Query 009947
Match_columns 522
No_of_seqs 200 out of 315
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:30:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.4 3.2E-13 1.1E-17 112.2 9.4 81 360-446 17-97 (99)
2 2lkz_A RNA-binding protein 5; 99.4 9.1E-13 3.1E-17 110.0 8.7 88 359-446 6-93 (95)
3 3mdf_A Peptidyl-prolyl CIS-tra 99.4 2.7E-12 9.4E-17 100.9 9.3 82 359-446 4-85 (85)
4 2e5h_A Zinc finger CCHC-type a 99.3 2.6E-12 9E-17 103.0 8.2 81 360-446 14-94 (94)
5 1whw_A Hypothetical protein ri 99.3 5.6E-12 1.9E-16 102.2 10.0 87 358-450 4-90 (99)
6 2div_A TRNA selenocysteine ass 99.3 5.1E-12 1.8E-16 102.4 9.7 90 359-450 6-96 (99)
7 3bs9_A Nucleolysin TIA-1 isofo 99.3 6E-12 2.1E-16 99.3 9.7 83 360-448 4-86 (87)
8 2cpz_A CUG triplet repeat RNA- 99.3 7E-12 2.4E-16 104.7 10.2 85 360-450 23-107 (115)
9 2dnz_A Probable RNA-binding pr 99.3 6.8E-12 2.3E-16 100.7 9.6 85 359-449 2-86 (95)
10 2cqb_A Peptidyl-prolyl CIS-tra 99.3 7.5E-12 2.6E-16 102.0 9.6 84 360-449 10-93 (102)
11 2cqc_A Arginine/serine-rich sp 99.3 9.1E-12 3.1E-16 99.8 9.9 82 359-446 12-93 (95)
12 1x5t_A Splicing factor 3B subu 99.3 7.2E-12 2.5E-16 100.8 8.9 85 359-449 2-87 (96)
13 1x5s_A Cold-inducible RNA-bind 99.3 1.1E-11 3.7E-16 101.0 9.9 84 360-449 10-93 (102)
14 3md1_A Nuclear and cytoplasmic 99.3 9.8E-12 3.4E-16 97.3 9.3 80 363-448 2-81 (83)
15 1p27_B RNA-binding protein 8A; 99.3 1.5E-11 5.1E-16 100.8 9.8 84 360-449 21-104 (106)
16 2dnm_A SRP46 splicing factor; 99.3 9.5E-12 3.3E-16 101.8 8.6 85 360-450 11-95 (103)
17 1u6f_A Tcubp1, RNA-binding pro 99.3 1.9E-11 6.4E-16 104.9 10.8 86 357-448 37-122 (139)
18 2dgo_A Cytotoxic granule-assoc 99.3 1.6E-11 5.5E-16 102.3 9.7 84 360-449 13-96 (115)
19 2cqp_A RNA-binding protein 12; 99.3 1.1E-11 3.6E-16 100.4 8.3 84 358-447 11-94 (98)
20 2cpf_A RNA binding motif prote 99.3 1.1E-11 3.7E-16 100.4 8.2 86 358-449 1-89 (98)
21 1uw4_A UPF3X; nonsense mediate 99.3 1E-11 3.4E-16 105.5 8.4 85 363-449 2-89 (91)
22 1p1t_A Cleavage stimulation fa 99.3 2.5E-11 8.5E-16 99.0 10.4 89 361-455 7-95 (104)
23 2x1f_A MRNA 3'-END-processing 99.3 1.7E-11 6E-16 99.3 9.4 84 362-451 2-85 (96)
24 2khc_A Testis-specific RNP-typ 99.3 8.1E-12 2.8E-16 104.5 7.4 81 360-446 38-118 (118)
25 2cq0_A Eukaryotic translation 99.3 1.1E-11 3.9E-16 101.3 8.0 85 359-449 12-96 (103)
26 2ywk_A Putative RNA-binding pr 99.3 2.2E-11 7.5E-16 97.8 9.5 81 359-446 13-93 (95)
27 1x5u_A Splicing factor 3B subu 99.3 1.8E-11 6E-16 100.3 8.9 86 359-450 12-97 (105)
28 2jrs_A RNA-binding protein 39; 99.2 2E-11 6.9E-16 102.4 9.3 91 352-448 16-106 (108)
29 2dgp_A Bruno-like 4, RNA bindi 99.2 2.6E-11 9E-16 99.4 9.7 88 359-449 10-97 (106)
30 2do4_A Squamous cell carcinoma 99.2 3.3E-11 1.1E-15 98.1 10.1 83 360-449 15-97 (100)
31 2lxi_A RNA-binding protein 10; 99.2 1.2E-11 4.2E-16 100.9 7.5 81 363-449 2-84 (91)
32 3ulh_A THO complex subunit 4; 99.2 3.3E-11 1.1E-15 98.9 10.0 82 358-446 25-106 (107)
33 2d9p_A Polyadenylate-binding p 99.2 1.8E-11 6.3E-16 100.1 8.4 83 359-449 12-94 (103)
34 3s8s_A Histone-lysine N-methyl 99.2 2.9E-11 1E-15 102.6 9.8 98 358-461 2-100 (110)
35 1oo0_B CG8781-PA, drosophila Y 99.2 2.9E-11 9.7E-16 100.0 9.5 85 360-450 24-108 (110)
36 3p5t_L Cleavage and polyadenyl 99.2 1.3E-11 4.4E-16 99.5 7.1 82 362-449 1-84 (90)
37 2cpe_A RNA-binding protein EWS 99.2 3.2E-11 1.1E-15 100.1 9.4 86 359-450 12-105 (113)
38 2ek1_A RNA-binding protein 12; 99.2 2E-11 6.8E-16 98.0 7.8 83 358-446 11-93 (95)
39 1x4h_A RNA-binding protein 28; 99.2 3.6E-11 1.2E-15 99.0 9.6 85 359-449 12-102 (111)
40 2la6_A RNA-binding protein FUS 99.2 4.8E-11 1.6E-15 97.2 10.2 82 359-446 10-99 (99)
41 2cph_A RNA binding motif prote 99.2 3.4E-11 1.1E-15 98.6 9.3 84 360-449 13-98 (107)
42 1x5o_A RNA binding motif, sing 99.2 2.9E-11 1E-15 100.5 9.0 85 360-447 23-111 (114)
43 3ex7_B RNA-binding protein 8A; 99.2 3E-11 1E-15 102.1 9.0 85 360-450 20-104 (126)
44 2fc8_A NCL protein; structure 99.2 3.6E-11 1.2E-15 97.9 8.8 81 360-449 13-93 (102)
45 4a8x_A RNA-binding protein wit 99.2 2.9E-11 9.9E-16 95.3 7.9 82 361-448 3-85 (88)
46 1h2v_Z 20 kDa nuclear CAP bind 99.2 5E-11 1.7E-15 104.6 10.1 82 360-447 37-118 (156)
47 2dgv_A HnRNP M, heterogeneous 99.2 4E-11 1.4E-15 95.7 8.6 83 359-449 5-87 (92)
48 2dgs_A DAZ-associated protein 99.2 5.2E-11 1.8E-15 96.8 9.3 84 359-449 7-90 (99)
49 2dnh_A Bruno-like 5, RNA bindi 99.2 6.3E-11 2.1E-15 97.0 9.6 86 360-449 13-98 (105)
50 2kt5_A RNA and export factor-b 99.2 8.2E-11 2.8E-15 99.6 10.6 84 358-448 31-114 (124)
51 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 4.2E-11 1.4E-15 101.9 8.8 80 360-445 61-140 (140)
52 2cqd_A RNA-binding region cont 99.2 3.8E-11 1.3E-15 100.4 7.9 83 360-449 15-97 (116)
53 3ns6_A Eukaryotic translation 99.2 3.9E-11 1.3E-15 99.0 7.9 81 361-447 5-92 (100)
54 2fy1_A RNA-binding motif prote 99.2 7.3E-11 2.5E-15 100.2 9.8 84 359-449 4-87 (116)
55 2cpx_A Hypothetical protein FL 99.2 4E-11 1.4E-15 99.6 7.8 84 360-449 23-106 (115)
56 2dh8_A DAZ-associated protein 99.2 3.2E-11 1.1E-15 98.9 7.1 84 359-449 13-96 (105)
57 2l08_A Regulator of nonsense t 99.2 1.3E-11 4.4E-16 106.4 4.6 86 362-449 9-97 (97)
58 2do0_A HnRNP M, heterogeneous 99.2 9.7E-11 3.3E-15 97.1 9.6 83 360-449 13-95 (114)
59 2cqi_A Nucleolysin TIAR; RNA r 99.2 1.1E-10 3.8E-15 95.4 9.8 83 359-449 12-94 (103)
60 2cq3_A RNA-binding protein 9; 99.2 9.9E-11 3.4E-15 95.7 9.4 82 360-449 13-94 (103)
61 3ucg_A Polyadenylate-binding p 99.2 7.8E-11 2.7E-15 93.3 8.3 80 361-447 5-84 (89)
62 2m2b_A RNA-binding protein 10; 99.2 3.9E-11 1.3E-15 103.2 6.7 83 359-448 20-108 (131)
63 2dng_A Eukaryotic translation 99.2 7E-11 2.4E-15 96.8 8.0 82 360-449 13-94 (103)
64 2kxn_B Transformer-2 protein h 99.2 5.1E-11 1.8E-15 103.5 7.3 83 360-448 44-126 (129)
65 1x4e_A RNA binding motif, sing 99.1 1.4E-11 4.8E-16 97.3 3.2 81 359-445 2-82 (85)
66 2dgw_A Probable RNA-binding pr 99.1 2.1E-10 7.2E-15 91.8 10.1 81 359-448 7-87 (91)
67 3s7r_A Heterogeneous nuclear r 99.1 1.4E-10 4.9E-15 91.8 9.0 80 359-445 8-87 (87)
68 2fc9_A NCL protein; structure 99.1 1.1E-10 3.9E-15 95.0 8.6 81 360-450 13-93 (101)
69 4f25_A Polyadenylate-binding p 99.1 1.2E-10 4.2E-15 98.3 9.1 82 360-449 3-84 (115)
70 3n9u_C Cleavage and polyadenyl 99.1 1.3E-10 4.6E-15 104.4 9.4 86 360-451 53-140 (156)
71 2dgx_A KIAA0430 protein; RRM d 99.1 1.5E-10 5.2E-15 94.4 8.8 80 360-448 7-90 (96)
72 2lea_A Serine/arginine-rich sp 99.1 6.3E-11 2.2E-15 103.4 6.8 85 360-450 45-129 (135)
73 1fxl_A Paraneoplastic encephal 99.1 1.9E-10 6.3E-15 98.2 9.6 82 362-449 2-83 (167)
74 1wi8_A EIF-4B, eukaryotic tran 99.1 1.1E-10 3.8E-15 95.8 7.8 82 360-449 13-95 (104)
75 2kn4_A Immunoglobulin G-bindin 99.1 1.8E-10 6.1E-15 100.6 9.6 85 359-449 67-151 (158)
76 2dhg_A TRNA selenocysteine ass 99.1 9.8E-11 3.3E-15 95.7 7.4 82 360-448 7-90 (104)
77 1uaw_A Mouse-musashi-1; RNP-ty 99.1 9.3E-11 3.2E-15 90.5 6.9 76 363-445 1-76 (77)
78 1x4a_A Splicing factor, argini 99.1 1.8E-10 6.2E-15 95.3 9.0 81 360-449 20-100 (109)
79 3md3_A Nuclear and cytoplasmic 99.1 2.2E-10 7.7E-15 97.6 9.8 82 359-446 84-165 (166)
80 2ki2_A SS-DNA binding protein 99.1 5E-11 1.7E-15 95.1 5.4 81 363-450 2-82 (90)
81 2mss_A Protein (musashi1); RNA 99.1 1.4E-10 4.9E-15 89.5 7.7 75 364-445 1-75 (75)
82 2cqg_A TDP-43, TAR DNA-binding 99.1 2.9E-10 1E-14 92.9 9.9 82 359-448 12-93 (103)
83 1rk8_A CG8781-PA, CG8781-PA pr 99.1 2.1E-10 7.2E-15 102.2 9.5 86 360-451 70-155 (165)
84 1x4b_A Heterogeneous nuclear r 99.1 1.5E-10 5.2E-15 96.7 8.0 83 360-449 25-107 (116)
85 2hvz_A Splicing factor, argini 99.1 1.5E-10 5.2E-15 94.3 7.7 76 363-449 1-76 (101)
86 2dis_A Unnamed protein product 99.1 1.9E-10 6.6E-15 94.6 8.4 84 360-449 6-93 (109)
87 2cq4_A RNA binding motif prote 99.1 2E-10 6.7E-15 95.7 8.1 84 360-450 23-106 (114)
88 2err_A Ataxin-2-binding protei 99.1 2.9E-10 1E-14 95.1 9.2 82 359-448 26-107 (109)
89 1b7f_A Protein (SXL-lethal pro 99.1 2.7E-10 9.2E-15 97.8 8.9 83 361-449 2-84 (168)
90 1wel_A RNA-binding protein 12; 99.1 1.4E-10 4.6E-15 98.7 6.7 91 360-457 23-113 (124)
91 2dnq_A RNA-binding protein 4B; 99.1 3.3E-10 1.1E-14 90.7 8.3 79 358-450 4-82 (90)
92 2db1_A Heterogeneous nuclear r 99.1 3.9E-10 1.3E-14 96.0 9.1 91 360-458 15-108 (118)
93 2cpy_A RNA-binding protein 12; 99.1 2.5E-10 8.5E-15 96.0 7.7 84 360-451 13-97 (114)
94 2la4_A Nuclear and cytoplasmic 99.1 2.9E-10 9.8E-15 92.6 7.8 77 359-447 24-100 (101)
95 1x4g_A Nucleolysin TIAR; struc 99.1 5.6E-10 1.9E-14 92.5 9.5 81 358-450 21-101 (109)
96 2cpj_A Non-POU domain-containi 99.1 3.8E-10 1.3E-14 91.9 8.1 78 360-449 13-90 (99)
97 2qfj_A FBP-interacting repress 99.1 4.7E-10 1.6E-14 100.3 9.4 83 360-448 123-205 (216)
98 1iqt_A AUF1, heterogeneous nuc 99.1 2.3E-10 7.9E-15 88.1 6.4 75 364-445 1-75 (75)
99 3lqv_A PRE-mRNA branch site pr 99.1 4.7E-10 1.6E-14 93.4 8.7 82 357-447 3-84 (115)
100 2cqh_A IGF-II mRNA-binding pro 99.1 4.7E-10 1.6E-14 90.1 8.4 79 358-449 4-84 (93)
101 2f3j_A RNA and export factor b 99.0 5.7E-10 2E-14 102.0 9.8 85 358-449 84-168 (177)
102 2g4b_A Splicing factor U2AF 65 99.0 5.8E-10 2E-14 96.3 9.2 81 360-446 92-172 (172)
103 2jwn_A Embryonic polyadenylate 99.0 4E-10 1.4E-14 94.9 7.9 81 361-448 35-115 (124)
104 1x4c_A Splicing factor, argini 99.0 6.2E-10 2.1E-14 92.5 8.9 79 360-447 13-92 (108)
105 2dha_A FLJ20171 protein; RRM d 99.0 6.5E-10 2.2E-14 97.1 9.2 96 360-461 21-118 (123)
106 2jvo_A Nucleolar protein 3; nu 99.0 6.4E-10 2.2E-14 93.5 8.8 80 357-450 26-105 (108)
107 3q2s_C Cleavage and polyadenyl 99.0 3.8E-10 1.3E-14 107.0 8.3 86 361-452 67-154 (229)
108 1wg1_A KIAA1579 protein, homol 99.0 5.5E-10 1.9E-14 89.5 8.0 78 358-448 1-78 (88)
109 2cpi_A CCR4-NOT transcription 99.0 2.6E-10 9E-15 95.4 6.4 84 360-449 13-102 (111)
110 1fxl_A Paraneoplastic encephal 99.0 8.7E-10 3E-14 94.0 9.6 82 360-445 86-167 (167)
111 1nu4_A U1A RNA binding domain; 99.0 3.5E-10 1.2E-14 91.1 6.7 83 360-451 6-92 (97)
112 1fjc_A Nucleolin RBD2, protein 99.0 4.3E-10 1.5E-14 90.6 7.1 81 359-450 13-93 (96)
113 2cpd_A Apobec-1 stimulating pr 99.0 8.4E-10 2.9E-14 89.8 8.8 79 360-450 13-91 (99)
114 1b7f_A Protein (SXL-lethal pro 99.0 7.8E-10 2.7E-14 94.9 9.0 82 360-445 87-168 (168)
115 2dgu_A Heterogeneous nuclear r 99.0 8.5E-10 2.9E-14 90.6 8.6 78 359-450 8-85 (103)
116 2ytc_A PRE-mRNA-splicing facto 99.0 6.9E-10 2.4E-14 87.3 7.3 75 360-446 10-85 (85)
117 2dgt_A RNA-binding protein 30; 99.0 2E-09 6.8E-14 86.5 10.1 77 359-449 7-83 (92)
118 1fj7_A Nucleolin RBD1, protein 99.0 2.6E-10 8.7E-15 92.9 4.8 82 360-449 15-96 (101)
119 2e5j_A Methenyltetrahydrofolat 99.0 1E-09 3.5E-14 89.2 8.3 79 360-449 17-95 (97)
120 2yh0_A Splicing factor U2AF 65 99.0 1.2E-09 4E-14 96.5 9.3 85 360-450 112-196 (198)
121 2qfj_A FBP-interacting repress 99.0 9.3E-10 3.2E-14 98.4 8.7 83 361-449 27-109 (216)
122 2rs2_A Musashi-1, RNA-binding 99.0 7.6E-10 2.6E-14 92.8 7.3 84 358-448 21-104 (109)
123 2hgl_A HNRPF protein, heteroge 99.0 9.2E-10 3.1E-14 97.7 8.2 84 360-451 42-128 (136)
124 1wg5_A Heterogeneous nuclear r 99.0 8.4E-10 2.9E-14 91.4 7.3 81 360-448 13-94 (104)
125 3egn_A RNA-binding protein 40; 99.0 6.4E-10 2.2E-14 96.3 6.9 85 359-449 42-131 (143)
126 1whx_A Hypothetical protein ri 99.0 1E-09 3.4E-14 92.5 7.8 75 361-447 9-83 (111)
127 2lcw_A RNA-binding protein FUS 98.5 5.5E-11 1.9E-15 99.6 0.0 84 360-449 5-96 (116)
128 2nlw_A Eukaryotic translation 99.0 1.3E-09 4.5E-14 90.4 8.2 79 360-446 13-98 (105)
129 2lmi_A GRSF-1, G-rich sequence 99.0 7.2E-10 2.5E-14 92.2 6.6 92 359-456 8-100 (107)
130 1why_A Hypothetical protein ri 99.0 2E-09 6.7E-14 87.3 8.9 80 360-449 15-94 (97)
131 2xnq_A Nuclear polyadenylated 98.9 2.9E-09 9.8E-14 87.6 9.3 77 359-449 19-96 (97)
132 3nmr_A Cugbp ELAV-like family 98.9 2.9E-09 1E-13 91.7 9.7 85 361-448 2-88 (175)
133 2j76_E EIF-4B, EIF4B, eukaryot 98.9 4.5E-10 1.5E-14 92.2 4.2 81 359-447 16-97 (100)
134 4f02_A Polyadenylate-binding p 98.9 3.2E-09 1.1E-13 97.3 10.2 84 361-450 14-97 (213)
135 1wf1_A RNA-binding protein RAL 98.9 4.3E-09 1.5E-13 87.3 9.6 74 361-448 26-100 (110)
136 1l3k_A Heterogeneous nuclear r 98.9 2.8E-09 9.7E-14 93.9 9.0 82 360-448 11-92 (196)
137 2jvr_A Nucleolar protein 3; RN 98.9 3E-09 1E-13 91.4 8.9 78 360-447 26-104 (111)
138 2xs2_A Deleted in azoospermia- 98.9 1.4E-09 4.7E-14 88.8 6.4 80 359-447 6-85 (102)
139 2dnp_A RNA-binding protein 14; 98.9 3.6E-09 1.2E-13 84.7 8.6 77 359-449 6-82 (90)
140 1sjq_A Polypyrimidine tract-bi 98.9 1.8E-09 6.1E-14 93.0 6.8 80 359-450 13-94 (105)
141 3nmr_A Cugbp ELAV-like family 98.9 5.3E-09 1.8E-13 90.0 9.6 82 360-445 93-174 (175)
142 2kvi_A Nuclear polyadenylated 98.9 3.2E-09 1.1E-13 86.3 7.6 78 359-450 7-85 (96)
143 2i2y_A Fusion protein consists 98.9 3.1E-09 1E-13 92.7 8.0 79 359-448 70-148 (150)
144 1l3k_A Heterogeneous nuclear r 98.9 3.5E-09 1.2E-13 93.3 8.3 82 361-449 103-184 (196)
145 2cjk_A Nuclear polyadenylated 98.9 3.6E-09 1.2E-13 91.0 8.1 81 360-447 85-165 (167)
146 2cq1_A PTB-like protein L; RRM 98.9 3.8E-09 1.3E-13 89.1 7.8 79 360-450 13-93 (101)
147 2a3j_A U1 small nuclear ribonu 98.9 3.9E-09 1.3E-13 92.5 8.0 82 360-450 27-112 (127)
148 1s79_A Lupus LA protein; RRM, 98.9 3.5E-09 1.2E-13 89.0 7.2 78 361-446 10-87 (103)
149 1wez_A HnRNP H', FTP-3, hetero 98.9 3.8E-09 1.3E-13 88.1 7.3 80 360-448 13-92 (102)
150 2cq2_A Hypothetical protein LO 98.9 4.6E-09 1.6E-13 91.8 8.0 80 359-446 22-104 (114)
151 1wex_A Hypothetical protein (r 98.9 4.6E-09 1.6E-13 88.9 7.7 77 361-449 14-92 (104)
152 3beg_B Splicing factor, argini 98.9 1.4E-09 4.7E-14 92.0 4.4 63 361-432 15-77 (115)
153 3md3_A Nuclear and cytoplasmic 98.9 6.3E-09 2.1E-13 88.6 8.3 78 364-448 2-79 (166)
154 2e44_A Insulin-like growth fac 98.8 9E-09 3.1E-13 82.8 8.1 78 360-447 13-91 (96)
155 2krb_A Eukaryotic translation 98.8 2.8E-09 9.4E-14 84.0 4.8 66 363-432 2-73 (81)
156 1x4f_A Matrin 3; structural ge 98.8 5.4E-09 1.8E-13 90.7 7.0 89 347-447 10-101 (112)
157 2ad9_A Polypyrimidine tract-bi 98.8 1.2E-08 4.1E-13 89.4 9.1 79 360-450 29-109 (119)
158 3pgw_S U1-70K; protein-RNA com 98.8 8.9E-09 3E-13 106.6 9.6 83 360-448 100-182 (437)
159 4f02_A Polyadenylate-binding p 98.8 1.3E-08 4.3E-13 93.4 9.0 79 362-448 103-181 (213)
160 2dnn_A RNA-binding protein 12; 98.8 1.5E-08 5E-13 86.6 8.5 78 361-447 15-92 (109)
161 2dnl_A Cytoplasmic polyadenyla 98.8 1.7E-08 5.8E-13 84.8 8.5 70 359-431 5-80 (114)
162 1x4d_A Matrin 3; structural ge 98.8 6.4E-09 2.2E-13 88.5 5.9 76 360-447 13-91 (102)
163 1fje_B Nucleolin RBD12, protei 98.8 1.1E-08 3.7E-13 89.1 7.4 77 360-447 97-173 (175)
164 1x5p_A Negative elongation fac 98.8 2.3E-08 7.8E-13 81.2 8.4 78 359-450 12-89 (97)
165 3smz_A Protein raver-1, ribonu 98.8 2.7E-08 9.2E-13 93.7 9.9 83 360-448 93-175 (284)
166 3r27_A HnRNP L, heterogeneous 98.7 2.5E-08 8.5E-13 85.3 8.7 77 360-448 19-97 (100)
167 2ghp_A U4/U6 snRNA-associated 98.7 1.8E-08 6.2E-13 95.2 8.2 82 359-447 207-290 (292)
168 2cjk_A Nuclear polyadenylated 98.7 1.4E-08 4.9E-13 87.2 6.9 78 361-446 2-79 (167)
169 3smz_A Protein raver-1, ribonu 98.7 3.3E-08 1.1E-12 93.1 9.9 82 360-448 182-264 (284)
170 3d2w_A TAR DNA-binding protein 98.7 2.8E-08 9.7E-13 80.8 7.8 77 360-449 9-85 (89)
171 1fje_B Nucleolin RBD12, protei 98.7 8.5E-09 2.9E-13 89.8 4.9 82 359-448 10-91 (175)
172 1qm9_A Polypyrimidine tract-bi 98.7 2.6E-08 8.8E-13 88.8 8.0 77 362-449 3-80 (198)
173 1wf0_A TDP-43, TAR DNA-binding 98.7 3.5E-08 1.2E-12 78.6 7.3 77 360-449 3-79 (88)
174 2adc_A Polypyrimidine tract-bi 98.7 4.1E-08 1.4E-12 90.9 8.5 78 360-448 32-110 (229)
175 3pgw_A U1-A; protein-RNA compl 98.7 6.3E-08 2.1E-12 91.1 9.8 83 360-449 7-91 (282)
176 2wbr_A GW182, gawky, LD47780P; 98.7 3.7E-08 1.3E-12 83.6 7.2 72 362-445 7-78 (89)
177 2hgm_A HNRPF protein, heteroge 98.7 2.2E-08 7.4E-13 88.2 5.7 79 360-446 40-119 (126)
178 3tyt_A Heterogeneous nuclear r 98.7 4.4E-08 1.5E-12 90.9 8.1 78 361-449 3-81 (205)
179 3sde_A Paraspeckle component 1 98.6 5.7E-08 2E-12 91.8 8.6 85 361-448 95-179 (261)
180 2hgn_A Heterogeneous nuclear r 98.6 1.3E-08 4.3E-13 90.8 3.8 80 360-448 44-123 (139)
181 3pgw_A U1-A; protein-RNA compl 98.6 9.8E-08 3.3E-12 89.8 9.6 77 360-446 205-281 (282)
182 2ghp_A U4/U6 snRNA-associated 98.6 9.1E-08 3.1E-12 90.4 9.0 85 360-451 115-200 (292)
183 2e5g_A U6 snRNA-specific termi 98.6 5.7E-08 2E-12 78.4 6.2 75 361-447 7-81 (94)
184 2hzc_A Splicing factor U2AF 65 98.6 7E-08 2.4E-12 75.9 6.2 73 360-443 4-85 (87)
185 3sde_A Paraspeckle component 1 98.6 1.4E-07 4.6E-12 89.3 9.1 75 360-446 20-94 (261)
186 1sjr_A Polypyrimidine tract-bi 98.6 1.5E-07 5.1E-12 87.2 8.9 79 362-448 46-124 (164)
187 2bz2_A Negative elongation fac 98.6 1.9E-07 6.5E-12 80.3 8.8 77 360-450 37-113 (121)
188 2pe8_A Splicing factor 45; RRM 98.5 2.6E-07 9.1E-12 78.2 9.0 81 361-447 7-93 (105)
189 1qm9_A Polypyrimidine tract-bi 98.5 1.8E-07 6.2E-12 83.3 8.3 79 360-448 118-197 (198)
190 2adc_A Polypyrimidine tract-bi 98.5 2.1E-07 7.2E-12 86.2 8.4 78 360-448 149-228 (229)
191 2yh0_A Splicing factor U2AF 65 98.5 5.7E-08 2E-12 85.6 3.7 80 361-447 3-87 (198)
192 2dit_A HIV TAT specific factor 98.4 4.7E-07 1.6E-11 75.9 8.2 77 361-447 14-101 (112)
193 3zzy_A Polypyrimidine tract-bi 98.4 6.5E-07 2.2E-11 79.9 9.3 86 355-449 21-107 (130)
194 2voo_A Lupus LA protein; RNA-b 98.4 4.7E-07 1.6E-11 83.6 7.9 78 361-446 108-185 (193)
195 3tyt_A Heterogeneous nuclear r 98.4 6.5E-07 2.2E-11 83.1 8.7 81 361-445 122-204 (205)
196 2g4b_A Splicing factor U2AF 65 98.4 1.7E-07 5.8E-12 80.9 4.2 83 361-448 3-88 (172)
197 3u1l_A PRE-mRNA-splicing facto 98.4 5.7E-07 2E-11 87.4 8.1 81 360-448 132-229 (240)
198 3v4m_A Splicing factor U2AF 65 98.4 9.1E-07 3.1E-11 74.8 8.2 82 361-448 4-97 (105)
199 2diu_A KIAA0430 protein; struc 98.3 8.6E-07 2.9E-11 76.3 7.2 76 360-449 7-85 (96)
200 3ue2_A Poly(U)-binding-splicin 98.3 1.5E-06 5.2E-11 75.4 8.0 91 350-447 9-108 (118)
201 2e5i_A Heterogeneous nuclear r 98.3 2.6E-06 8.8E-11 75.0 9.0 76 364-449 27-103 (124)
202 2j8a_A Histone-lysine N-methyl 98.2 4E-06 1.4E-10 76.2 9.3 79 362-446 2-94 (136)
203 1jmt_A Splicing factor U2AF 35 98.2 1.7E-06 5.7E-11 72.9 5.0 73 369-446 22-104 (104)
204 2d9o_A DNAJ (HSP40) homolog, s 98.1 1.1E-05 3.9E-10 68.2 8.1 76 362-450 10-92 (100)
205 3tht_A Alkylated DNA repair pr 98.0 8E-06 2.7E-10 83.2 8.3 78 360-445 16-96 (345)
206 3s6e_A RNA-binding protein 39; 97.9 3.9E-05 1.3E-09 66.3 8.2 87 364-461 9-103 (114)
207 3dxb_A Thioredoxin N-terminall 96.8 0.0019 6.6E-08 59.3 7.0 67 375-447 142-212 (222)
208 1owx_A Lupus LA protein, SS-B, 95.8 0.022 7.4E-07 50.4 7.5 60 360-427 16-77 (121)
209 1wey_A Calcipressin 1; structu 95.7 0.013 4.4E-07 51.2 5.5 78 358-446 1-82 (104)
210 2dnr_A Synaptojanin-1; RRM dom 95.6 0.032 1.1E-06 47.6 7.2 71 363-446 8-84 (91)
211 1ufw_A Synaptojanin 2; RNP dom 94.0 0.11 3.6E-06 44.8 6.4 70 362-444 15-91 (95)
212 2l9w_A U4/U6 snRNA-associated- 89.8 1.5 5.2E-05 39.1 8.8 74 360-443 19-95 (117)
213 2dhx_A Poly (ADP-ribose) polym 85.6 1.9 6.5E-05 37.7 6.8 60 357-425 3-66 (104)
214 2kn4_A Immunoglobulin G-bindin 80.0 1 3.5E-05 38.7 2.9 27 402-428 9-35 (158)
215 2i2y_A Fusion protein consists 43.1 9.1 0.00031 32.7 1.6 40 403-447 10-50 (150)
216 3v2a_A Vascular endothelial gr 35.0 8.1 0.00028 34.9 0.0 16 223-238 3-18 (134)
217 2qih_A Protein USPA1; trimeric 33.4 9.4 0.00032 35.2 0.2 17 222-238 1-17 (157)
218 2ls0_1 Zoocin A endopeptidase; 30.5 21 0.00071 32.2 1.9 15 222-236 1-15 (128)
219 3rw6_A Nuclear RNA export fact 29.4 1.1E+02 0.0037 29.7 6.9 72 360-440 22-93 (267)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.44 E-value=3.2e-13 Score=112.23 Aligned_cols=81 Identities=23% Similarity=0.348 Sum_probs=76.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
-..|||.|+|||..+|+++|++++.++ |+...+.++.|..++.+.|||||.|.++++|.++++.+||+.|. .+.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~ 90 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSI--GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----SKT 90 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 346899999999999999999999875 88999999999999999999999999999999999999999997 789
Q ss_pred EEEEeec
Q 009947 440 ASLAYAR 446 (522)
Q Consensus 440 c~VsYAr 446 (522)
+.|.||+
T Consensus 91 l~V~~Ak 97 (99)
T 4fxv_A 91 IKVSYAR 97 (99)
T ss_dssp CEEEECC
T ss_pred EEEEEee
Confidence 9999997
No 2
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.38 E-value=9.1e-13 Score=109.99 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=75.9
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
+..-.||+|||||...|+++|+++|.++..-...-+.++.|..|+.+.|||||.|.++++|.++++.+||..+...-..|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34567999999999999999999999874335557899999999999999999999999999999999998644222378
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
.+.|.||+
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999997
No 3
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.35 E-value=2.7e-12 Score=100.85 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=76.8
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.++++|.++++.+||..+. .+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 77 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GR 77 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhcc--CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 4578999999999999999999999986 78889999999999999999999999999999999999999997 88
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
.+.|.||+
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999996
No 4
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.6e-12 Score=102.99 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=76.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.++++|.++++.+||+.+. .+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 87 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKY--GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF----GRV 87 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTT--SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET----TEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 467899999999999999999999875 78889999999999999999999999999999999999999997 899
Q ss_pred EEEEeec
Q 009947 440 ASLAYAR 446 (522)
Q Consensus 440 c~VsYAr 446 (522)
+.|.||+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999996
