BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009948
(522 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 11 IHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPE 70
+HLV S + +F + L + S++ D+EWKP + VSL+QLA
Sbjct: 437 VHLVDSKD--KFYAMLSDLCRQSMIAFDSEWKPTFGGAN---EVSLIQLATWDD------ 485
Query: 71 SDESNASVVFLLDLSSIPL-PSIWELL-KELFVSPDILKLGFKFKQDLIYLSSTFCSQGC 128
V+++D+ L P W L K +F D+LKL F D+ S
Sbjct: 486 --------VYMIDVMVSQLEPLDWAALAKNVFNRDDVLKLSFAPSTDISMFQKALPSFNV 537
Query: 129 DIGFDRVEPYLDITSIYNHLHHKQLGRKLPKE---TKSLANICKELLDISLSKELQCSDW 185
LD+ ++ H+ R E ++LAN+ + L L K Q S+W
Sbjct: 538 MYSSQSTSAILDLQLLWRHVERFDSFRFPYHEESVNQNLANLVRLCLGKKLDKSNQFSNW 597
Query: 186 SNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218
+ RPL +EQ YAA+DA CL+EI++ + ++
Sbjct: 598 AQRPLRKEQLRYAALDAFCLLEIYDAIEKQLTH 630
>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1
SV=3
Length = 876
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 33/225 (14%)
Query: 2 DCTYRKPL---KIHLVTSTESPEFTHLARALSQ-SSLVGLDAEWKPQRSHQSNFPRVSLL 57
D Y+ P+ +HL+ S E + T AL Q +VG+D EW P PR SLL
Sbjct: 361 DRYYQLPIPRENVHLLASWE--DLTRHEGALLQCHQVVGVDVEWTPVFV-AGGRPRPSLL 417
Query: 58 QLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWE-------LLKELFVSPDILKLGF 110
Q+A + VFLLD+ ++ P + L+ +L P I KLG+
Sbjct: 418 QVAVE--------------GHVFLLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGY 463
Query: 111 KFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQL---GRKLPKETKSLANI 167
DL L T C + ++ +D+ ++ + + +E + L+ +
Sbjct: 464 GMVGDLQKLG-TSCPALAHVE-KQILGGMDLLLVHRQMRVASVPAPAVDRARELRGLSLL 521
Query: 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIF 212
+++L +L K Q S+W RPL EEQ YAA DA+CL+E+
Sbjct: 522 VQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLEVHQAL 566
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 358 KFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKL--LRHQY 415
+ +CD M++GLA+ LRC+G+DA + R + +E R++LT LR Q
Sbjct: 631 RVVCDNMLQGLARSLRCLGVDARM-LGNGEDHRRAAEVARQEGRIILTSGQPFHKLRAQV 689
Query: 416 LIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCN 457
+ SL QQ V++ F ++++ + SRC CN
Sbjct: 690 GAGRCLSVDCSLKAQQQAKAVLKHFNVRVTHADIFSRCQACN 731
>sp|Q9VIF1|MUT7_DROME Probable exonuclease mut-7 homolog OS=Drosophila melanogaster
GN=CG9247 PE=1 SV=1
Length = 625
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 28/213 (13%)
Query: 13 LVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESD 72
L+ ++ EF + L Q ++ LD+EW + ++ +LQ+A
Sbjct: 410 LIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDN---QLCVLQIA------------ 454
Query: 73 ESNASVVFLLD-LSSIPLPS-IWELL-KELFVSPDILKLGFKFKQDLIYLSSTFCSQGCD 129
V+L+D L+ L S W LL +F + +I K+GF DL L + Q
Sbjct: 455 --TGHNVYLIDCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSLPLQ--- 509
Query: 130 IGFDRVEPYLDITSIYNHLHHKQLGRKLP-----KETKSLANICKELLDISLSKELQCSD 184
+ YLD+ +++ L ++ G +LP + +L ++ L L+K QCS+
Sbjct: 510 LRLQMPHHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSN 569
Query: 185 WSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217
W+NRPL EQ YAAIDA CL+ I+N +V+
Sbjct: 570 WANRPLRREQILYAAIDARCLMLIYNTLIERVS 602
>sp|P34607|MUT7_CAEEL Probable exonuclease mut-7 OS=Caenorhabditis elegans GN=mut-7 PE=1
SV=1
Length = 910
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 39/272 (14%)
Query: 10 KIHLVTSTESPEFTHLARALSQSS------LVGLDAEWKPQRSHQSNFPRVSLLQLACQP 63
+IH+V TES E +L + S VG D+EWKP + +++++QL +
Sbjct: 403 QIHMV-KTES-EMNYLCSEIKSLSDEPAPVYVGFDSEWKPSNLTAVHDSKIAIIQLFFK- 459
