPSRSF 280 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~-d~~~l--------pf~d~sF 280 (522)
+..+|||+||..|+++.-..++ .|.|+|+-....-+ | +.+..+ |..+- ..|+...
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~---------G--a~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPE---------G--ATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCC---------C--cccccccccCCHHHHHHHHHhCCCCcc
Confidence 3578999999999999877665 34455543332211 1 111111 11110 1245678
Q ss_pred eEEEeccc-------cccchhh--h-HHHHHHHHHhCCCCeEEEEEe
Q 009946 281 ELAHCSRC-------RIDWLQR--D-GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 281 DlVv~s~~-------~l~~~~d--~-~~~L~ei~RvLkPGG~lvis~ 317 (522)
|+|++-.. ...|... . ..+|.-....++|+|.|+.-.
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 88885220 0111111 1 234555567789999999865
No 270
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=85.78 E-value=7.8 Score=39.41 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=73.3
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCC--CCCceEEEeccc-----cc
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP--SRSFELAHCSRC-----RI 290 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~--d~sFDlVv~s~~-----~l 290 (522)
+++|+-||.|.+...+.+.... -+...|+.+.+++..+...... +...|+.++... ...+|+++.+.- ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 5999999999998888765321 1344566777766655543322 445666655422 246999997431 00
Q ss_pred c---chhhh-HHHHH---HHHHhCCCCeEEEEEe-CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecceEEEecc
Q 009946 291 D---WLQRD-GILLL---ELDRLLRPGGYFVYSS-PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358 (522)
Q Consensus 291 ~---~~~d~-~~~L~---ei~RvLkPGG~lvis~-P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~~~iw~Kp 358 (522)
. -..+. ..++. ++.+.++|. ++++-. +.... ......+..+...++++||.+....-...-+.-|
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~--~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvP 151 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLT--HDNGNTLKVILNTLEELGYNVYWKLLNASDYGVP 151 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhc--cCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCC
Confidence 0 01122 22333 334445676 233322 22211 1122457788888899999876655443333334
No 271
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.52 E-value=18 Score=35.87 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=69.0
Q ss_pred eEEEECCCCchHHHHHhhC----CCcccccCcccccHHHHHHHHHcC-CCeEEEEeCCCCCCC-CCCCceEEEecccccc
Q 009946 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPY-PSRSFELAHCSRCRID 291 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~----~v~gvdis~~Dis~a~i~~A~~rg-~~~~~~~~d~~~lpf-~d~sFDlVv~s~~~l~ 291 (522)
++.||||-.|.+..+|... .+++.|+++.-+..+..++.+... ..+....+|. -.++ ++..+|.|+.... .
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGM--G 95 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGM--G 95 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCC--c
Confidence 4999999999999999865 345566666544444333333321 2334444443 1123 2346899886542 1
Q ss_pred chhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q 009946 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (522)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~ 349 (522)
-.-...+|.+-..-|+-==++++ -|+.. -..+++.+...+|.+..+.
T Consensus 96 -G~lI~~ILee~~~~l~~~~rlIL-QPn~~---------~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 96 -GTLIREILEEGKEKLKGVERLIL-QPNIH---------TYELREWLSANSYEIKAET 142 (226)
T ss_pred -HHHHHHHHHHhhhhhcCcceEEE-CCCCC---------HHHHHHHHHhCCceeeeee
Confidence 11224567777777764434554 33321 2357788899999888654
No 272
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=84.27 E-value=2.5 Score=46.65 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=72.2
Q ss_pred CCeEEEECCCCchHHHHHhh------C--CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 216 IRNVLDVGCGVASFGAYLLS------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~------~--~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
...|+=+|+|-|-+.....+ + .+.+++-.+..+..-.-..-+.-...+.++..|...++.|....|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 56788999999976654432 2 2334444443332111111111145688898999999866678999985 3
Q ss_pred ccccchhh-h--HHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCc
Q 009946 288 CRIDWLQR-D--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (522)
Q Consensus 288 ~~l~~~~d-~--~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~ 343 (522)
++.-+.| . .+.|..+.+.|||.|..+=..-..|-...-....|+++.+.-....|
T Consensus 447 -LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a~~~~~~f 504 (649)
T KOG0822|consen 447 -LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKATNDPNAF 504 (649)
T ss_pred -hhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHhcCCcccc
Confidence 2332322 2 57999999999999866522211122222233557776666543333
No 273
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.15 E-value=2.5 Score=48.40 Aligned_cols=75 Identities=16% Similarity=0.046 Sum_probs=46.9
Q ss_pred EEEEeCCCC-CCCCCCCceEEEeccccccchhhh--HHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 009946 264 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 340 (522)
Q Consensus 264 ~~~~~d~~~-lpf~d~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~ 340 (522)
.+..+|+.+ ++--...||+++.-...-...++. ..+|..+.|+++|||.|.=.+. -..+++-+..
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~------------a~~vr~~l~~ 217 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS------------AGFVRRGLQE 217 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh------------HHHHHHHHHH
Confidence 345555432 221124699998533112222222 6799999999999999984221 2357788999
Q ss_pred cCcEEEEEec
Q 009946 341 MCWKIVSKKD 350 (522)
Q Consensus 341 ~g~~~v~~~~ 350 (522)
+||++.+...
T Consensus 218 ~GF~v~~~~~ 227 (662)
T PRK01747 218 AGFTVRKVKG 227 (662)
T ss_pred cCCeeeecCC
Confidence 9999876544
No 274
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=83.55 E-value=5.1 Score=42.36 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=60.3
Q ss_pred CCeEEEECCCC-chHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCCCC-C-----CC-CCCCceEEEec
Q 009946 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-----PY-PSRSFELAHCS 286 (522)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~~~-l-----pf-~d~sFDlVv~s 286 (522)
..+||.+|||. |.++..+++.. +. .+...+.++...+.+++.+. ..+......+ + .+ ..+.+|+|+-.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 46799999987 77777777652 22 34555667778888887632 2222111111 1 11 22368998853
Q ss_pred ccc----------cc----chhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 287 RCR----------ID----WLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 287 ~~~----------l~----~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
... +. -..+....+.++.+.|+++|.+++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 210 00 112345688999999999999998753
No 275
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=83.25 E-value=3.3 Score=38.15 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=53.6
Q ss_pred cccHHHHHHHHHc----CC--CeEEEEeCCCCCC--CCCCCceEEEeccccccch--------hhhHHHHHHHHHhCCCC
Q 009946 247 DVHENQIQFALER----GI--PSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWL--------QRDGILLLELDRLLRPG 310 (522)
Q Consensus 247 Dis~a~i~~A~~r----g~--~~~~~~~d~~~lp--f~d~sFDlVv~s~~~l~~~--------~d~~~~L~ei~RvLkPG 310 (522)
|+.+.+++..+++ +. ++.++..+=+.+. .+.+.+|+|+.+..-+.-. ...-.++..+.++|+||
T Consensus 6 DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~g 85 (140)
T PF06962_consen 6 DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPG 85 (140)
T ss_dssp ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEE
T ss_pred ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccC
Confidence 5666666666555 22 4677666544443 2334899998654322211 11135899999999999
Q ss_pred eEEEEEeCCCCCCChhHHHHHHHHHHHHHh---cCcEEEE
Q 009946 311 GYFVYSSPEAYAHDPENRRIWNAMYDLLKS---MCWKIVS 347 (522)
Q Consensus 311 G~lvis~P~~~~~~~e~~~~~~~l~~l~~~---~g~~~v~ 347 (522)
|.+.++. |.-.+...++.+.+.+.+++ -.|.+..
T Consensus 86 G~i~iv~---Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~ 122 (140)
T PF06962_consen 86 GIITIVV---YPGHPGGKEESEAVEEFLASLDQKEFNVLK 122 (140)
T ss_dssp EEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEE
T ss_pred CEEEEEE---eCCCCCCHHHHHHHHHHHHhCCcceEEEEE
Confidence 9999876 22223344455556666555 3455543
No 276
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=83.11 E-value=1.8 Score=42.41 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=49.7
Q ss_pred CCeEEEECCCCchHHHHHhh--------CCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC-------C-CCCC
Q 009946 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------Y-PSRS 279 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--------~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp-------f-~d~s 279 (522)
+..|+++|.-.|..+..+++ ..|.++|+...+.....++. .-....+.+..+|..+.. . ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 47899999999876655542 36778887543332222111 001356888888865432 0 1123
Q ss_pred ceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 280 FDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
-.+|+ -. ..|...+....|+....++++|+++++.+
T Consensus 112 ~vlVi-lD-s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 112 PVLVI-LD-SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SEEEE-ES-S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ceEEE-EC-CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 34554 23 34445566677888999999999999854
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=82.59 E-value=2.2 Score=40.76 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=36.7
Q ss_pred cchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcC-cEEEEEecceEEEecc
Q 009946 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVSKKDQTVIWAKP 358 (522)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-~~~v~~~~~~~iw~Kp 358 (522)
.|..-....+.++.|+|||||.+++......... .....+.+..| |.+. ...+|.|+
T Consensus 30 ~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~----~~iiW~K~ 87 (231)
T PF01555_consen 30 EYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAG-------FLFELALEIFGGFFLR----NEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECT-------HHHHHHHHHHTT-EEE----EEEEEE-S
T ss_pred HHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhH-------HHHHHHHHHhhhhhee----ccceeEec
Confidence 3444457799999999999999998775543211 12334455567 8776 46789887
No 278
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=82.34 E-value=7.8 Score=38.99 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=60.9
Q ss_pred CCCeEEEECCCCchHHHHHhhC-----CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC----CCCCCceEEEe
Q 009946 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 285 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~-----~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp----f~d~sFDlVv~ 285 (522)
...+||=+|++.|..-.+..+- -|.+++++... -...++.|++| .++.-++-|+. .| +.-...|+|++
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rs-GRdL~nmAkkR-tNiiPIiEDAr-hP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRS-GRDLINMAKKR-TNIIPIIEDAR-HPAKYRMLVGMVDVIFA 232 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccc-hHHHHHHhhcc-CCceeeeccCC-CchheeeeeeeEEEEec
Confidence 3467999999999877776642 45667776643 34556777766 34433433432 22 11235677773
Q ss_pred ccccccchhhh-HHHHHHHHHhCCCCeEEEEEeC
Q 009946 286 SRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 286 s~~~l~~~~d~-~~~L~ei~RvLkPGG~lvis~P 318 (522)
-- . .++. ..+..+..-.||+||.|+++..
T Consensus 233 Dv---a-qpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 233 DV---A-QPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred cC---C-CchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 32 1 1333 4567788999999999999874
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.90 E-value=6.4 Score=43.80 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=61.9
Q ss_pred CCCeEEEECCCCch-HHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCC---------CCC----------
Q 009946 215 NIRNVLDVGCGVAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---------RLP---------- 274 (522)
Q Consensus 215 ~~~~VLDIGCGtG~-~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~---------~lp---------- 274 (522)
.+.+|+=+|||.-. .+...+.. .|.++...|.++..++.+++.|........... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 46899999999654 44444443 234566778888888999887754221111000 010
Q ss_pred CCC--CCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 275 YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 275 f~d--~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
+.+ +.+|+|+... .....+.+..+.+++.+.+||||.++...
T Consensus 242 ~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 242 FAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 011 3599999654 23322334444699999999999998765
No 280
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=81.46 E-value=1.5 Score=38.56 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCccc
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAM 241 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gv 241 (522)
......|||||+|.+..-|......|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~ 84 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGW 84 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcc
Confidence 345699999999999888876644443
No 281
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=80.25 E-value=6.4 Score=39.95 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=56.0
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCC-----CCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~l-----pf~d~sFDlVv~s~~~ 289 (522)
..+||..|+| .|..+..++... +..+...+.++...+.+++.+....+...+ ... ....+.+|+|+....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC-
Confidence 3578888876 466777777642 333444456677777777666532221111 110 123456998884321
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.++.+.|+++|.++...
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEC
Confidence 1347888999999999999765
No 282
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.91 E-value=2.2 Score=42.53 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCeEEEECCCCchHHHHHhhC-------------CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC--------
Q 009946 216 IRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------- 274 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-------------~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp-------- 274 (522)
..+++|+.+..|+++..|.++ .|+++|+-+... -..+...++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----------I~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----------IEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----------cCceEEeecccCCHhHHHHHHHH
Confidence 578999999999999988754 133333322211 012333444543321
Q ss_pred CCCCCceEEEeccc----cccchhhh------HHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhc
Q 009946 275 YPSRSFELAHCSRC----RIDWLQRD------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (522)
Q Consensus 275 f~d~sFDlVv~s~~----~l~~~~d~------~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~ 341 (522)
|....-|+|+|-.+ .+|-+.+. -..|.-...+|||||.|+--. .+.......+..++.++++.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi----fRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI----FRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh----hccCchHHHHHHHHHHhhce
Confidence 44457899998431 23333322 235666779999999998532 22233333455666665553
No 283
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=79.35 E-value=13 Score=41.09 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHc----CCC--e
Q 009946 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GIP--S 263 (522)
Q Consensus 193 ~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~r----g~~--~ 263 (522)
.+..+.+.+++.. ....+|.|-.||+|++....... ...-+.+.+.+........|+.. +++ +
T Consensus 172 ~~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~ 243 (489)
T COG0286 172 REVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDA 243 (489)
T ss_pred HHHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 4556677777763 12348999999999876554422 11124566777777777777654 443 3
Q ss_pred EEEEeCCCCCCC-----CCCCceEEEecccc--ccchh---------------------h-hHHHHHHHHHhCCCCeEEE
Q 009946 264 TLGVLGTKRLPY-----PSRSFELAHCSRCR--IDWLQ---------------------R-DGILLLELDRLLRPGGYFV 314 (522)
Q Consensus 264 ~~~~~d~~~lpf-----~d~sFDlVv~s~~~--l~~~~---------------------d-~~~~L~ei~RvLkPGG~lv 314 (522)
.....|...-|. ..+.||.|+++.-. ..|.. . ...++..+...|+|||+..
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 455555433332 33679999874210 11110 1 1458999999999999888
Q ss_pred EEeCCC
Q 009946 315 YSSPEA 320 (522)
Q Consensus 315 is~P~~ 320 (522)
++.|..
T Consensus 324 ivl~~g 329 (489)
T COG0286 324 IVLPDG 329 (489)
T ss_pred EEecCC
Confidence 888764
No 284
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=78.14 E-value=8.2 Score=39.96 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=54.8
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEe--CCCCCCCCCCCceEEEecccccc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVL--GTKRLPYPSRSFELAHCSRCRID 291 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~--d~~~lpf~d~sFDlVv~s~~~l~ 291 (522)
..+||=+||| .|.++..++.. .+. .+...+.++..++.+++.|....+... +..++....+.||+|+-...