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=5.6e-12 Score=102.20 Aligned_cols=87 Identities=21% Similarity=0.391 Sum_probs=79.5
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
+.+..+||.|+|||..+|+++|+++|..+ |+..-+.++.|..++.+.|||||.|.+.++|.++++.+||+.+. .
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g 77 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----G 77 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----C
Confidence 34567899999999999999999999976 78889999999999999999999999999999999999999987 7
Q ss_pred cEEEEEeecccCh
Q 009947 438 KVASLAYARIQGQ 450 (522)
Q Consensus 438 KVc~VsYAriQGk 450 (522)
+.+.|.||+-+..
T Consensus 78 ~~l~V~~a~~~~~ 90 (99)
T 1whw_A 78 RMLHVLPSTIKKE 90 (99)
T ss_dssp CEEEEEECCCCST
T ss_pred cEEEEEEcCCCcc
Confidence 8999999987643
No 6
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=5.1e-12 Score=102.43 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=80.6
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCc-eEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYD-FLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YD-FlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
.+..+||.|+|||..+|+++|+++|.++ |+.. -+.++.|..++.+.|||||.|.+.++|.++++.+||+.+......
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATM--GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHT--TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHh--CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4567899999999999999999999986 7887 899999999999999999999999999999999999999855445
Q ss_pred cEEEEEeecccCh
Q 009947 438 KVASLAYARIQGQ 450 (522)
Q Consensus 438 KVc~VsYAriQGk 450 (522)
+.+.|.||+.++.
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 5699999998764
No 7
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.33 E-value=6e-12 Score=99.30 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=75.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 77 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQ 77 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeE
Confidence 567899999999999999999999976 78889999999989999999999999999999999999999987 789
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
+.|.||+-+
T Consensus 78 l~v~~a~~k 86 (87)
T 3bs9_A 78 IRTNWATRK 86 (87)
T ss_dssp CEEEEEC--
T ss_pred EEEEecCCC
Confidence 999999754
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.32 E-value=7e-12 Score=104.70 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=78.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |....+.++.|..++.+.|||||.|.+.++|.++++.+||+.|. .+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 96 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----MKR 96 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGG--SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 456899999999999999999999986 78999999999999999999999999999999999999999997 889
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+-+..
T Consensus 97 l~V~~a~~~~~ 107 (115)
T 2cpz_A 97 LKVQLKRSKND 107 (115)
T ss_dssp CEEECCCCSCC
T ss_pred EEEEEcCCCCc
Confidence 99999986643
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.8e-12 Score=100.74 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=77.7
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|.++ |+...+.++.|..++.+.|||||.|.+.++|.++++.+||+.|. .+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 75 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPF--GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA----GR 75 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----SS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----Cc
Confidence 3567899999999999999999999875 78889999999999999999999999999999999999999997 78
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 76 ~l~V~~a~~~~ 86 (95)
T 2dnz_A 76 PMRVGHVTERL 86 (95)
T ss_dssp CCEEEESSCCC
T ss_pred EEEEEEccccc
Confidence 89999997643
No 10
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=7.5e-12 Score=101.97 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=78.3
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |+...+.++.|..++.+.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRT 83 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT--SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcE
Confidence 567899999999999999999999885 88999999999999999999999999999999999999999997 899
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2cqb_A 84 IRVNLAKPMR 93 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998654
No 11
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=9.1e-12 Score=99.76 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=76.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.++++|.++++.+||+.+. .+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 85 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GR 85 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT--SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 3567899999999999999999999885 78899999999999999999999999999999999999999997 89
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
.+.|.||+
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99999997
No 12
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=7.2e-12 Score=100.77 Aligned_cols=85 Identities=22% Similarity=0.249 Sum_probs=77.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceE-eecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFl-YLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
....+||.|+|||..+|+++|+++|.++ |...-+ .++.|..++.+.|||||.|.++++|.++++.++|+.+. .
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g 75 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAF--GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----N 75 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTT--SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 3567899999999999999999999986 777777 99999999999999999999999999999999999997 8
Q ss_pred cEEEEEeecccC
Q 009947 438 KVASLAYARIQG 449 (522)
Q Consensus 438 KVc~VsYAriQG 449 (522)
+.+.|.||+-+.
T Consensus 76 ~~l~v~~a~~~~ 87 (96)
T 1x5t_A 76 RPITVSYAFKKD 87 (96)
T ss_dssp EECEEEESCCCC
T ss_pred EEEEEEEecccC
Confidence 899999997654
No 13
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.1e-11 Score=101.02 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=77.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |+...+.++.|..++.+.|||||.|.++++|.++++.+||+.+. .+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKY--GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD----GRQ 83 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHH--SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT----SCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 567899999999999999999999987 78999999999999999999999999999999999999999987 788
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 84 l~v~~a~~~~ 93 (102)
T 1x5s_A 84 IRVDQAGKSS 93 (102)
T ss_dssp CEEEEEECCC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 14
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.30 E-value=9.8e-12 Score=97.29 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=74.9
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.++++|.++++.++|..+. .+.+.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEE
Confidence 689999999999999999999875 78889999999999999999999999999999999999999997 889999
Q ss_pred Eeeccc
Q 009947 443 AYARIQ 448 (522)
Q Consensus 443 sYAriQ 448 (522)
.||+-+
T Consensus 76 ~~a~~~ 81 (83)
T 3md1_A 76 NWAAKL 81 (83)
T ss_dssp EECCCC
T ss_pred EecCcC
Confidence 999854
No 15
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.5e-11 Score=100.85 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=77.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+ |...-+.++.|..++.+.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 94 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQP 94 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS----SSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC----CcE
Confidence 346899999999999999999999986 78999999999999999999999999999999999999999987 788
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-++
T Consensus 95 l~V~~a~~~~ 104 (106)
T 1p27_B 95 ISVDWCFVRG 104 (106)
T ss_dssp CEEEESEESS
T ss_pred EEEEeecCCC
Confidence 9999998765
No 16
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=9.5e-12 Score=101.76 Aligned_cols=85 Identities=19% Similarity=0.309 Sum_probs=78.2
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |....+.++.|..++.+.|||||.|.+.++|.++++.+||+.+. .+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY--GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD----GRE 84 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT----TBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 557899999999999999999999976 78899999999999999999999999999999999999999987 788
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+-+.+
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2dnm_A 85 LRVQVARYGRR 95 (103)
T ss_dssp CEEEECSSCCS
T ss_pred EEEEECCcCCC
Confidence 99999986543
No 17
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.28 E-value=1.9e-11 Score=104.95 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=79.0
Q ss_pred cCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 357 SGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 357 ~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
...+..+||.|+|||..+|+++|+++|.++ |+..-+.++.|..++.+.|||||.|.+.++|.++++.+||..+.
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---- 110 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERY--GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL---- 110 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHH--SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----
Confidence 345678899999999999999999999987 78889999999999999999999999999999999999999987
Q ss_pred ccEEEEEeeccc
Q 009947 437 EKVASLAYARIQ 448 (522)
Q Consensus 437 ~KVc~VsYAriQ 448 (522)
.+.+.|.||+-.
T Consensus 111 g~~l~v~~a~~~ 122 (139)
T 1u6f_A 111 NKRLKVALAASG 122 (139)
T ss_dssp SCEEEEEESSCC
T ss_pred CeEEEEEECCCC
Confidence 789999999864
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.27 E-value=1.6e-11 Score=102.26 Aligned_cols=84 Identities=12% Similarity=0.161 Sum_probs=77.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQ 86 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 467899999999999999999999976 78889999999999999999999999999999999999999987 789
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 87 l~V~~a~~~~ 96 (115)
T 2dgo_A 87 IRTNWATRKP 96 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999998654
No 19
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=1.1e-11 Score=100.38 Aligned_cols=84 Identities=12% Similarity=0.043 Sum_probs=75.9
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
+.+..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++.+||+.|. .
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g 84 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----S 84 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTS--CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHc--CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC----C
Confidence 45667999999999999999999999875 67777778889889999999999999999999999999999998 7
Q ss_pred cEEEEEeecc
Q 009947 438 KVASLAYARI 447 (522)
Q Consensus 438 KVc~VsYAri 447 (522)
+.+.|.||+-
T Consensus 85 ~~l~V~~a~~ 94 (98)
T 2cqp_A 85 RKVKLVLGSG 94 (98)
T ss_dssp EECEEEESSC
T ss_pred eEEEEEEcCC
Confidence 8999999874
No 20
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=1.1e-11 Score=100.37 Aligned_cols=86 Identities=14% Similarity=0.215 Sum_probs=77.6
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCC---CCcceeEEEEeccChhhHHHHHHHhcCCccccC
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFK---NKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 434 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFk---nkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~f 434 (522)
|....+||.|+|||..+|+++|+++|..+ |....+.++.|.. ++.+.|||||.|.+.++|.++++.++|+.+.
T Consensus 1 Gs~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 76 (98)
T 2cpf_A 1 GSSGSSGLFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD-- 76 (98)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC--
Confidence 44678999999999999999999999875 7888999999887 6689999999999999999999999999997
Q ss_pred CCccEEEEEeecccC
Q 009947 435 NSEKVASLAYARIQG 449 (522)
Q Consensus 435 nS~KVc~VsYAriQG 449 (522)
.+.+.|.||+-..
T Consensus 77 --g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 77 --GHKLEVRISERAT 89 (98)
T ss_dssp --TEECEEECSSCSS
T ss_pred --CeEEEEEEccCCC
Confidence 7899999997653
No 21
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=99.26 E-value=1e-11 Score=105.53 Aligned_cols=85 Identities=21% Similarity=0.333 Sum_probs=75.1
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceE-eecccCCCCcc-eeEEEEeccChhhHHHHHHHhcCCccccC-CCccE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEKF-NSEKV 439 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFl-YLPiDFknkcN-vGYAFVNF~spe~a~~F~~~FnGkkW~~f-nS~KV 439 (522)
|+|+||+||+.+|+++++++|+.. .++|++ |.+-+...+.+ .++|||||++.+++..|.+.|+|+.|.+. +.+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 799999999999999999999975 478876 56888776644 69999999999999999999999999976 56788
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|+||..|-
T Consensus 80 a~VE~AP~qk 89 (91)
T 1uw4_A 80 AIVEFAPFQK 89 (91)
T ss_dssp CEEEECSSCC
T ss_pred eEEEEcCCCc
Confidence 9999999985
No 22
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.5e-11 Score=98.95 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=80.8
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++.++|+.|. .+.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 80 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----GRAL 80 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS----SSCB
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc--CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CcEE
Confidence 46899999999999999999999975 78999999999999999999999999999999999999999997 7889
Q ss_pred EEEeecccChHHHHH
Q 009947 441 SLAYARIQGQAALVT 455 (522)
Q Consensus 441 ~VsYAriQGk~ALi~ 455 (522)
.|.||+-+.......
T Consensus 81 ~v~~a~~~~~~~~~~ 95 (104)
T 1p1t_A 81 RVDNAASEKNKEELK 95 (104)
T ss_dssp EEEETTCTTHHHHHH
T ss_pred EEEeCCCccchhhhc
Confidence 999999877754443
No 23
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.26 E-value=1.7e-11 Score=99.26 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=77.9
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
-+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++.++|+.+. .+.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV--GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----SRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEE
Confidence 3799999999999999999999986 78889999999999999999999999999999999999999997 79999
Q ss_pred EEeecccChH
Q 009947 442 LAYARIQGQA 451 (522)
Q Consensus 442 VsYAriQGk~ 451 (522)
|.||+-+...
T Consensus 76 V~~a~~~~~~ 85 (96)
T 2x1f_A 76 CGYSSNSDIS 85 (96)
T ss_dssp EEECSCSSGG
T ss_pred EEEcCCCCCC
Confidence 9999877654
No 24
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.26 E-value=8.1e-12 Score=104.47 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=74.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |+...+.++.|..++.+.|||||.|.+.++|.++++.+||+.+. .+.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 111 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPF--GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG----TKR 111 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTS--CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 456899999999999999999999875 78889999999999999999999999999999999999999997 789
Q ss_pred EEEEeec
Q 009947 440 ASLAYAR 446 (522)
Q Consensus 440 c~VsYAr 446 (522)
+.|.|||
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999986
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.1e-11 Score=101.30 Aligned_cols=85 Identities=16% Similarity=0.272 Sum_probs=78.2
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|.++ |....+.++.|..++.+.|||||.|.+.++|.++++.++|+.+. .+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 85 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HL 85 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----Cc
Confidence 4567899999999999999999999875 78889999999999999999999999999999999999999997 88
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998654
No 26
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.25 E-value=2.2e-11 Score=97.77 Aligned_cols=81 Identities=12% Similarity=0.205 Sum_probs=74.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|..+ |+...+.++.|.. +.+.|||||.|.++++|.++++.++|+.+. .+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA--GPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLY----GR 85 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEEC----CC
Confidence 3567899999999999999999999986 7888999999975 788999999999999999999999999987 78
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
.+.|.||+
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99999986
No 27
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.8e-11 Score=100.25 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=78.7
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++.++|+.+. .+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQA--GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY----GK 85 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC----Ce
Confidence 3567899999999999999999999986 78889999999999999999999999999999999999999987 78
Q ss_pred EEEEEeecccCh
Q 009947 439 VASLAYARIQGQ 450 (522)
Q Consensus 439 Vc~VsYAriQGk 450 (522)
.+.|.||+-+.+
T Consensus 86 ~l~v~~a~~~~~ 97 (105)
T 1x5u_A 86 PIRVNKASAHNK 97 (105)
T ss_dssp BCEEEETTTTSC
T ss_pred EEEEEECCCCCc
Confidence 899999986543
No 28
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.25 E-value=2e-11 Score=102.44 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=81.5
Q ss_pred chhhccCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcc
Q 009947 352 LDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKW 431 (522)
Q Consensus 352 l~rI~~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW 431 (522)
...+..+....+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++.++|..+
T Consensus 16 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i 93 (108)
T 2jrs_A 16 ANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 93 (108)
T ss_dssp CCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTT--SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34445566778999999999999999999999875 7888999999999999999999999999999999999999998
Q ss_pred ccCCCccEEEEEeeccc
Q 009947 432 EKFNSEKVASLAYARIQ 448 (522)
Q Consensus 432 ~~fnS~KVc~VsYAriQ 448 (522)
. .+.+.|.||+-+
T Consensus 94 ~----g~~l~V~~a~~k 106 (108)
T 2jrs_A 94 A----GRPMKVGHVTER 106 (108)
T ss_dssp S----SSCCEEECSCSS
T ss_pred C----CEEEEEEEcccC
Confidence 7 788999999754
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.25 E-value=2.6e-11 Score=99.37 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=77.7
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|.++ |+...+.++.|..++.+.|||||.|.+.++|.++++.++|+.+-.. ..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~-~g~ 86 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF--GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG-MNR 86 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH--SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT-CSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC-CCc
Confidence 3557899999999999999999999987 7899999999999999999999999999999999999999886211 267
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 87 ~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 PIQVKPADSES 97 (106)
T ss_dssp CCEEEECCCCS
T ss_pred eEEEEECCccc
Confidence 89999998654
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.3e-11 Score=98.07 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=75.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+ |....+.++.|. ++.+.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 87 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENI 87 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 456899999999999999999999875 788889999998 8889999999999999999999999999987 789
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999998653
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=100.88 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=72.2
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCC-cCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhc-CCccccCCCccEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRG-TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFN-GKKWEKFNSEKVA 440 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G-~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~Fn-GkkW~~fnS~KVc 440 (522)
+||+|+|||..+|+++|+++|.++ | ...-+.|+.|..++.+.|||||.|.++++|.++++..+ +..+. .+.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~--G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i 75 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSH--GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKV 75 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHH--TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh--CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEE
Confidence 589999999999999999999987 5 67889999999999999999999999999999998864 55566 7899
Q ss_pred EEEeecccC
Q 009947 441 SLAYARIQG 449 (522)
Q Consensus 441 ~VsYAriQG 449 (522)
.|.||+-+-
T Consensus 76 ~V~~a~~~~ 84 (91)
T 2lxi_A 76 SMHYSDPKP 84 (91)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 999997653
No 32
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.24 E-value=3.3e-11 Score=98.94 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=75.8
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
..+..+||.|+|||..+|+++|+++|..+ |....+.++.|. ++.+.|||||.|.+.++|.++++.++|+.+. .