Query: 64 GPRFNPESDESNASVVFLLD---LSSIPLPSIW--ELLKELFVSPDILKLGFKFKQDLIY 118
+ V+L+D L + W + LF + +GF + DL
Sbjct: 460 -------------NCVWLVDCVELEKANMADDWWQKFASRLFGDSPVKVVGFDMRNDLDA 506
Query: 119 LSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLG-RKLPKETKSLANICKELLDISLS 177
++ T + + + + D+ + ++ + +LPK+T LA++ LL + L
Sbjct: 507 MA-TIPALKSSMKIEDTKNAFDLKRLAENVCDIDMEILELPKKTFKLADLTHYLLGLELD 565
Query: 178 KELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSISELDSSNLDLG 237
K QCS+W RPL ++Q YAA+DA ++E F V +K + SN+
Sbjct: 566 KTEQCSNWQCRPLRKKQIVYAALDAVVVVETFKKILSIVEEKNKDADIEKIVRESNV--- 622
Query: 238 LKGILEKPDIGNKTVR----FKLCEALDIIRA 265
+ K D G+K+ R E DI+R+
Sbjct: 623 ---MAPKKDKGHKSYRKLKTIPWLELYDILRS 651
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 358 KFLCDVMVEGLAKHLRCVGIDAATP--------------RSKKPEPRELIDQTSKEKRVL 403
K + D M+ G K+LR VGID P R R +I SK L
Sbjct: 666 KVIVDTMLIGFGKNLRRVGIDVILPKDVSDFRKYLKEIERVGGEHLRHIITVPSKSYEAL 725
Query: 404 LTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRF 460
K+ Y I I + ++ QL+E + F + I + + RCT+CN R
Sbjct: 726 -----KMDYDNYTI--AIPELNNMSPVDQLIEFFDLFNVDIRPEDVYPRCTECNSRL 775
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 35/193 (18%)
Query: 25 LARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDL 84
++ +LS +VG D EW P ++ +V+L+QL ES + + +
Sbjct: 69 ISMSLSDGDVVGFDMEWPPLY-NRGKLGKVALIQLCVS----------ESKCYLFHVSSM 117
Query: 85 SSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSI 144
S P + LK L + + K G + D L F DI +++ ++++T +
Sbjct: 118 SVFP-----QGLKMLLENKAVKKAGVGIEGDQWKLLRDF-----DI---KLKNFVELTDV 164
Query: 145 YNHLHHKQLGRKLP-KETKSLANICKELLDISL--SKELQCSDWSNRPLTEEQKNYAAID 201
N +KL ET SL ++ K LL L K ++CS+WS PLTE+QK YAA D
Sbjct: 165 AN--------KKLKCTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATD 216
Query: 202 AHCLIEIFNIFQV 214
A+ I+ ++
Sbjct: 217 AYAGFIIYRNLEI 229
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 45/193 (23%)
Query: 25 LARALSQSSLVGLDAEWKP-----QRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVV 79
++ LS +VG D EW P +RS RV+++QL ES +
Sbjct: 63 ISMRLSDGDVVGFDMEWPPIYKPGKRS------RVAVIQLCV----------SESKCYLF 106
Query: 80 FLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYL 139
+ +S P + LK L + I K G + D L F D+ ++E ++
Sbjct: 107 HISSMSVFP-----QGLKMLLENKSIKKAGVGIEGDQWKLLRDF-----DV---KLESFV 153
Query: 140 DITSIYNHLHHKQLGRKLP-KETKSLANICKELLDISL--SKELQCSDWSNRPLTEEQKN 196
++T + N KL ET SL + K +L L K ++CS+WSN PLTE+QK
Sbjct: 154 ELTDVANE--------KLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKL 205
Query: 197 YAAIDAHCLIEIF 209
YAA DA+ + I+
Sbjct: 206 YAATDAYAGLIIY 218
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 95 LLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLH-HKQL 153
+L E+F +P I+K+ D+I+L D+G L + +++ H K +
Sbjct: 276 ILNEVFTNPSIVKVFHGAFMDIIWLQR-------DLG-------LYVVGLFDTYHASKAI 321
Query: 154 GRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQ 213
G LP+ SLA + + + SK+ Q +DW RPL++ YA D H L+ I++ +
Sbjct: 322 G--LPRH--SLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLR 377
Query: 214 VKVAQKG 220
K+ +
Sbjct: 378 NKLIESN 384
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 124 CSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCS 183
CS+ ++ F R+ L + L LG + + + KE+LDI L K+ S
Sbjct: 87 CSEDLEV-FLRLTGSLPVPLFDTQLAAAYLGMA---HSMGYSKLVKEVLDIDLPKDETRS 142
Query: 184 DWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222
DW RPLTE Q YAA D L +++ +++++ +
