Query 009950
Match_columns 521
No_of_seqs 224 out of 1482
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 19:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 6E-202 1E-206 1574.9 42.8 489 32-521 10-499 (582)
2 PLN03129 NADP-dependent malic 100.0 6E-194 1E-198 1546.6 45.4 473 49-521 39-511 (581)
3 PRK13529 malate dehydrogenase; 100.0 7E-194 1E-198 1542.1 44.0 472 47-521 12-492 (563)
4 PTZ00317 NADP-dependent malic 100.0 1E-193 2E-198 1539.5 44.2 474 46-521 13-491 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 1E-110 3E-115 870.6 26.1 357 85-521 1-363 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 3E-104 7E-109 877.1 27.2 314 132-521 34-350 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 3E-103 6E-108 873.2 26.8 316 128-521 35-354 (763)
8 PRK07232 bifunctional malic en 100.0 2E-102 5E-107 863.0 27.9 313 132-521 30-346 (752)
9 PF03949 Malic_M: Malic enzyme 100.0 1.2E-85 2.6E-90 652.4 16.9 213 307-521 1-216 (255)
10 cd05312 NAD_bind_1_malic_enz N 100.0 2.2E-83 4.8E-88 643.2 21.9 213 307-521 1-215 (279)
11 cd00762 NAD_bind_malic_enz NAD 100.0 2.7E-83 5.9E-88 635.1 21.5 213 307-521 1-216 (254)
12 PF00390 malic: Malic enzyme, 100.0 9.5E-84 2.1E-88 610.6 9.1 182 116-297 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 2E-49 4.4E-54 386.5 17.7 186 307-521 1-189 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 1.9E-08 4.1E-13 84.4 11.4 86 309-446 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.8 0.00076 1.7E-08 72.9 16.6 160 252-449 105-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.4 0.00054 1.2E-08 73.2 9.5 121 308-449 158-280 (417)
17 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0016 3.4E-08 64.3 11.9 133 310-465 2-143 (217)
18 PLN02477 glutamate dehydrogena 97.4 0.0079 1.7E-07 64.9 17.6 186 253-461 112-324 (410)
19 PRK09414 glutamate dehydrogena 97.4 0.0083 1.8E-07 65.4 17.3 189 253-461 138-357 (445)
20 cd05213 NAD_bind_Glutamyl_tRNA 97.2 0.0016 3.4E-08 67.0 9.9 136 287-449 139-276 (311)
21 PRK00045 hemA glutamyl-tRNA re 97.2 0.0014 3E-08 70.2 9.1 120 309-449 161-283 (423)
22 PRK14030 glutamate dehydrogena 97.1 0.025 5.5E-07 61.7 18.2 189 253-461 134-357 (445)
23 cd00401 AdoHcyase S-adenosyl-L 97.1 0.0073 1.6E-07 65.2 14.0 129 299-461 163-302 (413)
24 TIGR02853 spore_dpaA dipicolin 97.1 0.0045 9.8E-08 63.4 11.1 138 308-474 128-265 (287)
25 PF01488 Shikimate_DH: Shikima 97.0 0.00051 1.1E-08 62.3 3.5 102 327-450 8-113 (135)
26 PRK14031 glutamate dehydrogena 97.0 0.018 3.9E-07 62.8 15.9 181 253-449 134-347 (444)
27 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.005 1.1E-07 58.7 10.0 89 317-449 30-119 (168)
28 PLN02494 adenosylhomocysteinas 97.0 0.0082 1.8E-07 65.9 12.8 130 299-462 215-355 (477)
29 TIGR00936 ahcY adenosylhomocys 97.0 0.01 2.2E-07 64.0 13.3 127 299-459 156-293 (406)
30 COG0373 HemA Glutamyl-tRNA red 96.8 0.004 8.7E-08 67.2 8.7 134 286-450 138-278 (414)
31 PTZ00079 NADP-specific glutama 96.8 0.092 2E-06 57.6 19.0 188 253-461 143-366 (454)
32 PLN00203 glutamyl-tRNA reducta 96.7 0.0054 1.2E-07 67.9 8.8 121 309-449 243-372 (519)
33 PRK08306 dipicolinate synthase 96.6 0.015 3.2E-07 59.8 10.9 129 312-474 133-266 (296)
34 cd01076 NAD_bind_1_Glu_DH NAD( 96.6 0.019 4.1E-07 57.1 10.9 132 308-461 8-149 (227)
35 cd05313 NAD_bind_2_Glu_DH NAD( 96.6 0.04 8.6E-07 56.1 13.3 133 309-461 16-167 (254)
36 cd01075 NAD_bind_Leu_Phe_Val_D 96.5 0.028 6E-07 54.6 11.2 127 309-466 4-133 (200)
37 PRK14982 acyl-ACP reductase; P 96.5 0.017 3.6E-07 61.0 10.2 114 310-450 134-250 (340)
38 PTZ00075 Adenosylhomocysteinas 96.4 0.07 1.5E-06 58.8 14.6 123 299-449 215-344 (476)
39 PRK13940 glutamyl-tRNA reducta 96.2 0.014 3.1E-07 62.9 8.3 131 288-449 143-276 (414)
40 PRK14175 bifunctional 5,10-met 96.2 0.015 3.3E-07 60.0 8.2 96 309-448 136-232 (286)
41 PRK14192 bifunctional 5,10-met 96.2 0.026 5.6E-07 58.1 9.7 109 309-461 137-250 (283)
42 PF00670 AdoHcyase_NAD: S-aden 96.1 0.071 1.5E-06 51.1 11.5 120 308-461 3-123 (162)
43 PLN00106 malate dehydrogenase 96.0 0.035 7.5E-07 58.1 9.7 142 316-473 4-165 (323)
44 PRK12549 shikimate 5-dehydroge 96.0 0.013 2.7E-07 59.9 6.2 90 316-422 112-203 (284)
45 cd01078 NAD_bind_H4MPT_DH NADP 95.9 0.042 9E-07 52.2 8.7 114 310-449 7-132 (194)
46 cd01065 NAD_bind_Shikimate_DH 95.8 0.029 6.3E-07 50.5 7.2 113 316-449 4-120 (155)
47 TIGR00518 alaDH alanine dehydr 95.7 0.035 7.6E-07 58.8 8.3 95 329-447 165-268 (370)
48 cd00650 LDH_MDH_like NAD-depen 95.6 0.021 4.5E-07 57.1 5.8 131 334-478 1-149 (263)
49 TIGR01809 Shik-DH-AROM shikima 95.5 0.032 7E-07 56.8 6.7 104 300-431 100-210 (282)
50 cd05291 HicDH_like L-2-hydroxy 95.4 0.043 9.2E-07 56.3 7.3 125 333-474 2-144 (306)
51 PRK00676 hemA glutamyl-tRNA re 95.3 0.071 1.5E-06 56.4 8.8 123 287-451 136-266 (338)
52 PF00208 ELFV_dehydrog: Glutam 95.0 0.067 1.5E-06 53.9 7.3 131 305-449 5-151 (244)
53 PF00056 Ldh_1_N: lactate/mala 95.0 0.021 4.5E-07 52.5 3.3 104 333-449 2-121 (141)
54 PRK10792 bifunctional 5,10-met 95.0 0.23 4.9E-06 51.6 11.0 108 310-461 138-251 (285)
55 PRK08293 3-hydroxybutyryl-CoA 94.9 0.052 1.1E-06 54.9 6.3 130 332-479 4-148 (287)
56 PF03807 F420_oxidored: NADP o 94.8 0.046 1E-06 45.7 4.6 94 333-448 1-96 (96)
57 cd05212 NAD_bind_m-THF_DH_Cycl 94.7 0.22 4.7E-06 46.4 9.3 90 312-444 9-98 (140)
58 PRK00066 ldh L-lactate dehydro 94.6 0.072 1.6E-06 55.3 6.5 127 332-475 7-150 (315)
59 PTZ00082 L-lactate dehydrogena 94.6 0.12 2.5E-06 54.0 8.0 127 331-475 6-156 (321)
60 PRK05086 malate dehydrogenase; 94.6 0.17 3.6E-06 52.6 9.0 105 332-449 1-121 (312)
61 PRK09424 pntA NAD(P) transhydr 94.5 0.2 4.4E-06 55.6 10.1 190 228-456 68-296 (509)
62 cd05296 GH4_P_beta_glucosidase 94.5 0.066 1.4E-06 57.9 6.2 125 332-472 1-166 (419)
63 PRK14191 bifunctional 5,10-met 94.5 0.13 2.9E-06 53.2 8.0 92 311-446 137-229 (285)
64 PTZ00117 malate dehydrogenase; 94.4 0.18 3.8E-06 52.4 8.8 128 330-475 4-150 (319)
65 PRK06223 malate dehydrogenase; 94.4 0.099 2.1E-06 53.2 6.7 127 332-476 3-148 (307)
66 TIGR02356 adenyl_thiF thiazole 94.3 0.061 1.3E-06 52.2 5.0 104 327-446 17-144 (202)
67 cd05197 GH4_glycoside_hydrolas 94.0 0.12 2.5E-06 56.1 6.6 125 332-472 1-166 (425)
68 PTZ00325 malate dehydrogenase; 93.9 0.31 6.6E-06 51.1 9.5 107 329-449 6-128 (321)
69 PRK08328 hypothetical protein; 93.5 0.041 8.8E-07 54.6 2.1 54 293-375 7-60 (231)
70 cd01079 NAD_bind_m-THF_DH NAD 93.5 0.45 9.8E-06 47.0 9.1 103 312-431 34-147 (197)
71 PRK08223 hypothetical protein; 93.2 0.16 3.5E-06 52.7 5.9 127 290-447 4-153 (287)
72 PRK12475 thiamine/molybdopteri 93.1 0.13 2.8E-06 54.0 5.2 99 327-444 20-147 (338)
73 TIGR00561 pntA NAD(P) transhyd 93.1 0.38 8.2E-06 53.6 8.9 177 227-435 66-276 (511)
74 PRK14189 bifunctional 5,10-met 93.1 0.32 6.9E-06 50.5 7.8 93 310-446 137-230 (285)
75 PRK12749 quinate/shikimate deh 93.0 0.21 4.6E-06 51.4 6.4 49 316-375 109-157 (288)
76 PRK08605 D-lactate dehydrogena 93.0 0.58 1.3E-05 48.9 9.8 110 326-467 141-255 (332)
77 PRK00257 erythronate-4-phospha 93.0 0.71 1.5E-05 49.6 10.6 118 298-447 80-208 (381)
78 PLN02928 oxidoreductase family 93.0 0.77 1.7E-05 48.4 10.7 164 309-501 121-314 (347)
79 TIGR02354 thiF_fam2 thiamine b 92.8 0.14 3.1E-06 49.9 4.6 107 327-453 17-126 (200)
80 PRK15076 alpha-galactosidase; 92.6 0.28 6E-06 53.3 6.9 129 332-476 2-174 (431)
81 PRK08762 molybdopterin biosynt 92.6 0.19 4.1E-06 53.1 5.5 103 327-445 131-257 (376)
82 PRK14178 bifunctional 5,10-met 92.6 0.33 7.2E-06 50.2 7.1 94 309-446 130-224 (279)
83 PRK14194 bifunctional 5,10-met 92.5 0.44 9.6E-06 49.8 7.9 94 311-448 139-234 (301)
84 PRK14176 bifunctional 5,10-met 92.5 0.48 1E-05 49.2 8.2 84 310-431 143-227 (287)
85 PRK05600 thiamine biosynthesis 92.5 0.28 6.2E-06 52.2 6.7 102 327-444 37-162 (370)
86 cd05297 GH4_alpha_glucosidase_ 92.4 0.27 5.8E-06 53.1 6.4 124 333-474 2-170 (423)
87 cd01337 MDH_glyoxysomal_mitoch 92.3 0.7 1.5E-05 48.3 9.1 123 333-473 2-147 (310)
88 TIGR02992 ectoine_eutC ectoine 92.3 0.62 1.3E-05 48.5 8.7 116 317-459 117-238 (326)
89 COG0334 GdhA Glutamate dehydro 92.2 3.6 7.8E-05 44.9 14.6 187 252-461 111-325 (411)
90 PRK15438 erythronate-4-phospha 92.2 1.2 2.6E-05 47.9 11.0 108 308-447 93-208 (378)
91 cd01487 E1_ThiF_like E1_ThiF_l 92.2 0.47 1E-05 45.1 7.2 32 333-375 1-32 (174)
92 cd00704 MDH Malate dehydrogena 92.2 0.59 1.3E-05 48.9 8.5 121 333-463 2-140 (323)
93 PRK14619 NAD(P)H-dependent gly 92.2 1.2 2.5E-05 45.7 10.5 33 331-375 4-36 (308)
94 PRK14027 quinate/shikimate deh 92.2 0.3 6.4E-06 50.2 6.2 49 316-375 112-160 (283)
95 PRK09260 3-hydroxybutyryl-CoA 92.2 0.31 6.8E-06 49.2 6.2 32 332-375 2-33 (288)
96 PRK06129 3-hydroxyacyl-CoA deh 92.0 0.26 5.7E-06 50.4 5.6 170 332-519 3-218 (308)
97 PRK12548 shikimate 5-dehydroge 91.9 0.36 7.8E-06 49.3 6.4 58 299-375 102-159 (289)
98 PF02826 2-Hacid_dh_C: D-isome 91.8 0.55 1.2E-05 44.4 7.1 115 322-468 27-147 (178)
99 PF01210 NAD_Gly3P_dh_N: NAD-d 91.8 0.18 3.9E-06 46.8 3.7 85 333-437 1-93 (157)
100 cd05293 LDH_1 A subgroup of L- 91.8 0.51 1.1E-05 49.1 7.4 127 332-475 4-148 (312)
101 PRK07688 thiamine/molybdopteri 91.7 0.25 5.4E-06 52.0 5.1 39 327-376 20-58 (339)
102 TIGR01763 MalateDH_bact malate 91.6 0.38 8.2E-06 49.7 6.3 125 332-474 2-145 (305)
103 TIGR01758 MDH_euk_cyt malate d 91.6 1.1 2.3E-05 47.0 9.6 134 333-477 1-155 (324)
104 PRK00258 aroE shikimate 5-dehy 91.4 0.46 9.9E-06 48.1 6.5 88 315-422 106-196 (278)
105 PRK06130 3-hydroxybutyryl-CoA 91.2 0.87 1.9E-05 46.3 8.3 32 332-375 5-36 (311)
106 PF00899 ThiF: ThiF family; I 91.0 0.4 8.6E-06 43.1 5.0 36 330-376 1-36 (135)
107 COG0111 SerA Phosphoglycerate 90.6 1.8 3.9E-05 45.5 10.2 110 300-434 90-224 (324)
108 PRK14183 bifunctional 5,10-met 90.6 0.92 2E-05 47.1 7.8 85 309-431 135-220 (281)
109 cd01336 MDH_cytoplasmic_cytoso 90.5 1.7 3.8E-05 45.4 9.9 135 332-476 3-157 (325)
110 PRK14184 bifunctional 5,10-met 90.2 0.86 1.9E-05 47.4 7.3 97 310-446 136-233 (286)
111 COG0169 AroE Shikimate 5-dehyd 90.2 0.63 1.4E-05 48.2 6.3 85 317-422 110-201 (283)
112 PRK14190 bifunctional 5,10-met 90.2 1 2.2E-05 46.7 7.8 92 310-445 137-229 (284)
113 PRK02842 light-independent pro 90.0 2.2 4.9E-05 46.0 10.5 116 262-419 248-368 (427)
114 cd01338 MDH_choloroplast_like 89.7 1.8 3.9E-05 45.3 9.2 121 332-463 3-142 (322)
115 PRK14179 bifunctional 5,10-met 89.7 1.1 2.4E-05 46.6 7.5 93 310-446 137-230 (284)
116 PRK05442 malate dehydrogenase; 89.6 1.2 2.6E-05 46.8 7.8 129 332-471 5-155 (326)
117 PF01262 AlaDh_PNT_C: Alanine 89.6 0.19 4E-06 47.2 1.7 99 328-446 17-139 (168)
118 PRK06035 3-hydroxyacyl-CoA deh 89.6 1.2 2.6E-05 45.0 7.7 32 332-375 4-35 (291)
119 PRK07574 formate dehydrogenase 89.5 3.4 7.3E-05 44.6 11.3 142 326-500 187-335 (385)
120 TIGR01772 MDH_euk_gproteo mala 89.5 2.1 4.5E-05 44.8 9.5 128 333-476 1-148 (312)
121 PRK14851 hypothetical protein; 89.5 1.3 2.9E-05 51.0 8.7 122 327-465 39-194 (679)
122 TIGR01915 npdG NADPH-dependent 89.5 1.4 3E-05 42.9 7.7 96 333-451 2-106 (219)
123 PRK14618 NAD(P)H-dependent gly 89.4 0.54 1.2E-05 48.3 5.1 95 332-449 5-107 (328)
124 PF02882 THF_DHG_CYH_C: Tetrah 89.4 1.3 2.9E-05 42.2 7.3 85 309-431 14-99 (160)
125 cd05292 LDH_2 A subgroup of L- 89.1 0.79 1.7E-05 47.3 6.1 127 333-476 2-145 (308)
126 PRK08291 ectoine utilization p 89.0 1.5 3.2E-05 45.7 8.0 115 317-458 120-240 (330)
127 PRK14174 bifunctional 5,10-met 88.7 1.3 2.8E-05 46.2 7.3 96 311-446 139-235 (295)
128 PRK14188 bifunctional 5,10-met 88.7 1.3 2.8E-05 46.2 7.3 92 311-446 138-230 (296)
129 cd05290 LDH_3 A subgroup of L- 88.7 1.2 2.6E-05 46.4 7.0 126 333-476 1-148 (307)
130 PRK14177 bifunctional 5,10-met 88.6 1.7 3.7E-05 45.2 8.0 82 312-431 140-222 (284)
131 cd05298 GH4_GlvA_pagL_like Gly 88.4 0.95 2.1E-05 49.4 6.4 128 332-475 1-170 (437)
132 PRK07634 pyrroline-5-carboxyla 88.4 0.99 2.1E-05 44.0 5.9 100 330-449 3-102 (245)
133 PRK14172 bifunctional 5,10-met 88.2 1.9 4.2E-05 44.7 8.1 90 311-444 138-228 (278)
134 PRK12550 shikimate 5-dehydroge 88.1 1.1 2.4E-05 45.8 6.3 48 316-375 108-155 (272)
135 TIGR01759 MalateDH-SF1 malate 87.8 2.7 5.9E-05 44.1 9.1 122 332-463 4-143 (323)
136 PRK08374 homoserine dehydrogen 87.8 2.8 6E-05 44.1 9.1 105 332-443 3-120 (336)
137 PLN02516 methylenetetrahydrofo 87.7 2 4.4E-05 45.0 8.0 85 309-431 145-230 (299)
138 PTZ00345 glycerol-3-phosphate 87.7 2.1 4.6E-05 45.8 8.3 24 330-353 10-33 (365)
139 PRK08644 thiamine biosynthesis 87.6 0.6 1.3E-05 45.9 3.9 38 327-375 24-61 (212)
140 PRK07531 bifunctional 3-hydrox 87.5 1.4 2.9E-05 48.6 6.9 96 332-446 5-115 (495)
141 PLN02306 hydroxypyruvate reduc 87.4 4.5 9.7E-05 43.6 10.6 175 297-502 107-324 (386)
142 PRK12921 2-dehydropantoate 2-r 87.4 2.7 5.8E-05 42.2 8.5 101 333-450 2-106 (305)
143 PRK07066 3-hydroxybutyryl-CoA 87.3 1.5 3.3E-05 46.0 6.8 97 405-508 104-208 (321)
144 cd00757 ThiF_MoeB_HesA_family 87.2 0.7 1.5E-05 45.5 4.1 38 327-375 17-54 (228)
145 PRK14171 bifunctional 5,10-met 87.1 2.3 5.1E-05 44.3 8.0 86 308-431 136-222 (288)
146 TIGR00872 gnd_rel 6-phosphoglu 87.0 2 4.4E-05 43.9 7.5 99 333-457 2-102 (298)
147 PRK13243 glyoxylate reductase; 86.9 6.1 0.00013 41.5 11.0 144 326-504 145-294 (333)
148 PRK14187 bifunctional 5,10-met 86.8 2.6 5.6E-05 44.1 8.1 91 310-444 139-230 (294)
149 cd01339 LDH-like_MDH L-lactate 86.7 1.4 3E-05 45.1 6.0 120 334-475 1-143 (300)
150 PRK14193 bifunctional 5,10-met 86.7 2.4 5.2E-05 44.1 7.8 85 311-431 138-223 (284)
151 PRK11880 pyrroline-5-carboxyla 86.7 2.3 5.1E-05 42.1 7.5 120 332-480 3-123 (267)
152 TIGR02355 moeB molybdopterin s 86.6 0.77 1.7E-05 46.0 4.1 38 327-375 20-57 (240)
153 PLN02602 lactate dehydrogenase 86.6 1.5 3.2E-05 46.7 6.3 125 332-475 38-182 (350)
154 cd01485 E1-1_like Ubiquitin ac 86.4 0.67 1.5E-05 45.0 3.4 39 327-376 15-53 (198)
155 PRK14170 bifunctional 5,10-met 86.3 2.7 5.9E-05 43.7 8.0 84 310-431 136-220 (284)
156 PRK14166 bifunctional 5,10-met 86.2 2.4 5.2E-05 44.1 7.5 95 308-446 134-229 (282)
157 PRK14106 murD UDP-N-acetylmura 85.9 2.7 5.8E-05 44.8 7.9 36 328-375 2-37 (450)
158 PRK14168 bifunctional 5,10-met 85.8 2.7 5.9E-05 44.0 7.7 98 309-446 139-237 (297)
159 PRK06141 ornithine cyclodeamin 85.7 3.6 7.7E-05 42.7 8.5 104 330-458 124-232 (314)
160 PRK06522 2-dehydropantoate 2-r 85.5 2.6 5.7E-05 42.1 7.2 101 333-450 2-104 (304)
161 PRK00094 gpsA NAD(P)H-dependen 85.5 2 4.4E-05 43.3 6.5 102 333-450 3-109 (325)
162 cd01492 Aos1_SUMO Ubiquitin ac 85.3 0.77 1.7E-05 44.6 3.2 77 327-420 17-97 (197)
163 PRK15317 alkyl hydroperoxide r 85.3 1.3 2.7E-05 48.7 5.2 85 279-375 148-243 (517)
164 COG0686 Ald Alanine dehydrogen 85.1 1.2 2.5E-05 47.4 4.6 106 329-458 166-290 (371)
165 TIGR03140 AhpF alkyl hydropero 85.0 1.3 2.9E-05 48.5 5.3 86 264-352 137-233 (515)
166 PRK12480 D-lactate dehydrogena 85.0 6.4 0.00014 41.3 10.1 111 326-470 141-256 (330)
167 KOG0029 Amine oxidase [Seconda 85.0 0.49 1.1E-05 52.5 1.9 37 329-368 13-49 (501)
168 PRK15116 sulfur acceptor prote 84.8 2.6 5.5E-05 43.4 6.8 105 327-450 26-134 (268)
169 PRK05690 molybdopterin biosynt 84.7 1.2 2.6E-05 44.7 4.4 38 327-375 28-65 (245)
170 PF02056 Glyco_hydro_4: Family 84.7 1.4 2.9E-05 43.1 4.6 109 333-455 1-151 (183)
171 PRK01710 murD UDP-N-acetylmura 84.6 5 0.00011 43.4 9.3 111 329-473 12-125 (458)
172 PRK15469 ghrA bifunctional gly 84.5 9.4 0.0002 39.8 11.0 140 327-501 132-278 (312)
173 TIGR01771 L-LDH-NAD L-lactate 84.5 1.6 3.5E-05 45.2 5.3 125 336-475 1-141 (299)
174 PLN03139 formate dehydrogenase 84.1 8.5 0.00018 41.6 10.7 145 326-502 194-344 (386)
175 TIGR01408 Ube1 ubiquitin-activ 83.8 0.49 1.1E-05 56.6 1.4 43 327-375 415-457 (1008)
176 cd05294 LDH-like_MDH_nadp A la 83.7 5.5 0.00012 41.3 8.8 120 333-473 2-147 (309)
177 PRK06436 glycerate dehydrogena 83.4 14 0.00029 38.6 11.5 92 326-449 117-212 (303)
178 COG0345 ProC Pyrroline-5-carbo 83.3 5.4 0.00012 41.2 8.5 35 332-375 2-37 (266)
179 TIGR00507 aroE shikimate 5-deh 83.3 2.6 5.7E-05 42.4 6.2 48 316-375 102-149 (270)
180 PRK08410 2-hydroxyacid dehydro 83.2 11 0.00023 39.3 10.7 106 327-468 141-252 (311)
181 PRK06487 glycerate dehydrogena 83.2 8.6 0.00019 40.1 10.1 136 327-501 144-287 (317)
182 cd00300 LDH_like L-lactate deh 82.9 2.6 5.6E-05 43.4 6.0 124 334-474 1-142 (300)
183 cd01483 E1_enzyme_family Super 82.9 1.6 3.5E-05 39.4 4.1 33 333-376 1-33 (143)
184 PF07992 Pyr_redox_2: Pyridine 82.8 1.8 3.9E-05 39.9 4.4 32 333-376 1-32 (201)
185 cd00755 YgdL_like Family of ac 82.8 1.4 3E-05 44.2 3.9 105 327-446 7-135 (231)
186 PRK14620 NAD(P)H-dependent gly 82.5 3.1 6.8E-05 42.7 6.4 31 333-375 2-32 (326)
187 PRK14180 bifunctional 5,10-met 82.5 5.1 0.00011 41.7 8.0 85 309-431 136-221 (282)
188 PRK09310 aroDE bifunctional 3- 82.4 2.6 5.7E-05 46.4 6.2 48 316-375 317-364 (477)
189 PRK14185 bifunctional 5,10-met 82.3 5.2 0.00011 41.9 7.9 87 311-431 137-224 (293)
190 PRK14182 bifunctional 5,10-met 82.2 5.7 0.00012 41.4 8.2 83 311-431 137-220 (282)
191 KOG0685 Flavin-containing amin 82.2 0.63 1.4E-05 51.5 1.3 26 327-352 17-42 (498)
192 PRK05597 molybdopterin biosynt 82.0 1.4 3.1E-05 46.5 3.9 104 327-446 24-151 (355)
193 PRK09599 6-phosphogluconate de 81.8 6.8 0.00015 40.0 8.6 93 333-449 2-97 (301)
194 TIGR01381 E1_like_apg7 E1-like 81.6 1.4 3.1E-05 50.5 3.9 40 327-377 334-373 (664)
195 PRK14173 bifunctional 5,10-met 81.6 5.7 0.00012 41.5 8.0 83 311-431 135-218 (287)
196 PRK14169 bifunctional 5,10-met 81.5 6.2 0.00014 41.1 8.2 85 309-431 134-219 (282)
197 PRK14181 bifunctional 5,10-met 81.2 5.7 0.00012 41.5 7.8 97 309-445 131-228 (287)
198 PRK07680 late competence prote 81.0 3.3 7.1E-05 41.6 5.9 98 333-450 2-100 (273)
199 PRK12439 NAD(P)H-dependent gly 80.7 2.4 5.3E-05 44.3 5.0 102 332-449 8-114 (341)
200 PRK14167 bifunctional 5,10-met 80.7 6.6 0.00014 41.2 8.1 96 311-446 137-233 (297)
201 PRK09880 L-idonate 5-dehydroge 80.3 17 0.00037 37.2 10.9 119 319-460 159-280 (343)
202 PRK13581 D-3-phosphoglycerate 80.2 14 0.0003 41.2 10.9 173 298-503 86-283 (526)
203 PF01113 DapB_N: Dihydrodipico 80.1 4.1 8.8E-05 36.6 5.6 96 332-444 1-97 (124)
204 TIGR02371 ala_DH_arch alanine 79.9 11 0.00024 39.4 9.5 104 330-458 127-235 (325)
205 PRK08229 2-dehydropantoate 2-r 79.8 4.1 8.8E-05 41.8 6.2 103 332-451 3-112 (341)
206 PLN02616 tetrahydrofolate dehy 79.7 6.7 0.00015 42.3 7.9 83 311-431 211-294 (364)
207 TIGR02279 PaaC-3OHAcCoADH 3-hy 79.5 11 0.00023 42.1 9.7 35 485-519 185-219 (503)
208 PRK06153 hypothetical protein; 79.3 2.3 5E-05 46.2 4.3 99 255-375 110-209 (393)
209 PRK08268 3-hydroxy-acyl-CoA de 79.2 4.9 0.00011 44.7 7.0 101 410-519 112-221 (507)
210 PLN00112 malate dehydrogenase 79.2 7 0.00015 43.1 8.1 135 332-476 101-255 (444)
211 PRK07679 pyrroline-5-carboxyla 79.1 8.9 0.00019 38.7 8.3 36 331-374 3-38 (279)
212 PRK07530 3-hydroxybutyryl-CoA 79.0 13 0.00027 37.7 9.4 32 332-375 5-36 (292)
213 PRK14186 bifunctional 5,10-met 79.0 8.2 0.00018 40.5 8.1 91 311-445 138-229 (297)
214 PRK07878 molybdopterin biosynt 78.9 1.8 3.9E-05 46.4 3.4 103 327-445 38-164 (392)
215 PRK06932 glycerate dehydrogena 78.9 15 0.00032 38.4 10.0 139 327-502 143-290 (314)
216 TIGR03366 HpnZ_proposed putati 78.8 17 0.00036 36.2 10.0 47 316-374 107-153 (280)
217 PLN02527 aspartate carbamoyltr 78.3 59 0.0013 34.1 14.2 137 262-421 86-228 (306)
218 TIGR01327 PGDH D-3-phosphoglyc 78.2 16 0.00034 40.9 10.5 174 298-503 84-282 (525)
219 PRK15409 bifunctional glyoxyla 78.0 19 0.00041 37.8 10.5 142 326-502 140-289 (323)
220 PF13738 Pyr_redox_3: Pyridine 77.9 2.6 5.6E-05 39.2 3.8 30 335-375 1-30 (203)
221 COG0039 Mdh Malate/lactate deh 77.9 6.1 0.00013 41.7 6.8 108 332-462 1-126 (313)
222 PLN02819 lysine-ketoglutarate 77.8 11 0.00025 45.6 9.8 116 315-435 178-326 (1042)
223 TIGR03376 glycerol3P_DH glycer 77.8 4.6 0.0001 42.8 6.0 20 333-352 1-20 (342)
224 PRK07411 hypothetical protein; 77.7 2.3 5E-05 45.6 3.8 102 327-444 34-159 (390)
225 PLN02897 tetrahydrofolate dehy 77.5 8.3 0.00018 41.3 7.7 84 310-431 193-277 (345)
226 PRK07231 fabG 3-ketoacyl-(acyl 77.3 5.4 0.00012 38.0 5.8 36 328-375 2-38 (251)
227 PF01494 FAD_binding_3: FAD bi 77.3 3.1 6.8E-05 41.1 4.4 35 332-378 2-36 (356)
228 PRK07340 ornithine cyclodeamin 77.2 17 0.00037 37.6 9.9 105 329-459 123-231 (304)
229 PRK12490 6-phosphogluconate de 76.6 12 0.00025 38.4 8.3 93 333-449 2-97 (299)
230 cd01491 Ube1_repeat1 Ubiquitin 76.3 2.5 5.3E-05 43.9 3.4 38 327-375 15-52 (286)
231 PF00070 Pyr_redox: Pyridine n 76.1 5.3 0.00012 32.6 4.7 35 333-379 1-35 (80)
232 TIGR02622 CDP_4_6_dhtase CDP-g 75.8 7.9 0.00017 39.7 6.9 106 329-446 2-127 (349)
233 PRK06823 ornithine cyclodeamin 75.5 19 0.00041 37.7 9.7 105 330-459 127-236 (315)
234 cd08237 ribitol-5-phosphate_DH 75.4 60 0.0013 33.4 13.2 35 330-374 163-197 (341)
235 PRK02472 murD UDP-N-acetylmura 75.3 8.2 0.00018 41.1 7.1 35 329-375 3-37 (447)
236 PRK06407 ornithine cyclodeamin 75.2 12 0.00027 38.7 8.2 105 330-459 116-226 (301)
237 PTZ00142 6-phosphogluconate de 75.2 5.4 0.00012 44.1 5.9 97 333-449 3-104 (470)
238 PRK11790 D-3-phosphoglycerate 75.1 29 0.00063 37.6 11.3 170 298-503 97-297 (409)
239 PRK06270 homoserine dehydrogen 75.1 22 0.00048 37.4 10.2 104 332-443 3-123 (341)
240 KOG1495 Lactate dehydrogenase 75.0 11 0.00025 39.6 7.7 130 327-479 16-169 (332)
241 PLN02520 bifunctional 3-dehydr 74.6 6.3 0.00014 44.0 6.3 38 326-375 374-411 (529)
242 KOG0069 Glyoxylate/hydroxypyru 74.5 21 0.00045 38.3 9.7 164 309-507 120-310 (336)
243 cd01484 E1-2_like Ubiquitin ac 74.4 4 8.7E-05 41.1 4.3 32 333-375 1-32 (234)
244 PRK06928 pyrroline-5-carboxyla 73.8 13 0.00028 37.8 7.8 35 332-375 2-37 (277)
245 PLN02545 3-hydroxybutyryl-CoA 73.7 17 0.00037 36.8 8.6 32 332-375 5-36 (295)
246 PRK09754 phenylpropionate diox 73.2 4.8 0.0001 42.4 4.7 36 330-375 2-37 (396)
247 PRK07877 hypothetical protein; 73.2 6.6 0.00014 45.8 6.2 101 327-446 103-229 (722)
248 PRK07502 cyclohexadienyl dehyd 72.8 13 0.00028 38.0 7.6 34 332-375 7-40 (307)
249 PRK10886 DnaA initiator-associ 72.5 15 0.00033 36.0 7.7 100 329-443 39-141 (196)
250 PF02737 3HCDH_N: 3-hydroxyacy 72.2 5.3 0.00011 38.2 4.3 110 333-461 1-124 (180)
251 cd01486 Apg7 Apg7 is an E1-lik 72.1 4.6 9.9E-05 42.6 4.2 32 333-375 1-32 (307)
252 COG0240 GpsA Glycerol-3-phosph 72.0 6.3 0.00014 41.9 5.2 94 332-446 2-105 (329)
253 COG0190 FolD 5,10-methylene-te 71.4 11 0.00023 39.5 6.6 123 277-443 92-225 (283)
254 COG0499 SAM1 S-adenosylhomocys 71.4 14 0.0003 40.3 7.6 120 304-458 185-306 (420)
255 TIGR01292 TRX_reduct thioredox 71.3 5 0.00011 39.3 4.1 31 333-375 2-32 (300)
256 cd01488 Uba3_RUB Ubiquitin act 71.2 4.8 0.0001 41.9 4.1 32 333-375 1-32 (291)
257 PF03446 NAD_binding_2: NAD bi 70.6 4.2 9E-05 37.8 3.2 102 332-461 2-107 (163)
258 TIGR02028 ChlP geranylgeranyl 70.3 5.1 0.00011 42.5 4.1 31 333-375 2-32 (398)
259 TIGR03693 ocin_ThiF_like putat 70.0 21 0.00045 41.2 8.9 153 256-442 68-235 (637)
260 COG5322 Predicted dehydrogenas 70.0 10 0.00022 40.0 6.0 45 308-352 144-189 (351)
261 COG1052 LdhA Lactate dehydroge 70.0 31 0.00066 36.5 9.7 94 324-447 139-237 (324)
262 PRK11883 protoporphyrinogen ox 69.9 3 6.5E-05 43.7 2.3 22 332-353 1-22 (451)
263 PF03447 NAD_binding_3: Homose 69.5 9.1 0.0002 33.4 4.9 88 338-443 1-88 (117)
264 TIGR01214 rmlD dTDP-4-dehydror 69.4 18 0.00039 35.5 7.5 59 333-421 1-60 (287)
265 COG0569 TrkA K+ transport syst 69.3 7.5 0.00016 38.6 4.8 98 333-449 2-104 (225)
266 TIGR02023 BchP-ChlP geranylger 69.0 5.8 0.00013 41.5 4.2 31 333-375 2-32 (388)
267 COG2423 Predicted ornithine cy 68.9 22 0.00047 37.9 8.4 121 314-461 115-241 (330)
268 PRK08618 ornithine cyclodeamin 68.5 12 0.00026 39.0 6.3 102 330-457 126-233 (325)
269 COG1486 CelF Alpha-galactosida 68.4 5.4 0.00012 44.0 3.9 130 330-474 2-172 (442)
270 TIGR00873 gnd 6-phosphoglucona 68.4 13 0.00028 41.1 6.9 94 334-447 2-99 (467)
271 PRK12409 D-amino acid dehydrog 68.4 6.5 0.00014 41.2 4.4 33 332-376 2-34 (410)
272 PRK15181 Vi polysaccharide bio 68.1 21 0.00046 36.8 8.0 105 325-446 9-141 (348)
273 cd01489 Uba2_SUMO Ubiquitin ac 68.0 6.7 0.00015 41.2 4.4 32 333-375 1-32 (312)
274 PRK01713 ornithine carbamoyltr 66.9 33 0.00072 36.4 9.3 138 262-419 91-233 (334)
275 PF05834 Lycopene_cycl: Lycope 66.5 7 0.00015 41.1 4.2 35 334-378 2-36 (374)
276 PRK06249 2-dehydropantoate 2-r 66.4 18 0.00039 37.1 7.1 104 330-450 4-110 (313)
277 KOG2337 Ubiquitin activating E 66.1 5.1 0.00011 45.2 3.2 37 329-376 338-374 (669)
278 PRK06046 alanine dehydrogenase 66.0 36 0.00078 35.5 9.3 103 330-458 128-236 (326)
279 PRK06184 hypothetical protein; 65.7 7.7 0.00017 42.2 4.5 34 330-375 2-35 (502)
280 PRK06847 hypothetical protein; 65.4 8.3 0.00018 39.5 4.4 22 331-352 4-25 (375)
281 cd00377 ICL_PEPM Members of th 65.3 1.6E+02 0.0034 29.7 14.6 53 411-471 173-225 (243)
282 TIGR00465 ilvC ketol-acid redu 65.2 20 0.00044 37.6 7.3 25 329-353 1-25 (314)
283 PRK06718 precorrin-2 dehydroge 65.2 8.7 0.00019 37.6 4.3 35 328-374 7-41 (202)
284 PRK06476 pyrroline-5-carboxyla 65.1 17 0.00036 36.2 6.4 33 333-374 2-34 (258)
285 TIGR01757 Malate-DH_plant mala 65.1 28 0.00061 37.8 8.5 135 331-477 44-200 (387)
286 PRK07236 hypothetical protein; 64.7 9.4 0.0002 39.8 4.7 25 329-353 4-28 (386)
287 PLN02688 pyrroline-5-carboxyla 64.6 25 0.00054 34.8 7.5 34 333-374 2-36 (266)
288 COG0644 FixC Dehydrogenases (f 64.5 8.4 0.00018 40.7 4.4 35 332-378 4-38 (396)
289 PRK06719 precorrin-2 dehydroge 64.2 9.5 0.00021 35.9 4.2 35 328-374 10-44 (157)
290 PRK08163 salicylate hydroxylas 63.9 8.8 0.00019 39.7 4.3 22 331-352 4-25 (396)
291 PF02423 OCD_Mu_crystall: Orni 63.9 10 0.00022 39.4 4.8 104 331-459 128-238 (313)
292 PRK09564 coenzyme A disulfide 63.8 9.7 0.00021 40.4 4.7 36 332-377 1-36 (444)
293 PRK05808 3-hydroxybutyryl-CoA 63.6 15 0.00032 37.0 5.7 31 332-374 4-34 (282)
294 PRK07233 hypothetical protein; 63.2 8 0.00017 40.1 3.9 31 333-375 1-31 (434)
295 PF03435 Saccharop_dh: Sacchar 63.2 3.9 8.4E-05 42.9 1.6 91 334-443 1-96 (386)
296 PRK09126 hypothetical protein; 63.1 8.9 0.00019 39.6 4.2 23 331-353 3-25 (392)
297 COG1179 Dinucleotide-utilizing 63.0 6.3 0.00014 40.6 2.9 108 328-449 27-162 (263)
298 KOG2250 Glutamate/leucine/phen 62.9 58 0.0013 36.7 10.4 186 257-461 159-379 (514)
299 PF01266 DAO: FAD dependent ox 62.9 11 0.00023 37.4 4.5 32 333-376 1-32 (358)