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g 97 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD----G 97 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC----C
Confidence 34678999999999999999999999975 788899999998 8889999999999999999999999999997 7
Q ss_pred cEEEEEeec
Q 009947 438 KVASLAYAR 446 (522)
Q Consensus 438 KVc~VsYAr 446 (522)
+.+.|.||.
T Consensus 98 ~~l~V~~a~ 106 (107)
T 3ulh_A 98 RPMNIQLVT 106 (107)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEeC
Confidence 999999985
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=100.06 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=75.6
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|..+ |+...+.++.| ++.+.|||||.|.+.++|.++++.++|+.+. .+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 83 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA----TK 83 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTT--SCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC----Cc
Confidence 3567899999999999999999999875 78888999998 8889999999999999999999999999986 78
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2d9p_A 84 PLYVALAQRKE 94 (103)
T ss_dssp BCEEEECSSCC
T ss_pred EEEEEEecccc
Confidence 99999998654
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.24 E-value=2.9e-11 Score=102.57 Aligned_cols=98 Identities=9% Similarity=0.051 Sum_probs=84.1
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
|....+||.|+|||..+|+++|++++.++ |+..-+.++.|..|+.+.|||||.|.+.++|.++++.+||+.+. .
T Consensus 2 g~~p~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~----g 75 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDNVRETFLKDMCRKY--GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM----G 75 (110)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----T
T ss_pred CCCCCcEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----C
Confidence 34567899999999999999999999875 89999999999999999999999999999999999999999997 8
Q ss_pred cEEEEEeecccCh-HHHHHhhccCC
Q 009947 438 KVASLAYARIQGQ-AALVTHFQNSS 461 (522)
Q Consensus 438 KVc~VsYAriQGk-~ALi~hFrNSs 461 (522)
+.+.|.+|+-..+ ..+.+.+.+..
T Consensus 76 r~i~V~~a~~~~~~~~~~~~~~~g~ 100 (110)
T 3s8s_A 76 NIIHAQLDIKGQQRMKYYELIVNGS 100 (110)
T ss_dssp EECEEEECSTTHHHHHHHHHHHTSS
T ss_pred eEEEEEECCCCcHHHHHHHHhhcCC
Confidence 9999999975333 33455544443
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.24 E-value=2.9e-11 Score=100.01 Aligned_cols=85 Identities=15% Similarity=0.257 Sum_probs=78.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+ |...-+.++.|..++.+.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 97 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQT 97 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 456899999999999999999999986 78889999999999999999999999999999999999999997 789
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+.++.
T Consensus 98 l~V~~a~~~~~ 108 (110)
T 1oo0_B 98 IQVDWCFVKGP 108 (110)
T ss_dssp CEEEESEESSC
T ss_pred EEEEEcccCCC
Confidence 99999987653
No 36
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.23 E-value=1.3e-11 Score=99.45 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=70.2
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCC--cCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRG--TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G--~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
|.||.|+|||..+|+++|++++..+ | +..-+.++.|..++.+.|||||.|.+.++|.++++.+||+.+. .+.
T Consensus 1 r~~l~V~nL~~~~t~~~l~~~F~~~--G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~ 74 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQN 74 (90)
T ss_dssp ---CEEESCCTTCCHHHHHHHHHTT--TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHh--CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEE
Confidence 6799999999999999999999876 6 8889999999999999999999999999999999999999997 788
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.+|.-+-
T Consensus 75 i~V~~~~~~~ 84 (90)
T 3p5t_L 75 PVVTPSNKLE 84 (90)
T ss_dssp CEECCC----
T ss_pred EEEEECCCCc
Confidence 9999987643
No 37
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=3.2e-11 Score=100.11 Aligned_cols=86 Identities=15% Similarity=0.238 Sum_probs=77.3
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCc--------eEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYD--------FLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 430 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YD--------FlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk 430 (522)
.+..+||.|+|||..+|+++|+++|..+ |... .+.++.|..++.+.|||||.|.+.++|.++++.+||+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC--GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT--SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3567899999999999999999999986 5666 58999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEEeecccCh
Q 009947 431 WEKFNSEKVASLAYARIQGQ 450 (522)
Q Consensus 431 W~~fnS~KVc~VsYAriQGk 450 (522)
+. .+.+.|.||+-+..
T Consensus 90 ~~----g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQ----GSKLKVSLARKKPP 105 (113)
T ss_dssp ET----TEECEEECSSCCCC
T ss_pred cC----CCEEEEEECCCCCC
Confidence 97 78999999986543
No 38
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.23 E-value=2e-11 Score=98.03 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=72.9
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
+....+||.|+|||..+|+++|+++|.++ |...-+.++.|..++.+.|||||.|.++++|.++++.+||+.+. .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g 84 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----S 84 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTS--CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----C
Confidence 34557899999999999999999999875 67777888899889999999999999999999999999999997 7
Q ss_pred cEEEEEeec
Q 009947 438 KVASLAYAR 446 (522)
Q Consensus 438 KVc~VsYAr 446 (522)
+.+.|.+|.
T Consensus 85 r~l~v~~a~ 93 (95)
T 2ek1_A 85 RKVKLSGPS 93 (95)
T ss_dssp EECEEECCC
T ss_pred cEEEEEecc
Confidence 889999875
No 39
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=3.6e-11 Score=99.04 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=78.0
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhc------CCccc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFN------GKKWE 432 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~Fn------GkkW~ 432 (522)
.+..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++.++ |..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQF--GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3567899999999999999999999875 788999999999999999999999999999999999999 99887
Q ss_pred cCCCccEEEEEeecccC
Q 009947 433 KFNSEKVASLAYARIQG 449 (522)
Q Consensus 433 ~fnS~KVc~VsYAriQG 449 (522)
.+.+.|.||+-+.
T Consensus 90 ----g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 ----GRQLKVDLAVTRD 102 (111)
T ss_dssp ----SCEEEEECCCCCC
T ss_pred ----CEEEEEEECCCCc
Confidence 7899999998654
No 40
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.23 E-value=4.8e-11 Score=97.16 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=74.9
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCce--------EeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF--------LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 430 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDF--------lYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk 430 (522)
....+||.|+|||..+|+++|+++|..+ |.... +.++.|..++.+.|||||.|.+.++|.++++.+||+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTT--SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567899999999999999999999876 67766 9999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEEeec
Q 009947 431 WEKFNSEKVASLAYAR 446 (522)
Q Consensus 431 W~~fnS~KVc~VsYAr 446 (522)
+. .+.+.|.||+
T Consensus 88 ~~----g~~l~V~~A~ 99 (99)
T 2la6_A 88 FS----GNPIKVSFAT 99 (99)
T ss_dssp SS----SSBCEEEECC
T ss_pred eC----CcEEEEEecC
Confidence 87 7889999985
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=3.4e-11 Score=98.63 Aligned_cols=84 Identities=14% Similarity=0.307 Sum_probs=76.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeeccc-CCCCcceeEEEEeccChhhHHHHHHHh-cCCccccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPID-FKNKCNVGYAFINMVSPSHIISFYEAF-NGKKWEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiD-FknkcNvGYAFVNF~spe~a~~F~~~F-nGkkW~~fnS~ 437 (522)
...+||.|+|||..+|+++|+++|..+ |....+.++.| ..++.+.|||||.|.+.++|.++++.+ ||+.+. .
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~----g 86 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY----G 86 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS----S
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHcc--CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC----C
Confidence 457899999999999999999999985 78889999999 788899999999999999999999999 999987 7
Q ss_pred cEEEEEeecccC
Q 009947 438 KVASLAYARIQG 449 (522)
Q Consensus 438 KVc~VsYAriQG 449 (522)
+.+.|.||+-+.
T Consensus 87 ~~l~v~~a~~~~ 98 (107)
T 2cph_A 87 RRLVLEWADSEV 98 (107)
T ss_dssp CBCEEEECCCCC
T ss_pred CEEEEEeCCCCC
Confidence 889999998653
No 42
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.9e-11 Score=100.51 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=76.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCC----
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN---- 435 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fn---- 435 (522)
+..+||.|+|||..+|+++|+++|..+ |+...+.++.|. ++.+.|||||.|.+.++|.++++.+||+.+....
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 456899999999999999999999875 788899999998 8899999999999999999999999999996543
Q ss_pred CccEEEEEeecc
Q 009947 436 SEKVASLAYARI 447 (522)
Q Consensus 436 S~KVc~VsYAri 447 (522)
..+.+.|.||+-
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 578899999974
No 43
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.22 E-value=3e-11 Score=102.10 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=77.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+ |...-+.++.|..++.+.|||||.|.++++|.++++.+||+.+. .+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 93 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQP 93 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS----SSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 346899999999999999999999875 78889999999999999999999999999999999999999997 788
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+.++.
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999986553
No 44
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=3.6e-11 Score=97.90 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=72.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.. |--+.++.|..++.+.|||||.|.++++|.++++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-----~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDG-----SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID----GNK 83 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTT-----CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcC-----CeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 56789999999999999999988873 346788889889999999999999999999999999999997 789
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998654
No 45
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.21 E-value=2.9e-11 Score=95.31 Aligned_cols=82 Identities=12% Similarity=0.279 Sum_probs=74.9
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCc-ceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKC-NVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkc-NvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..|||.|+|||..+|+++|++++..+ |....+.++.|..++. +.|||||.|.++++|.++++.+||..+. .+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY--GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeE
Confidence 35799999999999999999999875 7888899999988766 8999999999999999999999999998 889
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
+.|.||+.+
T Consensus 77 l~v~~a~~~ 85 (88)
T 4a8x_A 77 ITATAVLAP 85 (88)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 999999754
No 46
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.21 E-value=5e-11 Score=104.64 Aligned_cols=82 Identities=15% Similarity=0.275 Sum_probs=77.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |++..+.++.|..++.+.|||||.|.++++|.++++.++|+.+. .+.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 110 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS--GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD----DRI 110 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 567899999999999999999999886 78889999999999999999999999999999999999999997 899
Q ss_pred EEEEeecc
Q 009947 440 ASLAYARI 447 (522)
Q Consensus 440 c~VsYAri 447 (522)
+.|.||+-
T Consensus 111 l~V~~a~~ 118 (156)
T 1h2v_Z 111 IRTDWDAG 118 (156)
T ss_dssp CEEEEESC
T ss_pred EEEEECCC
Confidence 99999975
No 47
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.21 E-value=4e-11 Score=95.74 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=73.9
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|.++ |+...+.++.| ++.+.|||||.|.+.++|.++++.++|+.+. .+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~ 76 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLS----GR 76 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTT--SCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT----TB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 4667899999999999999999999985 77777777764 7788999999999999999999999999987 78
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 77 ~l~v~~a~~~~ 87 (92)
T 2dgv_A 77 EIDVRIDRNAS 87 (92)
T ss_dssp CCCCEECSCCS
T ss_pred EEEEEEcCCCC
Confidence 89999998654
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=5.2e-11 Score=96.75 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=76.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|.++ |+..-+.++.|..++.+.|||||.|.+.++|.++++ ++|+.+. .+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~ 79 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKF--GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM----GK 79 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSS--SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC----Ce
Confidence 3567899999999999999999999875 788899999999999999999999999999999998 9999987 78
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 80 ~l~V~~a~~~~ 90 (99)
T 2dgs_A 80 KVEVKRAEPRD 90 (99)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEECCCCc
Confidence 89999998653
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.20 E-value=6.3e-11 Score=96.95 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=75.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |...-+.++.|. ++.+.|||||.|.+.++|.++++.++|+.+... ..+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg-~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF--GVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG-ASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT-CSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC-CCcc
Confidence 457899999999999999999999875 788889999887 788899999999999999999999999998721 2278
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 89 l~V~~a~~~~ 98 (105)
T 2dnh_A 89 LVVKFADTDK 98 (105)
T ss_dssp CEEEESCSSC
T ss_pred EEEEECccCc
Confidence 9999998653
No 50
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.20 E-value=8.2e-11 Score=99.62 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=77.1
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
+.+..+||.|+|||..+|+++|+++|.++ |+...+.++.|. ++.+.|||||.|.+.++|.++++.++|+.+. .
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g 103 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD----G 103 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTT--SCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 34678999999999999999999999985 789999999998 8889999999999999999999999999987 7
Q ss_pred cEEEEEeeccc
Q 009947 438 KVASLAYARIQ 448 (522)
Q Consensus 438 KVc~VsYAriQ 448 (522)
+.+.|.||...
T Consensus 104 ~~l~V~~a~~~ 114 (124)
T 2kt5_A 104 RPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEEECCT
T ss_pred cEEEEEEeCCC
Confidence 89999999754
No 51
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.20 E-value=4.2e-11 Score=101.87 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=74.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+ |+...+.++.|..++.+.|||||.|.++++|.++++.++|+.+. .+.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 134 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRT 134 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET----TEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 357899999999999999999999986 78999999999999999999999999999999999999999987 889
Q ss_pred EEEEee
Q 009947 440 ASLAYA 445 (522)
Q Consensus 440 c~VsYA 445 (522)
+.|.||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999987
No 52
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.8e-11 Score=100.38 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=75.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+ |+...+.++.|..++.+.|||||.|.+.++|.++++.+++ .+. .+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~----g~~ 87 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID----GRK 87 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC----CEE
Confidence 457899999999999999999999875 7899999999999999999999999999999999999998 676 788
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+.+.
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 9999997543
No 53
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.19 E-value=3.9e-11 Score=98.99 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=75.4
Q ss_pred ccceEEEecCCC------ccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccC
Q 009947 361 TRTTLMIKNIPN------KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 434 (522)
Q Consensus 361 ~RTTLMIRNIPN------KyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~f 434 (522)
..+||.|.|||. ..|+++|+++|..+ |...-+.++.|..|+.+.|||||.|.++++|.++++.+||+.+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~-- 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD-- 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS--
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC--
Confidence 468999999999 99999999999975 78999999999999999999999999999999999999999997
Q ss_pred CCc-cEEEEEeecc
Q 009947 435 NSE-KVASLAYARI 447 (522)
Q Consensus 435 nS~-KVc~VsYAri 447 (522)
. +.+.|.||+-
T Consensus 81 --g~r~l~V~~a~~ 92 (100)
T 3ns6_A 81 --LKHRLFLYTMKD 92 (100)
T ss_dssp --SSCBCEEEESHH
T ss_pred --CCeEEEEEECch
Confidence 5 8899999964
No 54
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.19 E-value=7.3e-11 Score=100.20 Aligned_cols=84 Identities=24% Similarity=0.322 Sum_probs=76.8
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|.++ |...-+.++.|. ++.+.|||||.|.+.++|.++++.+||..+. .+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~ 76 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKH--GPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLH----GK 76 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTS--SCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 4667899999999999999999999986 788899999998 8889999999999999999999999999997 78
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 77 ~l~V~~a~~~~ 87 (116)
T 2fy1_A 77 AIKVEQAKKPS 87 (116)
T ss_dssp BCEEEECCCSS
T ss_pred EEEEEECCCCC
Confidence 89999998654
No 55
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=4e-11 Score=99.60 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=74.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |...-+.+.++..++.+.|||||.|.+.++|.++++.++|..+. .+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF--QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY----GKI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH--HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS----SCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcE
Confidence 456899999999999999999999986 67766677777778899999999999999999999999999986 888
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 9999998654
No 56
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=3.2e-11 Score=98.91 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=77.0
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|..+ |+...+.++.|..++.+.|||||.|.++++|.++++. +|+.+. .+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~ 85 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY--GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD----GR 85 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC----CE
Confidence 4567899999999999999999999885 7899999999999999999999999999999999999 999988 78
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 99999997543
No 57
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=106.39 Aligned_cols=86 Identities=21% Similarity=0.347 Sum_probs=74.2
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceE-eecccCCCCcc-eeEEEEeccChhhHHHHHHHhcCCccccC-CCcc
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEKF-NSEK 438 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFl-YLPiDFknkcN-vGYAFVNF~spe~a~~F~~~FnGkkW~~f-nS~K 438 (522)
--+|+||+||+.+|+++|++.|+.... .||+ |.|-|...+.+ ..+|||||++++++..|.+.|+|+.|.+. +.+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 347999999999999999999997543 5655 67888777665 59999999999999999999999999976 5678
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|+||..|.
T Consensus 87 ~a~VE~APyqK 97 (97)
T 2l08_A 87 PAVVEFAPFQK 97 (97)
T ss_dssp EEEEEECCCCC
T ss_pred eeEEEecCCCC
Confidence 99999999883
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=9.7e-11 Score=97.12 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=75.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |+...+.++.|. ++.+.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 85 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMA--GVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLF----DRP 85 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeC----CCE
Confidence 456899999999999999999999875 788889999986 5888999999999999999999999999997 788
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+.+.
T Consensus 86 l~v~~a~~~~ 95 (114)
T 2do0_A 86 MHVKMDERAL 95 (114)
T ss_dssp CEEEECSCCC
T ss_pred EEEEEcccCC
Confidence 9999997643
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.1e-10 Score=95.39 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=74.3
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|..+ |....+.++.|..+ +.|||||.|.+.++|.++++.++|+.+. .+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 83 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI--GPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKIL----GK 83 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc--CCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcC----CC
Confidence 4567899999999999999999999987 78888999988443 6899999999999999999999999987 79
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2cqi_A 84 EVKVNWATTPS 94 (103)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999998654
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=9.9e-11 Score=95.70 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=73.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+ |+...+.++.|..+ +.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 84 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVE----GRK 84 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 456899999999999999999999875 78888999888643 8999999999999999999999999997 799
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cq3_A 85 IEVNNATARV 94 (103)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEcccCC
Confidence 9999998654
No 61
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.16 E-value=7.8e-11 Score=93.27 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=74.4
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.++++|.+++ .++|+.+. .+.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l 77 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGC--GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR----GRQI 77 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGG--CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET----TEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC----CcEE
Confidence 35799999999999999999999976 78889999999999999999999999999999999 99999997 8899
Q ss_pred EEEeecc
Q 009947 441 SLAYARI 447 (522)
Q Consensus 441 ~VsYAri 447 (522)
.|.||+.
T Consensus 78 ~V~~a~~ 84 (89)
T 3ucg_A 78 KVIPKRT 84 (89)
T ss_dssp EEEETTT
T ss_pred EEEEccC
Confidence 9999975
No 62
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.16 E-value=3.9e-11 Score=103.21 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=75.4
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCce--EeecccCCCCcceeEEEEeccChhhHHHHHHHhcCC----ccc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF--LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGK----KWE 432 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDF--lYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGk----kW~ 432 (522)
....+||.|+|||..+|+++|+++|.++ |.... +.++.|..++.+.|||||.|.+. +|.+.++.+||+ .+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~--G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY--AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG--CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 3567899999999999999999999986 67766 99999999999999999999999 999999999999 776
Q ss_pred cCCCccEEEEEeeccc
Q 009947 433 KFNSEKVASLAYARIQ 448 (522)
Q Consensus 433 ~fnS~KVc~VsYAriQ 448 (522)
.+.+.|.||+-.
T Consensus 97 ----gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 ----GKTINVEFAKGS 108 (131)
T ss_dssp ----GCCCCCEECCCS
T ss_pred ----CEEEEEEECCCC
Confidence 788999999764
No 63
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=7e-11 Score=96.83 Aligned_cols=82 Identities=11% Similarity=0.135 Sum_probs=74.9
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ + ..-+.++.|..++.+.|||||.|.+.++|.+++ .++|..+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~ 84 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL--S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG----DRS 84 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS--C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET----TEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC--C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC----CeE
Confidence 457899999999999999999999876 5 788999999999999999999999999999999 89999997 789
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dng_A 85 LRVDIAEGRK 94 (103)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999997643
No 64
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.15 E-value=5.1e-11 Score=103.46 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=76.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |+...+.++.|..++...|||||.|.+.++|.++++.++|..+. .+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~ 117 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 117 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTT--SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 556899999999999999999999875 78889999999999999999999999999999999999999987 788
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
+.|.||+.+
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 999999764
No 65
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.4e-11 Score=97.27 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=70.7
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|++++..+ |+...+.++.|..++.+.|||||.|.++++|.++++.+||+.+. .+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 75 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ----AQ 75 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC----EE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe----eE
Confidence 3567899999999999999999999875 78889999999999999999999999999999999999999887 44
Q ss_pred EEEEEee
Q 009947 439 VASLAYA 445 (522)
Q Consensus 439 Vc~VsYA 445 (522)
.+.|.|+
T Consensus 76 ~~~~~~~ 82 (85)
T 1x4e_A 76 MAKQSGP 82 (85)
T ss_dssp SCCSSCC
T ss_pred EEeecCC
Confidence 4444443
No 66
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=2.1e-10 Score=91.83 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=73.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|... ...-+.++.| .++.+.|||||.|.+.++|.++++ ++|..+. .+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~---~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~----gr 77 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL---KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMG----GR 77 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS---CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEET----TE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC---CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeC----Cc
Confidence 3567899999999999999999999875 5778899999 888999999999999999999999 9999997 78
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.||+-+
T Consensus 78 ~i~v~~a~~~ 87 (91)
T 2dgw_A 78 YIEVFREKSG 87 (91)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEECCcC
Confidence 9999999765
No 67
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.14 E-value=1.4e-10 Score=91.84 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=72.2
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
++..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++. +|+.+. .+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~----g~ 80 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKF--GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLD----GR 80 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEEC----CE
Confidence 4677899999999999999999999875 7889999999999999999999999999999999965 777776 78
Q ss_pred EEEEEee
Q 009947 439 VASLAYA 445 (522)
Q Consensus 439 Vc~VsYA 445 (522)
.+.|.+|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8899887
No 68
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.1e-10 Score=95.05 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=71.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ --+.++.| .++.+.|||||.|.++++|.++++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-----g~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 82 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKA-----TFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRA 82 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSC-----SEEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-----CEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeE
Confidence 457899999999999999999998753 34577777 77889999999999999999999999999997 899
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+-+.+
T Consensus 83 l~v~~a~~~~~ 93 (101)
T 2fc9_A 83 IRLELQGPRGS 93 (101)
T ss_dssp EEEEECSSCCC
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 69
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.14 E-value=1.2e-10 Score=98.25 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=72.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..-|||.|+|||..+|+++|+++|.++ |...-+.++.|.. .+.|||||.|.++++|.++++.++|+.+. .+.