Sbjct: 143 DWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRA 181
>sp|P34603|YO63_CAEEL Uncharacterized protein ZK1098.3 OS=Caenorhabditis elegans
GN=ZK1098.3 PE=4 SV=2
Length = 784
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 13/177 (7%)
Query: 35 VGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIW- 93
+G D+E+KP + R++++QL + + V + +L+S +W
Sbjct: 447 IGYDSEFKPYHLIDVSTSRLAIIQLFFKDKAWL--------INCVAIDNLAS--RDDVWI 496
Query: 94 ELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQL 153
L K LF S +GF +QD I T S + + ++ + + S+ +++ +
Sbjct: 497 RLYKGLFESNKFSIVGFDIRQD-IEAMFTVPSINKNFKIENIQNVICVKSLAENVNALSM 555
Query: 154 G-RKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIF 209
L +T L+ + L+ + + K QC +W RPL Q YA +DA + E+F
Sbjct: 556 DILNLSTKTSKLSVLADHLVGLKMDKSEQCGNWQCRPLRRNQIIYAVMDAVAVFEVF 612
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1
Length = 386
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 43/212 (20%)
Query: 12 HLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPES 71
H +T+T+ + ARA +Q V +D E+ +R++ F ++ L+Q+A P +
Sbjct: 3 HTITTTDELA-AYCARAATQP-YVTVDTEFLRERTY---FAQLCLVQVAM-------PGT 50
Query: 72 DESNASVVFLLDLSSIPLPSIWEL--LKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCD 129
D+++A L+D PL L L ELF + +++K+ +QDL +
Sbjct: 51 DDTDA---VLID----PLAEGLSLEPLYELFRNVNVVKVFHAARQDL------------E 91
Query: 130 IGFDRVEPYLDITSIYNHLHHKQL---GRKLPKETKSLANICKELLDISLSKELQCSDWS 186
I F VE L T +++ + G ++ ET + + + +L K + +DWS
Sbjct: 92 IFF--VEGGLVPTPLFDTQVAAMVCGFGDQVGYET-----LVRRIAKANLDKSSRFTDWS 144
Query: 187 NRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218
RPL++ QK YA D L EI+ ++A+
Sbjct: 145 RRPLSDAQKVYALADVTYLREIYEYLSAELAR 176
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 80 FLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYL 139
F++D ++ L S +L E P I+K+ D+ +L F
Sbjct: 338 FIID--TLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG--------------- 380
Query: 140 DITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAA 199
+ N Q R L SL ++ K ++ +K+ Q +DW RPL EE +YA
Sbjct: 381 --LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYAR 438
Query: 200 IDAHCLIEIFNIFQVKVAQKGNS 222
D H L+ I++ ++++ ++GN
Sbjct: 439 DDTHYLLYIYDKMRLEMWERGNG 461
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 80 FLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYL 139
F++D ++ L S +L E P I+K+ D+ +L F
Sbjct: 338 FIVD--TLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG--------------- 380
Query: 140 DITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAA 199
+ N Q R L SL ++ + + +K+ Q +DW RPL EE +YA
Sbjct: 381 --LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYAR 438
Query: 200 IDAHCLIEIFNIFQVKVAQKGN 221
D H L+ I++ ++++ ++GN
Sbjct: 439 DDTHYLLYIYDRMRLELWERGN 460
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 57/220 (25%)
Query: 11 IHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPE 70
+ L+T+TE+ + + L+ + V +D E+ + + +P++ ++QLA
Sbjct: 1 MSLITTTEA--LAEVCQRLASHAFVTVDTEFLRETTF---WPKLCVVQLAS--------- 46
Query: 71 SDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDL--------IYLSST 122
+DE+ A L PL EL P ++K+ +QDL I +
Sbjct: 47 ADEAVAVDALASGLDLAPL-------FELMADPAVVKVFHAARQDLEIVWNLAKIIPAPL 99
Query: 123 FCSQGCDI--GFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKEL 180
F +Q + GF Y D+ +CK +SL K
Sbjct: 100 FDTQVAAMVCGFGDQVSYGDLVQ----------------------TVCK----VSLDKSS 133
Query: 181 QCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKG 220
+ +DWS RPL Q +YA D L +I+ I Q K+ + G
