Query 009947
Match_columns 522
No_of_seqs 200 out of 315
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 19:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 3.9E-62 8.5E-67 513.7 18.9 368 6-497 148-519 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 1.7E-45 3.7E-50 317.3 10.9 97 362-458 1-97 (97)
3 KOG0145 RNA-binding protein EL 99.3 8.9E-12 1.9E-16 125.0 7.3 83 359-447 38-120 (360)
4 PLN03134 glycine-rich RNA-bind 99.1 5.4E-10 1.2E-14 101.8 10.5 85 357-447 29-113 (144)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.1 2.8E-10 6.1E-15 112.7 9.0 82 360-447 1-82 (352)
6 TIGR01659 sex-lethal sex-letha 99.0 1.6E-08 3.5E-13 104.3 15.6 83 359-447 104-186 (346)
7 KOG0122 Translation initiation 98.9 4.1E-09 8.8E-14 105.0 8.6 84 359-448 186-269 (270)
8 PF00076 RRM_1: RNA recognitio 98.9 1.2E-08 2.6E-13 77.7 8.0 65 365-432 1-65 (70)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.8 1.3E-08 2.8E-13 100.9 9.3 78 364-447 271-348 (352)
10 smart00362 RRM_2 RNA recogniti 98.7 5.4E-08 1.2E-12 72.0 8.1 71 364-442 1-71 (72)
11 PF03467 Smg4_UPF3: Smg-4/UPF3 98.7 1.2E-08 2.5E-13 96.5 4.4 93 359-451 4-101 (176)
12 smart00360 RRM RNA recognition 98.7 5.7E-08 1.2E-12 71.4 7.1 70 367-442 1-70 (71)
13 TIGR01659 sex-lethal sex-letha 98.7 9.7E-08 2.1E-12 98.6 10.4 87 361-451 192-278 (346)
14 cd00590 RRM RRM (RNA recogniti 98.7 1.6E-07 3.5E-12 69.8 8.7 74 364-444 1-74 (74)
15 COG0724 RNA-binding proteins ( 98.6 1.3E-07 2.8E-12 84.5 8.7 84 362-451 115-200 (306)
16 TIGR01628 PABP-1234 polyadenyl 98.6 9.4E-08 2E-12 102.0 9.2 78 363-446 1-78 (562)
17 TIGR01622 SF-CC1 splicing fact 98.6 1.1E-07 2.3E-12 98.2 9.1 79 362-446 186-264 (457)
18 PF14259 RRM_6: RNA recognitio 98.6 1.3E-07 2.8E-12 73.6 7.4 65 365-432 1-65 (70)
19 TIGR01642 U2AF_lg U2 snRNP aux 98.6 1.8E-07 4E-12 97.6 9.9 84 359-448 292-375 (509)
20 KOG4207 Predicted splicing fac 98.5 1.9E-07 4.2E-12 91.8 6.5 84 360-449 11-94 (256)
21 TIGR01628 PABP-1234 polyadenyl 98.4 6.2E-07 1.3E-11 95.8 9.2 81 360-447 283-363 (562)
22 TIGR01622 SF-CC1 splicing fact 98.4 1.9E-06 4.1E-11 89.1 11.0 78 361-445 88-165 (457)
23 TIGR01645 half-pint poly-U bin 98.4 1.1E-06 2.5E-11 97.0 9.5 81 360-446 202-282 (612)
24 TIGR01648 hnRNP-R-Q heterogene 98.3 1.4E-06 3E-11 95.8 8.1 70 360-432 56-125 (578)
25 TIGR01645 half-pint poly-U bin 98.3 2E-06 4.3E-11 95.2 8.1 81 359-445 104-184 (612)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.1 9.6E-06 2.1E-10 86.2 9.6 78 360-448 273-351 (481)
27 PLN03120 nucleic acid binding 98.1 1.1E-05 2.5E-10 81.2 8.9 75 362-446 4-78 (260)
28 TIGR01648 hnRNP-R-Q heterogene 98.0 1.8E-05 3.9E-10 87.3 9.2 76 361-448 232-307 (578)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.9 3.3E-05 7.2E-10 82.2 9.2 86 361-448 393-480 (481)
30 smart00361 RRM_1 RNA recogniti 97.9 2.7E-05 5.9E-10 62.2 6.6 63 376-442 2-69 (70)
31 KOG0117 Heterogeneous nuclear 97.8 4.9E-05 1.1E-09 81.4 7.1 75 364-452 261-335 (506)
32 KOG0117 Heterogeneous nuclear 97.8 6.9E-05 1.5E-09 80.4 7.9 79 361-444 82-160 (506)
33 KOG0108 mRNA cleavage and poly 97.6 0.00027 5.8E-09 75.9 10.0 92 363-460 19-110 (435)
34 KOG0113 U1 small nuclear ribon 97.6 0.00022 4.8E-09 73.6 8.9 83 360-448 99-181 (335)
35 KOG0125 Ataxin 2-binding prote 97.6 0.00016 3.4E-09 75.4 7.7 82 358-447 92-173 (376)
36 PLN03213 repressor of silencin 97.5 0.00039 8.5E-09 75.7 9.0 78 360-447 8-87 (759)
37 KOG0127 Nucleolar protein fibr 97.4 0.00035 7.6E-09 76.7 7.8 80 360-446 115-194 (678)
38 PLN03121 nucleic acid binding 97.4 0.00062 1.3E-08 68.4 8.8 64 363-432 6-69 (243)
39 PF13893 RRM_5: RNA recognitio 97.4 0.00062 1.3E-08 51.7 6.5 56 379-445 1-56 (56)
40 TIGR01642 U2AF_lg U2 snRNP aux 97.2 0.00097 2.1E-08 70.1 8.4 80 362-447 409-501 (509)
41 KOG0107 Alternative splicing f 97.2 0.00062 1.3E-08 66.1 6.3 79 360-449 8-86 (195)
42 KOG0147 Transcriptional coacti 97.2 0.00037 8E-09 76.2 5.0 82 365-449 281-362 (549)
43 KOG4212 RNA-binding protein hn 97.2 0.00088 1.9E-08 72.2 7.3 74 361-445 535-608 (608)
44 KOG0131 Splicing factor 3b, su 97.2 0.00036 7.9E-09 68.0 3.9 82 359-446 6-87 (203)
45 KOG1295 Nonsense-mediated deca 97.1 0.00031 6.6E-09 74.1 3.2 74 360-434 5-80 (376)
46 KOG0123 Polyadenylate-binding 97.1 0.00096 2.1E-08 70.1 6.8 66 372-446 8-73 (369)
47 KOG4208 Nucleolar RNA-binding 97.1 0.0014 3E-08 64.7 7.3 84 359-447 46-129 (214)
48 KOG4206 Spliceosomal protein s 97.0 0.0012 2.5E-08 65.7 5.7 79 364-447 11-89 (221)
49 KOG4212 RNA-binding protein hn 97.0 0.0026 5.6E-08 68.7 8.4 72 365-442 47-118 (608)
50 KOG0144 RNA-binding protein CU 96.9 0.0014 3E-08 70.5 5.9 79 364-446 36-115 (510)
51 KOG0132 RNA polymerase II C-te 96.9 0.0024 5.2E-08 72.5 7.7 79 362-452 421-499 (894)
52 KOG0145 RNA-binding protein EL 96.8 0.0043 9.4E-08 63.6 8.1 80 360-445 276-355 (360)
53 KOG0148 Apoptosis-promoting RN 96.8 0.0066 1.4E-07 62.5 9.1 89 350-450 151-240 (321)
54 KOG0144 RNA-binding protein CU 96.7 0.002 4.4E-08 69.3 5.1 84 363-450 125-208 (510)
55 KOG0148 Apoptosis-promoting RN 96.7 0.0035 7.6E-08 64.4 6.4 64 367-432 67-130 (321)
56 KOG0127 Nucleolar protein fibr 96.6 0.0031 6.7E-08 69.6 6.2 95 363-463 6-100 (678)
57 KOG0149 Predicted RNA-binding 96.5 0.0041 9E-08 62.5 5.8 79 358-445 8-90 (247)
58 KOG0123 Polyadenylate-binding 96.5 0.005 1.1E-07 64.8 6.4 78 361-445 166-243 (369)
59 KOG0105 Alternative splicing f 96.5 0.0042 9E-08 61.2 5.2 77 362-448 6-83 (241)
60 PF07576 BRAP2: BRCA1-associat 96.4 0.02 4.3E-07 51.4 8.9 84 362-448 12-96 (110)
61 KOG0110 RNA-binding protein (R 96.1 0.0052 1.1E-07 69.1 4.5 81 361-447 612-692 (725)
62 KOG0114 Predicted RNA-binding 96.1 0.029 6.3E-07 51.2 8.1 77 359-444 15-91 (124)
63 KOG0121 Nuclear cap-binding pr 96.0 0.023 4.9E-07 53.4 7.3 80 360-445 34-113 (153)
64 KOG0111 Cyclophilin-type pepti 96.0 0.0073 1.6E-07 60.8 4.1 81 361-447 9-89 (298)
65 KOG4660 Protein Mei2, essentia 95.5 0.0049 1.1E-07 67.8 0.9 40 348-387 347-386 (549)
66 KOG0533 RRM motif-containing p 95.2 0.068 1.5E-06 54.0 7.9 71 359-432 79-150 (243)
67 KOG0804 Cytoplasmic Zn-finger 95.0 0.11 2.3E-06 56.7 8.9 81 362-446 74-154 (493)
68 KOG0120 Splicing factor U2AF, 94.9 0.024 5.1E-07 62.3 4.1 103 347-455 273-376 (500)
69 KOG0110 RNA-binding protein (R 94.6 0.12 2.5E-06 58.8 8.4 86 354-446 507-596 (725)
70 KOG0130 RNA-binding protein RB 94.6 0.083 1.8E-06 50.2 6.1 121 324-450 24-154 (170)
71 KOG0146 RNA-binding protein ET 93.8 0.077 1.7E-06 54.9 4.5 71 360-432 283-353 (371)
72 KOG0126 Predicted RNA-binding 93.2 0.013 2.8E-07 57.6 -2.0 69 362-432 35-103 (219)
73 KOG2314 Translation initiation 92.8 0.22 4.9E-06 55.7 6.5 71 362-433 58-132 (698)
74 KOG0131 Splicing factor 3b, su 92.6 0.32 7E-06 48.0 6.6 83 360-449 94-178 (203)
75 KOG0109 RNA-binding protein LA 92.0 0.17 3.8E-06 52.8 4.2 80 348-443 64-145 (346)
76 KOG0109 RNA-binding protein LA 92.0 0.16 3.5E-06 53.0 4.0 83 364-462 4-88 (346)
77 KOG0415 Predicted peptidyl pro 90.8 0.37 8E-06 51.7 5.2 69 362-432 239-307 (479)
78 KOG0226 RNA-binding proteins [ 90.1 0.38 8.3E-06 49.5 4.5 62 369-432 197-258 (290)
79 KOG0106 Alternative splicing f 89.5 0.4 8.7E-06 47.9 4.0 70 364-447 3-72 (216)
80 KOG1457 RNA binding protein (c 87.2 2.5 5.5E-05 43.2 8.0 87 361-450 33-120 (284)
81 KOG0124 Polypyrimidine tract-b 86.3 1 2.2E-05 48.7 4.8 70 362-433 113-182 (544)
82 KOG0153 Predicted RNA-binding 84.7 3.3 7.1E-05 44.4 7.6 76 361-447 227-302 (377)
83 KOG4205 RNA-binding protein mu 84.2 1.1 2.4E-05 46.9 3.9 58 364-423 99-156 (311)
84 KOG0116 RasGAP SH3 binding pro 84.1 1.8 4E-05 47.0 5.7 63 362-426 288-350 (419)
85 KOG4205 RNA-binding protein mu 84.0 1.2 2.7E-05 46.6 4.2 72 360-433 4-79 (311)
86 KOG2416 Acinus (induces apopto 82.8 2 4.4E-05 48.7 5.5 77 363-447 445-521 (718)
87 KOG0151 Predicted splicing reg 82.2 2.2 4.8E-05 49.2 5.6 85 358-446 170-255 (877)
88 PF11608 Limkain-b1: Limkain b 80.3 5.2 0.00011 35.5 6.0 73 363-449 3-78 (90)
89 KOG4211 Splicing factor hnRNP- 78.6 4.5 9.8E-05 44.9 6.3 63 361-425 102-164 (510)
90 KOG1190 Polypyrimidine tract-b 77.8 4 8.8E-05 44.7 5.5 80 360-448 412-491 (492)
91 KOG0124 Polypyrimidine tract-b 77.2 4.6 0.0001 43.9 5.7 64 362-427 210-273 (544)
92 KOG0147 Transcriptional coacti 76.2 6.6 0.00014 44.1 6.7 71 388-477 477-547 (549)
93 KOG4209 Splicing factor RNPS1, 75.6 5.7 0.00012 39.9 5.6 82 360-448 99-180 (231)
94 KOG0106 Alternative splicing f 72.8 3.9 8.5E-05 41.0 3.7 78 351-442 88-165 (216)
95 KOG1365 RNA-binding protein Fu 71.6 6 0.00013 43.2 4.9 81 361-447 279-361 (508)
96 PF08777 RRM_3: RNA binding mo 68.7 11 0.00023 33.5 5.1 59 363-429 2-60 (105)
97 KOG3152 TBP-binding protein, a 66.1 8.4 0.00018 40.0 4.5 69 363-433 75-155 (278)
98 KOG1548 Transcription elongati 60.7 28 0.00061 37.7 7.2 86 359-450 131-223 (382)
99 KOG0146 RNA-binding protein ET 60.2 27 0.0006 36.9 6.9 81 364-448 21-101 (371)
100 KOG1457 RNA binding protein (c 59.8 10 0.00022 39.0 3.7 69 358-432 206-274 (284)
101 KOG4211 Splicing factor hnRNP- 59.7 23 0.0005 39.7 6.6 66 355-425 3-68 (510)
102 KOG0120 Splicing factor U2AF, 58.8 27 0.00058 39.2 7.0 52 389-444 431-488 (500)
103 KOG0128 RNA-binding protein SA 57.2 2.7 5.9E-05 49.2 -0.9 86 363-454 668-753 (881)
104 KOG1190 Polypyrimidine tract-b 56.2 47 0.001 36.8 8.1 76 363-449 299-374 (492)
105 KOG2193 IGF-II mRNA-binding pr 55.1 16 0.00035 40.5 4.5 70 364-445 3-73 (584)
106 KOG4454 RNA binding protein (R 50.7 10 0.00023 38.8 2.1 66 364-433 11-76 (267)
107 PF04847 Calcipressin: Calcipr 47.1 35 0.00075 33.4 5.0 51 389-450 21-73 (184)
108 KOG4206 Spliceosomal protein s 44.7 77 0.0017 32.3 7.1 78 359-446 143-220 (221)
109 COG5105 MIH1 Mitotic inducer, 39.5 76 0.0016 34.5 6.4 97 373-477 243-344 (427)
110 KOG2591 c-Mpl binding protein, 39.2 51 0.0011 37.8 5.3 63 359-431 172-244 (684)
111 KOG0129 Predicted RNA-binding 36.6 78 0.0017 35.8 6.2 65 358-425 366-432 (520)
112 KOG4661 Hsp27-ERE-TATA-binding 36.5 1.5E+02 0.0032 34.6 8.3 77 364-446 407-483 (940)
113 PF03468 XS: XS domain; Inter 34.5 99 0.0021 28.1 5.6 59 364-427 10-81 (116)
114 PF15023 DUF4523: Protein of u 33.2 60 0.0013 31.6 4.1 65 360-430 84-149 (166)
115 KOG1456 Heterogeneous nuclear 31.2 1.8E+02 0.0039 32.3 7.7 83 361-448 405-491 (494)
116 KOG4307 RNA binding protein RB 31.0 1.8E+02 0.0039 34.6 8.0 72 359-432 864-935 (944)
117 COG5175 MOT2 Transcriptional r 29.3 81 0.0018 34.5 4.7 82 362-447 114-202 (480)
118 PF14026 DUF4242: Protein of u 24.9 3.9E+02 0.0084 22.6 7.2 66 365-431 3-71 (77)
119 KOG0105 Alternative splicing f 20.9 3.5E+02 0.0075 27.7 7.0 62 363-433 116-177 (241)
120 KOG1548 Transcription elongati 20.5 3.4E+02 0.0075 29.8 7.3 67 362-432 265-340 (382)
121 COG1571 Predicted DNA-binding 20.4 1.5E+02 0.0032 33.0 4.7 91 373-464 176-273 (421)
122 KOG4019 Calcineurin-mediated s 20.2 1.3E+02 0.0027 30.3 3.8 84 360-454 8-96 (193)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.9e-62 Score=513.67 Aligned_cols=368 Identities=46% Similarity=0.657 Sum_probs=278.4
Q ss_pred HHHHHHHhhchhhhhhhhcccccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCCCCCCCCCccccccccCCCC
Q 009947 6 FMVSLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLAT 85 (522)
Q Consensus 6 ~~r~lm~q~~~eleqde~~~~~~~~gsp~~nsppg~w~~~~sp~~~~~l~~~s~s~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (522)
+||.+|.|.+ ..|..|+++|++|+|||+|. .++.+|.|+|+
T Consensus 148 ~~~~~~~~~~--------~~~~~~~~~p~a~s~pgg~~---------------~~~~~g~l~P~---------------- 188 (549)
T KOG4660|consen 148 ARRAMGLQSG--------TSFLNHFGSPLANSPPGGWP---------------RGQLFGMLSPT---------------- 188 (549)
T ss_pred ccccchhccc--------chhhhhccchhhcCCCCCCc---------------CCcceeeeccc----------------
Confidence 3555555554 67888999999999999997 44556668887
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCCcccccCCCccccccccccccccccccCCcccCCCCcccccCCCCCCCCCCCCCCCC
Q 009947 86 PTPVNSNHLPGLASILPPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNS 165 (522)
Q Consensus 86 ~~~~~~~~~~g~~s~~p~~~s~~~~~~~ig~~~~~~~~~~~~f~~~~~~~~~~~~~~hS~pe~~~~~~~g~~s~~g~s~s 165 (522)
