Query 009948
Match_columns 522
No_of_seqs 397 out of 1407
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 99.9 7.3E-27 2.5E-31 247.2 22.4 176 8-221 107-282 (428)
2 2e6m_A Werner syndrome ATP-dep 99.9 4E-26 1.4E-30 219.5 18.1 184 6-222 12-201 (208)
3 1vk0_A Hypothetical protein; h 99.9 2E-26 6.9E-31 221.6 14.7 166 20-214 28-205 (206)
4 2hbj_A Exosome complex exonucl 99.9 5.3E-25 1.8E-29 232.7 22.5 175 10-222 86-260 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.9 5.3E-25 1.8E-29 230.4 20.7 215 10-267 2-221 (375)
6 3cym_A Uncharacterized protein 99.9 1.8E-22 6.2E-27 215.0 18.7 216 11-268 18-242 (440)
7 2kfn_A Klenow fragment of DNA 99.7 7E-16 2.4E-20 170.6 19.2 180 8-221 4-199 (605)
8 3pv8_A DNA polymerase I; DNA p 99.6 7E-15 2.4E-19 161.5 14.2 156 32-222 29-187 (592)
9 1x9m_A DNA polymerase; DNA plo 99.3 8E-13 2.7E-17 148.4 8.4 154 34-221 1-188 (698)
10 4dfk_A DNA polymerase I, therm 98.8 5.1E-09 1.8E-13 113.8 7.8 123 33-221 11-134 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.2 1.7E-05 5.9E-10 76.8 13.2 166 19-222 24-227 (235)
12 1bgx_T TAQ DNA polymerase; DNA 97.8 3.3E-05 1.1E-09 88.0 8.3 121 33-221 305-426 (832)
13 2p1j_A POLIII, DNA polymerase 97.3 0.0015 5.2E-08 60.6 11.6 100 91-220 81-180 (186)
14 1wlj_A Interferon stimulated g 97.3 0.0032 1.1E-07 58.7 13.4 100 91-221 72-174 (189)
15 2f96_A Ribonuclease T; RNAse, 96.7 0.019 6.6E-07 54.6 13.1 92 104-222 126-219 (224)
16 1y97_A Three prime repair exon 95.4 0.062 2.1E-06 51.4 9.8 110 91-218 98-212 (238)
17 3mxm_B Three prime repair exon 95.1 0.073 2.5E-06 51.5 9.2 110 91-217 103-216 (242)
18 2qxf_A Exodeoxyribonuclease I; 94.7 0.48 1.6E-05 50.5 15.0 106 91-215 83-200 (482)
19 2gui_A DNA polymerase III epsi 94.6 0.11 3.7E-06 48.1 8.7 99 91-214 84-183 (194)
20 3u3y_B Three prime repair exon 94.1 0.2 6.9E-06 50.4 9.8 110 91-217 103-216 (314)
21 1w0h_A 3'-5' exonuclease ERI1; 91.9 0.54 1.8E-05 43.5 8.8 100 92-214 88-193 (204)
22 2lcq_A Putative toxin VAPC6; P 90.0 0.28 9.5E-06 44.4 4.6 28 388-415 85-112 (165)
23 1qht_A Protein (DNA polymerase 87.4 7.2 0.00025 43.9 14.9 162 32-214 135-328 (775)
24 1zbh_A 3'-5' exonuclease ERI1; 86.6 2.7 9.3E-05 41.6 9.7 101 91-214 155-261 (299)
25 3j20_Y 30S ribosomal protein S 86.1 0.53 1.8E-05 34.1 3.0 15 489-503 35-49 (50)
26 1zbu_A ERI-1 homolog, 3'-5' ex 84.8 3.7 0.00013 41.7 9.8 101 91-214 205-311 (349)
27 1s5j_A DNA polymerase I; repli 84.2 18 0.00061 41.1 16.1 159 31-210 189-387 (847)
28 1noy_A Protein (DNA polymerase 83.2 8.6 0.0003 39.4 12.0 113 91-212 193-335 (388)
29 2igi_A Oligoribonuclease; RNAs 83.1 25 0.00085 31.3 14.0 33 91-123 83-119 (180)
30 3na7_A HP0958; flagellar bioge 81.4 0.62 2.1E-05 45.3 2.3 42 451-509 199-240 (256)
31 2pk7_A Uncharacterized protein 79.7 1.2 4E-05 34.5 2.9 28 451-501 9-36 (69)
32 2jr6_A UPF0434 protein NMA0874 78.9 1.3 4.3E-05 34.3 2.8 28 451-501 9-36 (68)
33 2hf1_A Tetraacyldisaccharide-1 78.8 1.2 4.2E-05 34.3 2.7 28 451-501 9-36 (68)
34 3iay_A DNA polymerase delta ca 77.9 15 0.00051 42.2 12.6 114 91-213 315-466 (919)
35 2js4_A UPF0434 protein BB2007; 77.2 1.3 4.4E-05 34.4 2.5 28 451-501 9-36 (70)
36 4rxn_A Rubredoxin; electron tr 75.5 1.1 3.9E-05 32.9 1.6 40 451-499 4-44 (54)
37 4gmj_B CCR4-NOT transcription 74.4 66 0.0023 31.5 14.6 94 100-219 146-248 (285)
38 3ga8_A HTH-type transcriptiona 74.1 1.9 6.6E-05 33.8 2.8 29 489-517 34-62 (78)
39 3cg7_A CRN-4, cell death-relat 70.5 4 0.00014 40.6 4.9 102 92-214 98-207 (308)
40 3k59_A POL II, DNA polymerase 69.5 22 0.00076 40.0 11.1 153 31-212 152-349 (786)
41 2jny_A Uncharacterized BCR; st 67.9 3.3 0.00011 31.8 2.7 28 451-501 11-38 (67)
42 1e8j_A Rubredoxin; iron-sulfur 67.3 2.8 9.7E-05 30.5 2.2 40 451-499 4-44 (52)
43 2k4x_A 30S ribosomal protein S 66.1 3.7 0.00013 30.2 2.6 18 489-506 34-51 (55)
44 1pft_A TFIIB, PFTFIIBN; N-term 65.3 3.9 0.00013 29.1 2.6 13 490-502 23-35 (50)
45 2kn9_A Rubredoxin; metalloprot 64.0 2 6.9E-05 34.3 0.9 40 451-499 28-68 (81)
46 1dxg_A Desulforedoxin; non-hem 63.4 3.3 0.00011 27.6 1.8 14 488-501 3-16 (36)
47 2gbz_A Oligoribonuclease; ORN, 63.4 15 0.0005 33.6 6.9 33 91-123 87-123 (194)
48 2xri_A ERI1 exoribonuclease 3; 62.9 11 0.00038 35.3 6.1 97 91-213 106-211 (224)
49 1yk4_A Rubredoxin, RD; electro 62.6 3 0.0001 30.4 1.5 39 452-499 4-43 (52)
50 2v0c_A Aminoacyl-tRNA syntheta 62.1 7.7 0.00026 44.3 5.6 34 367-400 61-94 (878)
51 1dx8_A Rubredoxin; electron tr 61.3 3.1 0.00011 32.3 1.5 40 451-499 8-48 (70)
52 2kvh_A Zinc finger and BTB dom 60.7 3.7 0.00013 23.8 1.5 19 491-509 3-21 (27)
53 2v3b_B Rubredoxin 2, rubredoxi 59.9 2.8 9.4E-05 30.9 0.9 40 451-499 4-44 (55)
54 1rik_A E6APC1 peptide; E6-bind 59.9 4.7 0.00016 23.5 1.9 18 492-509 3-20 (29)
55 1s24_A Rubredoxin 2; electron 59.3 2.8 9.5E-05 33.9 0.9 40 451-499 36-76 (87)
56 1x0t_A Ribonuclease P protein 57.9 15 0.0005 31.4 5.3 59 431-501 46-104 (120)
57 2lvu_A Zinc finger and BTB dom 62.0 2.2 7.5E-05 24.6 0.0 18 492-509 3-20 (26)
58 3tqo_A Cysteinyl-tRNA syntheta 56.8 5.1 0.00017 42.3 2.7 35 367-401 52-86 (462)
59 1vq8_Z 50S ribosomal protein L 56.6 4.2 0.00014 32.6 1.6 15 490-504 44-58 (83)
60 2kvg_A Zinc finger and BTB dom 56.6 4.5 0.00016 23.5 1.4 17 492-508 4-20 (27)
61 4arc_A Leucine--tRNA ligase; l 56.6 5.2 0.00018 45.7 2.9 34 367-400 81-114 (880)
62 2k3r_A Ribonuclease P protein 56.3 17 0.00058 31.2 5.5 60 430-501 40-99 (123)
63 2kvf_A Zinc finger and BTB dom 55.8 5 0.00017 23.3 1.5 18 492-509 4-21 (28)
64 2m0e_A Zinc finger and BTB dom 55.0 4.3 0.00015 23.5 1.1 18 492-509 3-20 (29)
65 2els_A Zinc finger protein 406 53.5 5.4 0.00019 24.9 1.5 20 490-509 8-27 (36)
66 1ard_A Yeast transcription fac 53.4 3.8 0.00013 23.9 0.7 18 492-509 3-20 (29)
67 1znf_A 31ST zinc finger from X 52.7 4 0.00014 23.4 0.7 18 492-509 2-19 (27)
68 2m0d_A Zinc finger and BTB dom 51.4 6.3 0.00022 22.9 1.5 19 491-509 3-21 (30)
69 1klr_A Zinc finger Y-chromosom 51.1 4.9 0.00017 23.4 0.9 18 492-509 3-20 (30)
70 2m0f_A Zinc finger and BTB dom 50.4 6.8 0.00023 22.6 1.5 18 492-509 3-20 (29)
71 3i8o_A KH domain-containing pr 50.2 15 0.00053 32.3 4.3 39 388-426 94-132 (142)
72 2elx_A Zinc finger protein 406 49.7 6.9 0.00024 24.0 1.5 20 490-509 6-25 (35)
73 2akl_A PHNA-like protein PA012 49.6 7.1 0.00024 33.8 1.9 28 450-501 27-54 (138)
74 1dl6_A Transcription factor II 49.1 11 0.00039 27.8 2.8 13 490-502 29-41 (58)
75 1li5_A Cysrs, cysteinyl-tRNA s 49.0 7.3 0.00025 41.0 2.4 35 367-401 49-83 (461)
76 3v2d_5 50S ribosomal protein L 48.0 7.6 0.00026 29.1 1.6 11 449-459 29-39 (60)
77 2elt_A Zinc finger protein 406 47.0 8.1 0.00028 23.9 1.5 20 490-509 8-27 (36)
78 3cc2_Z 50S ribosomal protein L 46.6 8.3 0.00028 32.7 1.9 15 490-504 77-91 (116)
79 2elo_A Zinc finger protein 406 45.8 6.4 0.00022 24.6 0.9 20 490-509 8-27 (37)
80 3ix7_A Uncharacterized protein 45.0 16 0.00056 31.8 3.6 37 388-424 86-122 (134)
81 2zjr_Z 50S ribosomal protein L 44.3 8.5 0.00029 28.8 1.4 12 448-459 28-39 (60)
82 1o4w_A PIN (PILT N-terminus) d 44.0 15 0.00052 31.9 3.3 41 386-427 98-138 (147)
83 6rxn_A Rubredoxin; electron tr 43.9 8.2 0.00028 27.3 1.2 14 490-503 3-16 (46)
84 1srk_A Zinc finger protein ZFP 43.9 9.6 0.00033 23.4 1.5 20 490-509 6-25 (35)
85 3c8z_A Cysteinyl-tRNA syntheta 43.5 7.5 0.00026 40.3 1.4 34 367-400 66-99 (414)
86 2elp_A Zinc finger protein 406 43.5 12 0.00041 23.3 2.0 21 489-509 7-28 (37)
87 1d0q_A DNA primase; zinc-bindi 42.3 13 0.00043 30.7 2.4 47 433-499 19-66 (103)
88 2elv_A Zinc finger protein 406 42.0 11 0.00037 23.4 1.5 20 490-509 8-27 (36)
89 2lvt_A Zinc finger and BTB dom 47.9 5.4 0.00019 23.3 0.0 17 492-508 3-19 (29)
90 1gh9_A 8.3 kDa protein (gene M 41.7 11 0.00036 29.3 1.6 12 489-501 19-30 (71)
91 3u50_C Telomerase-associated p 41.3 11 0.00036 34.4 1.9 28 449-500 41-68 (172)
92 3o9x_A Uncharacterized HTH-typ 40.5 16 0.00055 30.9 2.8 27 490-516 35-61 (133)
93 2elm_A Zinc finger protein 406 40.4 17 0.00057 22.8 2.3 21 489-509 7-27 (37)
94 2lvr_A Zinc finger and BTB dom 46.1 6.1 0.00021 23.1 0.0 17 492-508 4-20 (30)
95 2elq_A Zinc finger protein 406 39.8 12 0.00042 23.1 1.5 21 489-509 7-27 (36)
96 1rim_A E6APC2 peptide; E6-bind 39.6 7.8 0.00027 23.9 0.5 18 492-509 3-20 (33)
97 3iuf_A Zinc finger protein UBI 39.4 12 0.0004 25.5 1.5 20 490-509 6-25 (48)
98 1paa_A Yeast transcription fac 39.1 10 0.00034 22.1 1.0 17 492-508 3-19 (30)
99 1njq_A Superman protein; zinc- 38.5 13 0.00044 23.6 1.5 20 490-509 5-24 (39)
100 2yts_A Zinc finger protein 484 38.2 13 0.00044 24.5 1.5 21 489-509 10-30 (46)
101 3pwf_A Rubrerythrin; non heme 38.1 12 0.00042 33.8 1.8 14 489-502 136-149 (170)
102 2elr_A Zinc finger protein 406 37.9 9.2 0.00031 23.6 0.7 21 489-509 7-27 (36)
103 1p7a_A BF3, BKLF, kruppel-like 37.3 9.6 0.00033 23.7 0.7 20 490-509 10-29 (37)
104 3dbo_B Uncharacterized protein 37.2 19 0.00064 31.7 2.8 45 365-415 97-141 (150)
105 2emi_A Zinc finger protein 484 37.0 14 0.00047 24.4 1.5 20 490-509 11-30 (46)
106 3sp1_A Cysteinyl-tRNA syntheta 36.6 8.2 0.00028 41.1 0.4 35 367-401 69-113 (501)
107 2yrj_A Zinc finger protein 473 36.5 14 0.00048 24.3 1.5 21 489-509 10-30 (46)
108 2epv_A Zinc finger protein 268 36.1 15 0.0005 24.1 1.5 20 490-509 11-30 (44)
109 2eoy_A Zinc finger protein 473 35.7 18 0.0006 23.9 1.9 20 490-509 11-30 (46)
110 2epc_A Zinc finger protein 32; 35.7 15 0.00051 23.5 1.5 20 490-509 10-29 (42)
111 2kpi_A Uncharacterized protein 35.6 18 0.0006 26.6 1.9 11 451-461 11-21 (56)
112 3ray_A PR domain-containing pr 34.7 13 0.00045 35.6 1.4 25 478-503 18-42 (237)
113 2em3_A Zinc finger protein 28 34.3 16 0.00055 24.1 1.5 21 489-509 10-30 (46)
114 2d74_B Translation initiation 34.3 34 0.0012 30.2 4.0 53 422-500 82-134 (148)
115 2odx_A Cytochrome C oxidase po 34.1 15 0.00051 29.2 1.4 13 489-501 54-66 (80)
116 2em4_A Zinc finger protein 28 33.9 16 0.00056 24.1 1.5 22 489-510 10-31 (46)
117 2yto_A Zinc finger protein 484 33.9 16 0.00056 24.1 1.5 22 489-510 10-31 (46)
118 2eoj_A Zinc finger protein 268 33.6 13 0.00044 24.2 0.9 21 489-509 10-30 (44)
119 2epu_A Zinc finger protein 32; 33.2 17 0.00056 23.9 1.4 21 489-509 10-30 (45)
120 2emj_A Zinc finger protein 28 33.2 17 0.00059 23.9 1.5 21 490-510 11-31 (46)
121 2eox_A Zinc finger protein 473 33.1 18 0.00062 23.5 1.6 21 489-509 10-30 (44)
122 2kfq_A FP1; protein, de novo p 33.1 7.2 0.00025 23.8 -0.5 16 492-507 3-18 (32)
123 2eoz_A Zinc finger protein 473 33.0 17 0.00057 24.0 1.4 21 489-509 10-30 (46)
124 2el5_A Zinc finger protein 268 33.0 18 0.00061 23.2 1.5 21 489-509 8-28 (42)
125 2emb_A Zinc finger protein 473 32.5 18 0.00061 23.5 1.5 20 490-509 11-30 (44)
126 2ytf_A Zinc finger protein 268 32.4 18 0.00062 23.7 1.5 21 489-509 10-30 (46)
127 2yu5_A Zinc finger protein 473 32.4 22 0.00075 23.1 1.9 20 490-509 11-30 (44)
128 2enh_A Zinc finger protein 28 32.2 15 0.00051 24.3 1.0 20 490-509 11-30 (46)
129 2ep3_A Zinc finger protein 484 32.2 18 0.00063 23.7 1.5 21 489-509 10-30 (46)
130 2eml_A Zinc finger protein 28 32.1 18 0.00063 23.7 1.5 21 489-509 10-30 (46)
131 1yui_A GAGA-factor; complex (D 32.1 18 0.00061 25.0 1.5 21 489-509 22-42 (54)
132 2emh_A Zinc finger protein 484 32.0 18 0.00063 23.7 1.5 22 489-510 10-31 (46)
133 2ept_A Zinc finger protein 32; 32.0 19 0.00064 23.0 1.5 19 490-508 9-27 (41)
134 1s24_A Rubredoxin 2; electron 31.8 16 0.00056 29.4 1.3 15 489-503 33-47 (87)
135 2ytp_A Zinc finger protein 484 31.8 19 0.00064 23.8 1.5 21 489-509 10-30 (46)
136 1v54_F VI, cytochrome C oxidas 31.6 17 0.00057 30.0 1.4 13 489-501 77-89 (98)
137 2eor_A Zinc finger protein 224 31.5 19 0.00065 23.6 1.5 22 489-510 10-31 (46)
138 2eof_A Zinc finger protein 268 31.5 19 0.00065 23.3 1.5 21 489-509 10-30 (44)
139 2en3_A ZFP-95, zinc finger pro 31.5 23 0.00077 23.3 1.9 21 489-509 10-30 (46)
140 2ab3_A ZNF29; zinc finger prot 31.5 20 0.00067 20.4 1.4 18 492-509 3-22 (29)
141 2kn9_A Rubredoxin; metalloprot 31.4 16 0.00055 29.0 1.2 15 489-503 25-39 (81)
142 2epw_A Zinc finger protein 268 31.3 23 0.00078 23.2 1.9 20 490-509 11-30 (46)
143 2ep2_A Zinc finger protein 484 31.2 19 0.00066 23.6 1.5 21 489-509 10-30 (46)
144 1l1o_C Replication protein A 7 31.0 23 0.0008 32.2 2.4 12 490-501 61-72 (181)
145 2em8_A Zinc finger protein 224 30.9 20 0.00068 23.6 1.5 21 489-509 10-30 (46)
146 3m7n_A Putative uncharacterize 30.7 8.7 0.0003 35.1 -0.6 15 447-461 137-151 (179)
147 2yu8_A Zinc finger protein 347 30.6 24 0.00082 23.1 1.9 21 489-509 10-30 (46)
148 2lo3_A SAGA-associated factor 30.5 23 0.00078 24.5 1.6 14 488-501 14-27 (44)
149 2em7_A Zinc finger protein 224 30.5 20 0.00069 23.5 1.5 21 489-509 10-30 (46)
150 3u1f_A Methionyl-tRNA syntheta 30.1 18 0.00061 38.5 1.7 33 367-401 37-71 (542)
151 3d45_A Poly(A)-specific ribonu 30.1 57 0.0019 34.6 5.6 108 100-217 272-393 (507)
152 1qyp_A RNA polymerase II; tran 29.9 20 0.00068 26.1 1.4 12 489-500 41-52 (57)
153 2em2_A Zinc finger protein 28 29.7 21 0.00073 23.5 1.5 20 490-509 11-30 (46)
154 2emx_A Zinc finger protein 268 29.7 22 0.00074 23.1 1.5 21 489-509 8-28 (44)
155 1qf8_A Casein kinase II; casei 29.7 40 0.0014 30.9 3.7 53 431-504 92-147 (182)
156 2eq0_A Zinc finger protein 347 29.6 21 0.00073 23.4 1.5 21 489-509 10-30 (46)
157 2ytg_A ZFP-95, zinc finger pro 29.5 23 0.00079 23.2 1.7 21 489-509 10-30 (46)
158 2ene_A Zinc finger protein 347 29.4 22 0.00074 23.4 1.5 21 489-509 10-30 (46)
159 1yuz_A Nigerythrin; rubrythrin 29.4 31 0.0011 32.0 3.0 28 430-459 153-180 (202)
160 4gzn_C ZFP-57, zinc finger pro 29.3 21 0.00072 26.1 1.5 19 491-509 4-22 (60)
161 2enf_A Zinc finger protein 347 29.3 15 0.00052 24.2 0.7 21 489-509 10-30 (46)
162 2eos_A B-cell lymphoma 6 prote 29.2 16 0.00053 23.6 0.7 20 490-509 10-29 (42)
163 2en1_A Zinc finger protein 224 29.2 21 0.00072 23.4 1.4 21 489-509 10-30 (46)
164 2au3_A DNA primase; zinc ribbo 29.2 28 0.00096 35.8 2.9 47 433-499 16-63 (407)
165 2el6_A Zinc finger protein 268 29.1 22 0.00077 23.3 1.5 21 489-509 10-30 (46)
166 2ytb_A Zinc finger protein 32; 29.1 14 0.00049 23.6 0.5 19 490-508 10-28 (42)
167 2ysp_A Zinc finger protein 224 29.1 21 0.00073 23.4 1.4 21 489-509 10-30 (46)
168 2ytj_A Zinc finger protein 484 29.0 22 0.00076 23.3 1.5 21 489-509 10-30 (46)
169 2eow_A Zinc finger protein 347 28.8 26 0.00088 22.9 1.8 21 489-509 10-30 (46)
170 2yte_A Zinc finger protein 473 28.8 16 0.00054 23.4 0.7 20 490-509 9-28 (42)
171 2eoo_A ZFP-95, zinc finger pro 28.8 23 0.00078 23.3 1.5 22 489-510 10-31 (46)
172 2emy_A Zinc finger protein 268 28.5 23 0.00079 23.2 1.5 22 489-510 10-31 (46)
173 2e9h_A EIF-5, eukaryotic trans 28.5 52 0.0018 29.4 4.2 59 422-504 81-139 (157)
174 2emf_A Zinc finger protein 484 28.3 23 0.0008 23.3 1.5 21 489-509 10-30 (46)
175 2ep0_A Zinc finger protein 28 28.2 24 0.00081 23.2 1.5 21 489-509 10-30 (46)
176 3jyw_9 60S ribosomal protein L 28.1 26 0.00088 27.2 1.8 15 490-504 43-57 (72)
177 1ncs_A Peptide M30F, transcrip 28.1 30 0.001 23.1 2.0 21 489-509 16-38 (47)
178 2ytq_A Zinc finger protein 268 28.0 17 0.00057 24.0 0.7 20 490-509 11-30 (46)
179 2eq3_A Zinc finger protein 347 27.7 18 0.00061 23.7 0.8 20 490-509 11-30 (46)
180 2eq2_A Zinc finger protein 347 27.6 15 0.0005 24.3 0.3 21 489-509 10-30 (46)
181 2el4_A Zinc finger protein 268 27.4 25 0.00086 23.0 1.5 20 490-509 11-30 (46)
182 2emg_A Zinc finger protein 484 27.4 17 0.00059 23.9 0.7 20 490-509 11-30 (46)
183 2i5o_A DNA polymerase ETA; zin 27.3 29 0.001 23.6 1.8 13 489-501 7-19 (39)
184 3q87_A Putative uncharacterize 27.3 19 0.00065 31.0 1.0 11 491-501 99-109 (125)
185 2ytk_A Zinc finger protein 347 27.3 25 0.00085 23.0 1.5 21 489-509 10-30 (46)
186 2yth_A Zinc finger protein 224 27.3 18 0.0006 23.9 0.7 20 490-509 11-30 (46)
187 2em9_A Zinc finger protein 224 27.2 25 0.00086 23.0 1.5 21 489-509 10-30 (46)
188 2enc_A Zinc finger protein 224 27.2 25 0.00086 23.0 1.5 20 490-509 11-30 (46)
189 3zvk_A VAPC2, toxin of toxin-a 27.0 32 0.0011 28.7 2.5 41 366-412 82-123 (134)
190 2eon_A ZFP-95, zinc finger pro 27.0 18 0.00061 23.9 0.7 21 489-509 10-30 (46)
191 2ema_A Zinc finger protein 347 26.9 26 0.00088 23.0 1.5 21 489-509 10-30 (46)
192 2eps_A POZ-, at HOOK-, and zin 26.8 25 0.00086 24.2 1.5 21 489-509 10-30 (54)
193 2ely_A Zinc finger protein 224 26.8 23 0.00078 23.3 1.2 20 490-509 11-30 (46)
194 2e72_A POGO transposable eleme 26.7 16 0.00055 26.0 0.4 13 490-502 11-23 (49)
195 2en2_A B-cell lymphoma 6 prote 26.7 26 0.00089 22.3 1.5 21 489-509 9-29 (42)
196 2emk_A Zinc finger protein 28 26.5 18 0.00063 23.8 0.7 21 490-510 11-31 (46)
197 3tnd_A TRNA(FMet)-specific end 26.5 47 0.0016 27.5 3.5 40 367-412 82-122 (132)
198 2eou_A Zinc finger protein 473 26.4 17 0.00059 23.7 0.5 21 489-509 10-30 (44)
199 1lko_A Rubrerythrin all-iron(I 26.4 22 0.00076 32.6 1.4 15 490-505 154-168 (191)
200 2en7_A Zinc finger protein 268 26.4 17 0.00057 23.6 0.4 20 490-509 11-30 (44)
201 3kfl_A Methionyl-tRNA syntheta 26.3 21 0.00071 38.5 1.4 35 367-401 54-88 (564)
202 2lcq_A Putative toxin VAPC6; P 26.3 21 0.00072 31.7 1.2 14 432-445 106-119 (165)
203 2epq_A POZ-, at HOOK-, and zin 26.3 20 0.00067 23.5 0.8 22 489-510 8-29 (45)
204 2en8_A Zinc finger protein 224 26.1 27 0.00092 22.8 1.5 20 490-509 11-30 (46)
205 2ep1_A Zinc finger protein 484 26.1 17 0.00058 23.9 0.4 21 489-509 10-30 (46)
206 2k5r_A Uncharacterized protein 26.0 72 0.0025 26.1 4.2 13 489-501 51-63 (97)
207 2ytd_A Zinc finger protein 473 26.0 27 0.00093 22.8 1.5 20 490-509 11-30 (46)
208 4dgl_A Casein kinase II subuni 26.0 48 0.0017 31.1 3.6 54 431-505 92-148 (215)
209 2em5_A ZFP-95, zinc finger pro 25.9 27 0.00094 22.9 1.5 21 489-509 10-30 (46)
210 2emz_A ZFP-95, zinc finger pro 25.9 18 0.00061 23.9 0.5 21 490-510 11-31 (46)
211 3qt1_I DNA-directed RNA polyme 25.8 32 0.0011 29.8 2.2 33 452-503 26-58 (133)
212 4dlp_A Aminoacyl-tRNA syntheta 25.8 22 0.00076 37.9 1.5 34 367-400 53-86 (536)
213 2em6_A Zinc finger protein 224 25.8 19 0.00066 23.7 0.7 21 489-509 10-30 (46)
214 1wg2_A Zinc finger (AN1-like) 25.7 42 0.0015 25.4 2.6 11 450-460 15-25 (64)
215 1fv5_A First zinc finger of U- 25.2 22 0.00077 23.2 0.9 21 489-509 6-26 (36)
216 2yti_A Zinc finger protein 347 25.1 17 0.00059 23.9 0.3 20 490-509 11-30 (46)
217 3tr8_A Oligoribonuclease; tran 25.1 84 0.0029 28.5 5.1 47 91-141 87-137 (186)
218 1yuz_A Nigerythrin; rubrythrin 25.1 26 0.0009 32.5 1.7 14 489-502 169-182 (202)
219 2eoh_A Zinc finger protein 28 25.1 19 0.00065 23.7 0.5 20 490-509 11-30 (46)
220 2a1r_A Poly(A)-specific ribonu 24.9 1.1E+02 0.0037 31.7 6.5 108 103-217 280-398 (430)
221 2emm_A ZFP-95, zinc finger pro 24.9 29 0.001 22.6 1.5 21 489-509 10-30 (46)
222 2eme_A Zinc finger protein 473 24.8 30 0.001 22.6 1.5 20 490-509 11-30 (46)
223 2epr_A POZ-, at HOOK-, and zin 24.7 28 0.00097 23.2 1.4 21 489-509 10-30 (48)
224 2epx_A Zinc finger protein 28 24.7 21 0.00072 23.4 0.7 20 490-509 11-30 (47)
225 2yxb_A Coenzyme B12-dependent 24.6 56 0.0019 28.9 3.7 33 367-400 37-69 (161)
226 2y69_F Cytochrome C oxidase su 24.6 26 0.00089 30.3 1.4 13 489-501 108-120 (129)
227 2elz_A Zinc finger protein 224 24.4 21 0.00073 23.5 0.7 20 490-509 11-30 (46)
228 2lv2_A Insulinoma-associated p 24.3 28 0.00096 27.4 1.5 21 489-509 26-46 (85)
229 2dmd_A Zinc finger protein 64, 24.1 85 0.0029 23.8 4.4 9 452-460 10-18 (96)
230 1ee8_A MUTM (FPG) protein; bet 23.8 27 0.00091 33.9 1.5 12 488-499 252-263 (266)
231 2en6_A Zinc finger protein 268 23.7 36 0.0012 22.2 1.8 21 489-509 10-30 (46)
232 1vd4_A Transcription initiatio 23.7 38 0.0013 24.2 2.0 19 489-507 12-30 (62)
233 2eoq_A Zinc finger protein 224 23.6 21 0.00071 23.4 0.5 21 489-509 10-30 (46)
234 2x1l_A Methionyl-tRNA syntheta 23.6 26 0.00089 37.1 1.5 34 367-400 40-73 (524)
235 3h87_A Putative uncharacterize 23.6 61 0.0021 28.5 3.7 48 366-417 95-142 (156)
236 3u6p_A Formamidopyrimidine-DNA 23.6 29 0.001 33.8 1.7 12 488-499 262-273 (273)
237 2emp_A Zinc finger protein 347 23.5 32 0.0011 22.4 1.5 21 489-509 10-30 (46)
238 2eop_A Zinc finger protein 268 23.4 23 0.00077 23.2 0.7 20 490-509 11-30 (46)
239 2en9_A Zinc finger protein 28 23.4 23 0.00077 23.3 0.7 21 489-509 10-30 (46)
240 3h0g_I DNA-directed RNA polyme 23.3 40 0.0014 28.2 2.3 36 451-505 5-40 (113)
241 1sp2_A SP1F2; zinc finger, tra 23.3 24 0.00081 20.8 0.7 18 492-509 3-22 (31)
242 2yso_A ZFP-95, zinc finger pro 23.3 33 0.0011 22.4 1.5 20 490-509 11-30 (46)
243 2eoe_A Zinc finger protein 347 23.0 25 0.00085 23.0 0.8 21 489-509 10-30 (46)
244 1wfh_A Zinc finger (AN1-like) 23.0 51 0.0017 24.9 2.6 11 450-460 15-25 (64)
245 2eq1_A Zinc finger protein 347 22.6 22 0.00077 23.3 0.5 21 489-509 10-30 (46)
246 2epz_A Zinc finger protein 28 22.5 24 0.00083 23.1 0.7 20 490-509 11-30 (46)
247 2eov_A Zinc finger protein 484 22.5 24 0.00084 23.0 0.7 20 490-509 11-30 (46)
248 1nee_A EIF-2-beta, probable tr 22.4 38 0.0013 29.6 2.1 45 430-500 88-132 (138)
249 2ytn_A Zinc finger protein 347 22.2 25 0.00085 23.1 0.7 21 489-509 10-30 (46)
250 1zfd_A SWI5; DNA binding motif 21.9 32 0.0011 20.3 1.1 18 492-509 4-23 (32)
251 2d5b_A Methionyl-tRNA syntheta 21.9 25 0.00087 36.9 1.0 34 367-400 31-64 (500)
252 2xzf_A Formamidopyrimidine-DNA 21.8 34 0.0011 33.3 1.8 12 488-499 259-270 (271)
253 3uk3_C Zinc finger protein 217 21.7 36 0.0012 23.2 1.5 20 490-509 31-50 (57)