300 TIGR01181 dTDP_gluc_dehyt dTDP 62.8 31 0.00067 33.9 7.7 77 333-421 1-83 (317)
301 PRK04176 ribulose-1,5-biphosph 62.6 9.1 0.0002 38.6 4.0 34 331-376 25-58 (257)
302 PRK11199 tyrA bifunctional cho 62.5 35 0.00075 36.4 8.5 32 332-375 99-131 (374)
303 KOG2304 3-hydroxyacyl-CoA dehy 62.4 6.5 0.00014 40.5 2.9 32 332-375 12-43 (298)
304 PF13454 NAD_binding_9: FAD-NA 62.4 7.6 0.00017 35.8 3.2 36 335-377 1-36 (156)
305 TIGR03169 Nterm_to_SelD pyridi 62.4 4.6 0.0001 41.6 1.9 36 333-377 1-36 (364)
306 PRK13512 coenzyme A disulfide 62.4 7.6 0.00016 41.7 3.6 33 333-375 3-35 (438)
307 PRK07364 2-octaprenyl-6-methox 62.3 8.3 0.00018 40.2 3.8 23 331-353 18-40 (415)
308 TIGR01285 nifN nitrogenase mol 61.7 14 0.0003 40.3 5.5 97 319-442 299-395 (432)
309 PRK05479 ketol-acid reductoiso 61.7 29 0.00063 36.9 7.7 26 328-353 14-39 (330)
310 TIGR01790 carotene-cycl lycope 61.5 9.1 0.0002 39.6 3.9 31 334-376 2-32 (388)
311 PRK06475 salicylate hydroxylas 61.3 9.3 0.0002 40.1 4.0 21 332-352 3-23 (400)
312 PLN02172 flavin-containing mon 61.2 11 0.00024 41.2 4.7 26 328-353 7-32 (461)
313 PRK12771 putative glutamate sy 61.0 16 0.00034 40.7 5.9 35 329-375 135-169 (564)
314 TIGR01470 cysG_Nterm siroheme 60.8 12 0.00025 36.8 4.3 36 328-375 6-41 (205)
315 KOG0743 AAA+-type ATPase [Post 60.6 13 0.00028 41.3 5.0 104 199-339 241-345 (457)
316 PLN02240 UDP-glucose 4-epimera 60.4 18 0.0004 36.6 5.8 106 328-445 2-131 (352)
317 PRK12828 short chain dehydroge 60.4 17 0.00036 34.2 5.1 36 328-375 4-40 (239)
318 PLN00093 geranylgeranyl diphos 60.3 10 0.00022 41.3 4.2 22 332-353 40-61 (450)
319 PRK12429 3-hydroxybutyrate deh 60.3 18 0.00039 34.5 5.5 35 329-375 2-37 (258)
320 PRK05866 short chain dehydroge 60.2 19 0.00042 36.3 5.9 38 326-375 35-73 (293)
321 PRK05993 short chain dehydroge 60.2 21 0.00045 35.3 6.0 32 332-375 5-37 (277)
322 PLN02268 probable polyamine ox 60.0 4.1 8.9E-05 43.1 1.1 21 333-353 2-22 (435)
323 PF13450 NAD_binding_8: NAD(P) 59.9 13 0.00028 30.1 3.8 30 336-377 1-30 (68)
324 TIGR02032 GG-red-SF geranylger 59.8 11 0.00024 36.5 4.0 32 333-376 2-33 (295)
325 KOG2018 Predicted dinucleotide 59.6 10 0.00022 40.7 3.8 40 327-377 70-109 (430)
326 cd01968 Nitrogenase_NifE_I Nit 59.3 13 0.00029 39.7 4.8 86 319-420 275-365 (410)
327 PRK07045 putative monooxygenas 59.3 12 0.00026 38.9 4.3 22 332-353 6-27 (388)
328 PRK06753 hypothetical protein; 59.1 12 0.00026 38.5 4.2 21 333-353 2-22 (373)
329 PRK12810 gltD glutamate syntha 58.6 12 0.00027 40.6 4.5 34 330-375 142-175 (471)
330 COG2072 TrkA Predicted flavopr 58.5 13 0.00029 40.5 4.7 36 330-376 7-42 (443)
331 COG1250 FadB 3-hydroxyacyl-CoA 58.5 64 0.0014 34.1 9.5 106 405-519 103-217 (307)
332 PRK05732 2-octaprenyl-6-methox 58.4 13 0.00029 38.3 4.5 36 331-375 3-38 (395)
333 TIGR03026 NDP-sugDHase nucleot 58.2 35 0.00076 36.5 7.7 31 333-375 2-32 (411)
334 COG0476 ThiF Dinucleotide-util 58.1 9 0.00019 38.2 3.1 56 293-375 8-63 (254)
335 PF01946 Thi4: Thi4 family; PD 58.0 15 0.00033 37.3 4.6 37 330-378 16-52 (230)
336 TIGR01316 gltA glutamate synth 57.9 15 0.00032 39.8 4.8 36 328-375 130-165 (449)
337 PRK12769 putative oxidoreducta 57.7 13 0.00028 42.3 4.5 34 330-375 326-359 (654)
338 PTZ00431 pyrroline carboxylate 57.7 35 0.00077 34.2 7.2 104 330-449 2-116 (260)
339 PRK01438 murD UDP-N-acetylmura 57.7 16 0.00034 39.6 5.1 28 325-352 10-37 (480)
340 PRK07608 ubiquinone biosynthes 57.5 12 0.00025 38.7 3.9 32 332-375 6-37 (388)
341 PLN02695 GDP-D-mannose-3',5'-e 57.5 35 0.00077 35.8 7.5 97 330-446 20-137 (370)
342 PRK10157 putative oxidoreducta 57.3 12 0.00026 40.2 4.0 22 332-353 6-27 (428)
343 PRK12779 putative bifunctional 56.8 14 0.0003 44.3 4.8 40 329-380 304-347 (944)
344 cd01493 APPBP1_RUB Ubiquitin a 56.6 10 0.00022 41.6 3.3 38 327-375 16-53 (425)
345 PRK07589 ornithine cyclodeamin 56.5 59 0.0013 34.7 9.0 103 331-458 129-238 (346)
346 PRK00536 speE spermidine synth 56.5 18 0.0004 37.2 5.0 84 332-434 74-158 (262)
347 PRK04965 NADH:flavorubredoxin 56.4 11 0.00023 39.4 3.4 35 332-376 3-37 (377)
348 PRK06416 dihydrolipoamide dehy 56.4 13 0.00028 39.9 4.2 33 332-376 5-37 (462)
349 PTZ00245 ubiquitin activating 56.2 11 0.00024 39.4 3.3 39 327-376 22-60 (287)
350 PLN02676 polyamine oxidase 56.2 29 0.00064 38.2 6.9 36 331-377 26-61 (487)
351 TIGR00292 thiazole biosynthesi 56.0 13 0.00029 37.4 3.9 37 330-378 20-56 (254)
352 PRK08773 2-octaprenyl-3-methyl 55.6 12 0.00025 39.0 3.5 34 331-376 6-39 (392)
353 TIGR01984 UbiH 2-polyprenyl-6- 55.6 12 0.00026 38.5 3.5 20 334-353 2-21 (382)
354 PRK05749 3-deoxy-D-manno-octul 55.5 37 0.0008 35.8 7.3 38 401-443 311-349 (425)
355 TIGR00441 gmhA phosphoheptose 55.5 73 0.0016 29.5 8.4 37 411-449 79-117 (154)
356 PRK07251 pyridine nucleotide-d 55.5 14 0.00031 39.3 4.3 33 332-376 4-36 (438)
357 PRK14806 bifunctional cyclohex 55.4 35 0.00076 39.2 7.6 93 332-446 4-97 (735)
358 PTZ00318 NADH dehydrogenase-li 55.3 12 0.00026 40.0 3.6 23 328-350 7-29 (424)
359 PRK12829 short chain dehydroge 55.3 26 0.00056 33.7 5.6 36 328-375 8-44 (264)
360 PRK07819 3-hydroxybutyryl-CoA 55.2 16 0.00034 37.5 4.3 87 411-505 112-207 (286)
361 TIGR01373 soxB sarcosine oxida 54.9 18 0.0004 37.8 4.9 38 330-377 29-66 (407)
362 PRK09987 dTDP-4-dehydrorhamnos 54.8 49 0.0011 33.4 7.7 86 333-446 2-104 (299)
363 PRK12266 glpD glycerol-3-phosp 54.8 14 0.00031 40.7 4.2 33 332-376 7-39 (508)
364 PRK06841 short chain dehydroge 54.7 22 0.00048 34.1 5.1 36 328-375 12-48 (255)
365 TIGR01179 galE UDP-glucose-4-e 54.6 49 0.0011 32.5 7.6 97 333-444 1-119 (328)
366 PLN02463 lycopene beta cyclase 54.6 14 0.0003 40.5 4.0 32 332-375 29-60 (447)
367 PRK08013 oxidoreductase; Provi 54.6 15 0.00032 38.7 4.1 33 331-375 3-35 (400)
368 PRK07588 hypothetical protein; 54.6 15 0.00034 38.1 4.2 21 332-352 1-21 (391)
369 TIGR01377 soxA_mon sarcosine o 54.6 16 0.00034 37.6 4.2 33 333-377 2-34 (380)
370 TIGR01988 Ubi-OHases Ubiquinon 54.5 14 0.00029 37.8 3.8 31 334-376 2-32 (385)
371 PLN02427 UDP-apiose/xylose syn 54.4 40 0.00086 35.2 7.2 83 322-421 5-96 (386)
372 PRK08849 2-octaprenyl-3-methyl 54.2 16 0.00035 38.1 4.3 32 332-375 4-35 (384)
373 TIGR01505 tartro_sem_red 2-hyd 54.1 36 0.00077 34.4 6.6 31 333-375 1-31 (291)
374 PF06690 DUF1188: Protein of u 54.0 28 0.00061 35.9 5.8 89 326-449 39-128 (252)
375 PRK06185 hypothetical protein; 54.0 15 0.00033 38.2 4.1 34 331-376 6-39 (407)
376 PRK12491 pyrroline-5-carboxyla 54.0 49 0.0011 33.7 7.6 35 332-374 3-37 (272)
377 PRK06138 short chain dehydroge 53.9 25 0.00055 33.5 5.3 36 328-375 2-38 (252)
378 PRK11259 solA N-methyltryptoph 53.8 16 0.00036 37.3 4.2 34 331-376 3-36 (376)
379 TIGR03589 PseB UDP-N-acetylglu 53.7 33 0.00071 35.1 6.4 106 329-446 2-125 (324)
380 PRK07424 bifunctional sterol d 53.7 20 0.00044 38.9 5.0 54 295-375 157-211 (406)
381 PRK08244 hypothetical protein; 53.6 15 0.00034 39.7 4.2 22 332-353 3-24 (493)
382 TIGR00031 UDP-GALP_mutase UDP- 53.6 16 0.00035 39.3 4.3 31 333-375 3-33 (377)
383 PRK07523 gluconate 5-dehydroge 53.5 37 0.00081 32.7 6.4 36 328-375 7-43 (255)
384 PRK11749 dihydropyrimidine deh 53.4 16 0.00034 39.5 4.1 34 330-375 139-172 (457)
385 cd05006 SIS_GmhA Phosphoheptos 53.3 79 0.0017 29.6 8.4 34 411-447 101-136 (177)
386 PF00743 FMO-like: Flavin-bind 53.3 16 0.00034 41.1 4.2 32 332-375 2-33 (531)
387 PRK07067 sorbitol dehydrogenas 53.2 15 0.00032 35.6 3.6 36 328-375 3-39 (257)
388 PRK03803 murD UDP-N-acetylmura 53.1 50 0.0011 35.5 7.9 110 330-473 5-116 (448)
389 PRK11445 putative oxidoreducta 53.1 16 0.00036 37.8 4.1 20 333-352 3-22 (351)
390 PRK06392 homoserine dehydrogen 53.0 52 0.0011 34.8 7.8 82 333-420 2-90 (326)
391 PRK08243 4-hydroxybenzoate 3-m 52.9 18 0.00039 37.9 4.4 23 331-353 2-24 (392)
392 PRK08020 ubiF 2-octaprenyl-3-m 52.8 15 0.00032 38.2 3.7 33 331-375 5-37 (391)
393 COG1748 LYS9 Saccharopine dehy 52.7 21 0.00045 38.9 4.9 85 332-435 2-90 (389)
394 PRK08219 short chain dehydroge 52.6 55 0.0012 30.6 7.2 71 332-422 4-82 (227)
395 PRK08294 phenol 2-monooxygenas 52.5 15 0.00032 41.9 4.0 35 330-375 31-65 (634)
396 PRK12770 putative glutamate sy 52.4 19 0.00041 37.3 4.5 34 330-375 17-50 (352)
397 PRK07538 hypothetical protein; 52.3 17 0.00037 38.3 4.2 20 333-352 2-21 (413)
398 PRK11728 hydroxyglutarate oxid 52.3 16 0.00035 38.2 3.9 34 332-375 3-36 (393)
399 cd01490 Ube1_repeat2 Ubiquitin 52.3 16 0.00035 40.3 4.1 37 333-375 1-37 (435)
400 PRK09186 flagellin modificatio 52.2 16 0.00034 35.0 3.6 35 329-375 2-37 (256)
401 PRK00711 D-amino acid dehydrog 52.1 18 0.00038 37.8 4.2 31 333-375 2-32 (416)
402 TIGR01789 lycopene_cycl lycope 52.1 21 0.00046 37.7 4.8 36 334-379 2-37 (370)
403 COG0654 UbiH 2-polyprenyl-6-me 51.9 18 0.00039 38.0 4.2 33 331-375 2-34 (387)
404 PRK06182 short chain dehydroge 51.8 25 0.00055 34.4 5.0 77 330-422 2-85 (273)
405 PRK10262 thioredoxin reductase 51.7 13 0.00028 37.7 3.1 25 329-353 4-28 (321)
406 PRK14852 hypothetical protein; 51.7 13 0.00028 44.9 3.4 39 327-376 328-366 (989)
407 PRK14694 putative mercuric red 51.7 19 0.00041 38.9 4.5 34 330-375 5-38 (468)
408 TIGR03736 PRTRC_ThiF PRTRC sys 51.3 22 0.00047 36.3 4.5 47 330-377 10-56 (244)
409 PRK05714 2-octaprenyl-3-methyl 51.2 14 0.00031 38.6 3.3 31 333-375 4-34 (405)
410 PRK00048 dihydrodipicolinate r 51.1 94 0.002 31.4 9.0 88 332-444 2-90 (257)
411 TIGR02053 MerA mercuric reduct 51.1 18 0.00039 38.9 4.2 30 334-375 3-32 (463)
412 PRK12831 putative oxidoreducta 50.8 20 0.00043 39.2 4.5 34 330-375 139-172 (464)
413 PRK11101 glpA sn-glycerol-3-ph 50.7 19 0.00041 40.2 4.4 32 332-375 7-38 (546)
414 PRK04346 tryptophan synthase s 50.7 2.7E+02 0.0058 30.4 12.9 95 225-352 23-128 (397)
415 KOG2012 Ubiquitin activating e 50.6 9.5 0.00021 45.2 2.1 117 327-469 426-552 (1013)
416 PRK12416 protoporphyrinogen ox 50.6 10 0.00022 40.6 2.2 22 332-353 2-23 (463)
417 PRK13369 glycerol-3-phosphate 50.5 18 0.00038 39.7 4.1 32 332-375 7-38 (502)
418 PRK12814 putative NADPH-depend 50.4 20 0.00043 41.0 4.6 34 330-375 192-225 (652)
419 PRK08010 pyridine nucleotide-d 50.3 17 0.00037 38.8 3.8 32 332-375 4-35 (441)
420 PRK01747 mnmC bifunctional tRN 50.3 20 0.00043 40.8 4.5 33 332-376 261-293 (662)
421 PRK06912 acoL dihydrolipoamide 50.3 19 0.00041 38.8 4.2 31 333-375 2-32 (458)
422 PRK13938 phosphoheptose isomer 50.1 50 0.0011 32.4 6.7 37 411-449 113-151 (196)
423 PRK00141 murD UDP-N-acetylmura 50.0 21 0.00045 39.1 4.5 26 328-353 12-37 (473)
424 PRK10015 oxidoreductase; Provi 50.0 18 0.00039 38.9 4.0 33 332-376 6-38 (429)
425 PRK09853 putative selenate red 49.8 20 0.00042 43.6 4.5 35 329-375 537-571 (1019)
426 TIGR03143 AhpF_homolog putativ 49.8 18 0.0004 40.3 4.1 32 333-376 6-37 (555)
427 TIGR01350 lipoamide_DH dihydro 49.8 20 0.00043 38.4 4.2 30 333-374 3-32 (461)
428 PRK12778 putative bifunctional 49.7 23 0.00051 40.9 5.0 35 329-375 429-463 (752)
429 PRK03515 ornithine carbamoyltr 49.7 1.1E+02 0.0023 32.7 9.6 138 262-419 90-233 (336)
430 PF12831 FAD_oxidored: FAD dep 49.6 20 0.00044 38.5 4.3 33 334-378 2-34 (428)
431 PRK08850 2-octaprenyl-6-methox 49.6 20 0.00043 37.7 4.1 33 331-375 4-36 (405)
432 PRK07333 2-octaprenyl-6-methox 49.5 16 0.00035 37.8 3.4 21 333-353 3-23 (403)
433 PRK06545 prephenate dehydrogen 49.5 50 0.0011 34.8 7.1 22 332-353 1-22 (359)
434 PRK07494 2-octaprenyl-6-methox 49.3 20 0.00043 37.1 4.1 34 331-376 7-40 (388)
435 COG0562 Glf UDP-galactopyranos 49.2 19 0.00042 38.7 3.9 34 333-378 3-36 (374)
436 cd04951 GT1_WbdM_like This fam 49.2 1.4E+02 0.003 29.4 9.8 37 402-443 255-291 (360)
437 TIGR03364 HpnW_proposed FAD de 49.0 20 0.00043 36.8 4.0 31 333-375 2-32 (365)
438 PRK05976 dihydrolipoamide dehy 49.0 22 0.00047 38.5 4.4 33 331-375 4-36 (472)
439 cd01976 Nitrogenase_MoFe_alpha 48.9 39 0.00084 36.7 6.3 87 318-420 287-378 (421)
440 PLN02568 polyamine oxidase 48.8 11 0.00024 42.2 2.2 24 330-353 4-27 (539)
441 PRK06834 hypothetical protein; 48.7 23 0.00049 39.0 4.5 35 330-376 2-36 (488)
442 COG3349 Uncharacterized conser 48.5 14 0.0003 41.4 2.8 44 332-380 1-51 (485)
443 PRK06292 dihydrolipoamide dehy 48.4 22 0.00048 38.1 4.3 32 332-375 4-35 (460)
444 TIGR01282 nifD nitrogenase mol 48.4 46 0.001 36.7 6.9 85 320-420 324-413 (466)
445 TIGR02360 pbenz_hydroxyl 4-hyd 48.4 22 0.00049 37.4 4.3 21 332-352 3-23 (390)
446 PRK13403 ketol-acid reductoiso 48.3 38 0.00083 36.3 6.0 64 327-416 12-76 (335)
447 TIGR00274 N-acetylmuramic acid 48.2 40 0.00087 35.0 6.0 38 411-450 126-165 (291)
448 PRK08132 FAD-dependent oxidore 48.0 21 0.00046 39.4 4.2 22 331-352 23-44 (547)
449 TIGR03315 Se_ygfK putative sel 48.0 21 0.00045 43.4 4.4 33 331-375 537-569 (1012)
450 PRK11559 garR tartronate semia 48.0 64 0.0014 32.5 7.4 32 332-375 3-34 (296)
451 KOG1370 S-adenosylhomocysteine 47.7 53 0.0011 35.4 6.8 119 323-469 206-338 (434)
452 PRK00683 murD UDP-N-acetylmura 47.7 91 0.002 33.4 8.8 113 331-485 3-115 (418)
453 PRK05868 hypothetical protein; 47.7 23 0.0005 37.1 4.2 21 332-352 2-22 (372)
454 PF00732 GMC_oxred_N: GMC oxid 47.6 16 0.00035 36.3 2.9 35 334-379 3-37 (296)
455 COG1893 ApbA Ketopantoate redu 47.6 52 0.0011 34.3 6.8 100 332-453 1-108 (307)
456 PRK04690 murD UDP-N-acetylmura 47.6 22 0.00049 38.8 4.3 25 329-353 6-30 (468)
457 PF04320 DUF469: Protein with 47.5 16 0.00035 32.8 2.6 33 253-285 27-62 (101)
458 TIGR01082 murC UDP-N-acetylmur 47.4 36 0.00077 36.7 5.7 111 333-486 1-113 (448)
459 PLN02653 GDP-mannose 4,6-dehyd 47.3 73 0.0016 32.4 7.7 82 328-421 3-93 (340)
460 CHL00076 chlB photochlorophyll 47.3 25 0.00055 39.3 4.7 80 326-419 300-382 (513)
461 COG1063 Tdh Threonine dehydrog 47.1 34 0.00074 35.9 5.4 100 305-422 143-249 (350)
462 PRK04663 murD UDP-N-acetylmura 47.0 70 0.0015 34.5 7.8 112 329-473 4-116 (438)
463 PRK11154 fadJ multifunctional 46.9 2.2E+02 0.0048 33.2 12.3 101 408-517 413-521 (708)
464 TIGR01408 Ube1 ubiquitin-activ 46.8 17 0.00037 44.0 3.5 39 327-376 20-58 (1008)
465 TIGR01317 GOGAT_sm_gam glutama 46.7 25 0.00054 38.7 4.5 34 330-375 142-175 (485)
466 COG4017 Uncharacterized protei 46.5 51 0.0011 33.4 6.1 91 328-450 42-132 (254)
467 PRK06126 hypothetical protein; 46.4 26 0.00055 38.6 4.5 35 330-376 6-40 (545)
468 COG0529 CysC Adenylylsulfate k 46.3 18 0.0004 35.9 3.0 14 61-74 66-79 (197)
469 TIGR01286 nifK nitrogenase mol 46.1 35 0.00076 38.3 5.5 34 319-352 351-384 (515)
470 COG0665 DadA Glycine/D-amino a 46.0 29 0.00063 35.5 4.6 37 330-378 3-39 (387)
471 PF02558 ApbA: Ketopantoate re 46.0 29 0.00063 31.1 4.1 98 334-448 1-103 (151)
472 PRK06183 mhpA 3-(3-hydroxyphen 45.9 24 0.00052 38.9 4.2 23 330-352 9-31 (538)
473 PRK05249 soluble pyridine nucl 45.7 28 0.0006 37.3 4.6 34 331-376 5-38 (461)
474 PRK11730 fadB multifunctional 45.7 23 0.0005 41.1 4.2 102 408-518 416-525 (715)
475 PRK13394 3-hydroxybutyrate deh 45.6 37 0.0008 32.6 5.0 36 328-375 4-40 (262)
476 PRK07190 hypothetical protein; 45.6 27 0.00058 38.5 4.5 34 331-376 5-38 (487)
477 COG1252 Ndh NADH dehydrogenase 45.4 21 0.00045 39.1 3.6 35 331-375 3-37 (405)
478 PF01408 GFO_IDH_MocA: Oxidore 45.0 31 0.00067 29.5 4.0 90 333-443 2-91 (120)
479 PLN02852 ferredoxin-NADP+ redu 45.0 15 0.00032 41.0 2.4 41 325-375 20-60 (491)
480 TIGR00658 orni_carb_tr ornithi 44.8 1.4E+02 0.0031 31.2 9.4 136 262-419 84-224 (304)
481 PRK06617 2-octaprenyl-6-methox 44.7 23 0.0005 36.9 3.7 20 333-352 3-22 (374)
482 PLN02350 phosphogluconate dehy 44.2 47 0.001 37.2 6.1 97 333-449 8-110 (493)
483 PRK08265 short chain dehydroge 44.2 25 0.00054 34.3 3.7 36 328-375 3-39 (261)
484 PLN02172 flavin-containing mon 44.2 27 0.00058 38.4 4.2 36 329-376 202-237 (461)
485 PLN02657 3,8-divinyl protochlo 44.1 85 0.0018 33.4 7.9 107 325-443 54-179 (390)
486 PRK09897 hypothetical protein; 44.0 30 0.00065 39.0 4.6 33 333-375 3-35 (534)
487 PRK06200 2,3-dihydroxy-2,3-dih 44.0 24 0.00051 34.3 3.4 36 328-375 3-39 (263)
488 PRK13748 putative mercuric red 43.9 25 0.00055 38.7 4.0 33 331-375 98-130 (561)
489 PF03486 HI0933_like: HI0933-l 43.9 23 0.00051 38.4 3.7 31 333-375 2-32 (409)
490 PRK12823 benD 1,6-dihydroxycyc 43.8 45 0.00097 32.2 5.3 37 327-375 4-41 (260)
491 cd01974 Nitrogenase_MoFe_beta 43.8 25 0.00054 38.1 3.9 103 320-449 292-405 (435)
492 TIGR03325 BphB_TodD cis-2,3-di 43.5 27 0.00059 34.0 3.8 36 328-375 2-38 (262)
493 TIGR03088 stp2 sugar transfera 43.5 1.5E+02 0.0032 30.2 9.2 37 402-443 265-301 (374)
494 PRK12562 ornithine carbamoyltr 43.4 1.7E+02 0.0037 31.2 9.9 138 262-419 90-233 (334)
495 PRK08339 short chain dehydroge 43.3 42 0.00091 33.0 5.1 37 327-375 4-41 (263)
496 PRK09466 metL bifunctional asp 43.2 66 0.0014 38.2 7.4 107 330-443 457-570 (810)
497 PRK07478 short chain dehydroge 43.1 62 0.0014 31.1 6.2 36 328-375 3-39 (254)
498 PLN02927 antheraxanthin epoxid 42.7 23 0.00049 41.1 3.5 25 329-353 79-103 (668)
499 PRK06523 short chain dehydroge 42.7 80 0.0017 30.4 6.9 37 327-375 5-42 (260)
500 PF02254 TrkA_N: TrkA-N domain 42.6 39 0.00086 28.8 4.2 98 334-449 1-100 (116)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=5.8e-202 Score=1574.87 Aligned_cols=489 Identities=65% Similarity=1.061 Sum_probs=476.8
Q ss_pred cCcccccccccccc-ccccccccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHH
Q 009950 32 GEDRATEDQLVTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYV 110 (521)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~G~~ll~~p~~NKG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~ky~ 110 (521)
+++..+..+...+| +.++.+|+++|+||++|||+|||.+|||+|||||||||.|+|+|+|++|++.+|+++++||+||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~ 89 (582)
T KOG1257|consen 10 STAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYI 89 (582)
T ss_pred cCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHH
Confidence 33333333334455 66788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC
Q 009950 111 AMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG 190 (521)
Q Consensus 111 ~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG 190 (521)
||++||+|||+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||
T Consensus 90 ~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDG 169 (582)
T KOG1257|consen 90 YLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDG 169 (582)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCccccchhhhhHHhhhcCCCCCceeeEEEecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHH
Q 009950 191 ERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVK 270 (521)
Q Consensus 191 ~rILGLGDlG~~GmgI~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~ 270 (521)
+|||||||||++|||||+||++||||||||+|++|||||||||||||+||+||||+|+||+|++|++||+|+||||+||+
T Consensus 170 erILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~ 249 (582)
T KOG1257|consen 170 ERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVV 249 (582)
T ss_pred CceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeeeeeecCCCccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHH
Q 009950 271 QNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELI 350 (521)
Q Consensus 271 ~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll 350 (521)
++|||+++||||||+++|||++|+|||.++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||
T Consensus 250 ~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~ 329 (582)
T KOG1257|consen 250 QRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLI 329 (582)
T ss_pred HHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHH
Q 009950 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 430 (521)
Q Consensus 351 ~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv 430 (521)
+.+|+++ |+|+|||++||||+|++|||+++|+.+++++|++||++++++++|+|||+.||||||||+|++||+||||||
T Consensus 330 v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl 408 (582)
T KOG1257|consen 330 VMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVL 408 (582)
T ss_pred HHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHH
Confidence 9999996 999999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCc
Q 009950 431 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIR 510 (521)
Q Consensus 431 ~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~ 510 (521)
|+|+++|||||||||||||+++||||||||+||+|||||||||||+||+++||+|+|||+||+|+|||||||+++|++++
T Consensus 409 ~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~ 488 (582)
T KOG1257|consen 409 RAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARR 488 (582)
T ss_pred HHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHhhcC
Q 009950 511 VHDDMLLAACK 521 (521)
Q Consensus 511 Itd~M~~aAA~ 521 (521)
|+|+||++||+
T Consensus 489 i~D~mfl~Aae 499 (582)
T KOG1257|consen 489 IPDEMFLAAAE 499 (582)
T ss_pred CCHHHHHHHHH
Confidence 99999999985
No 2
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=6.4e-194 Score=1546.56 Aligned_cols=473 Identities=75% Similarity=1.194 Sum_probs=467.6
Q ss_pred cccccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHHHhh
Q 009950 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLI 128 (521)
Q Consensus 49 ~~~G~~ll~~p~~NKG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 128 (521)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccccch
Q 009950 129 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 208 (521)
Q Consensus 129 ~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~~ 208 (521)
+|++|+||||||||||+||++||++||+|+|||||++|+|+|+++|+|||.++|+|||||||||||||||+|++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhhcCCCCCceeeEEEecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCcc
Q 009950 209 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 288 (521)
Q Consensus 209 GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~ 288 (521)
||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 009950 289 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (521)
Q Consensus 289 af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (521)
||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||++|
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009950 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (521)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (521)
||+||++|||+++|.++|+++|++||++.++..+|+|||+++|||||||+|+++|+||||||++|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhcC
Q 009950 449 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAACK 521 (521)
Q Consensus 449 t~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 521 (521)
|++|||||||||+||+|+|||||||||+||+|+||+++|||+||+|||||||||+++++|++|||+||++||+
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~ 511 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAE 511 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-194 Score=1542.14 Aligned_cols=472 Identities=51% Similarity=0.889 Sum_probs=464.1
Q ss_pred cccccccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHHH
Q 009950 47 ISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKL 126 (521)
Q Consensus 47 ~~~~~G~~ll~~p~~NKG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 126 (521)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCcccc
Q 009950 127 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGI 206 (521)
Q Consensus 127 l~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI 206 (521)
+++|+||+||||||||||+|||+||++||+|+|||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhhhcCCCCCceeeEEEecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCC
Q 009950 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN 286 (521)
Q Consensus 207 ~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~ 286 (521)
||||++|||+||||||++|||||||+|||||+||+||+|+|+||||++|++|++|+||||++|+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc
Q 009950 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (521)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~ 366 (521)
+|||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||++|+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 599999999
Q ss_pred CcEEEEecCCccccCCccCCchhchhhccccCCC---------CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCC
Q 009950 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (521)
Q Consensus 367 ~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~---------~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (521)
+|||+||++|||+++|.+ |+++|++||++.++. .+|+|||+++|||||||+|+++|+||||||++|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999975 999999999975543 6999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHH
Q 009950 438 EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLL 517 (521)
Q Consensus 438 erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~ 517 (521)
+|||||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||+
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~ 488 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLM 488 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 009950 518 AACK 521 (521)
Q Consensus 518 aAA~ 521 (521)
+||+
T Consensus 489 aAA~ 492 (563)
T PRK13529 489 AAAH 492 (563)
T ss_pred HHHH
Confidence 9985
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.1e-193 Score=1539.47 Aligned_cols=474 Identities=51% Similarity=0.857 Sum_probs=465.4
Q ss_pred ccccccccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHH
Q 009950 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (521)
Q Consensus 46 ~~~~~~G~~ll~~p~~NKG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ 125 (521)
..+..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccc
Q 009950 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMG 205 (521)
Q Consensus 126 ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 205 (521)
++++|+||+||||||||||+||++||++||+|+|||+|++|||+|+++|+|||.++|++||||||||||||||+|++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHhhhcCCCCCceeeEEEecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 009950 206 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 285 (521)
Q Consensus 206 I~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~ 285 (521)
||+||++|||+||||||++|||||||||||||+||+||+|+||||+|++|++|++|+||||+||+.+| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhh
Q 009950 286 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (521)
Q Consensus 286 ~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA 365 (521)
++|||++|+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+++|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCcEEEEecCCccccCCccCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCc
Q 009950 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 440 (521)
Q Consensus 366 ~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~--~~---~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP 440 (521)
++|||+||++|||+++|.++|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+||||||++|+++|+||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999974 33 57999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhc
Q 009950 441 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAC 520 (521)
Q Consensus 441 IIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA 520 (521)
|||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA 490 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 009950 521 K 521 (521)
Q Consensus 521 ~ 521 (521)
+
T Consensus 491 ~ 491 (559)
T PTZ00317 491 A 491 (559)
T ss_pred H
Confidence 5
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.2e-110 Score=870.61 Aligned_cols=357 Identities=38% Similarity=0.574 Sum_probs=327.0
Q ss_pred cccHHHHHHHHHHHhhcCCC-chhHHHHhhhhhhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 009950 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 163 (521)
Q Consensus 85 v~t~e~Q~~r~~~~~~~~~~-~l~ky~~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s 163 (521)
|+|+| |.+|++.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++||+.++.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999877 99999999 899999999999999999999999999999999998888775
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCC-CCccccchhhhhHHhhhcCCCCCceeeEEEecCCCccccccC
Q 009950 164 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 242 (521)
Q Consensus 164 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~D 242 (521)
.++.+++.|||||||||||||||+| ..||||||||++|||+||||| +||||||+||+||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 3677778999999999999999999 568999999999999999999 9999999999876
Q ss_pred cccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHH--cCCCceeccCCCchHHHHHHHHHH
Q 009950 243 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY--GTTHLVFNDDIQGTASVVLAGVVA 320 (521)
Q Consensus 243 p~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ry--r~~~~~FnDDiQGTaaV~LAgll~ 320 (521)
+++||++++++||. |++||++.|+||.+++++ +.+||||||||||||+|+||||+|
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999988 999999999999887755 568999999999999999999999
Q ss_pred HHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCcc-CCchhchhhcc-ccC
Q 009950 321 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHE 398 (521)
Q Consensus 321 Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~-~l~~~k~~fa~-~~~ 398 (521)
|+|++|++|+|+||||+|||+||+||+++|..++++ ++|||+|||+|+|+++|.+ .++++|..+|. +..
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999997543 3899999999999999976 36777777775 444
Q ss_pred CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcc
Q 009950 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPF 478 (521)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv 478 (521)
...+ .+++. +||||||+|++ |+||+|+|++|+ ++|||||||||| ||++||||.+|++|++|+||||
T Consensus 260 ~~~~-~~~~~--~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr----- 325 (432)
T COG0281 260 ERTL-DLALA--GADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR----- 325 (432)
T ss_pred cccc-ccccc--CCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC-----
Confidence 4443 44555 59999999998 899999999998 569999999999 9999999999999999999996
Q ss_pred eeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhcC
Q 009950 479 EYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAACK 521 (521)
Q Consensus 479 ~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 521 (521)
+++|||+||+|+|||||+|+|++||++|||+|++|||+
T Consensus 326 -----sd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~ 363 (432)
T COG0281 326 -----SDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAE 363 (432)
T ss_pred -----CCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHH
Confidence 66777999999999999999999999999999999984
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=3.3e-104 Score=877.10 Aligned_cols=314 Identities=30% Similarity=0.507 Sum_probs=292.3
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc-cccchhh
Q 009950 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (521)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~~GK 210 (521)
.+.|+++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 355999999999999999 899999886 3566667899999999999999999997 9999999
Q ss_pred hhHHhhhcCCCCCceeeEEEecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHH
Q 009950 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 290 (521)
Q Consensus 211 l~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 290 (521)
++|||+||||| ++| +|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid---~~d----i~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID---VFD----IEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC---ccc----cccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 555 55555 687 7888 999999999987 999999999999
Q ss_pred HHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 009950 291 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (521)
Q Consensus 291 ~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (521)
+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++| |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 799999999999999999999999999999999999999999999999999976 498754 9
Q ss_pred EEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009950 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (521)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (521)
||+|||+|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|||++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 45799999998 899999998 8999999999998 59999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhcC
Q 009950 449 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAACK 521 (521)
Q Consensus 449 t~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 521 (521)
| |||+||||++ |+|++||||| |+++|||+||+|+|||||||+++++|++|||+|+++||+
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~ 350 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVH 350 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHH
Confidence 9 8999999987 9999999997 799999999999999999999999999999999999984
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=2.9e-103 Score=873.23 Aligned_cols=316 Identities=29% Similarity=0.468 Sum_probs=293.3
Q ss_pred hhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc-ccc
Q 009950 128 IDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGI 206 (521)
Q Consensus 128 ~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI 206 (521)
+.+. +.|+++|||||+++|++ |+++|+++| .|+.++|.|||||||||||||||+|++| |||
T Consensus 35 ~~~~-~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv 96 (763)
T PRK12862 35 LANQ-RDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPV 96 (763)
T ss_pred CCCH-HHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccch
Confidence 3344 55999999999999999 789999888 3677888999999999999999999997 999
Q ss_pred chhhhhHHhhhcCCCCCceeeEEEecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-eeeeeecCC
Q 009950 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFA 285 (521)
Q Consensus 207 ~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~lIq~EDf~ 285 (521)
||||++|||+||||| ++|||+| |+ || ||||++|+.+| |+ ..||||||+
T Consensus 97 ~egK~~l~~~~~gi~---~~~i~~~----~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~ 145 (763)
T PRK12862 97 MEGKAVLFKKFAGID---VFDIELD----ES----DP-------------------DKLVEIVAALE-PTFGGINLEDIK 145 (763)
T ss_pred HHHHHHHHHhhcCCC---ccccccC----CC----CH-------------------HHHHHHHHHhC-CCcceeeeeccc
Confidence 999999999999999 6666655 43 65 78888888888 76 789999999
Q ss_pred CccHHHHHHHHcCC--CceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 009950 286 NHNAFELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 363 (521)
Q Consensus 286 ~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~e 363 (521)
+||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++
T Consensus 146 ~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~- 219 (763)
T PRK12862 146 APECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR- 219 (763)
T ss_pred CchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc-
Confidence 99999999999986 99999999999999999999999999999999999999999999999999987 38863
Q ss_pred hhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009950 364 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 364 eA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (521)
+||||||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|||++|+ +|||||
T Consensus 220 ---~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piif 289 (763)
T PRK12862 220 ---ENIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIF 289 (763)
T ss_pred ---ccEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEE
Confidence 7999999999999999766999999999985 45799999999 999999999 8999999999998 899999
Q ss_pred EcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhcC
Q 009950 444 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAACK 521 (521)
Q Consensus 444 aLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 521 (521)
|||||| |||+|||||+||+| +||||| |+++|||+||+|+|||||||+++++|++|||+|+++||+
T Consensus 290 alsNP~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ 354 (763)
T PRK12862 290 ALANPT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVR 354 (763)
T ss_pred eCCCCc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHH
Confidence 999999 89999999999998 999998 799999999999999999999999999999999999984
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=2.1e-102 Score=863.01 Aligned_cols=313 Identities=32% Similarity=0.520 Sum_probs=291.2
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCC-ccccchhh
Q 009950 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 210 (521)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~~GK 210 (521)
.+.|+++|||||+++|++ |+++|+++| ++++|| +.|+|||||||||||||+|++ ||||||||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 355999999999999997 899999999 555544 579999999999999999999 79999999
Q ss_pred hhHHhhhcCCCCCceeeEEEecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-eeeeeecCCCccH
Q 009950 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNA 289 (521)
Q Consensus 211 l~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~lIq~EDf~~~~a 289 (521)
++|||+||||| ++|||+| |+ | +||||++|+..| |. .+||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~i~~~----~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFDIEVD----EE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---ccccccC----CC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 6666655 43 3 799999999999 65 4999999999999
Q ss_pred HHHHHHHcCC--CceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 009950 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (521)
Q Consensus 290 f~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~ 367 (521)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999986 3886 68
Q ss_pred cEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009950 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (521)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (521)
|||+||++|||+++|.+.|+++|++||++ .+..+|+|+|++ ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999998 455799999998 999999999 8999999999998 7999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhcC
Q 009950 448 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAACK 521 (521)
Q Consensus 448 Pt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 521 (521)
|| |||+||||++||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||+
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ 346 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVR 346 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHH
Confidence 99 89999999999999 999998 799999999999999999999999999999999999985
No 9
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1.2e-85 Score=652.41 Aligned_cols=213 Identities=54% Similarity=0.920 Sum_probs=191.8
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCC
Q 009950 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (521)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (521)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|++||++||||||++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 899999999999999999999999999999999999999999999999985 9999999999999999999999995 59
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 009950 387 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (521)
Q Consensus 387 ~~~k~~fa~~~~~~---~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt 463 (521)
+++|++|||+.++. .+|+|+|+++|||||||+|+++|+||||||++|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhcC
Q 009950 464 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAACK 521 (521)
Q Consensus 464 ~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 521 (521)
+|+|||||||||+||+|+||+|+||||||+|||||||||+++++|++|||+||++||+
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 216 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAE 216 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHH
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999985
No 10
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2.2e-83 Score=643.16 Aligned_cols=213 Identities=61% Similarity=1.013 Sum_probs=207.9
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCC
Q 009950 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (521)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (521)
|||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+++||+||++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999988 599999999999999999999999975 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC
Q 009950 387 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 464 (521)
Q Consensus 387 ~~~k~~fa~~~~--~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~ 464 (521)
+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+||+|||++|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhcC
Q 009950 465 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAACK 521 (521)
Q Consensus 465 G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 521 (521)
|+|||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+|+++||+
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~ 215 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAE 215 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999985
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=2.7e-83 Score=635.07 Aligned_cols=213 Identities=52% Similarity=0.780 Sum_probs=207.6
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCC
Q 009950 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (521)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (521)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 599999999999999999999999965 8
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 009950 387 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (521)
Q Consensus 387 ~~~k~~---fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt 463 (521)
+++|++ |+++.++.++|+|+|+.+|||||||+|+++|+||+|||++|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhcC
Q 009950 464 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAACK 521 (521)
Q Consensus 464 ~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 521 (521)
+|||||||||||+||+|+||+++|+||||+|||||||||+++++|++|||+||++||+
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~ 216 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAE 216 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999985
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=9.5e-84 Score=610.55 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.2
Q ss_pred hhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeec
Q 009950 116 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 195 (521)
Q Consensus 116 ~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 195 (521)
|++||+|||+++.+|++|+||||||||||+||++||++|++|+|+|+|++|+|+|+++|+|||.++|+||||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccchhhhhHHhhhcCCCCCceeeEEEecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCC
Q 009950 196 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 275 (521)
Q Consensus 196 LGDlG~~GmgI~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp 275 (521)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||||++|++|++|+||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecCCCccHHHHHHHHc
Q 009950 276 KVLIQFEDFANHNAFELLAKYG 297 (521)
Q Consensus 276 ~~lIq~EDf~~~~af~iL~ryr 297 (521)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=2e-49 Score=386.54 Aligned_cols=186 Identities=39% Similarity=0.547 Sum_probs=171.4
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCC
Q 009950 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (521)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (521)
|||||+|++||+++|++..|++++|+||||+|||+||.|||++|... |++ +++||++|++|+++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~-----G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAA-----GAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHc-----CcC----cceEEEEeCCCccccccchhh
Confidence 79999999999999999999999999999999999999999999753 876 679999999999999997668
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 009950 387 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (521)
Q Consensus 387 ~~~k~~fa~~~--~~~-~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt 463 (521)
.++|++|+++. .+. .+|.+++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999998764 223 378899986 999999999 8899999999997 899999999999 89999999999
Q ss_pred CCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhhcC
Q 009950 464 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAACK 521 (521)
Q Consensus 464 ~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 521 (521)
|..||+|| +++.|+|+||+|||||||||+++++|++|||+||++||+
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~ 189 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAE 189 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHH
Confidence 55599998 689999999999999999999999999999999999985
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.90 E-value=1.9e-08 Score=84.37 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 689999999999999999999999999999999999999999764 2 257999988
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
|+||++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999888888 445556899999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.78 E-value=0.00076 Score=72.86 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=106.1
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHHH---------------------HHHHc-------CCCcee
Q 009950 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVF 303 (521)
Q Consensus 252 R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~i---------------------L~ryr-------~~~~~F 303 (521)
..+-++|...+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 345678888777665 345566655 5554444333 23453 269999
Q ss_pred c----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEe
Q 009950 304 N----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (521)
Q Consensus 304 n----------DDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD 373 (521)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 8 6678898777666653 346678999999999999999999888643 52 588888
Q ss_pred cCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 374 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 374 s~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
.+- .|. +... ...-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 243 ~dp----~ra--~~A~-----~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VDP----ICA--LQAA-----MDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CCc----hhh--HHHH-----hcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 642 111 1111 111112468888886 99999988877789999999885 344666555544
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.44 E-value=0.00054 Score=73.25 Aligned_cols=121 Identities=25% Similarity=0.372 Sum_probs=83.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
.+..+|+.+++-.|.+..| ++.+.+++|+|+|..|..+++.+... |+ .+++++|+.. .| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCCH----HH---HH
Confidence 5666777788766766655 48899999999999999999888652 54 5789888742 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCc-EEEEcCCCC
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPT 449 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIFaLSNPt 449 (521)
...+.+....-+..++.+++.. .|++|-+++.+ ..+++++++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111112467788876 99999987544 478999999875432356 889999995
No 17
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.43 E-value=0.0016 Score=64.32 Aligned_cols=133 Identities=21% Similarity=0.253 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+-+.|++|-|+.. + ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999764 53 578899999988876 4 3332
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 009950 390 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 460 (521)
Q Consensus 390 -k~~fa~~~~~~~~-------L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~ 460 (521)
...+.++...... =.+.+-.++.||||=++. .+.+|++..+.+ .-++|..-+| |++ + .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCC-H--HHHHHH
Confidence 2222221111100 013344568999998777 569999999998 4789998888 874 2 466666
Q ss_pred cccCC
Q 009950 461 TWSKG 465 (521)
Q Consensus 461 ~wt~G 465 (521)
+ ..|
T Consensus 140 ~-~~G 143 (217)
T cd05211 140 H-ERG 143 (217)
T ss_pred H-HCC
Confidence 5 356
No 18
>PLN02477 glutamate dehydrogenase
Probab=97.39 E-value=0.0079 Score=64.89 Aligned_cols=186 Identities=22% Similarity=0.230 Sum_probs=127.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccH--HHHHHHHcC----CCcee----------ccCCCchHHHHHH
Q 009950 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT----THLVF----------NDDIQGTASVVLA 316 (521)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr~----~~~~F----------nDDiQGTaaV~LA 316 (521)
.+..|-..+...|+.++.+.-||..=|-=+|+...-. --+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 4556778899999999999999865555567654321 124567653 11111 2333458888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEecCCccccCCccCCchhch-hhc
Q 009950 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 394 (521)
Q Consensus 317 gll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvDs~GLi~~~R~~~l~~~k~-~fa 394 (521)
++-.+++..|.+|++.||+|.|.|..|.+.|++|.+. |. +|+ +.|++|-|+.... |+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~G--LD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNENG--LDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCCC--CCHHHHHHHH
Confidence 8889999999999999999999999999999998663 53 566 8999999998753 442211 111
Q ss_pred cccC------C--CCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 009950 395 HEHE------P--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (521)
Q Consensus 395 ~~~~------~--~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~~ 461 (521)
+... . .-+-.+.+. .+.||||=+.. ++.+|++.+..+ +-.||.--+| |+ .+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 1100 0 012233343 48999997664 679999999987 6889999999 65 344 455555
No 19
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.35 E-value=0.0083 Score=65.37 Aligned_cols=189 Identities=16% Similarity=0.155 Sum_probs=129.8
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccH--HHHHHHHcCC---C-------cee----ccCCCchHHHHHH
Q 009950 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGTT---H-------LVF----NDDIQGTASVVLA 316 (521)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr~~---~-------~~F----nDDiQGTaaV~LA 316 (521)
.+..|-..|...|+.++.+.+||..=|-=+|++..-. --+.+.|+.- . |+- .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 4556888899999999999999977777777764221 2246777631 1 211 1334467777788
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-ecCCccccCCccCCchh-----c
Q 009950 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----K 390 (521)
Q Consensus 317 gll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv-Ds~GLi~~~R~~~l~~~-----k 390 (521)
++..+++..|.+|++.||+|.|-|..|...|++|.+. |. +++.+ |++|-|+...+ |+.. |
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~-----Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQL-----GA-------KVVTCSDSSGYVYDEEG--IDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCceEECCCC--CCHHHHHHHH
Confidence 8888999999999999999999999999999999643 53 45555 99999998753 4322 1
Q ss_pred h-------hhccc-cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 009950 391 K-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (521)
Q Consensus 391 ~-------~fa~~-~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~~ 461 (521)
. .|... ....-+- +.+-.++.||||=+.. .+.+|++-...+-. +.-.||.=-+| |+ -+| +++++.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 0001122 2244567999997776 67999999999843 35689999998 76 244 445554
No 20
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.25 E-value=0.0016 Score=67.01 Aligned_cols=136 Identities=23% Similarity=0.356 Sum_probs=86.9
Q ss_pred ccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc
Q 009950 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (521)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~ 366 (521)
.+|+++=++.+.+.-+. .+-.+|+.+++-.|.+..|. +.+.+|+|+|+|..|..+++.+... | .