.+ +|++.++++.-.-.+. ...++..| |.|.+ + ...-+|.++|... |..++
T Consensus 189 ----~s-------~~~~~~~~~~~~~~~~-~~~~~~~h--q~~~~--~----~~~~s~a~~~~~~----------G~~~s 238 (549)
T KOG4660|consen 189 ----RS-------SILLEHISSVDGSSPG-RETPLLNH--QRFVE--F----ADNRSYAFSEPRG----------GFLIS 238 (549)
T ss_pred ----hh-------hhhhhcchhccCcccc-ccccchhh--hhhhh--h----ccccchhhcccCC----------ceecC
Confidence 22 2444444333333233 66666666 44432 1 1124457777722 77788
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccccC
Q 009947 166 NSSGVGTLSGPQFLWGSPPPYSERSSSSAWPTSSVGHPFSSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFG 245 (522)
Q Consensus 166 ~~~~~~~l~g~~~~W~~~~~~~~~~~~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hhvgSap~~~p~~r~~~ 245 (522)
+..++.|++|+ .++| +++. ...+.......++|||||+||+.
T Consensus 239 ~~~~v~t~S~~---------------~g~~------n~~~---------~~r~~~~~~~~~~~~hi~~~Ps~-------- 280 (549)
T KOG4660|consen 239 NSSGVITFSGP---------------GGVW------NPFP---------SRRQRQNSSSSHYEHHIGSAPSM-------- 280 (549)
T ss_pred CCCceEEecCC---------------Cccc------CCcc---------ccccccccCcccccCccCCCccc--------
Confidence 88899999998 3455 2222 11122333446789999999991
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC--CCccc-CCCCCcCCCCCCCCcCCCCCCCCCcccCCCCC-CCCCCC
Q 009947 246 FFPESPETSFTNPVPLGGMGLSRNNAGYMMNVG--GRVGV-GLPLNVTDNGSPSLRMMSFPRHGPLFFGNGSY-SGLGTT 321 (522)
Q Consensus 246 ~~~~sp~~s~~~~~~~g~~g~~~~~g~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~f~~g~~-~~~~~~ 321 (522)
.|...-+++++.+-.|++.++.. +..|+ ...++.+|..+++++|.+.++... .|. ++. .....+
T Consensus 281 ----------~~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~-~f~-~~~~~~~~~~ 348 (549)
T KOG4660|consen 281 ----------HHLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPK-NFE-GRRSYTSQND 348 (549)
T ss_pred ----------ccccccCccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCc-ccc-cccccccccc
Confidence 12223344455555555533322 33443 577899999999999999999987 786 332 222223
Q ss_pred CCcccccccccccccCCCCccCCCcccccCchhhccCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCC
Q 009947 322 SNEAFTERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFK 401 (522)
Q Consensus 322 ~~~~~~er~r~~r~~~~~~q~~~~~q~~ldl~rI~~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFk 401 (522)
......+..|.||......+.. ++++.+|+++|++|++.|||+||||||||||++||++. ||..+|+|||+||||||+
T Consensus 349 ~~~~~~~~~~~~Rtt~~i~ni~-n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~ 426 (549)
T KOG4660|consen 349 YPVELILNYRDRRTTVMIKNIP-NKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFK 426 (549)
T ss_pred cccccccccccchhhhhhhccc-cchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccc
Confidence 3334445888888777655555 88999999999999999999999999999999999999 999999999999999999
Q ss_pred CCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEEeecccChHHHHHhhccCCccCCCCCccceEEecCCCCC
Q 009947 402 NKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFHSEGQET 481 (522)
Q Consensus 402 nkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsYAriQGk~ALi~hFrNSsVm~e~~~~RPilF~s~Gp~~ 481 (522)
|+||||||||||+++++|++|+++|||++|++|+++|+|+|+|||||||++|++|||||++|||++.|+|++|++ |+.
T Consensus 427 nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~d 504 (549)
T KOG4660|consen 427 NKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PED 504 (549)
T ss_pred cccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred CCccccCCCCcceeec
Q 009947 482 SDQEALLSSNLNIFIR 497 (522)
Q Consensus 482 G~~Epfp~~~~~~~~~ 497 (522)
|.+|++|... ++..+
T Consensus 505 g~~~~~p~~~-~~~a~ 519 (549)
T KOG4660|consen 505 GREEPEPVKL-NQDAG 519 (549)
T ss_pred ccccCccccc-cccCC
Confidence 9999999886 65533
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=1.7e-45 Score=317.32 Aligned_cols=97 Identities=66% Similarity=1.209 Sum_probs=96.2
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
|||||||||||||||+||+++||+.+.|+||||||||||+++||+|||||||+++++|.+|+++|+|++|+.++|+|+|+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccChHHHHHhhc
Q 009947 442 LAYARIQGQAALVTHFQ 458 (522)
Q Consensus 442 VsYAriQGk~ALi~hFr 458 (522)
|+|||+||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=8.9e-12 Score=125.04 Aligned_cols=83 Identities=24% Similarity=0.416 Sum_probs=79.7
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.|.||.|+|.++|..+||++|+.++... |+++-+.|..|..++..+||+|||+++++||++++..+||.++. .|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ----~K 111 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ----NK 111 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec----cc
Confidence 4789999999999999999999999876 89999999999999999999999999999999999999999998 89
Q ss_pred EEEEEeecc
Q 009947 439 VASLAYARI 447 (522)
Q Consensus 439 Vc~VsYAri 447 (522)
+++|+|||-
T Consensus 112 TIKVSyARP 120 (360)
T KOG0145|consen 112 TIKVSYARP 120 (360)
T ss_pred eEEEEeccC
Confidence 999999984
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.10 E-value=5.4e-10 Score=101.84 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=78.3
Q ss_pred cCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 357 SGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 357 ~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
++.+..|+|.|+|||..+|+++|+++|..+ |+..-+.++.|..+..+.|||||.|.+.++|..+++.+||+...
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~---- 102 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHF--GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN---- 102 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----
Confidence 345778999999999999999999999975 78899999999999999999999999999999999999999887
Q ss_pred ccEEEEEeecc
Q 009947 437 EKVASLAYARI 447 (522)
Q Consensus 437 ~KVc~VsYAri 447 (522)
.+.+.|.||+-
T Consensus 103 Gr~l~V~~a~~ 113 (144)
T PLN03134 103 GRHIRVNPAND 113 (144)
T ss_pred CEEEEEEeCCc
Confidence 78899999864
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.09 E-value=2.8e-10 Score=112.67 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=76.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
|.+|||+|+|||.++|+++|+++|.++ |+..-+.|..|..++.+.|||||.|.+.++|.++++.+||+.+. .|.
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~--G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~----g~~ 74 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSI--GEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ----NKT 74 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHcc--CCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC----Cee
Confidence 569999999999999999999999986 89999999999999999999999999999999999999999987 788
Q ss_pred EEEEeecc
Q 009947 440 ASLAYARI 447 (522)
Q Consensus 440 c~VsYAri 447 (522)
+.|.||+-
T Consensus 75 i~v~~a~~ 82 (352)
T TIGR01661 75 IKVSYARP 82 (352)
T ss_pred EEEEeecc
Confidence 99999863
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.95 E-value=1.6e-08 Score=104.27 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=76.4
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....|||.|+|||.++|+++|+++|.++ |.+.-+.|..|..++.+.|||||.|.++++|.++++.++|..+. .|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~--G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~----gr 177 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTI--GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR----NK 177 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC----Cc
Confidence 4578999999999999999999999985 78888999999999999999999999999999999999999886 78
Q ss_pred EEEEEeecc
Q 009947 439 VASLAYARI 447 (522)
Q Consensus 439 Vc~VsYAri 447 (522)
.+.|.||+-
T Consensus 178 ~i~V~~a~p 186 (346)
T TIGR01659 178 RLKVSYARP 186 (346)
T ss_pred eeeeecccc
Confidence 899999864
No 7
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.1e-09 Score=105.04 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=78.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.|.-.||.|-|||..+++.+|.+++..+ |.+--+||-+|-.|+...|||||+|.+.++|.++++.+||+.|. .-
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~f--g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd----~L 259 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPF--GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD----NL 259 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhcc--CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc----eE
Confidence 4566799999999999999999998876 89999999999999999999999999999999999999999999 78
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
++.|+||+-|
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 9999999865
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.85 E-value=1.2e-08 Score=77.71 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=61.0
Q ss_pred EEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 365 LMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 365 LMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
|.|+|||..+|+++|++++.+. |....+.+..+ .++...|||||-|.+.++|.++++.++|+.|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~--g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF--GKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT--STEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHh--hhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 6899999999999999999985 88888888888 78889999999999999999999999999987
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.82 E-value=1.3e-08 Score=100.91 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=73.5
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
+|.|+|||...|+++|+++|..+ |.+..+.++.|..|+...|||||.|.++++|..+++.+||+.+. .|.++|.
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~f--G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~----gr~i~V~ 344 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGPF--GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG----NRVLQVS 344 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEE
Confidence 59999999999999999999976 88999999999999999999999999999999999999999997 8999999
Q ss_pred eecc
Q 009947 444 YARI 447 (522)
Q Consensus 444 YAri 447 (522)
|+.-
T Consensus 345 ~~~~ 348 (352)
T TIGR01661 345 FKTN 348 (352)
T ss_pred EccC
Confidence 9854
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=98.74 E-value=5.4e-08 Score=71.98 Aligned_cols=71 Identities=25% Similarity=0.363 Sum_probs=60.3
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
||.|+|||..+++++|++++.+. |....+.+..+. +.+.|||||.|.++++|.++++.++|..+. .+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~--g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~----~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF--GPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG----GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc--CCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC----CEEEee
Confidence 68999999999999999999875 666666666665 678999999999999999999999998886 455544
No 11
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.70 E-value=1.2e-08 Score=96.50 Aligned_cols=93 Identities=20% Similarity=0.368 Sum_probs=60.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeec--cc-CC-CCcceeEEEEeccChhhHHHHHHHhcCCccccC
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLP--ID-FK-NKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 434 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLP--iD-Fk-nkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~f 434 (522)
+..+++|.||+||+.+|++++++.|+......++|-|+. .+ .. ..+-..+|||+|.+.+++..|.+.|+|+.|.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 356889999999999999999998887444554444544 22 22 234579999999999999999999999999876
Q ss_pred -CCccEEEEEeecccChH
Q 009947 435 -NSEKVASLAYARIQGQA 451 (522)
Q Consensus 435 -nS~KVc~VsYAriQGk~ 451 (522)
.....+.|+||..|-.-
T Consensus 84 kg~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQKVP 101 (176)
T ss_dssp TS-EEEEEEEE-SS----
T ss_pred CCCCcceeEEEcchhccc
Confidence 45689999999997653
No 12
>smart00360 RRM RNA recognition motif.