254 2ytt_A Zinc finger protein 473 21.6 22 0.00076 23.4 0.3 21 490-510 11-31 (46)
255 1twf_I B12.6, DNA-directed RNA 21.6 41 0.0014 28.5 2.1 35 451-504 5-39 (122)
256 2eom_A ZFP-95, zinc finger pro 21.5 24 0.00083 23.2 0.5 20 490-509 11-30 (46)
257 1wfp_A Zinc finger (AN1-like) 21.4 57 0.002 25.4 2.6 11 450-460 25-35 (74)
258 1k82_A Formamidopyrimidine-DNA 21.4 34 0.0012 33.1 1.7 12 488-499 257-268 (268)
259 2ytm_A Zinc finger protein 28 21.4 23 0.0008 23.3 0.4 20 490-509 11-30 (46)
260 2yrm_A B-cell lymphoma 6 prote 21.4 27 0.00092 22.6 0.7 21 489-509 8-28 (43)
261 2eq4_A Zinc finger protein 224 21.3 29 0.001 22.6 0.9 21 489-509 10-30 (46)
262 2lce_A B-cell lymphoma 6 prote 21.3 26 0.00089 25.7 0.7 21 489-509 15-35 (74)
263 2jrp_A Putative cytoplasmic pr 21.3 58 0.002 25.8 2.7 10 451-460 3-12 (81)
264 1bbo_A Human enhancer-binding 21.2 38 0.0013 23.1 1.5 20 489-508 27-46 (57)
265 2adr_A ADR1; transcription reg 21.2 37 0.0013 23.5 1.5 21 489-509 28-48 (60)
266 2cr8_A MDM4 protein; ZF-ranbp 21.1 40 0.0014 24.2 1.5 13 488-500 8-20 (53)
267 2drp_A Protein (tramtrack DNA- 20.6 38 0.0013 24.0 1.5 21 489-509 8-28 (66)
268 2em0_A Zinc finger protein 224 20.6 26 0.0009 22.9 0.5 21 489-509 10-30 (46)
269 1ffk_W Ribosomal protein L37AE 20.6 35 0.0012 26.5 1.3 15 490-504 44-58 (73)
270 3ikm_A DNA polymerase subunit 20.5 70 0.0024 37.1 4.2 57 163-219 288-350 (1172)
271 3j21_g 50S ribosomal protein L 20.4 33 0.0011 24.8 1.0 10 491-500 28-37 (51)
272 2g2k_A EIF-5, eukaryotic trans 20.2 51 0.0017 29.8 2.4 49 429-501 81-129 (170)
273 2csx_A Methionyl-tRNA syntheta 20.1 32 0.0011 36.1 1.3 34 367-400 33-66 (497)
274 3h99_A Methionyl-tRNA syntheta 20.1 31 0.0011 36.9 1.2 34 367-400 46-79 (560)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.95 E-value=7.3e-27 Score=247.19 Aligned_cols=176 Identities=26% Similarity=0.369 Sum_probs=158.1
Q ss_pred CccEEEEcCCChHHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC
Q 009948 8 PLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI 87 (522)
Q Consensus 8 ~~~i~~I~t~~~~el~~l~~~L~~~~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l 87 (522)
...|++|++ .+++..+++.+...+.||||+||.+... +.+++++||||+. +++|+||+..+
T Consensus 107 ~~~y~~I~t--~e~L~~~l~~L~~~~~vavDtE~~~~~~---~~~~l~lIQLa~~--------------~~~~lidpl~l 167 (428)
T 3saf_A 107 ETPCHFISS--LDELVELNEKLLNCQEFAVNLEHHSYRS---FLGLTCLMQISTR--------------TEDFIIDTLEL 167 (428)
T ss_dssp GSCEEEECS--HHHHHHHHHHHTTCSEEEEEEEEECTTC---SSCEEEEEEEECS--------------SCEEEEETTTT
T ss_pred CCCcEEECC--HHHHHHHHHHHhcCCeEEEEEEecCCCC---CCCeEEEEEEEeC--------------CcEEEEEeccc
Confidence 356889998 8999999999998999999999988764 6789999999985 57899998876
Q ss_pred CchhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHH
Q 009948 88 PLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANI 167 (522)
Q Consensus 88 ~~~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L 167 (522)
. ..+..|+++|+|++|.|||||+++|+.+|.+.+|+ . +.++|| |++|+|+++++ .+||+.|
T Consensus 168 ~--~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi---~-----~~~~fD-T~lAa~lL~~~--------~~gL~~L 228 (428)
T 3saf_A 168 R--SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGL---Y-----VVNMFD-THQAARLLNLG--------RHSLDHL 228 (428)
T ss_dssp G--GGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC---C-----CSSEEE-HHHHHHHTTCS--------CCSHHHH
T ss_pred h--hhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCC---C-----cCceee-chhHHHHhCCC--------CCCHHHH
Confidence 3 24578999999999999999999999999766665 2 368999 99999999863 5899999
Q ss_pred HHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009948 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (522)
Q Consensus 168 ~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~ 221 (522)
++++||++++|+.+.+||..|||+++|+.|||.||+++++||+.|.++|++.|.
T Consensus 229 v~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~ 282 (428)
T 3saf_A 229 LKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGN 282 (428)
T ss_dssp HHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999987
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.94 E-value=4e-26 Score=219.50 Aligned_cols=184 Identities=30% Similarity=0.405 Sum_probs=148.3
Q ss_pred CCCccEEEEcCCChHHHH----HHHHHhcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEE
Q 009948 6 RKPLKIHLVTSTESPEFT----HLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFL 81 (522)
Q Consensus 6 ~~~~~i~~I~t~~~~el~----~l~~~L~~~~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~l 81 (522)
..+.+|++|++ ++++. .++..+...++||||+||.+.+.. .+.++++++|+|+. ++.+|+
T Consensus 12 ~f~g~i~~i~~--~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~-~~~~~~~~iqla~~-------------~~~~~~ 75 (208)
T 2e6m_A 12 EFPGSIVYSYE--ASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKP-GKRSRVAVIQLCVS-------------ESKCYL 75 (208)
T ss_dssp CCCSEEEEECS--HHHHHHHHHHHHHHCCTTCEEEEEEECCC---C-CSCCCCCEEEEECS-------------SSEEEE
T ss_pred ccCCcEEEEeC--HHHHHHHHHHHHHHhccCCEEEEEeecCCCCCC-CCCCCeEEEEEecC-------------CCeEEE
Confidence 34567899998 78887 555677778899999999987321 14578999999984 368899
Q ss_pred EeCCCCCchhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCc
Q 009948 82 LDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKET 161 (522)
Q Consensus 82 iD~~~l~~~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~ 161 (522)
||+..+. .+...|+++|+|++|.|||||+++|+..|.+.+|+ . +.++||++++|+|++++. .+
T Consensus 76 i~~~~~~--~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi---~-----~~~~fDlt~lAayll~~~-------~~ 138 (208)
T 2e6m_A 76 FHISSMS--VFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDV---K-----LESFVELTDVANEKLKCA-------ET 138 (208)
T ss_dssp ECGGGCS--SCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCC---C-----CCSEEEHHHHHHHHTTCC-------CC
T ss_pred EECcccc--cchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCC---C-----CCCEEEHHHHHHHHccCC-------CC
Confidence 9876543 24568999999999999999999999999886665 1 356999999999999863 57
Q ss_pred ccHHHHHHHHcCCcccc--ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009948 162 KSLANICKELLDISLSK--ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (522)
Q Consensus 162 ~gL~~L~~~~Lg~~L~K--~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~ 222 (522)
+||++|++++||..+.| ..+++||+.|||+++|+.|||.||+++++||+.|.++|++.|++
T Consensus 139 ~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~ 201 (208)
T 2e6m_A 139 WSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVF 201 (208)
T ss_dssp CCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred hhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 89999999999999855 67899999999999999999999999999999999999888765
No 3
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.94 E-value=2e-26 Score=221.56 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=131.1
Q ss_pred HHHHHHHHHh------cCCCeEEEEEEEeCCCCC---CCCC--CceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCC
Q 009948 20 PEFTHLARAL------SQSSLVGLDAEWKPQRSH---QSNF--PRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIP 88 (522)
Q Consensus 20 ~el~~l~~~L------~~~~~Vg~D~E~~~~~~~---~~~~--~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~ 88 (522)
+++..+++.+ ....+||||+||.+.+.. .++. +++||||||+. +.+++|++. ..
T Consensus 28 ~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~--------------~~~~l~~l~-~~ 92 (206)
T 1vk0_A 28 TDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTR--------------NLCLFLRLP-KP 92 (206)
T ss_dssp CCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECS--------------SEEEEEECC-SS
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecC--------------CCeEEEecc-cc
Confidence 4455555444 567899999999976510 0133 48999999985 579999983 11
Q ss_pred chhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHH
Q 009948 89 LPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANIC 168 (522)
Q Consensus 89 ~~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~ 168 (522)
.+..+..|..+|+|++|+||||++++|+..|.+.||+ .+.++||++.+|+.+++... ....||+.|+
T Consensus 93 ~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~--------~~~~~~Dl~~la~~~lg~~~-----~~~~gL~~Lv 159 (206)
T 1vk0_A 93 FHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGL--------VIRNAINVGKLAAEARGTLV-----LEFLGTRELA 159 (206)
T ss_dssp CCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCC--------CCSSEEEHHHHHHHHHTCGG-----GGGCCHHHHH
T ss_pred CCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCC--------CcCCeeeHHHHHHHHcCCCC-----CCCccHHHHH
Confidence 1223456889999999999999999999999988765 24899997778877665310 1478999999
Q ss_pred HHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 169 KELLDISL-SKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 169 ~~~Lg~~L-~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (522)
+++||.++ +|..++|||+. ||+++|+.|||.||+++++||+.|.+
T Consensus 160 ~~~lg~~lK~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 160 HRVLWSDLGQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHCCCCHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcCCCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999 55779999999 99999999999999999999999964
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.93 E-value=5.3e-25 Score=232.67 Aligned_cols=175 Identities=24% Similarity=0.342 Sum_probs=153.5
Q ss_pred cEEEEcCCChHHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCc
Q 009948 10 KIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPL 89 (522)
Q Consensus 10 ~i~~I~t~~~~el~~l~~~L~~~~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~ 89 (522)
.+.+|++ .+++..+++.+...++||||+||.+... +.+++++||||+. +.+|++|+..+.
T Consensus 86 ~~~~I~t--~~~L~~~~~~L~~~~~vavDtE~~~~~~---~~~~l~liQla~~--------------~~~ylid~l~l~- 145 (410)
T 2hbj_A 86 VPIWVDT--STELESMLEDLKNTKEIAVDLEHHDYRS---YYGIVCLMQISTR--------------ERDYLVDTLKLR- 145 (410)
T ss_dssp CCEEECS--HHHHHHHHHHHTTCSEEEEEEEEECSSS---SSCEEEEEEEECS--------------SCEEEEETTTTT-
T ss_pred CcEEeCC--HHHHHHHHHHHhhCCceEEEeeecCCcC---CCCcEEEEEEEEC--------------CcEEEEechhhh-
Confidence 3778888 7889999999888899999999987542 5688999999984 478999975542
Q ss_pred hhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHH
Q 009948 90 PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (522)
Q Consensus 90 ~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~ 169 (522)
..+..|+++|+|++|.|||||+++|+..|.+.+|+ . +.++|| |++|+|+++++ ++||+.|++
T Consensus 146 -~~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi---~-----~~~~fD-t~lAa~LL~~~--------~~~L~~L~~ 207 (410)
T 2hbj_A 146 -ENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGL---Y-----VVGLFD-TYHASKAIGLP--------RHSLAYLLE 207 (410)
T ss_dssp -TTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC---C-----CSSEEE-HHHHHHHHTCS--------CCSHHHHHH
T ss_pred -hhHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCC---C-----cCCEEE-cHHHHHHhCCC--------ccCHHHHHH
Confidence 23557899999999999999999999999887665 2 356999 99999999863 689999999
Q ss_pred HHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009948 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (522)
Q Consensus 170 ~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~ 222 (522)
++||..++|+.+.+||..|||+++|+.|||.||++++.||+.|.++|++.|++
T Consensus 208 ~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~ 260 (410)
T 2hbj_A 208 NFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKL 260 (410)
T ss_dssp HHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999999999986
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.93 E-value=5.3e-25 Score=230.36 Aligned_cols=215 Identities=22% Similarity=0.320 Sum_probs=174.3
Q ss_pred cEEEEcCCChHHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCc
Q 009948 10 KIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPL 89 (522)
Q Consensus 10 ~i~~I~t~~~~el~~l~~~L~~~~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~ 89 (522)
+|++|++ .+++..+++.+...++||||+||.+... +.+.+++|||++. +.+|++|+..+.
T Consensus 2 ~~~~I~t--~~~l~~~~~~l~~~~~va~D~E~~~~~~---~~~~l~liqla~~--------------~~~~lid~~~l~- 61 (375)
T 1yt3_A 2 NYQMITT--DDALASLCEAVRAFPAIALDTEFVRTRT---YYPQLGLIQLFDG--------------EHLALIDPLGIT- 61 (375)
T ss_dssp CCEEECS--HHHHHHHHHHHTTSSEEEEEEEEECCSC---SSCEEEEEEEECS--------------SCEEEECGGGCS-
T ss_pred CeEEeCC--HHHHHHHHHHHcCCCeEEEEeeecCCCc---CCCceEEEEEecC--------------CcEEEEeCCCCC-
Confidence 4678887 7889999999888899999999998763 5689999999984 468999965442
Q ss_pred hhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHH
Q 009948 90 PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (522)
Q Consensus 90 ~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~ 169 (522)
.+..|+++|+|++|.|||||+++|+..|.+.||+ . ..++|| |++|+|++++. .++||+.|++
T Consensus 62 --~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi---~-----~~~~fD-t~lAa~lL~~~-------~~~~L~~L~~ 123 (375)
T 1yt3_A 62 --DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE---L-----PQPLID-TQILAAFCGRP-------MSWGFASMVE 123 (375)
T ss_dssp --CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSS---C-----CSSEEE-HHHHHHHTTCC-------TTCCHHHHHH
T ss_pred --ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCC---C-----CCcEEE-cHHHHHHcCCC-------CChhHHHHHH
Confidence 3567999999999999999999999999876655 2 258999 99999999873 5799999999
Q ss_pred HHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccchhhcccCc--cCCCCCCCccc
Q 009948 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS---CSSISELDSSN--LDLGLKGILEK 244 (522)
Q Consensus 170 ~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~---~~~~~~~~~~~--~~~~~~~~~~~ 244 (522)
++||..++|+.+++||..|||+++|+.|||.||++++.||+.|.++|++.|++ -+|++..-... ....-..|++.
T Consensus 124 ~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~~l~~~e~E~pl~~~~~~~~~~~~~~~~ 203 (375)
T 1yt3_A 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDI 203 (375)
T ss_dssp HHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCCGGGGGGGS
T ss_pred HHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhcccCCCchHHHHhc
Confidence 99999999999999999999999999999999999999999999999999875 34555442211 11122357777
Q ss_pred CCCCCcchhhhhhhHHHHHHHhh
Q 009948 245 PDIGNKTVRFKLCEALDIIRATS 267 (522)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~ 267 (522)
.+.+ +. .++++++++++.
T Consensus 204 ~~~~----~l-~~~~~~~~~~L~ 221 (375)
T 1yt3_A 204 TNAW----QL-RTRQLACLQLLA 221 (375)
T ss_dssp TTGG----GS-CHHHHHHHHHHH
T ss_pred cCcc----cC-CHHHHHHHHHHH
Confidence 5544 33 467888888773
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.89 E-value=1.8e-22 Score=215.01 Aligned_cols=216 Identities=23% Similarity=0.276 Sum_probs=171.6
Q ss_pred EEEEcCCChHHHHHHHHHhcCC-CeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCc
Q 009948 11 IHLVTSTESPEFTHLARALSQS-SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPL 89 (522)
Q Consensus 11 i~~I~t~~~~el~~l~~~L~~~-~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~ 89 (522)
+.+|++ .+++..+++.+... +.||||+||.+... +.+.+++|||++. ++.+|+||...+..
T Consensus 18 ~~~I~t--~e~L~~~~~~L~~~~~~vavDtE~~~~~~---~~~~l~liQla~~-------------~~~~~lid~l~~~~ 79 (440)
T 3cym_A 18 PNVIDT--LPAFRDYCSELASSHGSLAADAERASGFR---YGHEDWLVQFKRD-------------GAGIGLLDPQALAA 79 (440)
T ss_dssp CCEECS--HHHHHHHHHHHHSCEEEEEEEEEECTTTS---SSCCEEEEEEEEE-------------TTEEEEECHHHHHH
T ss_pred CEeeCC--HHHHHHHHHHHHhcCCeEEEEeeecCCCC---CCCCEEEEEEEEC-------------CCcEEEEEcCCccc
Confidence 357877 78899999988776 88999999987653 5678999999985 35688888632100
Q ss_pred -hhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHH
Q 009948 90 -PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANIC 168 (522)
Q Consensus 90 -~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~ 168 (522)
...+..|+++|+|+ .||||++++|+.+|. .+|+ . ..++|| |++|+|++++ . ++||+.|+
T Consensus 80 ~~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi---~-----~~~~fD-t~lAa~lL~~-------~-~~gL~~L~ 139 (440)
T 3cym_A 80 AGADWNDFNRAVGDA--VWILHDSLQDLPGFD-ELGM---E-----PQRLFD-TEIAARLLGL-------K-RFGLAAVT 139 (440)
T ss_dssp TTCCHHHHHHHHTTC--EEEESSHHHHHHHHH-HHTC---C-----CCEEEE-HHHHHHHTTC-------S-SCSHHHHH
T ss_pred cccCHHHHHHHHCCC--CEEEEcCHHHHHHHH-HcCC---c-----CCceeh-HHHHHHHhCC-------C-CCCHHHHH
Confidence 01256899999997 699999999999997 5654 2 358999 8999999986 2 78999999
Q ss_pred HHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccchhhcccCcc---CCCCCCCc
Q 009948 169 KELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS---CSSISELDSSNL---DLGLKGIL 242 (522)
Q Consensus 169 ~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~---~~~~~~~~~~~~---~~~~~~~~ 242 (522)
+.+||..++|+.+.+||..|||+++|+.|||.||++++.||+.|.++|.+.|.+ .+||..+..... ......|+
T Consensus 140 ~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~~~~~~~~~~~~~~~ 219 (440)
T 3cym_A 140 EHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGPRKEHLIPWM 219 (440)
T ss_dssp HHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSSCCCCSSGGG
T ss_pred HHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhccccccCCCchHHHH
Confidence 999999999999999999999999999999999999999999999999999987 678888754222 23345666
Q ss_pred ccCCCCCcchhh-hhhhHHHHHHHhhc
Q 009948 243 EKPDIGNKTVRF-KLCEALDIIRATSY 268 (522)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 268 (522)
+..+.+ +. +.++++++++++..
T Consensus 220 ~~~~~~----~l~~~~~~l~~~~~L~~ 242 (440)
T 3cym_A 220 HVSHIT----EVMRDRQALAIVRALWT 242 (440)
T ss_dssp CCTTGG----GGTTCHHHHHHHHHHHH
T ss_pred Hhcccc----ccCCCHHHHHHHHHHHH
Confidence 544332 22 35788999988843
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.68 E-value=7e-16 Score=170.61 Aligned_cols=180 Identities=18% Similarity=0.185 Sum_probs=143.1
Q ss_pred CccEEEEcCCChHHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCC-
Q 009948 8 PLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS- 86 (522)
Q Consensus 8 ~~~i~~I~t~~~~el~~l~~~L~~~~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~- 86 (522)
+.+|.+|++ .+++.++++.+...+.|+||+|+++..+ +.+++..||++.. .+.+++|++..
T Consensus 4 ~~~y~~I~~--~~~l~~~~~~l~~~~~va~DtEttgl~~---~~~~iv~I~~~~~-------------~g~~~yip~~~~ 65 (605)
T 2kfn_A 4 YDNYVTILD--EETLKAWIAKLEKAPVFAFDTETDSLDN---ISANLVGLSFAIE-------------PGVAAYIPVAHD 65 (605)
T ss_dssp SSSSEECCS--HHHHHHHHHHHHTSSSEEEEEEESCSCT---TTCCEEEEEEEEE-------------TTEEEEEECCCC
T ss_pred hhheEEecC--HHHHHHHHHhcccCCeEEEEEecCCCCc---ccCceEEEEEEEc-------------CCcEEEEecccc
Confidence 345778887 7889899998877788999999998764 4567888888863 24566664322
Q ss_pred -------CCchhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCc
Q 009948 87 -------IPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPK 159 (522)
Q Consensus 87 -------l~~~~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~ 159 (522)
+...+++..|+++|+++++.||+||+++|+..|.+ +|+ . ..+.+|| |++++|+++++ .
T Consensus 66 ~~~~~~~l~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~-~Gi---~----l~~~~~D-T~laayLL~p~------~ 130 (605)
T 2kfn_A 66 YLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILAN-YGI---E----LRGIAFD-TMLESYILNSV------A 130 (605)
T ss_dssp STTCCCCCCHHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHT-TTC---C----CCCEEEE-HHHHHHHHCTT------S
T ss_pred ccccccccCHHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHH-CCC---C----CCCcccc-HHHHHHHhCCC------C
Confidence 22245677899999999999999999999999987 454 2 1245899 99999999985 3
Q ss_pred CcccHHHHHHHHcCCccc-------cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Q 009948 160 ETKSLANICKELLDISLS-------KELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ-KGN 221 (522)
Q Consensus 160 ~~~gL~~L~~~~Lg~~L~-------K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~-~g~ 221 (522)
.+++|+.|++++||.... |+.+.++|..+|+ +++..||+.||.++++|+..|.++|++ .|.
T Consensus 131 ~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l 199 (605)
T 2kfn_A 131 GRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGP 199 (605)
T ss_dssp SCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 479999999999987753 5556678988888 679999999999999999999999987 554
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.58 E-value=7e-15 Score=161.52 Aligned_cols=156 Identities=10% Similarity=-0.027 Sum_probs=128.6
Q ss_pred CCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCceEEEEe
Q 009948 32 SSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFK 111 (522)
Q Consensus 32 ~~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lL~~~~i~KVgh~ 111 (522)
....++|+|...... +.+.++.+|++.. +++|+|++.. ......|+++|+|+++.||+||
T Consensus 29 ~~~~aldtE~~~~~~---~~a~Lvgisla~~--------------~~a~yIp~~~---~~~l~~Lk~lLed~~i~KV~hn 88 (592)
T 3pv8_A 29 ADKAALVVEVVEENY---HDAPIVGIAVVNE--------------HGRFFLRPET---ALADPQFVAWLGDETKKKSMFD 88 (592)
T ss_dssp CSEEEEEEECCSSSC---TTCCCCEEEEEET--------------TEEEEECHHH---HTTCHHHHHHHTCTTSEEEESS
T ss_pred ccCcEEEEEEcCCcc---CcccEEEEEEEcC--------------CceEEEccch---hhHHHHHHHHHhCCCCeEEEec
Confidence 356799999887775 5678889999984 4678886532 1245689999999999999999
Q ss_pred chhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHHHHcCCccccccccCCCC---CC
Q 009948 112 FKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWS---NR 188 (522)
Q Consensus 112 ~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~~Lg~~L~K~~q~sdW~---~R 188 (522)
+|+|+..|.+ +|+ . ..+.+|| |+||+||++++ ..+++|++|+++|||..+.+.++..+|. ..