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 4678888875 33444555543 133 344446677788888887754332211 11111111234898884321
Q ss_pred chhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
....+....++|++||.+++...
T Consensus 245 ----~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ----HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12467788899999999998763
No 285
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=76.57 E-value=6.3 Score=40.74 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=63.0
Q ss_pred CCCCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHc---------CCCeEEEEeCCCCC-C-CCCCCce
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-P-YPSRSFE 281 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~r---------g~~~~~~~~d~~~l-p-f~d~sFD 281 (522)
.+++++|=||-|.|.+......+ .+-.+.+ .++.+..++..++. +..+.+..+|.-.+ . ...++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~--~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILL--CEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceee--ehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 34678999999999998777665 2222322 23444444443332 44567777763221 1 3368899
Q ss_pred EEEeccccccchh----hhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 282 LAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 282 lVv~s~~~l~~~~----d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
+|+.-.+ -.-.+ -...++..+.+.||+||+++...-.
T Consensus 198 Vii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 9985321 11111 1145788899999999999987633
No 286
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=75.02 E-value=1.6 Score=44.51 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=26.1
Q ss_pred CceEEEeccccccchhhhHHH-HHHHHHhCCCCeEEEEEeCCC
Q 009946 279 SFELAHCSRCRIDWLQRDGIL-LLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 279 sFDlVv~s~~~l~~~~d~~~~-L~ei~RvLkPGG~lvis~P~~ 320 (522)
.||+|.++. .+.-......+ +.....++++.|.+++..-..
T Consensus 196 ~ydlIlsSe-tiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~ 237 (282)
T KOG2920|consen 196 HYDLILSSE-TIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKL 237 (282)
T ss_pred chhhhhhhh-hhhCcchhhhhHhhhhhhcCCccchhhhhhHhh
Confidence 688888776 33333333333 566777888889888765433
No 287
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=74.50 E-value=4 Score=43.18 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=46.1
Q ss_pred ecCCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC---C----CcccccCcc
Q 009946 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---D----IIAMSLAPN 246 (522)
Q Consensus 174 ~~g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~----v~gvdis~~ 246 (522)
..||-++-|.-+..|......+.-.+-+.+. ...+..+++||.|.|.++..|+.. . .-+..+.-+
T Consensus 44 ~~GDFiTApels~lFGella~~~~~~wq~~g--------~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~ii 115 (370)
T COG1565 44 RKGDFITAPELSQLFGELLAEQFLQLWQELG--------RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYII 115 (370)
T ss_pred ccCCeeechhHHHHHHHHHHHHHHHHHHHhc--------CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEE
Confidence 3566666666666665554443332222222 123467999999999999888753 1 124455556
Q ss_pred cccHHHHHHHHHc
Q 009946 247 DVHENQIQFALER 259 (522)
Q Consensus 247 Dis~a~i~~A~~r 259 (522)
+.|+..++.-++.
T Consensus 116 E~s~~L~~~Qk~~ 128 (370)
T COG1565 116 EPSPELRARQKET 128 (370)
T ss_pred ecCHHHHHHHHHH
Confidence 7777776655554
No 288
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=73.60 E-value=21 Score=38.05 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=55.8
Q ss_pred CCCeEEEECCCCc----hHHHHHhhC-------CCccccc----Ccc---cccHHHHHHHHHcCCCeEEEEeC---CCCC
Q 009946 215 NIRNVLDVGCGVA----SFGAYLLSH-------DIIAMSL----APN---DVHENQIQFALERGIPSTLGVLG---TKRL 273 (522)
Q Consensus 215 ~~~~VLDIGCGtG----~~a~~La~~-------~v~gvdi----s~~---Dis~a~i~~A~~rg~~~~~~~~d---~~~l 273 (522)
+.-.|+|+|.|.| .+...|+.+ ++|+++. ... +..+...++|+..|++..|...- .+.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 4467999999999 455556654 3555544 111 11223335677778888877642 2332
Q ss_pred C-----CCCCCceEEEeccccccchhh-------hHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 274 P-----YPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 274 p-----f~d~sFDlVv~s~~~l~~~~d-------~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
. ..++..=+|-|.. .+|++.+ +...+-...|-|+|.-.++ +..+.
T Consensus 190 ~~~~l~~~~~E~laVn~~~-~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~-~E~ea 246 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMF-QLHHLLDESGALENPRDAFLRVIRSLNPKVVVL-VEQEA 246 (374)
T ss_pred CHHHhCccCCcEEEEEeeh-hhhhhccccccccchHHHHHHHHHhcCCCEEEE-EeecC
Confidence 1 2222222233333 4666642 2334556677899985444 44433
No 289
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=73.39 E-value=6.8 Score=40.38 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCC-CCCChhHH-HHHHHHHHHHHhcCcEEE
Q 009946 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENR-RIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~-~~~~~e~~-~~~~~l~~l~~~~g~~~v 346 (522)
+-||+|+.+....|++.+ ++.++++|+|.+++-+... ..-..+.. ..-.++.++|+.+||+..
T Consensus 221 ~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred CCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 679999987654554322 3888999999999977532 22233333 344589999999999754
No 290
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=71.26 E-value=5.9 Score=42.36 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=73.7
Q ss_pred eecCCCCCCCCccHHHHHHHHHHHhcCCCcccC-CCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHH
Q 009946 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLN-NGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL 257 (522)
Q Consensus 179 ~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~-~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~ 257 (522)
..++..+..|-+....+-+.|.-++-.....+. .....-+|||.=+|+|.=+...+..--....+...|+++..++..+
T Consensus 12 ~~~~~~~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~ 91 (377)
T PF02005_consen 12 ITIPKKAPVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIK 91 (377)
T ss_dssp SSTTTTSSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHH
T ss_pred eecCCCCCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHH
Confidence 446666677766666655544432200000000 0112357999999999766655532111235667788888877766
Q ss_pred Hc----CCC---eEEEEeCCCCCC-CCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 258 ER----GIP---STLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 258 ~r----g~~---~~~~~~d~~~lp-f~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+. +.. +.+...|+..+- ...+.||+|=. .=.-.+..+|..+.+.+|.||.+.++..
T Consensus 92 ~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-----DPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 92 RNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-----DPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-------SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred HhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-----CCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 54 333 456666654432 23467999962 2223456799999999999999999875
No 291
>PHA01634 hypothetical protein
Probab=70.47 E-value=19 Score=32.95 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=26.8
Q ss_pred CCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHH
Q 009946 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE 258 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~ 258 (522)
.++|+|||++.|..+.+++-+ .|.++ +.++...+..++
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~-----E~~~kl~k~~ee 69 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQY-----EKEEKLRKKWEE 69 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEe-----ccCHHHHHHHHH
Confidence 478999999999998888744 34444 455566565554
No 292
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=68.36 E-value=24 Score=35.87 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=53.0
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
..+||-+|+| .|..+..++.. .++.+.....++...+.+++.+....+.........-..+.+|+++... .
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~--~---- 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV--V---- 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--C----
Confidence 4678888886 55555555554 2344444455666667776655332221111000000124589888432 1
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEe
Q 009946 295 RDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.++.+.|+++|.++...
T Consensus 235 -~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -cHHHHHHHHHhcccCCEEEEEC
Confidence 1246788899999999999765
No 293
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=68.33 E-value=5.8 Score=34.61 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=55.8
Q ss_pred CCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCC-----C-CCCCCceEEEeccccccchhhhHH
Q 009946 225 GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCSRCRIDWLQRDGI 298 (522)
Q Consensus 225 GtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~l-----p-f~d~sFDlVv~s~~~l~~~~d~~~ 298 (522)
|.|.++..++... +..+...+.++..++.+++.|....+.. ...++ . ...+.+|+|+-... ...
T Consensus 1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~Ga~~~~~~-~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKELGADHVIDY-SDDDFVEQIRELTGGRGVDVVIDCVG-------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTESEEEET-TTSSHHHHHHHHTTTSSEEEEEESSS-------SHH
T ss_pred ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhcccccccc-cccccccccccccccccceEEEEecC-------cHH
Confidence 4677888887652 3566666788888899998874333221 11111 1 23357999983321 145
Q ss_pred HHHHHHHhCCCCeEEEEEeC
Q 009946 299 LLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 299 ~L~ei~RvLkPGG~lvis~P 318 (522)
.+.+...+|+++|.+++..-
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESS
T ss_pred HHHHHHHHhccCCEEEEEEc
Confidence 89999999999999998774
No 294
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.35 E-value=13 Score=34.81 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHc-CCCeEEEEeCCC
Q 009946 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTK 271 (522)
Q Consensus 196 ~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~r-g~~~~~~~~d~~ 271 (522)
.+++++.+.+.. +.+..+.+|+|.|.|.+-..-++. .-+|+++++.-+.-+....-++. +....|..-|+.
T Consensus 58 teQv~nVLSll~-----~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdlw 132 (199)
T KOG4058|consen 58 TEQVENVLSLLR-----GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLW 132 (199)
T ss_pred HHHHHHHHHHcc-----CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhh
Confidence 345555554332 233367999999999887776654 34556555543322222221211 234555555555
Q ss_pred CCCCCCCCceEEE
Q 009946 272 RLPYPSRSFELAH 284 (522)
Q Consensus 272 ~lpf~d~sFDlVv 284 (522)
...+.+-.+-+|+
T Consensus 133 K~dl~dy~~vviF 145 (199)
T KOG4058|consen 133 KVDLRDYRNVVIF 145 (199)
T ss_pred hccccccceEEEe
Confidence 5555443344444
No 295
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.82 E-value=25 Score=34.02 Aligned_cols=92 Identities=22% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCCeEEEECCCC-chHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC-------CCCCCceEEEec
Q 009946 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------YPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp-------f~d~sFDlVv~s 286 (522)
...+||.+|+|. |..+..++... +..+...+.++...+.+++.+....+ +..... ...+.+|+|+..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 346899999985 55555555541 23444445555666666665532211 111111 123569999854
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
.. . ...+..+.+.|+++|.++....
T Consensus 209 ~~-~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VG-G------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC-C------HHHHHHHHHhcccCCEEEEEcc
Confidence 31 1 1457778899999999997664
No 296
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=65.58 E-value=14 Score=39.70 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=44.6
Q ss_pred HHcCCCeEEEEeCCCCCC--CCCCCceEEEeccccccchhhh--HHHHHHHHHhCCCCeEEEEEe
Q 009946 257 LERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 257 ~~rg~~~~~~~~d~~~lp--f~d~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~ 317 (522)
+++-..+.++..++.+.- .++++||.++.+. ...|+++. .+.+.++.|.++|||++++-.
T Consensus 271 r~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D-~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 271 RARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSD-HMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred hcCCCeEEEEeccHHHHHHhCCCCCeeEEEecc-hhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 333345667766644432 4578999999887 68888664 578999999999999999855
No 297
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.41 E-value=26 Score=36.77 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=61.5
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC---------CCCCCceEEE
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------YPSRSFELAH 284 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp---------f~d~sFDlVv 284 (522)
+.+.+||=+|+|.=.+...+.-+-.-+.++...|+.+..++.|++-|.............. +....||..+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 3457899999996444444433323455677778899999999998766544333222111 2224478877
Q ss_pred eccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
-.. .+ +..++.....||.||.+++..
T Consensus 248 dCs-G~------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 248 DCS-GA------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred Ecc-Cc------hHHHHHHHHHhccCCEEEEec
Confidence 322 12 346777788999999988876
No 298
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=65.04 E-value=33 Score=35.42 Aligned_cols=89 Identities=18% Similarity=0.096 Sum_probs=53.1
Q ss_pred CCCeEEEECCC-CchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 215 NIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
...+||=.|+| .|.++..+++. .+..+...+.++...+.+++.|....+. ..+. ..+.+|+++-... .
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~-~--- 233 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAP-A--- 233 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHhCCceecc---cccc--CcccceEEEECCC-c---
Confidence 34679989975 33444555543 2333444455667778888877643322 1111 1235887653221 1
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 294 QRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
...+....++|++||++++..
T Consensus 234 ---~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 ---GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ---HHHHHHHHHhhCCCcEEEEEe
Confidence 246888889999999998866
No 299
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=63.22 E-value=38 Score=34.37 Aligned_cols=94 Identities=17% Similarity=0.122 Sum_probs=52.0
Q ss_pred CCCeEEEECCC-CchHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCCCC----CCCCCCceEEEeccc
Q 009946 215 NIRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCSRC 288 (522)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~~l----pf~d~sFDlVv~s~~ 288 (522)
...+||-+|+| .|..+..++... ++. +.....++.....+++.+.. .+...+.... ....+.+|+|+....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~~~~ 235 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIEATG 235 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEECCC
Confidence 34679999864 244445555442 222 23234455566666666653 2221111110 113356999984321
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
....+.++.+.|+++|+++....
T Consensus 236 -------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEec
Confidence 12478888999999999987653
No 300
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.14 E-value=18 Score=37.49 Aligned_cols=126 Identities=12% Similarity=0.204 Sum_probs=67.4
Q ss_pred EEEECCCCchHHHHHhhCCCccccc-CcccccHHHHHHHHHcCCCeEEEEeCCCCCCCC-CCCceEEEecc-----ccc-
Q 009946 219 VLDVGCGVASFGAYLLSHDIIAMSL-APNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSR-----CRI- 290 (522)
Q Consensus 219 VLDIGCGtG~~a~~La~~~v~gvdi-s~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~-d~sFDlVv~s~-----~~l- 290 (522)
|+|+-||.|.+..-|.+.. +++ ...|+.+...+.-+..... .+...|+.++... -..+|+++.+. +..
T Consensus 1 vidLF~G~GG~~~Gl~~aG---~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag 76 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG---FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAG 76 (315)
T ss_pred CEEEecCccHHHHHHHHcC---CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhc
Confidence 5899999999998887663 333 3356666665555544333 3445566555421 12489998632 000
Q ss_pred --cchhhh-HHHHHHHHHhC---CCCeEEEEEe-CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecc
Q 009946 291 --DWLQRD-GILLLELDRLL---RPGGYFVYSS-PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (522)
Q Consensus 291 --~~~~d~-~~~L~ei~RvL---kPGG~lvis~-P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~ 351 (522)
.-..+. ..++.++.|++ +|. .+++-. +..... .....+..+...++.+||.+....-.