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~ 74 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLN----DRK 74 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhcc--CCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 346899999999999999999999986 7888889988853 37899999999999999999999999997 789
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+.+.
T Consensus 75 i~V~~a~~~~ 84 (115)
T 4f25_A 75 VFVGRFKSRK 84 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCcc
Confidence 9999997643
No 70
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=104.37 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=77.2
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCC--cCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRG--TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G--~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
+.++||.|+|||..+|+++|+++|..+ | +..-+.++.|..++.+.|||||.|.+.++|.++++.+||+.+. .
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----G 126 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSI--GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----G 126 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHT--TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHH--CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 567899999999999999999999886 6 7888999999999999999999999999999999999999998 8
Q ss_pred cEEEEEeecccChH
Q 009947 438 KVASLAYARIQGQA 451 (522)
Q Consensus 438 KVc~VsYAriQGk~ 451 (522)
+.+.|.||+-|...
T Consensus 127 r~l~V~~a~~~~~~ 140 (156)
T 3n9u_C 127 EKVDVRPATRQNLS 140 (156)
T ss_dssp EECEEEECCHHHHH
T ss_pred eEeEEEEcCCCcch
Confidence 99999999876543
No 71
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.5e-10 Score=94.37 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=72.4
Q ss_pred CccceEEEecCCCccCHHHHH----HHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCC
Q 009947 360 DTRTTLMIKNIPNKYTSKMLL----AAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 435 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl----~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fn 435 (522)
...+||.|+|||..+|+++|+ +++.++ |+..-+.++.|..+ .|||||.|.++++|.++++.+||+.+.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~--- 78 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIG--- 78 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 467899999999999999999 777765 78888999999877 799999999999999999999999998
Q ss_pred CccEEEEEeeccc
Q 009947 436 SEKVASLAYARIQ 448 (522)
Q Consensus 436 S~KVc~VsYAriQ 448 (522)
.+.+.|.||+-.
T Consensus 79 -gr~l~V~~a~~~ 90 (96)
T 2dgx_A 79 -SKKILVSLATGA 90 (96)
T ss_dssp -TEEEEEEECCCS
T ss_pred -CeEEEEEEcCCC
Confidence 899999999754
No 72
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.13 E-value=6.3e-11 Score=103.42 Aligned_cols=85 Identities=19% Similarity=0.310 Sum_probs=78.3
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |+..-+.++.|..++.+.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~ 118 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRE 118 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGG--SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 456899999999999999999999986 78889999999999999999999999999999999999999987 788
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+-+.+
T Consensus 119 l~V~~a~~~~~ 129 (135)
T 2lea_A 119 LRVQMARYGRP 129 (135)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 73
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.13 E-value=1.9e-10 Score=98.16 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=75.7
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
.|||.|+|||..+|+++|++++.+. |...-+.+..|..++.+.|||||.|.++++|.++++.++|..+. .+.+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~l~ 75 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ----TKTIK 75 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC----CceEE
Confidence 6899999999999999999999985 78889999999989999999999999999999999999999997 78899
Q ss_pred EEeecccC
Q 009947 442 LAYARIQG 449 (522)
Q Consensus 442 VsYAriQG 449 (522)
|.||+.+.
T Consensus 76 v~~~~~~~ 83 (167)
T 1fxl_A 76 VSYARPSS 83 (167)
T ss_dssp EEECCCCC
T ss_pred EEecCCCc
Confidence 99997543
No 74
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.1e-10 Score=95.82 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=74.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCC-CcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKN-KCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFkn-kcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
...+||.|+|||..+|+++|+++|..+ | ...+.++.|..+ +.+.|||||.|.+.++|.+++ .++|..+. .+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 84 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----NK 84 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS--C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET----TE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC--C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC----Cc
Confidence 456899999999999999999999976 6 888999999988 889999999999999999999 99999997 78
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 85 ~l~V~~a~~~~ 95 (104)
T 1wi8_A 85 RIRVDVADQAQ 95 (104)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 99999997643
No 75
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.12 E-value=1.8e-10 Score=100.60 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=78.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++.+||+.+. .+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 140 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GR 140 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----Ce
Confidence 3557899999999999999999999886 78999999999999999999999999999999999999999987 78
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 141 ~l~v~~a~~~~ 151 (158)
T 2kn4_A 141 ELRVQMARYGR 151 (158)
T ss_dssp EEEEEEECCSS
T ss_pred EEEEEECCCCC
Confidence 99999998654
No 76
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=9.8e-11 Score=95.66 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=74.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhh-cCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc-cccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDE-NHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK-WEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe-~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk-W~~fnS~ 437 (522)
+..+||.|+|||..+|+++|+++|.. + |...-+.++.|. ++.+.|||||.|.+.++|.++++.++|+. +. .
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~--G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~----g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVY--PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG----S 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHC--TTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS----S
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhC--CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC----C
Confidence 45789999999999999999999998 5 788899999998 88899999999999999999999999998 76 6
Q ss_pred cEEEEEeeccc
Q 009947 438 KVASLAYARIQ 448 (522)
Q Consensus 438 KVc~VsYAriQ 448 (522)
+.+.|.||+-+
T Consensus 80 ~~l~v~~a~~~ 90 (104)
T 2dhg_A 80 KPVRLSVAIPK 90 (104)
T ss_dssp SCCCCCBCCCC
T ss_pred EeEEEEEccCC
Confidence 77889998654
No 77
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.12 E-value=9.3e-11 Score=90.52 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=69.6
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
|||.|+|||..+|+++|++++... |....+.++.|..++.+.|||||.|.+.++|.++++.++ ..+. .+.+.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT--SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEE
Confidence 689999999999999999999875 788999999999999999999999999999999999998 7776 677888
Q ss_pred Eee
Q 009947 443 AYA 445 (522)
Q Consensus 443 sYA 445 (522)
.||
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 887
No 78
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.8e-10 Score=95.26 Aligned_cols=81 Identities=12% Similarity=0.203 Sum_probs=71.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |....+.++.| +.+.|||||.|.+.++|.++++.+||+.+. .+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 90 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYR 90 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeE
Confidence 456899999999999999999999986 77877888654 447899999999999999999999999987 789
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 91 l~V~~a~~~~ 100 (109)
T 1x4a_A 91 LRVEFPRSGR 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEEcccCC
Confidence 9999998654
No 79
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.2e-10 Score=97.56 Aligned_cols=82 Identities=15% Similarity=0.264 Sum_probs=76.4
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.+.++|.++++.+||..+. .+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 157 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GR 157 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC----Cc
Confidence 4567899999999999999999999875 88899999999999999999999999999999999999999997 89
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
.+.|.||+
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 99999996
No 80
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.12 E-value=5e-11 Score=95.05 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=72.0
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
+||.|+|||..+|+++|+++|..+ |+..-+.++.|..++.+.|||||.|.+.+ |.++++.+||+.+. .+.+.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF--GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH--TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEE
Confidence 689999999999999999999986 78999999999999999999999999999 99999999999987 788999
Q ss_pred EeecccCh
Q 009947 443 AYARIQGQ 450 (522)
Q Consensus 443 sYAriQGk 450 (522)
.||.-+-.
T Consensus 75 ~~a~~~~~ 82 (90)
T 2ki2_A 75 TEANPKKS 82 (90)
T ss_dssp EEC-----
T ss_pred EEcCCCCC
Confidence 99976543
No 81
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.12 E-value=1.4e-10 Score=89.52 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=69.1
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
+|.|+|||..+|+++|++++... |...-+.++.|..++.+.|||||.|.+.++|.++++ ++|+.+. .+.+.|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF--GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT--SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEE
Confidence 58999999999999999999985 889999999999999999999999999999999987 8999987 7778888
Q ss_pred ee
Q 009947 444 YA 445 (522)
Q Consensus 444 YA 445 (522)
||
T Consensus 74 ~A 75 (75)
T 2mss_A 74 KA 75 (75)
T ss_dssp CC
T ss_pred eC
Confidence 86
No 82
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2.9e-10 Score=92.91 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=73.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++ +++.+. .+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~----g~ 83 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID----GR 83 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET----TE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc--CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC----Ce
Confidence 4567899999999999999999999886 788899999999999999999999999999999998 466665 78
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.||+-+
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cqg_A 84 WCDCKLPNSK 93 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEecCCC
Confidence 8999999764
No 83
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.11 E-value=2.1e-10 Score=102.19 Aligned_cols=86 Identities=15% Similarity=0.253 Sum_probs=77.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|.|||..+|+++|+++|..+ |.+..+.|+.|..++.+.|||||.|.+.++|..+++.+||..+. .+.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 143 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQT 143 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 346799999999999999999999986 78999999999999999999999999999999999999999997 789
Q ss_pred EEEEeecccChH
Q 009947 440 ASLAYARIQGQA 451 (522)
Q Consensus 440 c~VsYAriQGk~ 451 (522)
+.|.||+.++..
T Consensus 144 l~V~~a~~~~~~ 155 (165)
T 1rk8_A 144 IQVDWCFVKGPK 155 (165)
T ss_dssp CEEEESEECC--
T ss_pred EEEEEecCCCCC
Confidence 999999887653
No 84
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.5e-10 Score=96.70 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=75.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++. +|+.+. .+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~ 97 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID----GRV 97 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC----CEE
Confidence 345899999999999999999999875 7889999999999999999999999999999999999 999887 899
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+.+.
T Consensus 98 l~V~~a~~~~ 107 (116)
T 1x4b_A 98 VEPKRAVARE 107 (116)
T ss_dssp EEEECCSSCC
T ss_pred EEEEECCCCc
Confidence 9999998654
No 85
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=1.5e-10 Score=94.30 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=70.1
Q ss_pred ceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 363 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 363 TTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
|||.|+|||..+|+++|++++.++ |+...+.++.| +.|||||.|.+.++|.++++.++|+.+. .+.+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 69 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY--GPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRV 69 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH--CCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEE
Confidence 799999999999999999999987 78888999888 7799999999999999999999999987 777999
Q ss_pred EeecccC
Q 009947 443 AYARIQG 449 (522)
Q Consensus 443 sYAriQG 449 (522)
.||+-+.
T Consensus 70 ~~a~~~~ 76 (101)
T 2hvz_A 70 ELSTGMP 76 (101)
T ss_dssp EESSSCC
T ss_pred EEccCCC
Confidence 9998765
No 86
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.9e-10 Score=94.62 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=73.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCc-CceEeec-ccCCCCcceeEEEEeccChhhHHHHHHHhc--CCccccCC
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGT-YDFLYLP-IDFKNKCNVGYAFINMVSPSHIISFYEAFN--GKKWEKFN 435 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~-YDFlYLP-iDFknkcNvGYAFVNF~spe~a~~F~~~Fn--GkkW~~fn 435 (522)
...+||.|+|||..+|+++|+++|.++ |. ...+.++ .|..++.+.|||||.|.++++|.++++.++ +..+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~--- 80 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKV--TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW--- 80 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHH--STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT---
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHh--cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec---
Confidence 457899999999999999999999987 55 7777777 788888999999999999999999999996 57777
Q ss_pred CccEEEEEeecccC
Q 009947 436 SEKVASLAYARIQG 449 (522)
Q Consensus 436 S~KVc~VsYAriQG 449 (522)
.+.+.|.||+-+.
T Consensus 81 -g~~l~V~~a~~~~ 93 (109)
T 2dis_A 81 -GHQIAVDWAEPEI 93 (109)
T ss_dssp -TBCCEEEESCSSC
T ss_pred -CCeEEEEEcCCCC
Confidence 6789999998654
No 87
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2e-10 Score=95.75 Aligned_cols=84 Identities=8% Similarity=0.104 Sum_probs=76.3
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |...-+.|+.|..++...|||||.|.+.++|.+++ .++|+.+. .+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~ 95 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL----GVP 95 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC----CeE
Confidence 346799999999999999999999875 78888999999999999999999999999999999 99999997 789
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+-+..
T Consensus 96 l~V~~a~~~~~ 106 (114)
T 2cq4_A 96 IIVQASQAEKN 106 (114)
T ss_dssp EEEEEHHHHHH
T ss_pred EEEEecCCCcc
Confidence 99999986543
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.9e-10 Score=95.09 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=73.4
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|..+ |+...+.++.|.. .+.|||||.|.+.++|.++++.++|+.+. .+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 97 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVE----GR 97 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT--CCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc--CCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3457899999999999999999999876 7888899998843 38899999999999999999999999987 89
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.||+-+
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999754
No 89
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.09 E-value=2.7e-10 Score=97.81 Aligned_cols=83 Identities=25% Similarity=0.404 Sum_probs=76.6
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||..+|+++|++++.+. |...-+.+..|..++.+.|||||.|.++++|.++++.++|..+. .+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAI--GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR----NKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC----CcEE
Confidence 36899999999999999999999875 78889999999999999999999999999999999999999997 7889
Q ss_pred EEEeecccC
Q 009947 441 SLAYARIQG 449 (522)
Q Consensus 441 ~VsYAriQG 449 (522)
.|.||+.++
T Consensus 76 ~v~~~~~~~ 84 (168)
T 1b7f_A 76 KVSYARPGG 84 (168)
T ss_dssp EEEECCCCS
T ss_pred EEEecCCCc
Confidence 999998655
No 90
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.4e-10 Score=98.74 Aligned_cols=91 Identities=8% Similarity=0.034 Sum_probs=76.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|..+ |....+.+.+|..++.+.|||||.|.+.++|.++++ +||+.+. .+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~ 95 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKL--DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG----NRF 95 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSS--CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST----TSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 456899999999999999999999865 666666667777899999999999999999999999 9999987 788
Q ss_pred EEEEeecccChHHHHHhh
Q 009947 440 ASLAYARIQGQAALVTHF 457 (522)
Q Consensus 440 c~VsYAriQGk~ALi~hF 457 (522)
+.|.+|.-+.....++.+
T Consensus 96 i~V~~a~~~~~~~~~~~~ 113 (124)
T 1wel_A 96 IQVHPITKKGMLEKIDMI 113 (124)
T ss_dssp BEEEEECHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHH
Confidence 999999876654444443
No 91
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=3.3e-10 Score=90.72 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=69.4
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
+.+..+||.|+|||..+|+++|+++|..+ |+..-+.++ .|||||.|.+.++|.++++.++|..+. .
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g 69 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQY--GKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH----G 69 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTS--SCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS----S
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC----C
Confidence 34678999999999999999999999976 677777776 589999999999999999999999987 7
Q ss_pred cEEEEEeecccCh
Q 009947 438 KVASLAYARIQGQ 450 (522)
Q Consensus 438 KVc~VsYAriQGk 450 (522)
+.+.|.||+-+.+
T Consensus 70 ~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 70 VNINVEASKNKSK 82 (90)
T ss_dssp CBCEEECSSCCCC
T ss_pred cEEEEEECCCCCC
Confidence 8899999987643
No 92
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.07 E-value=3.9e-10 Score=95.95 Aligned_cols=91 Identities=7% Similarity=0.032 Sum_probs=77.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCc---CceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGT---YDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~---YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
+..+||.|+|||...|+++|+++|... |. ..-+.|+.|.. +.+.|||||.|.+.++|.++++ ++|+.+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---- 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDC--TIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMG---- 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTS--CBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEET----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeEC----
Confidence 457899999999999999999999875 55 77889999976 7889999999999999999999 9999887
Q ss_pred ccEEEEEeecccChHHHHHhhc
Q 009947 437 EKVASLAYARIQGQAALVTHFQ 458 (522)
Q Consensus 437 ~KVc~VsYAriQGk~ALi~hFr 458 (522)
.+.+.|.+|.-+-....+++.+
T Consensus 87 gr~i~V~~a~~~~~~~~~~~~~ 108 (118)
T 2db1_A 87 HRYIEVFKSHRTEMDWVLKHSG 108 (118)
T ss_dssp TEEEEEEEECHHHHHHHHHTTS
T ss_pred CeEEEEEECCHHHHHHHHHHhC
Confidence 7899999997655555555444
No 93
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.5e-10 Score=96.00 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=75.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcC-ceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTY-DFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~Y-DFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
+..+||.|+|||..+|+++|+++|..+ |.. +-+.|+.|. ++.+.|||||.|.+.++|.++++. +|+.+. .+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~----gr 84 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI--PVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN----GR 84 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS--CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET----TE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC--CCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC----Ce
Confidence 456789999999999999999999876 778 789999998 888999999999999999999998 999887 78
Q ss_pred EEEEEeecccChH
Q 009947 439 VASLAYARIQGQA 451 (522)
Q Consensus 439 Vc~VsYAriQGk~ 451 (522)
.+.|.||..+-..
T Consensus 85 ~i~v~~a~~~~~~ 97 (114)
T 2cpy_A 85 EAFVHVVTLEDMR 97 (114)
T ss_dssp EEEEEEECHHHHH
T ss_pred EEEEEECCHHHHH
Confidence 9999999765443
No 94
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.07 E-value=2.9e-10 Score=92.65 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=68.2
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|.++ |....+.+. .+.|||||.|.+.++|.++++.++|+.|. .+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 91 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQ----GR 91 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTT--SCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhC--CCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeEC----Ce
Confidence 3457899999999999999999999986 777777765 35799999999999999999999999998 78
Q ss_pred EEEEEeecc
Q 009947 439 VASLAYARI 447 (522)
Q Consensus 439 Vc~VsYAri 447 (522)
.+.|.||+-
T Consensus 92 ~l~V~~a~~ 100 (101)
T 2la4_A 92 NLRTGWGKE 100 (101)
T ss_dssp ECCCCBCCC
T ss_pred EEEEEeccC
Confidence 899999975
No 95
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=5.6e-10 Score=92.53 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=72.5
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
.....+||.|+|||..+|+++|+++|..+ |....+.++.| .|||||.|.+.++|.++++.++|+.+. .
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~----g 88 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE----G 88 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET----T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 35678899999999999999999999986 68888888776 699999999999999999999999987 7
Q ss_pred cEEEEEeecccCh
Q 009947 438 KVASLAYARIQGQ 450 (522)
Q Consensus 438 KVc~VsYAriQGk 450 (522)
+.+.|.||+-+..
T Consensus 89 ~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 89 HVVKCYWGKESPD 101 (109)
T ss_dssp EECEEECCCCCCS
T ss_pred cEEEEEecCCCCC
Confidence 8999999987653
No 96
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=3.8e-10 Score=91.86 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=69.2
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|.++ |+...+.++.| .|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~----g~~ 80 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR----GKQ 80 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTT--CCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT----TBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC----Cce
Confidence 356799999999999999999999876 78888888754 699999999999999999999999987 788
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999998653
No 97
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.05 E-value=4.7e-10 Score=100.29 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=77.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |....+.++.|..++.+.|||||.|.+.++|.++++.+||+.+. .+.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~ 196 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAF--GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG----GQY 196 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTS--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS----SSB
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhcc--CCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC----CcE
Confidence 456899999999999999999999875 79999999999999999999999999999999999999999987 788
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
+.|.||+..
T Consensus 197 i~V~~a~~~ 205 (216)
T 2qfj_A 197 LRVGKAVTP 205 (216)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999754
No 98
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.05 E-value=2.3e-10 Score=88.11 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=68.0
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
||.|+|||..+|+++|++++.+. |...-+.++.|..++.+.|||||.|.++++|.++++. +|..+. .+.+.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF--GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG----LSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH--SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT----TBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC----CEEEEEE
Confidence 68999999999999999999986 7888999999999999999999999999999999986 888776 6777777
Q ss_pred ee
Q 009947 444 YA 445 (522)
Q Consensus 444 YA 445 (522)
+|
T Consensus 74 ~a 75 (75)
T 1iqt_A 74 VA 75 (75)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 99
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.05 E-value=4.7e-10 Score=93.37 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=72.4
Q ss_pred cCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 357 SGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 357 ~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
...+..+||.|+|||..+|+++|+++|..+ |...-+.++.|-. +.|||||.|.+.++|.++++.+||..+.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~---- 73 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKITAEEMYDIFGKY--GPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVS---- 73 (115)
T ss_dssp CCTTCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSS----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEEC----
Confidence 345667899999999999999999999875 7888888887644 4799999999999999999999999987
Q ss_pred ccEEEEEeecc
Q 009947 437 EKVASLAYARI 447 (522)
Q Consensus 437 ~KVc~VsYAri 447 (522)
.+.+.|.||+-
T Consensus 74 g~~l~v~~a~~ 84 (115)
T 3lqv_A 74 NRYLVVLYYNA 84 (115)
T ss_dssp SCBCEEEECCH
T ss_pred CeEEEEEEecC
Confidence 78899999975
No 100
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.7e-10 Score=90.12 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCc-CceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcC-CccccCC
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGT-YDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNG-KKWEKFN 435 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~-YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnG-kkW~~fn 435 (522)
+.+..+||.|+|||..+|+++|+++|..+ |. .+.+.+ .+.|||||.|.+.++|.++++.+|| ..+.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~--- 71 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDR--KLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELH--- 71 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHT--TCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEET---
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHc--CCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeEC---
Confidence 34567899999999999999999999986 55 555554 3579999999999999999999999 8887
Q ss_pred CccEEEEEeecccC
Q 009947 436 SEKVASLAYARIQG 449 (522)
Q Consensus 436 S~KVc~VsYAriQG 449 (522)
.+.+.|.||+-+.
T Consensus 72 -g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 72 -GKIMEVDYSVSKK 84 (93)
T ss_dssp -TEECEEEECCCCC
T ss_pred -CEEEEEEEccCcc
Confidence 7899999998653
No 101
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.05 E-value=5.7e-10 Score=101.96 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=77.8
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
+.+..|||.|+|||..+|+++|+++|.++ |....++++.|. ++.+.|||||.|.+.++|.++++.++|+.+. .
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~----G 156 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD----G 156 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHT--SCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC----C
Confidence 45678999999999999999999999985 788999999998 8899999999999999999999999999987 7
Q ss_pred cEEEEEeecccC
Q 009947 438 KVASLAYARIQG 449 (522)
Q Consensus 438 KVc~VsYAriQG 449 (522)
+.+.|.||....
T Consensus 157 r~l~V~~a~~~~ 168 (177)
T 2f3j_A 157 RPMDIQLVASQI 168 (177)
T ss_dssp SBCEEEEESSGG
T ss_pred EEEEEEEecCCC
Confidence 889999997653
No 102
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.04 E-value=5.8e-10 Score=96.34 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=75.2
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.++++|.++++.+||+.+. .+.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 165 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKK 165 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc--CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC----CeE
Confidence 347899999999999999999999975 88899999999989999999999999999999999999999997 789
Q ss_pred EEEEeec
Q 009947 440 ASLAYAR 446 (522)
Q Consensus 440 c~VsYAr 446 (522)
+.|.||.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999983
No 103
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.04 E-value=4e-10 Score=94.93 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=74.7
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||..+|+++|+++|..+ |...-+.++.|..++.+.|||||.|.+.++|.+++ .++|+.+. .+.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l 107 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC--GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR----GRTI 107 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT--SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC----CeEE
Confidence 46799999999999999999999976 78888999999889999999999999999999999 89999997 7899
Q ss_pred EEEeeccc
Q 009947 441 SLAYARIQ 448 (522)
Q Consensus 441 ~VsYAriQ 448 (522)
.|.||+-+
T Consensus 108 ~V~~a~~~ 115 (124)
T 2jwn_A 108 KVLPKRTN 115 (124)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99999854
No 104
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=6.2e-10 Score=92.54 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=69.3
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcccc-CCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK-FNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~-fnS~K 438 (522)
...+||.|+|||..+|+++|+++|.++ |++..+.++.| |||||.|.+.++|.++++.+||+.+.. ....+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 346899999999999999999999986 78888888887 999999999999999999999999973 22238
Q ss_pred EEEEEeecc
Q 009947 439 VASLAYARI 447 (522)
Q Consensus 439 Vc~VsYAri 447 (522)
.+.|.||+-
T Consensus 84 ~i~V~~a~~ 92 (108)
T 1x4c_A 84 YIRVKVDGP 92 (108)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999999975
No 105
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=6.5e-10 Score=97.14 Aligned_cols=96 Identities=10% Similarity=0.148 Sum_probs=81.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCC--CcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHR--GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~--G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
+..++|.|+|||...|+++|+++|..++. |..+-++|+.| +++...|||||.|.+.++|.++++. +|+.+. .