T Consensus 89 ~K~Dl~vL~~-~Gi---~----l~g~~fD-TmLAAYLL~p~------~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~ 153 (592)
T 3pv8_A 89 SKRAAVALKW-KGI---E----LCGVSFD-LLLAAYLLDPA------QGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAV 153 (592)
T ss_dssp HHHHHHHHHH-TTC---C----CCCEEEE-HHHHHHHHCGG------GCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCC
T ss_pred hHHHHHHHHH-cCC---C----CCCccch-HHHHHHHcCCC------CCCCCHHHHHHHHcCCCCchHHHhcCccccccC
Confidence 9999999987 454 1 2367999 99999999986 3479999999999999998877777775 35
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009948 189 PLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (522)
Q Consensus 189 PL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~ 222 (522)
|..+.+..|||.||.++++|++.|.++|++.+++
T Consensus 154 ~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~ 187 (592)
T 3pv8_A 154 PDEPVLAEHLVRKAAAIWELERPFLDELRRNEQD 187 (592)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 5668889999999999999999999999998775
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.35 E-value=8e-13 Score=148.37 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=120.6
Q ss_pred eEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCceEEEEec-
Q 009948 34 LVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF- 112 (522)
Q Consensus 34 ~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lL~~~~i~KVgh~~- 112 (522)
+|+||+|+++... +..+++++|++... .+.++++|+..+ ++.++.|+++|+ +++.||+||+
T Consensus 1 ~vv~D~ETtGl~~---~~d~i~~iqi~~~~------------~~~~~~~~p~~i--~~~l~~L~~~l~-~~~~kV~HNa~ 62 (698)
T 1x9m_A 1 MIVSDIEANALLE---SVTKFHCGVIYDYS------------TAEYVSYRPSDF--GAYLDALEAEVA-RGGLIVFHNGH 62 (698)
T ss_dssp CEEEEEEESSCGG---GCCCEEEEEEEETT------------TTEEEEECGGGH--HHHHHHHHHHHH-TTCCEEESSTT
T ss_pred CEEEEcCCCCcCC---CCCEEEEEEEEecC------------CCcEEEEChHHH--HHHHHHHHHHHh-cCCeEEEcCCh
Confidence 4899999998875 56799999998741 357888886533 346788999999 8999999999
Q ss_pred hhhHHHHHhhc------ccCCCccCccCC-CceeeHHHHHHHhhccccCCCCCcCcccHHHHHHHHc-------CCcc--
Q 009948 113 KQDLIYLSSTF------CSQGCDIGFDRV-EPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELL-------DISL-- 176 (522)
Q Consensus 113 k~Dl~~L~~~~------gi~g~~~~~~~~-~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~~L-------g~~L-- 176 (522)
++|+.+|.+.+ |+ . .. +.+|| |++++|++++. ..+++|++|++++| |..+
T Consensus 63 kfD~~~L~~~~~~~~~~Gi-~------l~~~~~~D-TmlaayLL~p~------~~~~~L~~La~~~L~~sL~~~g~~lg~ 128 (698)
T 1x9m_A 63 KYDVPALTKLAKLQLNREF-H------LPRENCID-TLVLSRLIHSN------LKDTDMGLLRSGKLPGALEAWGYRLGE 128 (698)
T ss_dssp TTHHHHHHHHHHHHHCCCC-C------CCGGGEEE-HHHHHHHHTTT------SCCCTTTTSCGGGSCSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCc-c------CCCCcchh-HHHHHHHhCCC------CCCCCHHHHHHHHcccchhhhcccccc
Confidence 99999998753 44 1 12 57999 99999999985 34789999999998 4333
Q ss_pred ---c-----------cccc--c-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009948 177 ---S-----------KELQ--C-SDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (522)
Q Consensus 177 ---~-----------K~~q--~-sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~ 221 (522)
+ |+.+ . ++|.. +++.+..||+.||.++++|++.|.++|++.+.
T Consensus 129 ~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 129 MKGEYKDDFKRMLEEQGEEYVDGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred cccCHHHHhCcccccccccccccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 2221 1 27864 66889999999999999999999998887765
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.80 E-value=5.1e-09 Score=113.82 Aligned_cols=123 Identities=11% Similarity=0.005 Sum_probs=98.6
Q ss_pred CeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCceEEEEec
Q 009948 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (522)
Q Consensus 33 ~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lL~~~~i~KVgh~~ 112 (522)
+.+++|+|...... +...++++|++.. +.+|+++ .....|+++|+| +.||+||+
T Consensus 11 ~~valDtE~~~~~~---~~a~Lvgi~la~~--------------~~a~~i~-------~~l~~l~~~l~d--~~kV~hn~ 64 (540)
T 4dfk_A 11 EGAFVGFVLSRKEP---MWADLLALAAARG--------------GRVHRAP-------EPYKALRDLKEA--RGLLAKDL 64 (540)
T ss_dssp TTCEEEEEESSSCT---TTCCEEEEEEEET--------------TEEEECS-------SHHHHHTTCSSB--CSTTHHHH
T ss_pred CceEEEEEecCCcc---CcccEEEEEEEcC--------------CEEEEeh-------hhHHHHHHHHcC--CCEEEecc
Confidence 44999999988775 5678889999963 5778765 256789999998 88999999
Q ss_pred hhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHHHHcCCccccccccCCCCCCCCCH
Q 009948 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (522)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~~Lg~~L~K~~q~sdW~~RPL~~ 192 (522)
|+|+. + +|+ . . ..+|| |++++||+++ . +++|++|+++|++. |..
T Consensus 65 K~Dl~---~-~Gi---~----~-~~~fD-T~laAyLL~p-------~-~~~L~~La~~yl~~----------~gk----- 108 (540)
T 4dfk_A 65 SVLAL---R-EGL---G----L-PPGDD-PMLLAYLLDP-------S-NTTPEGVARRYGGE----------WTE----- 108 (540)
T ss_dssp HHHHH---H-TTC---C----C-CBCCC-HHHHHHHHCT-------T-CCCHHHHHHHHTSC----------CCS-----
T ss_pred HHHHH---H-cCC---C----C-Cccee-HHHHHHHhCC-------C-CCCHHHHHHHHhhh----------hcc-----
Confidence 99999 3 344 2 1 27899 9999999997 3 78999999999986 211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Q 009948 193 EQKNYAAIDAHCLIEIFNIFQVKV-AQKGN 221 (522)
Q Consensus 193 ~qi~YAA~DA~~ll~L~~~L~~~L-~~~g~ 221 (522)
+|+.||.++++||+.|.++| ++.++
T Consensus 109 ----~a~~DA~~t~~L~~~L~~~L~~~~~~ 134 (540)
T 4dfk_A 109 ----EAGERAALSERLFANLWGRLEGEERL 134 (540)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----chHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 37799999999999999999 55444
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.16 E-value=1.7e-05 Score=76.77 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=100.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCE-----E--EEEeCC---C--
Q 009948 19 SPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASV-----V--FLLDLS---S-- 86 (522)
Q Consensus 19 ~~el~~l~~~L~~~~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~-----v--~liD~~---~-- 86 (522)
.+++..+...+.....|+||+|+++..+ . ...+|+|+... .+. +.++. . .++.+. .
T Consensus 24 ~~~~~~l~~~l~~~~~vviD~ETTGl~~---~--~~~IieIgav~-~~~------~~~g~i~~~~~f~~~v~P~~~~~i~ 91 (235)
T 3v9w_A 24 NAQLTGLCDRFRGFYPVVIDVETAGFNA---K--TDALLEIAAIT-LKM------DEQGWLMPDTTLHFHVEPFVGANLQ 91 (235)
T ss_dssp -----CHHHHTTTEEEEEEEEEESSSCT---T--TBCEEEEEEEE-EEE------CTTSCEEEEEEEEEEBCCCTTCBCC
T ss_pred cccccCchhcccCCcEEEEEEeCCCCCC---C--CCeEEEEEEEE-EEE------cCCCcccccceEEEEECCCCCCCCC
Confidence 3566777788888889999999998764 1 33466665431 000 00011 1 123331 0
Q ss_pred --------CC----------chhhHHHHHHhhCC-------CCceEEEEechhhHHHHHhhcccCCCcc-CccCCCceee
Q 009948 87 --------IP----------LPSIWELLKELFVS-------PDILKLGFKFKQDLIYLSSTFCSQGCDI-GFDRVEPYLD 140 (522)
Q Consensus 87 --------l~----------~~~~~~~L~~lL~~-------~~i~KVgh~~k~Dl~~L~~~~gi~g~~~-~~~~~~~~~D 140 (522)
+. ..+++..|.+++.+ .+.+.||||+++|+..|...+...|+.. .| ....++|
T Consensus 92 ~~~~~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~-~~~~~~D 170 (235)
T 3v9w_A 92 PEALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPF-HPFATFD 170 (235)
T ss_dssp HHHHHHHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCE-EEEEEEE
T ss_pred HHHHHHhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCC-CCCcEEE
Confidence 11 11244555555542 4678899999999999876543223210 00 0135789
Q ss_pred HHHHHHHhhccccCCCCCcCcccHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009948 141 ITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKG 220 (522)
Q Consensus 141 lt~La~yLl~~~~~~~~~~~~~gL~~L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g 220 (522)
|+.+++.+.+ ..+|..|++.+ |++... .+.++|..||.++.+|+..|.+++.+.|
T Consensus 171 -t~~la~~~~p---------~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~ 225 (235)
T 3v9w_A 171 -TAALAGLALG---------QTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLG 225 (235)
T ss_dssp -HHHHHHHHHS---------CCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHhC---------CCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777777764 35899999876 554321 1235699999999999999999999887
Q ss_pred CC
Q 009948 221 NS 222 (522)
Q Consensus 221 ~~ 222 (522)
.+
T Consensus 226 ~~ 227 (235)
T 3v9w_A 226 GW 227 (235)
T ss_dssp CS
T ss_pred Cc
Confidence 75
No 12
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=97.78 E-value=3.3e-05 Score=88.01 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=88.1
Q ss_pred CeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCceEEEEec
Q 009948 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (522)
Q Consensus 33 ~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lL~~~~i~KVgh~~ 112 (522)
+.+++|+|..+ . ....+| +++|.. ++.++++++ . + +.|+++|+++.+ |+
T Consensus 305 ~~va~d~et~~-~----~~~~l~-vg~a~~-------------~g~a~yvp~-~----~--~~Lk~lLed~~i-----n~ 353 (832)
T 1bgx_T 305 AFVGFVLSRKE-P----MWADLL-ALAAAR-------------GGRVHRAPE-P----Y--KALRDLKEARGL-----LA 353 (832)
T ss_dssp CCBEEECSSSC-T----TTCCCC-EEECBS-------------SSEEECCSC-H----H--HHHHHCSSBCBT-----TH
T ss_pred ceEEEEEecCC-c----ccCcee-EEEEEc-------------CCCEEEEEC-C----H--HHHHHHHhCCCC-----Ch
Confidence 45788888655 2 123332 666663 356777654 1 1 579999999987 99
Q ss_pred hhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHHHHcCCccccccccCCCCCCCCCH
Q 009948 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (522)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~~Lg~~L~K~~q~sdW~~RPL~~ 192 (522)
|.|++.|.+ +|+ . +..++| |+|++||+++. .++|++|++++ |. +|. +
T Consensus 354 K~d~~~L~~-~Gi---~-----~~~~~D-t~laayLl~p~--------~~~l~~l~~~~-gk---------~~~-----~ 400 (832)
T 1bgx_T 354 KDLSVLALR-EGL---G-----LPPGDD-PMLLAYLLDPS--------NTTPEGVARRY-GG---------EWT-----E 400 (832)
T ss_dssp HHHHHHHHH-HTC---C-----CCBCCC-HHHHHHHHCTT--------CCSTTHHHHHH-SC---------CCC-----S
T ss_pred HHHHHHHHH-cCC---c-----cCcccC-HHHHHHHcCCC--------CCCHHHHHHHh-CC---------Cch-----H
Confidence 999999987 455 2 237799 99999999972 68999999999 32 231 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCC
Q 009948 193 EQKNYAAIDAHCLIEIFNIFQVKVA-QKGN 221 (522)
Q Consensus 193 ~qi~YAA~DA~~ll~L~~~L~~~L~-~~g~ 221 (522)
+ || .||.++++|++.|.++|. +.++
T Consensus 401 -~--ya-~da~~~~~l~~~l~~~L~~~~~~ 426 (832)
T 1bgx_T 401 -E--AG-ERAALSERLFANLWGRLEGEERL 426 (832)
T ss_dssp -S--HH-HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -H--HH-HHHHHHHHHHHHHHHHHhhhhhh
Confidence 1 88 799999999999999998 5543
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.33 E-value=0.0015 Score=60.65 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=65.0
Q ss_pred hhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHHH
Q 009948 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (522)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~ 170 (522)
+++..|..++.+. +.||||..+|+..|.+.+...|+.+ ....++|+..++..+. . ..+++|.++++.
T Consensus 81 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~---~~~~~iDt~~l~~~~~-~-------~~~~~L~~l~~~ 147 (186)
T 2p1j_A 81 EVLPEFLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLD---WERPYIDTLALAKSLL-K-------LRSYSLDSVVEK 147 (186)
T ss_dssp HHHHHHHHHSSSC--EEEETTHHHHHHHHHHHHHHHHCCC---CCCCEEEHHHHHHHHT-C-------CSCCSHHHHHHH
T ss_pred HHHHHHHHHHCCC--EEEEECcHHHHHHHHHHHHHcCCCC---CCCCEEeHHHHHHHHh-h-------cCCCCHHHHHHH
Confidence 4556677778753 5699999999999875432223221 1246889545555544 2 247899999986
Q ss_pred HcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009948 171 LLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKG 220 (522)
Q Consensus 171 ~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g 220 (522)
+|++... .+.|..||.++.+|+..+.++..++|
T Consensus 148 -~gi~~~~----------------~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 148 -LGLGPFR----------------HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp -TTCCSTT----------------CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred -cCCCCCC----------------CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5766421 24589999999999998876555444
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.30 E-value=0.0032 Score=58.68 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=67.3
Q ss_pred hhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHh---hccccCCCCCcCcccHHHH
Q 009948 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHL---HHKQLGRKLPKETKSLANI 167 (522)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yL---l~~~~~~~~~~~~~gL~~L 167 (522)
+++..|.+++.+ .+.||||+.+|+..|...++ ...++|+..++... ..+. ...++|+.+
T Consensus 72 ~v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~~----------~~~~idt~~~~~~~~~~~~p~------~~~~~L~~l 133 (189)
T 1wlj_A 72 VARLEILQLLKG--KLVVGHDLKHDFQALKEDMS----------GYTIYDTSTDRLLWREAKLDH------CRRVSLRVL 133 (189)
T ss_dssp HHHHHHHHHHTT--SEEEESSHHHHHHHTTCCCT----------TCEEEEGGGCHHHHHHHTC-----------CCHHHH
T ss_pred HHHHHHHHHHCC--CEEEECCcHHHHHHHHHhCC----------CCceechHhhhhhhhcccCCC------CCCccHHHH
Confidence 456677788864 46799999999999976431 13578943332211 1111 247899999
Q ss_pred HHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009948 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (522)
Q Consensus 168 ~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~ 221 (522)
+++++|++...+.+. +-|..||.++.+|+..+.+++++.+.
T Consensus 134 ~~~~lgi~~~~~~~~-------------H~Al~Da~ata~l~~~l~~~~~~~~~ 174 (189)
T 1wlj_A 134 SERLLHKSIQNSLLG-------------HSSVEDARATMELYQISQRIRARRGL 174 (189)
T ss_dssp HHHHTCCCCSCCTTC-------------CCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCCCCC-------------cCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999876432111 23889999999999999998887654
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=96.67 E-value=0.019 Score=54.65 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=61.6
Q ss_pred CceEEEEechhhHHHHHhhcccCCCc--cCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHHHHcCCccccccc
Q 009948 104 DILKLGFKFKQDLIYLSSTFCSQGCD--IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQ 181 (522)
Q Consensus 104 ~i~KVgh~~k~Dl~~L~~~~gi~g~~--~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~~Lg~~L~K~~q 181 (522)
..+.||||...|+..|.+.+...|+. | | ....++|+..++..+. + ..+|..+++. +|+++....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p-~-~~~~~iDt~~l~~~~~-~---------~~~L~~l~~~-~gi~~~~~~- 191 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNP-F-HPFSSFDTATLAGLAY-G---------QTVLAKACQA-AGMEFDNRE- 191 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCC-E-EEEEEEEHHHHHHHHH-S---------CCSHHHHHHH-TTCCCCTTS-
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCC-c-cccceeeHHHHHHHHc-C---------CCCHHHHHHH-cCCCcCCCC-
Confidence 45679999999999987654322321 1 0 0135789545555443 2 3589999886 587653111
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009948 182 CSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (522)
Q Consensus 182 ~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~g~~ 222 (522)
.+.|..||.++.+|+..+.+++.+.|.+
T Consensus 192 -------------~H~Al~Da~~ta~l~~~l~~~~~~~~~~ 219 (224)
T 2f96_A 192 -------------AHSARYDTEKTAELFCGIVNRWKEMGGW 219 (224)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------------CCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1238899999999999999999887665
No 16
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=95.41 E-value=0.062 Score=51.42 Aligned_cols=110 Identities=17% Similarity=0.194 Sum_probs=67.8
Q ss_pred hhHHHHHHhhCCC--CceEEEEec-hhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccc-CCCCC-cCcccHH
Q 009948 91 SIWELLKELFVSP--DILKLGFKF-KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQL-GRKLP-KETKSLA 165 (522)
Q Consensus 91 ~~~~~L~~lL~~~--~i~KVgh~~-k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~-~~~~~-~~~~gL~ 165 (522)
++...|..++..- ..+.|+||. .+|+..|.+.+.-.|+. +.....++|+..++..+..... ....| ..+++|.
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~--~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~ 175 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGAR--LPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLG 175 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCC--CCTTCEEEEHHHHHHHHHHHC----------CCSHH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCC--CCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHH
Confidence 3456777888762 256799999 99999987654322322 1111357994455555541000 00001 2478999
Q ss_pred HHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009948 166 NICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (522)
Q Consensus 166 ~L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~ 218 (522)
.++++++|++... .+.|..||.++.+|+..+.+++.+
T Consensus 176 ~l~~~~~gi~~~~----------------~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 176 SLFHRYFRAEPSA----------------AHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HHHHHHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhCCCCcc----------------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888876421 245899999999999998876653
No 17
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=95.08 E-value=0.073 Score=51.48 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=68.8
Q ss_pred hhHHHHHHhhCC--CCceEEEEec-hhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCC-CCCcCcccHHH
Q 009948 91 SIWELLKELFVS--PDILKLGFKF-KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGR-KLPKETKSLAN 166 (522)
Q Consensus 91 ~~~~~L~~lL~~--~~i~KVgh~~-k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~-~~~~~~~gL~~ 166 (522)
+++..|..++.+ +..+.|+||. .+|+..|.+.+.-.|+...+ ....++|+..++..+....... .....+++|++
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~-~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~ 181 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHHHHCC------CCCSHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCc-cCCeEeehHHHHHHHHhhcCccccCCCCCcCHHH
Confidence 456677777776 2246699995 99999987654333432100 1125789555555444210000 00135789999
Q ss_pred HHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (522)
Q Consensus 167 L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~ 217 (522)
++++++|++.... +-|..||.++.+|+..+.+++.
T Consensus 182 l~~~~~gi~~~~~----------------H~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 182 IYTRLYWQAPTDS----------------HTAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHHHHHSSCCSST----------------TSHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHhCCCCCCC----------------cChHHHHHHHHHHHHHHHHHHH
Confidence 9999999876432 2288999999999887776554
No 18
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=94.70 E-value=0.48 Score=50.53 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=63.1
Q ss_pred hhHHHHHHhhCCCCceEEEEe-chhhHHHHHhhcccCCCccCccC----CCceeeHHHHHHHhhc--cccCCCC-----C
Q 009948 91 SIWELLKELFVSPDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDR----VEPYLDITSIYNHLHH--KQLGRKL-----P 158 (522)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~-~k~Dl~~L~~~~gi~g~~~~~~~----~~~~~Dlt~La~yLl~--~~~~~~~-----~ 158 (522)
++...|..++..++.+.|||| +.+|...|...+.-.|+.+ +.. ....+|+..++..+.. +. +..- .
T Consensus 83 evl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~-~~~~w~~~~~~iDtl~l~r~~~~~~~~-~~~wP~~~~~ 160 (482)
T 2qxf_A 83 AFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP-YAWSWQHDNSRWDLLDVMRACYALRPE-GINWPENDDG 160 (482)
T ss_dssp HHHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCS-SGGGTGGGCEEEEHHHHHHHHHHHCCT-TSCCCBCTTS
T ss_pred HHHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCc-cccccccCCceeeHHHHHHHHHHhCcc-cccCcccccC
Confidence 345566777875566789999 8999998875433223221 110 0457785556554431 10 0000 1
Q ss_pred cCcccHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 159 KETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (522)
Q Consensus 159 ~~~~gL~~L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~ 215 (522)
..+++|..+++. +|++.... +-|..||.++.+|+..+.+.
T Consensus 161 ~~s~kL~~L~~~-~Gi~~~~a----------------HrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 161 LPSFRLEHLTKA-NGIEHSNA----------------HDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp SBCCCHHHHHHH-TTCCCC-------------------CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-cCCCCCCC----------------CCHHHHHHHHHHHHHHHHHh
Confidence 246899999875 47654221 23778999999998887643
No 19
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=94.62 E-value=0.11 Score=48.09 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=62.5
Q ss_pred hhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCc-cCccCCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHH
Q 009948 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCD-IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (522)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~-~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~ 169 (522)
+++..|..++.+. ..||||..+|+..|...+.-.|+. |.|.....++|+..++..+ .+. ...+|.++++
T Consensus 84 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~-~p~-------~~~~L~~l~~ 153 (194)
T 2gui_A 84 EVADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKM-FPG-------KRNSLDALCA 153 (194)
T ss_dssp HHHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHH-STT-------SCCSHHHHHH
T ss_pred HHHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHH-cCC-------CCCCHHHHHH
Confidence 4556677788754 458999999999987644322332 1111014689944455443 332 3579999998
Q ss_pred HHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 170 ~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (522)
. +|++.... .. +-|..||.++.+|+..+..
T Consensus 154 ~-~gi~~~~~-~~-------------H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 154 R-YEIDNSKR-TL-------------HGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp H-TTCCCTTC-SS-------------CCHHHHHHHHHHHHHHHTC
T ss_pred H-cCcCCCCC-CC-------------CChHHHHHHHHHHHHHHHh
Confidence 6 57665311 01 2288999999999988764
No 20
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=94.06 E-value=0.2 Score=50.42 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=68.4
Q ss_pred hhHHHHHHhhCC--CCceEEEEe-chhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccC-CCCCcCcccHHH
Q 009948 91 SIWELLKELFVS--PDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLG-RKLPKETKSLAN 166 (522)
Q Consensus 91 ~~~~~L~~lL~~--~~i~KVgh~-~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~-~~~~~~~~gL~~ 166 (522)
+++..|.+++.+ +..+.|+|| +.+|+..|.+.+.-.|+...+ ....++|...++..+...... ......+++|++
T Consensus 103 ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~-~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~ 181 (314)
T 3u3y_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (314)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHTTC-------CCCCSHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC-CCceEEeHHHHHHHHHHHhCccccccCCCCCHHH
Confidence 455667777776 225679999 899999997654333432100 112478943334434321100 001125789999
Q ss_pred HHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (522)
Q Consensus 167 L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~ 217 (522)
++++++|++....+ -|..||.++.+|+..+.+++.
T Consensus 182 L~~~l~gi~~~~aH----------------rAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 182 IYTRLYWQAPTDSH----------------TAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HHHHHHSSCCSCSS----------------SHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHhcCCCCCCCC----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 99998898764322 288999999999988776664
No 21
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=91.90 E-value=0.54 Score=43.52 Aligned_cols=100 Identities=9% Similarity=0.074 Sum_probs=61.7
Q ss_pred hHHHHHHhhCCCC-----ceEEEEechhhHH-HHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccHH
Q 009948 92 IWELLKELFVSPD-----ILKLGFKFKQDLI-YLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLA 165 (522)
Q Consensus 92 ~~~~L~~lL~~~~-----i~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~ 165 (522)
++..|..++.+.. ...|+||...|+. .|.+.+...|+.. ......++|+..++..+.... ...++|+
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~-p~~~~~~~dt~~l~~~~~~~~------~~~~~L~ 160 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKY-PPFAKKWINIRKSYGNFYKVP------RSQTKLT 160 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCC-CGGGSEEEEHHHHHHHHHTCC------GGGCSHH
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCC-cccccceEEHHHHHHHHhCCC------CccchHH
Confidence 4555666666532 3469999999996 8865433223221 000136899656665554321 2357999
Q ss_pred HHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 166 NICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 166 ~L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (522)
++++. +|++... +. +-|..||.++.+|+..+.+
T Consensus 161 ~l~~~-~gi~~~~--~~-------------H~Al~Da~~ta~l~~~l~~ 193 (204)
T 1w0h_A 161 IMLEK-LGMDYDG--RP-------------HCGLDDSKNIARIAVRMLQ 193 (204)
T ss_dssp HHHHH-TTCCCCS--CT-------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-cCCCCCC--Cc-------------cCcHHHHHHHHHHHHHHHH
Confidence 99977 5766531 01 2288999999999988864
No 22
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=89.96 E-value=0.28 Score=44.44 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=22.5
Q ss_pred ChHHHHHhhhcCCcEEEecChhHHHhhh
Q 009948 388 EPRELIDQTSKEKRVLLTRDAKLLRHQY 415 (522)
Q Consensus 388 ~d~~ll~~A~~E~RiiLTrd~~l~~~~~ 415 (522)
.|..++.+|.+.+.+|+|.|..+-+.+.