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g------~ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----G------V 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----C------C
Confidence 46677767776654333 34456666666666665555 8899999999999999998888652 4 2
Q ss_pred CcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCC--CCcEEEE
Q 009950 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 444 (521)
Q Consensus 367 ~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFa 444 (521)
++|+++|+. .+| .....+.|-.......++.++++. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999873 222 111112221111112357788876 8999999887654 67666654322 2347788
Q ss_pred cCCCC
Q 009950 445 LSNPT 449 (521)
Q Consensus 445 LSNPt 449 (521)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 21
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.19 E-value=0.0014 Score=70.24 Aligned_cols=120 Identities=27% Similarity=0.408 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
+..+|+.+|+--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++|+++|+.. .| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH---HHH
Confidence 355676666655544444 6888999999999999999988854 253 6799888742 22 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcCC--CCcEEEEcCCCC
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN--EKPLILALSNPT 449 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~--erPIIFaLSNPt 449 (521)
..+.|.....+..++.+++.. +|++|-+++.+ ..+++++++.+.+.. ...+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 111221111112456777775 89999988755 478999999975322 345888999995
No 22
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.14 E-value=0.025 Score=61.72 Aligned_cols=189 Identities=15% Similarity=0.107 Sum_probs=129.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHH---HHHHHcC----CCceec----------cCCCchHHHHH
Q 009950 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFN----------DDIQGTASVVL 315 (521)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---iL~ryr~----~~~~Fn----------DDiQGTaaV~L 315 (521)
.+..|-..|.-.||..+.+..||+.=|-=.|+.. ++.. +++.|+. ...++. +--..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4556788899999999998889987777777774 3322 4566653 222321 11223888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc-
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA- 394 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa- 394 (521)
.++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .++..+..+.
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999999664 64 4577889999998864 3544331111
Q ss_pred --------------cccCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 009950 395 --------------HEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 457 (521)
Q Consensus 395 --------------~~~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe 457 (521)
...+.. -+-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 010010 01122 22467999997776 57999999999953 34779999998 543 33 44
Q ss_pred HHhc
Q 009950 458 EAYT 461 (521)
Q Consensus 458 ~A~~ 461 (521)
+++.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 23
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.14 E-value=0.0073 Score=65.19 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=94.1
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 009950 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (521)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (521)
.+|+|+ |...||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+... |. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~~-----Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-----GA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------E
Confidence 788885 677899998887776 4667789999999999999999999877543 53 4
Q ss_pred EEEEecCCccccCCccCCchhchhhcccc-CCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009950 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (521)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (521)
++++|.+ ..| ..+|+.. -...++.++++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~~R--------~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----PIC--------ALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----hhh--------HHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 122 2233221 111246788875 89999999888889998888886 4567766777
Q ss_pred CCCCCCCCHHHHhc
Q 009950 448 PTSQSECTAEEAYT 461 (521)
Q Consensus 448 Pt~~~Ectpe~A~~ 461 (521)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 64 7888887654
No 24
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.07 E-value=0.0045 Score=63.35 Aligned_cols=138 Identities=19% Similarity=0.253 Sum_probs=92.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
..+.+++=.++.-+++..+..|.+.+++|+|+|.+|.++|+.+... |. +++++|++. .+ +.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~~---~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----AD---LA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----HH---HH
Confidence 4555666667778888888899999999999999999999999653 52 588888742 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcE
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 467 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~a 467 (521)
..+ .+....-...+|.+.+++ .|++|=+. +.+.++++.++.|. +..+|+=+|..- -++.++.|.+ -.-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 110 000011122467788876 99999755 34588999998885 467888776522 5666766554 34477
Q ss_pred EEecCCC
Q 009950 468 IFASGSP 474 (521)
Q Consensus 468 ifAsGSP 474 (521)
+.+-|-|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 8888865
No 25
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.04 E-value=0.00051 Score=62.33 Aligned_cols=102 Identities=25% Similarity=0.430 Sum_probs=68.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCCH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 403 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~L 403 (521)
.+|++.|++|+|||.+|-+++..|... |. ++|++++|. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 378999999999999999998888763 54 789999973 332 22222333110 1123566
Q ss_pred HHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009950 404 LDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPTS 450 (521)
Q Consensus 404 ~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (521)
.+.++. .|++|-+++.+ -.++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 677776 99999998766 37899888764311 249999999963
No 26
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.04 E-value=0.018 Score=62.78 Aligned_cols=181 Identities=16% Similarity=0.099 Sum_probs=125.4
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCcc--HHHHHHHHcC---C-Ccee----------ccCCCchHHHHHH
Q 009950 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGT---T-HLVF----------NDDIQGTASVVLA 316 (521)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~iL~ryr~---~-~~~F----------nDDiQGTaaV~LA 316 (521)
.+-.|...|.-.||..+.+.+||+.-|--+|++..- ---+.+.|+. . .-++ .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 455677889999999999999998888888887532 2235667753 1 1233 3334568888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc
Q 009950 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (521)
Q Consensus 317 gll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~ 396 (521)
++-.+++..|.+|+++||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .++..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999999764 53 3355699999998764 355543322111
Q ss_pred c-----C---------C--CCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 009950 397 H-----E---------P--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (521)
Q Consensus 397 ~-----~---------~--~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (521)
. . . .-+-.+ +-.++.||||=+.. .+.+|++.++.+... -.-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~-g~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVAN-GVIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhc-CCeEEECCCCCCC
Confidence 0 0 0 001112 11256899997666 579999999999521 0137888888 54
No 27
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.00 E-value=0.005 Score=58.71 Aligned_cols=89 Identities=21% Similarity=0.352 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc
Q 009950 317 GVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (521)
Q Consensus 317 gll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~ 395 (521)
+.+-.++-...+|++.+++++|+|. .|..+|+.|... |. ++++++++
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~-----g~-------~V~v~~r~-------------------- 77 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNR-----NA-------TVTVCHSK-------------------- 77 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhC-----CC-------EEEEEECC--------------------
Confidence 3344455556789999999999998 599899888652 42 58888864
Q ss_pred ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 396 EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 396 ~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
..+|.+.++. +|++|.+++.+..|++++++ +.-+|+=++.|-
T Consensus 78 ----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 ----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred ----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 1357888887 99999999988899999764 356899999986
No 28
>PLN02494 adenosylhomocysteinase
Probab=96.99 E-value=0.0082 Score=65.90 Aligned_cols=130 Identities=16% Similarity=0.217 Sum_probs=94.1
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 009950 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (521)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (521)
.+|+|| |...||+--++-|++ |.++..+...+++|+|.|..|.++|+.+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 557899888888887 567778999999999999999999999853 253 5
Q ss_pred EEEEecCCccccCCccCCchhchhhccc-cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009950 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (521)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (521)
++++|.+.. | ...|.. .-...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.
T Consensus 280 VIV~e~dp~----r--------~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI----C--------ALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch----h--------hHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 888876421 1 011111 0011368888876 99999877777788999999996 6678888888
Q ss_pred CCCCCCCCHHHHhcc
Q 009950 448 PTSQSECTAEEAYTW 462 (521)
Q Consensus 448 Pt~~~Ectpe~A~~w 462 (521)
+. .|+.-++..++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 65 77777655544
No 29
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.99 E-value=0.01 Score=63.99 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=88.8
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 009950 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (521)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (521)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|+|..|.++|..+... |. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGM-----GA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-----cC-------E
Confidence 788887 677899977776655 5567789999999999999999999977542 53 5
Q ss_pred EEEEecCCccccCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009950 369 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (521)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (521)
++++|.+- .|. ..|+ ..-...++.|+++. .|++|-+++..++++.+.+..|. +.-||.-.+.
T Consensus 221 ViV~d~dp----~r~--------~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IRA--------LEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hhH--------HHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88888642 111 1111 11112357888875 89999888877788888888885 4567776776
Q ss_pred CCCCCCCCHHHH
Q 009950 448 PTSQSECTAEEA 459 (521)
Q Consensus 448 Pt~~~Ectpe~A 459 (521)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 64 55555443
No 30
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.83 E-value=0.004 Score=67.23 Aligned_cols=134 Identities=24% Similarity=0.381 Sum_probs=91.7
Q ss_pred CccHHHHHHHHcCC--CceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 009950 286 NHNAFELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 363 (521)
Q Consensus 286 ~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~e 363 (521)
-..||..=+|.|.+ | -.|-.+|.-|++--|-++.|. |++.+++|+|||..|-.+|+.|... |+
T Consensus 138 FqkAi~~gKrvRseT~I------~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~--- 202 (414)
T COG0373 138 FQKAISVGKRVRSETGI------GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV--- 202 (414)
T ss_pred HHHHHHHHHHhhcccCC------CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC---
Confidence 35666666777752 3 124445666666666666655 9999999999999999999988764 54
Q ss_pred hhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHHHHhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCC
Q 009950 364 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNE 438 (521)
Q Consensus 364 eA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~e 438 (521)
++|+++.+ |..|.. .+|+. .-....|.+.+.. .||+|-.++. .-+++.+.++.-.+..+
T Consensus 203 ---~~i~IaNR----T~erA~-------~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~ 266 (414)
T COG0373 203 ---KKITIANR----TLERAE-------ELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRK 266 (414)
T ss_pred ---CEEEEEcC----CHHHHH-------HHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhccc
Confidence 78998877 333322 23322 1223567778877 9998866544 45889999987654333
Q ss_pred CcEEEEcCCCCC
Q 009950 439 KPLILALSNPTS 450 (521)
Q Consensus 439 rPIIFaLSNPt~ 450 (521)
+=+||=++||-.
T Consensus 267 ~~livDiavPRd 278 (414)
T COG0373 267 RLLIVDIAVPRD 278 (414)
T ss_pred CeEEEEecCCCC
Confidence 349999999973
No 31
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.83 E-value=0.092 Score=57.58 Aligned_cols=188 Identities=18% Similarity=0.191 Sum_probs=130.1
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHH---HHHHHcC---CC-ceec----------cCCCchHHHHH
Q 009950 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---TH-LVFN----------DDIQGTASVVL 315 (521)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---iL~ryr~---~~-~~Fn----------DDiQGTaaV~L 315 (521)
.+..|-..|...||..+.+..||+.-|-=.|++. +..+ +.+.|+. .. .|+- +--.-||-=+.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556678899999999999999999999999884 3332 3555542 11 2221 11224887788
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEecCCccccCCccCCchhch---
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 391 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvDs~GLi~~~R~~~l~~~k~--- 391 (521)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .++..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88889999999999999999999999999999999763 53 456 999999999875 3544332
Q ss_pred ------------hhccccCCCC--CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCH
Q 009950 392 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTA 456 (521)
Q Consensus 392 ------------~fa~~~~~~~--~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectp 456 (521)
.|+......+ +-.+ +-.++.|||+=+.. .+.+|++-++.+-+ +.-.+|.=-+| |++ +| +
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t-~e--A 361 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT-IE--A 361 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC-HH--H
Confidence 1211000000 1111 22368999998877 56999999998843 34668888888 764 23 4
Q ss_pred HHHhc
Q 009950 457 EEAYT 461 (521)
Q Consensus 457 e~A~~ 461 (521)
++.+.
T Consensus 362 ~~~L~ 366 (454)
T PTZ00079 362 THLFK 366 (454)
T ss_pred HHHHH
Confidence 45554
No 32
>PLN00203 glutamyl-tRNA reductase
Probab=96.71 E-value=0.0054 Score=67.94 Aligned_cols=121 Identities=23% Similarity=0.370 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHHHHHhCC-CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~-~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
|--+|+-+|+=-|.+..|. +|.+.+|+|+|||..|..+++.+.. .|. ++|+++++. .+| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 4445666666666677664 6999999999999999999887754 253 679999874 222 22
Q ss_pred hhchhhcc---ccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcCC---CCc-EEEEcCCCC
Q 009950 388 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPT 449 (521)
Q Consensus 388 ~~k~~fa~---~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~---erP-IIFaLSNPt 449 (521)
.....|-. ...+..++.++++. +|++|.+++.+ .+|++++++.|-+.. .+| +|+=||.|-
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 22222210 01123567788876 99999886544 489999999984321 244 566799996
No 33
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.65 E-value=0.015 Score=59.77 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhch
Q 009950 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 391 (521)
Q Consensus 312 aV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~ 391 (521)
+++-+++..|++..+.++...|++|+|+|.+|..++..+... | -+++++|++- .+ .
T Consensus 133 ~~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~-----G-------a~V~v~~r~~----~~--------~ 188 (296)
T PRK08306 133 PTAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKAL-----G-------ANVTVGARKS----AH--------L 188 (296)
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECCH----HH--------H
Confidence 333445667778888899999999999999999999888642 5 2689898861 11 1
Q ss_pred hhccc----cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC-c
Q 009950 392 PWAHE----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-R 466 (521)
Q Consensus 392 ~fa~~----~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G-~ 466 (521)
.+++. .-...+|.+.++. .|++|-++. ...+++++++.|. +..+|+=++... -.|..+.|.+ .| +
T Consensus 189 ~~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~ 258 (296)
T PRK08306 189 ARITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIK 258 (296)
T ss_pred HHHHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeE
Confidence 11111 0112467788876 999998754 5678999999986 567777665433 3355544433 34 4
Q ss_pred EEEecCCC
Q 009950 467 AIFASGSP 474 (521)
Q Consensus 467 aifAsGSP 474 (521)
++.++|-|
T Consensus 259 ~~~~~~lp 266 (296)
T PRK08306 259 ALLAPGLP 266 (296)
T ss_pred EEEECCCC
Confidence 55567754
No 34
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.60 E-value=0.019 Score=57.11 Aligned_cols=132 Identities=25% Similarity=0.299 Sum_probs=93.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4577777888888899999999999999999999999999998663 53 33559999999998753 43
Q ss_pred hhch-hhccccCC------C--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 009950 388 HFKK-PWAHEHEP------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 457 (521)
Q Consensus 388 ~~k~-~fa~~~~~------~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe 457 (521)
.... .+.+.... . -+-.+ +-..+.||||=++. ++..|++.+..+ .-++|.--+| |++ +| ++
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a~-~~~i~~~~~~~l----~a~~I~egAN~~~t-~~--a~ 145 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAAL-ENQITADNADRI----KAKIIVEAANGPTT-PE--AD 145 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecCc-cCccCHHHHhhc----eeeEEEeCCCCCCC-HH--HH
Confidence 2211 11111000 0 12233 33458999998884 679999999998 4889999999 553 33 44
Q ss_pred HHhc
Q 009950 458 EAYT 461 (521)
Q Consensus 458 ~A~~ 461 (521)
+.+.
T Consensus 146 ~~L~ 149 (227)
T cd01076 146 EILH 149 (227)
T ss_pred HHHH
Confidence 5544
No 35
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.58 E-value=0.04 Score=56.12 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvDs~GLi~~~R~~~l~ 387 (521)
-||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC--CCC
Confidence 466667777888888889999999999999999999999999763 53 455 999999999875 343
Q ss_pred hhch---------------hhccccCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 009950 388 HFKK---------------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (521)
Q Consensus 388 ~~k~---------------~fa~~~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (521)
..+. .|....+.. -+-.|.. .++.||||=+.. .+.+|++-+..+.. +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 2211 111000000 1222322 457999997765 67999999999843 35789999999 76
Q ss_pred CCCCCCHHHHhc
Q 009950 450 SQSECTAEEAYT 461 (521)
Q Consensus 450 ~~~Ectpe~A~~ 461 (521)
+ + .+++.+.
T Consensus 159 t-~--~a~~~L~ 167 (254)
T cd05313 159 T-A--EAIEVFR 167 (254)
T ss_pred C-H--HHHHHHH
Confidence 3 2 2445554
No 36
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.50 E-value=0.028 Score=54.60 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHHHHHh--CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCC
Q 009950 309 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~--g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (521)
.||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. | -+++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35555666777777775 8899999999999999999999988763 5 3688888651 113
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhcccCC
Q 009950 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYTWSKG 465 (521)
Q Consensus 387 ~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~~wt~G 465 (521)
..++..|.. ... +..+... .+.|+++=++. ++.+|++.++.|. -++|..-+| |++. ..+++.++ ..|
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~----~~~v~~~AN~~~~~--~~~~~~L~-~~G 132 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQLK----AKAIAGAANNQLAD--PRHGQMLH-ERG 132 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHcC----CCEEEECCcCccCC--HhHHHHHH-HCC
Confidence 333333311 111 2233333 36999996555 6799999999994 679999988 6632 34555555 345
Q ss_pred c
Q 009950 466 R 466 (521)
Q Consensus 466 ~ 466 (521)
-
T Consensus 133 i 133 (200)
T cd01075 133 I 133 (200)
T ss_pred C
Confidence 3
No 37
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.48 E-value=0.017 Score=61.01 Aligned_cols=114 Identities=19% Similarity=0.299 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
|+++..+++--|.+..|..|++.+++|.|| |+.|..+|++|... .|. ++++++++. ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888888889999999999999999999 89999999999652 232 578888864 112 333
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCC--CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEKPLILALSNPTS 450 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~--Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (521)
.+.++.. ....+|.+++.. +|++|=+++.+.. ++++.++ +.-+|+=+|.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~------~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC------CCeEEEEecCCCC
Confidence 3333321 223468888886 9999988776432 6777662 3345566899963
No 38
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.38 E-value=0.07 Score=58.79 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=85.2
Q ss_pred CCceeccCCCchHHHH-------HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEE
Q 009950 299 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (521)
Q Consensus 299 ~~~~FnDDiQGTaaV~-------LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~l 371 (521)
.+||+|-+---|-++. ++.+=+.+|.++..|.+.+++|+|.|..|.++|+.+... |+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~-----Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGF-----GA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEE
Confidence 6899986655444433 444455577788999999999999999999999988642 53 5777
Q ss_pred EecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 372 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 372 vDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
+|++-. +. +.... ..-...++.++++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 776421 11 11000 11112468898886 99999988878899999999996 455666666553
No 39
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.24 E-value=0.014 Score=62.86 Aligned_cols=131 Identities=17% Similarity=0.311 Sum_probs=79.7
Q ss_pred cHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 009950 288 NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (521)
Q Consensus 288 ~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~ 367 (521)
.||+.=+|-|.+.-+ + .|.-+|+-+|+=-|.+.. .++++.|++|+|||.+|-.+|..|.. .|. +
T Consensus 143 ~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~ 206 (414)
T PRK13940 143 KVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------K 206 (414)
T ss_pred HHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------C
Confidence 455555555542211 1 223344445554444443 35889999999999999999888854 254 6
Q ss_pred cEEEEecCCccccCCccCCchhchhhc-cccCCCCCHHHHhcccCCcEEEEccCCCC-CCCHHHHHHHHcCCCCcE-EEE
Q 009950 368 KICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPL-ILA 444 (521)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~l~~~k~~fa-~~~~~~~~L~eav~~vkptvLIG~S~~~g-~Ft~evv~~Ma~~~erPI-IFa 444 (521)
+|+++++. .+|...+ ...|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|+ |+=
T Consensus 207 ~I~V~nRt----~~ra~~L---a~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT----IEKAQKI---TSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFID 271 (414)
T ss_pred EEEEECCC----HHHHHHH---HHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEE
Confidence 79998884 2222212 12221 111223567778876 999999887764 67877652 4565 467
Q ss_pred cCCCC
Q 009950 445 LSNPT 449 (521)
Q Consensus 445 LSNPt 449 (521)
||.|-
T Consensus 272 LavPR 276 (414)
T PRK13940 272 ISIPQ 276 (414)
T ss_pred eCCCC
Confidence 99996
No 40
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.015 Score=60.00 Aligned_cols=96 Identities=17% Similarity=0.334 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+-.-+|-+|++..++-.+.+|++.+++++|+|. .|..+|.+|... | ..+++|+++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc-----------
Confidence 445778889999999999999999999999988 999999999652 4 3577887641
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (521)
.+|.+.+++ +|++|...+.++.|++++++ +.-+|+=++.|
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 258888887 99999999999999999874 45677777664
No 41
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.23 E-value=0.026 Score=58.06 Aligned_cols=109 Identities=19% Similarity=0.300 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
..+-.|-.|++..++..+.+++.+++|++|+|- +|-.+|.+|... | | .+.+|+++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~-----g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNA-----N-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhC-----C-----C--EEEEEeCC------------
Confidence 446677799999999999999999999999997 999999998652 4 2 58888762
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc-CCCC---CCCCCCHHHHhc
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT---SQSECTAEEAYT 461 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt---~~~Ectpe~A~~ 461 (521)
..+|.+.++. +|++|-+++.++.|+.++++ +.-+|+=. .||. -.-++.+|++.+
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1246666775 99999999999999998874 45566655 3663 112566666644
No 42
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.14 E-value=0.071 Score=51.08 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=76.4
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 467777777776 5688999999999999999999999998653 5 357776653
Q ss_pred hhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 009950 388 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (521)
Q Consensus 388 ~~k~~fa~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~ 461 (521)
|.+.-=|. +.-+..++.|+++. +|++|-+++...+++.|.++.|. +.-|+.-..-= .-|+.-+...+
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh~--d~Eid~~~L~~ 123 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGHF--DVEIDVDALEA 123 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSSS--TTSBTHHHHHT
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCcC--ceeEeeccccc
Confidence 11111111 22223579999987 99999999988899999999996 55566544432 37887776544
No 43
>PLN00106 malate dehydrogenase
Probab=96.04 E-value=0.035 Score=58.13 Aligned_cols=142 Identities=23% Similarity=0.284 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa 394 (521)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|+. .++ ...+.|+|.+- ..+-.-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 344678888887665 69999999 9999999998864 244 35799999865 1111112322211 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHH
Q 009950 395 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAE 457 (521)
Q Consensus 395 ~~~--~~~~~L~eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~Ectpe 457 (521)
+-. ....++.+++++ .|+.|=+.+.+.. ..+++++.+.+++.+.||+.-|||.. ...+...
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~ 147 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAE 147 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence 211 133467889998 9998877665422 34678888999999999999999972 2224444
Q ss_pred HHhcccCC--cEEEecCC
Q 009950 458 EAYTWSKG--RAIFASGS 473 (521)
Q Consensus 458 ~A~~wt~G--~aifAsGS 473 (521)
.+++++.= .-+|++|.
T Consensus 148 ~~~~~s~~p~~~viG~~~ 165 (323)
T PLN00106 148 VLKKAGVYDPKKLFGVTT 165 (323)
T ss_pred HHHHcCCCCcceEEEEec
Confidence 55555421 45666664
No 44
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.00 E-value=0.013 Score=59.95 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch-hchhhc
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWA 394 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~-~k~~fa 394 (521)
.|++.+++..+..++.++++|+|||.||.+++..|... |+ ++|+++|+. ..|.+.+.+ .+..|.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 46777887666678889999999999999999888753 64 679999984 233222221 111111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEEccCCC
Q 009950 395 H-EHEPVNNLLDAVKVIKPTILIGSSGVG 422 (521)
Q Consensus 395 ~-~~~~~~~L~eav~~vkptvLIG~S~~~ 422 (521)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 1 01112455666665 99999987654
No 45
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.88 E-value=0.042 Score=52.16 Aligned_cols=114 Identities=23% Similarity=0.256 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
||+.+++.+..+++..|.++++.+++++|+ |..|..+++.+++. | .++++++++. ++ +..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~~----~~---~~~ 67 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRDL----ER---AQK 67 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH----HH---HHH
Confidence 677777788888887889999999999997 99999888888652 3 3688887651 11 111
Q ss_pred hchhhcc---------ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCC--cEEEEcCCCC
Q 009950 389 FKKPWAH---------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK--PLILALSNPT 449 (521)
Q Consensus 389 ~k~~fa~---------~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~er--PIIFaLSNPt 449 (521)
....+.. +.....++.+++++ .|++|-++..+ ..+...... ..+ .+++=++.|-
T Consensus 68 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~~g-~~~~~~~~~----~~~~~~vv~D~~~~~ 132 (194)
T cd01078 68 AADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGAAG-VELLEKLAW----APKPLAVAADVNAVP 132 (194)
T ss_pred HHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCCCC-ceechhhhc----ccCceeEEEEccCCC
Confidence 1111110 11122345677775 89999877644 443222211 123 3666666654
No 46
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.83 E-value=0.029 Score=50.51 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~ 395 (521)
.|+.+|++..+.++++.+++|+|+|..|..+++.+.+. | ..+++++|+. ..+ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999999888888888542 3 1578888874 111 2222222211
Q ss_pred c--cCCCCCHHHHhcccCCcEEEEccCCCCCC-CHHHHHHHHcCCCCcEEEEcC-CCC
Q 009950 396 E--HEPVNNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILALS-NPT 449 (521)
Q Consensus 396 ~--~~~~~~L~eav~~vkptvLIG~S~~~g~F-t~evv~~Ma~~~erPIIFaLS-NPt 449 (521)
. .....++.++++. +|++|-+...+ .. .+++........+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~-~~~~~~~~~~~~~~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVG-MKPGDELPLPPSLLKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCC-CCCCCCCCCCHHHcCCCCEEEEcCcCCC
Confidence 1 0123467777765 99999877543 32 111100001123567888775 454
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.73 E-value=0.035 Score=58.81 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=64.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc----ccCCCCCHH
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EHEPVNNLL 404 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~----~~~~~~~L~ 404 (521)
+...+++|+|+|.+|.++++.+... |. ++.++|++ ..| +......|.. ...+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999988653 52 48889874 111 1111112211 111124588
Q ss_pred HHhcccCCcEEEEccCC-----CCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009950 405 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 447 (521)
Q Consensus 405 eav~~vkptvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (521)
++++. .|++|.+... +.++|+++++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 9999988632 4468999999995 5688888874
No 48
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.62 E-value=0.021 Score=57.10 Aligned_cols=131 Identities=21% Similarity=0.335 Sum_probs=84.3
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh-ccccCCCCCHHHHhcccC
Q 009950 334 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKVIK 411 (521)
Q Consensus 334 iv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f-a~~~~~~~~L~eav~~vk 411 (521)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.....+.+...++ ...-....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~-- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD-- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--
Confidence 578999 99999999988653 41 113679999986411111111133222222 0011123568899988
Q ss_pred CcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecCCCC
Q 009950 412 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSPF 475 (521)
Q Consensus 412 ptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~aifAsGSPf 475 (521)
+|++|=+.+.++. .-+++.+.|.+++.+.+++-.|||. .....-+++++ ...-+|++|. .
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~-l 146 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT-L 146 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec-c
Confidence 9998866554322 3578899999999999999999995 56666677763 3455899986 5
Q ss_pred Ccc
Q 009950 476 DPF 478 (521)
Q Consensus 476 ~pv 478 (521)
++.
T Consensus 147 d~~ 149 (263)
T cd00650 147 DPI 149 (263)
T ss_pred hHH
Confidence 543
No 49
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.47 E-value=0.032 Score=56.78 Aligned_cols=104 Identities=19% Similarity=0.158 Sum_probs=64.6
Q ss_pred CceeccCCCchHHHHHHHHHHHHHHhCC--CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 300 HLVFNDDIQGTASVVLAGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 300 ~~~FnDDiQGTaaV~LAgll~Alk~~g~--~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
+.=+|-|. .|++.+++-.+. ++++.+++++|||.|+-+|+..|.+. |. ++|+++++.
T Consensus 100 l~G~NTD~--------~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-----G~------~~i~I~nRt-- 158 (282)
T TIGR01809 100 WKGDNTDW--------DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-----GV------TDITVINRN-- 158 (282)
T ss_pred EEEecCCH--------HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEEeCC--
Confidence 44456663 356777776663 68899999999999999988877653 64 689999873
Q ss_pred cccCCccCCchhchhhcccc--CCC---CCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 378 IVSSRKDSLQHFKKPWAHEH--EPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 378 i~~~R~~~l~~~k~~fa~~~--~~~---~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.+|.+.|.+ .|.... ... ..+.+++. ++|++|.++..+-.++.+.+.
T Consensus 159 --~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l~ 210 (282)
T TIGR01809 159 --PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDLF 210 (282)
T ss_pred --HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHhh
Confidence 233222321 111100 011 12334444 489999998877556655443
No 50
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.39 E-value=0.043 Score=56.29 Aligned_cols=125 Identities=14% Similarity=0.243 Sum_probs=78.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-C-CCCCHHHHhccc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E-PVNNLLDAVKVI 410 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~-~~~~L~eav~~v 410 (521)
||.|+|||.+|..+|..++.. |+ ..+|.++|++-=..++-..+|.+.. .+.... . ...+.. .+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-----g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~-~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-----GI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYS-DCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-----CC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHH-HhCC-
Confidence 899999999999999988653 54 3579999985222111111121111 111100 0 112333 4665
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEecCCC
Q 009950 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSP 474 (521)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifAsGSP 474 (521)
.|++|=+++.+.. +=+++.+.|.+++..-+|+-.|||. .+...-+++++. -+-||++|.-
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~---d~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV---DVITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH---HHHHHHHHHHhCcCHHHEeeccch
Confidence 9999988776521 1257788888999999999999996 466666666542 1458888865
No 51
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.33 E-value=0.071 Score=56.39 Aligned_cols=123 Identities=11% Similarity=0.165 Sum_probs=73.1
Q ss_pred ccHHHHHHHHcCCCceeccCCCchHHHHHH--HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh
Q 009950 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLA--GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (521)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LA--gll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~ee 364 (521)
..||..=+|-|.+. .| |.++|.++ ++..+ +.. .+|++.+++++|||..|--+|+.|... |.