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~----g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLG----K 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESS----S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC----C
Confidence 55789999999999999999999998743 45789999999 6888999999999999999999997 888776 6
Q ss_pred cEEEEEeecccChHHHHHhhccCC
Q 009947 438 KVASLAYARIQGQAALVTHFQNSS 461 (522)
Q Consensus 438 KVc~VsYAriQGk~ALi~hFrNSs 461 (522)
+.++|..|.-+-....++..+++.
T Consensus 95 R~i~V~~a~~~e~~~~~~~~~~~p 118 (123)
T 2dha_A 95 RYIELFRSTAAEVQQVLNRFSSAS 118 (123)
T ss_dssp CEECCEEECHHHHHHHHHHHTTCS
T ss_pred eEEEEEECCHHHHHHHHHhccCCC
Confidence 788999898766666666655554
No 106
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.03 E-value=6.4e-10 Score=93.46 Aligned_cols=80 Identities=18% Similarity=0.335 Sum_probs=69.9
Q ss_pred cCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 357 SGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 357 ~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
.+....+||.|+|||..+|+++|+++|..+ |....+.+. .|||||.|.+.++|.++++.++|+.+.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~---- 91 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPF--GPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA---- 91 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTT--SCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET----
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC----
Confidence 345667899999999999999999999875 777777776 699999999999999999999999996
Q ss_pred ccEEEEEeecccCh
Q 009947 437 EKVASLAYARIQGQ 450 (522)
Q Consensus 437 ~KVc~VsYAriQGk 450 (522)
.+.+.|.||+-+.+
T Consensus 92 g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 92 NQPLEVVYSKLPAK 105 (108)
T ss_dssp TEECEEESCSCCC-
T ss_pred CeEEEEEEecCCCC
Confidence 89999999987754
No 107
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.03 E-value=3.8e-10 Score=106.98 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=77.6
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCC--cCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRG--TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G--~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+|||.|+|||..+|+++|+++|..+ | +..-+.|+.|..++.+.|||||.|.+.++|.++++.+||+.+. .+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT--TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT----TB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH--CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC----CE
Confidence 68899999999999999999999876 6 8888999999999999999999999999999999999999997 78
Q ss_pred EEEEEeecccChHH
Q 009947 439 VASLAYARIQGQAA 452 (522)
Q Consensus 439 Vc~VsYAriQGk~A 452 (522)
.|.|.||+-+....
T Consensus 141 ~l~V~~a~~~~~~~ 154 (229)
T 3q2s_C 141 NPVVTPVNKQFLSQ 154 (229)
T ss_dssp CCEEEECCHHHHHH
T ss_pred EeEEEECCCCccch
Confidence 89999998765543
No 108
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.03 E-value=5.5e-10 Score=89.52 Aligned_cols=78 Identities=14% Similarity=0.306 Sum_probs=66.9
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
|...++||.|+|||..+|+++|++++.++ +...+.+ | .+.|||||.|.++++|.++++.+||+.+. .
T Consensus 1 Gs~~~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i--~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g 67 (88)
T 1wg1_A 1 GSSGSSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYV--D----RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----G 67 (88)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEE--E----GGGTEEEECCSCHHHHHHHHHHHTTEEET----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEE--e----CCCcEEEEEECCHHHHHHHHHHhCCCeEC----C
Confidence 34568999999999999999999999865 4444555 3 56799999999999999999999999997 8
Q ss_pred cEEEEEeeccc
Q 009947 438 KVASLAYARIQ 448 (522)
Q Consensus 438 KVc~VsYAriQ 448 (522)
+.+.|.||+..
T Consensus 68 ~~l~V~~a~~~ 78 (88)
T 1wg1_A 68 KDLIVQLQPTD 78 (88)
T ss_dssp EEEEEEECCCC
T ss_pred cEEEEEEcCCC
Confidence 89999999754
No 109
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=2.6e-10 Score=95.43 Aligned_cols=84 Identities=5% Similarity=0.093 Sum_probs=73.4
Q ss_pred CccceEEEecCCCccCHHHHH---HHHhhcCCCcCceEeecccCCC---CcceeEEEEeccChhhHHHHHHHhcCCcccc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLL---AAIDENHRGTYDFLYLPIDFKN---KCNVGYAFINMVSPSHIISFYEAFNGKKWEK 433 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl---~iIDe~~~G~YDFlYLPiDFkn---kcNvGYAFVNF~spe~a~~F~~~FnGkkW~~ 433 (522)
..++||.|.|||..+|+++|+ +++.++ |+..-+.++.|..+ +.+.|||||.|.+.++|.++++.+||+.+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~--G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~- 89 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD- 89 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc--CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC-
Confidence 357899999999999999999 777764 78888999888764 456799999999999999999999999987
Q ss_pred CCCccEEEEEeecccC
Q 009947 434 FNSEKVASLAYARIQG 449 (522)
Q Consensus 434 fnS~KVc~VsYAriQG 449 (522)
.+.+.|.||+.+-
T Consensus 90 ---gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 ---GRTLKASLGTTKY 102 (111)
T ss_dssp ---TEEEEEESCCCCS
T ss_pred ---CEEEEEEeccccc
Confidence 8899999998653
No 110
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.03 E-value=8.7e-10 Score=94.00 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=73.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...++|.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.+.++|.++++.+||+.+. +....
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~~~ 161 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS--GATEP 161 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT--TCSSC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhc--CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC--CCccc
Confidence 346799999999999999999999986 78889999999989999999999999999999999999999886 23456
Q ss_pred EEEEee
Q 009947 440 ASLAYA 445 (522)
Q Consensus 440 c~VsYA 445 (522)
+.|.||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 899997
No 111
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.03 E-value=3.5e-10 Score=91.06 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=71.1
Q ss_pred CccceEEEecCCCccCHHHHH----HHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCC
Q 009947 360 DTRTTLMIKNIPNKYTSKMLL----AAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 435 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl----~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fn 435 (522)
+..+||.|+|||..+|+++|+ +++..+ |....+.++ +++.+.|||||.|.+.++|.++++.++|..+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFY--- 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECC---HHHHHTTCEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEE---cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC---
Confidence 457899999999999999999 777665 677677766 35567799999999999999999999999996
Q ss_pred CccEEEEEeecccChH
Q 009947 436 SEKVASLAYARIQGQA 451 (522)
Q Consensus 436 S~KVc~VsYAriQGk~ 451 (522)
.+.+.|.||+-+...
T Consensus 78 -g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 78 -DKPMRIQYAKTDSDI 92 (97)
T ss_dssp -TEECEEEECSSCCTH
T ss_pred -CcEEEEEEccCCCcc
Confidence 799999999987654
No 112
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.02 E-value=4.3e-10 Score=90.60 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=69.1
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|..+ |....+ ..++.+.|||||.|.+.++|.++++.++|..+. .+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 81 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GR 81 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE--EEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC--CcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----Ce
Confidence 3467899999999999999999999875 444333 457778999999999999999999999999997 78
Q ss_pred EEEEEeecccCh
Q 009947 439 VASLAYARIQGQ 450 (522)
Q Consensus 439 Vc~VsYAriQGk 450 (522)
.+.|.||+-++.
T Consensus 82 ~l~v~~a~~~~~ 93 (96)
T 1fjc_A 82 SVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEECSSSCC
T ss_pred EEEEEEcCCCCC
Confidence 899999987653
No 113
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=8.4e-10 Score=89.79 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=68.6
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+..|....+.++ .|||||.|.+.++|.++++.+||+.+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 80 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD----GSP 80 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET----TEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC----CcE
Confidence 45689999999999999999999998755666666554 579999999999999999999999997 789
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+-+.+
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987653
No 114
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.02 E-value=7.8e-10 Score=94.93 Aligned_cols=82 Identities=20% Similarity=0.133 Sum_probs=74.3
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.+.++|.++++.+||+.+. ...+.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~~~ 162 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE--GGSQP 162 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT--TCSSC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec--CCCeE
Confidence 457899999999999999999999875 78899999999989999999999999999999999999999886 23488
Q ss_pred EEEEee
Q 009947 440 ASLAYA 445 (522)
Q Consensus 440 c~VsYA 445 (522)
+.|.||
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 899987
No 115
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.01 E-value=8.5e-10 Score=90.60 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=68.6
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|..+ |...-+.++ .|||||.|.+.++|.++++.++|+.+. .+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~----g~ 73 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLE----GE 73 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH--SCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccC----CC
Confidence 3457899999999999999999999986 677777765 359999999999999999999999987 88
Q ss_pred EEEEEeecccCh
Q 009947 439 VASLAYARIQGQ 450 (522)
Q Consensus 439 Vc~VsYAriQGk 450 (522)
.+.|.||+-+..
T Consensus 74 ~l~v~~a~~~~~ 85 (103)
T 2dgu_A 74 NIEIVFAKPPDQ 85 (103)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEcCCCcc
Confidence 999999987543
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=6.9e-10 Score=87.31 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=66.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHh-cCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAF-NGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~F-nGkkW~~fnS~K 438 (522)
...+||.|+|||..+|+++|++++..+ |....+.++. +.|||||.|.+.++|.++++.+ +|..+. .+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~----g~ 77 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQF--GEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVN----GR 77 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTT--SCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEET----TE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhC--CCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeEC----CC
Confidence 456899999999999999999999876 6777777765 3699999999999999999998 999987 78
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
.+.|.|||
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 89999996
No 117
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=2e-09 Score=86.51 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=68.7
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|..+ |+...+.++.| ||||.|.+.++|.++++.+||+.+. .+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~----g~ 72 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY--GPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQ----GK 72 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT--SCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeC----Cc
Confidence 3567899999999999999999999985 78888887643 9999999999999999999999997 89
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 73 ~l~V~~a~~~~ 83 (92)
T 2dgt_A 73 RMHVQLSTSRL 83 (92)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 99999997653
No 118
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.00 E-value=2.6e-10 Score=92.95 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=71.2
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |...- .+..|..++.+.|||||.|.+.++|.++++ ++|..+. .+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~ 86 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL--FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF----GNE 86 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH--HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT----TBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC----CcE
Confidence 456799999999999999999999986 44433 667888888899999999999999999999 9999997 788
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 87 l~V~~a~~~~ 96 (101)
T 1fj7_A 87 IKLEKPKGRD 96 (101)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEcCCCC
Confidence 9999997643
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1e-09 Score=89.20 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=67.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |... +.+.. ..+.|||||.|.+.++|.++++.+||..+. .+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~--G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 85 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL--GSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLG----TDT 85 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT--TCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc--CCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEEC----CcE
Confidence 446799999999999999999999986 5554 33333 356799999999999999999999999987 788
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 86 l~V~~a~~~~ 95 (97)
T 2e5j_A 86 LRVALARQQR 95 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 120
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.99 E-value=1.2e-09 Score=96.49 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=78.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.++++|.++++.++|..+. .+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 185 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKK 185 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTB--SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 567899999999999999999999986 78889999999989999999999999999999999999999997 889
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+-..+
T Consensus 186 l~v~~a~~~~~ 196 (198)
T 2yh0_A 186 LLVQRASVGAK 196 (198)
T ss_dssp CEEEESCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 121
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.99 E-value=9.3e-10 Score=98.38 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=72.9
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
.-+||.|+|||..+|+++|+++|.++ |....+.++.|..++.+.|||||.|.+.++|.++++.++|..+. .+.+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~----g~~l 100 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPF--GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG----GRNI 100 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-----CCC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC----CeeE
Confidence 45799999999999999999999986 78889999999999999999999999999999999999999987 6778
Q ss_pred EEEeecccC
Q 009947 441 SLAYARIQG 449 (522)
Q Consensus 441 ~VsYAriQG 449 (522)
.|.++.-..
T Consensus 101 ~v~~~~~~~ 109 (216)
T 2qfj_A 101 KVGRPSNIG 109 (216)
T ss_dssp EEECCSCCG
T ss_pred EEecCCCcc
Confidence 888876554
No 122
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.98 E-value=7.6e-10 Score=92.79 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=71.8
Q ss_pred CCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 358 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
..+..+||.|+|||..+|+++|+++|..+ |....+.++.|..++.+.|||||.|.+.++|.++++.. |..+. .
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~----g 93 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD----S 93 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET----T
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHcc--CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC----C
Confidence 34567899999999999999999999875 88999999999999999999999999999999999985 56666 7
Q ss_pred cEEEEEeeccc
Q 009947 438 KVASLAYARIQ 448 (522)
Q Consensus 438 KVc~VsYAriQ 448 (522)
+.+.|.||..+
T Consensus 94 ~~l~V~~a~~~ 104 (109)
T 2rs2_A 94 KTIDPKVAFPR 104 (109)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEEEccCC
Confidence 88999998754
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.98 E-value=9.2e-10 Score=97.67 Aligned_cols=84 Identities=6% Similarity=0.021 Sum_probs=74.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCc---CceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGT---YDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~---YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
+..+||.|+|||...|+++|+++|... |. ...+.|+.|.. +.+.|||||.|.+.++|.++++ +||+.+.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~--G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~---- 113 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDC--TIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMG---- 113 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTC--CCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEEC----
Confidence 456899999999999999999999875 66 78899999987 8899999999999999999999 9999887
Q ss_pred ccEEEEEeecccChH
Q 009947 437 EKVASLAYARIQGQA 451 (522)
Q Consensus 437 ~KVc~VsYAriQGk~ 451 (522)
.+.+.|.+|.-.-.+
T Consensus 114 gr~i~V~~a~~~e~~ 128 (136)
T 2hgl_A 114 HRYIEVFKSHRTEMD 128 (136)
T ss_dssp SSEEEEEECCHHHHH
T ss_pred CEEEEEEECChHHHH
Confidence 788999998654433
No 124
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=8.4e-10 Score=91.40 Aligned_cols=81 Identities=10% Similarity=0.131 Sum_probs=70.7
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCce-EeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF-LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDF-lYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
+..+||.|+|||...|+++|+++|... |...- +.|+.| .++.+.|||||.|.++++|.++++. +|+.+. .+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~----gr 84 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGL--EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIG----HR 84 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTC--CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS----SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhC----Cc
Confidence 457899999999999999999999875 66655 889999 8899999999999999999999998 998876 66
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.+|.-+
T Consensus 85 ~i~v~~~~~~ 94 (104)
T 1wg5_A 85 YIEIFKSSRA 94 (104)
T ss_dssp CCEEEEECTT
T ss_pred EEEEEECCHH
Confidence 7888888654
No 125
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.98 E-value=6.4e-10 Score=96.27 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=72.1
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceE--eeccc---CCCCcceeEEEEeccChhhHHHHHHHhcCCcccc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL--YLPID---FKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 433 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFl--YLPiD---FknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~ 433 (522)
.+..+||.|+|||..+|+++|+++|..+ |....+ .+++| ..++.+.|||||.|.+.++|.++++.+||+.+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~- 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRY--VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF- 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGG--CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC-
Confidence 3567899999999999999999999986 555543 34444 357788999999999999999999999999997
Q ss_pred CCCccEEEEEeecccC
Q 009947 434 FNSEKVASLAYARIQG 449 (522)
Q Consensus 434 fnS~KVc~VsYAriQG 449 (522)
.+.+.|.||+.+.
T Consensus 119 ---g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 ---GKPMVVQFARSAR 131 (143)
T ss_dssp ---TEECEEEECCCSC
T ss_pred ---CcEEEEEECCCCC
Confidence 8999999997644
No 126
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=1e-09 Score=92.49 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=67.5
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..|||.|+|||..+|+++|+++|..+ |....+.|+. ..|||||.|.+.++|.++++.+||+.+. .+.+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 76 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFH----HVPL 76 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEE
Confidence 46899999999999999999999976 7888787763 5689999999999999999999999987 7889
Q ss_pred EEEeecc
Q 009947 441 SLAYARI 447 (522)
Q Consensus 441 ~VsYAri 447 (522)
.|.||+.
T Consensus 77 ~V~~a~~ 83 (111)
T 1whx_A 77 YLEWAPI 83 (111)
T ss_dssp EEEEEET
T ss_pred EEEECCC
Confidence 9999975
No 127
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.52 E-value=5.5e-11 Score=99.62 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=75.3
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCce--------EeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF--------LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKW 431 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDF--------lYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW 431 (522)
...+||.|+|||..+|+++|+++|.++ |...- +.++.|..++.+.|||||.|.+.++|.++++.+||+.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 456899999999999999999999886 55555 88999988999999999999999999999999999999
Q ss_pred ccCCCccEEEEEeecccC
Q 009947 432 EKFNSEKVASLAYARIQG 449 (522)
Q Consensus 432 ~~fnS~KVc~VsYAriQG 449 (522)
. .+.+.|.||+-+.
T Consensus 83 ~----g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 S----GNPIKVSFATRRA 96 (116)
Confidence 7 7889999997653
No 128
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-09 Score=90.38 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=70.6
Q ss_pred CccceEEEecCCCcc------CHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcccc
Q 009947 360 DTRTTLMIKNIPNKY------TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 433 (522)
Q Consensus 360 D~RTTLMIRNIPNKy------Tq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~ 433 (522)
+..+||.|.|||... |+++|++++..+ |....++++ ..++.+.|||||.|.++++|.++++.+||+.|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~- 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD- 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS-
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC-
Confidence 446899999999999 789999999886 788888888 367788999999999999999999999999997
Q ss_pred CCCcc-EEEEEeec
Q 009947 434 FNSEK-VASLAYAR 446 (522)
Q Consensus 434 fnS~K-Vc~VsYAr 446 (522)
.+ .+.|.||.
T Consensus 88 ---g~~~l~V~~a~ 98 (105)
T 2nlw_A 88 ---KQHTFRVNLFT 98 (105)
T ss_dssp ---TTCEEEEECSC
T ss_pred ---CCceEEEEEcc
Confidence 67 89999986
No 129
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.97 E-value=7.2e-10 Score=92.23 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=76.6
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcC-CCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENH-RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~-~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
.+..+||.|+|||...|+++|+++|.... .+....+.|+.|.. +.+.|||||.|.+.++|.++++ ++|+.+. .
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----g 81 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMG----Q 81 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSS----S
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeC----C
Confidence 46788999999999999999999998752 23378899999977 8899999999999999999999 8998876 6
Q ss_pred cEEEEEeecccChHHHHHh
Q 009947 438 KVASLAYARIQGQAALVTH 456 (522)
Q Consensus 438 KVc~VsYAriQGk~ALi~h 456 (522)
+.+.|.+|.-+-....+++
T Consensus 82 r~i~V~~a~~~~~~~~~~~ 100 (107)
T 2lmi_A 82 RYVEVYEINNEDVDALMKS 100 (107)
T ss_dssp SCCCCEECCHHHHHHHHHT
T ss_pred eEEEEEECCHHHHHHHHHh
Confidence 7789999876554444443
No 130
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=2e-09 Score=87.31 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=68.2
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |+..-+.++.+ .|||||.|.+.++|.++++.+||+.+.. ..+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~--~g~~ 84 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGG--PDRR 84 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSS--SSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCC--CCcE
Confidence 456899999999999999999999986 67777776644 6899999999999999999999998852 2577
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 8999998653
No 131
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.95 E-value=2.9e-09 Score=87.56 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=68.2
Q ss_pred CCccceEEEecCCC-ccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 359 EDTRTTLMIKNIPN-KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 359 ~D~RTTLMIRNIPN-KyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
....+||.|+|||. .+|+++|+++|..+ |....+.++ .|||||.|.+.++|.++++.++|..+. .
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~--G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~----g 84 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF----G 84 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG--SCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET----T
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 35678999999998 99999999999986 677777763 699999999999999999999999987 7
Q ss_pred cEEEEEeecccC
Q 009947 438 KVASLAYARIQG 449 (522)
Q Consensus 438 KVc~VsYAriQG 449 (522)
+.+.|.||+-++
T Consensus 85 ~~l~V~~a~~~~ 96 (97)
T 2xnq_A 85 KKLILEVSSSNA 96 (97)
T ss_dssp EECEEEECCCCC
T ss_pred EEEEEEecCCCC
Confidence 889999998764
No 132
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.95 E-value=2.9e-09 Score=91.66 Aligned_cols=85 Identities=12% Similarity=0.170 Sum_probs=73.8
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCC--cceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNK--CNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknk--cNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
..+||.|+|||..+|+++|+++|.++ |...-+.++.|..++ .+.|||||.|.++++|.++++.++|..+.. ...+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~-~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQY--GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP-GMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT-TCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc-CCcc
Confidence 46899999999999999999999986 789999999999887 899999999999999999999999988752 2356
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.+.++..+
T Consensus 79 ~~~~~~~~~~ 88 (175)
T 3nmr_A 79 PIQMKPADSE 88 (175)
T ss_dssp CCEEEECGGG
T ss_pred ceEEcccccc
Confidence 6677777644
No 133
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.94 E-value=4.5e-10 Score=92.23 Aligned_cols=81 Identities=12% Similarity=0.175 Sum_probs=70.6
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccC-CCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDF-KNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDF-knkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
.+..+||.|+|||..+|+++|+++|..+ | ..-+.++.|. .++.+.|||||.|.+.++|.+++ .++|..+. .
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~----g 87 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----N 87 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS--C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT----T
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC----C
Confidence 3567899999999999999999999875 6 8888999998 58889999999999999999999 99999987 7
Q ss_pred cEEEEEeecc
Q 009947 438 KVASLAYARI 447 (522)
Q Consensus 438 KVc~VsYAri 447 (522)
+.+.|.||+-
T Consensus 88 ~~l~V~~a~~ 97 (100)
T 2j76_E 88 RRIRVDVADQ 97 (100)
T ss_dssp BCCCCEECCC
T ss_pred eEEEEEeccC
Confidence 7889999874
No 134
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.94 E-value=3.2e-09 Score=97.30 Aligned_cols=84 Identities=15% Similarity=0.257 Sum_probs=76.2
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..|||-|+|||..+|+++|+++|.++ |+...+.|+.|..++.+.|||||.|.+.++|.++++.++|+.+. .+.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~----g~~i 87 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPA--GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK----GKPV 87 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC----Cccc
Confidence 45799999999999999999999986 78889999999999999999999999999999999999999987 7888
Q ss_pred EEEeecccCh
Q 009947 441 SLAYARIQGQ 450 (522)
Q Consensus 441 ~VsYAriQGk 450 (522)
.|.+|..+..