Sbjct: 134 RFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKETG 173
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 53/217 (24%)
Query: 13 LVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESD 72
L+T+TE + T + L + V +D E+ +R++ +P + L+QLA Q D
Sbjct: 14 LITTTE--DLTGVVERLRREPFVSIDTEFVRERTY---WPELCLVQLAGQ---------D 59
Query: 73 ESNASVVFLLDLS-SIPLPSIWELLKELFVSPDILKLGFKFKQDL-IYLSSTFCSQGCDI 130
E VV + L+ I L + LL + P+++K+ +QDL I+L
Sbjct: 60 E----VVVVDTLAPGIDLAPLGVLLDD----PEVVKVFHAARQDLEIFL----------- 100
Query: 131 GFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLA------NICKELLDISLSKELQCSD 184
YL + HL ++ N+ L + K + SD
Sbjct: 101 -------YL-----FGHLPAALFDTQVAAMVAGFGDQVGYDNLVASLTGAHIDKAHRFSD 148
Query: 185 WSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221
WS RPL+E Q YAA D L ++ + ++ ++G
Sbjct: 149 WSARPLSEAQIAYAAADVTHLRTVYQLLLERLEREGR 185
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 26/139 (18%)
Query: 71 SDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDI 130
DE N V+ L ++ I E L++L I+ KF +Y F S D
Sbjct: 42 GDEENTYVIDLYEIQDI------EPLRKLINERGIVGHNLKFDLKYLYRYGIFPSATFD- 94
Query: 131 GFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPL 190
T I ++L L E SL +I LL S+ K Q SDW L
Sbjct: 95 -----------TMIASYL--------LGYERHSLNHIVSNLLGYSMDKSYQTSDWGASVL 135
Query: 191 TEEQKNYAAIDAHCLIEIF 209
++ Q YAA D L E+F
Sbjct: 136 SDAQLKYAANDVIVLRELF 154
>sp|Q5NPM2|RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnd PE=3 SV=1
Length = 390
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 41/218 (18%)
Query: 9 LKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFN 68
++IH + T+S L LS++ + +D E+ + S+ +P + L+Q+A
Sbjct: 1 MQIHPLI-TDSATLAALCSRLSRADFIAIDTEFIRENSY---WPELCLIQIA-------- 48
Query: 69 PESDESNASVVFLL--DLSSIPLPSIWELLKELFVSPDILKLGFKFKQDL-IYLSSTFCS 125
D+ A+ + L L PL + L + DILK+ QDL I L T
Sbjct: 49 ---DDKEAAAIDPLAPGLDMTPLTDL------LVNNEDILKVFHAGGQDLEIILHHT--- 96
Query: 126 QGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDW 185
+ F P D + LG E +N+ + L I L K + +DW
Sbjct: 97 --GKMPF----PLFD-----TQIAAMALG---VGEQVGYSNLVERYLSIKLDKGARFTDW 142
Query: 186 SNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSC 223
S+RPL Q +YA D L +F + ++ KG
Sbjct: 143 SHRPLDRRQLDYAIADVTHLATLFPMLLKELRDKGRGA 180
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 38/208 (18%)
Query: 12 HLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPES 71
H T++ + Q S V LD E+ ++ FP++ L+QL
Sbjct: 29 HFRVVTDNTALLEVCNLAQQKSAVALDTEFMRVSTY---FPKLGLIQL-----------Y 74
Query: 72 DESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIG 131
D + S++ L ++ P + L +P +LK+ +DL+ F +
Sbjct: 75 DGEHVSLIDPLAITDFS-PFV-----ALLANPKVLKILHSCSEDLL----VFLQE----- 119
Query: 132 FDRV-EPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPL 190
FD++ P +D + L LG + LA + ++ L++ + K ++W RPL
Sbjct: 120 FDQLPRPMIDTQIMARFLG---LG-----TSAGLAKLAQQYLNVEIDKGATRTNWIKRPL 171
Query: 191 TEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218
++ Q YAA D L+ +++I + ++A+
Sbjct: 172 SDIQLQYAAGDVWYLLPLYHILEKELAK 199
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 35 VGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWE 94
+ LD E+ R++ +P++ L+QL D N +++ L ++ W
Sbjct: 21 LALDTEFVRTRTY---YPQLGLIQL-----------YDGENVALIDPLTITE------WA 60
Query: 95 LLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLG 154
+ L +I K +DL + F +P++D + + + H
Sbjct: 61 PFQALLQDQNITKFLHAGSEDLEVFQNAFGMMP--------DPFIDTQVLASFVGHPL-- 110