T Consensus 136 ~~A~~~aKrVRteT-----~I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~-----g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKG-----GA-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQRQ-----GY---- 198 (338)
T ss_pred HHHHHHHHHHhhhc-----CC-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHHc-----CC----
Confidence 34555555666421 11 33444333 33333 333 569999999999999988887777653 64
Q ss_pred hcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHH-HHhc-ccCCcEEEEc----cCCCCCCCHHHHHHHHcCCC
Q 009950 365 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-DAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNE 438 (521)
Q Consensus 365 A~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~-eav~-~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~e 438 (521)
++|+++.+.-. + .+|.. +. +++. ..+.||+|-. +++.-.+|.+.++..- +
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~---~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP---D 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhcc---C
Confidence 67999888641 1 22221 10 1111 1358999964 3334467888766421 2
Q ss_pred CcEEEEcCCCCCC
Q 009950 439 KPLILALSNPTSQ 451 (521)
Q Consensus 439 rPIIFaLSNPt~~ 451 (521)
| ++|=||+|-.-
T Consensus 255 r-~~iDLAvPRdI 266 (338)
T PRK00676 255 R-IVFDFNVPRTF 266 (338)
T ss_pred c-EEEEecCCCCC
Confidence 3 99999999853
No 52
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.02 E-value=0.067 Score=53.87 Aligned_cols=131 Identities=22% Similarity=0.299 Sum_probs=89.9
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCC-cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc
Q 009950 305 DDIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (521)
Q Consensus 305 DDiQGTaaV~LAgll~Alk~~g~~-L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~ 383 (521)
|--+-||-=+..++-.+++..+.. |++.|++|-|.|..|...|+.|.+. |. +=+-+.|++|.|+...+
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~G 73 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDG 73 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTE
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCC
Confidence 344567878888889999997776 9999999999999999999999874 52 44667799999987542
Q ss_pred cCCchhchhhccccCCCCCH-----------HH--HhcccCCcEEEEccCCCCCCCHHHHH-HHHcCCCCcEEEEcCC-C
Q 009950 384 DSLQHFKKPWAHEHEPVNNL-----------LD--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN-P 448 (521)
Q Consensus 384 ~~l~~~k~~fa~~~~~~~~L-----------~e--av~~vkptvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIFaLSN-P 448 (521)
-+...-.+...+.......+ .+ .+=.++.||||=+ +.++.+|++.+. .+.+ .-+||.--+| |
T Consensus 74 ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~--~akiIvegAN~p 150 (244)
T PF00208_consen 74 LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIKS--GAKIIVEGANGP 150 (244)
T ss_dssp EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHT--T-SEEEESSSSS
T ss_pred chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHhc--cCcEEEeCcchh
Confidence 11111111111111101111 11 3445699999988 557899999998 7742 4789999999 5
Q ss_pred C
Q 009950 449 T 449 (521)
Q Consensus 449 t 449 (521)
+
T Consensus 151 ~ 151 (244)
T PF00208_consen 151 L 151 (244)
T ss_dssp B
T ss_pred c
Confidence 5
No 53
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.97 E-value=0.021 Score=52.53 Aligned_cols=104 Identities=22% Similarity=0.391 Sum_probs=66.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC-CccccCCccCCchhchhhccccCCCCCHHHHhccc
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~-GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v 410 (521)
||.|+|| |..|..+|-+|+.. ++ -+.|.|+|.+ ... ++..-+|.+..-+.-++..-..+..+++++
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~-~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKA-EGEALDLSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHH-HHHHHHHHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccc-eeeehhhhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988763 55 3569999986 211 111111222211111111111356777887
Q ss_pred CCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 411 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 411 kptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
+|++|=+.+.+ |- +-+++.+.+++++.+.+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 99999655543 21 2346777888999999999999996
No 54
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.96 E-value=0.23 Score=51.57 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
-.-+|-+|++..++-.+.+|+..+++++|-|. .|.-+|.+|.. .|. .+.+|+|+
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~a-------tVtv~hs~------------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AGC-------TVTVCHRF------------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------eEEEEECC-------------
Confidence 34678889999999999999999999999998 99999998864 242 47777764
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCC----CCCCCCHHHHhc
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPT----SQSECTAEEAYT 461 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt----~~~Ectpe~A~~ 461 (521)
.++|.+.+++ +|++|-..+.++.|+.++|+ +.-+|.=.. |+. -.--+.+|.+.+
T Consensus 193 -----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvGin~~~~gk~~GDvd~~~~~~ 251 (285)
T PRK10792 193 -----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVGINRLEDGKLVGDVEFETAAE 251 (285)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcccccccCCCcCCCcCHHHHHh
Confidence 1358888987 99999999999999999986 566776665 432 112355555544
No 55
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.94 E-value=0.052 Score=54.85 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=71.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc---------------c
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---------------E 396 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~---------------~ 396 (521)
.||.|+|+|..|.+||..++.. | .+++++|.+---...-.+.+......+.. .
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcC
Confidence 5899999999999999888653 4 36889986411000000000000011100 0
Q ss_pred cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCC
Q 009950 397 HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFD 476 (521)
Q Consensus 397 ~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~ 476 (521)
.....++.++++. .|++|=+-...-.+.+++++...+......|+ .||.+++ .+.++.+..+-..=|....||.
T Consensus 72 i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~vg~Hf~~ 145 (287)
T PRK08293 72 ITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL---LPSQFAEATGRPEKFLALHFAN 145 (287)
T ss_pred eEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC---CHHHHHhhcCCcccEEEEcCCC
Confidence 0113578888886 88888543322236777888877766655566 3565544 4444444332111133357888
Q ss_pred cce
Q 009950 477 PFE 479 (521)
Q Consensus 477 pv~ 479 (521)
|+.
T Consensus 146 p~~ 148 (287)
T PRK08293 146 EIW 148 (287)
T ss_pred CCC
Confidence 874
No 56
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.78 E-value=0.046 Score=45.70 Aligned_cols=94 Identities=13% Similarity=0.256 Sum_probs=62.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-ecCCccccCCccCCchhchhhccccCCC-CCHHHHhccc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 410 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv-Ds~GLi~~~R~~~l~~~k~~fa~~~~~~-~~L~eav~~v 410 (521)
||.|+|+|..|.++++.+... |. ...+|+++ +++ .+...+.++.|... -. .+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQ--ATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTE--EESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccc--cccCChHHhhcc-
Confidence 789999999999999988764 54 34677755 553 12233333333211 11 379999996
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (521)
+|++| ++..+ ..-+++++.+....+..+|.-++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99988 66655 4556788888666788999988886
No 57
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.75 E-value=0.22 Score=46.43 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhch
Q 009950 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 391 (521)
Q Consensus 312 aV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~ 391 (521)
-++..|++..++..|.+++.++++++|.+.. +.+-++..+.+ .|. .+.+||++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~ga-------tV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DGA-------TVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CCC-------EEEEeCCCC---------------
Confidence 4578889999999999999999999998754 44444444433 353 466777631
Q ss_pred hhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009950 392 PWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (521)
Q Consensus 392 ~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (521)
.+|.++++. +|++|-..+.++.|+.|+|+ +.-+|..
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vid 98 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVIN 98 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEE
Confidence 268889998 99999999999999999986 4456653
No 58
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.63 E-value=0.072 Score=55.31 Aligned_cols=127 Identities=14% Similarity=0.278 Sum_probs=80.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccC-CCCCHHHHhccc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVI 410 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~-~~~~L~eav~~v 410 (521)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+--..++-.-+|.+.. +|-+... ..++. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999998864 365 3679999974211111111132222 2211100 11344 45776
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecCCC
Q 009950 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 474 (521)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~aifAsGSP 474 (521)
.|++|=+.+.+.. +=+++++.|.+++...+|+-.|||. ++....+++++ .-+-+|++|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 9999876665321 1256788888999999999999995 55666677765 33447777754
Q ss_pred C
Q 009950 475 F 475 (521)
Q Consensus 475 f 475 (521)
-
T Consensus 150 L 150 (315)
T PRK00066 150 L 150 (315)
T ss_pred H
Confidence 3
No 59
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.63 E-value=0.12 Score=53.98 Aligned_cols=127 Identities=17% Similarity=0.286 Sum_probs=78.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCCHHHHh
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAV 407 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~L~eav 407 (521)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+... -....++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999988754 365 23999997532222111011111 111111 1112456 567
Q ss_pred cccCCcEEEEccCCCCC-------------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--Cc
Q 009950 408 KVIKPTILIGSSGVGRT-------------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GR 466 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~-------------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~ 466 (521)
++ +|++|=+.+.++. +-+++++.|.+++..-+++--|||. ......++++++ -.
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~---di~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL---DVMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHhcCCChh
Confidence 76 9999865554421 1347888888999888999999995 444555656553 24
Q ss_pred EEEecCCCC
Q 009950 467 AIFASGSPF 475 (521)
Q Consensus 467 aifAsGSPf 475 (521)
-+|++|.-.
T Consensus 148 rviGlgt~l 156 (321)
T PTZ00082 148 KVCGMAGVL 156 (321)
T ss_pred hEEEecCcc
Confidence 688888433
No 60
>PRK05086 malate dehydrogenase; Provisional
Probab=94.58 E-value=0.17 Score=52.56 Aligned_cols=105 Identities=23% Similarity=0.285 Sum_probs=67.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCCCCCHHHHhcc
Q 009950 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 409 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~eav~~ 409 (521)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+..-++.+. .....- .....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 38999999 99999999887542 122 256889997522 11110012211 000000 0012467788887
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 410 vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
.|++|=+.+.+.- ..++++++|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 9988866665321 5678999999999999999999997
No 61
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.52 E-value=0.2 Score=55.62 Aligned_cols=190 Identities=16% Similarity=0.214 Sum_probs=99.0
Q ss_pred EEEecCCCc----cccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCC---ccHHHHHHHHcCCC
Q 009950 228 ITVDVGTNN----EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN---HNAFELLAKYGTTH 300 (521)
Q Consensus 228 I~LDvGTnn----e~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~---~~af~iL~ryr~~~ 300 (521)
|.+-|..-. +.|.++-.++|+-|+-.. .+ .++++.++ .=.+|-+|.+-. ...+++|
T Consensus 68 iilkV~~P~~~e~~~l~~g~~li~~l~p~~~----~~----l~~~l~~~--~it~ia~e~vpr~sraq~~d~l------- 130 (509)
T PRK09424 68 IILKVNAPSDDEIALLREGATLVSFIWPAQN----PE----LLEKLAAR--GVTVLAMDAVPRISRAQSLDAL------- 130 (509)
T ss_pred EEEEeCCCCHHHHHhcCCCCEEEEEeCcccC----HH----HHHHHHHc--CCEEEEeecccccccCCCcccc-------
Confidence 555454332 245566777777777322 23 33333332 234577777642 2222222
Q ss_pred ceeccCCCchHHHHHHHHHHHHHHhC-----CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 301 LVFNDDIQGTASVVLAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 301 ~~FnDDiQGTaaV~LAgll~Alk~~g-----~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
--.-.|-|=-+|..|+-.-.--..| ......|++|+|||.+|++.+..... .| | +++.+|..
T Consensus 131 -ssma~IAGy~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~ 197 (509)
T PRK09424 131 -SSMANIAGYRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR 197 (509)
T ss_pred -cchhhhhHHHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC
Confidence 2233455555554443322111111 13458999999999999998776643 25 2 47778764
Q ss_pred CccccCCcc---CC------------chhchhhccccCCC------CCHHHHhcccCCcEEEEccCCCC-----CCCHHH
Q 009950 376 GLIVSSRKD---SL------------QHFKKPWAHEHEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEV 429 (521)
Q Consensus 376 GLi~~~R~~---~l------------~~~k~~fa~~~~~~------~~L~eav~~vkptvLIG~S~~~g-----~Ft~ev 429 (521)
- .|.+ ++ .+....|++...+. ..+.+.++ ++|++|.+++.+| +++++.
T Consensus 198 ~----~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~ 271 (509)
T PRK09424 198 P----EVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEM 271 (509)
T ss_pred H----HHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHH
Confidence 1 1110 00 00111233321110 11222233 4999999999866 679999
Q ss_pred HHHHHcCCCCcEEEEcCCCC-CCCCCCH
Q 009950 430 IEAMASFNEKPLILALSNPT-SQSECTA 456 (521)
Q Consensus 430 v~~Ma~~~erPIIFaLSNPt-~~~Ectp 456 (521)
++.|. +.-+|.=++-+. ...|++.
T Consensus 272 v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 272 VASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred HHhcC---CCCEEEEEccCCCCCccccc
Confidence 99997 455666677653 3345553
No 62
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.52 E-value=0.066 Score=57.91 Aligned_cols=125 Identities=14% Similarity=0.265 Sum_probs=76.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHH-hcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCC-----CCCHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~-~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~-----~~~L~ 404 (521)
.||+|+||||+ -..+++ ..+.+ ...+ ....|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 333444 43333 2333 247899999862 22211111111122221 111 25899
Q ss_pred HHhcccCCcEEEEccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009950 405 DAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTS 450 (521)
Q Consensus 405 eav~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (521)
+|+++ +|.+|=.-.+||. .=.|+++.|.++|...+|+=.|||.
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~- 147 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPA- 147 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHH-
Confidence 99988 8888765555541 1237888899999999999999997
Q ss_pred CCCCCHHHHhcccCCcEEEecC
Q 009950 451 QSECTAEEAYTWSKGRAIFASG 472 (521)
Q Consensus 451 ~~Ectpe~A~~wt~G~aifAsG 472 (521)
-+..+-+++++ ..-+|++|
T Consensus 148 --~ivt~a~~k~~-~~rviGlc 166 (419)
T cd05296 148 --GIVTEAVLRHT-GDRVIGLC 166 (419)
T ss_pred --HHHHHHHHHhc-cCCEEeeC
Confidence 35556667777 44466655
No 63
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.48 E-value=0.13 Score=53.23 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-+|++.=++-.+.+++..++|++|.| ..|.-+|.++... |. .+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~-----gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNA-----GA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-----CC-------EEEEEeCC--------------
Confidence 457788888889999999999999999999 9999999999652 53 35666442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
..+|.+.+++ +|++|...+.++.+++|+|+ +.-+|.=..
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk------~GavVIDvG 229 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK------KGAVVVDIG 229 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCcEEEEee
Confidence 1247788887 99999999999999999994 455665443
No 64
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.41 E-value=0.18 Score=52.41 Aligned_cols=128 Identities=20% Similarity=0.343 Sum_probs=79.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc---CCCCCHHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~---~~~~~L~ea 406 (521)
+..||.|+|||..|.++|.+++.. |+ ..+.|+|.+--...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-----~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-----NL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-----CC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 345999999999999999887653 54 24999997421111111012221 1111110 1124566 6
Q ss_pred hcccCCcEEEEccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEe
Q 009950 407 VKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (521)
Q Consensus 407 v~~vkptvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifA 470 (521)
+++ +|++|=+.+.+. -+-+++.+.|.+++..-+++-.|||. ......++++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 777 899886665542 22358999999999999888889996 444566666652 145888
Q ss_pred cCCCC
Q 009950 471 SGSPF 475 (521)
Q Consensus 471 sGSPf 475 (521)
+|+-.
T Consensus 146 ~gt~l 150 (319)
T PTZ00117 146 MAGVL 150 (319)
T ss_pred ecchH
Confidence 88543
No 65
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.35 E-value=0.099 Score=53.20 Aligned_cols=127 Identities=17% Similarity=0.329 Sum_probs=74.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc--cCCCCCHHHHhcc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKV 409 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~--~~~~~~L~eav~~ 409 (521)
.||.|+|||..|.++|..++.. |+ . .++++|..-=..++...++.+........ -....+. +++++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~-----~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL-----G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCC
Confidence 4899999999999999987652 54 2 79999983111111000011100000000 0112355 55776
Q ss_pred cCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC---cEEEecC
Q 009950 410 IKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG---RAIFASG 472 (521)
Q Consensus 410 vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G---~aifAsG 472 (521)
+|++|=+-+.+ | -.-+++++.|.+++...+++-.|||. .....-+++++ | +-+|++|
T Consensus 71 --aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~~~viG~g 144 (307)
T PRK06223 71 --SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPKNRVIGMA 144 (307)
T ss_pred --CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCcccEEEeC
Confidence 89988433322 2 12357778888899999888889996 34444555555 4 5699998
Q ss_pred CCCC
Q 009950 473 SPFD 476 (521)
Q Consensus 473 SPf~ 476 (521)
.-.+
T Consensus 145 t~ld 148 (307)
T PRK06223 145 GVLD 148 (307)
T ss_pred CCcH
Confidence 5443
No 66
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.34 E-value=0.061 Score=52.15 Aligned_cols=104 Identities=24% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhcc---
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~--- 395 (521)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+=+ ..+.- +++-..|..-+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d~v-e~sNL~Rq~l~~~~diG~~Ka~~~~~~l 84 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDDHV-DLSNLQRQILFTEEDVGRPKVEVAAQRL 84 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCCEE-cccchhhhhccChhhCCChHHHHHHHHH
Confidence 478999999999999999999999775 65 78999998722 11100 001111111110
Q ss_pred -c----------cCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 396 -E----------HEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 396 -~----------~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
. .... .++.+.++. .|++|.++.. .=++.++..++.....|.|++-+
T Consensus 85 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vi~~~d~--~~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 85 RELNSDIQVTALKERVTAENLELLINN--VDLVLDCTDN--FATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred HHhCCCCEEEEehhcCCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 0 0011 235555654 7888887642 33556677777777788888664
No 67
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.96 E-value=0.12 Score=56.12 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=76.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhc-CCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCC-----CCCHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~-G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~-----~~~L~ 404 (521)
.||+|+||||+ -...|+..+.+.. .++ ...|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999996 4444444443322 342 4789999964 44422122222222222 112 25899
Q ss_pred HHhcccCCcEEEEccCC--------------------------CCCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 009950 405 DAVKVIKPTILIGSSGV--------------------------GRTFT--------KEVIEAMASFNEKPLILALSNPTS 450 (521)
Q Consensus 405 eav~~vkptvLIG~S~~--------------------------~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 450 (521)
+|+++ +|.+|-.-.+ ||.|. .++++.|.++|+..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99998 8877644333 34332 38899999999999999999996
Q ss_pred CCCCCHHHHhcccCCcEEEecC
Q 009950 451 QSECTAEEAYTWSKGRAIFASG 472 (521)
Q Consensus 451 ~~Ectpe~A~~wt~G~aifAsG 472 (521)
-+.-+-+++++...-+|++|
T Consensus 147 --di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 --GEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred --HHHHHHHHHhCCCCcEEEEC
Confidence 34444555566344456554
No 68
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.94 E-value=0.31 Score=51.14 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=69.1
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh-ccccCCCCCHHHH
Q 009950 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDA 406 (521)
Q Consensus 329 L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f-a~~~~~~~~L~ea 406 (521)
++-.||+|.|| |..|..+|..|+. .++ ...+.|+|.+ .. .+-.-+|.+....+ .+...+..+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 34469999999 9999999987753 243 3679999982 21 11111232211110 0111111344788
Q ss_pred hcccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 407 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 407 v~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
+++ .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 988 9988855555322 4568899999999999999999997
No 69
>PRK08328 hypothetical protein; Provisional
Probab=93.54 E-value=0.041 Score=54.58 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=43.1
Q ss_pred HHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 009950 293 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (521)
Q Consensus 293 L~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv 372 (521)
++||..++..|..+. -.+|++.||+++|+|..|..||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578887776665421 2467889999999999999999999875 75 789999
Q ss_pred ecC
Q 009950 373 DSK 375 (521)
Q Consensus 373 Ds~ 375 (521)
|.+
T Consensus 58 D~D 60 (231)
T PRK08328 58 DEQ 60 (231)
T ss_pred cCC
Confidence 976
No 70
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.47 E-value=0.45 Score=47.05 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhC---------CCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccC
Q 009950 312 SVVLAGVVAALKLIG---------GTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 381 (521)
Q Consensus 312 aV~LAgll~Alk~~g---------~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~ 381 (521)
-+|-.|++.=|+-.+ .+|+.++++|+|-+. .|.-+|.||.. .| -.+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 445556666666554 489999999999875 56667777654 24 358899999988866
Q ss_pred CccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCC-CCHHHHH
Q 009950 382 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 431 (521)
Q Consensus 382 R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~-Ft~evv~ 431 (521)
+..++.+.+.+ ..+...+|.|.++. +|++|-..+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~---~~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHH---VTDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred ccccccccccc---ccchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 54322111100 00111248899998 9999999999998 8999997
No 71
>PRK08223 hypothetical protein; Validated
Probab=93.25 E-value=0.16 Score=52.69 Aligned_cols=127 Identities=14% Similarity=0.044 Sum_probs=80.1
Q ss_pred HHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcE
Q 009950 290 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (521)
Q Consensus 290 f~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i 369 (521)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6677888776665544322 578899999999999999999999886 75 789
Q ss_pred EEEecCCccccCCc-------cCCchhchhhccc----c----------CCC--CCHHHHhcccCCcEEEEccCCCCCCC
Q 009950 370 CLVDSKGLIVSSRK-------DSLQHFKKPWAHE----H----------EPV--NNLLDAVKVIKPTILIGSSGVGRTFT 426 (521)
Q Consensus 370 ~lvDs~GLi~~~R~-------~~l~~~k~~fa~~----~----------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft 426 (521)
.++|.+=+=.++-. +++-..|..-|.+ . ..+ .++.+.+++ .|++|=.+--...=+
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~~~~ 132 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFEFDA 132 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCcHHH
Confidence 99998733221110 1121122222211 0 111 356777776 898884332110125
Q ss_pred HHHHHHHHcCCCCcEEEEcCC
Q 009950 427 KEVIEAMASFNEKPLILALSN 447 (521)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLSN 447 (521)
.-+|...+.....|.|.+-+.
T Consensus 133 r~~ln~~c~~~~iP~V~~~~~ 153 (287)
T PRK08223 133 RRLVFAACQQRGIPALTAAPL 153 (287)
T ss_pred HHHHHHHHHHcCCCEEEEecc
Confidence 677888888888999997443
No 72
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.11 E-value=0.13 Score=54.04 Aligned_cols=99 Identities=24% Similarity=0.273 Sum_probs=63.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch-------------hchhh
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-------------FKKPW 393 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~-------------~k~~f 393 (521)
.+|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+ ..+ +|+. .|..-
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~v-e~s---NL~RQ~l~~~~d~~~g~~Ka~a 84 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDYV-EWS---NLQRQQLYTEEDAKQKKPKAIA 84 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCcc-ccc---ccCccccccHHHccCCccHHHH
Confidence 478899999999999999999999885 65 68999999742 211 1111 01000
Q ss_pred c----cc----------cCCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009950 394 A----HE----------HEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (521)
Q Consensus 394 a----~~----------~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (521)
| +. .... .++.+.+++ .|++|-++. ..-+..++..++.....|.|++
T Consensus 85 a~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D--~~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 85 AKEHLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATD--NFDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCC--CHHHHHHHHHHHHHcCCCEEEE
Confidence 0 00 0011 246666665 788887764 2335566667776677888875
No 73
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.08 E-value=0.38 Score=53.61 Aligned_cols=177 Identities=15% Similarity=0.212 Sum_probs=93.4
Q ss_pred eEEEecCCCc----cccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCce
Q 009950 227 PITVDVGTNN----EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLV 302 (521)
Q Consensus 227 PI~LDvGTnn----e~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~ 302 (521)
.|.+-|..-. +.|.++-.|+++-|+-.. .+ .++++.++ .-.+|-+|.+-. + +|- .+..+
T Consensus 66 diIlkV~~P~~~e~~~l~~g~tli~~l~p~~n----~~----ll~~l~~k--~it~ia~E~vpr-----i-sra-q~~d~ 128 (511)
T TIGR00561 66 DIILKVNAPSDAEIAELPAGKALVSFIWPAQN----PE----LMEKLAAK--NITVLAMDAVPR-----I-SRA-QKLDA 128 (511)
T ss_pred CEEEEeCCCCHHHHHhcCCCCEEEEEcCccCC----HH----HHHHHHHc--CCEEEEeecccc-----c-ccC-CccCc
Confidence 4555554332 455667778888776432 23 33333332 234577775531 0 111 12233
Q ss_pred ec--cCCCchHHHHHHHHHHHHHHhC-----CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 303 FN--DDIQGTASVVLAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 303 Fn--DDiQGTaaV~LAgll~Alk~~g-----~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
|. ..|-|-.+|..|+=.-.-...| ......|++|+|+|.+|+..+..+... |. ++.++|.+
T Consensus 129 lssma~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~ 196 (511)
T TIGR00561 129 LSSMANIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTR 196 (511)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 32 3455666665554332222222 234568999999999999988777542 52 37777876
Q ss_pred CccccCCccCCch------------hchhhccccCC------CCCHHHHhcccCCcEEEEccCCCC-----CCCHHHHHH
Q 009950 376 GLIVSSRKDSLQH------------FKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEA 432 (521)
Q Consensus 376 GLi~~~R~~~l~~------------~k~~fa~~~~~------~~~L~eav~~vkptvLIG~S~~~g-----~Ft~evv~~ 432 (521)
.-... +...+.. ...-||+...+ ..-+.+.++. .|++|++.-.+| ++|+|+++.
T Consensus 197 ~~rle-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~ 273 (511)
T TIGR00561 197 PEVKE-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDS 273 (511)
T ss_pred HHHHH-HHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhh
Confidence 53110 0000100 00112221100 0125566665 999999983333 589999999
Q ss_pred HHc
Q 009950 433 MAS 435 (521)
Q Consensus 433 Ma~ 435 (521)
|..
T Consensus 274 MKp 276 (511)
T TIGR00561 274 MKA 276 (511)
T ss_pred CCC
Confidence 973
No 74
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.07 E-value=0.32 Score=50.46 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcchH-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GAGsA-g~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
-.-+|-.|++.-++-.+.++++.+++++|.|.- |.-+|.+|... |. .+.+|+++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~-----~a-------tVt~~hs~------------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQA-----GA-------TVTICHSK------------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEecCC-------------
Confidence 346678889999999999999999999999998 99999998652 43 45565442
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
..+|.+.+++ +|++|-..+.++.|+.++++ +.-+|+=.+
T Consensus 192 -----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik------~gavVIDVG 230 (285)
T PRK14189 192 -----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK------PGATVIDVG 230 (285)
T ss_pred -----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEcc
Confidence 1357788887 99999999999999998886 344555443
No 75
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.03 E-value=0.21 Score=51.37 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.|++.+++..+.++++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4677888888888999999999999998888776654 364 689999984
No 76
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.03 E-value=0.58 Score=48.88 Aligned_cols=110 Identities=11% Similarity=0.176 Sum_probs=70.6
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (521)
|..|.+.+|.|+|.|..|..+|+.+... .|+ ++|..|+.. . ... ..++ ....+|.|
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~~~l~e 196 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYKDTIEE 196 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---cccCCHHH
Confidence 4568999999999999999999999543 243 688888642 1 101 1111 12358999
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc-cCCcE
Q 009950 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW-SKGRA 467 (521)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~w-t~G~a 467 (521)
+++. .|+++=..- ..++|+++.++.|. +..++.=+|.= .+..-++.+++ ..|+.
T Consensus 197 ll~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sRG---~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 197 AVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCARG---SLVDTKALLDALDNGLI 255 (332)
T ss_pred HHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCCC---cccCHHHHHHHHHhCCe
Confidence 9987 899885421 13567778888885 67788877753 34444433333 23543
No 77
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.03 E-value=0.71 Score=49.60 Aligned_cols=118 Identities=13% Similarity=0.150 Sum_probs=80.7
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 298 TTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
..|.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3455554322 2334457889999999899999999999999999999999998643 65 5788886
Q ss_pred CCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEc---c-----CCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 375 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS---S-----GVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 375 ~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~---S-----~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
.. .. . . ......+|.|+++. .|+++=. + ..-+.|+++.+..|. +..++.=.|
T Consensus 148 ~~------~~-~-~-------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (381)
T PRK00257 148 PR------QE-A-E-------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINAS 207 (381)
T ss_pred cc------cc-c-c-------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECC
Confidence 31 10 0 0 01123478888876 7877621 1 123688999998886 567877666
Q ss_pred C
Q 009950 447 N 447 (521)
Q Consensus 447 N 447 (521)
.
T Consensus 208 R 208 (381)
T PRK00257 208 R 208 (381)
T ss_pred C
Confidence 5
No 78
>PLN02928 oxidoreductase family protein
Probab=92.99 E-value=0.77 Score=48.43 Aligned_cols=164 Identities=18% Similarity=0.201 Sum_probs=96.9
Q ss_pred chHHHHHHHHHHHHHH----------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 009950 309 GTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (521)
Q Consensus 309 GTaaV~LAgll~Alk~----------------~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv 372 (521)
.+|--+++.+|+.+|- .+..|.++++.|+|.|..|..+|+.+... |+ +++.+
T Consensus 121 ~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~~ 188 (347)
T PLN02928 121 SCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLAT 188 (347)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEEE
Confidence 4555666666666653 24579999999999999999999998642 64 58888
Q ss_pred ecCCccccCCccCC--c-hhchhhccccCCCCCHHHHhcccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009950 373 DSKGLIVSSRKDSL--Q-HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILAL 445 (521)
Q Consensus 373 Ds~GLi~~~R~~~l--~-~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (521)
|+.. .......+ + ..-..+........+|.|+++. .|+++-.- ...+.|+++.++.|. +..++.=.
T Consensus 189 dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lINv 261 (347)
T PLN02928 189 RRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLVNI 261 (347)
T ss_pred CCCC--ChhhhhhhccccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEEEC
Confidence 8752 01000000 0 0000111111134689999998 99998652 224799999999996 56788777
Q ss_pred CCCCCCCCCCHHHHh-cc-cCCcEEEec-----CCCCCcceeCCEEeccccccceeechhhhH
Q 009950 446 SNPTSQSECTAEEAY-TW-SKGRAIFAS-----GSPFDPFEYNGKVFVPGQANNAYIFPGFGL 501 (521)
Q Consensus 446 SNPt~~~Ectpe~A~-~w-t~G~aifAs-----GSPf~pv~~~Gr~~~p~Q~NN~~iFPGigl 501 (521)
|. .++--|+|+ ++ ..|+.-.|. .-|.++ +. . -=+..|+.+-|=++-
T Consensus 262 aR----G~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~---~~-p--L~~~~nviiTPHia~ 314 (347)
T PLN02928 262 AR----GGLLDYDAVLAALESGHLGGLAIDVAWSEPFDP---DD-P--ILKHPNVIITPHVAG 314 (347)
T ss_pred CC----ccccCHHHHHHHHHcCCeeEEEEccCCCCCCCC---CC-h--hhcCCCEEECCcCCC
Confidence 65 444444443 22 346554332 112111 00 0 113468888887763
No 79
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.84 E-value=0.14 Score=49.89 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=63.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-C-CCCCHH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E-PVNNLL 404 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~-~~~~L~ 404 (521)
.+|++.||+|+|+|..|..||..|+.+ |+ +++.++|.+=+ ..+ +|+.+ ..+..+. . ....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~s---NL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EPS---NLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-ccc---ccccc-cCChhhCCCHHHHHHH
Confidence 468899999999999999999999875 65 68999999732 221 24432 1121111 0 112466
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE-EcCCCCCCCC
Q 009950 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSE 453 (521)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt~~~E 453 (521)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~ 126 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAM 126 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHH
Confidence 66777777754432 223466666555432 223444 5556654433
No 80
>PRK15076 alpha-galactosidase; Provisional
Probab=92.59 E-value=0.28 Score=53.29 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=75.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCcc---CC-chhchhhccc--cCCCCCHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL-QHFKKPWAHE--HEPVNNLLD 405 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~---~l-~~~k~~fa~~--~~~~~~L~e 405 (521)
.||.|+|||+.|... .++..+....++ +...++|+|.+- +|.+ .+ .......... -.-..++.+
T Consensus 2 ~KIaIIGaGsvg~~~--~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTK--NLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHH--HHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 589999999985444 333333211233 235799999752 2211 01 1100011000 011357889
Q ss_pred HhcccCCcEEEEccCCCCC-------------------------------------CCHHHHHHHHcCCCCcEEEEcCCC
Q 009950 406 AVKVIKPTILIGSSGVGRT-------------------------------------FTKEVIEAMASFNEKPLILALSNP 448 (521)
Q Consensus 406 av~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~Ma~~~erPIIFaLSNP 448 (521)
++++ +|++|=..+++|. .-.|+++.|.++|...+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 9887 8888755555421 124778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecC-CCCC
Q 009950 449 TSQSECTAEEAYTWSKGRAIFASG-SPFD 476 (521)
Q Consensus 449 t~~~Ectpe~A~~wt~G~aifAsG-SPf~ 476 (521)
. .+..+-++.+. ..-+|++| +|+.