T Consensus 85 ~D~~lIaLA~~l~~~lvT~D~~l~~vA~ 112 (165)
T 2lcq_A 85 ADIEVLALAYELKGEIFSDDYNVQNIAS 112 (165)
T ss_dssp HHHHHHHHHHHHTCCEECCCHHHHHHHH
T ss_pred HHHHHHHhHHHhCCeEEcCcHHHHHHHH
Confidence 4778999999999999999987654443
No 23
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=87.42 E-value=7.2 Score=43.87 Aligned_cols=162 Identities=13% Similarity=0.172 Sum_probs=89.6
Q ss_pred CCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCC------C-CchhhHHHHHHhhC--C
Q 009948 32 SSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS------I-PLPSIWELLKELFV--S 102 (522)
Q Consensus 32 ~~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~------l-~~~~~~~~L~~lL~--~ 102 (522)
-.+++||.|..+... .....-.+++|+... ..+..++...... . ...+++..+..++. |
T Consensus 135 l~ilsfDIEt~~~~~--p~~~~d~Ii~Is~~~----------~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~d 202 (775)
T 1qht_A 135 LTMLAFAIATLYHEG--EEFGTGPILMISYAD----------GSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKD 202 (775)
T ss_dssp CCEEEEEEEECCCTT--CCTTCSCEEEEEEEC----------SSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHC
T ss_pred cEEEEEEEEEcCCCC--CCCCCCcEEEEEEEe----------cCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcC
Confidence 368999999986221 011223467776542 0112322211100 1 11234555545444 6
Q ss_pred CCceEEEEech-hhHHHHHhhcccCCCccCccC-------------------CCceeeHHHHHHHhhccccCCCCCcCcc
Q 009948 103 PDILKLGFKFK-QDLIYLSSTFCSQGCDIGFDR-------------------VEPYLDITSIYNHLHHKQLGRKLPKETK 162 (522)
Q Consensus 103 ~~i~KVgh~~k-~Dl~~L~~~~gi~g~~~~~~~-------------------~~~~~Dlt~La~yLl~~~~~~~~~~~~~ 162 (522)
|++ .+|||.. +|+..|......+|+...+.+ -...+|+-.++..... ..++
T Consensus 203 PDi-ivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~--------l~sy 273 (775)
T 1qht_A 203 PDV-LITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTIN--------LPTY 273 (775)
T ss_dssp CSE-EEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSC--------CSCC
T ss_pred CCE-EEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcC--------cCcC
Confidence 775 4899986 599887543222233211100 1236796666555432 2478
Q ss_pred cHHHHHHHHcCCcccc--ccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 163 SLANICKELLDISLSK--ELQCS-DWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 163 gL~~L~~~~Lg~~L~K--~~q~s-dW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (522)
+|.++++.+||..... ..+.. -|...+-...-+.|...||..++.|+..+..
T Consensus 274 sL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 274 TLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp CHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999975321 11122 3554442256789999999999999877654
No 24
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=86.62 E-value=2.7 Score=41.57 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=62.2
Q ss_pred hhHHHHHHhhCCC-----CceEEEEechhhHH-HHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccH
Q 009948 91 SIWELLKELFVSP-----DILKLGFKFKQDLI-YLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (522)
Q Consensus 91 ~~~~~L~~lL~~~-----~i~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL 164 (522)
+++..|..++.+. ..+.|+||...|+. .|...+...|+..- .....++|+..++..+.+.. ...++|
T Consensus 155 evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p-~~~~~~iDt~~l~~~~~~~~------~~~~~L 227 (299)
T 1zbh_A 155 QVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP-PFAKKWINIRKSYGNFYKVP------RSQTKL 227 (299)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCC-GGGSEEEEHHHHHHHHHTCC------GGGCSH
T ss_pred HHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCC-cccchHHHHHHHHHHHhCCC------CCCccH
Confidence 3455666677653 14569999999999 88654322232200 01136889555555443211 135899
Q ss_pred HHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 165 ANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 165 ~~L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (522)
.+|++. +|++... .. +-|..||.++.+|+..+.+
T Consensus 228 ~~l~~~-~gi~~~g--~~-------------H~Al~DA~ata~l~~~l~~ 261 (299)
T 1zbh_A 228 TIMLEK-LGMDYDG--RP-------------NCGLDDSKNIARIAVRMLQ 261 (299)
T ss_dssp HHHHHH-TTCCCCS--CT-------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCC--CC-------------CChHHHHHHHHHHHHHHHH
Confidence 999976 5766431 01 2288999999999988764
No 25
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.11 E-value=0.53 Score=34.14 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=13.1
Q ss_pred CceeecCCCCeeEec
Q 009948 489 LQFWQCMDCNQLYWE 503 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~ 503 (522)
..-+.|+.||-+||.
T Consensus 35 ~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 35 GDRWACGKCGYTEWK 49 (50)
T ss_dssp SSEEECSSSCCEEEC
T ss_pred CCeEECCCCCCEEEC
Confidence 457899999999997
No 26
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=84.77 E-value=3.7 Score=41.70 Aligned_cols=101 Identities=10% Similarity=0.078 Sum_probs=62.2
Q ss_pred hhHHHHHHhhCCC-----CceEEEEechhhHH-HHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCcccH
Q 009948 91 SIWELLKELFVSP-----DILKLGFKFKQDLI-YLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (522)
Q Consensus 91 ~~~~~L~~lL~~~-----~i~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL 164 (522)
+++..|..++.+. ..+.|+||...|+. .|...+...|+..- .....++|+..++..+.... ...++|
T Consensus 205 eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p-~~~~~~iDt~~l~~~~~~~~------~~~~~L 277 (349)
T 1zbu_A 205 QVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYP-PFAKKWINIRKSYGNFYKVP------RSQTKL 277 (349)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCC-GGGSEEEEHHHHHHHHHTCC------GGGGSH
T ss_pred HHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCc-cccchHHHHHHHHHHHhcCC------CCCCCH
Confidence 3455566677653 13569999999999 88654322232200 01236889655555443211 235899
Q ss_pred HHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 165 ANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 165 ~~L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (522)
..|++. +|++... .. +-|..||.++.+|+..+..
T Consensus 278 ~~l~~~-~gi~~~g--~~-------------HrAl~DA~ata~ll~~ll~ 311 (349)
T 1zbu_A 278 TIMLEK-LGMDYDG--RP-------------HCGLDDSKNIARIAVRMLQ 311 (349)
T ss_dssp HHHHHH-TTCCCCS--CT-------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCC--CC-------------CCHHHHHHHHHHHHHHHHH
Confidence 999876 5766431 01 2288999999999988764
No 27
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=84.24 E-value=18 Score=41.12 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=88.7
Q ss_pred CCCeEEEEEEE-eCC---CCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC----------------Cch
Q 009948 31 QSSLVGLDAEW-KPQ---RSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI----------------PLP 90 (522)
Q Consensus 31 ~~~~Vg~D~E~-~~~---~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l----------------~~~ 90 (522)
.-.+++||.|. .+. ++. .....--++||+.... .+...++++..... ...
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~-~~~~~d~Ii~Is~~~~---------~g~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPD-SQKAEFPIISIALAGS---------DGLKKVLVLNRNDVNEGSVKLDGISVERFNTEY 258 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCC-TTTCCSCEEEEEEEET---------TSCEEEEEECSSCCCCCCEEETTEEEEEESSHH
T ss_pred CceEEEEEEEeCcCCCCCCCC-ccccCCcEEEEEEEcc---------CCCcEEEEEeCCcccccccCCCCCeEEEeCCHH
Confidence 34679999999 432 221 0111135888877420 01235666643211 123
Q ss_pred hhHHHHHHhhCCCCceEEEEech-hhHHHHHhhcccCCCcc---CccC---------CCceeeHHHHHH------Hhhcc
Q 009948 91 SIWELLKELFVSPDILKLGFKFK-QDLIYLSSTFCSQGCDI---GFDR---------VEPYLDITSIYN------HLHHK 151 (522)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~~k-~Dl~~L~~~~gi~g~~~---~~~~---------~~~~~Dlt~La~------yLl~~ 151 (522)
+++..+..++.+.+ +.+|||.. +|+..|......+|+.. .|.. ....+|+-.+.. |....
T Consensus 259 ~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~ 337 (847)
T 1s5j_A 259 ELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG 337 (847)
T ss_dssp HHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT
T ss_pred HHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccc
Confidence 56777778888877 57999986 69998854322234320 0111 123568433221 11110
Q ss_pred ccCCCCCcCcccHHHHHHHHcCCccccccccCCCCCCCCC-HHHHHHHHHHHHHHHHHHH
Q 009948 152 QLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLT-EEQKNYAAIDAHCLIEIFN 210 (522)
Q Consensus 152 ~~~~~~~~~~~gL~~L~~~~Lg~~L~K~~q~sdW~~RPL~-~~qi~YAA~DA~~ll~L~~ 210 (522)
...+++|.++++.+||..-..- ...|. ... ..-+.|.-.||..++.|+.
T Consensus 338 ------kl~sysL~~Va~~~Lg~~K~dv--~~~i~--~~~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 338 ------KYNEYNLDAVAKALLGTSKVKV--DTLIS--FLDVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp ------CCSSCSHHHHHHHHHCCCCC----SSCTT--TCCHHHHHHHHHHHHHHHHHTTT
T ss_pred ------ccccccHHHHHHHHhCCCCcch--hHhhh--hccHHHHHHHHHHHHHHHHHHHH
Confidence 1247899999999999642111 12232 223 5568999999999999954
No 28
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=83.20 E-value=8.6 Score=39.40 Aligned_cols=113 Identities=15% Similarity=0.182 Sum_probs=64.3
Q ss_pred hhHHHHHHhh--CCCCceEEEEech-hhHHHHHhh----ccc--------CCCc------cCcc------CCC-ceeeHH
Q 009948 91 SIWELLKELF--VSPDILKLGFKFK-QDLIYLSST----FCS--------QGCD------IGFD------RVE-PYLDIT 142 (522)
Q Consensus 91 ~~~~~L~~lL--~~~~i~KVgh~~k-~Dl~~L~~~----~gi--------~g~~------~~~~------~~~-~~~Dlt 142 (522)
+++..+..++ .||+++ +|||.. .|+..|... +|. .|-. ..+. ..+ .++|+-
T Consensus 193 ~LL~~f~~~i~~~dPDii-~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~~ 271 (388)
T 1noy_A 193 DMLMEYINLWEQKRPAIF-TGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYL 271 (388)
T ss_dssp HHHHHHHHHHHHSCCSEE-ECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHH
T ss_pred HHHHHHHHHHHHhCCcEE-EecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEHH
Confidence 3555555555 478764 899985 588776322 221 0100 0000 011 167866
Q ss_pred HHHHHhhccccCCCCCcCcccHHHHHHHHcCCcc-ccccccCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009948 143 SIYNHLHHKQLGRKLPKETKSLANICKELLDISL-SKELQCSD-WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (522)
Q Consensus 143 ~La~yLl~~~~~~~~~~~~~gL~~L~~~~Lg~~L-~K~~q~sd-W~~RPL~~~qi~YAA~DA~~ll~L~~~L 212 (522)
.++..+-... ..+++|.++++.+||..- +-..+... |. .-...-+.|...||..+++|+..+
T Consensus 272 ~~~k~~~~~~------l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~--~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 272 DLYKKFAFTN------LPSFSLESVAQHETKKGKLPYDGPINKLRE--TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp HHHHHHTCCC------CSCCSHHHHHHHHHSCCCCCCSSCGGGHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCcCc------ccCCCHHHHHHHHhCCCCCCcHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555531111 257899999999998642 11122222 32 111446899999999999999884
No 29
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=83.12 E-value=25 Score=31.32 Aligned_cols=33 Identities=15% Similarity=-0.058 Sum_probs=23.7
Q ss_pred hhHHHHHHhhCCC----CceEEEEechhhHHHHHhhc
Q 009948 91 SIWELLKELFVSP----DILKLGFKFKQDLIYLSSTF 123 (522)
Q Consensus 91 ~~~~~L~~lL~~~----~i~KVgh~~k~Dl~~L~~~~ 123 (522)
++...|.+++.+- ..+.||||+.+|+..|.+.+
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~ 119 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYM 119 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHH
Confidence 3455666777751 34669999999999998653
No 30
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.42 E-value=0.62 Score=45.33 Aligned_cols=42 Identities=17% Similarity=0.437 Sum_probs=25.9
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeEeccchhhH
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~GsH~~~ 509 (522)
.+|.-|+-.+ +.....+ |. ..+.+..||.||+|-|...+|..
T Consensus 199 ~~C~GC~~~l-----ppq~~~~-----------i~-~~~~Iv~Cp~CgRIL~~~~~~~~ 240 (256)
T 3na7_A 199 QACGGCFIRL-----NDKIYTE-----------VL-TSGDMITCPYCGRILYAEGAYES 240 (256)
T ss_dssp TBCTTTCCBC-----CHHHHHH-----------HH-HSSSCEECTTTCCEEECSCC---
T ss_pred CccCCCCeee-----CHHHHHH-----------HH-CCCCEEECCCCCeeEEeCcchhh
Confidence 5899999865 2222211 11 24678999999999777777654
No 31
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=79.75 E-value=1.2 Score=34.55 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=20.1
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
-.|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKL---S--------------------ADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEE---C--------------------TTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeE---e--------------------CCCCEEEcCCCCcEe
Confidence 479999998742 1 012355799999998
No 32
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=78.87 E-value=1.3 Score=34.27 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=20.1
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
-+|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGRLEY---H--------------------QDKQELWSRQAKLAY 36 (68)
T ss_dssp CBCSSSCCBCEE---E--------------------TTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeE---e--------------------CCCCEEEcCCCCcEe
Confidence 589999998742 1 012355799999998
No 33
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=78.83 E-value=1.2 Score=34.34 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=20.1
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
-+|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVF---D--------------------KSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEE---E--------------------TTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeE---e--------------------CCCCEEEcCCCCcEe
Confidence 479999998742 1 012355799999998
No 34
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=77.94 E-value=15 Score=42.19 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=65.1
Q ss_pred hhHHHHHHhhC--CCCceEEEEech-hhHHHHHhhcccCCCcc--CccC---------------------------C--C
Q 009948 91 SIWELLKELFV--SPDILKLGFKFK-QDLIYLSSTFCSQGCDI--GFDR---------------------------V--E 136 (522)
Q Consensus 91 ~~~~~L~~lL~--~~~i~KVgh~~k-~Dl~~L~~~~gi~g~~~--~~~~---------------------------~--~ 136 (522)
+++..+..++. ||+|+ +|||.. +|+..|....-.+|+.. .+.+ + .
T Consensus 315 eLL~~F~~~i~~~DPDII-vGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR 393 (919)
T 3iay_A 315 EMLSNWRNFIIKVDPDVI-IGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGR 393 (919)
T ss_dssp HHHHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTC
T ss_pred HHHHHHHHHHHHhCCCEE-EecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCe
Confidence 45555555553 68874 799996 69988743211122210 0000 0 1
Q ss_pred ceeeHHHHHHHhhccccCCCCCcCcccHHHHHHHHcCCcccc--ccccCC-CCCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 009948 137 PYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSK--ELQCSD-WSNRPLT-EEQKNYAAIDAHCLIEIFNIF 212 (522)
Q Consensus 137 ~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~~Lg~~L~K--~~q~sd-W~~RPL~-~~qi~YAA~DA~~ll~L~~~L 212 (522)
..+|+-.++..... ..+++|.++++.+||..... ..+..+ |...|-. ..-+.|...||..+++|+..+
T Consensus 394 ~~lDl~~~~k~~~~--------l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 394 LQLDLLQFIQREYK--------LRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEEEHHHHHHHHCC--------CSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEhHHHHHhhcC--------CCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36786555544322 35899999999999964321 112222 2222211 345789999999999999887
Q ss_pred H
Q 009948 213 Q 213 (522)
Q Consensus 213 ~ 213 (522)
.
T Consensus 466 ~ 466 (919)
T 3iay_A 466 M 466 (919)
T ss_dssp T
T ss_pred h
Confidence 3
No 35
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=77.21 E-value=1.3 Score=34.41 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=20.1
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
-+|+.|.++|.. . .....-+|+.||+.|
T Consensus 9 L~CP~ck~~L~~---~--------------------~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEF---Q--------------------RAQAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEE---E--------------------TTTTEEEETTTTEEE
T ss_pred eECCCCCCcCEE---e--------------------CCCCEEEcCCCCcee
Confidence 589999998742 1 012355799999998
No 36
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=75.49 E-value=1.1 Score=32.94 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=24.7
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccc-cccCCceeecCCCCe
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
-+|..|+-.--+..-+.+ ..||+.+ |+..-+-|.||.||-
T Consensus 4 y~C~vCGyvYd~~~Gdp~---------~gi~pGt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 4 YTCTVCGYIYDPEDGDPD---------DGVNPGTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp EEETTTCCEECTTTCBGG---------GTBCTTCCGGGSCTTCBCTTTCC
T ss_pred eECCCCCeEECCCcCCcc---------cCcCCCCChhHCCCCCcCcCCCC
Confidence 379999975421111101 2356654 667778899999995
No 37
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=74.39 E-value=66 Score=31.49 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=55.2
Q ss_pred hCCCCceEEEEechhhHHHHHhhcccCCCccC---cc-----CCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHHHH
Q 009948 100 FVSPDILKLGFKFKQDLIYLSSTFCSQGCDIG---FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKEL 171 (522)
Q Consensus 100 L~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~---~~-----~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~~ 171 (522)
+-++++..|.|....|+-.|.+.+--..+... |. ....++|+-.|+....+ ..-||..+++.
T Consensus 146 vl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~---------l~ggL~~lA~~- 215 (285)
T 4gmj_B 146 VLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN---------LKGGLQEVAEQ- 215 (285)
T ss_dssp SSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTT---------CCSCHHHHHHH-
T ss_pred HhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccc---------cCChHHHHHHh-
Confidence 34678888988888998776543210011000 00 01357884333322211 24589999876
Q ss_pred cCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009948 172 LDIS-LSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQK 219 (522)
Q Consensus 172 Lg~~-L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~~~ 219 (522)
||++ +.+. +-|..|++.+..++-.|++.+-+.
T Consensus 216 L~v~r~g~~----------------HqAGsDSllT~~~F~kl~~~~f~~ 248 (285)
T 4gmj_B 216 LELERIGPQ----------------HQAGSDSLLTGMAFFKMREMFFED 248 (285)
T ss_dssp TTCCCCSCT----------------TSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCC----------------CcchhHHHHHHHHHHHHHHHHhcC
Confidence 4543 2111 228899999999999999877643
No 38
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=74.10 E-value=1.9 Score=33.84 Aligned_cols=29 Identities=7% Similarity=0.211 Sum_probs=24.5
Q ss_pred CceeecCCCCeeEeccchhhHHHHHHHHh
Q 009948 489 LQFWQCMDCNQLYWEGTQYHNAVQKFIDV 517 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~~~~~~~~~ 517 (522)
-..|.|+.||-.|+...+-+++.+.+.++
T Consensus 34 Vp~~~C~~CGE~~~~~e~~~~~~~~~~~f 62 (78)
T 3ga8_A 34 IHGLYCVHCEESIMNKEESDAFMAQVKAF 62 (78)
T ss_dssp EEEEEETTTCCEECCHHHHHHHHHHHHHH
T ss_pred ceeEECCCCCCEEECHHHHHHHHHHHHHH
Confidence 36899999999999999998877766554
No 39
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=70.55 E-value=4 Score=40.62 Aligned_cols=102 Identities=15% Similarity=0.220 Sum_probs=57.1
Q ss_pred hHHHHHHhhCCCCceEEEEec------hhhH-HHHHhhcccCCCccCcc-CCCceeeHHHHHHHhhccccCCCCCcCccc
Q 009948 92 IWELLKELFVSPDILKLGFKF------KQDL-IYLSSTFCSQGCDIGFD-RVEPYLDITSIYNHLHHKQLGRKLPKETKS 163 (522)
Q Consensus 92 ~~~~L~~lL~~~~i~KVgh~~------k~Dl-~~L~~~~gi~g~~~~~~-~~~~~~Dlt~La~yLl~~~~~~~~~~~~~g 163 (522)
++..|..++.+..+ |+||+ ..|+ ..|.+.+...|+. +. ....++|+..++..+.... ........++
T Consensus 98 vl~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~--~p~~~~~~iDt~~l~~~~~~~~-~~~~~~~~~~ 172 (308)
T 3cg7_A 98 VYEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQ--MPAFFRQYINLYKIFTNEMDRM-GPKELSATTN 172 (308)
T ss_dssp HHHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCC--CCGGGSEEEEHHHHHHHHHHHH-CCCCCCCCSH
T ss_pred HHHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCC--CchhhcceeeHHHHHHHHhccc-cccccccCcC
Confidence 45556666665332 45665 8998 5665433222322 11 1135789656766554321 0000011578
Q ss_pred HHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 164 LANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (522)
Q Consensus 164 L~~L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~ 214 (522)
|.++++ .+|++.... .+-|..||.++.+|+..|..
T Consensus 173 L~~l~~-~~gi~~~~~---------------~HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 173 IGKMNE-YYDLPTIGR---------------AHDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp HHHHHH-HTTCCCCSC---------------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCCCC---------------CcCHHHHHHHHHHHHHHHHH
Confidence 999995 457665321 12288999999999988763
No 40
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=69.54 E-value=22 Score=39.98 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=82.8
Q ss_pred CCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC-------------CchhhHHHHH
Q 009948 31 QSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI-------------PLPSIWELLK 97 (522)
Q Consensus 31 ~~~~Vg~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l-------------~~~~~~~~L~ 97 (522)
.-.+++||.|... . + .+++|+..+. ....+|.++.... ...+++..+.
T Consensus 152 ~lrilsfDIE~~~-~------g--~i~~I~~~~~----------~~~~v~~l~~~~~~~~~~~~~V~~f~~E~~lL~~f~ 212 (786)
T 3k59_A 152 PLKWVSIDIETTR-H------G--ELYCIGLEGC----------GQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLN 212 (786)
T ss_dssp CCCEEEEEEEECT-T------S--CEEEEEEEET----------TEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHH
T ss_pred CCeEEEEEEEEcC-C------C--CEEEEEecCC----------CCCeEEEEecCCCCCCCCCceEEEeCCHHHHHHHHH
Confidence 3478999999762 1 1 2666665420 1245666653320 1123444444
Q ss_pred HhhC--CCCceEEEEech-hhHHHHHhhcccCCCccCccC--------------------C--CceeeHHHHHHHhhccc
Q 009948 98 ELFV--SPDILKLGFKFK-QDLIYLSSTFCSQGCDIGFDR--------------------V--EPYLDITSIYNHLHHKQ 152 (522)
Q Consensus 98 ~lL~--~~~i~KVgh~~k-~Dl~~L~~~~gi~g~~~~~~~--------------------~--~~~~Dlt~La~yLl~~~ 152 (522)
.++. ||+|+ +|||.. +|+..|......+|+...+.+ + ...+|+-.+.....
T Consensus 213 ~~i~~~dPDii-~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~--- 288 (786)
T 3k59_A 213 AWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAF--- 288 (786)
T ss_dssp HHHHHHCCSEE-EESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTT---
T ss_pred HHHHHcCCCEE-EecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhcc---
Confidence 4443 57754 899988 499887432111122111100 0 12578433333211
Q ss_pred cCCCCCcCcccHHHHHHHHcCCcccc------ccccCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009948 153 LGRKLPKETKSLANICKELLDISLSK------ELQCSD-WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (522)
Q Consensus 153 ~~~~~~~~~~gL~~L~~~~Lg~~L~K------~~q~sd-W~~RPL~~~qi~YAA~DA~~ll~L~~~L 212 (522)
.+..+++|.++++.+||..-.. ..+... |...+ ..-+.|...||..+++|+..+
T Consensus 289 ----~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~--~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 289 ----WNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDK--PALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp ----CCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHh
Confidence 1135899999999999965210 011221 22221 456889999999999998875
No 41
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=67.89 E-value=3.3 Score=31.80 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=19.5
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
-+|+.|.++|.. .. ...--.|+.||..|
T Consensus 11 L~CP~ck~~L~~---~~--------------------~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGPLRY---LE--------------------SEQLLVNERLNLAY 38 (67)
T ss_dssp CBCTTTCCBCEE---ET--------------------TTTEEEETTTTEEE
T ss_pred hCCCCCCCcCeE---eC--------------------CCCEEEcCCCCccc
Confidence 589999998742 10 11234699999998
No 42
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=67.26 E-value=2.8 Score=30.49 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=24.7
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccc-cccCCceeecCCCCe
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
-+|..|+-.-.+..-+. ...||+.+ |+...+-|.||.||-
T Consensus 4 y~C~~CGyvYd~~~Gdp---------~~gi~pGt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGDP---------DSGIKPGTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp EECSSSCCCCCTTTCCT---------TTTCCSSCCTTSSCTTCCCSSSCC
T ss_pred EEeCCCCeEEcCCcCCc---------ccCcCCCCchHHCCCCCcCCCCCC
Confidence 37999997542110010 12456665 566678899999995
No 43
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=66.09 E-value=3.7 Score=30.19 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=14.9
Q ss_pred CceeecCCCCeeEeccch
Q 009948 489 LQFWQCMDCNQLYWEGTQ 506 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH 506 (522)
...+.|+.||-.||.+..
T Consensus 34 ~dr~~C~kCgyt~~~~~~ 51 (55)
T 2k4x_A 34 ADRYSCGRCGYTEFKKAK 51 (55)
T ss_dssp SSEEECTTTCCCEECCCC
T ss_pred CCEEECCCCCCEEEeCcc
Confidence 358899999999998753
No 44
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=65.34 E-value=3.9 Score=29.13 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=10.6
Q ss_pred ceeecCCCCeeEe
Q 009948 490 QFWQCMDCNQLYW 502 (522)
Q Consensus 490 ~F~~C~~CgkvyW 502 (522)
.-..|+.||-+|=
T Consensus 23 gelvC~~CG~v~~ 35 (50)
T 1pft_A 23 GEIVCAKCGYVIE 35 (50)
T ss_dssp TEEEESSSCCBCC
T ss_pred CeEECcccCCccc
Confidence 3578999999884
No 45
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=64.00 E-value=2 Score=34.29 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=25.2
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccc-cccCCceeecCCCCe
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
-+|..|+-.-.+..-+. ...||+.+ |+...+-|.||.||-
T Consensus 28 y~C~vCGyvYD~~~Gdp---------~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 28 FRCIQCGFEYDEALGWP---------EDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp EEETTTCCEEETTTCBT---------TTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred EEeCCCCEEEcCCcCCc---------ccCcCCCCChhHCCCCCcCCCCCC
Confidence 57999997542111010 12466665 566677899999996
No 46
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=63.44 E-value=3.3 Score=27.61 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=11.9
Q ss_pred CCceeecCCCCeeE
Q 009948 488 NLQFWQCMDCNQLY 501 (522)
Q Consensus 488 ~~~F~~C~~Cgkvy 501 (522)
..+||.|+.||.|.
T Consensus 3 ~~~fY~C~~CGniv 16 (36)
T 1dxg_A 3 EGDVYKCELCGQVV 16 (36)
T ss_dssp TTCEEECTTTCCEE
T ss_pred cccEEEcCCCCcEE
Confidence 36899999999875
No 47
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=63.39 E-value=15 Score=33.58 Aligned_cols=33 Identities=12% Similarity=-0.093 Sum_probs=23.3
Q ss_pred hhHHHHHHhhCCCC----ceEEEEechhhHHHHHhhc
Q 009948 91 SIWELLKELFVSPD----ILKLGFKFKQDLIYLSSTF 123 (522)
Q Consensus 91 ~~~~~L~~lL~~~~----i~KVgh~~k~Dl~~L~~~~ 123 (522)
++...|..++.+.- ...||||+.+|+..|.+.+
T Consensus 87 ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~ 123 (194)
T 2gbz_A 87 QAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQM 123 (194)
T ss_dssp HHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHH
Confidence 34556666776532 2369999999999998754
No 48
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=62.87 E-value=11 Score=35.26 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=55.8
Q ss_pred hhHHHHHHhhCCCCceEEEEec--------hhhHHH-HHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCc
Q 009948 91 SIWELLKELFVSPDILKLGFKF--------KQDLIY-LSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKET 161 (522)
Q Consensus 91 ~~~~~L~~lL~~~~i~KVgh~~--------k~Dl~~-L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~ 161 (522)
+++..|..++.+.-+ ||||+ ..|+.. |.+.+...|+.. ......++|+...+...... ...
T Consensus 106 ~v~~~f~~~l~~~~l--v~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~-p~~~~~~iD~~~~~~~~~~~-------~p~ 175 (224)
T 2xri_A 106 QVLERVDEWMAKEGL--LDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPV-ADYFKQWINLKKAYSFAMGC-------WPK 175 (224)
T ss_dssp HHHHHHHHHHHHTTT--TSTTSCEEEEESSSHHHHTHHHHHHHHHTCCC-CGGGSCEEEHHHHHHHHHTS-------CCT
T ss_pred HHHHHHHHHHhhccc--ccCCCceEEEEeChhhHHHHHHHHHHHhCCCC-cccccceEeHHHHHHHHhcc-------CCC
Confidence 345566667766433 68888 999985 643322223221 00113678954333322211 124
Q ss_pred ccHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009948 162 KSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQ 213 (522)
Q Consensus 162 ~gL~~L~~~~Lg~~L~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~ 213 (522)
++|..|++ .+|++... + .+-|..||.++.+|+..|.