Query: 155 RKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214
+ A + + ++L K +DW RPLTE Q +YAA D L+ I +
Sbjct: 111 ------SCGFATLVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLME 164
Query: 215 KVAQKGNSCSSISE 228
+V + G ++I+E
Sbjct: 165 QVREAGWLTAAINE 178
>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX
PE=1 SV=1
Length = 288
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 35/190 (18%)
Query: 27 RALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS 86
R S + VGLD EW+P +V+ +Q+ +SN V + S
Sbjct: 122 RDESGIAFVGLDIEWRPSFRKGVLPGKVATVQICV-----------DSNYCDVMHIFHSG 170
Query: 87 IPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYN 146
IP + L+ L ++K+G D + L F G I D+ + +
Sbjct: 171 IP-----QSLQHLIEDSTLVKVGIGIDGDSVKL---FHDYGVSIK--------DVEDLSD 214
Query: 147 HLHHKQLGRK---LPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAH 203
+ K G K L T++L +CKELL ++ +W PL+++Q YAA DA+
Sbjct: 215 LANQKIGGDKKWGLASLTETL--VCKELLK---PNRIRLGNWEFYPLSKQQLQYAATDAY 269
Query: 204 CLIEIFNIFQ 213
++ + +
Sbjct: 270 ASWHLYKVLK 279
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 99 LFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLP 158
+F +P+I+K+ D+I+L F L + ++++ + ++ L
Sbjct: 285 VFTNPNIIKVFHGATMDIIWLQRDFG--------------LYVVNLFDTYYATKV---LG 327
Query: 159 KETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFN 210
E LA + ++ D K Q +DW RPL E YA D H L+ I++
Sbjct: 328 FEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWD 379
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 40/201 (19%)
Query: 9 LKIHLVTSTES-PEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRF 67
+ L+T+ + E AR + Q V LD E+ R++ +P++ L+QL F
Sbjct: 1 MNYQLITTDDGLSEVCSQARRMPQ---VALDTEFVRTRTY---YPQLGLIQL-------F 47
Query: 68 NPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQG 127
+ E + L+D SI ++W+ +L + P + K +DL + F
Sbjct: 48 DGER-------LSLIDPLSI---TVWQPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLP 97
Query: 128 CDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSN 187
P++D + L G+ L + A + + + ++L K +DW
Sbjct: 98 T--------PFVDTQILVAFL-----GKPL---SYGFAALVADYMQVTLDKSESRTDWLA 141
Query: 188 RPLTEEQKNYAAIDAHCLIEI 208
RPL+E+Q YAA D + L+ +
Sbjct: 142 RPLSEKQCQYAAADVYYLLPM 162
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 39.7 bits (91), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 38/220 (17%)
Query: 9 LKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFN 68
+ ++T+ ++ L A+ + LD E+ R++ +P++ L+QL F+
Sbjct: 1 MNYQMITTDDA--LASLCEAVRAFPAIALDTEFVRTRTY---YPQLGLIQL-------FD 48
Query: 69 PESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGC 128
E + L+D I + W LK + P I K +DL + F
Sbjct: 49 GEH-------LALIDPLGI---TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFG---- 94
Query: 129 DIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNR 188
+ +P +D T I GR + + A++ +E ++L K +DW R
Sbjct: 95 ----ELPQPLID-TQILAAF----CGRPM---SWGFASMVEEYSGVTLDKSESRTDWLAR 142
Query: 189 PLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSISE 228
PLTE Q YAA D L+ I V+ G +++ E
Sbjct: 143 PLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182
>sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R431 PE=4 SV=1
Length = 399
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 96 LKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGR 155
L ++F I+K+G D L F + ++++ LD++ ++ + +
Sbjct: 178 LNKVFFDESIIKVGVAIDIDAKKLLQYFPT------INQIKKTLDLSDLFKQTNFTKHIS 231
Query: 156 KLPKETKSLANICKELLDISLSK----ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNI 211
