BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009947
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 373 KYTSKMLLAAIDENHRGTYDFLYLPIDF 400
K TS +L DE+HRG YD L L D
Sbjct: 290 KVTSHDILDLFDESHRGDYDLLKLNADL 317
>pdb|2JRA|A Chain A, A Novel Domain-Swapped Solution Nmr Structure Of Protein
Rpa2121 From Rhodopseudomonas Palustris. Northeast
Structural Genomics Target Rpt6
pdb|2JRA|B Chain B, A Novel Domain-Swapped Solution Nmr Structure Of Protein
Rpa2121 From Rhodopseudomonas Palustris. Northeast
Structural Genomics Target Rpt6
Length = 67
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 318 LGTTSNEAFTERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMI 367
LG +A + G R V G+Q+DS++ + +D + +I+ D R L +
Sbjct: 8 LGADPTQAASSPGGARAVSIVGNQIDSRELFTVDREIVIAHGDDRYRLRL 57
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 394 LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432
L+ PID K G+AF+ + P H + Y +G+ ++
Sbjct: 38 LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 384 DENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISF 422
DE + G+YDF+++ D N N I++V +I +
Sbjct: 150 DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGY 188
>pdb|2V36|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 193
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Query: 49 VERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNT 108
+ N L F PG N PL + + + PV + PG A+I+ L
Sbjct: 36 ILNNELTDFDAIPGGANEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTI 95
Query: 109 GKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSS 168
G + A + +++NS S +Y++ P+ LS G FG S +
Sbjct: 96 LYHIEYGMELKAAVEEPRIYTNSMS----SYRYEDGVPKDVLSKLNGMGHKFGTSPVDIG 151
Query: 169 GVGTLS 174
V ++S
Sbjct: 152 NVQSIS 157
>pdb|2QQD|C Chain C, N47a Mutant Of Pyruvoyl-Dependent Arginine Decarboxylase
From Methanococcus Jannashii
pdb|2QQD|F Chain F, N47a Mutant Of Pyruvoyl-Dependent Arginine Decarboxylase
From Methanococcus Jannashii
pdb|2QQD|G Chain G, N47a Mutant Of Pyruvoyl-Dependent Arginine Decarboxylase
From Methanococcus Jannashii
pdb|2QQD|H Chain H, N47a Mutant Of Pyruvoyl-Dependent Arginine Decarboxylase
From Methanococcus Jannashii
Length = 166
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 50 ERNPLHAFSKSPGLGTL---SPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLS 106
E NPLHA+ K P +L S PL+AF G + + L ++SI+PP
Sbjct: 5 EINPLHAYFKLPNTVSLVAGSSEGETPLNAFD---GALLNAGIGNVALIRISSIMPPE-- 59
Query: 107 NTGKIAPIGK 116
+I P+ K
Sbjct: 60 --AEIVPLPK 67
>pdb|1N2M|A Chain A, The S53a Proenzyme Structure Of Methanococcus Jannaschii.
pdb|1N2M|B Chain B, The S53a Proenzyme Structure Of Methanococcus Jannaschii.
pdb|1N2M|C Chain C, The S53a Proenzyme Structure Of Methanococcus Jannaschii.
pdb|1N2M|D Chain D, The S53a Proenzyme Structure Of Methanococcus Jannaschii.
pdb|1N2M|E Chain E, The S53a Proenzyme Structure Of Methanococcus Jannaschii.
pdb|1N2M|F Chain F, The S53a Proenzyme Structure Of Methanococcus Jannaschii
Length = 165
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 50 ERNPLHAFSKSPGLGTL---SPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLS 106
E NPLHA+ K P +L S PL+AF G + + +L +++I+PP
Sbjct: 4 EINPLHAYFKLPNTVSLVAGSSEGETPLNAFD---GALLNAGIGNVNLIRISAIMPPE-- 58
Query: 107 NTGKIAPIGK 116
+I P+ K
Sbjct: 59 --AEIVPLPK 66
>pdb|3A75|B Chain B, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|D Chain D, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 185
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Query: 49 VERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNT 108
+ N L F PG N PL + + + PV + PG A+I+ L
Sbjct: 36 ILNNELTDFDAIPGGANEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTI 95
Query: 109 GKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSS 168
G + A + +++NS S +Y++ P+ LS G FG S +
Sbjct: 96 LYHIEYGMELKAAVEEPRIYTNSMS----SYRYEDGVPKDVLSKLNGMGHKFGTSPVDIG 151
Query: 169 GVGTLS 174
V ++S
Sbjct: 152 NVQSIS 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,852,507
Number of Sequences: 62578
Number of extensions: 759105
Number of successful extensions: 2604
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2595
Number of HSP's gapped (non-prelim): 19
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)