Probab=98.70 E-value=5.7e-08 Score=71.44 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=62.1
Q ss_pred EecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 367 IKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 367 IRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
|+|||..+++++|++++... |....+.++.+..++.+.|||||.|.+.++|..+++.++|..+. .+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~--g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~----~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF--GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD----GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh--CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC----CcEEEe
Confidence 68999999999999999865 78888999888888999999999999999999999999998875 555554
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.67 E-value=9.7e-08 Score=98.56 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=78.2
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..|||.|.|||..+|+++|+++|.++ |+...+.++.|..++..+|||||.|.+.++|+++++++||..++ ...+.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~f--G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~--g~~~~l 267 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKY--GQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE--GGSQPL 267 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhc--CCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC--CCceeE
Confidence 46899999999999999999999875 78888889999999999999999999999999999999999886 235789
Q ss_pred EEEeecccChH
Q 009947 441 SLAYARIQGQA 451 (522)
Q Consensus 441 ~VsYAriQGk~ 451 (522)
.|.+|.-+++.
T Consensus 268 ~V~~a~~~~~~ 278 (346)
T TIGR01659 268 TVRLAEEHGKA 278 (346)
T ss_pred EEEECCccccc
Confidence 99999988764
No 14
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.66 E-value=1.6e-07 Score=69.78 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=65.4
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
+|+|++||..++.++|++++... |....++++.+..+ ...|||||.|.++++|..+++.+++..+. .+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~--g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~----~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF--GKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELG----GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc--CCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEe
Confidence 58999999999999999999886 78888998887766 56899999999999999999999999876 6777776
Q ss_pred e
Q 009947 444 Y 444 (522)
Q Consensus 444 Y 444 (522)
|
T Consensus 74 ~ 74 (74)
T cd00590 74 F 74 (74)
T ss_pred C
Confidence 4
No 15
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.63 E-value=1.3e-07 Score=84.47 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=76.8
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
..||.|+|||.++|+++|.+++.+. |....+.++.|..++...|||||.|.+.+++..+++.++|..|. .+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~--g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~----~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF--GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE----GRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc--CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC----CceeE
Confidence 5899999999999999999999986 78889999999989999999999999999999999999999998 89999
Q ss_pred EEeec--ccChH
Q 009947 442 LAYAR--IQGQA 451 (522)
Q Consensus 442 VsYAr--iQGk~ 451 (522)
|.+++ .+.+.
T Consensus 189 v~~~~~~~~~~~ 200 (306)
T COG0724 189 VQKAQPASQPRS 200 (306)
T ss_pred eecccccccccc
Confidence 99976 44443
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.63 E-value=9.4e-08 Score=101.99 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=72.2
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
++|.|+|||.++|+++|.++|.++ |...-+-+..|..|+.+.|||||+|.++++|.++++.++++.+. .|.+.|
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~----gk~i~i 74 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG----GKPIRI 74 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeeEEe
Confidence 489999999999999999999986 78888999999999999999999999999999999999999776 788899
Q ss_pred Eeec
Q 009947 443 AYAR 446 (522)
Q Consensus 443 sYAr 446 (522)
.|+.
T Consensus 75 ~~s~ 78 (562)
T TIGR01628 75 MWSQ 78 (562)
T ss_pred eccc
Confidence 8874
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.62 E-value=1.1e-07 Score=98.24 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=73.7
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
.+||.|+|||..+|+++|+++|..+ |....+.|+.|..++.+.|||||.|.++++|.++++.++|..+. .+.+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~--G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~----g~~i~ 259 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPF--GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA----GRPIK 259 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC----CEEEE
Confidence 6899999999999999999999875 78899999999999889999999999999999999999998886 78999
Q ss_pred EEeec
Q 009947 442 LAYAR 446 (522)
Q Consensus 442 VsYAr 446 (522)
|.||.
T Consensus 260 v~~a~ 264 (457)
T TIGR01622 260 VGYAQ 264 (457)
T ss_pred EEEcc
Confidence 99986
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.62 E-value=1.3e-07 Score=73.57 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=57.4
Q ss_pred EEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 365 LMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 365 LMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
|+|+|||...|.++|++.+... |....+.+..+.. +...|+|||.|.++++|.++++..+|..|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~--g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF--GPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS--SBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHhc--CCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 7899999999999999999886 6788888888866 788999999999999999999999988886
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.59 E-value=1.8e-07 Score=97.60 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=76.3
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..++|.|.|||..+|+++|+++|..+ |.+.-+.|..|..++.+.|||||.|.++++|..+++.++|..+. .+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~----~~ 365 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESF--GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG----DN 365 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----Ce
Confidence 4567899999999999999999999986 78888888899999999999999999999999999999999987 77
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.||..+
T Consensus 366 ~l~v~~a~~~ 375 (509)
T TIGR01642 366 KLHVQRACVG 375 (509)
T ss_pred EEEEEECccC
Confidence 8999999754
No 20
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.49 E-value=1.9e-07 Score=91.82 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=78.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
|.-|+|.|-||-+..|.++|..+|++. |+.--||+|.|-.|+...|||||-|.+..+|+++.++++|..+. .+.
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekY--G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld----gRe 84 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKY--GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD----GRE 84 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHh--CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec----cce
Confidence 668999999999999999999999986 88889999999999999999999999999999999999999998 888
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|..|+.--
T Consensus 85 lrVq~arygr 94 (256)
T KOG4207|consen 85 LRVQMARYGR 94 (256)
T ss_pred eeehhhhcCC
Confidence 8888888643
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.44 E-value=6.2e-07 Score=95.81 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=74.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..-++|.|+|||..+|+++|+++|.++ |....+.+..| .++.+.|||||.|.++++|.++++.+||+.+. .|.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~--G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~----gk~ 355 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSEC--GEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG----GKP 355 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhc--CCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC----Cce
Confidence 345789999999999999999999986 78999999999 67889999999999999999999999998887 899
Q ss_pred EEEEeecc
Q 009947 440 ASLAYARI 447 (522)
Q Consensus 440 c~VsYAri 447 (522)
+.|.||.-
T Consensus 356 l~V~~a~~ 363 (562)
T TIGR01628 356 LYVALAQR 363 (562)
T ss_pred eEEEeccC
Confidence 99999964
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.39 E-value=1.9e-06 Score=89.07 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=68.9
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
...||.|+|||.++|+++|+++|..+ |+..-+.|+.|..++.+.|||||.|.+.++|.++++ ++|..+. .+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~--G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~----g~~i 160 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKV--GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL----GRPI 160 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC----Ceee
Confidence 45699999999999999999999986 689999999999999999999999999999999996 8898886 5566
Q ss_pred EEEee
Q 009947 441 SLAYA 445 (522)
Q Consensus 441 ~VsYA 445 (522)
.|.++
T Consensus 161 ~v~~~ 165 (457)
T TIGR01622 161 IVQSS 165 (457)
T ss_pred EEeec
Confidence 66654
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.38 E-value=1.1e-06 Score=96.98 Aligned_cols=81 Identities=9% Similarity=0.055 Sum_probs=74.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...++|.|+|||..+++++|+++|..+ |....+.|+.|..++...|||||.|.+.++|.++++.+||..|. .+.
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~F--G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg----Gr~ 275 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQY 275 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 345799999999999999999999975 89999999999999999999999999999999999999999987 788
Q ss_pred EEEEeec
Q 009947 440 ASLAYAR 446 (522)
Q Consensus 440 c~VsYAr 446 (522)
+.|.+|.
T Consensus 276 LrV~kAi 282 (612)
T TIGR01645 276 LRVGKCV 282 (612)
T ss_pred EEEEecC
Confidence 8888865
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.30 E-value=1.4e-06 Score=95.77 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=63.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
+..|+|.|.|||..+|+++|+++|.+. |..--+.|.+| .++.+.|||||.|.++++|.++++.+||+...
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~--G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~ 125 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKA--GPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR 125 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhh--CCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeec
Confidence 456999999999999999999999986 67667889999 78999999999999999999999999988764
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.26 E-value=2e-06 Score=95.17 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=72.8
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..++|.|+|||..+|+++|+++|..+ |.+.-+.++.|..++.+.|||||.|.++++|.+.++.+||+.+. .+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~f--G~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~----GR 177 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPF--GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG----GR 177 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHcc--CCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe----cc
Confidence 3567899999999999999999999985 78888999999999999999999999999999999999999887 66
Q ss_pred EEEEEee
Q 009947 439 VASLAYA 445 (522)
Q Consensus 439 Vc~VsYA 445 (522)
.+.|.++
T Consensus 178 ~IkV~rp 184 (612)
T TIGR01645 178 NIKVGRP 184 (612)
T ss_pred eeeeccc
Confidence 6667653
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.13 E-value=9.6e-06 Score=86.25 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=68.8
Q ss_pred CccceEEEecCCC-ccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPN-KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPN-KyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
...+||+|+|||. ++|+++|.++|..+ |...-+.+..|. .|||||.|.++++|..+++.+||..+. .|
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~y--G~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~----g~ 341 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVY--GNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLF----GK 341 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 3468999999997 79999999999986 788888777662 499999999999999999999999997 79
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|++|+.+
T Consensus 342 ~l~v~~s~~~ 351 (481)
T TIGR01649 342 PLRVCPSKQQ 351 (481)
T ss_pred eEEEEEcccc
Confidence 9999999765
No 27
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.10 E-value=1.1e-05 Score=81.25 Aligned_cols=75 Identities=12% Similarity=0.200 Sum_probs=67.3
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
.+||.|.|||.+.|+++|+++|... |+..-+.|+.|-. ..|||||.|.+++++..++. ++|..+. .+.|.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~--G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~----gr~V~ 73 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS--GDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIV----DQSVT 73 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeC----CceEE
Confidence 4699999999999999999999764 8999999998864 35999999999999999995 9999987 88999
Q ss_pred EEeec
Q 009947 442 LAYAR 446 (522)
Q Consensus 442 VsYAr 446 (522)
|.+|+
T Consensus 74 Vt~a~ 78 (260)
T PLN03120 74 ITPAE 78 (260)
T ss_pred EEecc
Confidence 99875
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.01 E-value=1.8e-05 Score=87.25 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=65.3
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||..+|+++|+++|.++..|++.-+-+ ..|||||.|.+.++|.++++.+||+.+. .+.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~--------~rgfAFVeF~s~e~A~kAi~~lnG~~i~----Gr~I 299 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK--------IRDYAFVHFEDREDAVKAMDELNGKELE----GSEI 299 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe--------ecCeEEEEeCCHHHHHHHHHHhCCCEEC----CEEE
Confidence 357899999999999999999999764466665533 2479999999999999999999999997 8999
Q ss_pred EEEeeccc
Q 009947 441 SLAYARIQ 448 (522)
Q Consensus 441 ~VsYAriQ 448 (522)
+|+||+-.
T Consensus 300 ~V~~Akp~ 307 (578)
T TIGR01648 300 EVTLAKPV 307 (578)
T ss_pred EEEEccCC
Confidence 99999764
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.93 E-value=3.3e-05 Score=82.21 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=64.6
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccC--CCcc
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF--NSEK 438 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~f--nS~K 438 (522)
...||.|+|||..+|+++|++++.+. |......+.+..+.....|+|||.|.+.++|.+++..+||+....- .--.
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~--G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~ 470 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAEN--GVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPY 470 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhc--CCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccc
Confidence 34689999999999999999999986 5522322222212222579999999999999999999999998732 1224
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|+||+.+
T Consensus 471 ~lkv~fs~~~ 480 (481)
T TIGR01649 471 HLKVSFSTSR 480 (481)
T ss_pred eEEEEeccCC
Confidence 7999999753
No 30
>smart00361 RRM_1 RNA recognition motif.
Probab=97.93 E-value=2.7e-05 Score=62.25 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcC--CCcCceEe-ecccCCC--CcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 376 SKMLLAAIDENH--RGTYDFLY-LPIDFKN--KCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 376 q~mLl~iIDe~~--~G~YDFlY-LPiDFkn--kcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
+++|++.|.+.+ .|++--++ +.+|..+ +...|||||.|.+.++|.++++.+||+.+. .+++.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~----gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD----GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEe
Confidence 578888888432 47887776 7787766 788999999999999999999999999887 555543
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.77 E-value=4.9e-05 Score=81.42 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=69.2
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
-|-||||+...|+++|+++|.++ |+.+-+--|.| ||||-|.+.++|+++++..||+.++ .-.++|+
T Consensus 261 vLYVRNL~~~tTeE~lk~~F~~~--G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeld----G~~iEvt 326 (506)
T KOG0117|consen 261 VLYVRNLMESTTEETLKKLFNEF--GKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELD----GSPIEVT 326 (506)
T ss_pred eeeeeccchhhhHHHHHHHHHhc--cceEEeecccc--------eeEEeecchHHHHHHHHHhcCceec----CceEEEE
Confidence 57899999999999999999997 89998888866 9999999999999999999999998 7889999
Q ss_pred eecccChHH
Q 009947 444 YARIQGQAA 452 (522)
Q Consensus 444 YAriQGk~A 452 (522)
.|+-|-++.
T Consensus 327 LAKP~~k~k 335 (506)
T KOG0117|consen 327 LAKPVDKKK 335 (506)
T ss_pred ecCChhhhc
Confidence 999988764
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=6.9e-05 Score=80.35 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=68.6
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
.-|-|-|--||.++.+++|+-++++. |++=-|-|=||.-++.|+|||||-|++.+.|.++++.+|++... +.|.+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEki--G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir---~GK~i 156 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKI--GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR---PGKLL 156 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhc--cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc---CCCEe
Confidence 46789999999999999999999987 66656778899889999999999999999999999999999775 46665
Q ss_pred EEEe
Q 009947 441 SLAY 444 (522)
Q Consensus 441 ~VsY 444 (522)
.||-
T Consensus 157 gvc~ 160 (506)
T KOG0117|consen 157 GVCV 160 (506)
T ss_pred EEEE
Confidence 5554
No 33
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.62 E-value=0.00027 Score=75.91 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=76.2
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
.+|-|+|||...+++.|.+++.+. |..=-+-+-.|..|+...||||+.|++.+++.+.++.+||.... ..+++|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~--g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~----gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV--GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN----GRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc--CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC----CceEEe
Confidence 689999999999999999999975 55555677889999999999999999999999999999999886 788999
Q ss_pred EeecccChHHHHHhhccC
Q 009947 443 AYARIQGQAALVTHFQNS 460 (522)
Q Consensus 443 sYAriQGk~ALi~hFrNS 460 (522)
.||.-=-.++...-+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~ 110 (435)
T KOG0108|consen 93 NYASNRKNAERSLASHNA 110 (435)
T ss_pred ecccccchhHHHHhhccc
Confidence 998643333333334444
No 34
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.62 E-value=0.00022 Score=73.56 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=77.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
|.-.||.|-.|+...++..|+.+|..+ |.+--|-|..|..|+...|||||-|.+..+...+|+.-+|.+.. .+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~Y--G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id----grr 172 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKY--GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID----GRR 172 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhc--CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec----CcE
Confidence 888999999999999999999999986 89999999999999999999999999999999999999999998 899
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
|.|-|-+-|
T Consensus 173 i~VDvERgR 181 (335)
T KOG0113|consen 173 ILVDVERGR 181 (335)
T ss_pred EEEEecccc
Confidence 998886543
No 35
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=97.61 E-value=0.00016 Score=75.41 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=69.8
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
+.|+--.|-|-|||=+|.+.||+++|.++ |+. +=+=|-|..+.+.||+||.|.+++||++..++++|...+ .