PKE+ L + +LD+ + E++ S+W+N LT +Q YA D++ + I+N
Sbjct: 232 INPKESIGLKILAAHVLDLYIENKGDSEIKKSNWNNPVLTSDQVKYAITDSYLSLMIYNE 291
Query: 212 FQV 214
Q+
Sbjct: 292 LQL 294
>sp|D4Z694|RND_SPHJU Ribonuclease D OS=Sphingobium japonicum (strain NBRC 101211 /
UT26S) GN=rnd PE=3 SV=2
Length = 388
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 160 ETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIF 209
E N+ L + L K + +DW+ RPL + Q +YA D LI+IF
Sbjct: 117 EQIGYGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIF 166
>sp|Q6AJF4|RND_DESPS Ribonuclease D OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnd PE=3 SV=1
Length = 374
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 39/173 (22%)
Query: 35 VGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASV--VFLLDLSSIPLPSI 92
VGLD E+ +R++ +P++ L+Q+A SDE ++ + + DLS
Sbjct: 26 VGLDTEFVWERTY---YPQLGLIQIAL---------SDEECYAIDPLSIKDLSP------ 67
Query: 93 WELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQ 152
L EL + +K+ QDLI +S + +I R+
Sbjct: 68 ---LGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAA--------------- 109
Query: 153 LGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCL 205
G T SL + E L+ L K ++W RPLTE+Q +Y+ D L
Sbjct: 110 -GFAGSISTISLLQLVSEQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYL 161
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 163 SLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222
A + E +++ L K +DW RPLTE+Q YAA D L+ + + + G +
Sbjct: 117 GFATLVAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQETEEAGWT 176
Query: 223 CSSISE 228
++ +E
Sbjct: 177 AAASNE 182
>sp|Q8VEG4|EXD2_MOUSE Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus
GN=Exd2 PE=2 SV=1
Length = 496
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 163 SLANICKELLDISLSKEL--QCSDWSNRPLTEEQKNYAAIDAHCLIEIF 209
SL ++ + +L+ L K L +CS+W LTE+Q YAA DA + +F
Sbjct: 81 SLKSLAETILNFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALF 129
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
GN=EXD2 PE=1 SV=2
Length = 621
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 163 SLANICKELLDISLSKEL--QCSDWSNRPLTEEQKNYAAIDAHCLIEIF 209
SL ++ + +L+ L K L +CS+W LTE+Q YAA DA + +F
Sbjct: 206 SLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALF 254
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 178 KELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222
K + +DWS RPLT++Q YA D L ++F + ++G
Sbjct: 131 KTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAALDADLKKRGRG 175
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 35.8 bits (81), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 13 LVTSTESPEFTHLAR----ALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFN 68
+V S ES + + L+ +L + ++G D EW P + + +V+L+Q+
Sbjct: 47 IVYSYESNDCSLLSEDIRSSLLEEDVLGFDIEWPPVYT-KGKTGKVALIQVCV------- 98
Query: 69 PESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGC 128
+ +L +S P+ + LK L + K+G + D L S +
Sbjct: 99 ------SEKKCYLFHIS--PMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYEL--- 147
Query: 129 DIGFDRVEPYLDITSIYNHLHHKQLGRKLP-KETKSLANICKELLDISL--SKELQCSDW 185
+++ +++++ + N +KL KE + + K L L K +CS+W
Sbjct: 148 -----KLKGFIELSEMAN--------QKLRCKEKWTFNGLIKHLFKEQLYKRKSYRCSNW 194
Query: 186 SNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222
LTE+QK YAA DA+ + I+ + A + +S
Sbjct: 195 DIFLLTEDQKLYAATDAYAGLLIYKKLEGMDAHESDS 231
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 176 LSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKG 220