T Consensus 88 ~~~~~~~~~~ 97 (213)
T 4f02_A 88 RIMWSQRDPS 97 (213)
T ss_dssp EEEECCCCTH
T ss_pred cccccccccc
Confidence 8888876544
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.92 E-value=4.3e-09 Score=87.30 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=66.4
Q ss_pred ccceEEEecCCCc-cCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 361 TRTTLMIKNIPNK-YTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 361 ~RTTLMIRNIPNK-yTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..+||.|+|||.. +|+++|+++|..+ |....+.+ +.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~--G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 91 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY--GRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLA----GQT 91 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG--SCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEET----TEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC----CeE
Confidence 4579999999999 9999999999986 67777776 5799999999999999999999999997 789
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
+.|.||+-+
T Consensus 92 l~V~~a~~~ 100 (110)
T 1wf1_A 92 LDINMAGEP 100 (110)
T ss_dssp CCEEESCCC
T ss_pred EEEEECCCC
Confidence 999999754
No 136
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.92 E-value=2.8e-09 Score=93.87 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=73.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|+++|.++ |....+.++.|..++.+.|||||.|.+.++|.++++. +|..+. .+.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~----g~~ 83 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQW--GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD----GRV 83 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC----CEE
Confidence 567899999999999999999999986 7888999999999999999999999999999999987 888776 788
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
+.|.+|..+
T Consensus 84 l~v~~~~~~ 92 (196)
T 1l3k_A 84 VEPKRAVSR 92 (196)
T ss_dssp CEEEECCC-
T ss_pred eeeecccCc
Confidence 888888654
No 137
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.92 E-value=3e-09 Score=91.42 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=69.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCC-cCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRG-TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G-~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
..+++|.|+|||..+|+++|++++.+. | +..++.++.+ .+.|||||.|.+.++|.++++.+||+.+. .+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~--G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr 95 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLAREN--SLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFR----GS 95 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHH--TCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEET----TE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHh--CCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEEC----Ce
Confidence 467899999999999999999999987 6 7777777543 37899999999999999999999999997 78
Q ss_pred EEEEEeecc
Q 009947 439 VASLAYARI 447 (522)
Q Consensus 439 Vc~VsYAri 447 (522)
.+.|.+|+-
T Consensus 96 ~i~V~~a~~ 104 (111)
T 2jvr_A 96 VITVERDDN 104 (111)
T ss_dssp EEEEEESCC
T ss_pred EEEEEECCC
Confidence 899999874
No 138
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.92 E-value=1.4e-09 Score=88.77 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
+...+||.|+|||..+|+++|++++..+ |....+.++.|. ++.+.|||||.|.+.++|.++++ +|..+. .+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~----g~ 76 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARY--GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFH----GK 76 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeEC----CE
Confidence 4457899999999999999999999886 788899999997 88999999999999999999999 777776 67
Q ss_pred EEEEEeecc
Q 009947 439 VASLAYARI 447 (522)
Q Consensus 439 Vc~VsYAri 447 (522)
.+.|.+|..
T Consensus 77 ~l~v~~a~~ 85 (102)
T 2xs2_A 77 KLKLGPAIR 85 (102)
T ss_dssp ECEEEEEEE
T ss_pred EEEEEECCc
Confidence 788888864
No 139
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=3.6e-09 Score=84.70 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=68.2
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|..+ |....+.++. |||||.|.+.++|.++++.++|+.+. .+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~----g~ 71 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERR--GRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVK----GK 71 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHH--SCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcC--CCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 3567899999999999999999999986 6777777763 39999999999999999999999997 88
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 72 ~l~v~~a~~~~ 82 (90)
T 2dnp_A 72 RINVELSTKGQ 82 (90)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEECCCCC
Confidence 99999998654
No 140
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=1.8e-09 Score=93.04 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=70.1
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcC--CccccCCC
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNG--KKWEKFNS 436 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnG--kkW~~fnS 436 (522)
....+||.|+|||.++|+++|++++.++ |+..-+.++.| .|||||.|.+.++|.++++.+++ ..+.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~f--G~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~---- 80 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR---- 80 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHH--CCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC----
Confidence 3567899999999999999999999987 78888888776 59999999999999999999975 4555
Q ss_pred ccEEEEEeecccCh
Q 009947 437 EKVASLAYARIQGQ 450 (522)
Q Consensus 437 ~KVc~VsYAriQGk 450 (522)
.+.+.|.||+-|..
T Consensus 81 Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 81 GQPIYIQFSNHKEL 94 (105)
T ss_dssp TEECCBCCCSSSSC
T ss_pred CEEEEEEEcCCCCC
Confidence 78999999987654
No 141
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.90 E-value=5.3e-09 Score=90.03 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=71.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...++|.|+|||..+|+++|++++..+ |....+.++.|. ++.+.|||||.|.+.++|.++++.+||..+.. ...+.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~ 168 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSF--GQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-GCSSP 168 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT-TCSSC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhC--CCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccC-CCCCC
Confidence 357799999999999999999999986 788889998884 57789999999999999999999999987652 23578
Q ss_pred EEEEee
Q 009947 440 ASLAYA 445 (522)
Q Consensus 440 c~VsYA 445 (522)
+.|.||
T Consensus 169 l~V~~a 174 (175)
T 3nmr_A 169 MVVKFA 174 (175)
T ss_dssp CEEEEC
T ss_pred eEEEec
Confidence 899998
No 142
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.2e-09 Score=86.29 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=67.4
Q ss_pred CCccceEEEecCCC-ccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 359 EDTRTTLMIKNIPN-KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 359 ~D~RTTLMIRNIPN-KyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
.+..+||.|+|||. .+|+++|+++|..+ |...-+.++ .|||||.|.+.++|.++++.++|..+. .
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g 72 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNF----G 72 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT--CCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB----T
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC----C
Confidence 35678999999998 99999999999875 777777774 699999999999999999999999987 7
Q ss_pred cEEEEEeecccCh
Q 009947 438 KVASLAYARIQGQ 450 (522)
Q Consensus 438 KVc~VsYAriQGk 450 (522)
+.+.|.||+-+.+
T Consensus 73 ~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 73 KKLILEVSSSNAR 85 (96)
T ss_dssp TTBCEEEEECCCC
T ss_pred cEEEEEEcCcCCC
Confidence 7889999976544
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.89 E-value=3.1e-09 Score=92.69 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
....+||.|+|||..+|+++|+++|..+ |....+.++.| +.|||||.|.+.++|.++++.+||+.+. .+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 138 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY--GPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLC----GC 138 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH--SCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEEC----Ce
Confidence 3567899999999999999999999987 78888888887 5799999999999999999999999986 78
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.||+-+
T Consensus 139 ~l~v~~a~~~ 148 (150)
T 2i2y_A 139 RVRVELSNGE 148 (150)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 8999999765
No 144
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.89 E-value=3.5e-09 Score=93.30 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=72.7
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.+.++|.++++. +|+.+. .+.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~----G~~i 175 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN----GHNC 175 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET----TEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC----CEEE
Confidence 34799999999999999999999875 8899999999998999999999999999999999987 888887 7889
Q ss_pred EEEeecccC
Q 009947 441 SLAYARIQG 449 (522)
Q Consensus 441 ~VsYAriQG 449 (522)
.|.||.-+-
T Consensus 176 ~v~~a~~k~ 184 (196)
T 1l3k_A 176 EVRKALSKQ 184 (196)
T ss_dssp EEEECC---
T ss_pred EEEecCChh
Confidence 999997543
No 145
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.89 E-value=3.6e-09 Score=90.98 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=73.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.+.++|.++++ .+|..+. .+.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~ 157 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQW--GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK----DRK 157 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTT--SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS----SSC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhC--ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC----CeE
Confidence 346799999999999999999999975 889999999999899999999999999999999998 7888776 788
Q ss_pred EEEEeecc
Q 009947 440 ASLAYARI 447 (522)
Q Consensus 440 c~VsYAri 447 (522)
+.|.||.-
T Consensus 158 i~V~~a~p 165 (167)
T 2cjk_A 158 IEIKRAEP 165 (167)
T ss_dssp EEEEECCC
T ss_pred EEEeecCC
Confidence 99999964
No 146
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3.8e-09 Score=89.08 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=66.9
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcC--CccccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNG--KKWEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnG--kkW~~fnS~ 437 (522)
...+||.|+|||.++|+++|++++..+ |+..-+.++.| .|||||.|.+.++|.++++.+++ ..+. .
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f--G~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----G 80 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR----N 80 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET----T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC----C
Confidence 456799999999999999999999876 77777777655 69999999999999999998864 4454 7
Q ss_pred cEEEEEeecccCh
Q 009947 438 KVASLAYARIQGQ 450 (522)
Q Consensus 438 KVc~VsYAriQGk 450 (522)
+.+.|.||+.|..
T Consensus 81 r~l~V~~a~~~~~ 93 (101)
T 2cq1_A 81 QPIYIQYSNHKEL 93 (101)
T ss_dssp EECEEEECSCSSC
T ss_pred cEEEEEEcCcccC
Confidence 8999999987653
No 147
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.87 E-value=3.9e-09 Score=92.49 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=67.9
Q ss_pred CccceEEEecCCCccCHHHHHH----HHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCC
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLA----AIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 435 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~----iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fn 435 (522)
...+||.|+|||.++|.++|++ +|..+ |+..-++++ +++.+.|||||.|.+.++|.++++.+||+.+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~--- 98 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ--- 98 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC---
Confidence 3467999999999999999875 44444 666556654 35667899999999999999999999999987
Q ss_pred CccEEEEEeecccCh
Q 009947 436 SEKVASLAYARIQGQ 450 (522)
Q Consensus 436 S~KVc~VsYAriQGk 450 (522)
.+.+.|.||+-+..
T Consensus 99 -gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 99 -GNPLVITFSETPQS 112 (127)
T ss_dssp -TSCCEEEECCCCCH
T ss_pred -CCEEEEEEccCcch
Confidence 78899999987664
No 148
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3.5e-09 Score=89.00 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=70.8
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||-|+|||..+|+++|++++..+ |...-+.|+.|.. +...|||||.|.+.++|.++++ .+|..+. .+.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~--G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l 81 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYK----ETDL 81 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS--SCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCT----TTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc--CCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEEC----CEEE
Confidence 45799999999999999999999975 8899999999987 8889999999999999999999 8999887 6778
Q ss_pred EEEeec
Q 009947 441 SLAYAR 446 (522)
Q Consensus 441 ~VsYAr 446 (522)
.|.||+
T Consensus 82 ~V~~~~ 87 (103)
T 1s79_A 82 LILFKD 87 (103)
T ss_dssp EEEEHH
T ss_pred EEEEch
Confidence 888875
No 149
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=3.8e-09 Score=88.10 Aligned_cols=80 Identities=9% Similarity=0.094 Sum_probs=68.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||...|+++|+++|... |.. -+.|+.|. ++.+.|||||.|.+.++|.++++ .||+.+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~ 83 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPL--NPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQ----HRY 83 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSC--CCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSS----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--Cce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 456899999999999999999999875 433 78899997 88899999999999999999995 6998876 667
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
++|.+|.-.
T Consensus 84 i~V~~~~~~ 92 (102)
T 1wez_A 84 VELFLNSTA 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 888887654
No 150
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=4.6e-09 Score=91.76 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=69.2
Q ss_pred CCccceEEEec--CCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcc-ccCC
Q 009947 359 EDTRTTLMIKN--IPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKW-EKFN 435 (522)
Q Consensus 359 ~D~RTTLMIRN--IPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW-~~fn 435 (522)
.+.-++|.|+| ||..+|+++|+++|.++ |+...++++.| .|||||.|.++++|.++++.+||+.+ ....
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~f--G~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHH--SCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456799966 99999999999999997 68888888754 69999999999999999999999998 5444
Q ss_pred CccEEEEEeec
Q 009947 436 SEKVASLAYAR 446 (522)
Q Consensus 436 S~KVc~VsYAr 446 (522)
..+++.|.||+
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 58899999986
No 151
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=4.6e-09 Score=88.89 Aligned_cols=77 Identities=9% Similarity=0.074 Sum_probs=66.0
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc--cccCCCcc
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK--WEKFNSEK 438 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk--W~~fnS~K 438 (522)
..+||.|+|||..+|+++|++++.++ |+..-+.+..+ .|||||.|.+.++|.++++.++|.. +. .+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f--G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~----Gr 81 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIA----GQ 81 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSS----SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC----CE
Confidence 45799999999999999999999876 78877777643 6999999999999999999998765 43 78
Q ss_pred EEEEEeecccC
Q 009947 439 VASLAYARIQG 449 (522)
Q Consensus 439 Vc~VsYAriQG 449 (522)
.+.|.||+-+.
T Consensus 82 ~l~V~~a~~~~ 92 (104)
T 1wex_A 82 QAFFNYSTSKR 92 (104)
T ss_dssp BCEEEECSSSS
T ss_pred EEEEEEccCcc
Confidence 89999998654
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.86 E-value=1.4e-09 Score=92.00 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=57.4
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
..+||.|.|||..+|+++|+++|..+ |++..+.|+.| |||||.|.+.++|.++++.+||+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46899999999999999999999976 78888888877 99999999999999999999999987
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.85 E-value=6.3e-09 Score=88.59 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=69.8
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 443 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~Vs 443 (522)
||.|+|||..+|+++|++++... |...-+.++.|.. +.+.|||||.|.+.++|.++++.++|..+. .+.+.|.
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v~ 74 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVG--GPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIE----NNIVKIN 74 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGG--SCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred EEEECCCCCcCCHHHHHHHHHhc--CCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccC----CCeeEEE
Confidence 79999999999999999999986 7888899988864 558999999999999999999999999997 7888999
Q ss_pred eeccc
Q 009947 444 YARIQ 448 (522)
Q Consensus 444 YAriQ 448 (522)
||.-.
T Consensus 75 ~~~~~ 79 (166)
T 3md3_A 75 WAFQS 79 (166)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98643
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=9e-09 Score=82.84 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=69.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceE-eecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFl-YLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
...+||.|+|||..+|+++|+++|..+ |....+ +++.|..++. |||.|.+.++|.++++.+||+.+. .+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~----g~ 82 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY--GVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLE----NF 82 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH--SCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCS----SC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 456899999999999999999999986 788888 6888866543 999999999999999999999997 78
Q ss_pred EEEEEeecc
Q 009947 439 VASLAYARI 447 (522)
Q Consensus 439 Vc~VsYAri 447 (522)
.+.|.||+-
T Consensus 83 ~l~V~~a~~ 91 (96)
T 2e44_A 83 TLKVAYIPD 91 (96)
T ss_dssp BCEEEECCC
T ss_pred EEEEEEcCc
Confidence 899999974
No 155
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.82 E-value=2.8e-09 Score=84.02 Aligned_cols=66 Identities=18% Similarity=0.388 Sum_probs=59.5
Q ss_pred ceEEEecCCCcc------CHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccc
Q 009947 363 TTLMIKNIPNKY------TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 432 (522)
Q Consensus 363 TTLMIRNIPNKy------Tq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~ 432 (522)
+||.|.|||... |+++|++++..+ |+..-+.++ ..++.+.|||||.|.++++|.++++.+||+.+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 699999999999 779999999875 778778877 357788999999999999999999999999987
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=5.4e-09 Score=90.73 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=72.3
Q ss_pred ccccCchhhccCCCccceEEEecCCCc-cCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHH
Q 009947 347 QYQLDLDKIISGEDTRTTLMIKNIPNK-YTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEA 425 (522)
Q Consensus 347 q~~ldl~rI~~G~D~RTTLMIRNIPNK-yTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~ 425 (522)
..-.|+.+.+...+..+||.|+|||.. +|+++|++++.++ |+...+.|.. ..|||||.|.+.++|.++++.
T Consensus 10 ~~~~~~k~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~f--G~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~ 81 (112)
T 1x4f_A 10 PEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMR------MKSQAFIEMETREDAMAMVDH 81 (112)
T ss_dssp SCCCCCCCCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEET------TTTEEEEECSSHHHHHHHHHH
T ss_pred ccCChhhhccccCCCCCEEEEeCCCCccCCHHHHHHHHHhc--CCEEEEEEec------CCCEEEEEECCHHHHHHHHHH
Confidence 333555566555667889999999997 9999999999876 7888888752 369999999999999999999
Q ss_pred hcCCc--cccCCCccEEEEEeecc
Q 009947 426 FNGKK--WEKFNSEKVASLAYARI 447 (522)
Q Consensus 426 FnGkk--W~~fnS~KVc~VsYAri 447 (522)
+++.. +. .+.+.|.||+-
T Consensus 82 l~~~~~~l~----Gr~l~V~~a~~ 101 (112)
T 1x4f_A 82 CLKKALWFQ----GRCVKVDLSEK 101 (112)
T ss_dssp HHHSCCCSS----SSCCEEEEECS
T ss_pred hccCCceEC----CEEEEEEECcc
Confidence 97654 44 68889999964
No 157
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=1.2e-08 Score=89.38 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=68.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcC--CccccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNG--KKWEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnG--kkW~~fnS~ 437 (522)
...+||.|+|||..+|+++|+++|.++ |+..-+.++.| .|||||.|.+.++|.++++.+++ ..+. .
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~f--G~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~----G 96 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR----G 96 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTT--SCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBT----T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceEC----C
Confidence 345799999999999999999999876 88888888776 59999999999999999999985 4454 7
Q ss_pred cEEEEEeecccCh
Q 009947 438 KVASLAYARIQGQ 450 (522)
Q Consensus 438 KVc~VsYAriQGk 450 (522)
+.+.|.||+-+..
T Consensus 97 r~l~V~~a~~k~~ 109 (119)
T 2ad9_A 97 QPIYIQFSNHKEL 109 (119)
T ss_dssp BCCEEEECSSSSC
T ss_pred eEEEEEEccCCCC
Confidence 8899999987654
No 158
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.81 E-value=8.9e-09 Score=106.57 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=77.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+.-+||.|.|||..+|+++|.++|..+ |.+..+.|+.|..++.+.|||||.|.++++|..+++.+||+.|. .+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~ 173 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY--GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRR 173 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC----CEE
Confidence 456899999999999999999999985 88999999999999999999999999999999999999999997 899
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
|.|.||+-+
T Consensus 174 i~V~~a~~~ 182 (437)
T 3pgw_S 174 VLVDVERGR 182 (437)
T ss_pred EEEEEeCCC
Confidence 999999854
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.80 E-value=1.3e-08 Score=93.38 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=71.3
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
.++|.|+|||..+|+++|++++..+ |....+.++.|- ..+.|||||.|.+.++|.++++.+||+.+. .+.+.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~----g~~i~ 174 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVF 174 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred cccceECCcccccHHHHHHHHHhhc--CCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 4689999999999999999999986 788888888884 347999999999999999999999999997 78999
Q ss_pred EEeeccc
Q 009947 442 LAYARIQ 448 (522)
Q Consensus 442 VsYAriQ 448 (522)
|.||+-+
T Consensus 175 V~~a~~~ 181 (213)
T 4f02_A 175 VGRFKSR 181 (213)
T ss_dssp EEECCCH
T ss_pred EEEcCCC
Confidence 9999764
No 160
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=1.5e-08 Score=86.58 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=68.6
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||...|+++|+++|... +..-+.|+.|.. +...|||||.|.++++|.+++ .+||+.+. .+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~i 85 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMI----QRYV 85 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEET----TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeEC----CeEE
Confidence 45799999999999999999999875 567899999965 778999999999999999999 68999887 6788
Q ss_pred EEEeecc
Q 009947 441 SLAYARI 447 (522)
Q Consensus 441 ~VsYAri 447 (522)
+|..|.-
T Consensus 86 ~V~~a~~ 92 (109)
T 2dnn_A 86 EVSPATE 92 (109)
T ss_dssp EEEECCH
T ss_pred EEEECCc
Confidence 9987754
No 161
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.7e-08 Score=84.79 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=61.6
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCC---CcceeEEEEeccChhhHHHHHHHh---cCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKN---KCNVGYAFINMVSPSHIISFYEAF---NGKKW 431 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFkn---kcNvGYAFVNF~spe~a~~F~~~F---nGkkW 431 (522)
....+||.|+|||..+|+++|+++|.++ |... +.++.|..+ +.+.|||||.|.++++|.++++.+ +|+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRF--GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTT--CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 3456889999999999999999999876 7887 889999887 588999999999999999999998 66644
No 162
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.78 E-value=6.4e-09 Score=88.45 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=67.0
Q ss_pred CccceEEEecCCC-ccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc--cccCCC
Q 009947 360 DTRTTLMIKNIPN-KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK--WEKFNS 436 (522)
Q Consensus 360 D~RTTLMIRNIPN-KyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk--W~~fnS 436 (522)
+..++|-|+|||. .+|+++|++++.++ |+..-++|..| .|||||.|.+.++|..+++.++|.. +.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~f--G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---- 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVF---- 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEET----
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhc--CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceEC----
Confidence 4578999999999 99999999999987 78888888765 3899999999999999999999865 54
Q ss_pred ccEEEEEeecc
Q 009947 437 EKVASLAYARI 447 (522)
Q Consensus 437 ~KVc~VsYAri 447 (522)
.+.+.|.||+-
T Consensus 81 Gr~l~V~~a~~ 91 (102)
T 1x4d_A 81 GKPVRVHLSQK 91 (102)
T ss_dssp TEECEEEEECC
T ss_pred CcEEEEEECCC
Confidence 88999999984
No 163
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.77 E-value=1.1e-08 Score=89.13 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=66.6
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|++++..+ |....+ ..++.+.|||||.|.+.++|.++++.++|+.+. .+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 165 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRS 165 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTC--SEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET----TEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhc--CeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 457899999999999999999999874 444433 557788999999999999999999999999987 788
Q ss_pred EEEEeecc
Q 009947 440 ASLAYARI 447 (522)
Q Consensus 440 c~VsYAri 447 (522)
+.|.||+-
T Consensus 166 i~v~~a~~ 173 (175)
T 1fje_B 166 VSLYYTGE 173 (175)
T ss_dssp EEEEECSS
T ss_pred EEEEecCC
Confidence 99999963
No 164
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=2.3e-08 Score=81.23 Aligned_cols=78 Identities=19% Similarity=0.114 Sum_probs=66.7
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|+ .+|+++|+++|.++ |+..-+.++ .+.|||||.|.+.++|.++++.++|+.+. .+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~--G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~ 77 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE----SV 77 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTT--SCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET----TE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhC--CCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC----Ce
Confidence 345689999996 89999999999876 677666663 46799999999999999999999999986 78
Q ss_pred EEEEEeecccCh
Q 009947 439 VASLAYARIQGQ 450 (522)
Q Consensus 439 Vc~VsYAriQGk 450 (522)
.+.|.||+-+..
T Consensus 78 ~l~v~~a~~~~~ 89 (97)
T 1x5p_A 78 QLKVNIARKQPM 89 (97)
T ss_dssp EEEEECCSSCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987643
No 165
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.75 E-value=2.7e-08 Score=93.67 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=76.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.+.++|.++++.++|..+. .+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~ 166 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPF--GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG----PRT 166 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhc--CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcE
Confidence 456899999999999999999999986 78889999999999999999999999999999999999999987 789
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
+.|.||...
T Consensus 167 i~v~~a~~~ 175 (284)
T 3smz_A 167 LYVHWTDAG 175 (284)
T ss_dssp CEEEECCGG
T ss_pred EEEEECCCC
Confidence 999999753
No 166
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.75 E-value=2.5e-08 Score=85.33 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=66.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc--cccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK--WEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk--W~~fnS~ 437 (522)
....||-|+|||.++|+++|++++.++ |+..-+.+.. ..|||||.|.+.++|..+++.++|.. +. .