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kf--G~V--ldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE----G 163 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKF--GKV--LDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE----G 163 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhh--Cce--eeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee----c
Confidence 45666689999999999999999999986 443 335667888999999999999999999999999999988 7
Q ss_pred cEEEEEeecc
Q 009947 438 KVASLAYARI 447 (522)
Q Consensus 438 KVc~VsYAri 447 (522)
.+++|.-|..
T Consensus 164 RkIEVn~ATa 173 (376)
T KOG0125|consen 164 RKIEVNNATA 173 (376)
T ss_pred eEEEEeccch
Confidence 7788887653
No 36
>PLN03213 repressor of silencing 3; Provisional
Probab=97.48 E-value=0.00039 Score=75.71 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=68.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccCh--hhHHHHHHHhcCCccccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSP--SHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~sp--e~a~~F~~~FnGkkW~~fnS~ 437 (522)
...++|-|.||+..+|+++|.++|.++ |+..-+++|. .++ +|||||+|.+. +.+.+.+..+||..|. .
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeF--GsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWK----G 77 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPM--GTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK----G 77 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeec----C
Confidence 456899999999999999999999987 8999999982 244 99999999988 7899999999999998 7
Q ss_pred cEEEEEeecc
Q 009947 438 KVASLAYARI 447 (522)
Q Consensus 438 KVc~VsYAri 447 (522)
..+.|.=|+-
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 7888888864
No 37
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.42 E-value=0.00035 Score=76.66 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=70.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+.+-.|+|||+|=++...+|..++..+ |++=-+.+|..+..+.- |||||-|++..+|...++.|||.+.. ...
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~--G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~----gR~ 187 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNF--GKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKID----GRP 187 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhc--ceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceec----Cce
Confidence 347899999999999999999999876 77777889987776544 99999999999999999999999998 777
Q ss_pred EEEEeec
Q 009947 440 ASLAYAR 446 (522)
Q Consensus 440 c~VsYAr 446 (522)
+.|-||-
T Consensus 188 VAVDWAV 194 (678)
T KOG0127|consen 188 VAVDWAV 194 (678)
T ss_pred eEEeeec
Confidence 8899984
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.41 E-value=0.00062 Score=68.41 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=57.8
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
.||-|.||+.+.|+++|.+.|.. .|+...++|+.|-.++ |+|||.|.+++++...+ .++|..+.
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~--~G~I~~V~I~~D~et~---gfAfVtF~d~~aaetAl-lLnGa~l~ 69 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSH--CGAIEHVEIIRSGEYA---CTAYVTFKDAYALETAV-LLSGATIV 69 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHh--cCCeEEEEEecCCCcc---eEEEEEECCHHHHHHHH-hcCCCeeC
Confidence 69999999999999999999986 4999999999995554 79999999999997777 89999887
No 39
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.37 E-value=0.00062 Score=51.65 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=44.1
Q ss_pred HHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEEee
Q 009947 379 LLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYA 445 (522)
Q Consensus 379 Ll~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsYA 445 (522)
|++++.++ |+..-+.+.-+- .|+|||.|.+.++|..+++.+||..|. .+.+.|.||
T Consensus 1 L~~~f~~f--G~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF--GEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT--S-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCc--ccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 55666665 666655442221 599999999999999999999999997 789999997
No 40
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.24 E-value=0.00097 Score=70.06 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=61.0
Q ss_pred cceEEEecCCCcc----------CHHHHHHHHhhcCCCcCceEeecccC---CCCcceeEEEEeccChhhHHHHHHHhcC
Q 009947 362 RTTLMIKNIPNKY----------TSKMLLAAIDENHRGTYDFLYLPIDF---KNKCNVGYAFINMVSPSHIISFYEAFNG 428 (522)
Q Consensus 362 RTTLMIRNIPNKy----------Tq~mLl~iIDe~~~G~YDFlYLPiDF---knkcNvGYAFVNF~spe~a~~F~~~FnG 428 (522)
-.+|.|.|++..- ..++|++++.. .|...-+.+|.+. .+...+|+|||.|.+.++|.++++.+||
T Consensus 409 s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~--~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 409 TKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK--YGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred ceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh--cCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 3478899986321 12344455544 4888889998653 4456789999999999999999999999
Q ss_pred CccccCCCccEEEEEeecc
Q 009947 429 KKWEKFNSEKVASLAYARI 447 (522)
Q Consensus 429 kkW~~fnS~KVc~VsYAri 447 (522)
.++. .+++.|+|...
T Consensus 487 r~~~----gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFN----DRVVVAAFYGE 501 (509)
T ss_pred CEEC----CeEEEEEEeCH
Confidence 9997 88899999754
No 41
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.00062 Score=66.06 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=61.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+.-|+|-|-||+++.|..+|..+|..+ |..--+.+ -...-|||||.|.++.||++++..++|+.+- .-.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~y--G~lrsvWv-----ArnPPGfAFVEFed~RDA~DAvr~LDG~~~c----G~r 76 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKY--GPLRSVWV-----ARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC----GSR 76 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhc--CcceeEEE-----eecCCCceEEeccCcccHHHHHhhcCCcccc----Cce
Confidence 457899999999999999999999875 44333332 2345799999999999999999999999876 444
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|+..+-+.
T Consensus 77 ~rVE~S~G~~ 86 (195)
T KOG0107|consen 77 IRVELSTGRP 86 (195)
T ss_pred EEEEeecCCc
Confidence 5565555443
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.21 E-value=0.00037 Score=76.16 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=72.0
Q ss_pred EEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEEe
Q 009947 365 LMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAY 444 (522)
Q Consensus 365 LMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsY 444 (522)
|-+.||=-.+|.+||+.+++.+ |+++++-|++|-.|+.+.||+||.|.+.++|..|.+..||.....+ .=|||.|.+
T Consensus 281 l~vgnLHfNite~~lr~ifepf--g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr-~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPF--GKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGR-LIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCc--ccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCc-eEEEEEeee
Confidence 7889999999999999999986 8999999999999999999999999999999999999999555433 357888887
Q ss_pred ecccC
Q 009947 445 ARIQG 449 (522)
Q Consensus 445 AriQG 449 (522)
---|.
T Consensus 358 r~~~~ 362 (549)
T KOG0147|consen 358 RVDTK 362 (549)
T ss_pred ecccc
Confidence 54443
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.17 E-value=0.00088 Score=72.20 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=61.8
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
.-|+|.|||+|-.||-+||++-|.|. |..+ |.-| -.+...+| -|.|.++++|++++..++|.+++ ...+
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~--G~v~--yadi-me~GkskG--VVrF~s~edAEra~a~Mngs~l~----Gr~I 603 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREI--GHVL--YADI-MENGKSKG--VVRFFSPEDAERACALMNGSRLD----GRNI 603 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhc--ccee--hhhh-hccCCccc--eEEecCHHHHHHHHHHhccCccc----Ccee
Confidence 45789999999999999999999997 4444 4444 44666777 89999999999999999999998 7778
Q ss_pred EEEee
Q 009947 441 SLAYA 445 (522)
Q Consensus 441 ~VsYA 445 (522)
.|.|+
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 88874
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.16 E-value=0.00036 Score=67.97 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.|.-.||-|-||+.|+|++.|.+++-.. |..=-+++|.|..+...-|||||.|.+.++|.-.++.||..|+- .|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqa--gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY----gr 79 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQA--GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY----GR 79 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhc--CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc----Cc
Confidence 4566799999999999999999988653 67777999999999999999999999999999999999988876 67
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
.+.|.=|.
T Consensus 80 pIrv~kas 87 (203)
T KOG0131|consen 80 PIRVNKAS 87 (203)
T ss_pred eeEEEecc
Confidence 77776655
No 45
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=97.12 E-value=0.00031 Score=74.14 Aligned_cols=74 Identities=19% Similarity=0.397 Sum_probs=62.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeec-ccCCCCc-ceeEEEEeccChhhHHHHHHHhcCCccccC
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLP-IDFKNKC-NVGYAFINMVSPSHIISFYEAFNGKKWEKF 434 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLP-iDFknkc-NvGYAFVNF~spe~a~~F~~~FnGkkW~~f 434 (522)
+....|.||++|+++|++.|++.|+. +...+.|.|+- -|+.... -++.|||||..++++..|.+.|+|+.+-..
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 44568999999999999999999998 56777787764 5655433 379999999999999999999999998753
No 46
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.00096 Score=70.09 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=58.2
Q ss_pred CccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEEeec
Q 009947 372 NKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYAR 446 (522)
Q Consensus 372 NKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsYAr 446 (522)
.+.|..||.+++... |..-.+-|=.|. | .+|||||||.++++|.++++++|..... .|.+.|-|..
T Consensus 8 ~~v~e~~l~~~f~~~--~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~----~~~~rim~s~ 73 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPA--GPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK----GKPIRIMWSQ 73 (369)
T ss_pred CcCChHHHHHHhccc--CCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC----CcEEEeehhc
Confidence 788999999999875 677777777888 7 9999999999999999999999998886 8888888863
No 47
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.09 E-value=0.0014 Score=64.72 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
...++-+.++.||.-+.+..++..+.++. |..--+-|-..-+|+.+.|||||-|.+++.|.-.++++|++.+- ++
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~-g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~----e~ 120 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFG-GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM----EH 120 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcC-CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh----hh
Confidence 45678899999999999999999988764 77777778788999999999999999999999999999999987 78
Q ss_pred EEEEEeecc
Q 009947 439 VASLAYARI 447 (522)
Q Consensus 439 Vc~VsYAri 447 (522)
.++|.|=.-
T Consensus 121 lL~c~vmpp 129 (214)
T KOG4208|consen 121 LLECHVMPP 129 (214)
T ss_pred eeeeEEeCc
Confidence 887777543
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.99 E-value=0.0012 Score=65.68 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=68.5
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
||.|+||+.|+--++|+..|...+ .+|+=+-=..-+++..-+|=|||-|.+.+.|-.+.++++|..+- .|++.|.
T Consensus 11 TlYInnLnekI~~~elkrsL~~LF-sqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy----gK~mriq 85 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLF-SQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY----GKPMRIQ 85 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHH-HhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc----Cchhhee
Confidence 999999999999999999776643 45664444556788889999999999999999999999999987 9999999
Q ss_pred eecc
Q 009947 444 YARI 447 (522)
Q Consensus 444 YAri 447 (522)
||+-
T Consensus 86 yA~s 89 (221)
T KOG4206|consen 86 YAKS 89 (221)
T ss_pred cccC
Confidence 9974
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.96 E-value=0.0026 Score=68.73 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=64.8
Q ss_pred EEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 365 LMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 365 LMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
+-|.|||..|.-++|++++.|+. |+..|+-|-+|- +...+|-|-|.|+++|.+++..+.+|-+.|. ...+.|
T Consensus 47 vfItNIpyd~rWqdLKdLvrekv-Gev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~----GR~l~v 118 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKV-GEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVN----GRELVV 118 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhc-CceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhcccc----CceEEE
Confidence 99999999999999999999974 999999999996 5667899999999999999999999999997 555555
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.92 E-value=0.0014 Score=70.52 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=68.7
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc-cccCCCccEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK-WEKFNSEKVASL 442 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk-W~~fnS~KVc~V 442 (522)
++-|--||...|+++|+++|+++ |..+-+-|+.|..|+...|||||.|.+.++|.+++.+++..+ ++. -.-.++|
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG--~~~pvqv 111 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG--MHHPVQV 111 (510)
T ss_pred hheeccCCccccHHHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC--CCcceee
Confidence 67889999999999999999997 788899999999999999999999999999999999998754 332 2345677
Q ss_pred Eeec
Q 009947 443 AYAR 446 (522)
Q Consensus 443 sYAr 446 (522)
.||-
T Consensus 112 k~Ad 115 (510)
T KOG0144|consen 112 KYAD 115 (510)
T ss_pred cccc
Confidence 7774
No 51
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=96.88 E-value=0.0024 Score=72.46 Aligned_cols=79 Identities=25% Similarity=0.307 Sum_probs=70.3
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
-|||.|.-||.+++|.+|.++|+++ |...-+-| --|+|-|||-+...++|.+..++|+.++.. .|++.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef--GeiqSi~l------i~~R~cAfI~M~~RqdA~kalqkl~n~kv~----~k~Ik 488 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF--GEIQSIIL------IPPRGCAFIKMVRRQDAEKALQKLSNVKVA----DKTIK 488 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc--ccceeEee------ccCCceeEEEEeehhHHHHHHHHHhccccc----ceeeE
Confidence 6899999999999999999999997 67765544 246899999999999999999999999887 89999
Q ss_pred EEeecccChHH
Q 009947 442 LAYARIQGQAA 452 (522)
Q Consensus 442 VsYAriQGk~A 452 (522)
|+||.-=|.++
T Consensus 489 i~Wa~g~G~ks 499 (894)
T KOG0132|consen 489 IAWAVGKGPKS 499 (894)
T ss_pred EeeeccCCcch
Confidence 99999888766
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=96.79 E-value=0.0043 Score=63.64 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=72.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..--.|.|=|+-..-++.-|.+++..+ |...-+.+-.||.|..=.||+||.|++.+.|.-++..+||+++. .||
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpF--GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg----~rv 349 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG----DRV 349 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcc--cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc----ceE
Confidence 345578899999999999999999876 89999999999997666899999999999999999999999998 999
Q ss_pred EEEEee
Q 009947 440 ASLAYA 445 (522)
Q Consensus 440 c~VsYA 445 (522)
++|+|-
T Consensus 350 LQVsFK 355 (360)
T KOG0145|consen 350 LQVSFK 355 (360)
T ss_pred EEEEEe
Confidence 999974
No 53
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0066 Score=62.46 Aligned_cols=89 Identities=16% Similarity=0.323 Sum_probs=73.2
Q ss_pred cCchhhcc-CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcC
Q 009947 350 LDLDKIIS-GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNG 428 (522)
Q Consensus 350 ldl~rI~~-G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnG 428 (522)
+..|.|.+ ...+.|||-+-||++-+|+++|++.|+.+ |.+--+-+ |+.+ |||||.|.+.|.|.+++-..||
T Consensus 151 ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f--G~I~EVRv---Fk~q---GYaFVrF~tkEaAahAIv~mNn 222 (321)
T KOG0148|consen 151 LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF--GPIQEVRV---FKDQ---GYAFVRFETKEAAAHAIVQMNN 222 (321)
T ss_pred ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC--CcceEEEE---eccc---ceEEEEecchhhHHHHHHHhcC
Confidence 66677754 45789999999999999999999999876 55544322 4444 9999999999999999999999
Q ss_pred CccccCCCccEEEEEeecccCh
Q 009947 429 KKWEKFNSEKVASLAYARIQGQ 450 (522)
Q Consensus 429 kkW~~fnS~KVc~VsYAriQGk 450 (522)
.... .-++++.|.+-++-
T Consensus 223 tei~----G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 223 TEIG----GQLVRCSWGKEGDD 240 (321)
T ss_pred ceeC----ceEEEEeccccCCC
Confidence 9887 78888999887664
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.69 E-value=0.002 Score=69.31 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=72.4
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
-+|-|+-|+.+.|+.++.+++..+ |.+.-+|+-.|. -+..+|||||.|.+.+.|+.+++++||.. ....+.-.+.|
T Consensus 125 ~KLFvg~lsK~~te~evr~iFs~f--G~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~-tmeGcs~PLVV 200 (510)
T KOG0144|consen 125 RKLFVGMLSKQCTENEVREIFSRF--GHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQ-TMEGCSQPLVV 200 (510)
T ss_pred hhhhhhhccccccHHHHHHHHHhh--Cccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccce-eeccCCCceEE
Confidence 378999999999999999999986 899999988876 45578999999999999999999999964 33467888999
Q ss_pred EeecccCh
Q 009947 443 AYARIQGQ 450 (522)
Q Consensus 443 sYAriQGk 450 (522)
.||-.|..