T Consensus 176 ~~L~~l~~-~~gi~~~~--~-------------~H~Al~DA~~ta~l~~~l~ 211 (224)
T 2xri_A 176 NGLLDMNK-GLSLQHIG--R-------------PHSGIDDCKNIANIMKTLA 211 (224)
T ss_dssp TTHHHHHH-HTTCCCCS--C-------------TTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HcCCCCCC--C-------------CcChHHHHHHHHHHHHHHH
Confidence 79999987 55765421 1 1238899999999988876
No 49
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=62.56 E-value=3 Score=30.39 Aligned_cols=39 Identities=18% Similarity=0.408 Sum_probs=24.1
Q ss_pred cccCCCCcCccCCCChHHHHHhhcccccCCccc-cccCCceeecCCCCe
Q 009948 452 RCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 452 RC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
+|..|+-.-.+..-+.+ ..||+.+ |+...+-|.||.||-
T Consensus 4 ~C~~CGyvYd~~~Gdp~---------~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 4 SCKICGYIYDEDEGDPD---------NGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp EESSSSCEEETTTCBGG---------GTBCTTCCGGGSCTTCBCTTTCC
T ss_pred EeCCCCeEECCCcCCcc---------cCcCCCCCHhHCCCCCcCCCCCC
Confidence 69999975321111111 2355555 566678899999996
No 50
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=62.11 E-value=7.7 Score=44.31 Aligned_cols=34 Identities=18% Similarity=0.034 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 400 (522)
-++||+|+.||+|.++.+.+.-.-.+...|.++|
T Consensus 61 vl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g 94 (878)
T 2v0c_A 61 VLARFRRMQGYEVLHPMGWDAFGLPAENAALKFG 94 (878)
T ss_dssp HHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTT
T ss_pred HHHHHHHhcCCceEeecccCcccHHHHHHHHHcC
Confidence 4799999999999998764322334555666665
No 51
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=61.34 E-value=3.1 Score=32.26 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=25.1
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccc-cccCCceeecCCCCe
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
-+|..|+-.-.+..-+. ...||+.+ |+...+=|.||.||-
T Consensus 8 y~C~vCGyiYd~~~Gdp---------~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 8 YECEACGYIYEPEKGDK---------FAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp EEETTTCCEECTTTCCT---------TTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred EEeCCCCEEEcCCCCCc---------ccCcCCCCchhhCCCCCcCCCCCC
Confidence 57999997542111110 12466665 566677899999996
No 52
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=60.74 E-value=3.7 Score=23.76 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=14.7
Q ss_pred eeecCCCCeeEeccchhhH
Q 009948 491 FWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 491 F~~C~~CgkvyW~GsH~~~ 509 (522)
-+.|+.||+.|-.-+++.+
T Consensus 3 ~~~C~~C~k~f~~~~~l~~ 21 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTK 21 (27)
T ss_dssp CEECSSSSCEESSHHHHHH
T ss_pred CccCCCcChhhCCHHHHHH
Confidence 3689999999977666544
No 53
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=59.89 E-value=2.8 Score=30.94 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=24.5
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccc-cccCCceeecCCCCe
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
-+|..|+-.-.+..-+. ...||+.+ |+...+-|.||.||-
T Consensus 4 y~C~~CGyvYd~~~Gdp---------~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLP---------EEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp EEETTTCCEEETTTCBT---------TTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred EEeCCCCeEECCCcCCc---------ccCcCCCCChhHCCCCCcCCCCCC
Confidence 37999997542111010 12356655 566677899999996
No 54
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=59.87 E-value=4.7 Score=23.50 Aligned_cols=18 Identities=11% Similarity=0.517 Sum_probs=14.7
Q ss_pred eecCCCCeeEeccchhhH
Q 009948 492 WQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~~ 509 (522)
+.|+.||+.|-.-+++.+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTL 20 (29)
T ss_dssp EECSSSSCEESCSHHHHH
T ss_pred ccCCCCCchhCCHHHHHH
Confidence 679999999987776654
No 55
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=59.30 E-value=2.8 Score=33.93 Aligned_cols=40 Identities=18% Similarity=0.387 Sum_probs=25.1
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccc-cccCCceeecCCCCe
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCL-FDKNLQFWQCMDCNQ 499 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v-~~~~~~F~~C~~Cgk 499 (522)
-+|..|+-.-.+..-+.+ ..||+.+ |+...+-|.||.||-
T Consensus 36 y~C~vCGyvYD~~~Gdp~---------~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 36 WICITCGHIYDEALGDEA---------EGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp EEETTTTEEEETTSCCTT---------TTCCSCCCGGGCCTTCCCSSSCC
T ss_pred EECCCCCeEecCCcCCcc---------cCcCCCCChhHCCCCCCCCCCCC
Confidence 589999975321111111 2356655 566677899999995
No 56
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=57.89 E-value=15 Score=31.39 Aligned_cols=59 Identities=17% Similarity=0.377 Sum_probs=38.1
Q ss_pred HHHHHHHHHcccccccCcCCCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 431 QQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 431 eQl~~v~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
.++..|.....+.+.++.--+-|-.|+..|++. ++. .+ +|-.. ....-.+.|..||.+.
T Consensus 46 ~~~~~is~k~~irlp~~~KR~~Ck~C~s~LiPG-~t~-~v--------ri~~~--~~~~vv~tCl~Cg~~k 104 (120)
T 1x0t_A 46 ELALEIQKKAKVKIPRKWKRRYCKRCHTFLIPG-VNA-RV--------RLRTK--RMPHVVITCLECGYIM 104 (120)
T ss_dssp HHHHHHHHHHTCCCCTTTTTSBCTTTCCBCCBT-TTE-EE--------EEECS--SSCEEEEEETTTCCEE
T ss_pred HHHHHHHHHhccCCCHHHHHHhccCCCCEeECC-Cce-EE--------EEecC--CccEEEEECCCCCCEE
Confidence 567888888888888776677899999998742 110 00 01000 0013578899999764
No 57
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=62.04 E-value=2.2 Score=24.57 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=14.3
Q ss_pred eecCCCCeeEeccchhhH
Q 009948 492 WQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~~ 509 (522)
+.|+.||+.|-.-++..+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLAN 20 (26)
Confidence 679999999987776543
No 58
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=56.75 E-value=5.1 Score=42.34 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~R 401 (522)
-|+||||..||+|.++.+.+.-|..|+..|.++|.
T Consensus 52 vl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~ 86 (462)
T 3tqo_A 52 MVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKE 86 (462)
T ss_dssp HHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCC
Confidence 36899999999999987643335679999988874
No 59
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=56.65 E-value=4.2 Score=32.57 Aligned_cols=15 Identities=33% Similarity=0.922 Sum_probs=12.7
Q ss_pred ceeecCCCCeeEecc
Q 009948 490 QFWQCMDCNQLYWEG 504 (522)
Q Consensus 490 ~F~~C~~CgkvyW~G 504 (522)
--|.|+.||+.|=.|
T Consensus 44 GiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 44 GIWQCSYCDYKFTGG 58 (83)
T ss_dssp TEEEETTTCCEEECC
T ss_pred CeEECCCCCCEecCC
Confidence 489999999998555
No 60
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=56.59 E-value=4.5 Score=23.54 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=13.4
Q ss_pred eecCCCCeeEeccchhh
Q 009948 492 WQCMDCNQLYWEGTQYH 508 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~ 508 (522)
+.|+.||+.|-.-+++.
T Consensus 4 ~~C~~C~k~f~~~~~l~ 20 (27)
T 2kvg_A 4 YRCPLCRAGCPSLASMQ 20 (27)
T ss_dssp EEETTTTEEESCHHHHH
T ss_pred cCCCCCCcccCCHHHHH
Confidence 67999999997665544
No 61
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=56.55 E-value=5.2 Score=45.70 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 400 (522)
-+|||+|+.||+|.++...+.-.-.+...|.++|
T Consensus 81 vlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g 114 (880)
T 4arc_A 81 VIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNN 114 (880)
T ss_dssp HHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTT
T ss_pred HHHHHHHHcCCceEEecCccccCcHHHHHHHHcC
Confidence 4799999999999988753222224555566555
No 62
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=56.25 E-value=17 Score=31.17 Aligned_cols=60 Identities=17% Similarity=0.344 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcccccccCcCCCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 430 NQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 430 ~eQl~~v~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
..++..|.....+.+.++.--+-|-.|+..|++. ++. . + +|-.. ....-.+.|..||.+.
T Consensus 40 ~~~~~~Is~K~~irlp~~~KR~~Ck~C~s~LIPG-~t~-~------v--ri~~~--~k~~vv~tCl~Cg~~k 99 (123)
T 2k3r_A 40 VELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPG-INA-R------V--RLRQK--RMPHIVVKCLECGHIM 99 (123)
T ss_dssp HHHHHHHHHHHTCCCSSTTTTSBCTTTCCBCCBT-TTE-E------E--EEECS--SSCEEEEEETTTTEEE
T ss_pred HHHHHHHHHHhccCCCHHHHHHhccCCCCEeECC-Cce-E------E--EEecC--CccEEEEECCCCCCEE
Confidence 3567888888888888776677899999998742 110 0 0 11100 0013578899999764
No 63
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=55.81 E-value=5 Score=23.28 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=14.0
Q ss_pred eecCCCCeeEeccchhhH
Q 009948 492 WQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~~ 509 (522)
+.|+.|||.|-.-+++.+
T Consensus 4 ~~C~~C~k~f~~~~~l~~ 21 (28)
T 2kvf_A 4 YSCSVCGKRFSLKHQMET 21 (28)
T ss_dssp EECSSSCCEESCHHHHHH
T ss_pred ccCCCCCcccCCHHHHHH
Confidence 679999999987665543
No 64
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=55.05 E-value=4.3 Score=23.47 Aligned_cols=18 Identities=11% Similarity=0.429 Sum_probs=14.8
Q ss_pred eecCCCCeeEeccchhhH
Q 009948 492 WQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~~ 509 (522)
+.|+.||+.|-.-+++.+
T Consensus 3 ~~C~~C~~~f~~~~~l~~ 20 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKA 20 (29)
T ss_dssp CCCSSCCCCCCTTTHHHH
T ss_pred CcCCCCCcccCCHHHHHH
Confidence 679999999988777654
No 65
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.55 E-value=5.4 Score=24.87 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=15.8
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2els_A 8 KIFTCEYCNKVFKFKHSLQA 27 (36)
T ss_dssp CCEECTTTCCEESSHHHHHH
T ss_pred CCEECCCCCceeCCHHHHHH
Confidence 45789999999987766654
No 66
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=53.41 E-value=3.8 Score=23.86 Aligned_cols=18 Identities=11% Similarity=0.444 Sum_probs=14.5
Q ss_pred eecCCCCeeEeccchhhH
Q 009948 492 WQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~~ 509 (522)
+.|+.||+.|-.-+++.+
T Consensus 3 ~~C~~C~~~f~~~~~l~~ 20 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKR 20 (29)
T ss_dssp CBCTTTCCBCSSHHHHHH
T ss_pred eECCCCCcccCCHHHHHH
Confidence 679999999987766554
No 67
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=52.74 E-value=4 Score=23.40 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=13.6
Q ss_pred eecCCCCeeEeccchhhH
Q 009948 492 WQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~~ 509 (522)
+.|+.|||.|-.-+++.+
T Consensus 2 ~~C~~C~k~f~~~~~l~~ 19 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSR 19 (27)
T ss_dssp CBCSSSCCBCSSHHHHHH
T ss_pred ccCCCCCCcCCCHHHHHH
Confidence 579999999977655443
No 68
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=51.42 E-value=6.3 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=14.4
Q ss_pred eeecCCCCeeEeccchhhH
Q 009948 491 FWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 491 F~~C~~CgkvyW~GsH~~~ 509 (522)
-+.|+.||+.|-.-+++.+
T Consensus 3 ~~~C~~C~~~f~~~~~l~~ 21 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMR 21 (30)
T ss_dssp CEECTTTCCEESCHHHHHH
T ss_pred CccCCCCCcccCCHHHHHH
Confidence 4789999999976655543
No 69
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=51.15 E-value=4.9 Score=23.41 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=14.6
Q ss_pred eecCCCCeeEeccchhhH
Q 009948 492 WQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~~ 509 (522)
+.|+.||+.|-.-+++.+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLKT 20 (30)
T ss_dssp CCCSSSSCCCSCSHHHHH
T ss_pred ccCCCCCCccCCHHHHHH
Confidence 679999999987776654
No 70
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=50.39 E-value=6.8 Score=22.57 Aligned_cols=18 Identities=11% Similarity=0.510 Sum_probs=14.1
Q ss_pred eecCCCCeeEeccchhhH
Q 009948 492 WQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~~ 509 (522)
+.|+.||+.|-.-+++.+
T Consensus 3 ~~C~~C~k~f~~~~~l~~ 20 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKR 20 (29)
T ss_dssp EECTTTSCEESCHHHHHH
T ss_pred ccCCCCCCccCChhHHHH
Confidence 679999999977666544
No 71
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=50.18 E-value=15 Score=32.29 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=32.3
Q ss_pred ChHHHHHhhhcCCcEEEecChhHHHhhhhcCceEEEEcc
Q 009948 388 EPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKS 426 (522)
Q Consensus 388 ~d~~ll~~A~~E~RiiLTrd~~l~~~~~~~~~~~~~v~~ 426 (522)
-|..++++|++.+.+++|.|..+.+.+...+..++.++.
T Consensus 94 vD~~l~~lA~~~~a~lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 94 IDAMIRKVAKETNSILLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp HHHHHHHHHHHTTCEEEESCHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHHHHhCCEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 367899999999999999999998777666667777654
No 72
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.71 E-value=6.9 Score=23.98 Aligned_cols=20 Identities=10% Similarity=0.298 Sum_probs=15.6
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.||+.|-.-++..+
T Consensus 6 k~~~C~~C~k~f~~~~~L~~ 25 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRLRS 25 (35)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCcchhCCHHHHHH
Confidence 45789999999987666544
No 73
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=49.63 E-value=7.1 Score=33.79 Aligned_cols=28 Identities=18% Similarity=0.765 Sum_probs=20.1
Q ss_pred CCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 450 MSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 450 ~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
+.-|+.||+.. +|+. ...|.||.|+.-+
T Consensus 27 lP~CP~C~sey-----------------------tYeD-g~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEY-----------------------TYED-GALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCC-----------------------CEEC-SSSEEETTTTEEE
T ss_pred CCCCCCCCCcc-----------------------eEec-CCeEECCcccccc
Confidence 46799999953 3332 4579999999753
No 74
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=49.06 E-value=11 Score=27.80 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=10.6
Q ss_pred ceeecCCCCeeEe
Q 009948 490 QFWQCMDCNQLYW 502 (522)
Q Consensus 490 ~F~~C~~CgkvyW 502 (522)
--+.|..||-||=
T Consensus 29 ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 29 GDMICPECGLVVG 41 (58)
T ss_dssp CCEECTTTCCEEC
T ss_pred CeEEeCCCCCEEe
Confidence 4588999999873
No 75
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=48.99 E-value=7.3 Score=41.03 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~R 401 (522)
-|+|+||..||+|.++.+.+.-|..++..|+++|.
T Consensus 49 ~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~ 83 (461)
T 1li5_A 49 VVARYLRFLGYKLKYVRNITDIDDKIIKRANENGE 83 (461)
T ss_dssp HHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCC
Confidence 57999999999999886533335678889988874
No 76
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=47.96 E-value=7.6 Score=29.11 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=8.9
Q ss_pred CCCcccCCCCc
Q 009948 449 LMSRCTKCNGR 459 (522)
Q Consensus 449 ~~sRC~~CN~~ 459 (522)
.++.|+.|+..
T Consensus 29 ~l~~c~~cGe~ 39 (60)
T 3v2d_5 29 TLVPCPECKAM 39 (60)
T ss_dssp CCEECTTTCCE
T ss_pred ceeECCCCCCe
Confidence 37899999984
No 77
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.00 E-value=8.1 Score=23.87 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=15.6
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elt_A 8 KPYKCPQCSYASAIKANLNV 27 (36)
T ss_dssp CSEECSSSSCEESSHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHH
Confidence 45789999999987666544
No 78
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=46.59 E-value=8.3 Score=32.72 Aligned_cols=15 Identities=33% Similarity=0.922 Sum_probs=13.0
Q ss_pred ceeecCCCCeeEecc
Q 009948 490 QFWQCMDCNQLYWEG 504 (522)
Q Consensus 490 ~F~~C~~CgkvyW~G 504 (522)
--|.|+.||++|=.|
T Consensus 77 GIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 77 GIWQCSYCDYKFTGG 91 (116)
T ss_dssp TEEEETTTCCEEECC
T ss_pred eeEECCCCCCEEECC
Confidence 489999999998666
No 79
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.82 E-value=6.4 Score=24.62 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=15.8
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.||+.|-.-+++.+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRLIKS 27 (37)
T ss_dssp CCCEETTTTEECSSHHHHHH
T ss_pred CCcCCCCCCCccCCHHHHHH
Confidence 45789999999987766554
No 80
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=44.99 E-value=16 Score=31.78 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=30.0
Q ss_pred ChHHHHHhhhcCCcEEEecChhHHHhhhhcCceEEEE
Q 009948 388 EPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRV 424 (522)
Q Consensus 388 ~d~~ll~~A~~E~RiiLTrd~~l~~~~~~~~~~~~~v 424 (522)
-|..+++.|++-+.+++|.|..+.+.+...+..++.+
T Consensus 86 vD~~ll~lA~~~~~~lvTnD~~L~kvA~~~GI~Vl~l 122 (134)
T 3ix7_A 86 VDEKLLFLARDLEAALVTNDHALLQMARIYGVKALSI 122 (134)
T ss_dssp HHHHHHHHHHHTTCEEEESCHHHHHHHHHTTCCEEEH
T ss_pred HHHHHHHHHHHhCCEEEeCCHHHHHHHHHCCCeEEeh
Confidence 4778999999999999999999977766555555554
No 81
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=44.28 E-value=8.5 Score=28.83 Aligned_cols=12 Identities=25% Similarity=1.016 Sum_probs=9.3
Q ss_pred cCCCcccCCCCc
Q 009948 448 QLMSRCTKCNGR 459 (522)
Q Consensus 448 ~~~sRC~~CN~~ 459 (522)
..++.|+.|+..
T Consensus 28 p~l~~c~~cG~~ 39 (60)
T 2zjr_Z 28 PNLTECPQCHGK 39 (60)
T ss_dssp CCCEECTTTCCE
T ss_pred CCceECCCCCCE
Confidence 346889999984
No 82
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=44.03 E-value=15 Score=31.88 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCChHHHHHhhhcCCcEEEecChhHHHhhhhcCceEEEEccC
Q 009948 386 KPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSL 427 (522)
Q Consensus 386 ~~~d~~ll~~A~~E~RiiLTrd~~l~~~~~~~~~~~~~v~~~ 427 (522)
++ |.-+++.|.+.+-+|+|.|++|.++....+..++.+...
T Consensus 98 ~~-D~~Ila~A~~~~~~LvT~D~~l~~~a~~~Gv~vi~~~~~ 138 (147)
T 1o4w_A 98 EG-DPSLIEAAEKYGCILITNDKELKRKAKQRGIPVGYLKED 138 (147)
T ss_dssp CS-HHHHHHHHHHHTCEEECCCHHHHHHHHHTTCCEECCCCC
T ss_pred Cc-hHHHHHHHHHhCCEEEECCHHHHHHHHHCCCeEEEecCC
Confidence 35 788999999999999999998876654444455555443
No 83
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=43.89 E-value=8.2 Score=27.32 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=11.5
Q ss_pred ceeecCCCCeeEec
Q 009948 490 QFWQCMDCNQLYWE 503 (522)
Q Consensus 490 ~F~~C~~CgkvyW~ 503 (522)
.-|+|+.||-||=+
T Consensus 3 ~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 3 QKYVCNVCGYEYDP 16 (46)
T ss_dssp CCEEETTTCCEECG
T ss_pred CEEECCCCCeEEeC
Confidence 46899999999953
No 84
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=43.85 E-value=9.6 Score=23.38 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=15.1
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.||+.|-.-+++.+
T Consensus 6 k~~~C~~C~k~f~~~~~l~~ 25 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCAR 25 (35)
T ss_dssp SCEECSSSCCEESSHHHHHH
T ss_pred cCeeCCCCCcccCCHHHHHH
Confidence 35789999999977665543
No 85
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=43.53 E-value=7.5 Score=40.26 Aligned_cols=34 Identities=6% Similarity=0.032 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 400 (522)
-|+|+||..||+|.++...+.-+..++..|+++|
T Consensus 66 vlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g 99 (414)
T 3c8z_A 66 LVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDG 99 (414)
T ss_dssp HHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcC
Confidence 5799999999999988754333457888898876
No 86
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.52 E-value=12 Score=23.31 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=16.0
Q ss_pred CceeecCCCCeeEecc-chhhH
Q 009948 489 LQFWQCMDCNQLYWEG-TQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~G-sH~~~ 509 (522)
..-+.|+.||+.|-.- +++.+
T Consensus 7 ~k~~~C~~C~k~f~~~~~~L~~ 28 (37)
T 2elp_A 7 GRAMKCPYCDFYFMKNGSDLQR 28 (37)
T ss_dssp CCCEECSSSSCEECSSCHHHHH
T ss_pred CCCeECCCCChhhccCHHHHHH
Confidence 3457899999999876 66654
No 87
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=42.28 E-value=13 Score=30.68 Aligned_cols=47 Identities=21% Similarity=0.501 Sum_probs=26.4
Q ss_pred HHHHHHHc-ccccccCcCCCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCe
Q 009948 433 LLEVIEAF-QLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQ 499 (522)
Q Consensus 433 l~~v~~~f-~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgk 499 (522)
+.+|+..+ .++-........|+.|+..- |....+....+|.|-+||+
T Consensus 19 i~~v~~~~~~lk~~G~~~~~~CPfh~e~~--------------------pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 19 IVDVIGEYVQLKRQGRNYFGLCPFHGEKT--------------------PSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp HHHHHTTTSCCEEETTEEEECCSSSCCSS--------------------CCEEEETTTTEEEETTTCC
T ss_pred HHHHHHHhCCeeecCCeEEEECCCCCCCC--------------------CcEEEEcCCCEEEECCCCC
Confidence 34566554 22222233356899998631 1122233456999999995
No 88
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.96 E-value=11 Score=23.39 Aligned_cols=20 Identities=10% Similarity=0.398 Sum_probs=15.2
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elv_A 8 LLYDCHICERKFKNELDRDR 27 (36)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 45789999999977665543
No 89
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=47.90 E-value=5.4 Score=23.32 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=13.2
Q ss_pred eecCCCCeeEeccchhh
Q 009948 492 WQCMDCNQLYWEGTQYH 508 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~ 508 (522)
+.|+.||+.|-.-+++.
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLI 19 (29)
Confidence 67999999997655543
No 90
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=41.68 E-value=11 Score=29.29 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=9.1
Q ss_pred CceeecCCCCeeE
Q 009948 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~Cgkvy 501 (522)
.+-.+|| ||+..
T Consensus 19 ~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 19 AKTRKCV-CGRTV 30 (71)
T ss_dssp CSEEEET-TTEEE
T ss_pred CcEEECC-CCCee
Confidence 4567899 99864
No 91
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=41.31 E-value=11 Score=34.42 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=20.2
Q ss_pred CCCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCee
Q 009948 449 LMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQL 500 (522)
Q Consensus 449 ~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkv 500 (522)
...-|+.||..++. ....-|+|+.|++.
T Consensus 41 ~Y~ACp~CnKKV~~------------------------~~~g~~~CekC~~~ 68 (172)
T 3u50_C 41 YYYRCTCQGKSVLK------------------------YHGDSFFCESCQQF 68 (172)
T ss_dssp EEEECTTSCCCEEE------------------------ETTTEEEETTTTEE
T ss_pred EehhchhhCCEeee------------------------CCCCeEECCCCCCC
Confidence 35679999996521 12357999999997
No 92
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=40.53 E-value=16 Score=30.92 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=21.2
Q ss_pred ceeecCCCCeeEeccchhhHHHHHHHH
Q 009948 490 QFWQCMDCNQLYWEGTQYHNAVQKFID 516 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~~~~~~~~ 516 (522)
..|.|+.||..|+.....++..+...+
T Consensus 35 ~~~~C~~CGE~~~d~e~~~~~~~~~~e 61 (133)
T 3o9x_A 35 HGLYCVHCEESIMNKEESDAFMAQVKA 61 (133)
T ss_dssp EEEEESSSSCEECCHHHHHHHHHHHHH
T ss_pred ceeECCCCCCEeecHHHHHHHHHHHHH
Confidence 799999999999998877666554433
No 93
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.41 E-value=17 Score=22.80 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=16.0
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|-.-+++.+
T Consensus 7 ~k~~~C~~C~k~f~~~~~L~~ 27 (37)
T 2elm_A 7 GHLYYCSQCHYSSITKNCLKR 27 (37)
T ss_dssp SCEEECSSSSCEEECHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHH
Confidence 346889999999977666544
No 94
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=46.08 E-value=6.1 Score=23.11 Aligned_cols=17 Identities=12% Similarity=0.620 Sum_probs=13.4
Q ss_pred eecCCCCeeEeccchhh
Q 009948 492 WQCMDCNQLYWEGTQYH 508 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~ 508 (522)
+.|+.||+.|-.-+++.
T Consensus 4 ~~C~~C~k~f~~~~~l~ 20 (30)
T 2lvr_A 4 YVCIHCQRQFADPGALQ 20 (30)
Confidence 67999999997766554
No 95
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.76 E-value=12 Score=23.10 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=15.9
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|=.-+++.+
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elq_A 7 GKPFKCSLCEYATRSKSNLKA 27 (36)
T ss_dssp CCSEECSSSSCEESCHHHHHH
T ss_pred CCCccCCCCCchhCCHHHHHH
Confidence 345789999999977666544
No 96
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=39.62 E-value=7.8 Score=23.88 Aligned_cols=18 Identities=11% Similarity=0.589 Sum_probs=14.3
Q ss_pred eecCCCCeeEeccchhhH
Q 009948 492 WQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~~ 509 (522)
+.|+.||+.|-.-+++.+
T Consensus 3 ~~C~~C~k~F~~~~~L~~ 20 (33)
T 1rim_A 3 FACPECPKRFMRSDHLSK 20 (33)
T ss_dssp CCCSSSCCCCSSHHHHHH
T ss_pred ccCCCCCchhCCHHHHHH
Confidence 579999999977666554
No 97
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=39.41 E-value=12 Score=25.49 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=15.4
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|..|||.|-.-+++.+
T Consensus 6 kp~~C~~C~k~F~~~~~L~~ 25 (48)
T 3iuf_A 6 KPYACDICGKRYKNRPGLSY 25 (48)
T ss_dssp SCEECTTTCCEESSHHHHHH
T ss_pred cCEECCCcCcccCCHHHHHH
Confidence 45789999999987666544
No 98
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=39.07 E-value=10 Score=22.12 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=12.9
Q ss_pred eecCCCCeeEeccchhh
Q 009948 492 WQCMDCNQLYWEGTQYH 508 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~~ 508 (522)
+.|+.||+.|=.-+++.