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f--G~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~----G 86 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF--GPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIA----G 86 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEET----T
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeC----C
Confidence 345689999999999999999999986 7777776653 35999999999999999999999986 44 7
Q ss_pred cEEEEEeeccc
Q 009947 438 KVASLAYARIQ 448 (522)
Q Consensus 438 KVc~VsYAriQ 448 (522)
|.+.|.||+-|
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 89999999865
No 167
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.74 E-value=1.8e-08 Score=95.21 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=73.3
Q ss_pred CCccceEEEecCCCc-cCHHHHHHHHhhcCCCcCceEeecccCC-CCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 359 EDTRTTLMIKNIPNK-YTSKMLLAAIDENHRGTYDFLYLPIDFK-NKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 359 ~D~RTTLMIRNIPNK-yTq~mLl~iIDe~~~G~YDFlYLPiDFk-nkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
....+||.|+|||.. +|+++|++++..+ |....+.++.|.. |+.+.|||||.|.++++|.+++ .+||+.+.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~---- 279 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGF--GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG---- 279 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGG--SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET----
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhcc--CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC----
Confidence 456789999999999 9999999999986 7888899999887 6889999999999999999999 99999987
Q ss_pred ccEEEEEeecc
Q 009947 437 EKVASLAYARI 447 (522)
Q Consensus 437 ~KVc~VsYAri 447 (522)
.+.+.|.||+-
T Consensus 280 g~~i~V~~a~~ 290 (292)
T 2ghp_A 280 NREISVSLADK 290 (292)
T ss_dssp TEEEEEEECCC
T ss_pred CcEEEEEEecC
Confidence 79999999974
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.73 E-value=1.4e-08 Score=87.18 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=65.3
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||..+|+++|+++|.++ |...-+.++.|..++.+.|||||.|.++++|.++++. +..+. .+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~----g~~i 73 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY--GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILD----GKVI 73 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT--CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEET----TEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccC----CeEc
Confidence 35799999999999999999999875 7899999999999999999999999999999999985 33333 3444
Q ss_pred EEEeec
Q 009947 441 SLAYAR 446 (522)
Q Consensus 441 ~VsYAr 446 (522)
.|.+|.
T Consensus 74 ~v~~~~ 79 (167)
T 2cjk_A 74 DPKRAI 79 (167)
T ss_dssp CCEECC
T ss_pred cccccc
Confidence 455554
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.73 E-value=3.3e-08 Score=93.06 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=74.1
Q ss_pred CccceEEEecCCCcc-CHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKY-TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKy-Tq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
...+||.|+|||..+ |+++|++++..+ |....+.++.|. ++.+.|||||.|.++++|.++++.++|+.+. .+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 254 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAV--HSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG----GS 254 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSS--SCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET----TE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCC--CCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC----Ce
Confidence 457899999999997 999999999875 889999999887 6778999999999999999999999999996 78
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.||+-.
T Consensus 255 ~l~v~~a~~~ 264 (284)
T 3smz_A 255 HLRVSFCAPG 264 (284)
T ss_dssp ECEEEECCSS
T ss_pred EEEEEEecCC
Confidence 9999999643
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.72 E-value=2.8e-08 Score=80.75 Aligned_cols=77 Identities=10% Similarity=0.143 Sum_probs=62.3
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..-+||.|+|||..+|+++|++++..+ |+..-+.++.| +.|||||.|.++++|. +.+|..+. ...+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~--G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~--~~g~~ 75 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY--GEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLI--IKGIS 75 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEE--ETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcc--cCCEE
Confidence 457899999999999999999999876 78888999886 6799999999999987 46787554 23688
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.+|+-+.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 8999997643
No 171
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.72 E-value=8.5e-09 Score=89.77 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 359 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 359 ~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
.+..+||.|+|||..+|+++|+++|.+.+. .++ .+..|..++.+.|||||.|.++++|.+++ .++|..+. .+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~-~~~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 81 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFA-KND--LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF----GN 81 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHH-HHT--CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET----TE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCC-cce--EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC----Ce
Confidence 466899999999999999999999988641 222 45667778889999999999999999999 59999987 88
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.||..+
T Consensus 82 ~l~v~~~~~~ 91 (175)
T 1fje_B 82 EIKLEKPKGR 91 (175)
T ss_dssp EEEEECCCCS
T ss_pred EEEEecCCCc
Confidence 8999998754
No 172
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.71 E-value=2.6e-08 Score=88.82 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=69.3
Q ss_pred cceEEEecCCC-ccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 362 RTTLMIKNIPN-KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 362 RTTLMIRNIPN-KyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
.+||.|+|||. .+|+++|++++.++ |...-+.+..|. .|||||.|.++++|.++++.++|..+. .+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~--G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l 71 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY--GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH----GKPI 71 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT--CCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCS----SCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeec----CeEE
Confidence 58999999999 99999999999876 778888888775 689999999999999999999999986 7889
Q ss_pred EEEeecccC
Q 009947 441 SLAYARIQG 449 (522)
Q Consensus 441 ~VsYAriQG 449 (522)
.|.||+.+.
T Consensus 72 ~v~~a~~~~ 80 (198)
T 1qm9_A 72 RITLSKHQN 80 (198)
T ss_dssp EEEECCCCS
T ss_pred EEEEecCCC
Confidence 999998654
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=3.5e-08 Score=78.63 Aligned_cols=77 Identities=10% Similarity=0.143 Sum_probs=63.3
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..-+||.|+|||..+|+++|+++|.++ |...-+.++.| +.|||||.|.+.++|. +.++..+. -..+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~-----~~g~afV~f~~~~~a~----~~~~~~~~--~~g~~ 69 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQY--GDVMDVFIPKP-----FRAFAFVTFADDQIAQ----SLCGEDLI--IKGIS 69 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTT--SCCCEEECCSS-----CCSCCEEECSCHHHHH----HTTTCEEE--ETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEEecC-----CCCEEEEEECCHHHHH----HHhcCCce--eCCEE
Confidence 456899999999999999999999876 78888888766 6799999999999996 45676543 23688
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+-+.
T Consensus 70 l~v~~a~~~~ 79 (88)
T 1wf0_A 70 VHISNAEPKH 79 (88)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999997654
No 174
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.68 E-value=4.1e-08 Score=90.92 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=69.7
Q ss_pred CccceEEEecCCC-ccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPN-KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPN-KyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
...+||.|+|||. .+|+++|+++|.++ |...-+.+..|. .|||||.|.+.++|.++++.++|..+. .+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~--G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~ 100 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVY--GDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH----GK 100 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHH--TCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCS----SS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeEC----Ce
Confidence 3467999999999 99999999999987 778888887775 689999999999999999999999997 78
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.||+.+
T Consensus 101 ~l~v~~a~~~ 110 (229)
T 2adc_A 101 PIRITLSKHQ 110 (229)
T ss_dssp BCEEECCSCC
T ss_pred EEEEEEecCc
Confidence 8999999865
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.67 E-value=6.3e-08 Score=91.06 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=68.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcC--CCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENH--RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~--~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
...+||.|+|||..+|+++|++.|.+.+ .|...-++++. ++.+.|||||.|.+.++|.++++.+||..|. .
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g 79 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFY----D 79 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeC----C
Confidence 4578999999999999999885443332 36776676654 6668899999999999999999999999987 6
Q ss_pred cEEEEEeecccC
Q 009947 438 KVASLAYARIQG 449 (522)
Q Consensus 438 KVc~VsYAriQG 449 (522)
+.+.|.||+.+.
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999997654
No 176
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.67 E-value=3.7e-08 Score=83.61 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=65.6
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
-+-|.|+||+.+.|+++|++++.++ |+..-++|.. +.|||||.|.++++|.++++.+||.++. .+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~--G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH--GPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLA----NTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH--SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh--CCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEE
Confidence 4679999999999999999999997 6777777644 5799999999999999999999999998 89999
Q ss_pred EEee
Q 009947 442 LAYA 445 (522)
Q Consensus 442 VsYA 445 (522)
|.+|
T Consensus 75 V~~A 78 (89)
T 2wbr_A 75 AESP 78 (89)
T ss_dssp EECC
T ss_pred EEEC
Confidence 9999
No 177
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.66 E-value=2.2e-08 Score=88.20 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=65.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcC-ceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTY-DFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~Y-DFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
...+||.|+|||...|+++|+++|... +-. +-+.|+.|.. +.+.|||||.|.++++|.++++. +++.+. .+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~--~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~----gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL--EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIG----HR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS--CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBT----TB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC--CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEEC----CE
Confidence 345689999999999999999999875 322 2788999977 88899999999999999999986 677665 66
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
.+.|.+|.
T Consensus 112 ~I~V~~a~ 119 (126)
T 2hgm_A 112 YIEVFKSS 119 (126)
T ss_dssp CCCCEEEC
T ss_pred EEEEEECC
Confidence 77888775
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.65 E-value=4.4e-08 Score=90.91 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=68.7
Q ss_pred ccceEEEecCC-CccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 361 TRTTLMIKNIP-NKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 361 ~RTTLMIRNIP-NKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..+||.|+||| .++|+++|.+++..+ |...-+.++.| ..|||||.|.++++|.++++.+||+.+. .+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~--G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~ 71 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY--GNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMF----GQK 71 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT--SCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc--CCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEEC----Cce
Confidence 35799999999 899999999999875 77777777665 2599999999999999999999999997 789
Q ss_pred EEEEeecccC
Q 009947 440 ASLAYARIQG 449 (522)
Q Consensus 440 c~VsYAriQG 449 (522)
+.|.||+.+.
T Consensus 72 l~v~~s~~~~ 81 (205)
T 3tyt_A 72 MNVCVSKQPA 81 (205)
T ss_dssp CEEEECSCSC
T ss_pred EEEEEccCCc
Confidence 9999998654
No 179
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.64 E-value=5.7e-08 Score=91.81 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=76.2
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||..+|.++|+++|..+ |....+.++.| .++.+.|||||.|.+.++|.++++.+++..+-.....+.+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQF--GPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhc--CCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 46799999999999999999999876 78999999999 6888999999999999999999999987777666678899
Q ss_pred EEEeeccc
Q 009947 441 SLAYARIQ 448 (522)
Q Consensus 441 ~VsYAriQ 448 (522)
.|.||.-.
T Consensus 172 ~v~~~~~~ 179 (261)
T 3sde_A 172 IVEPMEQF 179 (261)
T ss_dssp EEEECCCE
T ss_pred EEeecccc
Confidence 99998754
No 180
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.64 E-value=1.3e-08 Score=90.82 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=68.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|+|||...|+++|+++|..+ | ..-+.|+.|.. +.+.|||||.|.++++|.+++ ..|++.+. .+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~--G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~----gR~ 114 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPL--N-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQ----HRY 114 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSC--C-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSS----SCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--C-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEEC----CEE
Confidence 456799999999999999999999876 4 45789999965 888999999999999999999 77998876 667
Q ss_pred EEEEeeccc
Q 009947 440 ASLAYARIQ 448 (522)
Q Consensus 440 c~VsYAriQ 448 (522)
++|.+|...
T Consensus 115 i~V~~a~~~ 123 (139)
T 2hgn_A 115 IELFLNSTT 123 (139)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 788877653
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.63 E-value=9.8e-08 Score=89.76 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=67.6
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
...+||.|+|||..+|+++|+++|..+ |.+..+.+..|. .|||||.|.+.++|.++++.+||+.+. ..+.
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~ 274 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQF--PGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKIT---QNNA 274 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhc--CCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeC---CCCE
Confidence 457899999999999999999999976 788777777443 489999999999999999999999886 2689
Q ss_pred EEEEeec
Q 009947 440 ASLAYAR 446 (522)
Q Consensus 440 c~VsYAr 446 (522)
+.|+||+
T Consensus 275 l~v~~ak 281 (282)
T 3pgw_A 275 MKISFAK 281 (282)
T ss_pred EEEEEec
Confidence 9999997
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.61 E-value=9.1e-08 Score=90.42 Aligned_cols=85 Identities=20% Similarity=0.186 Sum_probs=69.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCC-cCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRG-TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G-~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
...+||.|+|||..+|+++|++++..+ | ....++++.|.. +.+.|||||.|.+.++|.++++.++|+.+. .+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 187 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDI--NVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIE----GY 187 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHT--TCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHh--CCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeC----Cc
Confidence 457899999999999999999999985 7 888999988865 667999999999999999999999999997 68
Q ss_pred EEEEEeecccChH
Q 009947 439 VASLAYARIQGQA 451 (522)
Q Consensus 439 Vc~VsYAriQGk~ 451 (522)
.+.|.||..+.+.
T Consensus 188 ~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 188 TLVTKVSNPLEKS 200 (292)
T ss_dssp ECEEEECCCC---
T ss_pred EEEEEECCCCccc
Confidence 8999999866543
No 183
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=5.7e-08 Score=78.42 Aligned_cols=75 Identities=9% Similarity=0.046 Sum_probs=63.7
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||..+|+++|+++|.++ |...-+ ++|..++. ||||.|.+.++|.++++ ++|+.+. .+.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~----g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF--GPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLG----GHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT--SCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEET----TEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEEC----CEEE
Confidence 44699999999999999999999875 555544 77776665 99999999999999999 9999987 7888
Q ss_pred EEEeecc
Q 009947 441 SLAYARI 447 (522)
Q Consensus 441 ~VsYAri 447 (522)
.|.+|.-
T Consensus 75 ~V~~a~~ 81 (94)
T 2e5g_A 75 RVRPREQ 81 (94)
T ss_dssp CCBCSCC
T ss_pred EEEECCc
Confidence 8887753
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.58 E-value=7e-08 Score=75.89 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=60.0
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcC--CC-------cCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENH--RG-------TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 430 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~--~G-------~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk 430 (522)
...+||.|+|||..+|+++|++++..+. .| ....+.++.| .|||||.|.++++|.+++ .+||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 3467999999999999999999998761 13 4555666544 699999999999999999 999999
Q ss_pred cccCCCccEEEEE
Q 009947 431 WEKFNSEKVASLA 443 (522)
Q Consensus 431 W~~fnS~KVc~Vs 443 (522)
+. .+.+.|.
T Consensus 77 ~~----g~~l~V~ 85 (87)
T 2hzc_A 77 FQ----GQSLKIR 85 (87)
T ss_dssp ET----TEECEEE
T ss_pred EC----CeEEEEe
Confidence 87 6666665
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.58 E-value=1.4e-07 Score=89.26 Aligned_cols=75 Identities=16% Similarity=0.306 Sum_probs=65.9
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..++||.|+|||..+|+++|+++|..+ |...-+.+.. +.|||||.|.++++|.++++.++|..+. .+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~----g~~ 87 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERY--GEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILK----SRP 87 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGG--CCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEEC----Cce
Confidence 457899999999999999999999876 6777777743 3699999999999999999999999987 688
Q ss_pred EEEEeec
Q 009947 440 ASLAYAR 446 (522)
Q Consensus 440 c~VsYAr 446 (522)
+.|.||.
T Consensus 88 l~v~~a~ 94 (261)
T 3sde_A 88 LRIRFAT 94 (261)
T ss_dssp CEEEECC
T ss_pred eEeeecc
Confidence 8888885
No 186
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.57 E-value=1.5e-07 Score=87.17 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=67.6
Q ss_pred cceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEE
Q 009947 362 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 441 (522)
Q Consensus 362 RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~ 441 (522)
..+|.|+|||..+|+++|.++|.++ |+..-+++.. +.+.|||||.|.+.++|.++++.+||+.+.. ..+.+.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~f--G~V~~V~i~~----k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g--~g~~L~ 117 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFT----KNNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLR 117 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHH--SCEEEEEEEE----SSSCEEEEEEESCHHHHHHHHHHSTTBCSSS--SCSCEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhc--CCEEEEEEEe----CCCCCEEEEEECCHHHHHHHHHHhCCCEecC--CCcEEE
Confidence 4588999999999999999999987 7888777742 2357999999999999999999999999852 247899
Q ss_pred EEeeccc
Q 009947 442 LAYARIQ 448 (522)
Q Consensus 442 VsYAriQ 448 (522)
|.||+.+
T Consensus 118 V~~Ak~~ 124 (164)
T 1sjr_A 118 IDFSKLT 124 (164)
T ss_dssp EEECSSS
T ss_pred EEEecCC
Confidence 9999975
No 187
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.56 E-value=1.9e-07 Score=80.31 Aligned_cols=77 Identities=19% Similarity=0.118 Sum_probs=66.4
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
+..+||.|.|+ .+|+++|+++|..+ |....+.++ .+.|||||.|.+.++|.++++.++|..+. .+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~--G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT--CCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCS----SCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc--CCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 45789999996 59999999999876 677777764 46799999999999999999999999986 788
Q ss_pred EEEEeecccCh
Q 009947 440 ASLAYARIQGQ 450 (522)
Q Consensus 440 c~VsYAriQGk 450 (522)
+.|.||+-+..
T Consensus 103 l~V~~a~~~~~ 113 (121)
T 2bz2_A 103 LKVNIARKQPM 113 (121)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEeCCCCC
Confidence 99999987654
No 188
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.54 E-value=2.6e-07 Score=78.19 Aligned_cols=81 Identities=9% Similarity=0.080 Sum_probs=69.1
Q ss_pred ccceEEEecCCCc--c---CHHHHHHHHhhcCCCcCceEeecccCCC-CcceeEEEEeccChhhHHHHHHHhcCCccccC
Q 009947 361 TRTTLMIKNIPNK--Y---TSKMLLAAIDENHRGTYDFLYLPIDFKN-KCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 434 (522)
Q Consensus 361 ~RTTLMIRNIPNK--y---Tq~mLl~iIDe~~~G~YDFlYLPiDFkn-kcNvGYAFVNF~spe~a~~F~~~FnGkkW~~f 434 (522)
.-++|.|+|+... + ++++|++++.++ |+..-++++.|..+ +...|||||.|.++++|.++++.+||+.+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~-- 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG-- 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET--
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC--
Confidence 4568999999742 2 677888888765 88889999998654 578999999999999999999999999997
Q ss_pred CCccEEEEEeecc
Q 009947 435 NSEKVASLAYARI 447 (522)
Q Consensus 435 nS~KVc~VsYAri 447 (522)
.+.+.|.||+.
T Consensus 83 --Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 --GRVVKACFYNL 93 (105)
T ss_dssp --TEECEEEECCH
T ss_pred --CcEEEEEEcCH
Confidence 89999999975
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.53 E-value=1.8e-07 Score=83.32 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=66.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCC-cCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRG-TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G-~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
...+||.|+|||..+|+++|++++.++ | ....+.+-.+ ..|||||.|.+.++|.++++.++|+.+. ..+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~ 187 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG---ENH 187 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHT--TSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCS---SCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHc--CCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccC---CCC
Confidence 346899999999999999999999987 6 7777766222 2699999999999999999999999885 367
Q ss_pred EEEEEeeccc
Q 009947 439 VASLAYARIQ 448 (522)
Q Consensus 439 Vc~VsYAriQ 448 (522)
.+.|.||+-+
T Consensus 188 ~l~v~~a~~~ 197 (198)
T 1qm9_A 188 HLRVSFSKST 197 (198)
T ss_dssp SCCEEEECCC
T ss_pred eEEEEeeccc
Confidence 7899999754
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.51 E-value=2.1e-07 Score=86.16 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=66.5
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCC-cCceEee-cccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRG-TYDFLYL-PIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G-~YDFlYL-PiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
...+||.|+|||..+|+++|++++.++ | +...+.+ |. +.|||||.|.+.++|.++++.++|+.+. ..
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~---~g 217 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDLHNHDLG---EN 217 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTT--SCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHHTTCBSS---SS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHc--CCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHHCCCccC---CC
Confidence 446899999999999999999999986 6 6666665 42 3589999999999999999999999885 36
Q ss_pred cEEEEEeeccc
Q 009947 438 KVASLAYARIQ 448 (522)
Q Consensus 438 KVc~VsYAriQ 448 (522)
+.+.|+||+-+
T Consensus 218 ~~l~v~~a~~~ 228 (229)
T 2adc_A 218 HHLRVSFSKST 228 (229)
T ss_dssp CBCEEEECSSC
T ss_pred CeEEEEEecCC
Confidence 78999999854
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.49 E-value=5.7e-08 Score=85.65 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=61.7
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcC-ceEe----ecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCC
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTY-DFLY----LPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 435 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~Y-DFlY----LPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fn 435 (522)
..+||.|+|||..+|+++|+++|.++. +. +... ...+..+..+.|||||.|.+.++|.+++ .++|..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g--~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~--- 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQM--RLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ--- 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHH--HHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEET---
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHH--hhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc---
Confidence 457999999999999999999998761 11 1110 1122233456799999999999999999 89999987
Q ss_pred CccEEEEEeecc
Q 009947 436 SEKVASLAYARI 447 (522)
Q Consensus 436 S~KVc~VsYAri 447 (522)
.+.+.|.||+-
T Consensus 77 -g~~i~v~~~~~ 87 (198)
T 2yh0_A 77 -GQSLKIRRPHD 87 (198)
T ss_dssp -TEEEEEECCCC
T ss_pred -CceEEEeCCCC
Confidence 78899999864
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=4.7e-07 Score=75.93 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=61.5
Q ss_pred ccceEEEecC--CCccC---------HHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCC
Q 009947 361 TRTTLMIKNI--PNKYT---------SKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGK 429 (522)
Q Consensus 361 ~RTTLMIRNI--PNKyT---------q~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGk 429 (522)
.-.||.|+|| |..+. +++|++++.++ |+..-+++ .|. ...|||||.|.+.++|.++++.+||+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3568999999 44332 46777777764 78877776 443 26899999999999999999999999
Q ss_pred ccccCCCccEEEEEeecc
Q 009947 430 KWEKFNSEKVASLAYARI 447 (522)
Q Consensus 430 kW~~fnS~KVc~VsYAri 447 (522)
.+. .+.+.|.||.-
T Consensus 88 ~~~----gr~l~v~~a~~ 101 (112)
T 2dit_A 88 WFG----GRQITAQAWDG 101 (112)
T ss_dssp EET----TEECEEEECCS
T ss_pred EEC----CcEEEEEEeCC
Confidence 987 88999999864
No 193
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.44 E-value=6.5e-07 Score=79.90 Aligned_cols=86 Identities=12% Similarity=0.186 Sum_probs=69.2
Q ss_pred hccCCCccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeE-EEEeccChhhHHHHHHHhcCCcccc
Q 009947 355 IISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGY-AFINMVSPSHIISFYEAFNGKKWEK 433 (522)
Q Consensus 355 I~~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGY-AFVNF~spe~a~~F~~~FnGkkW~~ 433 (522)
...+......|.|+|||..+|+++|.++|.++ |+..-+.+..+ +.|+ |||.|.++++|.++++.+||+.+..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~y--G~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTS--SCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCc--CCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 33444566788899999999999999999986 78877777543 2476 9999999999999999999999972
Q ss_pred CCCccEEEEEeecccC
Q 009947 434 FNSEKVASLAYARIQG 449 (522)
Q Consensus 434 fnS~KVc~VsYAriQG 449 (522)
..+.+.|.||+.+.
T Consensus 94 --~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 94 --ACCTLRIDFSKLTS 107 (130)
T ss_dssp --TEEEEEEEECSCSS
T ss_pred --CCcEEEEEecCCCc
Confidence 35889999998753
No 194
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.41 E-value=4.7e-07 Score=83.58 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=67.6
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEE
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 440 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc 440 (522)
..+||.|+|||...|+++|.++|..+ |...-+.++.|. ++...|||||.|.+.++|.++++..+ ..+. .+.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~----Gr~l 179 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYK----ETDL 179 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTS--CCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEET----TEEC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcC--CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeEC----CEEE
Confidence 35799999999999999999999875 788899999986 47789999999999999999997764 4666 7788
Q ss_pred EEEeec
Q 009947 441 SLAYAR 446 (522)
Q Consensus 441 ~VsYAr 446 (522)
.|.+++
T Consensus 180 ~V~~~~ 185 (193)
T 2voo_A 180 LILFKD 185 (193)
T ss_dssp EEEETT
T ss_pred EEEEhH
Confidence 888865
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.40 E-value=6.5e-07 Score=83.06 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=66.1
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcCCCcC--ceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTY--DFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~Y--DFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
..+||.|+|||..+|+++|++++.++ |.. .-+-+..|- ++ ..|||||.|.+.++|.++++.+||+.+.......
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~--G~v~~~~v~~~~~~-~~-~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDEL--GVKRPTSVKVFSGK-SE-RSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHH--TCCCCSEEEECSCC-SS-SSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhc--CCcceEEEEEEcCC-CC-CceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 35689999999999999999999987 666 445554443 23 3499999999999999999999999998777776
Q ss_pred EEEEEee
Q 009947 439 VASLAYA 445 (522)
Q Consensus 439 Vc~VsYA 445 (522)
...|.||
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 7777665
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.39 E-value=1.7e-07 Score=80.89 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=61.1
Q ss_pred ccceEEEecCCCccCHHHHHHHHhhcC--CCcC-ceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCc
Q 009947 361 TRTTLMIKNIPNKYTSKMLLAAIDENH--RGTY-DFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 437 (522)
Q Consensus 361 ~RTTLMIRNIPNKyTq~mLl~iIDe~~--~G~Y-DFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~ 437 (522)
..+||.|+|||..+|+++|+++|.+.. .|-. +-.....+.+...+.|||||.|.++++|.+++ .++|..+. .