+ K + SDWS RPL++ Q +YAA D L ++ + ++ ++G
Sbjct: 140 IDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEG 184
>sp|Q4L9R5|PGCA_STAHJ Phosphoglucomutase OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=pgcA PE=3 SV=1
Length = 548
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 32 SSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRF------NPESDESNASVVFLLDLS 85
+SL G P NF VSL++L C+ P F NPE E+ DL+
Sbjct: 220 TSLHGTGVPIIPDVLKHLNFQNVSLVELQCELDPNFSSVKSANPEEREA-------FDLA 272
Query: 86 SIPLPSIWELLKELFVS--PDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITS 143
+ +L L ++ PD+ ++GF ++D T+ G +IG ++ L+ T+
Sbjct: 273 ---IQQAHDLEANLIIATDPDVDRMGF-VERDT--NGQTYYFGGSEIGALLIKYLLEYTN 326
Query: 144 IYNH------LHHKQLGRKLPKE 160
+ NH + +LG++L ++
Sbjct: 327 VPNHSVVIQSIVSGELGKRLAQQ 349
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM
13023 / NCIMB 13966) GN=rnd PE=3 SV=2
Length = 384
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 166 NICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIF 212
+ ++L S+ K + +DWS RPL+++Q YA D L I+ +
Sbjct: 119 TLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVL 165
>sp|Q9URY9|YI06_SCHPO Uncharacterized hemerythrin-like protein C869.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC869.06c PE=3 SV=1
Length = 203
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 412 RHQY-LIKNQIYRVKSLLKNQQ-----LLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPL 465
RH++ L+K +Y+ +S+ NQ L E++E+ Q I E++ + + F++K L
Sbjct: 95 RHEHQLVKEMLYKFQSMKANQSNFIPALDELMESLQKHIDEEE------QHDIPFLEKHL 148
Query: 466 STEEAVEAAKGFQR 479
S EE++ A F+R
Sbjct: 149 SEEESLHMASSFER 162
>sp|P40851|AXL1_YEAST Putative protease AXL1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=AXL1 PE=1 SV=2
Length = 1208
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 400 KRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGR 459
KR+ +LL Y++ I + + LK Q L++++ +F + SED M C+K +G
Sbjct: 401 KRITTIVLNRLLPSFYVM--NIDYLITFLKEQNLIDLV-SFLYQSSEDLPMEECSKLSG- 456
Query: 460 FIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEG--TQYHNAVQKFID 516
+Q L KGF+ + + + D N++ ++ N +W G ++ N ++ F++
Sbjct: 457 ILQDDLECLTPPNIFKGFKSLIE-IDDPNIEKYENTKANIQWWTGQAIKFQNFLKSFMN 514
>sp|Q2SRR6|KCY_MYCCT Cytidylate kinase OS=Mycoplasma capricolum subsp. capricolum
(strain California kid / ATCC 27343 / NCTC 10154) GN=cmk
PE=3 SV=1
Length = 222
Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 396 TSKEKRVLLTRDAKLLRHQYLIKNQIYRVKS---LLKN------QQLLEVIEAFQLKISE 446
+S K V+ + A++L +Q++ +YR + L KN Q+++++++F KIS
Sbjct: 12 SSSGKSVIFKKVARILNYQFVDTGLMYRAFTWYCLSKNIDINNQNQIIKLLDSFDYKISN 71
Query: 447 DQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIP 481
DQ+ T + L++ E + A IP
Sbjct: 72 DQVFVNNTNVTNK-----LTSSEILNAINKITIIP 101
>sp|Q6FEP7|CLPX_ACIAD ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Acinetobacter sp. (strain ADP1) GN=clpX PE=3 SV=1
Length = 436
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 165 ANICKELLDISL-----SKELQCSDWSNRPLTEEQKNYAAIDAHCL----------IEIF 209
A IC E +D+ L S++++ DW++R L + + AA+D + + + ++
Sbjct: 30 AYICNECVDVCLDLVQTSQQVEAGDWASRDLPKPHEIRAALDQYVIGQDLAKKTLSVAVY 89
Query: 210 NIFQ-VKVAQKGNSCSSISELDSSNL 234
N ++ +K Q G+ E+ SN+
Sbjct: 90 NHYKRLKAGQSGHVSKHEVEIAKSNI 115
>sp|B0V4T7|CLPX_ACIBY ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Acinetobacter baumannii (strain AYE) GN=clpX PE=3
SV=1
Length = 437