T Consensus 77 ~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~--~~~~~~~~i~~~l~~~GY~v~~~~l~ 141 (315)
T TIGR00675 77 KRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSH--DKGRTFKVIIETLEELGYKVYYKVLN 141 (315)
T ss_pred ccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhc--ccchHHHHHHHHHHhCCCEEEEEEEc
Confidence 001122 23444444444 775 233221 111111 11234677788889999988655444
No 301
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=62.82 E-value=18 Score=32.49 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=39.3
Q ss_pred CCceEEEeccccccchhhh--HHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q 009946 278 RSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (522)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~ 350 (522)
..||+|+--...-.-.++. ..++.++.|+++|||.+.-.+- -..+++-+..+||.+.+..+
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~------------a~~Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS------------AGAVRRALQQAGFEVEKVPG 111 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------BHHHHHHHHHCTEEEEEEE-
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec------------hHHHHHHHHHcCCEEEEcCC
Confidence 5689888432111111222 6799999999999999885221 12578889999999886654
No 302
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=62.39 E-value=33 Score=35.00 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=52.4
Q ss_pred CCeEEEECCCC-chHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeC--CCCCCCCCCCceEEEecccccc
Q 009946 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLG--TKRLPYPSRSFELAHCSRCRID 291 (522)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d--~~~lpf~d~sFDlVv~s~~~l~ 291 (522)
..+||-.|||. |..+..+++.. ++ .+...+.++.....+++.+....+...+ ...+....+.+|+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g--- 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG--- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC---
Confidence 46788888764 55555565542 33 3344455566666666655422111100 1112212234899984321
Q ss_pred chhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.++.+.|+++|.++...
T Consensus 241 ----~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 ----APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEEe
Confidence 1246788899999999999754
No 303
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=61.65 E-value=16 Score=40.63 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=58.3
Q ss_pred CCCeEEEECCCCc-hHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCC---------------------
Q 009946 215 NIRNVLDVGCGVA-SFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR--------------------- 272 (522)
Q Consensus 215 ~~~~VLDIGCGtG-~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~--------------------- 272 (522)
.+.+||=+|+|.- ..+..++.. .+..+...|.+...++.+++.|.. +...+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~lGa~--~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQSMGAE--FLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCe--EEeccccccccccccceeecCHHHHHHHH
Confidence 4578999999965 444444443 133344456677777777765543 22222111
Q ss_pred --CCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEE
Q 009946 273 --LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (522)
Q Consensus 273 --lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi 315 (522)
++-.-..+|+|++.- .+.-.+.+.-+.+++.+.+|||+.++-
T Consensus 239 ~~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111124599998665 455545555678899999999999873
No 304
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=58.22 E-value=18 Score=35.24 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=63.3
Q ss_pred CCCCeEEEECCCCchHHHHHhh--------CCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCC------CCCC
Q 009946 214 GNIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY------PSRS 279 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~--------~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf------~d~s 279 (522)
.+++.|+++|.-.|..+.+.+. ..|.++|++-....++.++ -+.+.++.++..+... -.+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 3457899999988876666553 2566777766555544432 4567777776544321 1122
Q ss_pred ceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 280 FDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+--|+.....-|+....-..|+-..++|..|-|+++.+.
T Consensus 143 y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 143 YPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred CCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 223433333466666666778888999999999998764
No 305
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=58.12 E-value=37 Score=35.18 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccccCccc---ccHHHHHHHHHcCCCeEEEEeCCCCC--CCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPND---VHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvdis~~D---is~a~i~~A~~rg~~~~~~~~d~~~l--pf~d~sFDlVv~s~~~ 289 (522)
..+||=+|+| .|.++..+++.. +..+...+ .++...+.+++.|... .....+++ ....+.||+|+-...
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC-
Confidence 4678988876 345566665541 22333222 3566777888776542 11111110 001245898884321
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.+..++|++||.+++..
T Consensus 248 ------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 ------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred ------CHHHHHHHHHHccCCcEEEEEe
Confidence 1236888999999999998765
No 306
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=58.04 E-value=16 Score=39.18 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=25.3
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHH
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQ 254 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~ 254 (522)
.....|+|+|.|.|.++..|.=. .++.+.++|-++....
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ 190 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVE 190 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHH
Confidence 34567999999999999999743 1333334444444433
No 307
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=57.73 E-value=41 Score=34.72 Aligned_cols=118 Identities=21% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCchHH--HHHhhC--CCcccccCcccccHHHHHH----HHHcCCC-eEEEEeCCCCCCCC---CCCceE
Q 009946 215 NIRNVLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQF----ALERGIP-STLGVLGTKRLPYP---SRSFEL 282 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a--~~La~~--~v~gvdis~~Dis~a~i~~----A~~rg~~-~~~~~~d~~~lpf~---d~sFDl 282 (522)
.++.|+=+| -.-.++ .+|... .+..+ |+.+..+++ |++.|.+ +...+.|++. |+| .+.||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVv-----DIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVV-----DIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEE-----echHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCe
Confidence 346799999 333333 333322 34444 555665554 5566765 6667777543 333 367999
Q ss_pred EEeccccccchhhhHHHHHHHHHhCCCC---eEEEEEeCCCCCCChhHHHHHHHHHH-HHHhcCcEEEE
Q 009946 283 AHCSRCRIDWLQRDGILLLELDRLLRPG---GYFVYSSPEAYAHDPENRRIWNAMYD-LLKSMCWKIVS 347 (522)
Q Consensus 283 Vv~s~~~l~~~~d~~~~L~ei~RvLkPG---G~lvis~P~~~~~~~e~~~~~~~l~~-l~~~~g~~~v~ 347 (522)
.+.-. .+-+.....++..=...||.- |+|.++.. +.....|.++++ +...+|+.+..
T Consensus 225 fiTDP--peTi~alk~FlgRGI~tLkg~~~aGyfgiT~r------essidkW~eiQr~lIn~~gvVITd 285 (354)
T COG1568 225 FITDP--PETIKALKLFLGRGIATLKGEGCAGYFGITRR------ESSIDKWREIQRILINEMGVVITD 285 (354)
T ss_pred eecCc--hhhHHHHHHHHhccHHHhcCCCccceEeeeec------cccHHHHHHHHHHHHHhcCeeeHh
Confidence 87432 333444456777767777766 88988653 334567999999 88999987654
No 308
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=56.06 E-value=42 Score=34.89 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=53.4
Q ss_pred CCCeEEEECCC-CchHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCCCC-----C-CCCCCceEEEec
Q 009946 215 NIRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~~l-----p-f~d~sFDlVv~s 286 (522)
...+||=.|+| .|.++..+++. .+.. +...+.++...+.+++.|....+.. ...+. . .....+|+|+-.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~-~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWAREFGATHTVNS-SGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCceEEcC-CCcCHHHHHHHHhCCCCCCEEEEC
Confidence 34678888874 23444555543 2332 4445667777888887775322211 11111 0 122358988732
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
. - . ...+.+..+.|++||++++..
T Consensus 253 ~--g----~-~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 253 V--G----R-PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred C--C----C-HHHHHHHHHHhccCCEEEEEC
Confidence 2 1 1 235777888999999999865
No 309
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.31 E-value=12 Score=41.24 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred CCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc---C-CC--eEEEEeCCC----CCCCCCCCceEEE
Q 009946 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---G-IP--STLGVLGTK----RLPYPSRSFELAH 284 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r---g-~~--~~~~~~d~~----~lpf~d~sFDlVv 284 (522)
+.-+|||.=|++|.-++..+..-.-..++...|.++..+...++. + .. +.-...|+. ..+-.+..||+|.
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 346799999999987777765422245666778888777755543 1 11 122233322 2233357899997
Q ss_pred eccccccchhhhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
. -.| ..+..+|..+.+.++.||.+.++..+
T Consensus 189 L----DPy-Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 189 L----DPY-GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred c----CCC-CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 2 222 23457999999999999999998753
No 310
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=55.01 E-value=2.4e+02 Score=28.46 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=58.5
Q ss_pred CCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCC-CCC--CCCCCce----EE
Q 009946 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTK-RLP--YPSRSFE----LA 283 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~-~lp--f~d~sFD----lV 283 (522)
...|+.+|||-=..+..|... .+.-++++..++-+...+...+. ..+..++..|+. .+. +....|| .+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 356999999988777777533 34444444333322222222222 223455555543 110 1111222 34
Q ss_pred Eeccccccchhhh--HHHHHHHHHhCCCCeEEEEEeC
Q 009946 284 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 284 v~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvis~P 318 (522)
+...+++.|++.. ..+|..+.+...||+.+++...
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 4455678887554 5699999999889999998653
No 311
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=54.89 E-value=24 Score=26.55 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCcEEEEEecceEEEeccCCc
Q 009946 331 WNAMYDLLKSMCWKIVSKKDQTVIWAKPISN 361 (522)
Q Consensus 331 ~~~l~~l~~~~g~~~v~~~~~~~iw~Kp~~~ 361 (522)
|+++.++++++||......+.-.+|.+|...
T Consensus 1 ~~el~k~L~~~G~~~~r~~GSH~~~~~~~~~ 31 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQKGSHHIFRHPGGR 31 (56)
T ss_dssp -HHHHHHHHHTT-EEEEEETTEEEEE-TTS-
T ss_pred ChHHHHHHHHCCCEEecCCCCEEEEEeCCCC
Confidence 6789999999999999888888889888765
No 312
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=54.85 E-value=11 Score=41.21 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCCCeEEEECCCCc--hHHHHHhhCCCcccccCcccccHHHHHHHHHc--C-C---CeEEE--EeCCCCCCCC-CCCceE
Q 009946 214 GNIRNVLDVGCGVA--SFGAYLLSHDIIAMSLAPNDVHENQIQFALER--G-I---PSTLG--VLGTKRLPYP-SRSFEL 282 (522)
Q Consensus 214 ~~~~~VLDIGCGtG--~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r--g-~---~~~~~--~~d~~~lpf~-d~sFDl 282 (522)
-.+..++|+|.|.| ..++.+..+. +--.++-+|.+.+|....... + . ...+. +.--..+|.. .+.||+
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceee
Confidence 34567889988766 4444444331 112334446666666555432 1 1 01111 1123445643 345999
Q ss_pred EEeccccccchhhhH---HH-HHHHHHhCCCCeEEEEEeCCC
Q 009946 283 AHCSRCRIDWLQRDG---IL-LLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 283 Vv~s~~~l~~~~d~~---~~-L~ei~RvLkPGG~lvis~P~~ 320 (522)
|+|++. +++..+.. .. -.-..+..++||+++++.+..
T Consensus 278 vi~ah~-l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 278 VICAHK-LHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred EEeeee-eeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999984 55544432 23 334456778999999987654
No 313
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=54.23 E-value=68 Score=32.61 Aligned_cols=93 Identities=9% Similarity=0.064 Sum_probs=54.9
Q ss_pred CCCeEEEECC--CCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC-----CCCCCceEEEecc
Q 009946 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSR 287 (522)
Q Consensus 215 ~~~~VLDIGC--GtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp-----f~d~sFDlVv~s~ 287 (522)
...+||=.|. |.|.++..+++.. +..+.....++...+.+++.|....+...+...+. ...+.+|+|+-..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 3467888884 4667777777652 33444445566677778776654322211111110 1124689887322
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
. ...+.+..++|++||+++...
T Consensus 216 ---G-----~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 216 ---G-----GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred ---C-----HHHHHHHHHHhCcCcEEEEec
Confidence 1 134678899999999999754
No 314
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=52.86 E-value=22 Score=30.26 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=46.1
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhhh
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~ 296 (522)
.+|| +-||+|..+..++. .+.+.++++|.++.+...+..+++-....+|+|+.+. ..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p-------qi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP-------QV 60 (95)
T ss_pred cEEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc-------hH
Confidence 3566 66999965555543 3446778888888887777655542234689998654 12
Q ss_pred HHHHHHHHHhCCCCeEEE
Q 009946 297 GILLLELDRLLRPGGYFV 314 (522)
Q Consensus 297 ~~~L~ei~RvLkPGG~lv 314 (522)
...+.++...+.+-|.=+
T Consensus 61 ~~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 61 AYMLPDLKKETDKKGIPV 78 (95)
T ss_pred HHHHHHHHHHhhhcCCCE
Confidence 235666666665544333
No 315
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=52.62 E-value=46 Score=33.31 Aligned_cols=92 Identities=20% Similarity=0.125 Sum_probs=52.0
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCC----CCCCCCCCCceEEEecccc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT----KRLPYPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~----~~lpf~d~sFDlVv~s~~~ 289 (522)
..+||=+|+| .|.++..+++. .+.. +...+.++...+.+++.|....+...+. ..+. ....+|+|+-...
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~--~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~~G- 196 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAA--AGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEFSG- 196 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEECCC-
Confidence 4678888875 33444445543 1332 3333566677788887765332211110 0011 1235898873321
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.++.+.|+++|++++..
T Consensus 197 ------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 197 ------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ------ChHHHHHHHHHhcCCCEEEEec
Confidence 1246888899999999999765
No 316
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=52.47 E-value=65 Score=32.80 Aligned_cols=100 Identities=20% Similarity=0.279 Sum_probs=57.4
Q ss_pred CCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHH-----HHHc-CCCeEEEEeCCC----CCCCCCCCceE
Q 009946 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQF-----ALER-GIPSTLGVLGTK----RLPYPSRSFEL 282 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~-----A~~r-g~~~~~~~~d~~----~lpf~d~sFDl 282 (522)
.-+.+|+|.|+..=+..|.+. .-....+.+.|++...++. .++. +.++.-..++.+ .+| ...--+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 467999999999777776642 2223455566666655543 2222 334443444422 233 222233
Q ss_pred EEecccccc-chhhh-HHHHHHHHHhCCCCeEEEEEe
Q 009946 283 AHCSRCRID-WLQRD-GILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 283 Vv~s~~~l~-~~~d~-~~~L~ei~RvLkPGG~lvis~ 317 (522)
++.-.+.+. +.++. ..+|..+...|+||-+|++-+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 332222333 23333 568999999999999999865
No 317
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=52.01 E-value=67 Score=31.57 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=51.2
Q ss_pred CCCeEEEECCCC-chHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
+..+||=.|+|. |..+..++... +.. +...+.++...+.+++.+..-.+. ....-....+.+|+|+... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~d~vl~~~--~-- 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPADPVA--ADTADEIGGRGADVVIEAS--G-- 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCCcccc--ccchhhhcCCCCCEEEEcc--C--
Confidence 346788888753 44444455431 333 444455666667777766111111 1111011234689988432 1
Q ss_pred hhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 293 LQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.+..+.|+++|.++...
T Consensus 169 ---~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ---SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ---ChHHHHHHHHHhcCCcEEEEEe
Confidence 1236788899999999998755
No 318
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=51.18 E-value=49 Score=34.23 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=49.0
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
..+||=+||| .|.++..++.+..-+..+...+.++..++.+++.+. .... ..+. ....+|+|+-.-. . .
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~--~~~~---~~~~-~~~g~d~viD~~G--~--~ 233 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE--TYLI---DDIP-EDLAVDHAFECVG--G--R 233 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc--eeeh---hhhh-hccCCcEEEECCC--C--C
Confidence 4689999986 334444444321011233334556666677765322 1111 1111 1124898883221 0 0
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEe
Q 009946 295 RDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.....+.+..++|++||++++..