T Consensus 201 kFADtqkd 208 (510)
T KOG0144|consen 201 KFADTQKD 208 (510)
T ss_pred EecccCCC
Confidence 99977643
No 55
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0035 Score=64.39 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=56.0
Q ss_pred EecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 367 IKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 367 IRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
+--+-..++-+.|++.+-.+ |+.--.-+..|-.|....||+||.|.+.++|+.+++.+||.++.
T Consensus 67 vgdls~eI~~e~lr~aF~pF--GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG 130 (321)
T KOG0148|consen 67 VGDLSPEIDNEKLREAFAPF--GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG 130 (321)
T ss_pred ehhcchhcchHHHHHHhccc--cccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec
Confidence 33444566778999999876 78888899999999999999999999999999999999998876
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=96.65 E-value=0.0031 Score=69.56 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=77.7
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
.||-|++||...|++.|-+.+... |.|--.|+..+-.+..++||+||.|.-.+|+.+.+....+.+++ ..++.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~v--GPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~----Gr~l~v 79 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYV--GPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE----GRILNV 79 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcc--cCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc----ceeccc
Confidence 799999999999999999999876 89999999999999999999999999999999999999888887 666777
Q ss_pred EeecccChHHHHHhhccCCcc
Q 009947 443 AYARIQGQAALVTHFQNSSLM 463 (522)
Q Consensus 443 sYAriQGk~ALi~hFrNSsVm 463 (522)
..|.---...-++.-+|..|-
T Consensus 80 ~~A~~R~r~e~~~~~e~~~ve 100 (678)
T KOG0127|consen 80 DPAKKRARSEEVEKGENKAVE 100 (678)
T ss_pred ccccccccchhcccccchhhh
Confidence 776433222224444444443
No 57
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=96.53 E-value=0.0041 Score=62.55 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=67.6
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHh----cCCcccc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAF----NGKKWEK 433 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~F----nGkkW~~ 433 (522)
++.+-|+|-|-.||-.-+.+.|++.|+.+ |++--.-+..|..++.++||+||.|+|.+.|.++.+.- +|++-+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqf--GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN- 84 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQF--GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN- 84 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHh--CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc-
Confidence 34567999999999999999999999987 78888888999999999999999999999999998864 466543
Q ss_pred CCCccEEEEEee
Q 009947 434 FNSEKVASLAYA 445 (522)
Q Consensus 434 fnS~KVc~VsYA 445 (522)
|.++|.
T Consensus 85 ------cnlA~l 90 (247)
T KOG0149|consen 85 ------CNLASL 90 (247)
T ss_pred ------cchhhh
Confidence 666664
No 58
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.005 Score=64.84 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=68.6
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
.-|.+.++|.+.+.|+++|++.++.. |+...+-++.|-..+ +.||+||+|.+++++..+++..+|...+ .|..
T Consensus 166 ~~t~v~vk~~~~~~~~~~l~~~f~~~--g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~l~~~~~~----~~~~ 238 (369)
T KOG0123|consen 166 RFTNVYVKNLEEDSTDEELKDLFSAY--GSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVETLNGKIFG----DKEL 238 (369)
T ss_pred hhhhhheeccccccchHHHHHhhccc--CcceEEEEeecCCCC-CCCccceeecChhHHHHHHHhccCCcCC----ccce
Confidence 36789999999999999999999986 899999999987777 9999999999999999999999999887 5656
Q ss_pred EEEee
Q 009947 441 SLAYA 445 (522)
Q Consensus 441 ~VsYA 445 (522)
-|.-|
T Consensus 239 ~V~~a 243 (369)
T KOG0123|consen 239 YVGRA 243 (369)
T ss_pred eeccc
Confidence 66533
No 59
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.46 E-value=0.0042 Score=61.22 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=64.7
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCc-ceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKC-NVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkc-NvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
-.+|-+-|||..+.++++.++|-++ |++-+ ||.|+.- ...||||.|.++.+|++++..-+|+-+. ...+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKy--g~i~~----ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd----g~rL 75 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKY--GRIRE----IELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD----GCRL 75 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhh--cceEE----EEeccCCCCCCeeEEEecCccchhhhhhcccccccC----cceE
Confidence 3578999999999999999999876 56554 4556655 4799999999999999999999999988 7788
Q ss_pred EEEeeccc
Q 009947 441 SLAYARIQ 448 (522)
Q Consensus 441 ~VsYAriQ 448 (522)
.|++|+-=
T Consensus 76 RVEfprgg 83 (241)
T KOG0105|consen 76 RVEFPRGG 83 (241)
T ss_pred EEEeccCC
Confidence 99998753
No 60
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.42 E-value=0.02 Score=51.37 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=62.6
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
+|+|-|=-+|+.++..+++..+-+.......-+.+..|. .-|.-=+-|.|.++++|..||+.|||+++...-. -+|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~Ch 88 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETCH 88 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-ceeE
Confidence 456666677888877665555555555666666666664 4578889999999999999999999999987654 5599
Q ss_pred EEee-ccc
Q 009947 442 LAYA-RIQ 448 (522)
Q Consensus 442 VsYA-riQ 448 (522)
|.|- +||
T Consensus 89 vvfV~~Ve 96 (110)
T PF07576_consen 89 VVFVKSVE 96 (110)
T ss_pred EEEEEEEE
Confidence 9884 454
No 61
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.15 E-value=0.0052 Score=69.14 Aligned_cols=81 Identities=17% Similarity=0.370 Sum_probs=66.8
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
.-|.|.|||||---|.+++..++..+ |..=-+=||.-+.....+|+|||.|.++++|..+++++....+- ...+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aF--GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly----GRrL 685 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAF--GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY----GRRL 685 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcc--cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee----chhh
Confidence 36899999999999999999999875 66666667777556667999999999999999999999865544 5667
Q ss_pred EEEeecc
Q 009947 441 SLAYARI 447 (522)
Q Consensus 441 ~VsYAri 447 (522)
.++||..
T Consensus 686 VLEwA~~ 692 (725)
T KOG0110|consen 686 VLEWAKS 692 (725)
T ss_pred heehhcc
Confidence 7899864
No 62
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.10 E-value=0.029 Score=51.16 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=58.0
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..--|-|||+|-++|.+++.++|.+. |+.- -++|. .++.-.|-|||-+.+..+|.++.+.++|.-.. ..
T Consensus 15 pevnriLyirNLp~~ITseemydlFGky--g~Ir--QIRiG-~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~----~r 85 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKY--GTIR--QIRIG-NTKETRGTAFVVYEDIFDAKKACDHLSGYNVD----NR 85 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcc--cceE--EEEec-CccCcCceEEEEehHhhhHHHHHHHhcccccC----Cc
Confidence 3444568999999999999999999764 3332 23333 24556799999999999999999999998766 34
Q ss_pred EEEEEe
Q 009947 439 VASLAY 444 (522)
Q Consensus 439 Vc~VsY 444 (522)
-+.|-|
T Consensus 86 yl~vly 91 (124)
T KOG0114|consen 86 YLVVLY 91 (124)
T ss_pred eEEEEe
Confidence 455555
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=96.03 E-value=0.023 Score=53.41 Aligned_cols=80 Identities=13% Similarity=0.248 Sum_probs=72.6
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
-.-+||-|-||.--.|++.+-+++..- |..--+-|=.|-.++...|||||.|-+.++|+.+.+-.+|.+++ +++
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~c--G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd----dr~ 107 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKC--GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD----DRP 107 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhc--cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc----ccc
Confidence 456899999999999999999999874 78888888899989999999999999999999999999999998 888
Q ss_pred EEEEee
Q 009947 440 ASLAYA 445 (522)
Q Consensus 440 c~VsYA 445 (522)
+.|.|-
T Consensus 108 ir~D~D 113 (153)
T KOG0121|consen 108 IRIDWD 113 (153)
T ss_pred eeeecc
Confidence 888773
No 64
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0073 Score=60.83 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=71.8
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
.+-||-|--+-..+|++-|-+.+-.+ |.+--+-+|+|..+...+|||||.|...+||..+++-+|+..+- .+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPF--GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~----Grti 82 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPF--GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF----GRTI 82 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccc--cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc----ceeE
Confidence 35588888888889988888877654 88888999999999999999999999999999999999998775 8999
Q ss_pred EEEeecc
Q 009947 441 SLAYARI 447 (522)
Q Consensus 441 ~VsYAri 447 (522)
.|.||+.
T Consensus 83 rVN~AkP 89 (298)
T KOG0111|consen 83 RVNLAKP 89 (298)
T ss_pred EEeecCC
Confidence 9999974
No 65
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.49 E-value=0.0049 Score=67.78 Aligned_cols=40 Identities=43% Similarity=0.583 Sum_probs=34.1
Q ss_pred cccCchhhccCCCccceEEEecCCCccCHHHHHHHHhhcC
Q 009947 348 YQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENH 387 (522)
Q Consensus 348 ~~ldl~rI~~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~ 387 (522)
+..-.+.|++..|.|||+||+||||++++.+|.+|+|..+
T Consensus 347 ~~~~~~~~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~ 386 (549)
T KOG4660|consen 347 NDYPVELILNYRDRRTTVMIKNIPNKYGQLDLLRILDGEC 386 (549)
T ss_pred cccccccccccccchhhhhhhccccchhHHHHHHHHhCcC
Confidence 3334566778899999999999999999999999999764
No 66
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=95.22 E-value=0.068 Score=54.03 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCcc-ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 359 EDTR-TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 359 ~D~R-TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
.++| |+|+|-|+|..+++++|+++|.++. ..--+-|=.| .++..+|-|=|-|...+||++.++.|+|..+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~--~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld 150 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFG--ELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALD 150 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhc--cceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccC
Confidence 4666 9999999999999999999999872 2211111122 35667899999999999999999999997776
No 67
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.95 E-value=0.11 Score=56.73 Aligned_cols=81 Identities=28% Similarity=0.363 Sum_probs=67.1
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
-|+|-|=-+|+.+|.-+|+..+..+..-=-|+-.++ | ..-|.--+-|.|.+.++|..||+.|||+.+...-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 688999999999999999999987654455566666 3 445677789999999999999999999999876655 999
Q ss_pred EEeec
Q 009947 442 LAYAR 446 (522)
Q Consensus 442 VsYAr 446 (522)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99864
No 68
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.95 E-value=0.024 Score=62.32 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=81.4
Q ss_pred ccccCchhhcc-CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHH
Q 009947 347 QYQLDLDKIIS-GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEA 425 (522)
Q Consensus 347 q~~ldl~rI~~-G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~ 425 (522)
++.+++..... ..+.--.+-|-+||..+++..++++|+++ |.+==+-|-+|-.+.-|.||||-+|+++-.....+..
T Consensus 273 ~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f--g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~ag 350 (500)
T KOG0120|consen 273 LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF--GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAG 350 (500)
T ss_pred ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc--ccchhheeecccccccccceeeeeeeCCcchhhhhcc
Confidence 45555544432 34566677889999999999999999997 5555556677877888999999999999999999999
Q ss_pred hcCCccccCCCccEEEEEeecccChHHHHH
Q 009947 426 FNGKKWEKFNSEKVASLAYARIQGQAALVT 455 (522)
Q Consensus 426 FnGkkW~~fnS~KVc~VsYAriQGk~ALi~ 455 (522)
.||.+.. .|++.|..|-.+.+.+.+.
T Consensus 351 LnGm~lg----d~~lvvq~A~~g~~~~~~~ 376 (500)
T KOG0120|consen 351 LNGMQLG----DKKLVVQRAIVGASNANVN 376 (500)
T ss_pred cchhhhc----CceeEeehhhccchhcccc
Confidence 9999998 7888888776665554333
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.62 E-value=0.12 Score=58.79 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=66.2
Q ss_pred hhccCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcc----eeEEEEeccChhhHHHHHHHhcCC
Q 009947 354 KIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCN----VGYAFINMVSPSHIISFYEAFNGK 429 (522)
Q Consensus 354 rI~~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcN----vGYAFVNF~spe~a~~F~~~FnGk 429 (522)
++..-++.-|+|.|+|++-.-|++.|...+.. .|.+=-+-++.- +..|| +|||||-|.++++|...++.++|.