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 165 ANICKELLDISL-----SKELQCSDWSNRPLTEEQKNYAAIDAHCL----------IEIF 209
A IC E +D+ L S++++ DW+++ L + + AA+D + + + ++
Sbjct: 30 AYICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALDQYVIGQDLAKKTLSVAVY 89
Query: 210 NIFQ-VKVAQKGNSCSSISELDSSNLDLGLKG 240
N ++ +KV Q G+ + S+ L +G G
Sbjct: 90 NHYKRLKVGQSGHVSKDVEIAKSNILLIGPTG 121
>sp|A3M1Y8|CLPX_ACIBT ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC
755) GN=clpX PE=3 SV=2
Length = 437
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 165 ANICKELLDISL-----SKELQCSDWSNRPLTEEQKNYAAIDAHCL----------IEIF 209
A IC E +D+ L S++++ DW+++ L + + AA+D + + + ++
Sbjct: 30 AYICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALDQYVIGQDLAKKTLSVAVY 89
Query: 210 NIFQ-VKVAQKGNSCSSISELDSSNLDLGLKG 240
N ++ +KV Q G+ + S+ L +G G
Sbjct: 90 NHYKRLKVGQSGHVSKDVEIAKSNILLIGPTG 121
>sp|B0VKU4|CLPX_ACIBS ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Acinetobacter baumannii (strain SDF) GN=clpX PE=3
SV=1
Length = 437
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 165 ANICKELLDISL-----SKELQCSDWSNRPLTEEQKNYAAIDAHCL----------IEIF 209
A IC E +D+ L S++++ DW+++ L + + AA+D + + + ++
Sbjct: 30 AYICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALDQYVIGQDLAKKTLSVAVY 89
Query: 210 NIFQ-VKVAQKGNSCSSISELDSSNLDLGLKG 240
N ++ +KV Q G+ + S+ L +G G
Sbjct: 90 NHYKRLKVGQSGHVSKDVEIAKSNILLIGPTG 121
>sp|B2I3C2|CLPX_ACIBC ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Acinetobacter baumannii (strain ACICU) GN=clpX PE=3
SV=1
Length = 437
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 165 ANICKELLDISL-----SKELQCSDWSNRPLTEEQKNYAAIDAHCL----------IEIF 209
A IC E +D+ L S++++ DW+++ L + + AA+D + + + ++
Sbjct: 30 AYICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALDQYVIGQDLAKKTLSVAVY 89
Query: 210 NIFQ-VKVAQKGNSCSSISELDSSNLDLGLKG 240
N ++ +KV Q G+ + S+ L +G G
Sbjct: 90 NHYKRLKVGQSGHVSKDVEIAKSNILLIGPTG 121
>sp|B7I5E4|CLPX_ACIB5 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Acinetobacter baumannii (strain AB0057) GN=clpX PE=3
SV=1
Length = 437
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 165 ANICKELLDISL-----SKELQCSDWSNRPLTEEQKNYAAIDAHCL----------IEIF 209
A IC E +D+ L S++++ DW+++ L + + AA+D + + + ++
Sbjct: 30 AYICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALDQYVIGQDLAKKTLSVAVY 89
Query: 210 NIFQ-VKVAQKGNSCSSISELDSSNLDLGLKG 240
N ++ +KV Q G+ + S+ L +G G
Sbjct: 90 NHYKRLKVGQSGHVSKDVEIAKSNILLIGPTG 121
>sp|B7H092|CLPX_ACIB3 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Acinetobacter baumannii (strain AB307-0294) GN=clpX
PE=3 SV=1
Length = 437
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 165 ANICKELLDISL-----SKELQCSDWSNRPLTEEQKNYAAIDAHCL----------IEIF 209
A IC E +D+ L S++++ DW+++ L + + AA+D + + + ++
Sbjct: 30 AYICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALDQYVIGQDLAKKTLSVAVY 89
Query: 210 NIFQ-VKVAQKGNSCSSISELDSSNLDLGLKG 240
N ++ +KV Q G+ + S+ L +G G
Sbjct: 90 NHYKRLKVGQSGHVSKDVEIAKSNILLIGPTG 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,311,826
Number of Sequences: 539616
Number of extensions: 8154568
Number of successful extensions: 19325
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 19271
Number of HSP's gapped (non-prelim): 65
length of query: 522
length of database: 191,569,459
effective HSP length: 122
effective length of query: 400
effective length of database: 125,736,307
effective search space: 50294522800
effective search space used: 50294522800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)