T Consensus 150 ~---divt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 M---AMNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred H---HHHHHHHhcCC-CCCEEEECCCHHH
Confidence 6 33444444554 34588888 6644
No 81
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.57 E-value=0.19 Score=53.14 Aligned_cols=103 Identities=21% Similarity=0.240 Sum_probs=63.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCC--------ccCCchhchhhcc---
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--------KDSLQHFKKPWAH--- 395 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R--------~~~l~~~k~~fa~--- 395 (521)
.+|++.||+++|+|..|..||+.|+.+ |+ ++|.++|.+= |..+. .+++-..|..-+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHHH
Confidence 367889999999999999999999775 65 6899999862 11110 0001111111110
Q ss_pred -c-cC---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009950 396 -E-HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (521)
Q Consensus 396 -~-~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (521)
. .+ .. .++.+.++. .|++|-++... =+...+..++.....|+|++-
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEE
Confidence 0 00 11 134555654 78888776532 245567777777788888864
No 82
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.57 E-value=0.33 Score=50.23 Aligned_cols=94 Identities=19% Similarity=0.351 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+-.-+|-.|++.=++-.+.+|+..+++++|-+ .-|--+|.++... | ..+..++|+
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC------------
Confidence 34567788889999999999999999999999 7888888877542 3 346666653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
..+|.+.++. +|++|+.-+.++.+|+++|+ +.-+|.=.+
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk------~GavVIDVg 224 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK------PGATVIDVG 224 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC------CCcEEEEee
Confidence 1368999987 99999999989999999983 566776554
No 83
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.50 E-value=0.44 Score=49.80 Aligned_cols=94 Identities=15% Similarity=0.284 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-+|++.=++-.|.+|+.++|+|+|.| ..|..+|.+|... | ..+.+++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 456778888999999999999999999996 9999999999763 5 357777653 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NP 448 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NP 448 (521)
.++.|++++ +|++|=+.+.++.+++++++ +.-||.=+| |+
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvgin~ 234 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVGINR 234 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEecccc
Confidence 168999988 99999999989999998853 566887777 44
No 84
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.48 E-value=0.48 Score=49.23 Aligned_cols=84 Identities=17% Similarity=0.289 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
-.-+|-.|++..++-.+.+|+..++|++|.+. .|--+|.+|... |. .+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~-----~a-------tVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNR-----NA-------TVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHC-----CC-------EEEEEecc-------------
Confidence 34678889999999999999999999999998 899999988642 43 46677642
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257888887 99999999999999999886
No 85
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.47 E-value=0.28 Score=52.20 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=65.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhccc--
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~~-- 396 (521)
++|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=+ ..+.- +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999875 65 78999998732 22110 0111112111110
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009950 397 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (521)
Q Consensus 397 ---~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (521)
.+ .+ .++.+.+++ .|++|.++.. .=++-+|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 01 11 245566665 8888877753 235667777777778898886
No 86
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=92.37 E-value=0.27 Score=53.06 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=73.2
Q ss_pred eEEEeCcchHHHHHHH--HHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc------CCCCCHH
Q 009950 333 RFLFLGAGEAGTGIAE--LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLL 404 (521)
Q Consensus 333 riv~~GAGsAg~Gia~--ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~------~~~~~L~ 404 (521)
||.|+|||+.|.+.+- .|+.. ..+ +...++++|.+- ++.+.....-+.++... ....++.
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~----~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKT----PEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcC----CCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHH
Confidence 7999999999888653 22211 011 235799999752 22111111111111111 1135789
Q ss_pred HHhcccCCcEEEEccCCC---------------CCC---------------------CHHHHHHHHcCCCCcEEEEcCCC
Q 009950 405 DAVKVIKPTILIGSSGVG---------------RTF---------------------TKEVIEAMASFNEKPLILALSNP 448 (521)
Q Consensus 405 eav~~vkptvLIG~S~~~---------------g~F---------------------t~evv~~Ma~~~erPIIFaLSNP 448 (521)
+++++ +|++|=.-..+ |+| -.++.+.|.+++++.+++=.|||
T Consensus 70 eal~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNP 147 (423)
T cd05297 70 EALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANP 147 (423)
T ss_pred HHhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCCh
Confidence 99987 88877544322 111 12777778888899999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEecC-CC
Q 009950 449 TSQSECTAEEAYTWSKGRAIFASG-SP 474 (521)
Q Consensus 449 t~~~Ectpe~A~~wt~G~aifAsG-SP 474 (521)
. -+..+-+++.++ .-++.+| +|
T Consensus 148 v---~i~t~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 148 M---AELTWALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred H---HHHHHHHHHhCC-CCEEEECCcH
Confidence 6 333444556665 5678877 44
No 87
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.28 E-value=0.7 Score=48.29 Aligned_cols=123 Identities=24% Similarity=0.297 Sum_probs=78.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccC--CCCCHHHHhcc
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 409 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~--~~~~L~eav~~ 409 (521)
||.|+|| |..|..+|-.|+. .|+ ...+.|+|.+ + .++-.-+|.+.. .+.+-.. ...++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987754 365 3679999998 3 222211244332 1111111 11346777887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCC----HHHHhcccCC--cEEE
Q 009950 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECT----AEEAYTWSKG--RAIF 469 (521)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ect----pe~A~~wt~G--~aif 469 (521)
.|++|=+.+.+ |- .-+++++.+.+++...+|+-.|||. .+. .+-++++++= +-+|
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv---Dv~~~i~t~~~~~~s~~p~~rvi 143 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV---NSTVPIAAEVLKKAGVYDPKRLF 143 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch---hhHHHHHHHHHHHhcCCCHHHEE
Confidence 99888665553 31 2346777888899999999999996 332 4444555421 1377
Q ss_pred ecCC
Q 009950 470 ASGS 473 (521)
Q Consensus 470 AsGS 473 (521)
++|.
T Consensus 144 G~~~ 147 (310)
T cd01337 144 GVTT 147 (310)
T ss_pred eeec
Confidence 7775
No 88
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.28 E-value=0.62 Score=48.47 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-
Q 009950 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH- 395 (521)
Q Consensus 317 gll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~- 395 (521)
|.+++..+... ...+++|+|+|..|..+++.+... .++ ++++++++. ..| ...+...+.+
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999999998877543 243 678888773 222 2222222211
Q ss_pred ---ccCCCCCHHHHhcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 009950 396 ---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (521)
Q Consensus 396 ---~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~A 459 (521)
+.....++.++++. .|++|-++... ..|+.++++. .-.|.++...+ .+-|+.++-.
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHHH
Confidence 11224689999986 99999876432 4678887753 22455554322 2478887653
No 89
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=92.24 E-value=3.6 Score=44.93 Aligned_cols=187 Identities=24% Similarity=0.252 Sum_probs=125.4
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCc--cHHHHHHHHcCC-----Ccee----------ccCCCchHHHH
Q 009950 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYGTT-----HLVF----------NDDIQGTASVV 314 (521)
Q Consensus 252 R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~--~af~iL~ryr~~-----~~~F----------nDDiQGTaaV~ 314 (521)
..+-.|-.+|...|++++.+.-||+.-|-=+|+... .=--+.+.|+.- .+|| .+----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 356677889999999999999999999999999862 222246666531 2222 12222343323
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc
Q 009950 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (521)
Q Consensus 315 LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa 394 (521)
.-+.-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+-|++|.|+... .|+..+....
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 333347888889889999999999999999999998753 53 5577789999888863 3553332211
Q ss_pred cc----------cCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 009950 395 HE----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (521)
Q Consensus 395 ~~----------~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe~A~~ 461 (521)
++ .+.+.+ +.+-.+..||||=+.. .+.+|++-.+.+.+ + +|.=-+| |++ + .+++.+.
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~t-~--eA~~i~~ 325 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPTT-P--EADEILL 325 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCCC-H--HHHHHHH
Confidence 11 011112 3344467899997776 56999999988863 2 8888888 763 3 3445544
No 90
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.23 E-value=1.2 Score=47.88 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=74.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+..|=-+++.+++..|-.|..|.+.++.|+|.|..|..+|+.+... |+ ++..+|.. +.+ .
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~ 152 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--R 152 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--c
Confidence 3456667888998888889999999999999999999999999643 65 67788852 111 0
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEE---ccC-----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIG---SSG-----VGRTFTKEVIEAMASFNEKPLILALSN 447 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG---~S~-----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (521)
. ......+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|++=.|.
T Consensus 153 ~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR 208 (378)
T PRK15438 153 G-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR 208 (378)
T ss_pred c-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC
Confidence 0 00123468888776 787762 111 23578888888885 5667776554
No 91
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.21 E-value=0.47 Score=45.13 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999875 65 689999987
No 92
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.17 E-value=0.59 Score=48.91 Aligned_cols=121 Identities=21% Similarity=0.141 Sum_probs=75.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc--cccCCccCCchhchhhccccCCCCCHHHHhcc
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL--i~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~ 409 (521)
||.|.|| |..|..+|..|+. .|+-.|.-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987765 25522222336999998741 11111112333322332221111467788988
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 009950 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (521)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~~Ectpe~A~~wt 463 (521)
.|++|=+.+.+ |- +-+++++.|++++ +.-||+-.|||. .+..--+++++
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 140 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA---NTNALIALKNA 140 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 89888555543 31 2357888889994 999999999995 55555566654
No 93
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.17 E-value=1.2 Score=45.71 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
..||.|+|+|..|.++|..+... | .++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 4 357777764
No 94
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.16 E-value=0.3 Score=50.20 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.|++.+++..+..+++.+++++|||-|+-+|+-.|.+. |. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTH-----GV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 45677777555568889999999999999998877653 64 689999984
No 95
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.16 E-value=0.31 Score=49.22 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999998763 4 358888874
No 96
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.03 E-value=0.26 Score=50.36 Aligned_cols=170 Identities=17% Similarity=0.101 Sum_probs=84.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccC-C------------ccCCchhchhhccc-c
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-R------------KDSLQHFKKPWAHE-H 397 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~-R------------~~~l~~~k~~fa~~-~ 397 (521)
.+|.|+|+|..|.++|..++.. |. +++++|+.--.... + ...+++.....+.. .
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i 70 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARI 70 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCe
Confidence 3799999999999999998764 53 58888875210000 0 00000000000000 0
Q ss_pred CCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCc
Q 009950 398 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDP 477 (521)
Q Consensus 398 ~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~p 477 (521)
....++.++++. .|++|=+....-.+.+++++.+.+..+.-+|+. ||-. + ..+.+.-+...+.-.|....||.|
T Consensus 71 ~~~~~~~~a~~~--ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts--~-~~~~~la~~~~~~~~~~~~hp~~p 144 (308)
T PRK06129 71 RVTDSLADAVAD--ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS--A-LLASAFTEHLAGRERCLVAHPINP 144 (308)
T ss_pred EEECcHHHhhCC--CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC--C-CCHHHHHHhcCCcccEEEEecCCC
Confidence 112356666654 565554332221245555555554444445553 3321 1 123222222222223333344444
Q ss_pred ce------e-C-------------------CE------EeccccccceeechhhhHHHHHhCCCccCHHHHHhh
Q 009950 478 FE------Y-N-------------------GK------VFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (521)
Q Consensus 478 v~------~-~-------------------Gr------~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (521)
.. + . |+ ...||+..|-+.++.+.=++.++..--++.+-+..+
T Consensus 145 ~~~~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~ 218 (308)
T PRK06129 145 PYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAV 218 (308)
T ss_pred cccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 31 0 0 21 135788888888888888888777776765555443
No 97
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.87 E-value=0.36 Score=49.35 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=43.1
Q ss_pred CCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 299 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 299 ~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+..=+|-| -.|++.+++..+..++++++||+|||-+|.+||..+.. .|. ++|.++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34556666 45677888877778889999999999777777766654 364 679999874
No 98
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.78 E-value=0.55 Score=44.43 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCC
Q 009950 322 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 401 (521)
Q Consensus 322 lk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~ 401 (521)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- . - + .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~------~-~-~---~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK------P-E-E---GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH------H-H-H---HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC------h-h-h---hcccccceee
Confidence 34567889999999999999999999999643 54 6888888532 0 0 0 1111111235
Q ss_pred CHHHHhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc-c-cCCcEE
Q 009950 402 NLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAI 468 (521)
Q Consensus 402 ~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~-w-t~G~ai 468 (521)
+|.|.++. .|+++=.-. .-+.|+++.++.|. +..++.-.|. .++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999998 899885421 23799999999996 5667776665 4554444432 2 345544
No 99
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.77 E-value=0.18 Score=46.78 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=51.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhch--hhccc---cCC---CCCHH
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 404 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~--~fa~~---~~~---~~~L~ 404 (521)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .++.... .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999998763 4 46777766531111 1111111 11110 111 25899
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCC
Q 009950 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (521)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (521)
+++++ +|++| +.. +-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99987 88776 443 3356789999998744
No 100
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.75 E-value=0.51 Score=49.11 Aligned_cols=127 Identities=19% Similarity=0.295 Sum_probs=78.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~--~~~~~L~eav~~ 409 (521)
.||.|+|||..|..+|-.|+.. |+ ...+.|+|.+-=...+-.-+|.+.. +|.... ...++.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~-----~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK-----GL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 5999999999999999887642 55 4679999974211111111133222 332211 11235554 776
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecCC
Q 009950 410 IKPTILIGSSGVGRT--FT------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 473 (521)
Q Consensus 410 vkptvLIG~S~~~g~--Ft------------~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~aifAsGS 473 (521)
+|++|=+.+.+.. -| +++++.|.+++.+-+|+-.|||. .....-+++++ .-+-+|++|.
T Consensus 72 --adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 72 --SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV---DIMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH---HHHHHHHHHHhCCCHHHEEecCc
Confidence 8998755544211 23 36778888999999999999996 45666666653 1235888875
Q ss_pred CC
Q 009950 474 PF 475 (521)
Q Consensus 474 Pf 475 (521)
-.
T Consensus 147 ~L 148 (312)
T cd05293 147 NL 148 (312)
T ss_pred hH
Confidence 43
No 101
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.68 E-value=0.25 Score=52.02 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ .+|.++|.+-
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 568899999999999999999999875 65 6899999963
No 102
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.64 E-value=0.38 Score=49.73 Aligned_cols=125 Identities=19% Similarity=0.282 Sum_probs=75.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc---ccCCCCCHHHHhc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVK 408 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~---~~~~~~~L~eav~ 408 (521)
.||.|+|+|..|.++|-.++.. |+ + +++++|..--+.+++.-++.+ ...+.. .-....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 3899999999999999988653 54 2 499999832222211000110 001100 0011246766 66
Q ss_pred ccCCcEEEEccCCC---C-C------C----CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecC
Q 009950 409 VIKPTILIGSSGVG---R-T------F----TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 472 (521)
Q Consensus 409 ~vkptvLIG~S~~~---g-~------F----t~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~aifAsG 472 (521)
. .|++|=+.+.+ | . + =+++++.|.+++.+.+|+-.|||. .+...-+++++ .-+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 5 88887554432 1 1 2 245667788899999999999996 56666677764 223488888
Q ss_pred CC
Q 009950 473 SP 474 (521)
Q Consensus 473 SP 474 (521)
.=
T Consensus 144 ~~ 145 (305)
T TIGR01763 144 GV 145 (305)
T ss_pred cc
Confidence 53
No 103
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=91.57 E-value=1.1 Score=47.04 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=81.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcC-cEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHhc
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK-KICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~-~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav~ 408 (521)
||.|.|| |..|..+|..|+.. |+-..+ .+ .+.|+|.+.-. .++..-+|.+...++........+..++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~-~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKD-QPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCC-CccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999888652 441000 11 58999974321 111111243333233211111125677888
Q ss_pred ccCCcEEEEccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEec
Q 009950 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 471 (521)
Q Consensus 409 ~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~-~erPIIFaLSNPt~~~Ectpe~A~~wt~G--~aifAs 471 (521)
+ .|++|=+.+.+ |- +=+++++.|+++ ++.-||+-.|||. .++.--+++++.+ +-+|.|
T Consensus 75 ~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~ 149 (324)
T TIGR01758 75 D--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSA 149 (324)
T ss_pred C--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEE
Confidence 7 89988665554 21 124678888899 4999999999995 5666666666632 238888
Q ss_pred CCCCCc
Q 009950 472 GSPFDP 477 (521)
Q Consensus 472 GSPf~p 477 (521)
|+=.+.
T Consensus 150 gt~LDs 155 (324)
T TIGR01758 150 LTRLDH 155 (324)
T ss_pred eeehHH
Confidence 875553
No 104
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.41 E-value=0.46 Score=48.14 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=55.4
Q ss_pred HHHHHHHHHH-hCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh
Q 009950 315 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (521)
Q Consensus 315 LAgll~Alk~-~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f 393 (521)
-.|++++++. .+..+++.+++|+|||.+|-+++..+.. .|+ .+++++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 3456777764 5678999999999999999888888864 254 579999885 222 11112222
Q ss_pred cccc-CCC-CCHHHHhcccCCcEEEEccCCC
Q 009950 394 AHEH-EPV-NNLLDAVKVIKPTILIGSSGVG 422 (521)
Q Consensus 394 a~~~-~~~-~~L~eav~~vkptvLIG~S~~~ 422 (521)
.... -.. .++.+++.. .|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhcccc--CCEEEECCcCC
Confidence 1110 011 123455554 89999988754
No 105
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.20 E-value=0.87 Score=46.30 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5799999999999999998653 53 58888863
No 106
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.01 E-value=0.4 Score=43.07 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=31.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcc
Confidence 478999999999999999999886 65 7899999873
No 107
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.62 E-value=1.8 Score=45.53 Aligned_cols=110 Identities=23% Similarity=0.183 Sum_probs=73.7
Q ss_pred CceeccCC---CchHHHHHHHHHHHHH------------------HhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhc
Q 009950 300 HLVFNDDI---QGTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQT 358 (521)
Q Consensus 300 ~~~FnDDi---QGTaaV~LAgll~Alk------------------~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~ 358 (521)
+.|+|-.- +..|=-++|.+|+..| ..|..|.++++-|+|.|..|..+|+.+...
T Consensus 90 i~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af----- 164 (324)
T COG0111 90 ILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF----- 164 (324)
T ss_pred CEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----
Confidence 44444433 2334456777777777 567789999999999999999999998653
Q ss_pred CCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEcc----CCCCCCCHHHHHHHH
Q 009950 359 KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMA 434 (521)
Q Consensus 359 G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~Ma 434 (521)
|+ ++..+|+. ..+. .. -........+|.+.++. .|++.-.- ..-|.++++-+..|.
T Consensus 165 gm-------~v~~~d~~----~~~~--~~-----~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 165 GM-------KVIGYDPY----SPRE--RA-----GVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred CC-------eEEEECCC----Cchh--hh-----ccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 65 57888873 1111 00 00112234679999987 89988542 123789999999995
No 108
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.58 E-value=0.92 Score=47.09 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+-.-+|-+|++.=|+-.+.+|+.+++|++|-+ ..|.-+|.||... |. .+.+|+++ .
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~-----~A-------tVti~hs~-------T---- 191 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNA-----NA-------TVDICHIF-------T---- 191 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC-------C----
Confidence 34566788889999999999999999999998 8899999888642 43 34455442 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
++|.+.++. +|++|-..+.++.++.|+|+
T Consensus 192 -------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 -------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 246788887 99999999999999999997
No 109
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.55 E-value=1.7 Score=45.42 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=80.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHhc
Q 009950 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav~ 408 (521)
-||+|.|| |..|..+|..|+.. ++--.+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 36999999 99999999988652 43100111379999985421 111000122111122111111357889998
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEec
Q 009950 409 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 471 (521)
Q Consensus 409 ~vkptvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~Ectpe~A~~wt~G--~aifAs 471 (521)
+ +|++|=+.+.+.. -| +++++.|.+++ ..-||+-.|||. ....--+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 7 9999866655421 23 56778888886 699999999995 5555566666422 122667
Q ss_pred CCCCC
Q 009950 472 GSPFD 476 (521)
Q Consensus 472 GSPf~ 476 (521)
|+=.+
T Consensus 153 gt~LD 157 (325)
T cd01336 153 LTRLD 157 (325)
T ss_pred eehHH
Confidence 75444
No 110
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.24 E-value=0.86 Score=47.39 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
-.-+|-+|++.=|+-.+.+++.+++|++|.+. .|.-+|.||...-. ..| ..+.+|+++.
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~t------------ 195 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSRT------------ 195 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCCc------------
Confidence 34667788999999999999999999999764 57777777754100 012 2455665431
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
.+|.+.++. +|++|+..+.++.+++|+|+ +.-+|.-.+
T Consensus 196 ------------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk------~GavVIDVG 233 (286)
T PRK14184 196 ------------PDLAEECRE--ADFLFVAIGRPRFVTADMVK------PGAVVVDVG 233 (286)
T ss_pred ------------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEee
Confidence 368999998 99999999999999999993 455665443
No 111
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.24 E-value=0.63 Score=48.17 Aligned_cols=85 Identities=29% Similarity=0.452 Sum_probs=54.6
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc
Q 009950 317 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (521)
Q Consensus 317 gll~Alk~~g--~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa 394 (521)
|++.+|+-.+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|+++++ +.+|...| .+.|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR----t~~ra~~L---a~~~~ 171 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR----TRERAEEL---ADLFG 171 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC----CHHHHHHH---HHHhh
Confidence 5677888755 456689999999999999999888774 64 78999998 44443222 22232
Q ss_pred ccc-----CCCCCHHHHhcccCCcEEEEccCCC
Q 009950 395 HEH-----EPVNNLLDAVKVIKPTILIGSSGVG 422 (521)
Q Consensus 395 ~~~-----~~~~~L~eav~~vkptvLIG~S~~~ 422 (521)
+.. ....++.. .+ ..|++|=++..|
T Consensus 172 ~~~~~~~~~~~~~~~~-~~--~~dliINaTp~G 201 (283)
T COG0169 172 ELGAAVEAAALADLEG-LE--EADLLINATPVG 201 (283)
T ss_pred hccccccccccccccc-cc--ccCEEEECCCCC
Confidence 211 11122222 21 489999777654
No 112
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.18 E-value=1 Score=46.74 Aligned_cols=92 Identities=20% Similarity=0.335 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
-.-+|-.|++.-++-.|.+++.++++++|.+. .|.-+|.||.. .|. .+.+|+++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~a-------tVt~chs~------------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----ENA-------TVTYCHSK------------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEeCC-------------
Confidence 34677888899999999999999999999764 67778777754 242 46666542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (521)
..+|.+.+++ +|++|...+.++.|+.|+|+ +.-+|+=-
T Consensus 192 -----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik------~gavVIDv 229 (284)
T PRK14190 192 -----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK------EGAVVIDV 229 (284)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEe
Confidence 1368889988 99999999999999999995 45555543
No 113
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=89.97 E-value=2.2 Score=45.99 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcch
Q 009950 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 341 (521)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs 341 (521)
.++|++++.+.+|- |. +.+-+.+++.+ +-+..++.-..+.|.+.|++|+|-+.
T Consensus 248 T~~~L~~la~~~g~-------~~--~~~~~~~~~er------------------~~~~~~l~~~~~~l~Gkrvai~g~~~ 300 (427)
T PRK02842 248 TRAWLEAAAAAFGI-------DP--DGLEEREAPAW------------------ERARKALEPYRELLRGKRVFFLPDSQ 300 (427)
T ss_pred HHHHHHHHHHHhCc-------CH--hHHHHHHHHHH------------------HHHHHHHHHhhhhcCCcEEEEECCch
Confidence 68899999998863 11 11222233333 33355566666778889999999998
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-----ccCCCCCHHHHhcccCCcEEE
Q 009950 342 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPVNNLLDAVKVIKPTILI 416 (521)
Q Consensus 342 Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~-----~~~~~~~L~eav~~vkptvLI 416 (521)
-.+++++.|.+.+ |+.. ..+-+. ...+ +......+.+.. +..+...+.+.|+..|||.||
T Consensus 301 ~~~~la~~L~eel----Gm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDlli 365 (427)
T PRK02842 301 LEIPLARFLSREC----GMEL-------VEVGTP---YLNR-RFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVV 365 (427)
T ss_pred hHHHHHHHHHHhC----CCEE-------EEeCCC---CCCH-HHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEE
Confidence 9999999988743 7632 212111 0111 101111111111 112234568899999999999
Q ss_pred Ecc
Q 009950 417 GSS 419 (521)
Q Consensus 417 G~S 419 (521)
|-|
T Consensus 366 g~~ 368 (427)
T PRK02842 366 CGL 368 (427)
T ss_pred ccC
Confidence 987
No 114
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.68 E-value=1.8 Score=45.34 Aligned_cols=121 Identities=16% Similarity=0.075 Sum_probs=72.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHhc
Q 009950 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav~ 408 (521)
.||.|+|| |..|..+|-.|+.. |+-.-.-...+.|+|.+.-. ..+..-+|.+..-++..+..-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 99999988877652 44100001279999985422 111111243333233221111135567788
Q ss_pred ccCCcEEEEccCCC---CCCC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 009950 409 VIKPTILIGSSGVG---RTFT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (521)
Q Consensus 409 ~vkptvLIG~S~~~---g~Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~Ectpe~A~~wt 463 (521)
+ .|++|=+.+.+ | .| +++.+.+.+++ +.-||+-.|||. .+..--+++++
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 142 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIAMKNA 142 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 7 99998655543 2 23 46777788899 499999999995 44454555544
No 115
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.66 E-value=1.1 Score=46.58 Aligned_cols=93 Identities=23% Similarity=0.375 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
-.-+|-+|++.=++-.|.+++..+++|+|. |..|.-+|.+|... |. .+.+|.+ +.