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLI 19 (30)
T ss_dssp SBCTTTCCBCSSSHHHH
T ss_pred cCCcccCcccCChHHHH
Confidence 57999999996655543
No 99
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=38.46 E-value=13 Score=23.61 Aligned_cols=20 Identities=10% Similarity=0.375 Sum_probs=15.1
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 5 k~~~C~~C~k~f~~~~~L~~ 24 (39)
T 1njq_A 5 RSYTCSFCKREFRSAQALGG 24 (39)
T ss_dssp SSEECTTTCCEESSHHHHHH
T ss_pred CceECCCCCcccCCHHHHHH
Confidence 34789999999977666543
No 100
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.17 E-value=13 Score=24.51 Aligned_cols=21 Identities=10% Similarity=0.453 Sum_probs=16.2
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yts_A 10 EKPYICNECGKSFIQKSHLNR 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCEECCCCChhhCChHHHHH
Confidence 345889999999987766554
No 101
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=38.13 E-value=12 Score=33.83 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=12.7
Q ss_pred CceeecCCCCeeEe
Q 009948 489 LQFWQCMDCNQLYW 502 (522)
Q Consensus 489 ~~F~~C~~CgkvyW 502 (522)
..+|+|+.||-||-
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 46999999999997
No 102
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.91 E-value=9.2 Score=23.60 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=15.5
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.|||.|-.-+++.+
T Consensus 7 ~~~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elr_A 7 GKTHLCDMCGKKFKSKGTLKS 27 (36)
T ss_dssp CSSCBCTTTCCBCSSHHHHHH
T ss_pred CCCeecCcCCCCcCchHHHHH
Confidence 345789999999976665543
No 103
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=37.25 E-value=9.6 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=14.8
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.||+.|-.-+++.+
T Consensus 10 k~~~C~~C~k~f~~~~~l~~ 29 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHLAL 29 (37)
T ss_dssp SSBCCTTTCCCBSSHHHHHH
T ss_pred CCccCCCCCcccCcHHHHHH
Confidence 45789999999976555443
No 104
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=37.18 E-value=19 Score=31.65 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=33.2
Q ss_pred cHHHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecChhHHHhhh
Q 009948 365 VEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQY 415 (522)
Q Consensus 365 Lg~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~RiiLTrd~~l~~~~~ 415 (522)
-+.|...||..|.-. +..|.-|+..|...|-.|+|+|++|.+-..
T Consensus 97 a~~l~~~l~~~G~~~------~~~D~lIaA~A~~~~~~LvT~d~dF~~i~~ 141 (150)
T 3dbo_B 97 WARLRIHLAESGRRV------RINDLWIAAVAASRALPVITQDDDFAALDG 141 (150)
T ss_dssp HHHHHHHHHHHTCCC------BHHHHHHHHHHHHTTCCEEESSSSGGGGTT
T ss_pred HHHHHHHHHHcCCCC------CCchHHHHHHHHHCCCEEEECChhhhhCCC
Confidence 346677777788631 234677889999999999999988865443
No 105
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.05 E-value=14 Score=24.42 Aligned_cols=20 Identities=10% Similarity=0.587 Sum_probs=15.5
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2emi_A 11 RHYECSECGKAFIQKSTLSM 30 (46)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHH
Confidence 45789999999987666544
No 106
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=36.57 E-value=8.2 Score=41.13 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCceecCCCC-CC---------ChHHHHHhhhcCCc
Q 009948 367 GLAKHLRCVGIDAATPRSK-KP---------EPRELIDQTSKEKR 401 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~-~~---------~d~~ll~~A~~E~R 401 (522)
=|+||||..||+|.++.+. +. -+..|+..|+++|.
T Consensus 69 vl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~ 113 (501)
T 3sp1_A 69 LLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGL 113 (501)
T ss_dssp HHHHHHHHHTCCEEEEEEEBCSCCC-------------------C
T ss_pred HHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCC
Confidence 3699999999999997421 11 14568888888774
No 107
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.48 E-value=14 Score=24.29 Aligned_cols=21 Identities=10% Similarity=0.433 Sum_probs=16.2
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yrj_A 10 EKPYRCGECGKAFAQKANLTQ 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCCccCCHHHHHH
Confidence 345789999999988766654
No 108
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.08 E-value=15 Score=24.13 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=15.6
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (44)
T 2epv_A 11 KPYECNECGKAFIWKSLLIV 30 (44)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred cCeECCCCCcccCchHHHHH
Confidence 45789999999977666554
No 109
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.69 E-value=18 Score=23.91 Aligned_cols=20 Identities=10% Similarity=0.438 Sum_probs=15.9
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCSKYLTQ 30 (46)
T ss_dssp CCEECSSSCCEESSSHHHHH
T ss_pred CCEECcCCCCcCCCHHHHHH
Confidence 45789999999988776654
No 110
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=35.69 E-value=15 Score=23.53 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=15.6
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 10 ~~~~C~~C~k~f~~~~~l~~ 29 (42)
T 2epc_A 10 TPYLCGQCGKSFTQRGSLAV 29 (42)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHH
Confidence 45789999999987666554
No 111
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.60 E-value=18 Score=26.60 Aligned_cols=11 Identities=18% Similarity=0.609 Sum_probs=9.3
Q ss_pred CcccCCCCcCc
Q 009948 451 SRCTKCNGRFI 461 (522)
Q Consensus 451 sRC~~CN~~l~ 461 (522)
-+|+.|.++|.
T Consensus 11 L~CP~c~~~L~ 21 (56)
T 2kpi_A 11 LACPACHAPLE 21 (56)
T ss_dssp CCCSSSCSCEE
T ss_pred eeCCCCCCcce
Confidence 48999999874
No 112
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=34.72 E-value=13 Score=35.60 Aligned_cols=25 Identities=24% Similarity=0.735 Sum_probs=13.1
Q ss_pred ccCCccccccCCceeecCCCCeeEec
Q 009948 478 QRIPDCLFDKNLQFWQCMDCNQLYWE 503 (522)
Q Consensus 478 ~~vp~~v~~~~~~F~~C~~CgkvyW~ 503 (522)
+.|++.-|+. ..||.|..|++.|+.
T Consensus 18 ~~~~~~~~~~-~d~~~Ce~C~~~~~~ 42 (237)
T 3ray_A 18 DLIVPKSFQQ-VDFWFCESCQEYFVD 42 (237)
T ss_dssp ------------CCEEETTTTEEESS
T ss_pred cccCCCCCCC-CCEEEchHhCccccc
Confidence 3567776764 679999999999986
No 113
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.34 E-value=16 Score=24.05 Aligned_cols=21 Identities=10% Similarity=0.390 Sum_probs=16.5
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2em3_A 10 EKPYECKVCSKAFTQKAHLAQ 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHH
Confidence 345889999999988777654
No 114
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=34.30 E-value=34 Score=30.25 Aligned_cols=53 Identities=9% Similarity=0.300 Sum_probs=33.0
Q ss_pred EEEccCChHHHHHHHHHHcccccccCcCCCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCee
Q 009948 422 YRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQL 500 (522)
Q Consensus 422 ~~v~~~~~~eQl~~v~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkv 500 (522)
+.|+-.-...++..+++.|= .-|-.|+.|+.+-.. +.+ +...-|-.|..||..
T Consensus 82 lii~G~~~~~~i~~~L~~yI------~~yVlC~~C~sPdT~--L~k------------------~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 82 VVLQGRFTPYLIANKLKKYI------KEYVICPVCGSPDTK--IIK------------------RDRFHFLKCEACGAE 134 (148)
T ss_dssp EEESSCCCHHHHHHHHHHHH------HHHSSCSSSCCTTCC--CCB------------------SSSSBCCCCSSSCCC
T ss_pred EEEEeeeCHHHHHHHHHHHH------HHEEECCCCCCcCcE--EEE------------------eCCEEEEEecCCCCC
Confidence 44444444678888888881 124579999996431 111 123457889999864
No 115
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=34.07 E-value=15 Score=29.15 Aligned_cols=13 Identities=23% Similarity=0.810 Sum_probs=11.2
Q ss_pred CceeecCCCCeeE
Q 009948 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~Cgkvy 501 (522)
..-.+|+.||++|
T Consensus 54 g~~~RC~eCG~~f 66 (80)
T 2odx_A 54 NEVARCWECGSVY 66 (80)
T ss_dssp TCEEECSSSCCEE
T ss_pred CCCeECCCCCeEE
Confidence 4678999999988
No 116
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.94 E-value=16 Score=24.06 Aligned_cols=22 Identities=9% Similarity=0.427 Sum_probs=16.8
Q ss_pred CceeecCCCCeeEeccchhhHH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~~ 510 (522)
..-+.|+.|||.|-.-+++.+=
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2em4_A 10 QRPYECIECGKAFKTKSSLICH 31 (46)
T ss_dssp SSSEECSSSCCEESSHHHHHHH
T ss_pred CcCcCCCCCCCccCCHHHHHHH
Confidence 3457899999999887766543
No 117
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.93 E-value=16 Score=24.06 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=17.0
Q ss_pred CceeecCCCCeeEeccchhhHH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~~ 510 (522)
..-+.|+.||+.|-.-+++.+=
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2yto_A 10 EKPYKCSDCGKAFTRKSGLHIH 31 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHH
T ss_pred CCCEECcccCCccCCHhHHHHH
Confidence 3458899999999887776653
No 118
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.65 E-value=13 Score=24.24 Aligned_cols=21 Identities=14% Similarity=0.494 Sum_probs=16.2
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2eoj_A 10 ENPYECCECGKVFSRKDQLVS 30 (44)
T ss_dssp CCSCEETTTTEECSSHHHHHH
T ss_pred CcCeeCCCCCCccCCHHHHHH
Confidence 345789999999988776654
No 119
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.25 E-value=17 Score=23.92 Aligned_cols=21 Identities=10% Similarity=0.390 Sum_probs=15.7
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (45)
T 2epu_A 10 QKPFECTHCGKSFRAKGNLVT 30 (45)
T ss_dssp CCSEEETTTTEEESSHHHHHH
T ss_pred CcCccCCCCCCccCChHHHHH
Confidence 345789999999977665543
No 120
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=33.19 E-value=17 Score=23.93 Aligned_cols=21 Identities=14% Similarity=0.483 Sum_probs=16.5
Q ss_pred ceeecCCCCeeEeccchhhHH
Q 009948 490 QFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~~ 510 (522)
.-+.|+.||+.|-.-+++.+=
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emj_A 11 KPFECAECGKSFSISSQLATH 31 (46)
T ss_dssp CSEECSSSSCEESSHHHHHHH
T ss_pred CCEECCCCCcccCCHHHHHHH
Confidence 457899999999887766553
No 121
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.11 E-value=18 Score=23.52 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=16.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~ 30 (44)
T 2eox_A 10 SKSYNCNECGKAFTRIFHLTR 30 (44)
T ss_dssp CCCEEETTTTEEESSSHHHHT
T ss_pred CCCeECcccCcccCCHHHHHH
Confidence 345789999999988776654
No 122
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=33.10 E-value=7.2 Score=23.79 Aligned_cols=16 Identities=13% Similarity=0.559 Sum_probs=11.8
Q ss_pred eecCCCCeeEeccchh
Q 009948 492 WQCMDCNQLYWEGTQY 507 (522)
Q Consensus 492 ~~C~~CgkvyW~GsH~ 507 (522)
+.|+.|||.|-.-++.
T Consensus 3 ~~C~~C~k~f~~~~~L 18 (32)
T 2kfq_A 3 FACPACPKRFMRSDAL 18 (32)
T ss_dssp SSSSSSCTTHHHHHTT
T ss_pred CCCCCCCcccCCHHHH
Confidence 5799999988654443
No 123
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.97 E-value=17 Score=24.02 Aligned_cols=21 Identities=10% Similarity=0.344 Sum_probs=16.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eoz_A 10 EKPYSCNVCGKAFVLSAHLNQ 30 (46)
T ss_dssp CCSEEETTTTEEESSHHHHHH
T ss_pred CCCeECcccChhhCCHHHHHH
Confidence 345789999999988776654
No 124
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=32.96 E-value=18 Score=23.22 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=15.9
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~ 28 (42)
T 2el5_A 8 ENPYECSECGKAFNRKDQLIS 28 (42)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCccCCCcChhhCCHHHHHH
Confidence 345889999999987666543
No 125
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.51 E-value=18 Score=23.54 Aligned_cols=20 Identities=10% Similarity=0.383 Sum_probs=15.3
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2emb_A 11 KRYECSKCQATFNLRKHLIQ 30 (44)
T ss_dssp SSEECTTTCCEESCHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 45789999999977666543
No 126
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.42 E-value=18 Score=23.72 Aligned_cols=21 Identities=10% Similarity=0.376 Sum_probs=16.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytf_A 10 EKPFECSECQKAFNTKSNLIV 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCcCCCCCCcccCCHHHHHH
Confidence 345889999999987766654
No 127
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.36 E-value=22 Score=23.08 Aligned_cols=20 Identities=10% Similarity=0.491 Sum_probs=15.9
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-++..+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQRNYLVQ 30 (44)
T ss_dssp CSEECSSSSCEESSSHHHHH
T ss_pred CCeECCCCCchhCCHHHHHH
Confidence 45789999999988776654
No 128
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.16 E-value=15 Score=24.27 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=15.7
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2enh_A 11 KPYECDVCRKAFSHHASLTQ 30 (46)
T ss_dssp SSCBCTTTCCBCSSSHHHHH
T ss_pred CCcCCCCcCchhCCHHHHHH
Confidence 45789999999987766654
No 129
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.16 E-value=18 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.510 Sum_probs=16.1
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep3_A 10 EKPYRCAECGKAFTDRSNLFT 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCchhCCHHHHHH
Confidence 345889999999987666543
No 130
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.12 E-value=18 Score=23.74 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=16.1
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+.+.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eml_A 10 EKPYECSVCGKAFSHRQSLSV 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeeCCCcCCccCCHHHHHH
Confidence 345889999999987666554
No 131
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=32.05 E-value=18 Score=25.00 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=16.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 22 ~k~~~C~~C~k~f~~~~~L~~ 42 (54)
T 1yui_A 22 EQPATCPICYAVIRQSRNLRR 42 (54)
T ss_dssp SCCEECTTTCCEESSHHHHHH
T ss_pred CCCccCCCCCcccCCHHHHHH
Confidence 446889999999987666554
No 132
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.02 E-value=18 Score=23.74 Aligned_cols=22 Identities=9% Similarity=0.314 Sum_probs=17.1
Q ss_pred CceeecCCCCeeEeccchhhHH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~~ 510 (522)
..-|.|+.|||.|-.-+++.+=
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emh_A 10 ERPYICTVCGKAFTDRSNLIKH 31 (46)
T ss_dssp CCSEECTTTCCEESSHHHHHHH
T ss_pred CCCcCCCCCCchhCCHHHHHHH
Confidence 3458899999999887776653
No 133
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.01 E-value=19 Score=23.00 Aligned_cols=19 Identities=11% Similarity=0.611 Sum_probs=14.6
Q ss_pred ceeecCCCCeeEeccchhh
Q 009948 490 QFWQCMDCNQLYWEGTQYH 508 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~ 508 (522)
.-+.|+.||+.|-.-+++.
T Consensus 9 k~~~C~~C~k~f~~~~~L~ 27 (41)
T 2ept_A 9 RVYECQECGKSFRQKGSLT 27 (41)
T ss_dssp CCEECSSSCCEESSHHHHH
T ss_pred CCeECCCCCCCcCCHHHHH
Confidence 4578999999997665554
No 134
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=31.77 E-value=16 Score=29.39 Aligned_cols=15 Identities=33% Similarity=0.966 Sum_probs=12.9
Q ss_pred CceeecCCCCeeEec
Q 009948 489 LQFWQCMDCNQLYWE 503 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~ 503 (522)
..-|+|..||-||=+
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 568999999999964
No 135
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.77 E-value=19 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.434 Sum_probs=15.9
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2ytp_A 10 ERHYECSECGKAFARKSTLIM 30 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHH
T ss_pred CCCeECCcCCcccCCHHHHHH
Confidence 345789999999977666544
No 136
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=31.64 E-value=17 Score=29.99 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.9
Q ss_pred CceeecCCCCeeE
Q 009948 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~Cgkvy 501 (522)
.+-.+|+.||++|
T Consensus 77 g~~~RC~eCG~~f 89 (98)
T 1v54_F 77 GEAQRCPSCGTHY 89 (98)
T ss_dssp SSCEECTTTCCEE
T ss_pred CCceECCCCCeEE
Confidence 4478999999987
No 137
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.55 E-value=19 Score=23.62 Aligned_cols=22 Identities=14% Similarity=0.507 Sum_probs=16.8
Q ss_pred CceeecCCCCeeEeccchhhHH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~~ 510 (522)
..-+.|+.||+.|-.-+++.+=
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2eor_A 10 EKPYNCEECGKAFIHDSQLQEH 31 (46)
T ss_dssp CCSEECTTTCCEESSHHHHHHH
T ss_pred CcCccCCCCCCCcCCHHHHHHH
Confidence 3457899999999887766553
No 138
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.55 E-value=19 Score=23.28 Aligned_cols=21 Identities=10% Similarity=0.385 Sum_probs=16.2
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2eof_A 10 EKPYECNECQKAFNTKSNLMV 30 (44)
T ss_dssp CCSEECTTTCCEESCHHHHHH
T ss_pred CCCeECCCCCcccCCHhHHHH
Confidence 345889999999987766654
No 139
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.54 E-value=23 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.5
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2en3_A 10 EKPFQCKECGMNFSWSCSLFK 30 (46)
T ss_dssp CCSEECSSSCCEESSSHHHHH
T ss_pred CCCeeCcccChhhCCHHHHHH
Confidence 345789999999988776654
No 140
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=31.47 E-value=20 Score=20.45 Aligned_cols=18 Identities=11% Similarity=0.599 Sum_probs=14.3
Q ss_pred eecC--CCCeeEeccchhhH
Q 009948 492 WQCM--DCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~--~CgkvyW~GsH~~~ 509 (522)
+.|+ .||+.|-.-+++.+
T Consensus 3 ~~C~~~~C~k~f~~~~~l~~ 22 (29)
T 2ab3_A 3 YVCHFENCGRSFNDRRKLNR 22 (29)
T ss_dssp EEECSTTTCEEESSHHHHHH
T ss_pred CCCcCCcCcCccCCHHHHHH
Confidence 5799 99999987766544
No 141
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=31.38 E-value=16 Score=29.01 Aligned_cols=15 Identities=27% Similarity=0.804 Sum_probs=12.7
Q ss_pred CceeecCCCCeeEec
Q 009948 489 LQFWQCMDCNQLYWE 503 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~ 503 (522)
..-|+|+.||-||=+
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 458999999999953
No 142
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.33 E-value=23 Score=23.18 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=16.4
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2epw_A 11 KPCKCTECGKAFCWKSQLIM 30 (46)
T ss_dssp CSEECSSSCCEESSSHHHHH
T ss_pred CCeeCCCCCCccCCHHHHHH
Confidence 45789999999988777665
No 143
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.23 E-value=19 Score=23.62 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=16.4
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep2_A 10 EKPYECSICGKSFTKKSQLHV 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCcCCCCCCcccCCHHHHHH
Confidence 345789999999988776654
No 144
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=31.02 E-value=23 Score=32.17 Aligned_cols=12 Identities=17% Similarity=0.905 Sum_probs=10.4
Q ss_pred ceeecCCCCeeE
Q 009948 490 QFWQCMDCNQLY 501 (522)
Q Consensus 490 ~F~~C~~Cgkvy 501 (522)
.-|+|+.|++.|
T Consensus 61 g~~~CekC~~~~ 72 (181)
T 1l1o_C 61 GLYRCEKCDTEF 72 (181)
T ss_dssp TEEEETTTTEEE
T ss_pred CeEECCCCCCcC
Confidence 479999999986
No 145
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.92 E-value=20 Score=23.63 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=16.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em8_A 10 EKPYKCVECGKGYKRRLDLDF 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeECcccCchhCCHHHHHH
Confidence 345889999999987766654
No 146
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=30.68 E-value=8.7 Score=35.06 Aligned_cols=15 Identities=20% Similarity=0.665 Sum_probs=12.0
Q ss_pred CcCCCcccCCCCcCc
Q 009948 447 DQLMSRCTKCNGRFI 461 (522)
Q Consensus 447 ~~~~sRC~~CN~~l~ 461 (522)
-.++++|+.|...++
T Consensus 137 Gvv~a~~~~~g~~m~ 151 (179)
T 3m7n_A 137 GVLRALCSNCKTEMV 151 (179)
T ss_dssp EEEECBCTTTCCBCE
T ss_pred CEEEecccccCCceE
Confidence 346899999999874
No 147
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.60 E-value=24 Score=23.14 Aligned_cols=21 Identities=10% Similarity=0.534 Sum_probs=16.8
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yu8_A 10 EKPYKCNECGKVFTQNSHLAR 30 (46)
T ss_dssp CSSEECSSSCCEESSSHHHHH
T ss_pred CCCeECCcCCchhCCHHHHHH
Confidence 345889999999988777655
No 148
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=30.52 E-value=23 Score=24.48 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=11.4
Q ss_pred CCceeecCCCCeeE
Q 009948 488 NLQFWQCMDCNQLY 501 (522)
Q Consensus 488 ~~~F~~C~~Cgkvy 501 (522)
...|..|.+|||--
T Consensus 14 ~~~YRvC~~CgkPi 27 (44)
T 2lo3_A 14 PIQYRVCEKCGKPL 27 (44)
T ss_dssp CCCEEECTTTCCEE
T ss_pred cccchhhcccCCcc
Confidence 45799999999954
No 149
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.48 E-value=20 Score=23.52 Aligned_cols=21 Identities=10% Similarity=0.319 Sum_probs=15.9
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em7_A 10 EKPYKCEECGKGFICRRDLYT 30 (46)
T ss_dssp CCSEECSSSCCEESCHHHHHH
T ss_pred CcCccCCCccchhCCHHHHHH
Confidence 345789999999987666544
No 150
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=30.13 E-value=18 Score=38.54 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCceecCCCCCCCh--HHHHHhhhcCCc
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEP--RELIDQTSKEKR 401 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d--~~ll~~A~~E~R 401 (522)
=++||+|+.||+|.++.+ .|+ -.+...|.++|.
T Consensus 37 ii~Ry~r~~G~~v~~v~G--~D~hG~~ie~~a~k~g~ 71 (542)
T 3u1f_A 37 VIGRYHRVKGERVFALTG--TDEHGQKVAEAAKQKQV 71 (542)
T ss_dssp HHHHHHHHTTCCEEEEEE--EECCSHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCccccCc--cCcChHHHHHHHHHcCC
Confidence 358999999999999864 232 257777887773
No 151
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=30.10 E-value=57 Score=34.63 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=58.6
Q ss_pred hCCCCceEEEEechhhHHHHHhhcccCCCccC----cc-----CCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHHH
Q 009948 100 FVSPDILKLGFKFKQDLIYLSSTFCSQGCDIG----FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (522)
Q Consensus 100 L~~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~----~~-----~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~ 170 (522)
|.+.+...||||+-.|+..|...| .+--|. |. ....++| |...+....-. .. ....+|..|.+.
T Consensus 272 L~~~~kpiVgHN~l~Dl~~l~~~F--~~pLP~~~~eFk~~i~~lFP~i~D-TK~la~~~~~~--~~--~~~~~L~~l~~~ 344 (507)
T 3d45_A 272 IANSGKLVVGHNMLLDVMHTIHQF--YCPLPADLNEFKEMAICVFPRLLD-TKLMASTQPFK--DI--INNTSLAELEKR 344 (507)
T ss_dssp HHHHCCEEEESSCHHHHHHHHHHH--TCSCCSSHHHHHHHHHHHCSCEEE-HHHHTTSTTHH--HH--CCCCCHHHHHHH
T ss_pred HHhCCCeEEEechHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhCCceeE-hHhhhhcCccc--cc--cCCCCHHHHHHH
Confidence 334466789999999999988765 232220 00 0135889 54332210000 00 125689999887
Q ss_pred HcCCc--ccc---ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 171 LLDIS--LSK---ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (522)
Q Consensus 171 ~Lg~~--L~K---~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~ 217 (522)
+-..+ .+. ..+...+. .+....+=|+.||+.+-.++-.|...|.
T Consensus 345 l~~~~~~~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 345 LKETPFDPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp TTSTTCCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccCCCCCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 64221 111 11111121 1122235599999999999999997764
No 152
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=29.94 E-value=20 Score=26.12 Aligned_cols=12 Identities=25% Similarity=0.905 Sum_probs=10.5
Q ss_pred CceeecCCCCee
Q 009948 489 LQFWQCMDCNQL 500 (522)
Q Consensus 489 ~~F~~C~~Cgkv 500 (522)
..||.|..||..
T Consensus 41 T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 41 TIFYKCTKCGHT 52 (57)
T ss_dssp EEEEEESSSCCE
T ss_pred cEEEEcCCCCCE
Confidence 469999999986
No 153
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.75 E-value=21 Score=23.46 Aligned_cols=20 Identities=10% Similarity=0.569 Sum_probs=15.9
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em2_A 11 KPFKCKECGKAFRQNIHLAS 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCEECCcCCchhCCHHHHHH
Confidence 45789999999988776654
No 154
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.71 E-value=22 Score=23.09 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=16.5
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~ 28 (44)
T 2emx_A 8 EKPFGCSCCEKAFSSKSYLLV 28 (44)
T ss_dssp CCCEECSSSSCEESSHHHHHH
T ss_pred CcCccCCCCCcccCCHHHHHH
Confidence 345889999999988776654
No 155
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=29.68 E-value=40 Score=30.87 Aligned_cols=53 Identities=19% Similarity=0.574 Sum_probs=30.8
Q ss_pred HHHHHHHHHcccccccCcCCCcccC--CCC-cCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeEecc
Q 009948 431 QQLLEVIEAFQLKISEDQLMSRCTK--CNG-RFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEG 504 (522)
Q Consensus 431 eQl~~v~~~f~l~~~~~~~~sRC~~--CN~-~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~G 504 (522)
.-|...++.|. ...|.+|++ ||+ +++ |+. ...+| .....--.||+|+-||=.-
T Consensus 92 ~Gl~~M~eKy~-----~g~FG~CPRv~C~~q~~L--PvG----------lSd~p----g~~~VKlyCP~C~DvY~p~ 147 (182)
T 1qf8_A 92 RGIAQMLEKYQ-----QGDFGYCPRVYCENQPML--PIG----------LSDIP----GEAMVKLYCPKCMDVYTPK 147 (182)
T ss_dssp HHHHHHHHHHH-----TTTTCBCCBGGGTTCBCE--EEC----------SCSST----TSCBCEEECTTTCCEECCS
T ss_pred HHHHHHHHhhh-----cCcCCCCCccccCCCccc--CCc----------cCCCC----CCCceEEECCCccceeCCC
Confidence 44666677774 334889998 665 332 332 11122 2234456699999999553
No 156
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.57 E-value=21 Score=23.39 Aligned_cols=21 Identities=10% Similarity=0.558 Sum_probs=16.2
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2eq0_A 10 EKPYKCHECGKVFRRNSHLAR 30 (46)
T ss_dssp CCCEECTTTCCEESSHHHHHH
T ss_pred CCCeECCCCCchhCCHHHHHH
Confidence 345889999999987766654
No 157
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.49 E-value=23 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.453 Sum_probs=16.1
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQRVHLTQ 30 (46)
T ss_dssp CCSEECTTTCCEESSSHHHHT
T ss_pred CCCeECCCCCcccCCHHHHHH
Confidence 345889999999987766543
No 158
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.43 E-value=22 Score=23.35 Aligned_cols=21 Identities=10% Similarity=0.507 Sum_probs=15.9
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+.+.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ene_A 10 EKPYKCNECGKVFRHNSYLSR 30 (46)
T ss_dssp SSSEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCchhCChHHHHH
Confidence 345889999999987666544
No 159
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=29.37 E-value=31 Score=32.03 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcccccccCcCCCcccCCCCc
Q 009948 430 NQQLLEVIEAFQLKISEDQLMSRCTKCNGR 459 (522)
Q Consensus 430 ~eQl~~v~~~f~l~~~~~~~~sRC~~CN~~ 459 (522)
.+.+..+++.+... .....-+|..|+-.