T Consensus 234 ~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 234 GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ccHHHHHHHHHhCcCCcEEEEEe
Confidence 12347888999999999999765
No 319
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=50.36 E-value=59 Score=33.22 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=51.6
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCC--CC-C-CCCCCceEEEecccc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTK--RL-P-YPSRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~--~l-p-f~d~sFDlVv~s~~~ 289 (522)
..+||=+|+| .|.++..+++. .+.. +...+.++...+.+++.|....+...+.. .+ . .....+|+|+-...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARA--LGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 4678888764 23344444443 2333 44445667777888777753222111100 01 0 12236999983321
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+....+.|+++|.+++..
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1235677889999999999765
No 320
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=49.64 E-value=56 Score=33.30 Aligned_cols=84 Identities=25% Similarity=0.182 Sum_probs=46.8
Q ss_pred CeEEEECCC-CchHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 217 RNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 217 ~~VLDIGCG-tG~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
.++|=+||| .|.++..++... +.. +...+..+..++.+.+.. ..+.... ....||+|+-...
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a~~~~------~i~~~~~--~~~g~Dvvid~~G------ 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGATGYE------VLDPEKD--PRRDYRAIYDASG------ 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhhhhcc------ccChhhc--cCCCCCEEEECCC------
Confidence 568888875 455666666531 221 222244455555554321 1121111 1245899884331
Q ss_pred hhHHHHHHHHHhCCCCeEEEEEe
Q 009946 295 RDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+..+.+.|++||++++..
T Consensus 210 -~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 -DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -CHHHHHHHHHhhhcCcEEEEEe
Confidence 1246788889999999999865
No 321
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=49.18 E-value=1.6e+02 Score=31.51 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=54.4
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccc-cHHHHHHHHHcCCCeE-EEEeCCCCCCCCCCCceEEEeccccccchhh
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDV-HENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Di-s~a~i~~A~~rg~~~~-~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d 295 (522)
+||=|+=.-|.++..|+...++.+ +..-+ ..+..+.++..+.+.. +...+. .-+++ +.+|+|+.-. ---...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~~~--PK~~~~ 120 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLIKV--PKTLAL 120 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEEEe--CCCHHH
Confidence 599999999999999986655432 11112 2233333344454422 222222 11233 4599987421 111223
Q ss_pred hHHHHHHHHHhCCCCeEEEEEe
Q 009946 296 DGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 296 ~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.+..|..+.++|.||+.++...
T Consensus 121 l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 121 LEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHhhCCCCCEEEEEE
Confidence 3568889999999999987655
No 322
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=49.01 E-value=54 Score=34.18 Aligned_cols=70 Identities=16% Similarity=-0.018 Sum_probs=46.3
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc----CCCeEEEEeCCCCCC-----CCCCCceEEEec
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP-----YPSRSFELAHCS 286 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r----g~~~~~~~~d~~~lp-----f~d~sFDlVv~s 286 (522)
...++|.=+|.|.-+..++++-- ...+.+.|..+.+++.++++ +.++.+...+..++. ...+++|.|+.-
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEe
Confidence 35799999999999999887521 13455667777777777664 225666666654432 123568888764
No 323
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=48.92 E-value=28 Score=38.00 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHH
Q 009946 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE 258 (522)
Q Consensus 194 ~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~ 258 (522)
+|...|...+......+ ...-..|||||+|||.++.+.... .+++++ +-..|...|++
T Consensus 47 ky~~gi~~tIte~kh~~--~~gkv~vLdigtGTGLLSmMAvragaD~vtA~E-----vfkPM~d~ark 107 (636)
T KOG1501|consen 47 KYRLGIEKTITEPKHVL--DIGKVFVLDIGTGTGLLSMMAVRAGADSVTACE-----VFKPMVDLARK 107 (636)
T ss_pred HHHHHHHHHhcccceec--cCceEEEEEccCCccHHHHHHHHhcCCeEEeeh-----hhchHHHHHHH
Confidence 44445555554332111 122246999999999988877654 344444 44455555543
No 324
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=48.11 E-value=43 Score=35.73 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHc-----CCCeEEEEeCCCCCCCC-CCCceEEEecccc
Q 009946 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYP-SRSFELAHCSRCR 289 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r-----g~~~~~~~~d~~~lpf~-d~sFDlVv~s~~~ 289 (522)
..+|||.=+|+|.=+...+.. ...+.+...|+++...+.++++ +........|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E-~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVE-TGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhh-cCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe-----
Confidence 478999999999877776643 1122566778888888877654 22334444443333221 25688874
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
+.=.-.+..++..+.+.+|.||++.++..+
T Consensus 127 iDPFGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 127 IDPFGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred cCCCCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 222334567999999999999999998753
No 325
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=47.88 E-value=55 Score=34.22 Aligned_cols=92 Identities=18% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC-----CCCCCceEEEeccc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp-----f~d~sFDlVv~s~~ 288 (522)
..+||=+|+| .|.++..++.. .+. .+...+.++...+.+++.|....+...+ .++. ...+.+|+|+-...
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVA--AGASQVVAVDLNEDKLALARELGATATVNAGD-PNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHHcCCceEeCCCc-hhHHHHHHHHhCCCCCEEEECCC
Confidence 4567778875 23455555543 233 2444566777888888777543222111 1100 11235898883321
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+....+.|++||.+++..
T Consensus 269 -------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 269 -------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEc
Confidence 1246778889999999999765
No 326
>PRK10742 putative methyltransferase; Provisional
Probab=47.49 E-value=63 Score=32.70 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=38.0
Q ss_pred eEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHc-------C----CCeEEEEeCCCCC-CCCCCCceEE
Q 009946 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-------G----IPSTLGVLGTKRL-PYPSRSFELA 283 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~r-------g----~~~~~~~~d~~~l-pf~d~sFDlV 283 (522)
+|||.=+|.|..+..++.+ .|+.++-++.- .+.++...++ + .++.+...|..++ .-...+||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~v--aalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVV--AALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHH--HHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 7999999999999999876 34444433321 1112222222 1 1355555663222 2122479999
Q ss_pred Eecc
Q 009946 284 HCSR 287 (522)
Q Consensus 284 v~s~ 287 (522)
+.--
T Consensus 169 YlDP 172 (250)
T PRK10742 169 YLDP 172 (250)
T ss_pred EECC
Confidence 9654
No 327
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=47.43 E-value=86 Score=32.60 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=54.9
Q ss_pred CCCeEEEECC--CCchHHHHHhhCCCcccccCcccccHHHHHHHH-HcCCCeEEEEeCCCCCC-----CCCCCceEEEec
Q 009946 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLP-----YPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGC--GtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~-~rg~~~~~~~~d~~~lp-----f~d~sFDlVv~s 286 (522)
...+||=.|+ |.|.++..++... +..+...+.++...+.++ +.|....+...+...+. ...+.+|+|+-.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 3467998887 3677777777652 344444455666666665 45654332211100110 112358988843
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.. ...+....+.|++||++++..
T Consensus 236 vG--------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 VG--------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CC--------HHHHHHHHHHhccCCEEEEEC
Confidence 21 236788899999999999765
No 328
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=46.71 E-value=49 Score=33.41 Aligned_cols=128 Identities=10% Similarity=0.146 Sum_probs=70.4
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC---CCCCCceEEEecc-----cc
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSR-----CR 289 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp---f~d~sFDlVv~s~-----~~ 289 (522)
+++|+=||.|.+..-|.+..+. -+...|+.+.+.+.-+.... .....|+..+. ++. .+|+++.+. +.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ 76 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSI 76 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTST
T ss_pred cEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEec
Confidence 5999999999999888876421 12344566666555444433 66677776665 443 599998732 10
Q ss_pred cc---chhhh-HH---HHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecce
Q 009946 290 ID---WLQRD-GI---LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (522)
Q Consensus 290 l~---~~~d~-~~---~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~~ 352 (522)
.. ...|. .. -+.++.+.++|.-.++=-++.... ......++.+...++++||.+....-..
T Consensus 77 ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~--~~~~~~~~~i~~~l~~lGY~v~~~vlna 144 (335)
T PF00145_consen 77 AGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLS--SKNGEVFKEILEELEELGYNVQWRVLNA 144 (335)
T ss_dssp TSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGT--GGGHHHHHHHHHHHHHTTEEEEEEEEEG
T ss_pred cccccccccccchhhHHHHHHHhhccceEEEecccceeec--cccccccccccccccccceeehhccccH
Confidence 10 11122 11 334445566885544422233221 1222557888888999999887554443
No 329
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=46.11 E-value=4.5 Score=31.31 Aligned_cols=10 Identities=20% Similarity=0.477 Sum_probs=7.9
Q ss_pred cccccccccc
Q 009946 505 IGTVHDCFFR 514 (522)
Q Consensus 505 ig~~hdwce~ 514 (522)
+|-+|.|||.
T Consensus 57 vgqfh~wceq 66 (68)
T PF13051_consen 57 VGQFHEWCEQ 66 (68)
T ss_pred HHHHHHHHhh
Confidence 3679999985
No 330
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=46.11 E-value=44 Score=28.36 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=47.2
Q ss_pred ECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHH
Q 009946 222 VGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL 301 (522)
Q Consensus 222 IGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ 301 (522)
+-||+|..+..+++ .+.+.++++|.++.+...+..+..-....+|+|+++. .....+.
T Consensus 4 ~~Cg~G~sTS~~~~---------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P-------qv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVK---------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP-------QVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh-------hHHHHHH
Confidence 45888866555543 2346677888888887777655542235699998654 2233566
Q ss_pred HHHHhCCCCeE-EEEEeCCCC
Q 009946 302 ELDRLLRPGGY-FVYSSPEAY 321 (522)
Q Consensus 302 ei~RvLkPGG~-lvis~P~~~ 321 (522)
++.+.+.+.+. +.+..|..|
T Consensus 62 ~i~~~~~~~~~pv~~I~~~~Y 82 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDMMDY 82 (96)
T ss_pred HHHHHhccCCCcEEEcChHhc
Confidence 77765544444 555555444
No 331
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.51 E-value=33 Score=29.65 Aligned_cols=77 Identities=18% Similarity=0.095 Sum_probs=51.9
Q ss_pred EEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhhhHH
Q 009946 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298 (522)
Q Consensus 219 VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~ 298 (522)
|| +-||.|..+..+++ .+.+.++++|.++.+......+++-....+|+|+... ...-
T Consensus 3 Il-l~C~~GaSSs~la~---------------km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P-------Qv~~ 59 (99)
T cd05565 3 VL-VLCAGGGTSGLLAN---------------ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP-------QMAS 59 (99)
T ss_pred EE-EECCCCCCHHHHHH---------------HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC-------hHHH
Confidence 44 55788855555544 3557788899998888777666654445689888543 2334
Q ss_pred HHHHHHHhCCCCeEEEEEeC
Q 009946 299 LLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 299 ~L~ei~RvLkPGG~lvis~P 318 (522)
.+.++...+.+-|.-+...+
T Consensus 60 ~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 60 YYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHhhhcCCCEEEeC
Confidence 67888888888877665443
No 332
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=45.47 E-value=2.1e+02 Score=28.84 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=42.7
Q ss_pred CeEEEEeCC-CCCC-CCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHH
Q 009946 262 PSTLGVLGT-KRLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 339 (522)
Q Consensus 262 ~~~~~~~d~-~~lp-f~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~ 339 (522)
++.++.+.. +.+| .+...+-+++.- ..+-+.....|..++..|.|||+++|-+-. . +.- -+.+.+..+
T Consensus 158 ~v~~vkG~F~dTLp~~p~~~IAll~lD---~DlYesT~~aLe~lyprl~~GGiIi~DDY~---~-~gc---r~AvdeF~~ 227 (248)
T PF05711_consen 158 NVRFVKGWFPDTLPDAPIERIALLHLD---CDLYESTKDALEFLYPRLSPGGIIIFDDYG---H-PGC---RKAVDEFRA 227 (248)
T ss_dssp TEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESSTT---T-HHH---HHHHHHHHH
T ss_pred cEEEECCcchhhhccCCCccEEEEEEe---ccchHHHHHHHHHHHhhcCCCeEEEEeCCC---C-hHH---HHHHHHHHH
Confidence 567777763 3344 233444444421 122334467899999999999999995522 2 222 234455566
Q ss_pred hcCcE--EEEEecceEEEec
Q 009946 340 SMCWK--IVSKKDQTVIWAK 357 (522)
Q Consensus 340 ~~g~~--~v~~~~~~~iw~K 357 (522)
+.|.. +.......+.|+|
T Consensus 228 ~~gi~~~l~~id~~~v~w~k 247 (248)
T PF05711_consen 228 EHGITDPLHPIDWTGVYWRK 247 (248)
T ss_dssp HTT--S--EE-SSS-EEEE-
T ss_pred HcCCCCccEEecCceEEEec
Confidence 66653 3322233456765
No 333
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=45.41 E-value=46 Score=35.33 Aligned_cols=104 Identities=19% Similarity=0.109 Sum_probs=59.7
Q ss_pred CCCeEEEECCCCchHHHHHh--hCCCcccccCcccccH---HH---HHHHHHcCC---CeEEEEeCCCCCCCC-CCCceE
Q 009946 215 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHE---NQ---IQFALERGI---PSTLGVLGTKRLPYP-SRSFEL 282 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~~~v~gvdis~~Dis~---a~---i~~A~~rg~---~~~~~~~d~~~lpf~-d~sFDl 282 (522)
++.-|+|-=.|||++...-+ +..|.|.||+...+.. .. ...-++.|. .+.+..+|...-|.- ...||.