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s-------~t----- 192 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHS-------RT----- 192 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECC-------CC-----
Confidence 356777888888999999999999999999 99999999999763 53 3444422 11
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
.+|.++++. +|++|-.-+.++.+++++++ +..+|.=.+
T Consensus 193 ------------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvg 230 (284)
T PRK14179 193 ------------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVG 230 (284)
T ss_pred ------------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEec
Confidence 268899998 99999999999999998854 556666555
No 116
>PRK05442 malate dehydrogenase; Provisional
Probab=89.59 E-value=1.2 Score=46.84 Aligned_cols=129 Identities=15% Similarity=0.069 Sum_probs=75.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCh-hhhcCcEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHh
Q 009950 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPV-EETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~-eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav 407 (521)
.||.|+|| |..|..+|-.|+.. |+-. .+ ...|.|+|.+.-. .++..-+|.+...++-+...-..+..+.+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~-~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~ 78 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLGKDQ-PVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAF 78 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcCCCC-ccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHh
Confidence 38999998 99999998877653 3310 00 1279999985321 11111124333323322211124566778
Q ss_pred cccCCcEEEEccCC---CC-----------CCCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccCC---cEEE
Q 009950 408 KVIKPTILIGSSGV---GR-----------TFTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG---RAIF 469 (521)
Q Consensus 408 ~~vkptvLIG~S~~---~g-----------~Ft~evv~~Ma~~~-erPIIFaLSNPt~~~Ectpe~A~~wt~G---~aif 469 (521)
++ .|++|=+.+. +| .+=+++.+.+.+++ ...||+-.|||. .++.--+++++.| +-||
T Consensus 79 ~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s~g~p~~rVi 153 (326)
T PRK05442 79 KD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNAPDLPAENFT 153 (326)
T ss_pred CC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHcCCCCHHHEE
Confidence 87 9988855443 33 12346677788866 699999999995 5555555555522 1266
Q ss_pred ec
Q 009950 470 AS 471 (521)
Q Consensus 470 As 471 (521)
++
T Consensus 154 G~ 155 (326)
T PRK05442 154 AM 155 (326)
T ss_pred ee
Confidence 66
No 117
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.57 E-value=0.19 Score=47.18 Aligned_cols=99 Identities=24% Similarity=0.401 Sum_probs=54.5
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC-------------CccccCCccCCchhchhhc
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWA 394 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~-------------GLi~~~R~~~l~~~k~~fa 394 (521)
.+.-.+|||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~ 81 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFD 81 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CC
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccc
Confidence 35668999999999999999998663 53 34445542 0101 00000000 0022
Q ss_pred cc----cCC--CCCHHHHhcccCCcEEEEcc-----CCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 395 HE----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 395 ~~----~~~--~~~L~eav~~vkptvLIG~S-----~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
+. ... ...|.+.++. .|++|+.. ..|-+||+|+++.|. +--+|-=+|
T Consensus 82 ~~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~---~gsvIvDis 139 (168)
T PF01262_consen 82 KADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK---PGSVIVDIS 139 (168)
T ss_dssp HHHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS---TTEEEEETT
T ss_pred hhhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC---CCceEEEEE
Confidence 21 011 1368888887 89999753 334689999999996 333444343
No 118
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.57 E-value=1.2 Score=45.04 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998764 53 68888874
No 119
>PRK07574 formate dehydrogenase; Provisional
Probab=89.52 E-value=3.4 Score=44.57 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=84.6
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (521)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+... .. + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---PE-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---ch-h-h---Hhhc--CceecCCHHH
Confidence 3468999999999999999999998653 54 5788887532 00 0 0 0011 1112357999
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc-c-cCCcEEEecCCCCCcce
Q 009950 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGSPFDPFE 479 (521)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~-w-t~G~aifAsGSPf~pv~ 479 (521)
+++. .|+++=.-- .-++|+++++..|. +..++.=.|. .++.-++|+. + ..|+.-.|..-=|.+--
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaLDV~~~EP 315 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAGDVWFPQP 315 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEEecCCCCC
Confidence 9987 898874321 12689999999996 5678887665 4444444432 1 34655444432222110
Q ss_pred eCCEEecc-ccccceeechhhh
Q 009950 480 YNGKVFVP-GQANNAYIFPGFG 500 (521)
Q Consensus 480 ~~Gr~~~p-~Q~NN~~iFPGig 500 (521)
.. ...| -+..|+.+-|=++
T Consensus 316 lp--~d~pL~~~pNvilTPHia 335 (385)
T PRK07574 316 AP--ADHPWRTMPRNGMTPHIS 335 (385)
T ss_pred CC--CCChHHhCCCeEECCccc
Confidence 00 0011 2345888888665
No 120
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=89.49 E-value=2.1 Score=44.78 Aligned_cols=128 Identities=24% Similarity=0.350 Sum_probs=79.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~--~~~~~L~eav~~ 409 (521)
||.|+|| |..|..+|-+|+.. |+ ...+.|+|.+. ..+-.-+|.+.. ...+-. ....++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-----~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-----PY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 99999999987542 54 26799999876 222111244322 101111 011246788888
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHHHHhcccC--CcEEEecC
Q 009950 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYTWSK--GRAIFASG 472 (521)
Q Consensus 410 vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~Ectpe~A~~wt~--G~aifAsG 472 (521)
.|++|=+.+.+.. .=+++.+.+.+++...||+-.|||.. ++.+...-+++++. -+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 9988855554321 22467778888999999999999962 12225555665431 12488888
Q ss_pred CCCC
Q 009950 473 SPFD 476 (521)
Q Consensus 473 SPf~ 476 (521)
. .+
T Consensus 146 ~-LD 148 (312)
T TIGR01772 146 T-LD 148 (312)
T ss_pred c-ch
Confidence 5 55
No 121
>PRK14851 hypothetical protein; Provisional
Probab=89.46 E-value=1.3 Score=50.96 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=78.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc-------cCCchhchhhccc---
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAHE--- 396 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~-------~~l~~~k~~fa~~--- 396 (521)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|-+=+-.++-. +++-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 578899999999999999999999886 75 78999997633222110 0111122222211
Q ss_pred -c----------CCC--CCHHHHhcccCCcEEEEccCCCCCC-CHHHHHHHHcCCCCcEEEEcC----------CCCCCC
Q 009950 397 -H----------EPV--NNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILALS----------NPTSQS 452 (521)
Q Consensus 397 -~----------~~~--~~L~eav~~vkptvLIG~S~~~g~F-t~evv~~Ma~~~erPIIFaLS----------NPt~~~ 452 (521)
. ..+ .++.+.+++ .|++|-+..-. .| ++..|...+..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 0 111 246677776 89998555321 22 345677778788899998754 665
Q ss_pred CCCHHHHhcccCC
Q 009950 453 ECTAEEAYTWSKG 465 (521)
Q Consensus 453 Ectpe~A~~wt~G 465 (521)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5777888887666
No 122
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.46 E-value=1.4 Score=42.94 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=59.6
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc---cc-c----CCCCCH
Q 009950 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 403 (521)
Q Consensus 333 riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa---~~-~----~~~~~L 403 (521)
||.|+| +|..|..+|..+.+. | .+++++|+. .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 699997 899999999999753 4 467777763 111 211111111 00 0 011366
Q ss_pred HHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 009950 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (521)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (521)
.++++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788876 88777 44434 3457788888654344799999999854
No 123
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.38 E-value=0.54 Score=48.33 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=53.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhch--------hhccccCCCCCH
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--------PWAHEHEPVNNL 403 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~--------~fa~~~~~~~~L 403 (521)
-||.|+|+|+.|.++|..|... | .++.++|+..= +.+.+....+ ..........++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 3799999999999999999764 4 34777777311 0011111100 000001123477
Q ss_pred HHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
.|+++. .|++|=+-. . ...+++++.+. +.-+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~~v~-~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVVAVP-S-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEEECc-h-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 788765 677663322 2 23577776664 344666678864
No 124
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=89.38 E-value=1.3 Score=42.20 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+---+|-.|++.-++-.+-+|+..+++++|.+. .|.-+|.||... |. .+.+|+++
T Consensus 14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~------------ 69 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK------------ 69 (160)
T ss_dssp SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT------------
T ss_pred CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC------------
Confidence 334567888899999999999999999999985 888888887652 32 24445543
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.++|.+.++. +|++|-..+.++.++.++|+
T Consensus 70 ------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ------------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1457777886 99999999999999999986
No 125
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.12 E-value=0.79 Score=47.30 Aligned_cols=127 Identities=21% Similarity=0.336 Sum_probs=76.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccC-CCCCHHHHhcccC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 411 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~-~~~~L~eav~~vk 411 (521)
||.|+|+|..|..+|..++.. |+ ...++++|..-=...+...++.+. .+|-.... ...+. +++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-----g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-----GL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-----CC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 799999999999999887653 54 367999997411011000012211 12211100 01344 55776
Q ss_pred CcEEEEccCCCCC----C----------CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEecCCCC
Q 009950 412 PTILIGSSGVGRT----F----------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSPF 475 (521)
Q Consensus 412 ptvLIG~S~~~g~----F----------t~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifAsGSPf 475 (521)
.|+.|=+.+.+.. . =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.-.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 8887755444311 1 146788888899999999999994 666666666651 24488888655
Q ss_pred C
Q 009950 476 D 476 (521)
Q Consensus 476 ~ 476 (521)
+
T Consensus 145 D 145 (308)
T cd05292 145 D 145 (308)
T ss_pred h
Confidence 3
No 126
>PRK08291 ectoine utilization protein EutC; Validated
Probab=88.99 E-value=1.5 Score=45.68 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc
Q 009950 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (521)
Q Consensus 317 gll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~ 396 (521)
|.+++..... -..++++|+|+|..|..++..+... .++ +++.++|+. .++ ...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4455554432 2347999999999988888776543 233 578888763 222 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 009950 397 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (521)
Q Consensus 397 ----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~ 458 (521)
.....++.++++. +|++|-++.. ..+|+.++++.- --|.++ |+--.+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~g------~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHPG------LHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCCC------ceEEeeCCCCCCcccCCHHH
Confidence 1224688999986 8999877543 346777776531 123333 3333346888765
No 127
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.73 E-value=1.3 Score=46.21 Aligned_cols=96 Identities=15% Similarity=0.290 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-+|++.=++..+.+++.+++||+|.+. .|.-+|.||.+.+.+ .| ..+.+|.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 3456678888899999999999999999764 677788887653211 12 234454432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
..+|.+.+++ +|++|+..+.++.|++++|+ +.-+|.-.+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDVg 235 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDVG 235 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEee
Confidence 1358899988 99999999999999999993 556665443
No 128
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.70 E-value=1.3 Score=46.24 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-.|++.=|+-.+.+++.++|+|+| .|..|..+|.+|+.. |. .+.+++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4567788888889999999999999999 999999999999753 53 46666532 11
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
+|.|+++. +|++|-+-+.++.+++++++ +.-+|.=++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~lk------~GavVIDvG 230 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDWIK------PGATVIDVG 230 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchheec------CCCEEEEcC
Confidence 47888887 99999988888888887733 445665554
No 129
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.65 E-value=1.2 Score=46.37 Aligned_cols=126 Identities=16% Similarity=0.297 Sum_probs=77.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc--ccC-CCCCHHHHhcc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHE-PVNNLLDAVKV 409 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~--~~~-~~~~L~eav~~ 409 (521)
||.|+|||..|..+|-.|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. +.. ..++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998875 255 3689999973111111111233221 2221 100 0123 456777
Q ss_pred cCCcEEEEccCCC---CCCC--------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEe
Q 009950 410 IKPTILIGSSGVG---RTFT--------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (521)
Q Consensus 410 vkptvLIG~S~~~---g~Ft--------------~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifA 470 (521)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||. .+..--+++++. -+-+|.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv---Dv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL---DIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH---HHHHHHHHHHhCcChhheec
Confidence 89988666543 3 23 57888889999999999999995 455555555541 244777
Q ss_pred cCCCCC
Q 009950 471 SGSPFD 476 (521)
Q Consensus 471 sGSPf~ 476 (521)
||.=.+
T Consensus 143 ~gt~LD 148 (307)
T cd05290 143 TGTMLD 148 (307)
T ss_pred ccchHH
Confidence 775433
No 130
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.58 E-value=1.7 Score=45.21 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhc
Q 009950 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (521)
Q Consensus 312 aV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k 390 (521)
-+|-.|++.=++-.+.+|+.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 456677788888899999999999999764 67777777754 242 46666653
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 391 ~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.++|.+.+++ +|++|...+.++.++.|+|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 131
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=88.42 E-value=0.95 Score=49.44 Aligned_cols=128 Identities=16% Similarity=0.257 Sum_probs=74.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCC-----CCCHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~-~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~-----~~~L~ 404 (521)
.||+|+||||+ -+..|+..+.+. ..++ ...|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 38999999996 444555555432 2342 47899999753 3322122222222222 112 25899
Q ss_pred HHhcccCCcEEEEccCC--------------------------CCC--------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009950 405 DAVKVIKPTILIGSSGV--------------------------GRT--------FTKEVIEAMASFNEKPLILALSNPTS 450 (521)
Q Consensus 405 eav~~vkptvLIG~S~~--------------------------~g~--------Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (521)
||+++ +|.+|=.-.+ ||. .-.++++.|.+.|.+.+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99988 8777633222 232 2258888999999999999999998
Q ss_pred CCCCCHHHHhc-ccCCcEEEecCCCC
Q 009950 451 QSECTAEEAYT-WSKGRAIFASGSPF 475 (521)
Q Consensus 451 ~~Ectpe~A~~-wt~G~aifAsGSPf 475 (521)
..+|- -+++ ++.-|+|=-+-+|+
T Consensus 147 -~~vt~-~~~~~~~~~kviGlC~~~~ 170 (437)
T cd05298 147 -AIVAE-ALRRLFPNARILNICDMPI 170 (437)
T ss_pred -HHHHH-HHHHHCCCCCEEEECCcHH
Confidence 44332 2222 23345543344444
No 132
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.39 E-value=0.99 Score=43.99 Aligned_cols=100 Identities=13% Similarity=0.245 Sum_probs=58.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcc
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~ 409 (521)
++.||.|+|+|..|..++..++.. |.. -.++++++++.- .+.+...++.|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRSN------VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCCC------HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999888653 310 123466665420 111222222221 1122467788875
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
.|++| ++.++. .-+++++.++.+-+..+|+.++.-.
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC
Confidence 78776 444443 4488888887543345666676554
No 133
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.21 E-value=1.9 Score=44.66 Aligned_cols=90 Identities=19% Similarity=0.342 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-+|++.=++-.+.+|+.++++++|-+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4668888899999999999999999999764 67788887754 243 46666652
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (521)
..+|.+.+++ +|++|-..+.++.|++|+|+ +..+|+=
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVID 228 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK------EGAIVID 228 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCcEEEE
Confidence 1357888887 99999999999999999997 4556653
No 134
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.07 E-value=1.1 Score=45.84 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.|++.+++..|.+. +.++|++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45677777666653 4699999999999999888765 364 679999984
No 135
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=87.85 E-value=2.7 Score=44.12 Aligned_cols=122 Identities=17% Similarity=0.104 Sum_probs=73.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHhc
Q 009950 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav~ 408 (521)
-||.|+|| |..|..+|-.|+.. |+-.-.-...+.|+|.+.-. .++..-+|.+..-++.+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG-----ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-----CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 47999998 99999999887652 54100011279999986311 111111233322222221111145667788
Q ss_pred ccCCcEEEEccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEEcCCCCCCCCCCHHHHhccc
Q 009950 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPTSQSECTAEEAYTWS 463 (521)
Q Consensus 409 ~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e-rPIIFaLSNPt~~~Ectpe~A~~wt 463 (521)
+ .|++|=+.+.+ |- +=+++++.+++++. .-||+--|||. ..+.--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 7 89988555543 21 12467788889997 99999999995 55555666665
No 136
>PRK08374 homoserine dehydrogenase; Provisional
Probab=87.76 E-value=2.8 Score=44.12 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=64.0
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHHhcCCChhhhcCcEEEEecCCccccCCccCC---chhchhhcccc------C-
Q 009950 332 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL---QHFKKPWAHEH------E- 398 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~---~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l---~~~k~~fa~~~------~- 398 (521)
.+|.++|.|..|.+++++|.+ .+.++.|+. -+=+-++|++|-+...+.-++ .++++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999976 333334532 122446799998877553112 12222222100 0
Q ss_pred CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009950 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (521)
..-++.|.++...+||+|-+++.. ...++++..-+ +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~--~a~~~~~~al~-~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK--NAHEWHLEALK-EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH--HHHHHHHHHHh-hCCcEEE
Confidence 012788888777899999999632 33444444322 4677875
No 137
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=87.71 E-value=2 Score=44.98 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+-.-+|-+|++.=++-.|.+|+.+++||+|-+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~A-------TVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----ADA-------TVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 345667788888899999999999999999764 57777777754 242 46777653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 138
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.70 E-value=2.1 Score=45.75 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=21.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
...||.|+|||+-|+++|..+.+.
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc
Confidence 457999999999999999999764
No 139
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.65 E-value=0.6 Score=45.88 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|++.||+++|+|..|..||+.|+.. |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467889999999999999999999764 75 789999986
No 140
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.50 E-value=1.4 Score=48.60 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=52.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh------------chhhccc--c
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 397 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~------------k~~fa~~--~ 397 (521)
.||-|+|+|..|.+||..++.. |. ++.++|..- +..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 3799999999999999999764 54 577888731 110001000 0001000 0
Q ss_pred CCCCCHHHHhcccCCcEEEEccCCCCC-CCHHHHHHHHcCCCCcEEEEcC
Q 009950 398 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 398 ~~~~~L~eav~~vkptvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLS 446 (521)
....++.|++++ .|++| .+..... +.+++.+.+.+..+.-.|++.|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~Ss 115 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSS 115 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 122467777776 77777 4443332 3555555555544444555444
No 141
>PLN02306 hydroxypyruvate reductase
Probab=87.45 E-value=4.5 Score=43.63 Aligned_cols=175 Identities=17% Similarity=0.231 Sum_probs=100.0
Q ss_pred cCCCceeccCC---CchHHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcchHHHHHHHHHHH
Q 009950 297 GTTHLVFNDDI---QGTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 297 r~~~~~FnDDi---QGTaaV~LAgll~Alk~---------------------~g~~L~d~riv~~GAGsAg~Gia~ll~~ 352 (521)
+..+.|.|--- ..+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 34677776432 22344456666665542 1346889999999999999999999865
Q ss_pred HHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc--------c--cCCCCCHHHHhcccCCcEEEEc----
Q 009950 353 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 418 (521)
Q Consensus 353 ~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~--------~--~~~~~~L~eav~~vkptvLIG~---- 418 (521)
+| |+ +++.+|+..- . .+......+.. . .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 53 54 6888887421 0 01100001100 0 0112589999987 9998873
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEecCC-CC--CcceeCCEEeccccccce
Q 009950 419 SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGS-PF--DPFEYNGKVFVPGQANNA 493 (521)
Q Consensus 419 S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~-~w-t~G~aifAsGS-Pf--~pv~~~Gr~~~p~Q~NN~ 493 (521)
...-|.|+++.++.|. +..++.=.|. .++-=|+|+ ++ ..|+. .+.|- =| +|. .+. .--+..|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~aR----G~lVDe~AL~~AL~sg~i-~gAaLDVf~~EP~-~~~---~L~~~pNV 315 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNASR----GPVIDEVALVEHLKANPM-FRVGLDVFEDEPY-MKP---GLADMKNA 315 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHhCCe-eEEEEeCCCCCCC-Ccc---hHhhCCCE
Confidence 1224799999999996 5667665554 444444443 22 23543 33221 01 111 010 11245788
Q ss_pred eechhhhHH
Q 009950 494 YIFPGFGLG 502 (521)
Q Consensus 494 ~iFPGiglG 502 (521)
.+-|=++-.
T Consensus 316 ilTPHiag~ 324 (386)
T PLN02306 316 VVVPHIASA 324 (386)
T ss_pred EECCccccC
Confidence 998887643
No 142
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.44 E-value=2.7 Score=42.16 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=57.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccC-CccCCch--hchhhccccCCCCCHHHHhcc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FKKPWAHEHEPVNNLLDAVKV 409 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~-R~~~l~~--~k~~fa~~~~~~~~L~eav~~ 409 (521)
||.|+|+|+.|..+|..|.+. | .+++++++ +--.+. +...+.- .....-.......++.++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 799999999999999998763 4 46888887 211000 0000100 000000000112456665554
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 009950 410 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (521)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (521)
+|++|=+.- . ...+++++.++.+ .++.+|+.+.|.-.
T Consensus 69 --~d~vilavk-~-~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 69 --FDLVILAVK-A-YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCEEEEEec-c-cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 786663332 2 3578899888763 34567888999863
No 143
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.27 E-value=1.5 Score=46.01 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=53.2
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC---CC-----CCCHHHHhcccCCcEEEecCCCCC
Q 009950 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QS-----ECTAEEAYTWSKGRAIFASGSPFD 476 (521)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~~-----Ectpe~A~~wt~G~aifAsGSPf~ 476 (521)
++-+..+|+++|..|+. +....++-+.+ ++-+|=|+.=.-||.. .- +-|.++++++.. . |+..-=..
T Consensus 104 ~l~~~~~~~aIlaSnTS-~l~~s~la~~~-~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lGk~ 178 (321)
T PRK07066 104 RISRAAKPDAIIASSTS-GLLPTDFYARA-THPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALGMR 178 (321)
T ss_pred HHHHhCCCCeEEEECCC-ccCHHHHHHhc-CCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcCCE
Confidence 44455678888888876 34333333333 3445557777788863 22 335555555431 1 22222234
Q ss_pred cceeCCEEeccccccceeechhhhHHHHHhCC
Q 009950 477 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGA 508 (521)
Q Consensus 477 pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a 508 (521)
||.+. .+.||-.=|-+.+|.+-=+.-+..-
T Consensus 179 pV~v~--kd~pGFi~NRl~~a~~~EA~~lv~e 208 (321)
T PRK07066 179 PLHVR--KEVPGFIADRLLEALWREALHLVNE 208 (321)
T ss_pred eEecC--CCCccHHHHHHHHHHHHHHHHHHHh
Confidence 55432 2678888888877776555544433
No 144
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.18 E-value=0.7 Score=45.50 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 468899999999999999999999875 75 789999987
No 145
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.08 E-value=2.3 Score=44.31 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=67.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCC
Q 009950 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (521)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (521)
.+-.-+|-+|++.=++..+.+++..++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~----------- 192 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK----------- 192 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 3446778888999999999999999999999764 67778877754 243 35566553
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 387 ~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 193 -------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 -------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1358888887 99999999999999999997
No 146
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.04 E-value=2 Score=43.85 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=62.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhccc-C
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 411 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v-k 411 (521)
||-|+|.|..|..+|..+.+. | .++.+.|+. .++ ....++. ......++.+.++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~~---~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QDA---VKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HHH---HHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999988663 4 356667763 111 1111111 111224566655432 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHH
Q 009950 412 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAE 457 (521)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~~Ectpe 457 (521)
+|++|= +.+.+ ..+++++.++.+ .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44455 888999888754 3568999999865 555554
No 147
>PRK13243 glyoxylate reductase; Reviewed
Probab=86.87 E-value=6.1 Score=41.47 Aligned_cols=144 Identities=13% Similarity=0.102 Sum_probs=84.4
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (521)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. + . .. ...+. -...+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~-----~-~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR-----K-P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC-----C-h-hh--HHHcC---CEecCHHH
Confidence 4568999999999999999999998643 54 578888742 1 1 10 01111 12347999
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEecCCCCCcce
Q 009950 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPFE 479 (521)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~-~w-t~G~aifAsGSPf~pv~ 479 (521)
+++. .|+++=.-- .-+.|+++.++.|. +..++.=.|.= ++--|+|+ ++ ..|+.-.|.=-=|++--
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aRg----~~vd~~aL~~aL~~g~i~gAaLDV~~~EP 271 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTARG----KVVDTKALVKALKEGWIAGAGLDVFEEEP 271 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcCc----hhcCHHHHHHHHHcCCeEEEEeccCCCCC
Confidence 9987 898885431 13688999999996 67777766653 33333332 22 34554333211111100
Q ss_pred eCCEEeccccccceeechhhhHHHH
Q 009950 480 YNGKVFVPGQANNAYIFPGFGLGLV 504 (521)
Q Consensus 480 ~~Gr~~~p~Q~NN~~iFPGiglG~l 504 (521)
..+.. --+..|+++-|=++-...
T Consensus 272 ~~~~p--L~~~~nvilTPHia~~t~ 294 (333)
T PRK13243 272 YYNEE--LFSLKNVVLAPHIGSATF 294 (333)
T ss_pred CCCch--hhcCCCEEECCcCCcCHH
Confidence 01111 123568999998775443
No 148
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.80 E-value=2.6 Score=44.09 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
-.-+|-.|++.-++..+.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 139 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVt~chs~------------- 193 (294)
T PRK14187 139 LIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----ENC-------TVTTVHSA------------- 193 (294)
T ss_pred ccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CCC-------EEEEeCCC-------------
Confidence 35667888899999999999999999999764 57777777754 242 35666653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (521)
.++|.+.+++ +|++|-..+.++.++.|+|+ +.-||+=
T Consensus 194 -----------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gaiVID 230 (294)
T PRK14187 194 -----------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK------KGAIVID 230 (294)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 1357888887 99999999999999999997 4556543
No 149
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=86.74 E-value=1.4 Score=45.10 Aligned_cols=120 Identities=18% Similarity=0.367 Sum_probs=72.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCcc----CCchhchhhcccc---CCCCCHHHH
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 406 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~----~l~~~k~~fa~~~---~~~~~L~ea 406 (521)
|.|+|||..|.++|..++. .|+ + .++++|.+ .++.+ .+.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5789999999999988765 254 2 69999985 22110 011110 010000 111354 45
Q ss_pred hcccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEe
Q 009950 407 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (521)
Q Consensus 407 v~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifA 470 (521)
++. +|++|=+.+.+ | .+-+++++.|.+++...+|+-.|||. ......++++++ -+-+|+
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s~~~~~rviG 138 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKASGFPRNRVIG 138 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCHHHEEE
Confidence 776 89888433322 1 12347888899999999999999996 455556666652 125888
Q ss_pred cCCCC
Q 009950 471 SGSPF 475 (521)
Q Consensus 471 sGSPf 475 (521)
+|+-.
T Consensus 139 lgt~l 143 (300)
T cd01339 139 MAGVL 143 (300)
T ss_pred ecchH
Confidence 88533
No 150
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.73 E-value=2.4 Score=44.12 Aligned_cols=85 Identities=20% Similarity=0.362 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-.|++.-++-.|.+|+.+++|++|.+ ..|.-+|.||... ..|. .+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~a-------tVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SENA-------TVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCCC-------EEEEeCCC--------------
Confidence 467788889999999999999999999976 4677787777531 0132 35555542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
..+|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368888988 99999999999999999997
No 151
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.69 E-value=2.3 Score=42.08 Aligned_cols=120 Identities=11% Similarity=0.170 Sum_probs=70.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (521)
.||.|+|+|..|..+|..+.+. |. ...+++++|+.. +.....+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999988653 42 124678887631 1122222211 01122467777765
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC-CcEEEecCCCCCccee
Q 009950 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASGSPFDPFEY 480 (521)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~-G~aifAsGSPf~pv~~ 480 (521)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|.. +..+ ...-|..|..+
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~i-v~~~P~~p~~~ 123 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPV-VRAMPNTPALV 123 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcE-EEecCCchHHH
Confidence 78776 44433 45778888887544 358888988763 334444543 3222 23456555543
No 152
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.64 E-value=0.77 Score=46.04 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=33.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|++.||+++|+|..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 468889999999999999999999875 75 789999987
No 153
>PLN02602 lactate dehydrogenase
Probab=86.57 E-value=1.5 Score=46.66 Aligned_cols=125 Identities=19% Similarity=0.322 Sum_probs=79.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCC---CCHHHHhc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 408 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~---~~L~eav~ 408 (521)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|..-=...+-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998765 265 3679999973211111111133222 22211 111 34544 67
Q ss_pred ccCCcEEEEccCCC---CCCCH------------HHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEec
Q 009950 409 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 471 (521)
Q Consensus 409 ~vkptvLIG~S~~~---g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifAs 471 (521)
+ +|++|=+.+.+ | -|. ++++.|.+++.+-+|+-.|||. .....-+++++. -+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 6 99998665543 3 233 7788888999999999999995 566666676662 1457888
Q ss_pred CCCC
Q 009950 472 GSPF 475 (521)
Q Consensus 472 GSPf 475 (521)
|.--
T Consensus 179 gt~L 182 (350)
T PLN02602 179 GTNL 182 (350)
T ss_pred cchH
Confidence 7443
No 154
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.41 E-value=0.67 Score=44.98 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 468899999999999999999999875 76 7899999874
No 155
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.34 E-value=2.7 Score=43.74 Aligned_cols=84 Identities=21% Similarity=0.407 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
-.-+|-+|++.=++-.|.+|+.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 45677888888899999999999999999764 57777777753 242 35566542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
..+|.+.++. +|++|-..+.++.|+.|+|+
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357888887 99999999999999999997
No 156
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.20 E-value=2.4 Score=44.10 Aligned_cols=95 Identities=17% Similarity=0.280 Sum_probs=72.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCC
Q 009950 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (521)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (521)
.+-.-+|-+|++.=++-.|.+++.+++|++|-+. .|--+|.||.. .|. .+.+|+|+ .
T Consensus 134 ~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------T--- 191 (282)
T PRK14166 134 SGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK-------T--- 191 (282)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C---
Confidence 3445678888999999999999999999999764 67778777754 242 35556553 1
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 387 ~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
++|.+.+++ +|++|-..+.++.||+++|+ +.-||+=-.
T Consensus 192 --------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~GavVIDvG 229 (282)
T PRK14166 192 --------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK------EGVIVVDVG 229 (282)
T ss_pred --------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEec
Confidence 358888887 99999999999999999997 455665433
No 157
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.94 E-value=2.7 Score=44.84 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=30.3
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+++.+++|+|+|.+|.++|+.|+.. | .+++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 46788999999999999999998764 5 468999986
No 158
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.84 E-value=2.7 Score=43.97 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+-.-+|-+|++.=|+-.|.+++.++++|+|.+. .|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 445667788888899999999999999999764 57777777754 2221 01235555443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
.++|.+.+++ +|++|-..+.++.++.|+|+ +..||+=-.
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gavVIDvG 237 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK------PGATVIDVG 237 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEecC
Confidence 1358888987 99999999999999999997 455665543
No 159
>PRK06141 ornithine cyclodeaminase; Validated
Probab=85.69 E-value=3.6 Score=42.65 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=65.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCCHHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 406 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~L~ea 406 (521)
...+++|+|+|..|..+++.+... .+ .++|+++|+. .++ ...+...+.+. .....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~------~~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RP------IKQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CC------CCEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999999877553 13 2678888773 222 22222333211 1123688999
Q ss_pred hcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 009950 407 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (521)
Q Consensus 407 v~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~ 458 (521)
+++ .|++|-+++.. .+|+.++++. .-.|-+. |++..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~~------g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLKP------GTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcCC------CCEEEeeCCCCcccccCCHHH
Confidence 986 99998776543 3477766632 2244444 5566678999864
No 160
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.54 E-value=2.6 Score=42.05 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=56.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccC-CccCCchhchhhccccCCCCCHHHHhcccC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~-R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (521)
||.|+|+|+.|..+|..|.+. | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999988763 4 468888874311100 0000100000000000112345554 4 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCCC
Q 009950 412 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 450 (521)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 450 (521)
+|++| ++... .-++++++.++..- ++-+|+.+.|.-.
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 88777 44433 34689999988643 3346667999753
No 161
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.47 E-value=2 Score=43.34 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=58.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccC-CccCCch--hc-hhhccccCCCCCHHHHhc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FK-KPWAHEHEPVNNLLDAVK 408 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~-R~~~l~~--~k-~~fa~~~~~~~~L~eav~ 408 (521)
||.|+|+|..|..+|..|... | .+++++|+..-.... +...... .. ...........++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998763 4 357788875311100 0000000 00 000000011246777877
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 009950 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (521)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (521)
. +|++| ++... ...+++++.+..+ .+..+|..++|-..
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 6 78777 33323 3678888887754 34568888887543
No 162
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.29 E-value=0.77 Score=44.61 Aligned_cols=77 Identities=16% Similarity=0.309 Sum_probs=53.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cC-CCCC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HE-PVNN 402 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~-~~~~ 402 (521)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|+. +.|... .+ ....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999875 75 7899999973 2222 2332 122221 11 1235
Q ss_pred HHHHhcccCCcEEEEccC
Q 009950 403 LLDAVKVIKPTILIGSSG 420 (521)
Q Consensus 403 L~eav~~vkptvLIG~S~ 420 (521)
+.+.++...|++-|=...