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~----g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ----G 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEET----T
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEec----C
Confidence 457999999999999999999999862 1200 00000111222344799999999999999999 89999987 7
Q ss_pred cEEEEEeeccc
Q 009947 438 KVASLAYARIQ 448 (522)
Q Consensus 438 KVc~VsYAriQ 448 (522)
+.+.|.+|+-.
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 88888887643
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.38 E-value=5.7e-07 Score=87.45 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=67.8
Q ss_pred CccceEEEecCCCcc---------CHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCc
Q 009947 360 DTRTTLMIKNIPNKY---------TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 430 (522)
Q Consensus 360 D~RTTLMIRNIPNKy---------Tq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkk 430 (522)
...+||-|.|||..+ |+++|+++|.++ |++.-+.+.. +.|||||.|.+.++|+.++++++|+.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 457899999999998 799999999986 8888887763 47999999999999999999999998
Q ss_pred c--------ccCCCccEEEEEeeccc
Q 009947 431 W--------EKFNSEKVASLAYARIQ 448 (522)
Q Consensus 431 W--------~~fnS~KVc~VsYAriQ 448 (522)
+ +.....+.+.|.||+-.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 8 11124788999999753
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.37 E-value=9.1e-07 Score=74.76 Aligned_cols=82 Identities=15% Similarity=0.256 Sum_probs=66.7
Q ss_pred ccceEEEecC--CCccCH--------HHHHHHHhhcCCCcCceEeecccCCCC--cceeEEEEeccChhhHHHHHHHhcC
Q 009947 361 TRTTLMIKNI--PNKYTS--------KMLLAAIDENHRGTYDFLYLPIDFKNK--CNVGYAFINMVSPSHIISFYEAFNG 428 (522)
Q Consensus 361 ~RTTLMIRNI--PNKyTq--------~mLl~iIDe~~~G~YDFlYLPiDFknk--cNvGYAFVNF~spe~a~~F~~~FnG 428 (522)
.-+.|.|+|+ |..+.. ++|++++.++ |+..-+++|.|..+. ...|||||.|.++++|.++++++||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 3457889998 655542 4666666654 889999999998653 5789999999999999999999999
Q ss_pred CccccCCCccEEEEEeeccc
Q 009947 429 KKWEKFNSEKVASLAYARIQ 448 (522)
Q Consensus 429 kkW~~fnS~KVc~VsYAriQ 448 (522)
+.+. .+++.|.|+...
T Consensus 82 ~~f~----GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFA----NRVVVTKYCDPD 97 (105)
T ss_dssp CEET----TEECEEEEECHH
T ss_pred CEeC----CCEEEEEEeCHH
Confidence 9997 899999998753
No 199
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=8.6e-07 Score=76.34 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=60.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcC--C-CcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENH--R-GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~--~-G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
...|+|.|+|||-+.+.++|+..|.+.+ . |+.=-+ ++ |+|||.|.+.++|.++++.++|..+-
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~---- 72 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVF---- 72 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSS----
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccC----
Confidence 4567799999999999999775444322 2 233222 33 99999999999999999999999887
Q ss_pred ccEEEEEeecccC
Q 009947 437 EKVASLAYARIQG 449 (522)
Q Consensus 437 ~KVc~VsYAriQG 449 (522)
.|.+.|.||+..-
T Consensus 73 gr~i~v~~A~~~s 85 (96)
T 2diu_A 73 GNRIIVSFTPKNR 85 (96)
T ss_dssp SSCCEEESSCCSC
T ss_pred CceEEEEecCCCc
Confidence 8999999998753
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.30 E-value=1.5e-06 Score=75.41 Aligned_cols=91 Identities=10% Similarity=0.152 Sum_probs=69.9
Q ss_pred cCchhhccCCCccceEEEecCCC--ccC---HHHHHHHHhhcCCCcCceEeecccCCC----CcceeEEEEeccChhhHH
Q 009947 350 LDLDKIISGEDTRTTLMIKNIPN--KYT---SKMLLAAIDENHRGTYDFLYLPIDFKN----KCNVGYAFINMVSPSHII 420 (522)
Q Consensus 350 ldl~rI~~G~D~RTTLMIRNIPN--KyT---q~mLl~iIDe~~~G~YDFlYLPiDFkn----kcNvGYAFVNF~spe~a~ 420 (522)
+-+.|+.+.. .-++|.|+|+-. .+. +++|++++.++ |+..-++++.|..+ ...+|+|||.|.++++|.
T Consensus 9 ~~~qkl~~~~-ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 9 MVMQKLLRKQ-ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp TTTHHHHHHH-SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHH
T ss_pred HHHHHhcCCC-CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHH
Confidence 3345665543 345788999843 333 45666666543 88889999999763 456899999999999999
Q ss_pred HHHHHhcCCccccCCCccEEEEEeecc
Q 009947 421 SFYEAFNGKKWEKFNSEKVASLAYARI 447 (522)
Q Consensus 421 ~F~~~FnGkkW~~fnS~KVc~VsYAri 447 (522)
++++.+||+.+. .+++.|.|+..
T Consensus 86 ~Ai~~LnGr~f~----GR~i~v~~~~~ 108 (118)
T 3ue2_A 86 KAIQALNGRWFA----GRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHTTCEET----TEECEEEEECH
T ss_pred HHHHHHCCCEEC----CcEEEEEEcCh
Confidence 999999999997 89999999875
No 201
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.28 E-value=2.6e-06 Score=75.01 Aligned_cols=76 Identities=21% Similarity=0.174 Sum_probs=63.4
Q ss_pred eEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeE-EEEeccChhhHHHHHHHhcCCccccCCCccEEEE
Q 009947 364 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGY-AFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 442 (522)
Q Consensus 364 TLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGY-AFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~V 442 (522)
.|-|.|||..+|+++|.++|.++ |+..-+.+.. + + || |||.|.+.++|..+++.+||+.+.. ....+.|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~y--G~V~~v~i~~--~---~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g--~~~~l~V 96 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPV--GKVQRIVIFK--R---N-GIQAMVEFESVLCAQKAKAALNGADIYA--GCCTLKI 96 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTT--SCEEEEEEEE--S---S-SEEEEEEESSHHHHHHHHHHHTTCCCBT--TBSEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhc--CCEEEEEEEe--C---C-CCEEEEEECCHHHHHHHHHHhCCCEecC--CCeEEEE
Confidence 45689999999999999999986 7887777732 2 2 85 9999999999999999999999862 2357899
Q ss_pred EeecccC
Q 009947 443 AYARIQG 449 (522)
Q Consensus 443 sYAriQG 449 (522)
.||+.+.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9998764
No 202
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.22 E-value=4e-06 Score=76.22 Aligned_cols=79 Identities=8% Similarity=-0.031 Sum_probs=68.8
Q ss_pred cceEEEecC----CCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccC----hhh----HHHHHH--Hhc
Q 009947 362 RTTLMIKNI----PNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVS----PSH----IISFYE--AFN 427 (522)
Q Consensus 362 RTTLMIRNI----PNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~s----pe~----a~~F~~--~Fn 427 (522)
-|+|.|.|| |...|++.|+++|.++ |+..-+-+..|..|+..+|||||-|.+ ++. |.++++ ..+
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~f--GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKY--GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTT--SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 379999999 9999999999999975 899999999999999999999999997 544 788888 679
Q ss_pred CCccccCCCccEEEEEeec
Q 009947 428 GKKWEKFNSEKVASLAYAR 446 (522)
Q Consensus 428 GkkW~~fnS~KVc~VsYAr 446 (522)
|..+. ...+.|.+=+
T Consensus 80 g~~I~----Gr~irV~ln~ 94 (136)
T 2j8a_A 80 GCFIM----GFKFEVILNK 94 (136)
T ss_dssp CEEET----TEEEEEEECC
T ss_pred CCeec----CcEEEEEECc
Confidence 99988 7778888754
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.16 E-value=1.7e-06 Score=72.88 Aligned_cols=73 Identities=8% Similarity=0.101 Sum_probs=58.0
Q ss_pred cCCCccCHHHHHHHHhh----------cCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCcc
Q 009947 369 NIPNKYTSKMLLAAIDE----------NHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 438 (522)
Q Consensus 369 NIPNKyTq~mLl~iIDe----------~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~K 438 (522)
++|..+|+++|.+.+++ ...|+..-+.++.|.. +...|||||.|.++++|.++++.+||+.+. .+
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----Gr 96 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFN----GQ 96 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEET----TE
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEEC----CE
Confidence 45556677777665521 1148888899988764 578999999999999999999999999987 78
Q ss_pred EEEEEeec
Q 009947 439 VASLAYAR 446 (522)
Q Consensus 439 Vc~VsYAr 446 (522)
++.|.||.
T Consensus 97 ~i~v~~sp 104 (104)
T 1jmt_A 97 PIHAELSP 104 (104)
T ss_dssp ECCEEECC
T ss_pred EEEEEEcC
Confidence 88898873
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=1.1e-05 Score=68.16 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=59.9
Q ss_pred cceEEEecCC-------CccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccC
Q 009947 362 RTTLMIKNIP-------NKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 434 (522)
Q Consensus 362 RTTLMIRNIP-------NKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~f 434 (522)
..+|.|+-.+ ..+|+++|+++|..+ |++..++|+ +...|||||.|.+.++|.++++..+|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~----- 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL----- 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC-----
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC-----
Confidence 3455555554 458999999999986 788888887 356899999999999999999985543
Q ss_pred CCccEEEEEeecccCh
Q 009947 435 NSEKVASLAYARIQGQ 450 (522)
Q Consensus 435 nS~KVc~VsYAriQGk 450 (522)
..+.+.|.||+-+..
T Consensus 78 -~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 78 -VDNPLKISWLEGQPQ 92 (100)
T ss_dssp -SSSBCEEECSSCCCC
T ss_pred -CCCeEEEEEccCCCC
Confidence 267789999987653
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.04 E-value=8e-06 Score=83.15 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=64.4
Q ss_pred CccceEEEec--CCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccC-CC
Q 009947 360 DTRTTLMIKN--IPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF-NS 436 (522)
Q Consensus 360 D~RTTLMIRN--IPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~f-nS 436 (522)
..-.+|.|.| |+..+|+++|+++|.++ |+.+-+.++. +.|||||.|.+.++|.++++++||+..-.. ..
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 4445899999 68999999999999986 7888887764 469999999999999999999999988433 22
Q ss_pred ccEEEEEee
Q 009947 437 EKVASLAYA 445 (522)
Q Consensus 437 ~KVc~VsYA 445 (522)
.+++-|+|+
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 346777787
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.86 E-value=3.9e-05 Score=66.27 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=63.4
Q ss_pred eEEEecCCCccC------HHHHHHHHhhcC--CCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCC
Q 009947 364 TLMIKNIPNKYT------SKMLLAAIDENH--RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 435 (522)
Q Consensus 364 TLMIRNIPNKyT------q~mLl~iIDe~~--~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fn 435 (522)
+|.|+|+=..-. .++|.+-|.+.| .|+..-++++.|- ..|+|||.|.++++|.++++.+||+.+.
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--- 81 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA--- 81 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET---
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 577888754433 233333333221 4788888887663 4899999999999999999999999997
Q ss_pred CccEEEEEeecccChHHHHHhhccCC
Q 009947 436 SEKVASLAYARIQGQAALVTHFQNSS 461 (522)
Q Consensus 436 S~KVc~VsYAriQGk~ALi~hFrNSs 461 (522)
.+.+.|.|+..+.. .++|..+.
T Consensus 82 -GR~i~v~~~~~~~y---~~~fp~a~ 103 (114)
T 3s6e_A 82 -GKMITAAYVPLPTY---HNLFPDSM 103 (114)
T ss_dssp -TEECEEEEECHHHH---HHHCGGGS
T ss_pred -CEEEEEEEEcHHHH---HHhCcccc
Confidence 89999999987644 45565554
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=96.84 E-value=0.0019 Score=59.30 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=55.4
Q ss_pred CHHHHHHHHhhcCCCcCceEeecccCCC----CcceeEEEEeccChhhHHHHHHHhcCCccccCCCccEEEEEeecc
Q 009947 375 TSKMLLAAIDENHRGTYDFLYLPIDFKN----KCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARI 447 (522)
Q Consensus 375 Tq~mLl~iIDe~~~G~YDFlYLPiDFkn----kcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KVc~VsYAri 447 (522)
.+++|.+.+.++ |+..-+.++.+..+ ...+|++||.|.+.++|.++++.+||+.|. .+++.+.|+..
T Consensus 142 ~~~dl~~e~~~~--G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA----GRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTT--SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEEECCH
T ss_pred HHHHHHHHHHcc--CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC----CeEEEEEEcCH
Confidence 355677777654 78888888865544 478999999999999999999999999998 88899999864
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.84 E-value=0.022 Score=50.41 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=52.4
Q ss_pred CccceEEEecCCCc-cCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccC-hhhHHHHHHHhc
Q 009947 360 DTRTTLMIKNIPNK-YTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVS-PSHIISFYEAFN 427 (522)
Q Consensus 360 D~RTTLMIRNIPNK-yTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~s-pe~a~~F~~~Fn 427 (522)
..-+-|-|.||+.. .|.++|+++|.++ |+.-|+-+..|-.+ |||-|.+ +.+|.+++++++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~--G~V~~Vd~~~g~~t------gfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGAKE------GIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTCSE------EEEEESSCHHHHHHHHHHTT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCE------EEEEECCChHHHHHHHHHhh
Confidence 44568999999999 9999999999975 78888888777664 9999999 799999999996
No 209
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.72 E-value=0.013 Score=51.19 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=60.5
Q ss_pred CCCccceEEEecCCCcc-CHHHHHHHHhhcC---CCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCcccc
Q 009947 358 GEDTRTTLMIKNIPNKY-TSKMLLAAIDENH---RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 433 (522)
Q Consensus 358 G~D~RTTLMIRNIPNKy-Tq~mLl~iIDe~~---~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~ 433 (522)
|.|.-|||.|-||+..+ +.+.|++.|++.+ ...--|-||+- ....-|||.++++|.+....+++..+.
T Consensus 1 ~s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~Lh~~~f~- 72 (104)
T 1wey_A 1 GSSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRLHKTEFL- 72 (104)
T ss_dssp CCSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTSTTSEET-
T ss_pred CCCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-------ceEEEEEeCChHHHHHHHHHhccceec-
Confidence 45788999999999866 6666655554432 12233788853 347899999999999999999999887
Q ss_pred CCCccEEEEEeec
Q 009947 434 FNSEKVASLAYAR 446 (522)
Q Consensus 434 fnS~KVc~VsYAr 446 (522)
+|.|.|.||.
T Consensus 73 ---g~~~r~YFgq 82 (104)
T 1wey_A 73 ---GKEMKLYFAQ 82 (104)
T ss_dssp ---TEECEEECCC
T ss_pred ---CceeEEEecC
Confidence 7899999998
No 210
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.55 E-value=0.032 Score=47.62 Aligned_cols=71 Identities=13% Similarity=0.232 Sum_probs=53.3
Q ss_pred ceEEEecCC-----CccCHHHHHHHHhhc-CCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 363 TTLMIKNIP-----NKYTSKMLLAAIDEN-HRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 363 TTLMIRNIP-----NKyTq~mLl~iIDe~-~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
-||+|...| +-++.+...++++.+ ..|+.--+.+..|. +||.|.+.+.|..+++ +||.+..
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~---- 74 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL---- 74 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET----
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC----
Confidence 489999887 346654444444443 24655555666654 8999999999999998 9999987
Q ss_pred ccEEEEEeec
Q 009947 437 EKVASLAYAR 446 (522)
Q Consensus 437 ~KVc~VsYAr 446 (522)
.|.+.|.+|+
T Consensus 75 Gr~LkV~lkt 84 (91)
T 2dnr_A 75 NRTITIALKS 84 (91)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 8999999886
No 211
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.98 E-value=0.11 Score=44.83 Aligned_cols=70 Identities=10% Similarity=0.203 Sum_probs=51.3
Q ss_pred cceEEEecCC------CccCHHHHHHHHhhcC-CCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccC
Q 009947 362 RTTLMIKNIP------NKYTSKMLLAAIDENH-RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 434 (522)
Q Consensus 362 RTTLMIRNIP------NKyTq~mLl~iIDe~~-~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~f 434 (522)
--||+|..++ +.++.++..++++.+. .|+.--+.+..|- +||.|.+.+.|.++++ ++|++..
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~-- 83 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK-- 83 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET--
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC--
Confidence 3499999987 3466554444544432 3655555555553 9999999999999998 9999998
Q ss_pred CCccEEEEEe
Q 009947 435 NSEKVASLAY 444 (522)
Q Consensus 435 nS~KVc~VsY 444 (522)
.+.+.|.+
T Consensus 84 --Gr~L~V~~ 91 (95)
T 1ufw_A 84 --GRAVKISG 91 (95)
T ss_dssp --TEEEEEEC
T ss_pred --CeEEEEec
Confidence 78888865
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=89.82 E-value=1.5 Score=39.13 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=63.8
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhc---CCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCC
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDEN---HRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 436 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~---~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS 436 (522)
|.-.||=|=|||-+++...+++++.+. -.|.+-=+||.-|. |=|.|-|.|...|-+..-+.+|..++
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~---- 88 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQ---- 88 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEET----
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeec----
Confidence 345689999999999999999999986 34677789999986 67999999999999999999999998
Q ss_pred ccEEEEE
Q 009947 437 EKVASLA 443 (522)
Q Consensus 437 ~KVc~Vs 443 (522)
.+++.+.
T Consensus 89 gr~Lr~g 95 (117)
T 2l9w_A 89 GKVIRSG 95 (117)
T ss_dssp TEEEEEE
T ss_pred CeEEEec
Confidence 6666665
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.60 E-value=1.9 Score=37.72 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=45.8
Q ss_pred cCCCccceEEEecCCCccCHHHHHHHHhhc---CCCcCc-eEeecccCCCCcceeEEEEeccChhhHHHHHHH
Q 009947 357 SGEDTRTTLMIKNIPNKYTSKMLLAAIDEN---HRGTYD-FLYLPIDFKNKCNVGYAFINMVSPSHIISFYEA 425 (522)
Q Consensus 357 ~G~D~RTTLMIRNIPNKyTq~mLl~iIDe~---~~G~YD-FlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~ 425 (522)
+|...+.+|.|+|||...+++.|.-.|+.. +-|... .-|+| +=|.|-|.++++|.+-.+.
T Consensus 3 ~~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 3 SGSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CSCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC
T ss_pred CCccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC
Confidence 456778999999999999988777777762 445555 34655 4689999999999876654
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=80.01 E-value=1 Score=38.74 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=23.7
Q ss_pred CCcceeEEEEeccChhhHHHHHHHhcC
Q 009947 402 NKCNVGYAFINMVSPSHIISFYEAFNG 428 (522)
Q Consensus 402 nkcNvGYAFVNF~spe~a~~F~~~FnG 428 (522)
.+...|||||.|.++++|.+.++.+++
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcc
Confidence 335789999999999999999999875
No 215
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=43.15 E-value=9.1 Score=32.71 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=32.0
Q ss_pred CcceeEEEEeccChhhHHHHHHHh-cCCccccCCCccEEEEEeecc
Q 009947 403 KCNVGYAFINMVSPSHIISFYEAF-NGKKWEKFNSEKVASLAYARI 447 (522)
Q Consensus 403 kcNvGYAFVNF~spe~a~~F~~~F-nGkkW~~fnS~KVc~VsYAri 447 (522)
..-.|+++|.|.++++|.+.++.+ ||..+. . .+.+.+|+-
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~----G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVD----G-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCC----C-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCC----C-ceecccccC
Confidence 344699999999999999999999 888776 3 566666654
No 216
>3v2a_A Vascular endothelial growth factor A; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens}
Probab=35.01 E-value=8.1 Score=34.95 Aligned_cols=16 Identities=63% Similarity=1.020 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCCCCCC
Q 009947 223 IGSHHQHHVGSAPSGV 238 (522)
Q Consensus 223 ~~~~~~hhvgSap~~~ 238 (522)
+++|||||-||||-..
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (134)
T 3v2a_A 3 FGSHHHHHHGSAPMAE 18 (134)
T ss_dssp ----------------
T ss_pred cccccccccCCCcccc
Confidence 4678999999999654
No 217
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=33.42 E-value=9.4 Score=35.22 Aligned_cols=17 Identities=59% Similarity=0.843 Sum_probs=0.5
Q ss_pred CCCCCCCCCcCCCCCCC
Q 009947 222 FIGSHHQHHVGSAPSGV 238 (522)
Q Consensus 222 ~~~~~~~hhvgSap~~~ 238 (522)
|.++|||||-|||-+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (157)
T 2qih_A 1 MRGSHHHHHHGSATSAN 17 (157)
T ss_dssp ----------------C
T ss_pred CCCcccccccccccccc
Confidence 34688999999998765
No 218
>2ls0_1 Zoocin A endopeptidase; specificity, hydrolase; NMR {Streptococcus equi subsp}
Probab=30.49 E-value=21 Score=32.24 Aligned_cols=15 Identities=60% Similarity=1.090 Sum_probs=12.6
Q ss_pred CCCCCCCCCcCCCCC
Q 009947 222 FIGSHHQHHVGSAPS 236 (522)
Q Consensus 222 ~~~~~~~hhvgSap~ 236 (522)
|.++|||||-||.|.
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (128)
T 2ls0_1 1 MRGSHHHHHHGSEPT 15 (128)
T ss_dssp CCSCCCCCCCCSCCC
T ss_pred CCccccccccCCCCC
Confidence 357899999999996
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=29.37 E-value=1.1e+02 Score=29.69 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=51.1
Q ss_pred CccceEEEecCCCccCHHHHHHHHhhcCCCcCceEeecccCCCCcceeEEEEeccChhhHHHHHHHhcCCccccCCCccE
Q 009947 360 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 439 (522)
Q Consensus 360 D~RTTLMIRNIPNKyTq~mLl~iIDe~~~G~YDFlYLPiDFknkcNvGYAFVNF~spe~a~~F~~~FnGkkW~~fnS~KV 439 (522)
..+-+|.|.+ ..||+.+.|++.|...+. ..| .|++|+...+...-|| .+...|.. ....+|+.|... ..|+
T Consensus 22 ~~w~kv~I~~-g~ky~k~~ll~~i~~~~~--~~f--~p~~~~~~~~~~~ffV--~~~~~A~~-l~~~~g~i~~~~-~~ki 92 (267)
T 3rw6_A 22 KNWFKITIPY-GRKYDKAWLLSMIQSKCS--VPF--TPIEFHYENTRAQFFV--EDASTASA-LKAVNYKILDRE-NRRI 92 (267)
T ss_dssp -CCEEEEETT-GGGSCHHHHHHHHHHTCS--SCC--CCEEEEEETTEEEEEE--SCHHHHHH-HHHTTSSCBCTT-SCBC
T ss_pred CCeEEEEecC-ccccCHHHHHHHHHHhCC--CCc--EeEEEEEeCCEEEEEe--CChHHHHH-HHhcCcEEECCC-CCEE
Confidence 4577899999 999999999999998763 333 3667765556677777 45555554 668999999744 3455
Q ss_pred E
Q 009947 440 A 440 (522)
Q Consensus 440 c 440 (522)
.
T Consensus 93 ~ 93 (267)
T 3rw6_A 93 S 93 (267)
T ss_dssp C
T ss_pred E
Confidence 3
Done!