T Consensus 153 ~~~~~~ll~~l~~~--~~~~~~~C~~CG~i 180 (202)
T 1yuz_A 153 AERYLAAYNDIDAP--DDDKFHLCPICGYI 180 (202)
T ss_dssp HHHHHHHHHTTTCC--CSCCEEECSSSCCE
T ss_pred HHHHHHHHHHHhcC--CCCcEEEECCCCCE
Confidence 34566666665433 23346789999984
No 160
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=29.33 E-value=21 Score=26.11 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=13.6
Q ss_pred eeecCCCCeeEeccchhhH
Q 009948 491 FWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 491 F~~C~~CgkvyW~GsH~~~ 509 (522)
=|.|+.|||.|-.-+++.+
T Consensus 4 py~C~~C~k~F~~~~~L~~ 22 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSR 22 (60)
T ss_dssp CEECTTTCCEESSHHHHHH
T ss_pred CccCCCCCCEeCCHHHHHH
Confidence 3678888888877666554
No 161
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.30 E-value=15 Score=24.17 Aligned_cols=21 Identities=10% Similarity=0.515 Sum_probs=15.9
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2enf_A 10 EKPYKCNECGKVFTQNSHLVR 30 (46)
T ss_dssp CCSCBCSSSCCBCSSHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHH
Confidence 345789999999987666554
No 162
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.24 E-value=16 Score=23.57 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=15.2
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+.+.+
T Consensus 10 k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2eos_A 10 KPYPCEICGTRFRHLQTLKS 29 (42)
T ss_dssp CCBCCSSSCCCBSSHHHHHH
T ss_pred CCEECCCCCCccCCHHHHHH
Confidence 45789999999987666543
No 163
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.21 E-value=21 Score=23.42 Aligned_cols=21 Identities=19% Similarity=0.607 Sum_probs=16.0
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2en1_A 10 EKPFKCEECGKRFTQNSQLHS 30 (46)
T ss_dssp CCSEEETTTTEEESSHHHHHH
T ss_pred CCCeeCCCCCcccCCHHHHHH
Confidence 345889999999987666544
No 164
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=29.18 E-value=28 Score=35.78 Aligned_cols=47 Identities=17% Similarity=0.465 Sum_probs=28.0
Q ss_pred HHHHHHHc-ccccccCcCCCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCe
Q 009948 433 LLEVIEAF-QLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQ 499 (522)
Q Consensus 433 l~~v~~~f-~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgk 499 (522)
+.+|+..+ .++........+||.||..- |.........+|.|-+||+
T Consensus 16 I~dvi~~~v~lkk~G~~~~~~CPfh~ekt--------------------pSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 16 IVDVISEYLNLEKVGSNYRTNCPFHPDDT--------------------PSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp HHHHHHHHSCCEEETTEEEECCSSSCCSS--------------------CCEEEETTTTEEEETTTCC
T ss_pred HHHHHHHhcccccCCCeEEeeCcCCCCCC--------------------CeEEEECCCCEEEECCCCC
Confidence 45666655 44434444456899998731 1111222346999999995
No 165
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=29.14 E-value=22 Score=23.35 Aligned_cols=21 Identities=10% Similarity=0.368 Sum_probs=16.0
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2el6_A 10 VNPYKCSQCEKSFSGKLRLLV 30 (46)
T ss_dssp CCSEECSSSSCEESSHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHH
Confidence 345789999999987666544
No 166
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.07 E-value=14 Score=23.65 Aligned_cols=19 Identities=11% Similarity=0.425 Sum_probs=14.5
Q ss_pred ceeecCCCCeeEeccchhh
Q 009948 490 QFWQCMDCNQLYWEGTQYH 508 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~ 508 (522)
.-+.|+.||+.|-.-+++.
T Consensus 10 k~~~C~~C~k~f~~~~~L~ 28 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGSLI 28 (42)
T ss_dssp CSBCCTTTTCCBSSHHHHH
T ss_pred CCeeCCCccchhCCHHHHH
Confidence 4578999999997765544
No 167
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.07 E-value=21 Score=23.40 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=15.8
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.|||.|-.-+.+.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ysp_A 10 EKPYKCEKCGKGYNSKFNLDM 30 (46)
T ss_dssp CCSEEETTTTEEESCHHHHHH
T ss_pred CCCeECCCCCCccCCHHHHHH
Confidence 345889999999977665544
No 168
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.01 E-value=22 Score=23.29 Aligned_cols=21 Identities=10% Similarity=0.343 Sum_probs=16.5
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytj_A 10 EKPYICAECGKAFTIRSNLIK 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCeECCCCChhhCCHHHHHH
Confidence 345889999999987776654
No 169
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.79 E-value=26 Score=22.90 Aligned_cols=21 Identities=10% Similarity=0.403 Sum_probs=16.6
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eow_A 10 EKPYKCNECGKAFRARSSLAI 30 (46)
T ss_dssp CCCEECTTSCCEESSHHHHHH
T ss_pred CCCeeccccCChhcCHHHHHH
Confidence 345889999999988776654
No 170
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.79 E-value=16 Score=23.41 Aligned_cols=20 Identities=10% Similarity=0.564 Sum_probs=15.6
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 9 k~~~C~~C~k~f~~~~~L~~ 28 (42)
T 2yte_A 9 KPYSCAECKETFSDNNRLVQ 28 (42)
T ss_dssp CSCBCTTTCCBCSSHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 34789999999987776654
No 171
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.78 E-value=23 Score=23.32 Aligned_cols=22 Identities=9% Similarity=0.321 Sum_probs=16.9
Q ss_pred CceeecCCCCeeEeccchhhHH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~~ 510 (522)
..-+.|+.|||.|-.-+++.+=
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2eoo_A 10 ERPYGCNECGKNFGRHSHLIEH 31 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHH
T ss_pred CCCEEccccCcccCCHHHHHHH
Confidence 3457899999999887776543
No 172
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.54 E-value=23 Score=23.22 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=16.9
Q ss_pred CceeecCCCCeeEeccchhhHH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~~ 510 (522)
..-|.|+.|||.|-.-+++.+=
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emy_A 10 ENPYECHECGKAFSRKYQLISH 31 (46)
T ss_dssp SCCEECSSSCCEESSHHHHHHH
T ss_pred CcCcCCCCCCcccCcHHHHHHH
Confidence 3458899999999887776543
No 173
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.50 E-value=52 Score=29.37 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=35.0
Q ss_pred EEEccCChHHHHHHHHHHcccccccCcCCCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 422 YRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 422 ~~v~~~~~~eQl~~v~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
+.|.-.-...+|..+|+.|= .-|-.|..|+.+-.. +.++ -+...-|-.|..||...
T Consensus 81 lii~G~~~~~~i~~~L~~yI------~~YVlC~~C~sPdT~--L~~~----------------~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 81 YIVNGSHEANKLQDMLDGFI------KKFVLCPECENPETD--LHVN----------------PKKQTIGNSCKACGYRG 136 (157)
T ss_dssp EEEEBCCCHHHHHHHHHHHH------HHTTSCTTTCCSCCE--EEEE----------------TTTTEEEEECSSSCCEE
T ss_pred EEEEeeeCHHHHHHHHHHHH------HHeEECCCCCCCccE--EEEe----------------cCCCEEEEEccCCCCCC
Confidence 34443334578888888881 225679999996421 1000 01224588899999865
Q ss_pred ecc
Q 009948 502 WEG 504 (522)
Q Consensus 502 W~G 504 (522)
=-.
T Consensus 137 ~V~ 139 (157)
T 2e9h_A 137 MLD 139 (157)
T ss_dssp ECC
T ss_pred ccc
Confidence 444
No 174
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.29 E-value=23 Score=23.25 Aligned_cols=21 Identities=10% Similarity=0.447 Sum_probs=15.5
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.|||.|-.-+.+.+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2emf_A 10 GKHFECTECGKAFTRKSTLSM 30 (46)
T ss_dssp SCCEECSSSCCEESCHHHHHH
T ss_pred CCCeECCCCCchhCCHHHHHH
Confidence 345889999999977655543
No 175
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.17 E-value=24 Score=23.17 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=16.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.|+|.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep0_A 10 EKPYKCDVCHKSFRYGSSLTV 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeeCcccCcccCChHHHHH
Confidence 345889999999987766654
No 176
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=28.14 E-value=26 Score=27.19 Aligned_cols=15 Identities=27% Similarity=0.771 Sum_probs=12.3
Q ss_pred ceeecCCCCeeEecc
Q 009948 490 QFWQCMDCNQLYWEG 504 (522)
Q Consensus 490 ~F~~C~~CgkvyW~G 504 (522)
-.|.|..||+.|=.|
T Consensus 43 GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 43 GIWTCSCCKKTVAGG 57 (72)
T ss_dssp SCBCCSSSCCCCCCS
T ss_pred CeEECCCCCCEEeCC
Confidence 479999999987554
No 177
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.06 E-value=30 Score=23.09 Aligned_cols=21 Identities=10% Similarity=0.442 Sum_probs=16.8
Q ss_pred CceeecC--CCCeeEeccchhhH
Q 009948 489 LQFWQCM--DCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~--~CgkvyW~GsH~~~ 509 (522)
..-|.|+ .|||.|-.-++..+
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~ 38 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRS 38 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHH
Confidence 4568895 89999999887765
No 178
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.05 E-value=17 Score=24.05 Aligned_cols=20 Identities=10% Similarity=0.360 Sum_probs=15.8
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytq_A 11 KPYGCSECGKAFSSKSYLII 30 (46)
T ss_dssp CSCBCSSSCCBCSCHHHHHH
T ss_pred CCcCCCccChhhCChHHHHH
Confidence 45789999999988766654
No 179
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.66 E-value=18 Score=23.74 Aligned_cols=20 Identities=10% Similarity=0.446 Sum_probs=15.3
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eq3_A 11 KPYECNQCGKAFSVRSSLTT 30 (46)
T ss_dssp CSSEETTTTEECSSHHHHHH
T ss_pred CCeECCCCChhhCCHHHHHH
Confidence 45789999999977666543
No 180
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.64 E-value=15 Score=24.28 Aligned_cols=21 Identities=14% Similarity=0.464 Sum_probs=15.8
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eq2_A 10 GKPYQCNECGKAFSQTSKLAR 30 (46)
T ss_dssp SCSSSCCSSCCCCSSHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHH
Confidence 345789999999987666554
No 181
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=27.44 E-value=25 Score=22.97 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=15.5
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2el4_A 11 KPYGCSQCAKTFSLKSQLIV 30 (46)
T ss_dssp CSEECSSSSCEESSHHHHHH
T ss_pred CceECCCCCchhCCHHHHHH
Confidence 45789999999987666544
No 182
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.37 E-value=17 Score=23.89 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=15.2
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2emg_A 11 NPFICSECGKVFTHKTNLII 30 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHHH
T ss_pred CCEECCccCcccCCHHHHHH
Confidence 34789999999977665544
No 183
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=27.34 E-value=29 Score=23.56 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.4
Q ss_pred CceeecCCCCeeE
Q 009948 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~Cgkvy 501 (522)
...+.|+.||+.+
T Consensus 7 ~~~~~C~~C~~~i 19 (39)
T 2i5o_A 7 EDQVPCEKCGSLV 19 (39)
T ss_dssp CCEEECTTTCCEE
T ss_pred CCCcccccccCcC
Confidence 3467899999985
No 184
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=27.30 E-value=19 Score=31.00 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=9.2
Q ss_pred eeecCCCCeeE
Q 009948 491 FWQCMDCNQLY 501 (522)
Q Consensus 491 F~~C~~Cgkvy 501 (522)
--+||.||++|
T Consensus 99 ~L~Cp~cgr~y 109 (125)
T 3q87_A 99 SLRCDMCGLIY 109 (125)
T ss_dssp EEEETTTCCEE
T ss_pred EEECCCCCCEe
Confidence 45699999999
No 185
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.30 E-value=25 Score=23.04 Aligned_cols=21 Identities=14% Similarity=0.597 Sum_probs=16.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytk_A 10 EKPYKCNECGKVFTQNSHLTN 30 (46)
T ss_dssp SCSEECSSSCCEESSHHHHHH
T ss_pred CCCEeCCcCCCccCCHHHHHH
Confidence 345889999999987666654
No 186
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.26 E-value=18 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.679 Sum_probs=15.5
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yth_A 11 KPFQCEECGKRFTQNSHLHS 30 (46)
T ss_dssp SSBCCSSSCCCBSSHHHHHH
T ss_pred cCCCCCCCCcccCCHHHHHH
Confidence 45789999999987666554
No 187
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=27.20 E-value=25 Score=22.96 Aligned_cols=21 Identities=10% Similarity=0.343 Sum_probs=15.7
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em9_A 10 EKPYNCKECGKSFRWASCLLK 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CcCeECCccccccCChHHHHH
Confidence 345789999999977665543
No 188
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.16 E-value=25 Score=23.01 Aligned_cols=20 Identities=15% Similarity=0.599 Sum_probs=15.8
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2enc_A 11 KPFKCEECGKGFYTNSQCYS 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCcCCCCCCCcCCChHHHHH
Confidence 45789999999987766654
No 189
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=27.01 E-value=32 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecC-hhHHH
Q 009948 366 EGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRD-AKLLR 412 (522)
Q Consensus 366 g~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~RiiLTrd-~~l~~ 412 (522)
+.|...||..|+-. +..|.-++..|...|-.|+|+| ++|.+
T Consensus 82 ~~l~~~~~~~g~~~------~~~D~lIaA~A~~~~~~lvT~d~~df~~ 123 (134)
T 3zvk_A 82 GELRTELEQKGLII------GNNDLLIASHAIAENATLVTNNIKEFKR 123 (134)
T ss_dssp HHHHHHHHHTTCCC------CHHHHHHHHHHHHHTCEEEESSTTTSCS
T ss_pred HHHHHHHHHcCCCC------CccHHHHHHHHHHCCCEEEECCHHHhcC
Confidence 35666677677641 2457789999999999999999 66643
No 190
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.97 E-value=18 Score=23.93 Aligned_cols=21 Identities=10% Similarity=0.377 Sum_probs=15.7
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eon_A 10 EKPYKCQVCGKAFRVSSHLVQ 30 (46)
T ss_dssp CCSCBCSSSCCBCSSHHHHHH
T ss_pred CcccCCCCCCcccCcHHHHHH
Confidence 345789999999987665543
No 191
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=26.93 E-value=26 Score=22.98 Aligned_cols=21 Identities=14% Similarity=0.566 Sum_probs=16.0
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ema_A 10 EKRYKCNECGKVFSRNSQLSQ 30 (46)
T ss_dssp SCCEECSSSCCEESSHHHHHH
T ss_pred CcCcCCCCCcchhCCHHHHHH
Confidence 345789999999977666554
No 192
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.83 E-value=25 Score=24.24 Aligned_cols=21 Identities=10% Similarity=0.301 Sum_probs=16.5
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.|++.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNG 30 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHH
Confidence 345889999999987776654
No 193
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=26.82 E-value=23 Score=23.31 Aligned_cols=20 Identities=10% Similarity=0.486 Sum_probs=16.2
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ely_A 11 KPFKCVECGKGFSRRSALNV 30 (46)
T ss_dssp CSBCCSSSCCCBSSTTHHHH
T ss_pred CCcccCccCcccCCHHHHHH
Confidence 45789999999988777665
No 194
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.74 E-value=16 Score=25.99 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=10.1
Q ss_pred ceeecCCCCeeEe
Q 009948 490 QFWQCMDCNQLYW 502 (522)
Q Consensus 490 ~F~~C~~CgkvyW 502 (522)
.-+.||.|++.|=
T Consensus 11 ~~~~CPrCn~~f~ 23 (49)
T 2e72_A 11 GRKICPRCNAQFR 23 (49)
T ss_dssp SCCCCTTTCCCCS
T ss_pred CceeCCccccccc
Confidence 3567999998873
No 195
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.69 E-value=26 Score=22.33 Aligned_cols=21 Identities=10% Similarity=0.358 Sum_probs=15.5
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
+.-|.|+.||+.|=.-+++.+
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2en2_A 9 EKPYKCETCGARFVQVAHLRA 29 (42)
T ss_dssp SCSEECTTTCCEESSHHHHHH
T ss_pred CCCEeCCCcChhhCCHHHHHH
Confidence 345789999999977665543
No 196
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=26.54 E-value=18 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.513 Sum_probs=16.5
Q ss_pred ceeecCCCCeeEeccchhhHH
Q 009948 490 QFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~~ 510 (522)
.-+.|+.|||.|-.-+++.+=
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emk_A 11 KPYECKECGKAFSQTTHLIQH 31 (46)
T ss_dssp CSCBCSSSCCBCSCHHHHHHH
T ss_pred CceECCCCCchhCCHHHHHHH
Confidence 447899999999887776653
No 197
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=26.50 E-value=47 Score=27.54 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecC-hhHHH
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRD-AKLLR 412 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~RiiLTrd-~~l~~ 412 (522)
.|...+|..|+-. +..|.-++..|...|-.|+|+| ++|.+
T Consensus 82 ~l~~~~~~~g~~~------~~~D~lIaA~A~~~~~~lvT~d~~dF~~ 122 (132)
T 3tnd_A 82 QIRAELARQGRPV------GPFDQMIAGHARSRGLIIVTNNTREFER 122 (132)
T ss_dssp HHHHHHHHHTCCC------CHHHHHHHHHHHHTTCEEEESCCHHHHT
T ss_pred HHHHHHHHCCCCC------CchHHHHHHHHHHcCCEEEECCHHHhCC
Confidence 4555555567541 2457789999999999999999 77754
No 198
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.43 E-value=17 Score=23.70 Aligned_cols=21 Identities=10% Similarity=0.420 Sum_probs=15.9
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2eou_A 10 KTTSECQECGKIFRHSSLLIE 30 (44)
T ss_dssp SCCCCCTTTCCCCSSHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHH
Confidence 345789999999987666554
No 199
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=26.37 E-value=22 Score=32.64 Aligned_cols=15 Identities=40% Similarity=1.041 Sum_probs=12.2
Q ss_pred ceeecCCCCeeEeccc
Q 009948 490 QFWQCMDCNQLYWEGT 505 (522)
Q Consensus 490 ~F~~C~~CgkvyW~Gs 505 (522)
..|+|+.||-|| .|.
T Consensus 154 ~~~~C~~CG~~~-~g~ 168 (191)
T 1lko_A 154 TKWRCRNCGYVH-EGT 168 (191)
T ss_dssp EEEEETTTCCEE-EEE
T ss_pred ceEEECCCCCEe-eCC
Confidence 489999999997 353
No 200
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.36 E-value=17 Score=23.59 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=15.3
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2en7_A 11 KPYVCNECGKAFRSKSYLII 30 (44)
T ss_dssp SSSCCTTTCCCCSSHHHHHH
T ss_pred cCeECCCCCCccCCHHHHHH
Confidence 45789999999987666554
No 201
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=26.31 E-value=21 Score=38.45 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCc
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~R 401 (522)
-|||+||+.||+|.++...+.-+..+...|.++|.
T Consensus 54 ~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~ 88 (564)
T 3kfl_A 54 VLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGV 88 (564)
T ss_dssp HHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCC
Confidence 47999999999998876533223467777877763
No 202
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.30 E-value=21 Score=31.73 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=11.0
Q ss_pred HHHHHHHHcccccc
Q 009948 432 QLLEVIEAFQLKIS 445 (522)
Q Consensus 432 Ql~~v~~~f~l~~~ 445 (522)
.+..+.+.+||.+.
T Consensus 106 ~l~~vA~~~Gv~v~ 119 (165)
T 2lcq_A 106 NVQNIASLLGLRFR 119 (165)
T ss_dssp HHHHHHHHTTCCEE
T ss_pred HHHHHHHHCCCeEE
Confidence 47888888988764
No 203
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.27 E-value=20 Score=23.52 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=16.8
Q ss_pred CceeecCCCCeeEeccchhhHH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~~ 510 (522)
+.-+.|+.|||.|-.-+++.+=
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H 29 (45)
T 2epq_A 8 EKPYSCPVCGLRFKRKDRMSYH 29 (45)
T ss_dssp CCSSEETTTTEECSCHHHHHHH
T ss_pred CCCCcCCCCCcccCCHHHHHHH
Confidence 3457899999999877776553
No 204
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.10 E-value=27 Score=22.81 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=15.1
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2en8_A 11 KSHTCDECGKNFCYISALRI 30 (46)
T ss_dssp SSEECTTTCCEESSHHHHHH
T ss_pred CCeECCCcCcccCCHHHHHH
Confidence 45789999999977665543
No 205
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.08 E-value=17 Score=23.87 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=15.7
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ep1_A 10 EKPYECSDCGKSFIKKSQLHV 30 (46)
T ss_dssp CCSSCCSSSCCCCSSHHHHHH
T ss_pred CCCcCCCCCCchhCCHHHHHH
Confidence 345789999999987666544
No 206
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=26.05 E-value=72 Score=26.12 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=10.6
Q ss_pred CceeecCCCCeeE
Q 009948 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~Cgkvy 501 (522)
..--.|+.||..|
T Consensus 51 ~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 51 HEALITRDRKQVF 63 (97)
T ss_dssp SEEEECTTSCEEE
T ss_pred CCeEEcCCCCCCc
Confidence 3456799999998
No 207
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.03 E-value=27 Score=22.84 Aligned_cols=20 Identities=15% Similarity=0.624 Sum_probs=16.0
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytd_A 11 KPYKCSECGKAFHRHTHLNE 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred cCeECCCCCCeeCChHHHHH
Confidence 45789999999988776654
No 208
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=25.97 E-value=48 Score=31.12 Aligned_cols=54 Identities=20% Similarity=0.625 Sum_probs=31.4
Q ss_pred HHHHHHHHHcccccccCcCCCcccC--CCCc-CccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeEeccc
Q 009948 431 QQLLEVIEAFQLKISEDQLMSRCTK--CNGR-FIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEGT 505 (522)
Q Consensus 431 eQl~~v~~~f~l~~~~~~~~sRC~~--CN~~-l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~Gs 505 (522)
.-|...++.|. ...|.+|++ ||+. ++ |+ |...+| .....--.||.|.-||=.-|
T Consensus 92 ~Gl~~M~eKY~-----~g~FG~CPRv~C~~q~~L--Pv----------GlSD~p----g~~~VKlyCP~C~DvY~P~s 148 (215)
T 4dgl_A 92 RGIAQMLEKYQ-----QGDFGYCPRVYCENQPML--PI----------GLSDIP----GEAMVKLYCPKCMDVYTPKS 148 (215)
T ss_dssp HHHHHHHHHHH-----TTTTCBCCBGGGTSCBCE--EE----------ESCSST----TSCBEEEECTTTCCEECCSS
T ss_pred HHHHHHHHHHh-----cCCCCcCCccccCCCcee--cc----------ccCCCC----CccceeEeCCCcccccCCCc
Confidence 45666677774 334899998 6653 32 32 111222 12334556999999997543
No 209
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.91 E-value=27 Score=22.88 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=15.6
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em5_A 10 TKSHQCHECGRGFTLKSHLNQ 30 (46)
T ss_dssp SCSEECSSSCCEESSHHHHHH
T ss_pred CCCeECCcCCCccCCHHHHHH
Confidence 345789999999977665543
No 210
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.87 E-value=18 Score=23.87 Aligned_cols=21 Identities=10% Similarity=0.411 Sum_probs=16.5
Q ss_pred ceeecCCCCeeEeccchhhHH
Q 009948 490 QFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~~ 510 (522)
.-|.|+.|++.|-.-+++.+=
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSHLAGH 31 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHHH
Confidence 457899999999887776543
No 211
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=25.81 E-value=32 Score=29.83 Aligned_cols=33 Identities=18% Similarity=0.580 Sum_probs=21.1
Q ss_pred cccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeEec
Q 009948 452 RCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWE 503 (522)
Q Consensus 452 RC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~ 503 (522)
=|+.||..|.++. . . ....-.|.|+.||-.+-.
T Consensus 26 FCPeCgNmL~pke----d---------~------~~~~l~~~CrtCgY~~~~ 58 (133)
T 3qt1_I 26 FCRDCNNMLYPRE----D---------K------ENNRLLFECRTCSYVEEA 58 (133)
T ss_dssp BCTTTCCBCBCCB----C---------T------TTCCBCCBCSSSCCBCCC
T ss_pred eCCCCCCEeeECc----c---------C------CCceeEEECCCCCCcEEc
Confidence 4999999885311 0 0 012457899999976643
No 212
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=25.77 E-value=22 Score=37.86 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 400 (522)
-|||+||..||+|.++.+.+.-+..+...|.++|
T Consensus 53 ~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g 86 (536)
T 4dlp_A 53 AMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEG 86 (536)
T ss_dssp HHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcC
Confidence 4699999999999887653322456777777665
No 213
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.77 E-value=19 Score=23.69 Aligned_cols=21 Identities=10% Similarity=0.445 Sum_probs=15.6
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2em6_A 10 EKCYKCDVCGKEFSQSSHLQT 30 (46)
T ss_dssp CCCCBCSSSCCBCSSHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHH
Confidence 345789999999977665543
No 214
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.72 E-value=42 Score=25.36 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=8.8
Q ss_pred CCcccCCCCcC
Q 009948 450 MSRCTKCNGRF 460 (522)
Q Consensus 450 ~sRC~~CN~~l 460 (522)
-.||..|+..+
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wg2_A 15 NNRCFSCNKKV 25 (64)
T ss_dssp SCSCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 47999999864
No 215
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=25.15 E-value=22 Score=23.22 Aligned_cols=21 Identities=10% Similarity=0.339 Sum_probs=15.9
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
+.-|.|+.|||.|=.-++..+
T Consensus 6 ekp~~C~~CgK~F~~~s~L~~ 26 (36)
T 1fv5_A 6 PARFMCLPCGIAFSSPSTLEA 26 (36)
T ss_dssp CCCCEETTTTEECSCHHHHHH
T ss_pred ccCeECCCCCCccCCHhHccC
Confidence 456889999999976666544
No 216
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.14 E-value=17 Score=23.89 Aligned_cols=20 Identities=10% Similarity=0.607 Sum_probs=15.2
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2yti_A 11 KPYKCNECGKVFTQNSHLAR 30 (46)
T ss_dssp CTTCCSSSCCCCSSHHHHHH
T ss_pred cCeECCCCCcccCChhHHHH
Confidence 45789999999977666544
No 217
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=25.11 E-value=84 Score=28.52 Aligned_cols=47 Identities=17% Similarity=-0.041 Sum_probs=28.1
Q ss_pred hhHHHHHHhhC----CCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeH
Q 009948 91 SIWELLKELFV----SPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDI 141 (522)
Q Consensus 91 ~~~~~L~~lL~----~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dl 141 (522)
++...|.+++. ..+.+.||||+.+|...|.+.+.-+|.. ....++|+
T Consensus 87 ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~----~~~~~iDv 137 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQF----FHYRHLDV 137 (186)
T ss_dssp HHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHH----SCSCEEEH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCC----CCCcEEeH
Confidence 34555556663 1234569999999999997754322210 12457784
No 218
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.10 E-value=26 Score=32.52 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=12.4
Q ss_pred CceeecCCCCeeEe
Q 009948 489 LQFWQCMDCNQLYW 502 (522)
Q Consensus 489 ~~F~~C~~CgkvyW 502 (522)
..+|+|+.||-+|-
T Consensus 169 ~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 169 DKFHLCPICGYIHK 182 (202)
T ss_dssp CCEEECSSSCCEEE
T ss_pred CcEEEECCCCCEEc
Confidence 46999999999996
No 219
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.07 E-value=19 Score=23.74 Aligned_cols=20 Identities=10% Similarity=0.514 Sum_probs=15.6
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eoh_A 11 KPYECKECRKTFIQIGHLNQ 30 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHH
T ss_pred CCcCCCCcCchhCCHHHHHH
Confidence 44789999999987766654
No 220
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=24.94 E-value=1.1e+02 Score=31.73 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=56.9
Q ss_pred CCceEEEEechhhHHHHHhhcccCCCccC-cc--------CCCceeeHHHHHHHhhccccCCCCCcCcccHHHHHHHHcC
Q 009948 103 PDILKLGFKFKQDLIYLSSTFCSQGCDIG-FD--------RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLD 173 (522)
Q Consensus 103 ~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~-~~--------~~~~~~Dlt~La~yLl~~~~~~~~~~~~~gL~~L~~~~Lg 173 (522)
..-+.||||+-.|+..+...| .|--|. ++ ....++| |...+.... + +.. ....+|+.|...+-.