T Consensus 507 ~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k--~G~VlS~~I~kk-kd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 507 RVAEDEETETKLFVKNLNFDTTLEDLEDLFSK--QGTVLSIEISKK-KDPANKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred hhhhccccchhhhhhcCCcccchhHHHHHHHh--cCeEEEEEEecc-ccccccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 44455667788999999999999999999986 354433333332 23444 499999999999999999999999
Q ss_pred ccccCCCccEEEEEeec
Q 009947 430 KWEKFNSEKVASLAYAR 446 (522)
Q Consensus 430 kW~~fnS~KVc~VsYAr 446 (522)
... +-.++|.++.
T Consensus 584 vld----GH~l~lk~S~ 596 (725)
T KOG0110|consen 584 VLD----GHKLELKISE 596 (725)
T ss_pred eec----CceEEEEecc
Confidence 988 6666777766
No 70
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=94.57 E-value=0.083 Score=50.21 Aligned_cols=121 Identities=19% Similarity=0.353 Sum_probs=94.2
Q ss_pred cccccccccccccCCCCccCCCcccccCchhhcc-CCCcc---------ceEEEecCCCccCHHHHHHHHhhcCCCcCce
Q 009947 324 EAFTERGRTRRVENCGSQVDSKKQYQLDLDKIIS-GEDTR---------TTLMIKNIPNKYTSKMLLAAIDENHRGTYDF 393 (522)
Q Consensus 324 ~~~~er~r~~r~~~~~~q~~~~~q~~ldl~rI~~-G~D~R---------TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDF 393 (522)
..+.|....+++..-+...++..+-.++.+.++. |.|.| --|.|-+|=..-|++++-+.|.++ |++--
T Consensus 24 ~~~~e~Akk~kGRGf~~e~~sr~r~r~~yd~vee~~s~~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dy--GeiKN 101 (170)
T KOG0130|consen 24 AGLKEKAKKRKGRGFGSEKDSRRRRRLSYDDVEEDGSDMRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADY--GEIKN 101 (170)
T ss_pred HHHHHHHHhhcCCCcccccchHHHhhhhhhhHhhcccccCCCCccceeeEEEEEeccCcchhHHHHHHHHhhc--ccccc
Confidence 3444544445555555666666666777777653 33333 357899999999999999999876 78888
Q ss_pred EeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEEeecccCh
Q 009947 394 LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQ 450 (522)
Q Consensus 394 lYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsYAriQGk 450 (522)
+-|-.|-+|+--.|||.|.+.+.+.|..++++.||.-+- ...++|.||=+-|+
T Consensus 102 ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll----~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 102 IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL----GQNVSVDWCFVKGP 154 (170)
T ss_pred eeeccccccccccceeeeehHhHHHHHHHHHhccchhhh----CCceeEEEEEecCC
Confidence 999999999999999999999999999999999998765 55678899877766
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=93.76 E-value=0.077 Score=54.94 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=62.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
.+-+.|.|-.+|..+++.+|++++-.+ |.+=--.+=+|..|..+..|+||.|-++..+...++++||....
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PF--GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG 353 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPF--GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG 353 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccc--cceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh
Confidence 445789999999999999999999875 55544555678899999999999999999999999999999887
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.18 E-value=0.013 Score=57.61 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=63.4
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
-.=|-|-+||..+|+.+++.+|.++ |..=-+-|-.|-+|+.+.||||.-+.+....+-+++-|||.+.-
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqy--Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~ 103 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQY--GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL 103 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeecc--CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec
Confidence 3468899999999999999999986 77778899999999999999999999999999999999999886
No 73
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.80 E-value=0.22 Score=55.67 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=58.5
Q ss_pred cceEEEecCCCcc--CHHHHHHHHhhcC--CCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcccc
Q 009947 362 RTTLMIKNIPNKY--TSKMLLAAIDENH--RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 433 (522)
Q Consensus 362 RTTLMIRNIPNKy--Tq~mLl~iIDe~~--~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~ 433 (522)
-+-|.|-+||--= -.+-|+.+|.+.+ .|+.-=+|.|+|-.++ -+||+|+.+.++.+|...++.+||+++.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 4589999999633 2455666665532 4788889999999999 78999999999999999999999999985
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=92.58 E-value=0.32 Score=48.01 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=65.3
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCC--CcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHR--GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~--G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
|.-..|.|+|+-..++++.|.+++..+.. ..-.-|++| .|+...|+|||||.+-+.+.+.+...||+... .
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~---~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~----n 166 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP---DTGNPKGFGFINYASFEASDAAIGSMNGQYLC----N 166 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccc---cCCCCCCCeEEechhHHHHHHHHHHhccchhc----C
Confidence 33467889999999999999999998631 222344444 36777899999999999999999999999876 6
Q ss_pred cEEEEEeecccC
Q 009947 438 KVASLAYARIQG 449 (522)
Q Consensus 438 KVc~VsYAriQG 449 (522)
....|+||.--+
T Consensus 167 r~itv~ya~k~~ 178 (203)
T KOG0131|consen 167 RPITVSYAFKKD 178 (203)
T ss_pred CceEEEEEEecC
Confidence 667889986433
No 75
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=92.04 E-value=0.17 Score=52.82 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=63.0
Q ss_pred cccCchhhccCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcc--eeEEEEeccChhhHHHHHHH
Q 009947 348 YQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCN--VGYAFINMVSPSHIISFYEA 425 (522)
Q Consensus 348 ~~ldl~rI~~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcN--vGYAFVNF~spe~a~~F~~~ 425 (522)
+.|++++-.+-...+|||-|-||-.++|-++|++.+.+. + ....|- .+|+||-|...++|...++.
T Consensus 64 ~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~y-----g-------pviecdivkdy~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 64 VNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKY-----G-------PVIECDIVKDYAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred eEEEEEeccccCCCccccccCCCCccccCHHHhhhhccc-----C-------CceeeeeecceeEEEEeeccchHHHHhc
Confidence 456677666656689999999999999999999998864 2 123343 58999999999999999999
Q ss_pred hcCCccccCCCccEEEEE
Q 009947 426 FNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 426 FnGkkW~~fnS~KVc~Vs 443 (522)
++|..++ .|.+.|.
T Consensus 132 l~~~~~~----gk~m~vq 145 (346)
T KOG0109|consen 132 LDNTEFQ----GKRMHVQ 145 (346)
T ss_pred ccccccc----cceeeee
Confidence 9988887 5555443
No 76
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=92.00 E-value=0.16 Score=53.04 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=63.1
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcc--eeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCN--VGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcN--vGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
+|-|-|+|.+.|..+|+.+|+.+ |+. ..|- .-|+||-..+...+...++-++|+++. ++++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~y--gkV----------lECDIvKNYgFVHiEdktaaedairNLhgYtLh----g~nIn 67 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQY--GKV----------LECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLH----GVNIN 67 (346)
T ss_pred chhccCCCcccchHHHHHHHHhh--Cce----------EeeeeecccceEEeecccccHHHHhhcccceec----ceEEE
Confidence 57899999999999999999986 333 2221 359999999999999999999999998 88888
Q ss_pred EEeecccChHHHHHhhccCCc
Q 009947 442 LAYARIQGQAALVTHFQNSSL 462 (522)
Q Consensus 442 VsYAriQGk~ALi~hFrNSsV 462 (522)
|+-++---|..-.-|.-|-+.
T Consensus 68 VeaSksKsk~stkl~vgNis~ 88 (346)
T KOG0109|consen 68 VEASKSKSKASTKLHVGNISP 88 (346)
T ss_pred EEeccccCCCccccccCCCCc
Confidence 887765444333333334333
No 77
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.37 Score=51.67 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=60.7
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
-..|.|--|-+-.|.++|--||..+ |++--+=+..|++|+..+-||||.|.+.+.++++|-++++....
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrF--G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRF--GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhc--ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 4467777787777888888888775 88988999999999999999999999999999999999998877
No 78
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=90.09 E-value=0.38 Score=49.53 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=51.3
Q ss_pred cCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 369 NIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 369 NIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
-+=|..+.+.|-..+.++ -.|-=-.+-.|.+|....||.||.|.++.|++++...++|+--.
T Consensus 197 dlgNevnd~vl~raf~Kf--psf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 197 DLGNEVNDDVLARAFKKF--PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred cccccccHHHHHHHHHhc--cchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 456788888888888875 23444456789999999999999999999999999999998655
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=89.51 E-value=0.4 Score=47.92 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=56.8
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
.|-|.+||++..+++|.+++.+. |++.-+ .- -.||+||-|.++.+|...+..+||+.+.. ++ +.|+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~y--g~~~d~------~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~---e~-~vve 68 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGY--GKIPDA------DM--KNGFGFVEFEDPRDADDAVHDLDGKELCG---ER-LVVE 68 (216)
T ss_pred ceeecccCCccchhHHHHHHhhc--cccccc------ee--ecccceeccCchhhhhcccchhcCceecc---ee-eeee
Confidence 57789999999999999999875 555421 11 24788999999999999999999999873 33 8899
Q ss_pred eecc
Q 009947 444 YARI 447 (522)
Q Consensus 444 YAri 447 (522)
||+.
T Consensus 69 ~~r~ 72 (216)
T KOG0106|consen 69 HARG 72 (216)
T ss_pred cccc
Confidence 9985
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=87.24 E-value=2.5 Score=43.24 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=68.7
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCc-ceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKC-NVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkc-NvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
.--||.|--+|+++...+|-.+|.++ .-|+=.-|.+--+.+. -.=.||+.|.+.++|+..++++||.+|+-.. .-+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f--~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~-~st 109 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRF--HGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET-GST 109 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccC--CCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc-Cce
Confidence 34489999999999999999999886 4677666766655532 2368999999999999999999999998543 456
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|+.|+.--|
T Consensus 110 LhiElAKSNtK 120 (284)
T KOG1457|consen 110 LHIELAKSNTK 120 (284)
T ss_pred eEeeehhcCcc
Confidence 78888876443
No 81
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=86.31 E-value=1 Score=48.69 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=64.0
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcccc
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 433 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~ 433 (522)
-+.|-+-.|--.+.+++++..|+.+ |.+--+.+-.|..|....|||||.+.-|+.|.-..+.+||..+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PF--GPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPF--GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCC--CCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 4678889999999999999999986 788888899999999999999999999999999999999998873
No 82
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=84.66 E-value=3.3 Score=44.43 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=58.3
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
.-|||-|+++=+.+++++|++.+-.+ |...++-+-. -.|-|||+|++.+.|+.++++--.+..- ..+.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqy--Geirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI---~G~Rl 295 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQY--GEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVI---NGFRL 295 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhc--CCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeee---cceEE
Confidence 58999999998899999999988875 7777664321 1357999999999999988775443222 26677
Q ss_pred EEEeecc
Q 009947 441 SLAYARI 447 (522)
Q Consensus 441 ~VsYAri 447 (522)
.|.|++-
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 8889876
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=84.15 E-value=1.1 Score=46.94 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=50.9
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHH
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFY 423 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~ 423 (522)
++-|.-||..++.++|++.++.+ |...-+=+++|+.+...+|++||-|.+.+.+.+..
T Consensus 99 kiFvGG~~~~~~e~~~r~yfe~~--g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 99 KIFVGGLPPDTTEEDFKDYFEQF--GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred EEEecCcCCCCchHHHhhhhhcc--ceeEeeEEeecccccccccceeeEeccccccceec
Confidence 56678899999999999999986 67778888999999999999999999988776543
No 84
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=84.15 E-value=1.8 Score=47.02 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=44.9
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHh
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAF 426 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~F 426 (522)
.++|-|+|||-..|..+|.+++-.++.-+=+-+-+.- ....+..||||.|.+.+.+...+++-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~--~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS--PGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEec--cCCCcCceEEEEEeecchhhhhhhcC
Confidence 3459999999999999999999876432333222221 12333499999999999998877764
No 85
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=83.97 E-value=1.2 Score=46.56 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=60.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHH----hcCCcccc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEA----FNGKKWEK 433 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~----FnGkkW~~ 433 (522)
++.++|-|-.|....|++.|++.+. ..|+.+=+++=.|..++..+||.||.|.+++.+..-+.. ++|++.+.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~--~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFS--QFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEP 79 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhc--ccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccc
Confidence 3678999999999999999999993 358888999999999999999999999988877665544 66666664
No 86
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=82.84 E-value=2 Score=48.67 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=62.7
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
.-|.|+||=.-||...|+++|...+.---+| =||. -...|||.|.+.++|..-..+++|.+|...| -|-+.|
T Consensus 445 nvlhI~nLvRPFTlgQLkelL~rtgg~Vee~---WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sN-PK~L~a 516 (718)
T KOG2416|consen 445 NVLHIDNLVRPFTLGQLKELLGRTGGNVEEF---WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSN-PKHLIA 516 (718)
T ss_pred ceEeeecccccchHHHHHHHHhhccCchHHH---HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCC-CceeEe
Confidence 4689999999999999999999876443444 2342 2357899999999999999999999999655 678888
Q ss_pred Eeecc
Q 009947 443 AYARI 447 (522)
Q Consensus 443 sYAri 447 (522)
.|++-
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 99874
No 87
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=82.19 E-value=2.2 Score=49.22 Aligned_cols=85 Identities=12% Similarity=0.217 Sum_probs=66.2
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCC-CcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHR-GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~-G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
|...-|.|-+-||++++++++|+..+..+.. -..--+|-+.+-....-.=-+||-|.+..|+++|.+.++|....
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~---- 245 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM---- 245 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee----
Confidence 4456889999999999999999999976531 13335565666555555566899999999999999999998876
Q ss_pred ccEEEEEeec
Q 009947 437 EKVASLAYAR 446 (522)
Q Consensus 437 ~KVc~VsYAr 446 (522)
+..+.+.|++
T Consensus 246 ~~e~K~gWgk 255 (877)
T KOG0151|consen 246 EYEMKLGWGK 255 (877)
T ss_pred eeeeeecccc
Confidence 5667778875
No 88
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=80.32 E-value=5.2 Score=35.49 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=45.5
Q ss_pred ceEEEecCCCccCHHHHHHHHh---hcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAID---ENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iID---e~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
|.|+|.|+|-..+...++.-|. +.|.|+.=.+ + -|-|.|-|.+++.|.++.+.++|.-- | .-.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdV--f--G~k 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDV--F--GNK 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--S--S--SS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhccccc--c--cce
Confidence 7899999999998877765443 5677776433 1 27899999999999999999998632 2 345
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.|.+.+.