T Consensus 208 pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDa 287 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDA 287 (421)
T ss_pred CCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeE
Confidence 34679999999998765544 3466777776665541 11 111122232 234556666555543 356999
Q ss_pred EEecc-----------------------ccccchhhh---------HHHHHHHHHhCCCCeEEEEEeC
Q 009946 283 AHCSR-----------------------CRIDWLQRD---------GILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 283 Vv~s~-----------------------~~l~~~~d~---------~~~L~ei~RvLkPGG~lvis~P 318 (522)
|+|-- ..-.|.+.. ..+|.-..|.|.-||++++-.|
T Consensus 288 IvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 288 IVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred EEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 99910 001111111 2366677788888888888665
No 334
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=45.33 E-value=7.8 Score=40.13 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=75.1
Q ss_pred cccccceec--CCeeecCCCCCCCCccHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHH-HHhhC---CCcc
Q 009946 167 SDQHWMVVN--GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA-YLLSH---DIIA 240 (522)
Q Consensus 167 ~~q~W~~~~--g~~~~Fpgg~~~F~~ga~~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~-~La~~---~v~g 240 (522)
++..|+... |-.+.|....++|..|.-.-...+..+.. ....|.|+=+|.|.|+. .|..+ .|.+
T Consensus 154 Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc----------~~eviVDLYAGIGYFTlpflV~agAk~V~A 223 (351)
T KOG1227|consen 154 GDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC----------DGEVIVDLYAGIGYFTLPFLVTAGAKTVFA 223 (351)
T ss_pred ccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc----------ccchhhhhhcccceEEeehhhccCccEEEE
Confidence 446688654 44566667778888886543333333322 23679999999999988 55433 5777
Q ss_pred cccCcccccHHHHHHHHHcCCC--eEEEEeCCCCCCCCCCCceEEEeccccccchhhhHHHHHHHHHhCCCCeE
Q 009946 241 MSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGY 312 (522)
Q Consensus 241 vdis~~Dis~a~i~~A~~rg~~--~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~ 312 (522)
++..+-.+ ++.++.++..+.. ..+..+ ..+.+-++...|-|... .++.-++-.--+..+|||.|-
T Consensus 224 ~EwNp~sv-EaLrR~~~~N~V~~r~~i~~g-d~R~~~~~~~AdrVnLG-----LlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 224 CEWNPWSV-EALRRNAEANNVMDRCRITEG-DNRNPKPRLRADRVNLG-----LLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred EecCHHHH-HHHHHHHHhcchHHHHHhhhc-cccccCccccchheeec-----cccccccchHHHHHHhhhcCC
Confidence 77776433 4444444443321 122222 34455556777877632 234444455566778887655
No 335
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=43.78 E-value=1e+02 Score=31.40 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=51.7
Q ss_pred CCeEEEECCCC-chHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCC----C--CCCCCCceEEEeccc
Q 009946 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----L--PYPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~----l--pf~d~sFDlVv~s~~ 288 (522)
..+||-.|+|. |..+..+++.. ++.+.....++...+..++.+....+. ..... + ..+...+|+++....
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELGADDTIN-VGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhCCCEEec-CcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 46789888763 56666666541 333333334555656666655322111 11111 1 013345899984321
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.++.+.|+++|.++...
T Consensus 237 -------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 -------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1246788899999999998654
No 336
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=42.10 E-value=90 Score=32.26 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=51.5
Q ss_pred CCCeEEEECCCC-chHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCC--CCCC-----C-CCCCce----
Q 009946 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT--KRLP-----Y-PSRSFE---- 281 (522)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~--~~lp-----f-~d~sFD---- 281 (522)
...+||=+|+|. |..+..++... +..+...+.++..++.+++.|....+...+. .++. + ....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 346899999853 45555555442 3344445667777788877765432221110 0000 0 112344
Q ss_pred EEE-eccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 282 LAH-CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 282 lVv-~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.|+ |.. ....+....++|++||++++..
T Consensus 244 ~v~d~~g--------~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 244 KIFECSG--------SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred EEEECCC--------ChHHHHHHHHHHhcCCeEEEEC
Confidence 454 221 1246677788999999999865
No 337
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=41.85 E-value=89 Score=27.20 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=51.0
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCC--CCCCceEEEeccccccchhh
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY--PSRSFELAHCSRCRIDWLQR 295 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf--~d~sFDlVv~s~~~l~~~~d 295 (522)
+|| +-||.|..+..+++. +.+.++++|.++.+...+..+++- ....||+|++.. .
T Consensus 3 kIL-lvCg~G~STSlla~k---------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P-------Q 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK---------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP-------Q 59 (104)
T ss_pred EEE-EECCCchHHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh-------H
Confidence 355 569999766655543 346677888888887776655542 234589998653 2
Q ss_pred hHHHHHHHHHhCCCCeE-EEEEeCCCCC
Q 009946 296 DGILLLELDRLLRPGGY-FVYSSPEAYA 322 (522)
Q Consensus 296 ~~~~L~ei~RvLkPGG~-lvis~P~~~~ 322 (522)
..-.+.++...+.+.|. +.+..+..|.
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 23357777777766555 4444444443
No 338
>PRK10458 DNA cytosine methylase; Provisional
Probab=41.82 E-value=3.8e+02 Score=29.70 Aligned_cols=147 Identities=7% Similarity=0.108 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcC---CCeEEEEeCC
Q 009946 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGT 270 (522)
Q Consensus 194 ~y~~~l~~lL~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg---~~~~~~~~d~ 270 (522)
.....+.++++..... .....-+++|+=||.|.+..-+....+.. +...|+.+.+.+.-+... ........|+
T Consensus 68 ~~~~~~~~~~~~~~~~--~~~~~~~~iDLFsGiGGl~lGfe~aG~~~--v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI 143 (467)
T PRK10458 68 AEFAHLQTLLPKPPAH--HPHYAFRFIDLFAGIGGIRRGFEAIGGQC--VFTSEWNKHAVRTYKANWYCDPATHRFNEDI 143 (467)
T ss_pred HHHHHHHHhcccCccc--CcCCCceEEEeCcCccHHHHHHHHcCCEE--EEEEechHHHHHHHHHHcCCCCccceeccCh
Confidence 3344566666543221 12234689999999999988887653321 233355555444333321 2223333444
Q ss_pred CCCCCC-----------------CCCceEEEecc-----cccc------------chhh-hHHHHHHHHHh---CCCCeE
Q 009946 271 KRLPYP-----------------SRSFELAHCSR-----CRID------------WLQR-DGILLLELDRL---LRPGGY 312 (522)
Q Consensus 271 ~~lpf~-----------------d~sFDlVv~s~-----~~l~------------~~~d-~~~~L~ei~Rv---LkPGG~ 312 (522)
..+... -..+|+++.+. +... +..+ ...++.++.|+ ++|.-.
T Consensus 144 ~~i~~~~~~~~~~~~~~~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~f 223 (467)
T PRK10458 144 RDITLSHKEGVSDEEAAEHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIF 223 (467)
T ss_pred hhCccccccccchhhhhhhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCEE
Confidence 443210 12478887631 1000 0012 12354555554 466633
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q 009946 313 FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 313 lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
++=-++.... ......++.+.+.++++||.+.
T Consensus 224 vlENV~gl~s--~~~g~~f~~i~~~L~~lGY~v~ 255 (467)
T PRK10458 224 VLENVKNLKS--HDKGKTFRIIMQTLDELGYDVA 255 (467)
T ss_pred EEeCcHhhhc--ccccHHHHHHHHHHHHcCCeEE
Confidence 2211122211 1222457778888899999885
No 339
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=40.89 E-value=16 Score=24.35 Aligned_cols=19 Identities=42% Similarity=0.920 Sum_probs=16.2
Q ss_pred cCCCCCCCCCCcccCCCCC
Q 009946 120 RHCPPPERRYNCLVPPPKG 138 (522)
Q Consensus 120 r~Cp~~~~~~~Clvp~P~~ 138 (522)
-||||++-.++-+.|.|+.
T Consensus 5 a~~pppeislna~fptppa 23 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPPA 23 (32)
T ss_pred CCCCCCcceeccccCCChh
Confidence 6899988888999998863
No 340
>KOG2730 consensus Methylase [General function prediction only]
Probab=40.57 E-value=22 Score=35.51 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=39.6
Q ss_pred CCeEEEECCCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHc----CC--CeEEEEeCCCC----CCCCCCCceEE
Q 009946 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKR----LPYPSRSFELA 283 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~r----g~--~~~~~~~d~~~----lpf~d~sFDlV 283 (522)
...|+|.-||.|.-+...+-+ .|.++|+++ ..+..|++. |+ ++.|.++|..+ +.+....+|+|
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDP-----ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~v 169 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDP-----VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCV 169 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccH-----HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeee
Confidence 356999999999777776654 455665554 444455443 44 46778877433 33433345666
Q ss_pred Eec
Q 009946 284 HCS 286 (522)
Q Consensus 284 v~s 286 (522)
+.+
T Consensus 170 f~s 172 (263)
T KOG2730|consen 170 FLS 172 (263)
T ss_pred ecC
Confidence 644
No 341
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=40.46 E-value=1.5e+02 Score=31.06 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=58.4
Q ss_pred CeEEEECCCC-chHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCC-----CCCCC-CCceEEEecccc
Q 009946 217 RNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-----LPYPS-RSFELAHCSRCR 289 (522)
Q Consensus 217 ~~VLDIGCGt-G~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~-----lpf~d-~sFDlVv~s~~~ 289 (522)
.+|+=+|||+ |.++..+++. .-+..+...|.++..++.|++.+....+.....+. +.... ..||+++=...
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3899999995 6665555543 11234455588899999998853322221111110 01111 36999983321
Q ss_pred ccchhhhHHHHHHHHHhCCCCeEEEEEeCC
Q 009946 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (522)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvis~P~ 319 (522)
....+..+.+++||||.+++..-.
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 234899999999999999987643
No 342
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=40.13 E-value=1.4e+02 Score=25.34 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=52.0
Q ss_pred CCCchHHHHHhhC--CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC----CCCCCceEEEeccccccchhhhH
Q 009946 224 CGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHCSRCRIDWLQRDG 297 (522)
Q Consensus 224 CGtG~~a~~La~~--~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp----f~d~sFDlVv~s~~~l~~~~d~~ 297 (522)
||.|.++..+++. . .+.++...|..+...+.+++.+ ..+..+|..+.. ..-...|.|++... .....
T Consensus 4 ~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTD----DDEEN 76 (116)
T ss_dssp ES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHH
T ss_pred EcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccC----CHHHH
Confidence 5666777776643 1 1235555677777788888877 456666654422 12246788875542 11223
Q ss_pred HHHHHHHHhCCCCeEEEEEeC
Q 009946 298 ILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 298 ~~L~ei~RvLkPGG~lvis~P 318 (522)
..+....|-+-|...++....
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHCCCCeEEEEEC
Confidence 356667788888888887653
No 343
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=39.73 E-value=62 Score=30.62 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=24.0
Q ss_pred CCeEEEECCCCchHHHHHh--hCCCcccccCcccccHHHHHHHHH
Q 009946 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALE 258 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~v~gvdis~~Dis~a~i~~A~~ 258 (522)
...|||.=||+|+.+.... .++..|+ |+++...+.|.+
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l~R~~ig~-----E~~~~y~~~a~~ 231 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEELGRRYIGI-----EIDEEYCEIAKK 231 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHTT-EEEEE-----ESSHHHHHHHHH
T ss_pred ceeeehhhhccChHHHHHHHcCCeEEEE-----eCCHHHHHHhcC
Confidence 4789999999998776654 4445555 556666666653
No 344
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=39.22 E-value=1.3e+02 Score=31.25 Aligned_cols=124 Identities=11% Similarity=0.124 Sum_probs=68.4
Q ss_pred CeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCC---CCCCceEEEecccccc--
Q 009946 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRCRID-- 291 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf---~d~sFDlVv~s~~~l~-- 291 (522)
.+++|+=||.|.+..-+.......+ ...|+.+..++.-+.......+...|...+.. +...+|+++.+.---.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~--~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIV--FANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEE--EEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 5699999999998888877642222 23355555555444433324445455443332 1116899987421011
Q ss_pred ------chhhhH----HHHHHHHHhCCCCeEEEEEe-CCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q 009946 292 ------WLQRDG----ILLLELDRLLRPGGYFVYSS-PEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (522)
Q Consensus 292 ------~~~d~~----~~L~ei~RvLkPGG~lvis~-P~~~~~~~e~~~~~~~l~~l~~~~g~~~v 346 (522)
...|.. .-+.++...++| -.|++-- |..... ....|+.+.+.+++.||.+.
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~---~~~~~~~i~~~L~~~GY~~~ 143 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSS---KGQTFDEIKKELEELGYGVE 143 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhc---CchHHHHHHHHHHHcCCcch
Confidence 122221 235566667788 4444432 222111 23468899999999999733
No 345
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=39.19 E-value=1.2e+02 Score=31.11 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=49.4
Q ss_pred CCeEEEECCCC-chHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCC--CC--CCCCCCce-EEEeccc
Q 009946 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTK--RL--PYPSRSFE-LAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~--~l--pf~d~sFD-lVv~s~~ 288 (522)
..+||=.|+|. |.++..+++.. +.. +...+.++...+.+++.|....+...+.. .+ ......+| +|+-..
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~- 237 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA- 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC-
Confidence 46788888742 33444444431 332 33345566677777766643222111100 00 01223577 555221
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
- ....+.+..+.|++||.+++..
T Consensus 238 -G-----~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 238 -G-----VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred -C-----CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1247888899999999999875
No 346
>PLN02740 Alcohol dehydrogenase-like
Probab=38.73 E-value=1.1e+02 Score=32.21 Aligned_cols=94 Identities=15% Similarity=0.056 Sum_probs=52.3
Q ss_pred CCCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCCC-CC-----CCCCCCceEEEec
Q 009946 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-----PYPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~~-~l-----pf~d~sFDlVv~s 286 (522)
...+||=+|+| .|.++..+++. .+. .+...+.++...+.+++.|....+...+.. .+ ....+.+|+|+-.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 34678888875 23344444443 233 244446677778888877764332211100 01 0112258988843
Q ss_pred cccccchhhhHHHHHHHHHhCCCC-eEEEEEe
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPG-G~lvis~ 317 (522)
.. ....+....+.+++| |.+++..
T Consensus 276 ~G-------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 276 AG-------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CC-------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 21 124677778889997 9988765
No 347
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=38.33 E-value=70 Score=33.44 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=45.8
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccccCcccccHH-HHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHEN-QIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvdis~~Dis~a-~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
..+||=.|+| .|.++..+++.. +..+...+.+.. ....+++.|....+...+...+.-..+.+|+|+-...
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g----- 256 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS----- 256 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-----
Confidence 3567778875 344555555431 222222222222 2234455554322211111011100124788873321
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 294 QRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.+..+.|++||.++...
T Consensus 257 --~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 --AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred --CHHHHHHHHHHhcCCcEEEEeC
Confidence 1236778889999999999765
No 348
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=37.97 E-value=1.1e+02 Score=31.14 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=49.2
Q ss_pred CCCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCCCCC------CCCCCCceEEEec
Q 009946 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRL------PYPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~~~l------pf~d~sFDlVv~s 286 (522)
...+||-.|+| .|..+..+++.. +. .+...+.++...+.+++.+....+. .....+ -.+.+.+|+|+-.
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~--g~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLL--GAARIIAVDSNPERLDLAKEAGATDIIN-PKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHhCCcEEEc-CCcchHHHHHHHHcCCCCCcEEEEc
Confidence 34678887764 355555555542 21 2222244455555666555321111 111110 0123569988843
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.. ....+.++.+.|+++|+++...