T Consensus 280 s~KpiVGHN~llDl~~l~~~F--~~pLP~~~~eFk~~i~~lFP~i~D-TK~la~~~~--~-~~~-~~~~sL~~l~~~l~~ 352 (430)
T 2a1r_A 280 SGKLVIGHNMLLDVMHTVHQF--YCPLPADLSEFKEMTTCVFPRLLD-TKLMASTQP--F-KDI-INNTSLAELEKRLKE 352 (430)
T ss_dssp HCCEEEESSCHHHHHHHHHHH--TCCCCSSHHHHHHHHHHHCSSEEE-HHHHHTSTT--T-TTT-CSCCSHHHHHHHTTS
T ss_pred CCCceEechhHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHCCceee-hHHhhhccc--h-hhc-cCCCCHHHHHHHHHh
Confidence 344569999999999887765 232220 00 0135889 644331111 0 111 135689998776543
Q ss_pred Ccc--ccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009948 174 ISL--SKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (522)
Q Consensus 174 ~~L--~K~~q~sdW~~RPL~~~qi~YAA~DA~~ll~L~~~L~~~L~ 217 (522)
.+. ++-+.......-.-..++.+-|+.||+.+-.++-.|...|.
T Consensus 353 ~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~ 398 (430)
T 2a1r_A 353 TPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398 (430)
T ss_dssp TTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 221 11000000000001123445699999999999999998774
No 221
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.86 E-value=29 Score=22.59 Aligned_cols=21 Identities=10% Similarity=0.392 Sum_probs=16.2
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2emm_A 10 ERPHKCNECGKSFIQSAHLIQ 30 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHH
T ss_pred CCCeeCCCCChhhCCHHHHHH
Confidence 345889999999987666554
No 222
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.80 E-value=30 Score=22.58 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=15.2
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+.+.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eme_A 11 KPYVCDYCGKAFGLSAELVR 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred CCeECCCCChhhCCHHHHHH
Confidence 45889999999977655543
No 223
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.70 E-value=28 Score=23.16 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=15.8
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNR 30 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHH
T ss_pred CcCeeCCCCCcccCCHHHHHH
Confidence 345789999999977666544
No 224
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.66 E-value=21 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.644 Sum_probs=15.5
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (47)
T 2epx_A 11 KPYECIECGKAFIQNTSLIR 30 (47)
T ss_dssp CSBCCSSSCCCBSSHHHHHH
T ss_pred CCEECCccCchhCChHHHHH
Confidence 45789999999987766554
No 225
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=24.56 E-value=56 Score=28.88 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 400 (522)
=++..||..||+|+++.. ..+.+++++.|++++
T Consensus 37 ~va~~l~~~G~eVi~lG~-~~p~e~lv~aa~~~~ 69 (161)
T 2yxb_A 37 VVARALRDAGFEVVYTGL-RQTPEQVAMAAVQED 69 (161)
T ss_dssp HHHHHHHHTTCEEECCCS-BCCHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEECCC-CCCHHHHHHHHHhcC
Confidence 458899999999998864 356678888887653
No 226
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=24.55 E-value=26 Score=30.29 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.8
Q ss_pred CceeecCCCCeeE
Q 009948 489 LQFWQCMDCNQLY 501 (522)
Q Consensus 489 ~~F~~C~~Cgkvy 501 (522)
.+-.+|+.||++|
T Consensus 108 g~p~RCpeCG~~f 120 (129)
T 2y69_F 108 GEAQRCPSCGTHY 120 (129)
T ss_dssp SSCEECTTTCCEE
T ss_pred CCceeCCCCCeEE
Confidence 3468999999988
No 227
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.43 E-value=21 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=15.1
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2elz_A 11 KPYKCEDCGKGYNRRLNLDM 30 (46)
T ss_dssp SSCBCSSSCCBCSSHHHHHH
T ss_pred CCeeCcccCchhCCHHHHHH
Confidence 45789999999977665543
No 228
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.26 E-value=28 Score=27.38 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=17.0
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
.+-+.|+.|||.|..-++..+
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~ 46 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQER 46 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHH
T ss_pred CCCEECCCCCCCcCcHHHHhh
Confidence 456889999999988777655
No 229
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.10 E-value=85 Score=23.81 Aligned_cols=9 Identities=33% Similarity=1.036 Sum_probs=6.3
Q ss_pred cccCCCCcC
Q 009948 452 RCTKCNGRF 460 (522)
Q Consensus 452 RC~~CN~~l 460 (522)
.|..|+..+
T Consensus 10 ~C~~C~~~f 18 (96)
T 2dmd_A 10 KCEVCGKCF 18 (96)
T ss_dssp CBTTTTBCC
T ss_pred ECCCCCCcc
Confidence 577777765
No 230
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=23.83 E-value=27 Score=33.93 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=10.2
Q ss_pred CCceeecCCCCe
Q 009948 488 NLQFWQCMDCNQ 499 (522)
Q Consensus 488 ~~~F~~C~~Cgk 499 (522)
....|+||.|.+
T Consensus 252 gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 252 GRGTHFCPTCQG 263 (266)
T ss_dssp SCEEEECTTTTT
T ss_pred CCceEECCCCCC
Confidence 467899999986
No 231
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.68 E-value=36 Score=22.16 Aligned_cols=21 Identities=10% Similarity=0.376 Sum_probs=16.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2en6_A 10 EKPYGCNECGKTFSQKSILSA 30 (46)
T ss_dssp SCCEEETTTTEEESSHHHHHH
T ss_pred CcCeECCCCCcccCchHHHHH
Confidence 345789999999987776654
No 232
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=23.67 E-value=38 Score=24.16 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=14.2
Q ss_pred CceeecCCCCeeEeccchh
Q 009948 489 LQFWQCMDCNQLYWEGTQY 507 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~ 507 (522)
..-|.|+.||+.|-.-++.
T Consensus 12 ~k~~~C~~C~k~F~~~~~l 30 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEAN 30 (62)
T ss_dssp SSEEECSSSCCEEEHHHHH
T ss_pred CCCccCCCCCchhccHHHh
Confidence 4568899999999654443
No 233
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.65 E-value=21 Score=23.45 Aligned_cols=21 Identities=10% Similarity=0.363 Sum_probs=16.2
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eoq_A 10 EKPFKCDICGKSFCGRSRLNR 30 (46)
T ss_dssp SCSCCCSSSCCCCSSHHHHHH
T ss_pred CCCcCCCcCCchhCCHHHHHH
Confidence 345789999999987766654
No 234
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=23.63 E-value=26 Score=37.14 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 400 (522)
-++|++|+.||+|.++.+.+.-+..+...|.++|
T Consensus 40 ~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 73 (524)
T 2x1l_A 40 AIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEG 73 (524)
T ss_dssp HHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcC
Confidence 4699999999999988654322345777777665
No 235
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=23.59 E-value=61 Score=28.54 Aligned_cols=48 Identities=10% Similarity=-0.056 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecChhHHHhhhhc
Q 009948 366 EGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLI 417 (522)
Q Consensus 366 g~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~RiiLTrd~~l~~~~~~~ 417 (522)
+.+.+.||..|.-- ..+..|--|...|...|-+|+|+|++|.+-....
T Consensus 95 ~~i~~~l~~~G~~~----~i~~~D~lIAAtA~~~gl~LvT~d~dF~~i~~~~ 142 (156)
T 3h87_A 95 LEVQTLLADRGHHR----GPSIPDLLIAATAELSGLTVLHVDKDFDAIAALT 142 (156)
T ss_dssp HHHHHHHHHTTCTT----SSCHHHHHHHHHHHHHTCEEEESCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC----CCChhHHHHHHHHHHCCCEEEEeChhhhhhhhcC
Confidence 46667788888531 0123466788999999999999999986654433
No 236
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=23.57 E-value=29 Score=33.76 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.8
Q ss_pred CCceeecCCCCe
Q 009948 488 NLQFWQCMDCNQ 499 (522)
Q Consensus 488 ~~~F~~C~~Cgk 499 (522)
....|+||.|.+
T Consensus 262 gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 262 GRGTHYCPRCQR 273 (273)
T ss_dssp TEEEEECTTTCC
T ss_pred CCCeEECCCCCC
Confidence 467899999975
No 237
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.49 E-value=32 Score=22.44 Aligned_cols=21 Identities=10% Similarity=0.391 Sum_probs=16.1
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+.+.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2emp_A 10 VKPYMCNECGKAFSVYSSLTT 30 (46)
T ss_dssp CCSEECSSSCCEESCHHHHHH
T ss_pred CcCeECCCCCchhCCHHHHHH
Confidence 345889999999987666654
No 238
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.44 E-value=23 Score=23.21 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=15.4
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-|.|+.|||.|-.-+++.+
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eop_A 11 KPHECRECGKSFSFNSQLIV 30 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHHH
T ss_pred CCeeCCCCCchhCCHHHHHH
Confidence 45789999999977666544
No 239
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.42 E-value=23 Score=23.32 Aligned_cols=21 Identities=10% Similarity=0.539 Sum_probs=16.0
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2en9_A 10 KKLFKCNECKKTFTQSSSLTV 30 (46)
T ss_dssp SCCCBCTTTCCBCSSHHHHHH
T ss_pred CCCEECCccCcccCCHHHHHH
Confidence 345789999999987666554
No 240
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.32 E-value=40 Score=28.19 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=23.2
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeEeccc
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEGT 505 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~Gs 505 (522)
.=|+.||..|.++. + . ......|.|+.||-++-..+
T Consensus 5 ~FCp~Cgn~L~~~~-~---------------~---~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 5 QYCIECNNMLYPRE-D---------------K---VDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCSSSCCCCEECC-C---------------T---TTCCCCEECSSSCCEECCSC
T ss_pred eeCcCCCCEeeEcc-c---------------C---CCCeeEEECCCCCCeEEcCC
Confidence 44999999885321 0 0 01234788999998876543
No 241
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=23.31 E-value=24 Score=20.77 Aligned_cols=18 Identities=11% Similarity=0.510 Sum_probs=13.7
Q ss_pred eecC--CCCeeEeccchhhH
Q 009948 492 WQCM--DCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~--~CgkvyW~GsH~~~ 509 (522)
+.|+ .||+.|-.-++..+
T Consensus 3 ~~C~~~~C~k~f~~~~~L~~ 22 (31)
T 1sp2_A 3 FMCTWSYCGKRFTRSDELQR 22 (31)
T ss_dssp CBCCSTTCCCBCSSHHHHHH
T ss_pred cCCcCCCCCcccCCHhHHHH
Confidence 5697 99999977666544
No 242
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.30 E-value=33 Score=22.41 Aligned_cols=20 Identities=15% Similarity=0.581 Sum_probs=15.6
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+.+.+
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yso_A 11 KSHQCRECGEIFFQYVSLIE 30 (46)
T ss_dssp CCEECTTTCCEESSHHHHHH
T ss_pred CCEEccccChhhCCHHHHHH
Confidence 45789999999987666554
No 243
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.02 E-value=25 Score=23.00 Aligned_cols=21 Identities=14% Similarity=0.589 Sum_probs=15.9
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2eoe_A 10 EKPYKCNECGKVFTQNSHLAN 30 (46)
T ss_dssp CCSSEETTTTEECSSHHHHHH
T ss_pred CCCeECCCcChhhCCHHHHHH
Confidence 345789999999987666554
No 244
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.96 E-value=51 Score=24.91 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=8.8
Q ss_pred CCcccCCCCcC
Q 009948 450 MSRCTKCNGRF 460 (522)
Q Consensus 450 ~sRC~~CN~~l 460 (522)
-.||..|+..+
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wfh_A 15 PNRCTVCRKRV 25 (64)
T ss_dssp CCCCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 47999999854
No 245
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.58 E-value=22 Score=23.28 Aligned_cols=21 Identities=10% Similarity=0.464 Sum_probs=15.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eq1_A 10 EKPYKCNECGKAFRAHSNLTT 30 (46)
T ss_dssp SCCCCCTTTTCCCSSHHHHHH
T ss_pred CCCeECCcCChhhCCHHHHHH
Confidence 345789999999976655543
No 246
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.53 E-value=24 Score=23.09 Aligned_cols=20 Identities=15% Similarity=0.609 Sum_probs=15.4
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2epz_A 11 KPFDCIDCGKAFSDHIGLNQ 30 (46)
T ss_dssp CSBCCTTTCCCBSSHHHHHH
T ss_pred CCeECCCCCceeCCHHHHHH
Confidence 45789999999987666544
No 247
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.45 E-value=24 Score=23.02 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=15.3
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+.+.+
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eov_A 11 KPYKCSDCGKSFTWKSRLRI 30 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHH
T ss_pred CCccCCccChhhCCHHHHHH
Confidence 45789999999977665544
No 248
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=22.42 E-value=38 Score=29.57 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcccccccCcCCCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCee
Q 009948 430 NQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQL 500 (522)
Q Consensus 430 ~eQl~~v~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkv 500 (522)
..++..+++.|= .-|-.|+.|+.+-.. +. .+...-|-.|..||..
T Consensus 88 ~~~i~~~L~~yI------~~yVlC~~C~sPdT~--l~------------------k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 88 HFLINERIEDYV------NKFVICHECNRPDTR--II------------------REGRISLLKCEACGAK 132 (138)
T ss_dssp SSHHHHHHHHHH------THHHHHTCCSSCSSC--CE------------------EETTTTEEECSTTSCC
T ss_pred HHHHHHHHHHHH------hhEEECCCCCCcCcE--EE------------------EcCCeEEEEccCCCCC
Confidence 357788888771 124569999996431 11 1223468899999853
No 249
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.19 E-value=25 Score=23.06 Aligned_cols=21 Identities=10% Similarity=0.545 Sum_probs=15.5
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.|||.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2ytn_A 10 KKPYKCNECGKVFTQNSHLAR 30 (46)
T ss_dssp CSSCBCTTTCCBCSSHHHHHH
T ss_pred CcCeECCCCCCeeCCHHHHHH
Confidence 345789999999977665543
No 250
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.95 E-value=32 Score=20.27 Aligned_cols=18 Identities=11% Similarity=0.536 Sum_probs=14.0
Q ss_pred eecC--CCCeeEeccchhhH
Q 009948 492 WQCM--DCNQLYWEGTQYHN 509 (522)
Q Consensus 492 ~~C~--~CgkvyW~GsH~~~ 509 (522)
|.|+ .||+.|=.-+++.+
T Consensus 4 ~~C~~~~C~k~f~~~~~L~~ 23 (32)
T 1zfd_A 4 YSCDHPGCDKAFVRNHDLIR 23 (32)
T ss_dssp BCCCCTTCCCCBSSSHHHHH
T ss_pred CcCcCCCCCCccCCHHHHHH
Confidence 6799 99999977666544
No 251
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=21.88 E-value=25 Score=36.90 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 400 (522)
-++|++|+.||+|.++.+.+.-+..+...|.++|
T Consensus 31 ~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 64 (500)
T 2d5b_A 31 FLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64 (500)
T ss_dssp HHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHT
T ss_pred HHHHHHHcCCCceeeecccCCchHHHHHHHHHcC
Confidence 4699999999999987653222345777777665
No 252
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=21.79 E-value=34 Score=33.25 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=10.0
Q ss_pred CCceeecCCCCe
Q 009948 488 NLQFWQCMDCNQ 499 (522)
Q Consensus 488 ~~~F~~C~~Cgk 499 (522)
....|+||.|.+
T Consensus 259 gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 259 GRGTHFCPVCQQ 270 (271)
T ss_dssp TEEEEECTTTSC
T ss_pred CCceEECCCCCC
Confidence 467889999986
No 253
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=21.72 E-value=36 Score=23.21 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=15.4
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.||+.|-.-+.+.+
T Consensus 31 ~~~~C~~C~~~f~~~~~l~~ 50 (57)
T 3uk3_C 31 KPYKCEFCEYAAAQKTSLRY 50 (57)
T ss_dssp CCEECSSSSCEESSHHHHHH
T ss_pred CCcCCCCCcchhCCHHHHHH
Confidence 45889999999987665543
No 254
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.61 E-value=22 Score=23.36 Aligned_cols=21 Identities=14% Similarity=0.464 Sum_probs=16.3
Q ss_pred ceeecCCCCeeEeccchhhHH
Q 009948 490 QFWQCMDCNQLYWEGTQYHNA 510 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~~ 510 (522)
.-|.|+.|||.|-.-+++.+=
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ytt_A 11 KPYQCSECGKSFSGSYRLTQH 31 (46)
T ss_dssp CTTCCSSSCCCCSSHHHHHHH
T ss_pred CCeeCCCCCcccCCHHHHHHH
Confidence 447899999999887776543
No 255
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=21.59 E-value=41 Score=28.53 Aligned_cols=35 Identities=20% Similarity=0.608 Sum_probs=22.5
Q ss_pred CcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeEecc
Q 009948 451 SRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEG 504 (522)
Q Consensus 451 sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvyW~G 504 (522)
.=|+.||..|.+.. + + ......|.|+.||-.+=..
T Consensus 5 ~FCp~CgnlL~~~~----~---------~------~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 5 RFCRDCNNMLYPRE----D---------K------ENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CBCSSSCCBCEEEE----E---------T------TTTEEEEECSSSSCEEECS
T ss_pred CcccccCccCcccc----c---------C------cCCCCEEECCcCCCeeecC
Confidence 34999999885310 0 0 1124588999999887543
No 256
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.54 E-value=24 Score=23.21 Aligned_cols=20 Identities=15% Similarity=0.660 Sum_probs=15.2
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|+|.|-.-+++.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2eom_A 11 RGHRCSDCGKFFLQASNFIQ 30 (46)
T ss_dssp SSCCCSSSCCCCSSHHHHHH
T ss_pred CCcCCCCCCCeeCChHHHHH
Confidence 45789999999977665544
No 257
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.39 E-value=57 Score=25.36 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.6
Q ss_pred CCcccCCCCcC
Q 009948 450 MSRCTKCNGRF 460 (522)
Q Consensus 450 ~sRC~~CN~~l 460 (522)
-.||..|+..+
T Consensus 25 ~~RC~~C~kkv 35 (74)
T 1wfp_A 25 ATRCLSCNKKV 35 (74)
T ss_dssp CCBCSSSCCBC
T ss_pred CccchhhcCcc
Confidence 37999999854
No 258
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.37 E-value=34 Score=33.14 Aligned_cols=12 Identities=17% Similarity=0.623 Sum_probs=9.8
Q ss_pred CCceeecCCCCe
Q 009948 488 NLQFWQCMDCNQ 499 (522)
Q Consensus 488 ~~~F~~C~~Cgk 499 (522)
....|+||.|.+
T Consensus 257 gR~t~~CP~CQ~ 268 (268)
T 1k82_A 257 QRATFYCRQCQK 268 (268)
T ss_dssp TEEEEECTTTCC
T ss_pred CCceEECCCCCC
Confidence 467889999975
No 259
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.37 E-value=23 Score=23.29 Aligned_cols=20 Identities=15% Similarity=0.663 Sum_probs=15.8
Q ss_pred ceeecCCCCeeEeccchhhH
Q 009948 490 QFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 490 ~F~~C~~CgkvyW~GsH~~~ 509 (522)
.-+.|+.|||.|-.-+++.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ytm_A 11 KPYKCMECGKAFGDNSSCTQ 30 (46)
T ss_dssp CSSSBTTTTBCCSSHHHHHH
T ss_pred CCcCCCCCCchhCCHHHHHH
Confidence 45789999999987776654
No 260
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.37 E-value=27 Score=22.64 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=15.8
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|=.-+++.+
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~ 28 (43)
T 2yrm_A 8 NGAFFCNECDCRFSEEASLKR 28 (43)
T ss_dssp SCCBCCSSSCCCBSSHHHHHH
T ss_pred CCCEECCCCCCeeCChHHHHH
Confidence 345789999999977666554
No 261
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.33 E-value=29 Score=22.59 Aligned_cols=21 Identities=10% Similarity=0.460 Sum_probs=16.2
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eq4_A 10 EKLYNCKECGKSFSRAPCLLK 30 (46)
T ss_dssp CCCCCBTTTTBCCSCHHHHHH
T ss_pred CCCeECCCCCCccCchHHHHH
Confidence 345789999999988776654
No 262
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.25 E-value=26 Score=25.73 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=16.7
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.|++.|-.-+++.+
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~ 35 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLAS 35 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHH
T ss_pred CCCeECCCCCceeCCHHHHHH
Confidence 456889999999988776654
No 263
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.25 E-value=58 Score=25.79 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=7.9
Q ss_pred CcccCCCCcC
Q 009948 451 SRCTKCNGRF 460 (522)
Q Consensus 451 sRC~~CN~~l 460 (522)
.-|+.|..++
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 3599999976
No 264
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=21.22 E-value=38 Score=23.12 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=15.1
Q ss_pred CceeecCCCCeeEeccchhh
Q 009948 489 LQFWQCMDCNQLYWEGTQYH 508 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~ 508 (522)
..-|.|+.||+.|-.-+.+.
T Consensus 27 ~~~~~C~~C~~~f~~~~~l~ 46 (57)
T 1bbo_A 27 VRPYHCTYCNFSFKTKGNLT 46 (57)
T ss_dssp CCCEECSSSSCEESSHHHHH
T ss_pred CCCccCCCCCchhcCHHHHH
Confidence 34589999999997655544
No 265
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=21.22 E-value=37 Score=23.53 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=15.7
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+.+.+
T Consensus 28 ~~~~~C~~C~~~f~~~~~l~~ 48 (60)
T 2adr_A 28 EKPYPCGLCNRAFTRRDLLIR 48 (60)
T ss_dssp SCSEECTTTCCEESSHHHHHH
T ss_pred CCCccCCCCCCccCCHHHHHH
Confidence 345889999999977655543
No 266
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=21.12 E-value=40 Score=24.24 Aligned_cols=13 Identities=31% Similarity=1.060 Sum_probs=10.8
Q ss_pred CCceeecCCCCee
Q 009948 488 NLQFWQCMDCNQL 500 (522)
Q Consensus 488 ~~~F~~C~~Cgkv 500 (522)
..+.|+|+.|++.
T Consensus 8 ~eD~WkC~~C~k~ 20 (53)
T 2cr8_A 8 SEDEWQCTECKKF 20 (53)
T ss_dssp CSCCEECSSSCCE
T ss_pred Ccceeeccccccc
Confidence 4679999999974
No 267
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=20.63 E-value=38 Score=23.99 Aligned_cols=21 Identities=14% Similarity=0.496 Sum_probs=15.3
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-|.|+.||+.|-.-+.+.+
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~ 28 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFCR 28 (66)
T ss_dssp TTEEECTTTCCEESSHHHHHH
T ss_pred CcceECCCCcchhCCHHHHHH
Confidence 346789999999976655544
No 268
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=20.61 E-value=26 Score=22.93 Aligned_cols=21 Identities=14% Similarity=0.622 Sum_probs=15.4
Q ss_pred CceeecCCCCeeEeccchhhH
Q 009948 489 LQFWQCMDCNQLYWEGTQYHN 509 (522)
Q Consensus 489 ~~F~~C~~CgkvyW~GsH~~~ 509 (522)
..-+.|+.||+.|-.-+++.+
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2em0_A 10 EKTWKCRECDMCFSQASSLRL 30 (46)
T ss_dssp CCCCCCSSSCCCCSSHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHH
Confidence 345789999999977665543
No 269
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.55 E-value=35 Score=26.49 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=12.3
Q ss_pred ceeecCCCCeeEecc
Q 009948 490 QFWQCMDCNQLYWEG 504 (522)
Q Consensus 490 ~F~~C~~CgkvyW~G 504 (522)
-.|.|..|++.|=.|
T Consensus 44 GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 44 SIWVCGHCGYKIAGG 58 (73)
T ss_pred EEEECCCCCcEEECC
Confidence 479999999998554
No 270
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=20.54 E-value=70 Score=37.09 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=40.3
Q ss_pred cHHHHHHHHcCC-cccccccc--CCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009948 163 SLANICKELLDI-SLSKELQC--SDWSNRPLT---EEQKNYAAIDAHCLIEIFNIFQVKVAQK 219 (522)
Q Consensus 163 gL~~L~~~~Lg~-~L~K~~q~--sdW~~RPL~---~~qi~YAA~DA~~ll~L~~~L~~~L~~~ 219 (522)
||.+++.-+.|. +++|+..- ..-+...+. .+-+.|.|.||.++.++|..+-+...+.
T Consensus 288 SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~er 350 (1172)
T 3ikm_A 288 SLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLER 350 (1172)
T ss_dssp HHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 799999999997 88886432 122222222 3458999999999999999999887665
No 271
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.36 E-value=33 Score=24.76 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=7.8
Q ss_pred eeecCCCCee
Q 009948 491 FWQCMDCNQL 500 (522)
Q Consensus 491 F~~C~~Cgkv 500 (522)
-|.|..||-.
T Consensus 28 aw~CrKCG~~ 37 (51)
T 3j21_g 28 AKKCRKCGYK 37 (51)
T ss_dssp CSSCSSSSSC
T ss_pred ceecCCCCCc
Confidence 5789999854
No 272
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=20.17 E-value=51 Score=29.83 Aligned_cols=49 Identities=18% Similarity=0.399 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHcccccccCcCCCcccCCCCcCccCCCChHHHHHhhcccccCCccccccCCceeecCCCCeeE
Q 009948 429 KNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLY 501 (522)
Q Consensus 429 ~~eQl~~v~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~Cgkvy 501 (522)
...+|..+|+.|= .-|-.|..|+.+-.. +.++ + +...-|-.|..||...
T Consensus 81 ~~~~i~~~L~~yI------~~YVlC~~C~sPdT~--L~k~------------~----~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 81 EANKLQDMLDGFI------KKFVLCPECENPETD--LHVN------------P----KKQTIGNSCKACGYRG 129 (170)
T ss_dssp CHHHHHHHHHHHH------HHHHSCTTTSSSCEE--EEEE------------T----TTTEEEEEETTTCCCC
T ss_pred CHHHHHHHHHHHH------HHeEECCCCCCCccE--EEEe------------c----CCCEEEEEccccCCcc
Confidence 3567888888871 124569999996421 1100 0 1234578899999754
No 273
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=20.15 E-value=32 Score=36.15 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 400 (522)
-++|++|+.||+|.++.+.+.-+..+...|.++|
T Consensus 33 ~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 66 (497)
T 2csx_A 33 TIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELG 66 (497)
T ss_dssp HHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSS
T ss_pred HHHHHHHhcCCceeeecccCCCcHHHHHHHHHcC
Confidence 4699999999999988653222345777777765
No 274
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=20.12 E-value=31 Score=36.93 Aligned_cols=34 Identities=6% Similarity=-0.013 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCceecCCCCCCChHHHHHhhhcCC
Q 009948 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (522)
Q Consensus 367 ~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~E~ 400 (522)
-|+|+||+.||+|.++.+.+.-+..+...|.++|
T Consensus 46 ~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 79 (560)
T 3h99_A 46 VWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLG 79 (560)
T ss_dssp HHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhC
Confidence 4799999999999987653222345777776655
Done!