T Consensus 69 I~v~~~~~~r 78 (90)
T PF11608_consen 69 ISVSFSPKNR 78 (90)
T ss_dssp -EEESS--S-
T ss_pred EEEEEcCCcc
Confidence 6788887654
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=78.60 E-value=4.5 Score=44.94 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=51.3
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHH
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEA 425 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~ 425 (522)
.--.|.||=||-.+|++++.+.|.---- .-|=+.||+|..-+ .-|=|||-|.+++.|+.+.+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~I-v~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEI-VPDGILLPMDQRGR-PTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcc-cccceeeeccCCCC-cccceEEEecCHHHHHHHHHH
Confidence 4568999999999999999998864211 22357789999887 899999999999999977654
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=77.75 E-value=4 Score=44.69 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=64.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..-.||-+-|||...++++|++.+.+...----|.+.+.|.+ ||.+-+.+.+.|+...-+.+.+... ..-.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~k------mal~q~~sveeA~~ali~~hnh~lg---en~h 482 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRK------MALPQLESVEEAIQALIDLHNHYLG---ENHH 482 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcc------eeecccCChhHhhhhccccccccCC---CCce
Confidence 455699999999999999999999986432234777788754 9999999999999999888888876 2457
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
++|+|.+.+
T Consensus 483 lRvSFSks~ 491 (492)
T KOG1190|consen 483 LRVSFSKST 491 (492)
T ss_pred EEEEeeccc
Confidence 888887654
No 91
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=77.19 E-value=4.6 Score=43.86 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=55.2
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhc
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFN 427 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~Fn 427 (522)
-..|-+-.|=+++++++++.+|+.+ |++-.+-|-.+...+...||+||.|.+.+.-.+.+..+|
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAF--G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhh--cceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 4567888899999999999999986 899999999999999999999999998776666665555
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=76.22 E-value=6.6 Score=44.12 Aligned_cols=71 Identities=18% Similarity=0.437 Sum_probs=53.5
Q ss_pred CCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEEeecccChHHHHHhhccCCccCCCC
Q 009947 388 RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDK 467 (522)
Q Consensus 388 ~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsYAriQGk~ALi~hFrNSsVm~e~~ 467 (522)
.|+.--+|| | +...|..||-|.+.++|..+++++||.+|. .|++.++|-+.+-.. ..|=++.
T Consensus 477 ~g~v~hi~v--d---~ns~g~VYvrc~s~~~A~~a~~alhgrWF~----gr~Ita~~~~~~~Y~---~~FP~~~------ 538 (549)
T KOG0147|consen 477 HGKVCHIFV--D---KNSAGCVYVRCPSAEAAGTAVKALHGRWFA----GRMITAKYLPLERYH---SKFPDSK------ 538 (549)
T ss_pred cCCeeEEEE--c---cCCCceEEEecCcHHHHHHHHHHHhhhhhc----cceeEEEEeehhhhh---hhCCCcc------
Confidence 366666776 2 233499999999999999999999999998 999999999887543 3444443
Q ss_pred CccceEEecC
Q 009947 468 RCRPIVFHSE 477 (522)
Q Consensus 468 ~~RPilF~s~ 477 (522)
.-|++|++.
T Consensus 539 -~~~~~~~~~ 547 (549)
T KOG0147|consen 539 -AAPLLFHTN 547 (549)
T ss_pred -cceeeeecc
Confidence 346777664
No 93
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=75.57 E-value=5.7 Score=39.91 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=63.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
-+-+.+.|.|+=--.|-+.+...+ + .+|...-+=+|.|.-++...|||||-|.+.+.++..++ ++|.... ...
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf-~-~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~----~~~ 171 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHF-E-SCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP----GPA 171 (231)
T ss_pred cCCceEEEeccccccccchhhhee-e-ccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc----ccc
Confidence 345688888888777766633322 2 24777666788888777799999999999999999999 9998887 667
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
..|++.++.
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 778887765
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=72.85 E-value=3.9 Score=41.05 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=61.5
Q ss_pred CchhhccCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc
Q 009947 351 DLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 430 (522)
Q Consensus 351 dl~rI~~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk 430 (522)
+..+-.-+.-+.+.+.++|++-.+.+++|.+.|... |+. -|. ..+++.|||-|...+++.+.++..+|++
T Consensus 88 ~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~--g~~--~~~------~~~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 88 DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA--GEV--TYV------DARRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhhccCCcccccceeeeccchhhhhHHHHhhhhccc--CCC--chh------hhhccccceeehhhhhhhhcchhccchh
Confidence 344444456778899999999999999999999764 333 121 2278999999999999999999999998
Q ss_pred cccCCCccEEEE
Q 009947 431 WEKFNSEKVASL 442 (522)
Q Consensus 431 W~~fnS~KVc~V 442 (522)
.. .+++.+
T Consensus 158 ~~----~~~l~~ 165 (216)
T KOG0106|consen 158 LN----GRRISV 165 (216)
T ss_pred hc----Cceeee
Confidence 86 566666
No 95
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=71.64 E-value=6 Score=43.22 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=63.2
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCce--EeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF--LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDF--lYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.|-.|.+|-+|..-|.+++++.|+++ .-..|| +-+-++- .+..-|=|||.|++.+++...+++-+.+..+ ..
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdF-a~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk----~R 352 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDF-ATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMK----SR 352 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHH-hhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcc----cc
Confidence 36789999999999999999999986 345666 5555543 4557899999999999999999888877663 55
Q ss_pred EEEEEeecc
Q 009947 439 VASLAYARI 447 (522)
Q Consensus 439 Vc~VsYAri 447 (522)
.|+|--+..
T Consensus 353 YiEvfp~S~ 361 (508)
T KOG1365|consen 353 YIEVFPCSV 361 (508)
T ss_pred eEEEeeccH
Confidence 667755544
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=68.70 E-value=11 Score=33.48 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=35.1
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCC
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGK 429 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGk 429 (522)
+.|-|.++...++.++|+++|.++ +...| +||..+.. -|||-|.+++.|.++++++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~--g~V~y----VD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF--GEVAY----VDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEE----EE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc--CCcce----EEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 357888999999999999999985 45555 45555544 5679999999999888877543
No 97
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=66.14 E-value=8.4 Score=40.01 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=55.2
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCC--------CcceeE----EEEeccChhhHHHHHHHhcCCc
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKN--------KCNVGY----AFINMVSPSHIISFYEAFNGKK 430 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFkn--------kcNvGY----AFVNF~spe~a~~F~~~FnGkk 430 (522)
--|-|-|||++|+..-|++||..+ |..+-+||--.-.+ +.|..+ +.|.|++...|.+-++.+||..
T Consensus 75 GVvylS~IPp~m~~~rlReil~~y--GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQY--GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhc--cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 467899999999999999999964 89999999554332 344444 5699999999999999999876
Q ss_pred ccc
Q 009947 431 WEK 433 (522)
Q Consensus 431 W~~ 433 (522)
...
T Consensus 153 Igg 155 (278)
T KOG3152|consen 153 IGG 155 (278)
T ss_pred cCC
Confidence 653
No 98
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=60.70 E-value=28 Score=37.67 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=66.9
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCC-------CcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHR-------GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKW 431 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~-------G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW 431 (522)
....|.|-|-+||..+|.+++.+++..... |+. -+-|=.|- .+.-.|=|-|-|.-.+.+.-+++.+++.-+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~ep-k~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEP-KVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCe-eEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 356788999999999999999999886421 111 12222332 255679999999999999999999999887
Q ss_pred ccCCCccEEEEEeecccCh
Q 009947 432 EKFNSEKVASLAYARIQGQ 450 (522)
Q Consensus 432 ~~fnS~KVc~VsYAriQGk 450 (522)
. .+.+.|+-|++|-|
T Consensus 209 r----g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 209 R----GKKLRVERAKFQMK 223 (382)
T ss_pred c----CcEEEEehhhhhhc
Confidence 6 88899999999866
No 99
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=60.18 E-value=27 Score=36.87 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=57.0
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
+|.|.=+-..-.++++++++..+ |..|-+-+-.. ..+...|-|||.|.+..+|...+.+++|.+--- ....-+.|.
T Consensus 21 klfvgml~kqq~e~dvrrlf~pf--G~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmp-GASSSLVVK 96 (371)
T KOG0146|consen 21 KLFVGMLNKQQSEDDVRRLFQPF--GNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMP-GASSSLVVK 96 (371)
T ss_pred hhhhhhhcccccHHHHHHHhccc--CCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCC-CCccceEEE
Confidence 45555555566788999999875 77776543221 135567999999999999999999999976432 223446778
Q ss_pred eeccc
Q 009947 444 YARIQ 448 (522)
Q Consensus 444 YAriQ 448 (522)
||..-
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 88653
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=59.81 E-value=10 Score=39.03 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=52.2
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
|.....||.|-|+-..+|+++|+.++..+. -|--|.|--+++ .--||+.|.+-+.|-+.+..+.|..+.
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~----gf~~l~~~~~~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYP----GFHILKIRARGG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCC----CceEEEEecCCC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 344567999999999999999999998652 255566654444 456888888888888888877777654
No 101
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=59.69 E-value=23 Score=39.68 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=48.8
Q ss_pred hccCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHH
Q 009947 355 IISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEA 425 (522)
Q Consensus 355 I~~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~ 425 (522)
|.+-.++---|.+|=||=..|.+++++.|... +==+|+|.+. ++.+.|=|||.|++.+++.++.++
T Consensus 3 i~~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~--~I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 3 IENEGSTAFEVRLRGLPWSATEKEILDFFSNC--GIENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred cccCCCcceEEEecCCCccccHHHHHHHHhcC--ceeEEEEecc---CCCcCcceEEEeechHHHHHHHHh
Confidence 44333444568899999999999999999753 1222555443 567789999999999999988764
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=58.83 E-value=27 Score=39.19 Aligned_cols=52 Identities=13% Similarity=0.393 Sum_probs=38.9
Q ss_pred CcCce---EeecccCCCCc---ceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEEe
Q 009947 389 GTYDF---LYLPIDFKNKC---NVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAY 444 (522)
Q Consensus 389 G~YDF---lYLPiDFknkc---NvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsY 444 (522)
++|+. +-.|.++.+.. -+|=-||.|.+.+++.++++++.|.|+. ..++..+|
T Consensus 431 ~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~----nRtVvtsY 488 (500)
T KOG0120|consen 431 AKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA----NRTVVASY 488 (500)
T ss_pred cccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC----CcEEEEEe
Confidence 55554 45677754433 4799999999999999999999999998 44444444
No 103
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=57.18 E-value=2.7 Score=49.15 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=64.0
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
.|+.++|+++++...+|...+-.. +..+++-+.+-..++.-.||||+-|+.++++.+.+..-.++.+. .+.+.|
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~--~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----K~~v~i 741 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPS--GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----KISVAI 741 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCcc--chhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----hhhhhe
Confidence 367899999999999998877543 56666666555556667899999999999998888777666655 444556
Q ss_pred EeecccChHHHH
Q 009947 443 AYARIQGQAALV 454 (522)
Q Consensus 443 sYAriQGk~ALi 454 (522)
.=-.+||..+-+
T Consensus 742 ~g~pf~gt~e~~ 753 (881)
T KOG0128|consen 742 SGPPFQGTKEEL 753 (881)
T ss_pred eCCCCCCchHHH
Confidence 666899965433
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=56.20 E-value=47 Score=36.84 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=57.7
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
+-|.+.+-+.++|.+-|..+|.-+ |. -.-+-|=++++ --|-|-+-|+..|.-+++.++|++|- .|+++|
T Consensus 299 vllvsnln~~~VT~d~LftlFgvY--Gd--VqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrv 367 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVY--GD--VQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLY----GKKLRV 367 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhh--cc--eEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceec----CceEEE
Confidence 344556667888999999888754 33 23334444444 45999999999999999999999997 799999
Q ss_pred EeecccC
Q 009947 443 AYARIQG 449 (522)
Q Consensus 443 sYAriQG 449 (522)
+|.|-|-
T Consensus 368 t~SKH~~ 374 (492)
T KOG1190|consen 368 TLSKHTN 374 (492)
T ss_pred eeccCcc
Confidence 9998553
No 105
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=55.11 E-value=16 Score=40.48 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=55.0
Q ss_pred eEEEecCCCccCHHHHHHHHhhc-CCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDEN-HRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~-~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
.+-|-|+-+..|..+|..++.+. ..+.=.|| .-.||||||..+..-+.+.++.++|+.= ...|..+|
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~e---lqGkr~e~ 70 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKVE---LQGKRQEV 70 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee---------eecceeeccCCchhhhhhhHHhhchhhh---hcCceeec
Confidence 56788999999999999999764 22233333 2469999999999999999999999863 45788888
Q ss_pred Eee
Q 009947 443 AYA 445 (522)
Q Consensus 443 sYA 445 (522)
.+.
T Consensus 71 ~~s 73 (584)
T KOG2193|consen 71 EHS 73 (584)
T ss_pred cch
Confidence 876
No 106
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=50.67 E-value=10 Score=38.84 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=48.5
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcccc
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 433 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~ 433 (522)
||.|-|+--++|++.|-+++-. .|..==+-+|-|-..+.. ||||+|.+.-.+.-+++..||.++..
T Consensus 11 tl~v~n~~~~v~eelL~Elfiq--aGPV~kv~ip~~~d~~~k--Fa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 11 TLLVQNMYSGVSEELLSELFIQ--AGPVYKVGIPSGQDQEQK--FAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred HHHHHhhhhhhhHHHHHHHhhc--cCceEEEeCCCCccCCCc--eeeeecccccchhhhhhhcccchhcc
Confidence 6778899999997666665533 244334456666555544 99999999999999999999988763
No 107
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=47.09 E-value=35 Score=33.40 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=34.9
Q ss_pred CcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhc--CCccccCCCccEEEEEeecccCh
Q 009947 389 GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFN--GKKWEKFNSEKVASLAYARIQGQ 450 (522)
Q Consensus 389 G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~Fn--GkkW~~fnS~KVc~VsYAriQGk 450 (522)
.-..|.||+ +.++.-|+|.+.+.|.+.++.++ +..+. .+.|.|.||..+..