T Consensus 244 ~g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 244 VG-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 21 1247888899999999998654
No 349
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=37.84 E-value=1.1e+02 Score=33.33 Aligned_cols=88 Identities=10% Similarity=-0.020 Sum_probs=51.2
Q ss_pred CCCeEEEECCCC-chHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
.+++|+=+|+|. |.....++.. .|..+...|.++.....|++.|.... +..+. . ..+|+|+....
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~~R~~~A~~~G~~~~----~~~e~-v--~~aDVVI~atG----- 266 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDPICALQAAMEGYEVM----TMEEA-V--KEGDIFVTTTG----- 266 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECChhhHHHHHhcCCEEc----cHHHH-H--cCCCEEEECCC-----
Confidence 357899999995 4444433332 13344445666666677777665221 11111 1 34799985431
Q ss_pred hhhHHHHH-HHHHhCCCCeEEEEEeC
Q 009946 294 QRDGILLL-ELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 294 ~d~~~~L~-ei~RvLkPGG~lvis~P 318 (522)
. ...+. +..+.+|+||.++....
T Consensus 267 -~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 267 -N-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred -C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 1 23444 45889999999988763
No 350
>PRK11524 putative methyltransferase; Provisional
Probab=37.52 E-value=1.2e+02 Score=30.92 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=28.0
Q ss_pred CCCeEEEECCCCchHHHHH--hhCCCcccccCcccccHHHHHHHHHc
Q 009946 215 NIRNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALER 259 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L--a~~~v~gvdis~~Dis~a~i~~A~~r 259 (522)
.+..|||-=||+|+.+..- .+|+..|+++ ++...+.|++|
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei-----~~~Y~~~a~~R 249 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGRKFIGIEI-----NSEYIKMGLRR 249 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCCCEEEEeC-----CHHHHHHHHHH
Confidence 4578999999999766544 4566777754 55566666666
No 351
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=37.50 E-value=1.2e+02 Score=30.42 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=54.2
Q ss_pred CCeEEEECC--CCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCC-----CCCCCCceEEEeccc
Q 009946 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGC--GtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~l-----pf~d~sFDlVv~s~~ 288 (522)
..+||=.|. |.|.++..++.. .+..+.....++...+.+++.|....+.. ...++ ....+.+|+|+-...
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~-~~~~~~~~v~~~~~~gvd~vld~~g 220 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKELGFDAVFNY-KTVSLEEALKEAAPDGIDCYFDNVG 220 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCCEEEeC-CCccHHHHHHHHCCCCcEEEEECCC
Confidence 467887774 456677767664 24444444556666777777665332221 11111 011245898884321
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
...+.+..+.|+++|+++...
T Consensus 221 --------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 --------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred --------HHHHHHHHHhhccCCEEEEEc
Confidence 246788999999999998754
No 352
>PTZ00357 methyltransferase; Provisional
Probab=37.30 E-value=93 Score=36.10 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=55.5
Q ss_pred CeEEEECCCCchHHHHHhhC----CCcccccCccccc-HHH--HHHHHHc-----------CCCeEEEEeCCCCCCCCC-
Q 009946 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVH-ENQ--IQFALER-----------GIPSTLGVLGTKRLPYPS- 277 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~v~gvdis~~Dis-~a~--i~~A~~r-----------g~~~~~~~~d~~~lpf~d- 277 (522)
-.|+=+|+|-|-+.....+. ++ -+.+..++-. .+. +...+.. |..+.++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gv-kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGV-RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCC-cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccc
Confidence 46899999999665444321 11 2223222222 111 1111101 224788888887764331
Q ss_pred ----------CCceEEEeccccccchhhh--HHHHHHHHHhCCC----CeEE----EEEeCCC
Q 009946 278 ----------RSFELAHCSRCRIDWLQRD--GILLLELDRLLRP----GGYF----VYSSPEA 320 (522)
Q Consensus 278 ----------~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkP----GG~l----vis~P~~ 320 (522)
+.+|+|++ ..+-.+-.+. .+.|..+.+.||+ +|.+ .|++|..
T Consensus 781 ~~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqS 842 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQ 842 (1072)
T ss_pred cccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhccccccccCCcceecchh
Confidence 36999995 3122222222 4689999999987 7863 2455543
No 353
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=37.28 E-value=1.1e+02 Score=35.00 Aligned_cols=59 Identities=17% Similarity=0.345 Sum_probs=41.9
Q ss_pred CCCCeEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
.+..+|| +-||+|.-+..+... ...+..+++|.++++.+.+..+.+-....+|+|+++.
T Consensus 504 ~k~mKIL-vaCGsGiGTStmva~--------------kIkk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 504 GKPVRIL-AVCGQGQGSSMMMKM--------------KIKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred CcccEEE-EECCCCchHHHHHHH--------------HHHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEcc
Confidence 3446777 669999655555432 2335667889988888888888876556799999775
No 354
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=37.13 E-value=76 Score=33.09 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=55.6
Q ss_pred CCeEEEECC--CCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEE--EeC-CCCC--CCCCCCceEEEeccc
Q 009946 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLG--VLG-TKRL--PYPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGC--GtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~--~~d-~~~l--pf~d~sFDlVv~s~~ 288 (522)
..+||=.|+ |.|.++..|+++. +......-.+++..+.+++.|....+. ..| .+.. ......+|+|+..-
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v- 219 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV- 219 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC-
Confidence 578999984 5668999998762 211112223444445777777644333 111 0111 01224699998543
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
-...+.+..+.|+++|.++....
T Consensus 220 -------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 220 -------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred -------CHHHHHHHHHHhccCCEEEEEec
Confidence 13577889999999999998653
No 355
>PRK13699 putative methylase; Provisional
Probab=36.22 E-value=1.1e+02 Score=30.26 Aligned_cols=40 Identities=25% Similarity=0.154 Sum_probs=26.4
Q ss_pred CCCeEEEECCCCchHHHHHh--hCCCcccccCcccccHHHHHHHHHc
Q 009946 215 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALER 259 (522)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~~~v~gvdis~~Dis~a~i~~A~~r 259 (522)
.+..|||-=||+|+.+.... +++..|++++ +...+.+.+|
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~-----~~y~~~~~~r 204 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELL-----EQYHRAGQQR 204 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecC-----HHHHHHHHHH
Confidence 34679999999998776654 4566666554 4444555444
No 356
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=35.24 E-value=1.7e+02 Score=29.82 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=50.0
Q ss_pred CCeEEEECCCC-chHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCCC---C-C-CCCCCceEEEeccc
Q 009946 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKR---L-P-YPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~~---l-p-f~d~sFDlVv~s~~ 288 (522)
..+||-.|+|. |.++..++.. .++. +.....++...+...+.+.. .+....... + . .+...+|+|+...
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~--~G~~~v~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~vld~~- 235 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKI--LGAKRVIAVDIDDEKLAVARELGAD-DTINPKEEDVEKVRELTEGRGADLVIEAA- 235 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcCCC-EEecCccccHHHHHHHhCCCCCCEEEECC-
Confidence 45788888654 4555555554 2333 33334445555666555542 111111000 0 1 1223489998432
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.....+..+.+.|+++|.++...
T Consensus 236 ------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 ------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 11346788899999999998765
No 357
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.67 E-value=1.8e+02 Score=29.79 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=49.7
Q ss_pred CCeEEEECCCC-chHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCC---------CCCCCCCCCceEEE
Q 009946 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT---------KRLPYPSRSFELAH 284 (522)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~---------~~lpf~d~sFDlVv 284 (522)
..+||=.|+|. |.++..+++. .+.. +.....++...+.+++.+....+...+. .++ ...+.+|+|+
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~--~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~-~~~~~~d~vl 239 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKA--FGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAEL-LGGKGPDVVI 239 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHH-hCCCCCCEEE
Confidence 46677777653 4555555554 2333 3333444555566655544322211110 011 2334599998
Q ss_pred eccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
-... ....+.+..+.|+++|+++...
T Consensus 240 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 240 ECTG-------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred ECCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 4321 1236788899999999998765
No 358
>PLN02827 Alcohol dehydrogenase-like
Probab=34.42 E-value=1.3e+02 Score=31.75 Aligned_cols=94 Identities=13% Similarity=0.019 Sum_probs=50.9
Q ss_pred CCCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCC-CCCC-----CCCCCceEEEec
Q 009946 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGT-KRLP-----YPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~-~~lp-----f~d~sFDlVv~s 286 (522)
...+||=+|+| .|.++..++.. .+. .+...+.++...+.+++.|....+...+. .... ...+.+|+|+-.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~--~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKL--RGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 34678888864 23344444443 133 23344556677788877775332211110 0000 111258988733
Q ss_pred cccccchhhhHHHHHHHHHhCCCC-eEEEEEe
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPG-G~lvis~ 317 (522)
.. ....+.+..+.|++| |.+++..
T Consensus 271 ~G-------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 271 VG-------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CC-------ChHHHHHHHHhhccCCCEEEEEC
Confidence 21 123577788899999 9998754
No 359
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=34.11 E-value=1.7e+02 Score=29.84 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=53.4
Q ss_pred CCCeEEEECC--CCchHHHHHhhCCCcccccCcccccHHHHHHHHH-cCCCeEEEEeCCCCC-----CCCCCCceEEEec
Q 009946 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRL-----PYPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGC--GtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~-rg~~~~~~~~d~~~l-----pf~d~sFDlVv~s 286 (522)
.+.+||=.|+ |.|.++..++... +..+.....++...+.+++ .|....+...+...+ ....+.+|+|+-.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 3467888886 4566766676642 3344444455666677766 555322221111011 0112468988733
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
. . ...+.+..+.|+++|.++...
T Consensus 229 ~---g-----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 V---G-----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred C---C-----HHHHHHHHHHhccCcEEEEec
Confidence 2 1 246788899999999999754
No 360
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=33.62 E-value=85 Score=31.52 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecceEEEeccCC
Q 009946 296 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 360 (522)
Q Consensus 296 ~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~~~iw~Kp~~ 360 (522)
....+.+..|+|+++|.+++..+.. ....+...+++.||... ...+|.|+..
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~---------~~~~~~~~~~~~gf~~~----~~iiw~k~~~ 129 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFS---------NLARIEDIAKKLGFEIL----GKIIWKKPSP 129 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCch---------hhhHHHHHHHhCCCeEe----eeEEEeCCCC
Confidence 4568899999999999999987652 23456677788999888 4678988855
No 361
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=33.56 E-value=1.6e+02 Score=30.24 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=51.6
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCCCCC-----C-CCCCCceEEEecc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~~~l-----p-f~d~sFDlVv~s~ 287 (522)
..+||=.|+| .|.++..+++.. +. .+...+.++.....+++.|....+. .....+ . .....+|+|+...
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~g~~~~v~-~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKEYGATDIVD-YKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcCCceEec-CCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 4678888865 334445555442 33 2444455566667777766532221 111111 0 1224589888432
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
. ....+.++.+.|+++|+++...
T Consensus 244 g-------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 244 G-------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEec
Confidence 1 1246889999999999998654
No 362
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=33.21 E-value=23 Score=30.43 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhccccCC
Q 009946 23 ISVLGLVCLYYGSTSAP 39 (522)
Q Consensus 23 ~~~~~~~~~~~~~~~~~ 39 (522)
+++||++||++|.+|++
T Consensus 5 ~l~Lc~~SF~~G~lft~ 21 (95)
T PF13334_consen 5 VLLLCIASFCAGMLFTN 21 (95)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56677777888888874
No 363
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=31.16 E-value=2.3e+02 Score=30.15 Aligned_cols=99 Identities=17% Similarity=0.105 Sum_probs=52.2
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCCCCC------CCCCCceEEEecc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp------f~d~sFDlVv~s~ 287 (522)
..+||=.|+| .|.++..++... +.. +...+.++...+.+++.|.. .+.......+. .....+|+|+-..
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~~--Ga~~vi~~d~~~~r~~~a~~~Ga~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~ 262 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQLL--GAAVVIVGDLNPARLAQARSFGCE-TVDLSKDATLPEQIEQILGEPEVDCAVDCV 262 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHcCCe-EEecCCcccHHHHHHHHcCCCCCcEEEECC
Confidence 3556667765 334444444431 222 22235566777888887764 22111101110 1224589988432
Q ss_pred ccccc--------hhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 288 CRIDW--------LQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 288 ~~l~~--------~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
. ... ..+....+.+..+++|+||++++..-
T Consensus 263 G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 263 G-FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred C-CccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 1 110 01113478889999999999998663
No 364
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=30.65 E-value=2.6e+02 Score=28.19 Aligned_cols=85 Identities=16% Similarity=0.138 Sum_probs=47.1
Q ss_pred CeEEEECCCCchHHHH---HhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 217 RNVLDVGCGVASFGAY---LLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 217 ~~VLDIGCGtG~~a~~---La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
.+||=.||| .++.. ++.. .++.+.....++...+.+++.|....+ +.... +.+.+|+++....
T Consensus 169 ~~vlV~g~g--~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~--~~~~vD~vi~~~~----- 234 (329)
T cd08298 169 QRLGLYGFG--ASAHLALQIARY--QGAEVFAFTRSGEHQELARELGADWAG---DSDDL--PPEPLDAAIIFAP----- 234 (329)
T ss_pred CEEEEECCc--HHHHHHHHHHHH--CCCeEEEEcCChHHHHHHHHhCCcEEe---ccCcc--CCCcccEEEEcCC-----
Confidence 556667764 34433 3333 233444444455566667665542211 11211 2346888763210
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 294 QRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.++.+.|+++|.++...
T Consensus 235 --~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 --VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred --cHHHHHHHHHHhhcCCEEEEEc
Confidence 1247889999999999999754
No 365
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=29.54 E-value=1.1e+02 Score=32.29 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=46.8
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccccCccccc-HHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccch
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVH-ENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvdis~~Dis-~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~ 293 (522)
..+||=.|+| .|.++..+++.. +..+...+.+ +...+.+++.|....+...+...+.-..+.+|+|+-...
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G----- 251 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVS----- 251 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCC-----
Confidence 4678878874 334445555431 2233333333 233456666565322211110000000024788873221
Q ss_pred hhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 294 QRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
....+.+..+.|++||.++...
T Consensus 252 --~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 252 --AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred --cHHHHHHHHHhhcCCCEEEEEc
Confidence 1236778889999999999765
No 366
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=29.52 E-value=2.4e+02 Score=29.16 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=50.8
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCceEEEe
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAHC 285 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp--------f~d~sFDlVv~ 285 (522)
..+||-.|+| .|..+..+++. .+.. +.....++...+.+++.+.. .+. +..... .+.+.+|+++.