T Consensus 21 ~~~~~~~L~-------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~----g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 21 PPVQFSPLK-------SFRRIRVVFESPESAQRARQLLHWDGTSFN----GKRLRVYFGQPTPI 73 (184)
T ss_dssp SS-EEEEET-------TTTEEEEE-SSTTHHHHHHHTST--TSEET----TEE-EEE----SS-
T ss_pred CceEEEEcC-------CCCEEEEEeCCHHHHHHHHHHhcccccccC----CCceEEEEcccccc
Confidence 355588886 46899999999999999999987 66655 77799999965554
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=44.69 E-value=77 Score=32.33 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=57.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
-...-+|-+-|||-..+.++|..++..+ .|.=+-..+|- -.|-|||.|.+...+..+.+++.|.+... .-
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf-~g~keir~i~~------~~~iAfve~~~d~~a~~a~~~lq~~~it~---~~ 212 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQF-PGFKEIRLIPP------RSGIAFVEFLSDRQASAAQQALQGFKITK---KN 212 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhC-cccceeEeccC------CCceeEEecchhhhhHHHhhhhccceecc---Cc
Confidence 3445688899999999998888887764 23222222221 13789999999999999999999998874 55
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
+++|+||+
T Consensus 213 ~m~i~~a~ 220 (221)
T KOG4206|consen 213 TMQITFAK 220 (221)
T ss_pred eEEecccC
Confidence 67778775
No 109
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=39.45 E-value=76 Score=34.51 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=52.7
Q ss_pred ccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEE-----EeccChhhHHHHHHHhcCCccccCCCccEEEEEeecc
Q 009947 373 KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAF-----INMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARI 447 (522)
Q Consensus 373 KyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAF-----VNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsYAri 447 (522)
+++++.|+.+|+-...-.|+= +..|| |-.-|-| ||=++-..-.+....|-.+... -.---|.-+++...
T Consensus 243 RIs~etlk~vl~g~~~~~f~k-CiIID----CRFeYEY~GGHIinaVNi~s~~~l~~~F~hkplT-hp~aLifHCEfSsh 316 (427)
T COG5105 243 RISVETLKQVLEGMYNIDFLK-CIIID----CRFEYEYRGGHIINAVNISSTKKLGLLFRHKPLT-HPRALIFHCEFSSH 316 (427)
T ss_pred hcCHHHHHHHHhchhhhhhhc-eeEEe----ecceeeecCceeeeeeecchHHHHHHHHHhcccc-CceeEEEEeecccc
Confidence 578999999998543222221 34566 3333333 3333333333333445444322 01134445566667
Q ss_pred cChHHHHHhhccCCccCCCCCccceEEecC
Q 009947 448 QGQAALVTHFQNSSLMNEDKRCRPIVFHSE 477 (522)
Q Consensus 448 QGk~ALi~hFrNSsVm~e~~~~RPilF~s~ 477 (522)
.+. .|..||||---|.....| |+||+++
T Consensus 317 RaP-~LA~HlRN~DR~~N~dhY-P~L~yPe 344 (427)
T COG5105 317 RAP-RLAQHLRNMDRMKNPDHY-PLLTYPE 344 (427)
T ss_pred cch-hHHHHHhhhhhhcCcccC-cccccce
Confidence 665 489999998866554444 6666655
No 110
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=39.22 E-value=51 Score=37.85 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=44.8
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeE---EEEeccChhhHHHHHH-------HhcC
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGY---AFINMVSPSHIISFYE-------AFNG 428 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGY---AFVNF~spe~a~~F~~-------~FnG 428 (522)
.-.|+-|+||-||+.--.++++.+++-...-+| ..|-.+| =||.|.+..||..+|+ .|.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~----------iscefa~N~nWyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKV----------ISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCc----------eeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 457999999999999999999999874322333 1122222 3899999999998875 4666
Q ss_pred Ccc
Q 009947 429 KKW 431 (522)
Q Consensus 429 kkW 431 (522)
|..
T Consensus 242 KpI 244 (684)
T KOG2591|consen 242 KPI 244 (684)
T ss_pred cch
Confidence 644
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=36.58 E-value=78 Score=35.84 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=50.5
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeeccc--CCCCcceeEEEEeccChhhHHHHHHH
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPID--FKNKCNVGYAFINMVSPSHIISFYEA 425 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiD--FknkcNvGYAFVNF~spe~a~~F~~~ 425 (522)
..|.|-||-|--+|..+|-++|-.|+|..+ |. -+|+=|| .+=|-.+|=+=|-|.+.+.-++++.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~ly-Gg--V~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLF-GG--VLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhc-Cc--eEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 469999999999999999999999999642 33 3455554 55667789899999998776666643
No 112
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=36.46 E-value=1.5e+02 Score=34.56 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=57.4
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
.|.|--|.-...-.+|+++|.++ |+.==..+..+-.+-.-..|+||.|.+.++|-+-++.++-..+- .+++.|+
T Consensus 407 NlWVSGLSstTRAtDLKnlFSKy--GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH----GrmISVE 480 (940)
T KOG4661|consen 407 NLWVSGLSSTTRATDLKNLFSKY--GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH----GRMISVE 480 (940)
T ss_pred ceeeeccccchhhhHHHHHHHHh--cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc----ceeeeee
Confidence 35666666666677999999986 44433455566666667889999999999999999888765553 6777787
Q ss_pred eec
Q 009947 444 YAR 446 (522)
Q Consensus 444 YAr 446 (522)
-|+
T Consensus 481 kaK 483 (940)
T KOG4661|consen 481 KAK 483 (940)
T ss_pred ecc
Confidence 775
No 113
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=34.53 E-value=99 Score=28.13 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=36.7
Q ss_pred eEEEecCCCcc---------CHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccC----hhhHHHHHHHhc
Q 009947 364 TLMIKNIPNKY---------TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVS----PSHIISFYEAFN 427 (522)
Q Consensus 364 TLMIRNIPNKy---------Tq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~s----pe~a~~F~~~Fn 427 (522)
+++|-|||... +-+.|++.|.++...+..=+|-+- .+.|+|-|-|.. -.+|.+|.+.|.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~-----gh~g~aiv~F~~~w~Gf~~A~~l~~~F~ 81 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQ-----GHTGFAIVEFNKDWSGFKNAMRLEKHFE 81 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETT-----EEEEEEEEE--SSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCC-----CCcEEEEEEECCChHHHHHHHHHHHHHH
Confidence 67888997765 456788888876555555444332 578999999998 468999999997
No 114
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=33.24 E-value=60 Score=31.63 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=50.8
Q ss_pred CccceEEEecCCCcc-CHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc
Q 009947 360 DTRTTLMIKNIPNKY-TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 430 (522)
Q Consensus 360 D~RTTLMIRNIPNKy-Tq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk 430 (522)
..-.||.+|=+...+ ..++|+.++.+-. ++=||+..|-|-.--|-|-|.|...|..++.+|.-..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls------~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLS------VFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHH------hcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCCC
Confidence 456689998776666 5667777776541 2237788899999999999999999999999998643
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=31.22 E-value=1.8e+02 Score=32.31 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=60.7
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCC--CcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCC--C
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHR--GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN--S 436 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~--G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fn--S 436 (522)
.-.+|-.=|.|..+|++.|+++.++... -+++-| +-|+.. -.=+-+.|.+.++|+...-+.|....+.-+ -
T Consensus 405 Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF----p~kser-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~ 479 (494)
T KOG1456|consen 405 PSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF----PLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSF 479 (494)
T ss_pred CcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee----cccccc-cccceeeeehHHHHHHHHHHhccccccCCCCCC
Confidence 3457889999999999999999998632 233322 222222 233568999999999999999998887543 2
Q ss_pred ccEEEEEeeccc
Q 009947 437 EKVASLAYARIQ 448 (522)
Q Consensus 437 ~KVc~VsYAriQ 448 (522)
-.++++||+..|
T Consensus 480 PfilKlcfsts~ 491 (494)
T KOG1456|consen 480 PFILKLCFSTSK 491 (494)
T ss_pred Ceeeeeeecccc
Confidence 478888888765
No 116
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=30.99 E-value=1.8e+02 Score=34.61 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=55.9
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
...-|-|-++|.|-+.|-+++++.|..+- -.-|-+.++..- .+...|=|-|-|.+++.|.++....++++.-
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~-~~p~sI~~r~nd-~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~ 935 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYE-PDPNSIRIRRND-DGVPTGECMVAFESQEEARRASMDLDGQKIR 935 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccc-cCCCceeEeecC-CCCcccceeEeecCHHHHHhhhhccccCccc
Confidence 45667999999999999999988887542 222344444432 3456799999999999999999999999886
No 117
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=29.26 E-value=81 Score=34.46 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=61.7
Q ss_pred cceEEEecCCCccCHHHHHHHHhh-cCCCcCceE-eecccCCCCc-c--eeEE--EEeccChhhHHHHHHHhcCCccccC
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDE-NHRGTYDFL-YLPIDFKNKC-N--VGYA--FINMVSPSHIISFYEAFNGKKWEKF 434 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe-~~~G~YDFl-YLPiDFknkc-N--vGYA--FVNF~spe~a~~F~~~FnGkkW~~f 434 (522)
+.-|-|--||+|+-.++...+|.. ..+|.|-=+ .+.++.++.. | -|.+ ||.|.+.++|.+.+...+|...+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D-- 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD-- 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc--
Confidence 445666679999999887777753 245777633 5666666632 2 2444 99999999999999999999988
Q ss_pred CCccEEEEEeecc
Q 009947 435 NSEKVASLAYARI 447 (522)
Q Consensus 435 nS~KVc~VsYAri 447 (522)
.+++..+|...
T Consensus 192 --Gr~lkatYGTT 202 (480)
T COG5175 192 --GRVLKATYGTT 202 (480)
T ss_pred --CceEeeecCch
Confidence 88999888754
No 118
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=24.89 E-value=3.9e+02 Score=22.58 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=47.9
Q ss_pred EEEecCCCccCHHHHHHHHhhcC--CCcC-ceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcc
Q 009947 365 LMIKNIPNKYTSKMLLAAIDENH--RGTY-DFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKW 431 (522)
Q Consensus 365 LMIRNIPNKyTq~mLl~iIDe~~--~G~Y-DFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW 431 (522)
+..|+||.-+|.++|.++-.... ..++ +--||..-.....+.-||...=.|.+.+.+-.+.- |..+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 57899999999999988766532 2344 44455555555556789999999999988887766 6655
No 119
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=20.93 E-value=3.5e+02 Score=27.71 Aligned_cols=62 Identities=11% Similarity=0.240 Sum_probs=48.4
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcccc
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 433 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~ 433 (522)
-.|||+-||..-+-++|++-+.|- | |-+|--. .-=|++-|.|+..++..-++.+++-.++..
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmRea--G--dvCfadv-----~rDg~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREA--G--DVCFADV-----QRDGVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhh--C--Ceeeeee-----ecccceeeeeeehhhHHHHHHhhccccccC
Confidence 379999999999999999999884 2 3333211 112689999999999999999988887764
No 120
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=20.45 E-value=3.4e+02 Score=29.78 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=44.6
Q ss_pred cceEEEecCCC--ccC-HHHHHHHHhh----cC--CCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 362 RTTLMIKNIPN--KYT-SKMLLAAIDE----NH--RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 362 RTTLMIRNIPN--KyT-q~mLl~iIDe----~~--~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
-.||.||||=. .+. ..+|+.-|.+ .| .|..+-|-| --+-+-|=|=|+|.+++.|..-++.++|+.+.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv----~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd 340 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV----YDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD 340 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE----eccCCCceeEEEeCChHHHHHHHHHhcCeeec
Confidence 35899999833 221 1133333321 11 477775432 12345699999999999999999999999887
No 121
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=20.37 E-value=1.5e+02 Score=32.97 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=64.9
Q ss_pred ccCHHHHHHHHhhcCCCc---Cce--EeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEEeecc
Q 009947 373 KYTSKMLLAAIDENHRGT---YDF--LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARI 447 (522)
Q Consensus 373 KyTq~mLl~iIDe~~~G~---YDF--lYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsYAri 447 (522)
.++.+..+++-++.+..+ +|. .|..+-.+|+|.+-|+ |-|.+++.+.++.+.+-...-+.+-+.|+++..++++
T Consensus 176 ~v~~~s~~e~d~~~~p~tfdnvD~~~~~~~i~P~t~~PVl~G-IRg~~p~~l~~a~~~i~~e~~e~~~if~TNqatD~hl 254 (421)
T COG1571 176 RVDEDSVLEMDKETFPFTFDNVDVQNLYPLIPPHTPNPVLYG-IRGAVPEVLLKAMSLIKRELVERSAIFETNQATDDHL 254 (421)
T ss_pred eccHHHHHHHHhccCCeeEeeeeccccccccCCCCCCCEEEE-EecCCHHHHHHHHHHHhccCcceEEEEeccchhhhhc
Confidence 456677777777665444 455 4899999999999888 5666699999999999544444456789999999999
Q ss_pred cChHHH--HHhhccCCccC
Q 009947 448 QGQAAL--VTHFQNSSLMN 464 (522)
Q Consensus 448 QGk~AL--i~hFrNSsVm~ 464 (522)
|.+..+ +..+.+-.|+.
T Consensus 255 ~~~~~l~d~~~~~~~~v~g 273 (421)
T COG1571 255 VDKGKLNDIEDYSKYRVVG 273 (421)
T ss_pred cccchhhhhhhccceEEEE
Confidence 988533 44444444443
No 122
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=20.15 E-value=1.3e+02 Score=30.31 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=55.2
Q ss_pred CccceEEEecCCCcc-CHHHHHHHHhhcCCCcCc---eEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCC
Q 009947 360 DTRTTLMIKNIPNKY-TSKMLLAAIDENHRGTYD---FLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 435 (522)
Q Consensus 360 D~RTTLMIRNIPNKy-Tq~mLl~iIDe~~~G~YD---FlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fn 435 (522)
|--|++..-+|+-.. +....+..+...++ +|| ++-|- ...++-=|||.+++.+.+..-..++..++
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFr-q~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~--- 77 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFR-QINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFN--- 77 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHh-hhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccC---
Confidence 566788888887554 33333333333322 443 11111 13466779999999999999999998877
Q ss_pred Ccc-EEEEEeecccChHHHH
Q 009947 436 SEK-VASLAYARIQGQAALV 454 (522)
Q Consensus 436 S~K-Vc~VsYAriQGk~ALi 454 (522)
.| .|...+|..+-....-
T Consensus 78 -~~~~~k~yfaQ~~~~~~~~ 96 (193)
T KOG4019|consen 78 -GKNELKLYFAQPGHPESNS 96 (193)
T ss_pred -CCceEEEEEccCCCccccc
Confidence 44 8999999887766533
Done!