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~~~g~~-~vv--~~~~~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELARRFGAT-HTV--NASEDDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHHhCCe-EEe--CCCCccHHHHHHHHcCCCCCCEEEE
Confidence 4678888764 34455555544 2333 43444455565666655542 111 111111 12356898884
Q ss_pred ccccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
... ....+.++.+.|+++|+++....
T Consensus 258 ~~~-------~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 258 AVG-------RAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred cCC-------ChHHHHHHHHHhhcCCeEEEEec
Confidence 321 12467889999999999987653
No 367
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=29.18 E-value=2.7e+02 Score=28.42 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=48.8
Q ss_pred CCeEEEECCCC-chHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC-----CCCCCceEEEeccc
Q 009946 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRC 288 (522)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp-----f~d~sFDlVv~s~~ 288 (522)
..+||-.|+|. |.++..+++.. +. .+...+-++.....+++.+....+. .....+. .+.+.+|+|+....
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vd~vld~~g 240 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKKMGADVVIN-PREEDVVEVKSVTDGTGVDVVLEMSG 240 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCcceeeC-cccccHHHHHHHcCCCCCCEEEECCC
Confidence 45677777642 44555555442 23 2222334455555666655422211 1111110 12346899984321
Q ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
....+.++.+.|+++|.++....
T Consensus 241 -------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 241 -------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred -------CHHHHHHHHHHhccCCEEEEEcc
Confidence 12367788899999999987653
No 368
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.04 E-value=4.4e+02 Score=26.98 Aligned_cols=123 Identities=20% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCeEEEECCCCchHHHHHhhC------CCcccccCcccc--------cHHHHHHHHHcCCCeEEEEeCCCCCC----CCC
Q 009946 216 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDV--------HENQIQFALERGIPSTLGVLGTKRLP----YPS 277 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~------~v~gvdis~~Di--------s~a~i~~A~~rg~~~~~~~~d~~~lp----f~d 277 (522)
-.+||.+|=|.=+|+..|+.+ ++++.++...+. ....++..+..|..+. ...|...+. +.-
T Consensus 57 ~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~-h~Vdv~sl~~~~~~~~ 135 (282)
T KOG4174|consen 57 KQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTIL-HGVDVTSLKFHADLRL 135 (282)
T ss_pred cccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceE-ecccceeEEecccccc
Confidence 356999999988888888864 334444433321 1222333333344332 223333222 334
Q ss_pred CCceEEEeccccccch----------------hh-hHHHHHHHHHhCC-CCeEEEEEeCCCCCCChhHHHHHHHHHHHHH
Q 009946 278 RSFELAHCSRCRIDWL----------------QR-DGILLLELDRLLR-PGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 339 (522)
Q Consensus 278 ~sFDlVv~s~~~l~~~----------------~d-~~~~L~ei~RvLk-PGG~lvis~P~~~~~~~e~~~~~~~l~~l~~ 339 (522)
+.||-|+.++ .|. .+ ...+|..+...|+ ..|.+.++.-..+.... |. ++.|++
T Consensus 136 ~~~d~IiFNF---PH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~-----W~-ik~Lak 206 (282)
T KOG4174|consen 136 QRYDNIIFNF---PHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNP-----WN-IKFLAK 206 (282)
T ss_pred cccceEEEcC---CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCch-----hh-hhHhhh
Confidence 5788888642 111 11 1348889999999 88999998655544433 64 788999
Q ss_pred hcCcEEEEE
Q 009946 340 SMCWKIVSK 348 (522)
Q Consensus 340 ~~g~~~v~~ 348 (522)
..|+.+...
T Consensus 207 ~~gl~L~~~ 215 (282)
T KOG4174|consen 207 EFGLTLLED 215 (282)
T ss_pred hccccchhc
Confidence 999988865
No 369
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=28.83 E-value=2e+02 Score=29.29 Aligned_cols=90 Identities=7% Similarity=0.042 Sum_probs=51.6
Q ss_pred CeEEEECC--CCchHHHHHhhCCCccc-ccCcccccHHHHHHHHH-cCCCeEEEEeCCCCCC-----CCCCCceEEEecc
Q 009946 217 RNVLDVGC--GVASFGAYLLSHDIIAM-SLAPNDVHENQIQFALE-RGIPSTLGVLGTKRLP-----YPSRSFELAHCSR 287 (522)
Q Consensus 217 ~~VLDIGC--GtG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~-rg~~~~~~~~d~~~lp-----f~d~sFDlVv~s~ 287 (522)
.+||=.|+ |.|.++..++... +. .+.....++...+.+++ .|....+.. ....+. ...+.+|+|+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~-~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELGFDAAINY-KTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcCCcEEEEC-CCCCHHHHHHHHCCCCceEEEECC
Confidence 67888886 4667777777642 33 34444555666666655 555332221 111110 1124699998432
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
. ...+.+..+.|+++|.++...
T Consensus 233 g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--------cHHHHHHHHHhccCCEEEEEe
Confidence 1 123577889999999999754
No 370
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=28.49 E-value=3.2e+02 Score=28.13 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=49.5
Q ss_pred CCCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC---------CCCCCceEE
Q 009946 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------YPSRSFELA 283 (522)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp---------f~d~sFDlV 283 (522)
...+||=.|+| .|..+..++.. .++ .+...+.++...+.+++.|....+. ......+ ...+.+|+|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELAREFGADATID-IDELPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCCeEEc-CcccccHHHHHHHHHHhCCCCCcEE
Confidence 34567777753 22333344443 233 3444455566666666655432221 1111100 112458988
Q ss_pred EeccccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 284 v~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
+-... ....+.+..+.|+++|.++....
T Consensus 254 id~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 254 IEASG-------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EECCC-------ChHHHHHHHHHhccCCEEEEEcC
Confidence 83221 12467788899999999997653
No 371
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=28.44 E-value=3.2e+02 Score=27.78 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=49.3
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCCCC------CCCCCCceEEEecc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL------PYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~~l------pf~d~sFDlVv~s~ 287 (522)
..+||-.|+| .|..+..++... +.. +...+.++...+.+++.+....+.. ....+ ..+.+.||+|+-..
T Consensus 162 g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~~~~v~~-~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 162 GKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKKMGATYVVNP-FKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCCcEEEcc-cccCHHHHHHHhcCCCCCCEEEECC
Confidence 3566666664 334444455431 332 3333445555566666564221211 11110 01235689998432
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEeC
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P 318 (522)
. ....+.++.+.|+++|.++....
T Consensus 239 --g-----~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 239 --G-----APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred --C-----CHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 12468889999999999987653
No 372
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=28.11 E-value=2.6e+02 Score=28.06 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCeEEEECCCCchHHHHHhhC-CCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
..+||=.|+ |.++..+.+. ...++.+.....++...+.+++.|....+. .... ...+.+|+|+-...
T Consensus 156 g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~d~vid~~g------ 223 (319)
T cd08242 156 GDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLP---DEAE-SEGGGFDVVVEATG------ 223 (319)
T ss_pred CCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeC---cccc-ccCCCCCEEEECCC------
Confidence 467887775 4555444321 112344444455666777777765432221 1111 23356999984321
Q ss_pred hhHHHHHHHHHhCCCCeEEEEE
Q 009946 295 RDGILLLELDRLLRPGGYFVYS 316 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvis 316 (522)
....+..+.+.|+++|.+++.
T Consensus 224 -~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 -SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred -ChHHHHHHHHHhhcCCEEEEE
Confidence 134677888999999999973
No 373
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.30 E-value=1.1e+02 Score=25.89 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=28.5
Q ss_pred EEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 219 VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
|| +-||+|.-+..++.. ...+...++|.++.+...+..+++-....+|+|+++.
T Consensus 5 IL-vvCgsG~~TS~m~~~--------------ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 5 II-VACGGAVATSTMAAE--------------EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred EE-EECCCchhHHHHHHH--------------HHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 44 448888655544321 1224445566666666555544432124577777553
No 374
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=26.92 E-value=2.4e+02 Score=29.37 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=52.2
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCC-CC----C-CCCCCCceEEEecc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGT-KR----L-PYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~-~~----l-pf~d~sFDlVv~s~ 287 (522)
..+||=+|+| .|.++..+++. .+. .+...+.++...+.+++.|....+...+. .. + ....+.+|+|+-..
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 263 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARM--AKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 4678888875 24455555543 233 34444667777888887776433321110 00 0 01112588887322
Q ss_pred ccccchhhhHHHHHHHHHhCCCC-eEEEEEe
Q 009946 288 CRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPG-G~lvis~ 317 (522)
. ....+.+..+.|++| |++++..
T Consensus 264 G-------~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 264 G-------NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred C-------CHHHHHHHHHHhhcCCCeEEEEe
Confidence 1 124677788899986 9988765
No 375
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=26.37 E-value=2.4e+02 Score=29.33 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=50.2
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCC-CC----C-CCCCCCceEEEecc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGT-KR----L-PYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~-~~----l-pf~d~sFDlVv~s~ 287 (522)
..+||=+|+| .|.++..++.. .+. .+...+.++...+.+++.|....+...+. .. + ....+.+|+|+-..
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~ 262 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence 4678888864 23344444443 233 24444556677777777665322211110 00 0 01124589888322
Q ss_pred ccccchhhhHHHHHHHHHhCCCC-eEEEEEe
Q 009946 288 CRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPG-G~lvis~ 317 (522)
. ....+.+..+.|+++ |.+++..
T Consensus 263 g-------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 263 G-------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred C-------ChHHHHHHHHhcccCCCEEEEEc
Confidence 1 124678888899886 9998765
No 376
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.17 E-value=58 Score=29.24 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=3.1
Q ss_pred chhHHHHH
Q 009946 13 KQLTYVLL 20 (522)
Q Consensus 13 ~~~~~~~~ 20 (522)
|.++.+++
T Consensus 2 W~l~~iii 9 (130)
T PF12273_consen 2 WVLFAIII 9 (130)
T ss_pred eeeHHHHH
Confidence 44443333
No 377
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=26.13 E-value=2.6e+02 Score=29.09 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=52.0
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCCC-CC-----CCCCCCceEEEecc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-----PYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~~-~l-----pf~d~sFDlVv~s~ 287 (522)
..+||=+|+| .|.++..+++. .+. .+...+.++...+.+++.|....+...+.. .+ ....+.+|+|+-..
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 264 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECI 264 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence 4678888864 23444445543 233 344456677777888776654322211110 00 01123589888432
Q ss_pred ccccchhhhHHHHHHHHHhCCCC-eEEEEEe
Q 009946 288 CRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPG-G~lvis~ 317 (522)
. ....+.+..+.|+++ |++++..
T Consensus 265 g-------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 265 G-------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred C-------ChHHHHHHHHhhccCCCeEEEEc
Confidence 1 124677888999997 9998765
No 378
>COG4093 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.09 E-value=53 Score=34.07 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.2
Q ss_pred CcccccccccchhHHHHHHHHHHHHHHHHHhccccC
Q 009946 3 QKSEQQIRTSKQLTYVLLGLISVLGLVCLYYGSTSA 38 (522)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (522)
-..+++.++|||++.+++.++++.++ |.+++|-
T Consensus 4 sa~a~~~~~rkr~~wl~i~ivv~~g~---ySaGWFy 36 (338)
T COG4093 4 SAKAPQSATRKRLFWLVIAIVVLIGA---YSAGWFY 36 (338)
T ss_pred cccCCCCccccchhHHHHHHHHHHHH---hcchHhh
Confidence 34566677899999999988888885 8777776
No 379
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=26.07 E-value=2.1e+02 Score=29.41 Aligned_cols=90 Identities=22% Similarity=0.218 Sum_probs=55.5
Q ss_pred CeEEEECCC--CchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchh
Q 009946 217 RNVLDVGCG--VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 217 ~~VLDIGCG--tG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~ 294 (522)
.+|+=+|.| -|+++..|..+ ...+.+.+.|.+.+....+.+.+.......... --.....|+|+.+-- +.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~---~~~~~~aD~VivavP----i~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAALELGVIDELTVAGL---AEAAAEADLVIVAVP----IE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHhhcCcccccccchh---hhhcccCCEEEEecc----HH
Confidence 457777766 34566666554 334566777888888888877765332211110 112245799985431 33
Q ss_pred hhHHHHHHHHHhCCCCeEEE
Q 009946 295 RDGILLLELDRLLRPGGYFV 314 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lv 314 (522)
....+++++...|++|..+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHHHhcccCCCCCEEE
Confidence 44678999999999987765
No 380
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=25.93 E-value=1.3e+02 Score=32.63 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=48.4
Q ss_pred CCCeEEEECCC-Cc-hHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 215 NIRNVLDVGCG-VA-SFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 215 ~~~~VLDIGCG-tG-~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
..++||=||.| .| ..+.+|.++++..+.+.......+. +.|.+.+. ... ...+++---..+|+|+++.+..++
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-~La~~~~~--~~~--~l~el~~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-ELAKKLGA--EAV--ALEELLEALAEADVVISSTSAPHP 251 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHHHhCC--eee--cHHHHHHhhhhCCEEEEecCCCcc
Confidence 34789999999 67 4556777777777777776654443 67777662 222 233333222469999988766666
Q ss_pred hhh
Q 009946 293 LQR 295 (522)
Q Consensus 293 ~~d 295 (522)
+-.
T Consensus 252 ii~ 254 (414)
T COG0373 252 IIT 254 (414)
T ss_pred ccC
Confidence 543
No 381
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.89 E-value=2.5e+02 Score=25.49 Aligned_cols=73 Identities=11% Similarity=-0.069 Sum_probs=48.9
Q ss_pred CCceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecceEEE
Q 009946 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (522)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g~~~v~~~~~~~iw 355 (522)
...|.|+.-. +-. -.+....|-.+.+.|..+|.+++.+|..-....- .-.++.+.+..+|+...........|
T Consensus 44 dvvD~vllWw-R~~-DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V---~~~~I~eaA~taGL~~t~~~~v~~dW 116 (127)
T PF11253_consen 44 DVVDVVLLWW-RDD-DGDLVDALVDARTNLADDGVIWVLTPKAGRPGHV---EPSDIREAAPTAGLVQTKSCAVGDDW 116 (127)
T ss_pred ccccEEEEEE-ECC-cchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCC---CHHHHHHHHhhcCCeeeeeeccCCCc
Confidence 4578876432 111 1245668889999999999999999865332111 12368888999999877666655445
No 382
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.84 E-value=1.2e+02 Score=31.75 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=27.2
Q ss_pred CCeEEEECCCCchHHHHHhhCC-CcccccCcccccHHHHHHH
Q 009946 216 IRNVLDVGCGVASFGAYLLSHD-IIAMSLAPNDVHENQIQFA 256 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~-v~gvdis~~Dis~a~i~~A 256 (522)
...|+.+|||.-.+...|.+.. ..-+.+..+|..+.....+
T Consensus 88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 3679999999998888887642 3334444556665555544
No 383
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=24.22 E-value=59 Score=32.37 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=25.5
Q ss_pred CCeEEEECCCCchHHHHHhhC--CC-----cccccCcccccHHHHHHHHHc
Q 009946 216 IRNVLDVGCGVASFGAYLLSH--DI-----IAMSLAPNDVHENQIQFALER 259 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~v-----~gvdis~~Dis~a~i~~A~~r 259 (522)
+-+|+|+|+|.|.++..+++. .. ..+++.-++.|+.+.+..+++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 367999999999999888753 11 123444445555555444444
No 384
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.30 E-value=4.5e+02 Score=25.41 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=31.5
Q ss_pred CCCCCceEEEeccccc-----------cchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 275 YPSRSFELAHCSRCRI-----------DWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 275 f~d~sFDlVv~s~~~l-----------~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
...+..|+|+.+.|.. +|..+.+.++..+..+|+|+-.+++.+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 3456679999876533 233455778889999999999999866
No 385
>PF14881 Tubulin_3: Tubulin domain
Probab=23.23 E-value=53 Score=31.45 Aligned_cols=29 Identities=31% Similarity=0.669 Sum_probs=23.1
Q ss_pred cccccccchhHHhhhc--------CCCc-eeeeeccCC
Q 009946 463 VMDMNSNLGGFAAALK--------DKDV-WVMNVAPVR 491 (522)
Q Consensus 463 vmdm~a~~ggfaaal~--------~~~~-wvmnvvp~~ 491 (522)
+.|+.-++||||+.+. +.++ |+.++-+..
T Consensus 80 ~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~ 117 (180)
T PF14881_consen 80 LTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPS 117 (180)
T ss_pred EecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcc
Confidence 7889999999999996 5564 988775544
No 386
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=23.18 E-value=2.4e+02 Score=29.25 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=48.6
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCcccc-cCcccccHHHHHHHHHcCCCeEEEEeCCCCC------CCCCCCceEEEecc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL------PYPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gvd-is~~Dis~a~i~~A~~rg~~~~~~~~d~~~l------pf~d~sFDlVv~s~ 287 (522)
..+||=.|+| .|..+..+++. .++. +...+.++...+.+++.+....+. .....+ ..+...||+|+...
T Consensus 188 g~~VlI~g~g~vG~~~~~lak~--~G~~~vi~~~~s~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~~d~vld~v 264 (367)
T cd08263 188 GETVAVIGVGGVGSSAIQLAKA--FGASPIIAVDVRDEKLAKAKELGATHTVN-AAKEDAVAAIREITGGRGVDVVVEAL 264 (367)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHhCCceEec-CCcccHHHHHHHHhCCCCCCEEEEeC
Confidence 3567766653 33444444443 2333 333344566666666655422111 111111 01235699998432
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
. . ...+.++.+.|+++|.++...
T Consensus 265 g------~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 265 G------K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred C------C-HHHHHHHHHHHhcCCEEEEEc
Confidence 1 1 126788899999999998765
No 387
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=23.10 E-value=3.2e+02 Score=27.92 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=49.1
Q ss_pred CCeEEEECCC-CchHHHHHhhCCCccc-ccCcccccHHHHHHHHHcCCCeEEEEeCCCCC-----C-CCCCCceEEEecc
Q 009946 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCSR 287 (522)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~v~gv-dis~~Dis~a~i~~A~~rg~~~~~~~~d~~~l-----p-f~d~sFDlVv~s~ 287 (522)
..+||=.|+| .|.++..++.. .+. .+...+.++...+.+++.|....+...+ .++ . ...+.+|+|+-..
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~--~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~-~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKA--AGASKIIVSEPSEARRELAEELGATIVLDPTE-VDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHhCCCEEECCCc-cCHHHHHHHHhCCCCCCEEEECC
Confidence 4567777753 23344444443 233 3333345566666776655432221111 111 0 1223489988332
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
. ....+.++.+.|+++|.++...
T Consensus 250 g-------~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 250 G-------VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred C-------CHHHHHHHHHhccCCCEEEEEc
Confidence 1 1236788899999999998765
No 388
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=22.79 E-value=2e+02 Score=24.53 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=34.2
Q ss_pred EEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEecc
Q 009946 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (522)
Q Consensus 219 VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~ 287 (522)
||= -||+|.-+..+.+. ...+..+++|.++...+......+-....+|+++++.
T Consensus 4 IL~-aCG~GvgSS~~ik~--------------kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 4 ILA-ACGNGVGSSTMIKM--------------KVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred EEE-ECCCCccHHHHHHH--------------HHHHHHHHcCCCceeeeEEecccccCCCcccEEEEeh
Confidence 443 38888655555432 2335667788876666666555554445689999775
No 389
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.65 E-value=2e+02 Score=25.94 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=49.2
Q ss_pred CeEEEECCCCc-hHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCC-CCCceEEEeccccccchh
Q 009946 217 RNVLDVGCGVA-SFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQ 294 (522)
Q Consensus 217 ~~VLDIGCGtG-~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~-d~sFDlVv~s~~~l~~~~ 294 (522)
.+|.+||-|-= ..+..|+++ |+|+...|+.+. .|. ..+.+.+-|..+-... -...|+|.+.++ .+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a~---~g~~~v~DDitnP~~~iY~~A~lIYSiRp----pp 81 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TAP---EGLRFVVDDITNPNISIYEGADLIYSIRP----PP 81 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cCc---ccceEEEccCCCccHHHhhCccceeecCC----CH
Confidence 57999998865 456777777 577777777655 121 2345555554332210 024688886553 34
Q ss_pred hhHHHHHHHHHhCCCCeE
Q 009946 295 RDGILLLELDRLLRPGGY 312 (522)
Q Consensus 295 d~~~~L~ei~RvLkPGG~ 312 (522)
+....+-++.+.++-.-+
T Consensus 82 El~~~ildva~aVga~l~ 99 (129)
T COG1255 82 ELQSAILDVAKAVGAPLY 99 (129)
T ss_pred HHHHHHHHHHHhhCCCEE
Confidence 555666677776654433
No 390
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=22.38 E-value=76 Score=33.77 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=46.1
Q ss_pred CCCeEEEECCC-CchHHHHHhhCCCcccccCcccccHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCceEEEeccccccc
Q 009946 215 NIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (522)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~r-g~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~ 292 (522)
.+.+|+=+|+| .|..+...+.. .+.++...|.+....+.+... +..+.....+...+.-.-..+|+|+.... ..-
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~-~~g 242 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANG--LGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL-IPG 242 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc-cCC
Confidence 34679999988 34444444433 133444445555444444332 22221111111111100135899985431 111
Q ss_pred hhhhHHHHHHHHHhCCCCeEEEEE
Q 009946 293 LQRDGILLLELDRLLRPGGYFVYS 316 (522)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvis 316 (522)
...+.-+-.+..+.+|||+.++-.
T Consensus 243 ~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 243 AKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCCcCcCHHHHhcCCCCCEEEEE
Confidence 111222336666778999887743
No 391
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=22.11 E-value=5.2e+02 Score=26.43 Aligned_cols=93 Identities=9% Similarity=0.023 Sum_probs=50.6
Q ss_pred CeEEEECCC-Cc-hHHHHHhhCCCcccccCcccccHHHHHHHHH-cCCCeEEEEeCCCC------CCCCCCCceEEEecc
Q 009946 217 RNVLDVGCG-VA-SFGAYLLSHDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKR------LPYPSRSFELAHCSR 287 (522)
Q Consensus 217 ~~VLDIGCG-tG-~~a~~La~~~v~gvdis~~Dis~a~i~~A~~-rg~~~~~~~~d~~~------lpf~d~sFDlVv~s~ 287 (522)
.+|+=+|+| .| .++.+|.+. +.+++..+-....++..++ .|..+. ....... .+-+.+.||+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQAGGLTLV-EQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhcCCeEEe-eCCcceeeccCCCCcccccccCEEEEEC
Confidence 468889988 34 566666665 3444444544444444443 343221 0010000 111224799998543
Q ss_pred ccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
=. .+....+..+...+.++..++..-
T Consensus 79 --K~--~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 79 --KA--YDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred --CH--HhHHHHHHHHHhhCCCCCEEEEEe
Confidence 11 234568899999999998776654
No 392
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=21.80 E-value=2.6e+02 Score=29.06 Aligned_cols=32 Identities=16% Similarity=0.008 Sum_probs=22.4
Q ss_pred CceEEEeccccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 279 sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.+|+|+-.. . ....+..+.+.|++||+++...
T Consensus 244 ~~D~vid~~---g----~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 244 SLDYIIDTV---P----VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CCcEEEECC---C----chHHHHHHHHHhccCCEEEEEC
Confidence 478887322 1 1236777889999999999765
No 393
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=21.72 E-value=3.7e+02 Score=26.32 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=49.6
Q ss_pred CCCeEEEECCC--CchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCC------CCCCCceEEEec
Q 009946 215 NIRNVLDVGCG--VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPSRSFELAHCS 286 (522)
Q Consensus 215 ~~~~VLDIGCG--tG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lp------f~d~sFDlVv~s 286 (522)
...+||-.||. .|..+..++.. .+..+...+.+....+.+++.+....+... ...+. .....+|+++..
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~i~~~~~~~~~d~v~~~ 215 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKA--LGARVIAAASSEEKLALARALGADHVIDYR-DPDLRERVKALTGGRGVDVVYDP 215 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHH--hCCEEEEEeCCHHHHHHHHHcCCceeeecC-CccHHHHHHHHcCCCCcEEEEEC
Confidence 34689999982 44444444443 233343344455566666666543222211 11110 122458988743
Q ss_pred cccccchhhhHHHHHHHHHhCCCCeEEEEEe
Q 009946 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (522)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvis~ 317 (522)
.. ...+..+.+.++++|.++...
T Consensus 216 ~g--------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 216 VG--------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred cc--------HHHHHHHHHhhccCCEEEEEc
Confidence 31 124567788999999988654
No 394
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=21.25 E-value=5.4e+02 Score=22.23 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=41.6
Q ss_pred eEEEECCCCchHHHHHhhCCCcccccCcccccHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCceEEEeccccccchhhhH
Q 009946 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297 (522)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~v~gvdis~~Dis~a~i~~A~~rg~~~~~~~~d~~~lpf~d~sFDlVv~s~~~l~~~~d~~ 297 (522)
+||= -||.|.-+..|+++ +...+++.+.++.+..............+|+|+.+. ...
T Consensus 5 kIll-vC~~G~sTSll~~k---------------m~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~P-------qi~ 61 (106)
T PRK10499 5 HIYL-FCSAGMSTSLLVSK---------------MRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGP-------QIA 61 (106)
T ss_pred EEEE-ECCCCccHHHHHHH---------------HHHHHHHCCCCEEEEEeecchhhccccCCCEEEECH-------HHH
Confidence 3443 38888777777653 122335667777665533322222234589998553 222
Q ss_pred HHHHHHHHhCCCCeEEEEEeCCCC
Q 009946 298 ILLLELDRLLRPGGYFVYSSPEAY 321 (522)
Q Consensus 298 ~~L~ei~RvLkPGG~lvis~P~~~ 321 (522)
..+.++.+...+ -.+....+..|
T Consensus 62 ~~~~~i~~~~~~-~pV~~I~~~~Y 84 (106)
T PRK10499 62 YMLPEIQRLLPN-KPVEVIDSLLY 84 (106)
T ss_pred HHHHHHHhhcCC-CCEEEEChHhh
Confidence 345555555443 34555444443
No 395
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=20.88 E-value=6.8e+02 Score=27.67 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=58.6
Q ss_pred CCeEEEECCCCchHHHHHhhC---CCcccccCcccccHHHHHHHHHc----CCC---eEEEEeCCCCC-CC-CCCCceEE
Q 009946 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GIP---STLGVLGTKRL-PY-PSRSFELA 283 (522)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~v~gvdis~~Dis~a~i~~A~~r----g~~---~~~~~~d~~~l-pf-~d~sFDlV 283 (522)
...+.|.-||+|.+....... .-....+.+.+....+...+... +.. ......|...- .+ ....||.|
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v 297 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVV 297 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEE
Confidence 357999999999987653321 01113455666666666666543 221 22223332221 12 23568888
Q ss_pred Eeccc--c------------------ccch----hhhHHHHHHHHHhCCCCeEEEEEeCCC
Q 009946 284 HCSRC--R------------------IDWL----QRDGILLLELDRLLRPGGYFVYSSPEA 320 (522)
Q Consensus 284 v~s~~--~------------------l~~~----~d~~~~L~ei~RvLkPGG~lvis~P~~ 320 (522)
+++.- . .|.. .....++..+..+|++||...++.|..
T Consensus 298 ~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 298 VSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred eecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 76320 0 0101 112357888899999999988887754
No 396
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=20.82 E-value=1.7e+02 Score=30.59 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=35.3
Q ss_pred CeEEEEeCCCCCCCCC-------CCceEEEeccccc----cchhhhHHHHHHHHHhCCCCeEEEEEe-CCCC
Q 009946 262 PSTLGVLGTKRLPYPS-------RSFELAHCSRCRI----DWLQRDGILLLELDRLLRPGGYFVYSS-PEAY 321 (522)
Q Consensus 262 ~~~~~~~d~~~lpf~d-------~sFDlVv~s~~~l----~~~~d~~~~L~ei~RvLkPGG~lvis~-P~~~ 321 (522)
++.|.+.|+..+..++ .+.|+|...+.+- ..+.....+|..+...++||-.|+|++ |..|
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSY 247 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSY 247 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCc
Confidence 3566666655554321 1345554322111 112333569999999999999999987 4444
No 397
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.54 E-value=89 Score=34.92 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccCC
Q 009946 13 KQLTYVLLGLISVLGLVCLYYGSTSAP 39 (522)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (522)
|.+.++++++|+|.++++||.|.+|++
T Consensus 478 K~LWIsvAliVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 478 KVLWISVALIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445566677777777778888888884
No 398
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=20.28 E-value=2.3e+02 Score=26.96 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCCCCCCChhHHHHHH--------HHHHHHHhcCcEEEE
Q 009946 297 GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWN--------AMYDLLKSMCWKIVS 347 (522)
Q Consensus 297 ~~~L~ei~RvLkPGG~lvis~P~~~~~~~e~~~~~~--------~l~~l~~~~g~~~v~ 347 (522)
..++.-+++.|.|||.+++. |..+.+...... .+...+.++||...+
T Consensus 66 ~~l~~~~~~~l~pg~~lfVe----Y~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfK 120 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVE----YVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFK 120 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-----TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEE
T ss_pred HHHHHHHHHHhhhcCeEEEE----EecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEe
Confidence 56899999999999999995 344555544333 677778888887664
Done!