T Consensus 80 ~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 80 SLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 778888888998775443
No 163
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.26 E-value=1.3 Score=48.71 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=63.1
Q ss_pred eeeecCCCccHHHHHHHHcC-CCc--eeccCCCchHHHHHHHHHHHHHHhCC--------CcccceEEEeCcchHHHHHH
Q 009950 279 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIGG--------TLAEHRFLFLGAGEAGTGIA 347 (521)
Q Consensus 279 Iq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alk~~g~--------~L~d~riv~~GAGsAg~Gia 347 (521)
|.+|=+....-.++.++|.- ..| ++||+....|....+-++.+++.... .-.+..+||+|||.||++.|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66777777777888999974 444 45777788888888899988875321 23456899999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 348 ELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 348 ~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
..+... |+ ++.++|.+
T Consensus 228 ~~la~~-----G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAARK-----GI-------RTGIVAER 243 (517)
T ss_pred HHHHHC-----CC-------cEEEEecC
Confidence 988653 64 56666654
No 164
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.15 E-value=1.2 Score=47.43 Aligned_cols=106 Identities=23% Similarity=0.380 Sum_probs=72.6
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHH
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~ 404 (521)
...-|++++|.|-+|+--|++.+- +. .++.++|.. .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~g-------lg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIG-------LG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHhc-------cC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 567899999999999999987653 31 467777763 233 44444445433 12335799
Q ss_pred HHhcccCCcEEEEc-----cCCCCCCCHHHHHHHHcCCCCcEE----------EEcCCCCCCCCCCHHH
Q 009950 405 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFNEKPLI----------LALSNPTSQSECTAEE 458 (521)
Q Consensus 405 eav~~vkptvLIG~-----S~~~g~Ft~evv~~Ma~~~erPII----------FaLSNPt~~~Ectpe~ 458 (521)
|++++ +|++||. +..|.+.|+|+++.|. +-.+| |-=|.||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk---pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK---PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcC---CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99987 9999987 3445689999999997 33343 5556777777766553
No 165
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.04 E-value=1.3 Score=48.53 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcC-CCc--eeccCCCchHHHHHHHHHHHHHHh--------CCCcccc
Q 009950 264 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEH 332 (521)
Q Consensus 264 efv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alk~~--------g~~L~d~ 332 (521)
+.+..+.... |+ |..|=+....-.++.++|.- ..| ++|++..+.+....+-+++.++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3334444444 43 44555777777888999974 444 458887888888888888877644 1224457
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009950 333 RFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (521)
++||+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999988765
No 166
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=85.02 E-value=6.4 Score=41.33 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=68.4
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (521)
+..|.+.+|.|+|.|..|..+|+.+... |. +++.+|+.- . . .. .+.+ ...+|.|
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V~~~d~~~----~--~-~~----~~~~---~~~~l~e 194 (330)
T PRK12480 141 SKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TITAYDAYP----N--K-DL----DFLT---YKDSVKE 194 (330)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEeCCh----h--H-hh----hhhh---ccCCHHH
Confidence 3468899999999999999999988642 53 588888642 1 0 00 1111 2347999
Q ss_pred HhcccCCcEEEEccC-C---CCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc-cCCcEEEe
Q 009950 406 AVKVIKPTILIGSSG-V---GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW-SKGRAIFA 470 (521)
Q Consensus 406 av~~vkptvLIG~S~-~---~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~w-t~G~aifA 470 (521)
+++. .|+++=.-- . -+.|.++++..|. +..++.-.|.- .-+.-++.+++ ..|+.-.|
T Consensus 195 ll~~--aDiVil~lP~t~~t~~li~~~~l~~mk---~gavlIN~aRG---~~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 195 AIKD--ADIISLHVPANKESYHLFDKAMFDHVK---KGAILVNAARG---AVINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred HHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC---CCcEEEEcCCc---cccCHHHHHHHHHcCCeeEE
Confidence 9987 887763321 1 1467778888885 56677755542 33344433333 24554433
No 167
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.96 E-value=0.49 Score=52.51 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=28.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (521)
.+..+|+|+|||.||+..|++|.+... .+..=|||+|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 344689999999999999999988632 2455677765
No 168
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.76 E-value=2.6 Score=43.42 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=61.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc-ccc---CCCCC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEH---EPVNN 402 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa-~~~---~~~~~ 402 (521)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-..+ ++. | .++ .+. ....-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~sN----lnR-Q-~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVTN----TNR-Q-IHALRDNVGLAKAEV 88 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEecccc----ccc-c-cccChhhcChHHHHH
Confidence 468899999999999999999999875 65 789999987443322 432 1 112 110 01124
Q ss_pred HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009950 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (521)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (521)
+.+.+..+.|++-|-.- ...+++|-+...-...-.=||-+.-|+.+
T Consensus 89 ~~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~ 134 (268)
T PRK15116 89 MAERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRP 134 (268)
T ss_pred HHHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHH
Confidence 55666666677655332 22345554444322122335556666553
No 169
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.74 E-value=1.2 Score=44.72 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999875 65 789999987
No 170
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=84.73 E-value=1.4 Score=43.12 Aligned_cols=109 Identities=16% Similarity=0.279 Sum_probs=66.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-CC-----CCCHHHH
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLLDA 406 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~~-----~~~L~ea 406 (521)
||+|+||||+-.. .++...+.+...++ ...|+|+|.+ .+|-+.....-+.+++.. .+ ..++.||
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998654 34444444434443 4689999985 233211112223333321 12 2589999
Q ss_pred hcccCCcEEEEccCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 009950 407 VKVIKPTILIGSSGVG----------------------------RTFT--------KEVIEAMASFNEKPLILALSNPTS 450 (521)
Q Consensus 407 v~~vkptvLIG~S~~~----------------------------g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 450 (521)
+++ +|.+|=.-.+| |.|. .|+.+.|.++|++--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 998 89887443333 2221 48899999999999999999998
Q ss_pred CCCCC
Q 009950 451 QSECT 455 (521)
Q Consensus 451 ~~Ect 455 (521)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5554
No 171
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.58 E-value=5 Score=43.41 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=59.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc---CCCCCHHH
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLD 405 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~---~~~~~L~e 405 (521)
+...||+|+|.|-.|.++|++|... |. .+.++|.+-- ....+....+.... .......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~-----G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKL-----GA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHC-----CC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 5567999999999999999998753 53 5778886420 00111000111100 00111234
Q ss_pred HhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 009950 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 473 (521)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGS 473 (521)
-++. +|.+|=.++.+ .-.+++.++.. ..-||+ | .+| -++++.+.+.|--|||
T Consensus 74 ~~~~--~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~---s----~~e----~~~~~~~~~vIaITGT 125 (458)
T PRK01710 74 KLDG--FDVIFKTPSMR-IDSPELVKAKE--EGAYIT---S----EME----EFIKYCPAKVFGVTGS 125 (458)
T ss_pred Hhcc--CCEEEECCCCC-CCchHHHHHHH--cCCcEE---e----chH----HhhhhcCCCEEEEECC
Confidence 3443 78766433333 22455555544 346775 2 222 3444445578888997
No 172
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=84.50 E-value=9.4 Score=39.83 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=82.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ea 406 (521)
..+.++++.|+|.|..|..+|+.+... |+ +++.+|+.. .. .+... .+ ....+|.|+
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~~----~~---~~~~~-~~----~~~~~l~e~ 187 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRSR----KS---WPGVQ-SF----AGREELSAF 187 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCC----CC---CCCce-ee----cccccHHHH
Confidence 468899999999999999999999753 65 577777631 11 11101 11 123579999
Q ss_pred hcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEecCCCCCccee
Q 009950 407 VKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPFEY 480 (521)
Q Consensus 407 v~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~-~w-t~G~aifAsGSPf~pv~~ 480 (521)
++. .|+++=+-. .-+.|+++.++.|. +..++.=.|. .++--|+|+ ++ ..|+.--|.--=|++--.
T Consensus 188 l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~vVde~aL~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 188 LSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLAR----GVHVVEDDLLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred Hhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECCC----ccccCHHHHHHHHhcCCeeeEEecCCCCCCC
Confidence 987 898873321 12577888888885 5567776554 555555554 22 446544332222321111
Q ss_pred CCEEecc-ccccceeechhhhH
Q 009950 481 NGKVFVP-GQANNAYIFPGFGL 501 (521)
Q Consensus 481 ~Gr~~~p-~Q~NN~~iFPGigl 501 (521)
... .| =+..|+++-|=++-
T Consensus 259 ~~~--~pl~~~~nvi~TPHiag 278 (312)
T PRK15469 259 PPE--SPLWQHPRVAITPHVAA 278 (312)
T ss_pred CCC--ChhhcCCCeEECCcCCC
Confidence 100 11 24568888887763
No 173
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=84.46 E-value=1.6 Score=45.17 Aligned_cols=125 Identities=17% Similarity=0.204 Sum_probs=76.5
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 009950 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 415 (521)
Q Consensus 336 ~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvL 415 (521)
|+|||..|..+|-+|+. .++ ...|.|+|.+-=..++-.-+|.+..-.+.++..-..+--+.+++ .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 255 35899999842111111111332221121111001233467777 8999
Q ss_pred EEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEecCCCC
Q 009950 416 IGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSPF 475 (521)
Q Consensus 416 IG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G--~aifAsGSPf 475 (521)
|=+.+.+ |- +=+++++.+.+++..-+|+-.|||. +....-+++++.= +-+|++|.-.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~~~sg~p~~~viG~gt~L 141 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV---DILTYVAWKLSGFPKNRVIGSGTVL 141 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH---HHHHHHHHHHhCCCHHHEEeccchH
Confidence 8666653 21 1246778888899999999999996 4666666666521 3488887543
No 174
>PLN03139 formate dehydrogenase; Provisional
Probab=84.09 E-value=8.5 Score=41.62 Aligned_cols=145 Identities=16% Similarity=0.066 Sum_probs=86.0
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (521)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... . .+ . .+ .. ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~-~--~~-~~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE-L--EK-ET--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh-h--Hh-hc--CceecCCHHH
Confidence 4579999999999999999999999642 54 5777887532 0 01 0 00 00 0112357999
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEecCCCCCcce
Q 009950 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPFE 479 (521)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~-~w-t~G~aifAsGSPf~pv~ 479 (521)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++.-|+|+ ++ ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9987 898874321 12689999999996 5667776654 444444443 32 35665555543332211
Q ss_pred eCCEEeccccccceeechhhhHH
Q 009950 480 YNGKVFVPGQANNAYIFPGFGLG 502 (521)
Q Consensus 480 ~~Gr~~~p~Q~NN~~iFPGiglG 502 (521)
... ...--+..|+.+-|=++-.
T Consensus 323 lp~-d~pL~~~pNvilTPHiag~ 344 (386)
T PLN03139 323 APK-DHPWRYMPNHAMTPHISGT 344 (386)
T ss_pred CCC-CChhhcCCCeEEccccccc
Confidence 100 0001134688888877643
No 175
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=83.83 E-value=0.49 Score=56.65 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|++.||+++|||..|+-+++.|+.. |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 468889999999999999999999886 55211 13689999987
No 176
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=83.67 E-value=5.5 Score=41.30 Aligned_cols=120 Identities=24% Similarity=0.362 Sum_probs=74.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc----cc--CC---CCC
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH--EP---VNN 402 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~----~~--~~---~~~ 402 (521)
||.|+|| |..|..+|..++.. |+ ...++++|++--+ +.+..++.++.+ .. .. ..+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~-----g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKE-----DV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECCC
Confidence 7999998 99999999988763 54 2479999985211 112122211111 00 01 124
Q ss_pred HHHHhcccCCcEEEEccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCc
Q 009950 403 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGR 466 (521)
Q Consensus 403 L~eav~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~ 466 (521)
.+.+++ .|+.|=+.+.+ | .+-+++++.|.+++...+|+-.+||. .+..-.+++++ ..+
T Consensus 67 -~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~~ 140 (309)
T cd05294 67 -LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDKN 140 (309)
T ss_pred -HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCHH
Confidence 345777 89888665532 1 23567888888899999999999996 33334455443 123
Q ss_pred EEEecCC
Q 009950 467 AIFASGS 473 (521)
Q Consensus 467 aifAsGS 473 (521)
-+|++|.
T Consensus 141 ~viG~gt 147 (309)
T cd05294 141 RVFGLGT 147 (309)
T ss_pred HEeeccc
Confidence 4788875
No 177
>PRK06436 glycerate dehydrogenase; Provisional
Probab=83.38 E-value=14 Score=38.61 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=63.7
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (521)
+..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|+... .+.. + ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~r~~~-----~~~~---~-------~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYTRSYV-----NDGI---S-------SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEECCCCc-----ccCc---c-------cccCCHHH
Confidence 45799999999999999999998663 42 64 5888887521 0101 0 01247889
Q ss_pred HhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8876 888874321 13588899999986 677888777643
No 178
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=83.34 E-value=5.4 Score=41.16 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G-~~~eeA~~~i~lvDs~ 375 (521)
.||.|+|+|..|-+|+.-|... | ++ ..+|+++|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC
Confidence 5899999999999998888764 4 32 3678877763
No 179
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=83.27 E-value=2.6 Score=42.38 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.|++.+++..+...+..+++|+|+|.+|.+++..+.+. | .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~-----g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKA-----D-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 45566666545556678999999998888888777642 4 368888863
No 180
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=83.25 E-value=11 Score=39.30 Aligned_cols=106 Identities=11% Similarity=0.260 Sum_probs=72.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ea 406 (521)
..|.++++.|+|-|..|-.+|+++. ++ |+ +|+.+|+.+- .. + ..| ...+|.|+
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~-~f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~el 193 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQ-AF----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEEL 193 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHh-hc----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHH
Confidence 4689999999999999999999885 33 64 6888888531 10 0 011 12479999
Q ss_pred hcccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc--cCCcEE
Q 009950 407 VKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 468 (521)
Q Consensus 407 v~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~w--t~G~ai 468 (521)
++. .|+++=.- ..-+.|+++.++.|. +..++.=.|. .++-=|+|+-. ..|+.-
T Consensus 194 l~~--sDvv~lh~Plt~~T~~li~~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 194 LKT--SDIISIHAPLNEKTKNLIAYKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hhc--CCEEEEeCCCCchhhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 987 89887431 223799999999996 6777776555 55555544422 356654
No 181
>PRK06487 glycerate dehydrogenase; Provisional
Probab=83.23 E-value=8.6 Score=40.08 Aligned_cols=136 Identities=16% Similarity=0.154 Sum_probs=82.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ea 406 (521)
..|.++++.|+|.|..|..+|+++. ++ |+ +++.+|+.+ ..+ . + ...+|.|+
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~-~f----gm-------~V~~~~~~~-----~~~-------~-~----~~~~l~el 194 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAE-AF----GM-------RVLIGQLPG-----RPA-------R-P----DRLPLDEL 194 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHh-hC----CC-------EEEEECCCC-----Ccc-------c-c----cccCHHHH
Confidence 3688999999999999999999985 33 64 577777642 101 0 0 12379999
Q ss_pred hcccCCcEEEEc----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc-c-cCCcEEEecCCCCC--cc
Q 009950 407 VKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGSPFD--PF 478 (521)
Q Consensus 407 v~~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~-w-t~G~aifAsGSPf~--pv 478 (521)
++. .|+++=. ...-|.|+++.+..|. +..++.=.|. .++--|+|+- + .+|+.--|.=-=|. |.
T Consensus 195 l~~--sDiv~l~lPlt~~T~~li~~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 265 (317)
T PRK06487 195 LPQ--VDALTLHCPLTEHTRHLIGARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPP 265 (317)
T ss_pred HHh--CCEEEECCCCChHHhcCcCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 987 8998843 1224799999999996 6677776665 4444444432 1 35665433211111 11
Q ss_pred eeCCEEeccccccceeechhhhH
Q 009950 479 EYNGKVFVPGQANNAYIFPGFGL 501 (521)
Q Consensus 479 ~~~Gr~~~p~Q~NN~~iFPGigl 501 (521)
. .+....--+..|+++-|=++-
T Consensus 266 ~-~~~pl~~~~~pnvilTPHia~ 287 (317)
T PRK06487 266 V-NGNPLLAPDIPRLIVTPHSAW 287 (317)
T ss_pred C-CCCchhhcCCCCEEECCcccc
Confidence 1 111111003568999998773
No 182
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=82.88 E-value=2.6 Score=43.39 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=75.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC-CccccCCccCCchhchhhcccc-CCCCCHHHHhcccC
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 411 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~-GLi~~~R~~~l~~~k~~fa~~~-~~~~~L~eav~~vk 411 (521)
|.|+|||..|..+|-.++. .|+ ...+.++|.+ .++..-.. +|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~~-DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDAL-DLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHH-hHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999976654 365 2579999973 22111111 2433332221110 11134 456776
Q ss_pred CcEEEEccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEecCCC
Q 009950 412 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 474 (521)
Q Consensus 412 ptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt--~G~aifAsGSP 474 (521)
.|++|=+.+.+ |- +=+++.+.+.+++..-+|+-.|||. ++...-+++++ +-+-+|++|.-
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt~ 142 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGTL 142 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCCc
Confidence 88887555443 21 1246777888899999999999995 56666666653 23447887643
No 183
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.87 E-value=1.6 Score=39.36 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=28.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
||+++|+|.-|..+|+.|+.. |+ ++|.++|.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCC
Confidence 689999999999999999875 65 7899999873
No 184
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=82.80 E-value=1.8 Score=39.93 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
+|||+|+|.||+..|..+.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999983 23 4688886643
No 185
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.76 E-value=1.4 Score=44.19 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=63.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhcc---
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~--- 395 (521)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+=+ ..+.- +++-..|..-+.
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~V-~~sNlnRq~~~~~~diG~~Kae~~~~~l 74 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDVV-CVSNLNRQIHALLSTVGKPKVEVMAERI 74 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-CchhhcchhCcChhhCCCcHHHHHHHHH
Confidence 357889999999999999999999875 75 78999998732 22110 001111111111
Q ss_pred -c-cCC---------C--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 396 -E-HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 396 -~-~~~---------~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
+ .+. + .++.+.+. -++|++|-+... .-.+-.+-..+..+..|+|.+++
T Consensus 75 ~~inP~~~V~~~~~~i~~~~~~~l~~-~~~D~VvdaiD~--~~~k~~L~~~c~~~~ip~I~s~g 135 (231)
T cd00755 75 RDINPECEVDAVEEFLTPDNSEDLLG-GDPDFVVDAIDS--IRAKVALIAYCRKRKIPVISSMG 135 (231)
T ss_pred HHHCCCcEEEEeeeecCHhHHHHHhc-CCCCEEEEcCCC--HHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 010 1 13344442 258988877542 22344566667777899999886
No 186
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.46 E-value=3.1 Score=42.66 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999999764 4 457777774
No 187
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.45 E-value=5.1 Score=41.70 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+-.-+|-.|++.=++-.|.+|++.++|++|.+. .|--+|.||.. .|. .+.+|+|+
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~------------ 191 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF------------ 191 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC------------
Confidence 445678888899999999999999999999764 67778877754 243 35555542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 ------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred ------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1257777777 99999999999999999996
No 188
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.44 E-value=2.6 Score=46.38 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.|++.+++..+.++++.+++|+|+|.+|.+++..+.+. |. +++++|+.
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~~-----G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLARA-----GA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 47788888888899999999999998888887777642 52 57777763
No 189
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.27 E-value=5.2 Score=41.90 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-+|++.=|+-.+.+|+.+++|++|.+. .|.-+|.||.. .|.+. .-.+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 4667788888899999999999999999765 57777777754 22110 0124444432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.++|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1468888887 99999999999999999997
No 190
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.22 E-value=5.7 Score=41.37 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-+|++.=++-.+.+++.++++++|-+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~A-------tVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RHA-------TVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4567788888899999999999999999764 57777777754 232 35555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.++|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 191
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=82.19 E-value=0.63 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~ 352 (521)
+...+.||||+|||.||++.|..|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999985
No 192
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.05 E-value=1.4 Score=46.51 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=64.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhcc---
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~--- 395 (521)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+= |..+.- +++-..|..-|.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDT-VDLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-EcccccccCcccChhHCCChHHHHHHHHH
Confidence 567889999999999999999999775 76 7899999973 222110 001111111111
Q ss_pred -cc----------CCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 396 -EH----------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 396 -~~----------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
.. ... .++.+.++. .|++|-++. ..=++.++..++.....|.|++-+
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d--~~~~r~~~n~~c~~~~ip~v~~~~ 151 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSD--NFDTRHLASWAAARLGIPHVWASI 151 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEEE
Confidence 00 011 134455655 788877664 233556677777777788888654
No 193
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=81.80 E-value=6.8 Score=40.01 Aligned_cols=93 Identities=15% Similarity=0.239 Sum_probs=56.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCCCCCHHHHhccc-
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 410 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~eav~~v- 410 (521)
||.|+|.|..|..+|+.|... | .+++++|+.. .+ .. .++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---VE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999999763 4 3577777741 11 11 12211 11235677777765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (521)
++|++|=+-. .....+++++.+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3676653322 33456666665543 34567888887633
No 194
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.65 E-value=1.4 Score=50.52 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999886 75 78999998643
No 195
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.60 E-value=5.7 Score=41.46 Aligned_cols=83 Identities=27% Similarity=0.357 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-.|++.=++-.|.+++..++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456778888889999999999999999975 467778877754 242 35555542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
..+|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1258888887 99999999999999999996
No 196
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.51 E-value=6.2 Score=41.07 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+-.-+|-.|++.=++-.|.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------ 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------ 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC------------
Confidence 345677888888899999999999999999764 67778777754 243 35555442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
..+|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 190 ------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 ------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1258888887 99999999999999999997
No 197
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.25 E-value=5.7 Score=41.46 Aligned_cols=97 Identities=25% Similarity=0.390 Sum_probs=70.3
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 009950 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (521)
+-.-+|-.|++.=|+-.|.+|+.+++||+|-+. .|.-+|.||.. .|.+. ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 345677888888899999999999999999764 57777777754 22110 0134444331
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009950 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (521)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (521)
.++|.+.++. +|++|-..+.++.+++|+|+ +.-||+=-
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik------~GavVIDv 228 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA------EKAVIVDV 228 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 1358888887 99999999999999999997 45566543
No 198
>PRK07680 late competence protein ComER; Validated
Probab=81.03 E-value=3.3 Score=41.55 Aligned_cols=98 Identities=12% Similarity=0.248 Sum_probs=56.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkp 412 (521)
+|.|+|+|..|..+|..+.+. |.- ...+++++|++ .. ........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999988653 420 12467877763 11 1111111110 00112456676665 7
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 009950 413 TILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (521)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (521)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 7765 33333 3467777777643 24567788888663
No 199
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.71 E-value=2.4 Score=44.27 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=52.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc--cccCC--ccCCchhchhhccccCCCCCHHHHh
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSR--KDSLQHFKKPWAHEHEPVNNLLDAV 407 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL--i~~~R--~~~l~~~k~~fa~~~~~~~~L~eav 407 (521)
.||.|+|||+-|..+|..+.+. | . ..+|..|..-. |.+.+ .+.++. ...+.....-..++.+++
T Consensus 8 mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l~~~i~~t~d~~~a~ 75 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGN-DVVLSDTLRATTDFAEAA 75 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCC-CcccCCCeEEECCHHHHH
Confidence 7899999999999999988753 3 1 23554332210 00110 001110 000000001124677777
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 009950 408 KVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (521)
+. +|++| ++.+. -+.+++++.++.+ .++.+|..++|-.
T Consensus 76 ~~--aDlVi-lavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 76 NC--ADVVV-MGVPS-HGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred hc--CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 65 66554 33322 4677888887753 3343566777754
No 200
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.68 E-value=6.6 Score=41.16 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-.|++.=|+-.+.+|+.++++|+|.+. -|.-+|.||... +.. ...-+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 3567788888899999999999999999764 577777777541 110 00124444432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
..+|.+.+++ +|++|-..+.++.++.|+|+ +.-||+=-.
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gaiVIDvG 233 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS------EGATVIDVG 233 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEcc
Confidence 1358888887 99999999999999999997 455665444
No 201
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.30 E-value=17 Score=37.16 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=58.1
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc--
Q 009950 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-- 396 (521)
Q Consensus 319 l~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-- 396 (521)
+.|++..+. ..+++++|.|+|+.|...+.+.. + .|. ++++.+|+. .+| +.-.++-=|..
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~~----~~~---~~~a~~lGa~~vi 219 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADVS----PRS---LSLAREMGADKLV 219 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeCC----HHH---HHHHHHcCCcEEe
Confidence 445554433 36889999999988877665443 2 253 567777753 111 11111100110
Q ss_pred cCCCCCHHHHhccc-CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh
Q 009950 397 HEPVNNLLDAVKVI-KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 460 (521)
Q Consensus 397 ~~~~~~L~eav~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~ 460 (521)
.....++.+.++.- ++|++|=+++.+ ..-++.++.|+. .-.|.-+..+...++..+.+.+
T Consensus 220 ~~~~~~~~~~~~~~g~~D~vid~~G~~-~~~~~~~~~l~~---~G~iv~~G~~~~~~~~~~~~~~ 280 (343)
T PRK09880 220 NPQNDDLDHYKAEKGYFDVSFEVSGHP-SSINTCLEVTRA---KGVMVQVGMGGAPPEFPMMTLI 280 (343)
T ss_pred cCCcccHHHHhccCCCCCEEEECCCCH-HHHHHHHHHhhc---CCEEEEEccCCCCCccCHHHHH
Confidence 00112344444322 378888877643 223456666652 2233333333333555555443
No 202
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.17 E-value=14 Score=41.24 Aligned_cols=173 Identities=16% Similarity=0.101 Sum_probs=96.6
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHH
Q 009950 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (521)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (521)
..++|.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4556665321 12445566666666553 24568899999999999999999998643
Q ss_pred hcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccC----CCCCCCHHHHHH
Q 009950 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEA 432 (521)
Q Consensus 357 ~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~ 432 (521)
|+ +++.+|+.. .+ +... .+ . -...+|.|+++. .|+++=.-. .-+.|+++.++.
T Consensus 163 --G~-------~V~~~d~~~----~~-~~~~----~~--g-~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SP-ERAA----QL--G-VELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----Ch-hHHH----hc--C-CEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 54 688888742 11 1000 00 0 011278898886 888764321 126888999988
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHH
Q 009950 433 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGL 503 (521)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~ 503 (521)
|. +..++.=.|.-..--|..--+|++ .|+.-.|.=-=|++--..... --+..|+.+-|=+|-..
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~p--L~~~~nvilTPHia~~t 283 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSP--LFELPNVVVTPHLGAST 283 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCch--hhcCCCeeEcCccccch
Confidence 86 567777777644322332333333 455533311111100000111 12345888888776433
No 203
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=80.13 E-value=4.1 Score=36.58 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=51.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhccc
Q 009950 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v 410 (521)
.||+++|+ |-.|..|++.+.+. .|+ +=...+|++.=-..+. ++.+.-........-..+|.++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~- 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE- 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc-
Confidence 38999999 99999999998763 243 3467788876111111 1111100000000112567777777
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (521)
+||+|=+|.+. ...+.++...++ ..|+|..
T Consensus 68 -~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 -ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp --SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred -CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 88888777532 334455555444 4566654
No 204
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=79.87 E-value=11 Score=39.38 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=66.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc---CCCCCHHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~---~~~~~L~ea 406 (521)
.-.++.|+|+|.-|-.-++.+... . . -++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999877766555332 1 2 3788988873 222 222222222111 224689999
Q ss_pred hcccCCcEEEEcc-CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHHH
Q 009950 407 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPTS-QSECTAEE 458 (521)
Q Consensus 407 v~~vkptvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~-~~Ectpe~ 458 (521)
+++ .||+|-++ +....|..++++ +..-|-++.-.+. +.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 986 99999765 323478888874 4567888875443 68999864
No 205
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=79.80 E-value=4.1 Score=41.81 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=57.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc-----hhchhhccc-cCCCCCHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHE-HEPVNNLLD 405 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~-----~~k~~fa~~-~~~~~~L~e 405 (521)
.||.|+|+|..|..+|..+.+. | .+++++|+..-...-+...+. ..+..+... .....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999999764 4 368888874211000000010 000000000 0001234 4
Q ss_pred HhcccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCC
Q 009950 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQ 451 (521)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~ 451 (521)
+++. +|++|=+... -..+++++.+... .+..+|..+.|....
T Consensus 70 ~~~~--~D~vil~vk~--~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALAT--ADLVLVTVKS--AATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hccC--CCEEEEEecC--cchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 5554 8888844332 2357888888754 455678888897643
No 206
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=79.70 E-value=6.7 Score=42.28 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-+|++.-|+..+.+|+.+++||+|-+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC--------------
Confidence 4566777888899999999999999999764 56677777754 242 35556432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.++|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1468888887 99999999999999999997
No 207
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=79.52 E-value=11 Score=42.07 Aligned_cols=35 Identities=23% Similarity=0.097 Sum_probs=27.1
Q ss_pred eccccccceeechhhhHHHHHhCCCccCHHHHHhh
Q 009950 485 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (521)
Q Consensus 485 ~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (521)
..||.++|-+.+|.+.-+..+...--++.+.+.+|
T Consensus 185 d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~a 219 (503)
T TIGR02279 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAA 219 (503)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 35788999999999988888877776766666554
No 208
>PRK06153 hypothetical protein; Provisional
Probab=79.28 E-value=2.3 Score=46.18 Aligned_cols=99 Identities=25% Similarity=0.401 Sum_probs=59.9
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHHHH-HHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccce
Q 009950 255 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELL-AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHR 333 (521)
Q Consensus 255 g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL-~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~r 333 (521)
+..|-.+.++++.-+.-.-||-..|..+ .++.-|+.. ++ ++=.+||== =|++.= ++ +. ..-.+|++.|
T Consensus 110 ~~~y~~y~~k~~~Y~~ii~~~A~~~~~~--~~~~~~~~~~~~--~~~svf~y~--dt~s~R-~~-i~---~~q~kL~~~~ 178 (393)
T PRK06153 110 GGGYADYYHKMTTYATIISGPARVLDPT--ASARTFRVIEDA--EEDSVFNYP--DTASSR-AG-IG---ALSAKLEGQR 178 (393)
T ss_pred CCCcccHHHHHHHHHHHhcchhhhcCCC--CCCcccCCCCCc--ccCCceehh--hhhccc-cC-hH---HHHHHHhhCc
Confidence 3567788888887777766664444332 234444432 21 122333311 011100 00 11 1125788999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
|+|+|+|..|.-|+++|+.. |+ ++|.++|.+
T Consensus 179 VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D 209 (393)
T PRK06153 179 IAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD 209 (393)
T ss_pred EEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 99999999999999999885 65 789999987
No 209
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=79.22 E-value=4.9 Score=44.68 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=52.3
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC---CCCC-----CHHHHhcccCCcEEE-ecCCCCCccee
Q 009950 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QSEC-----TAEEAYTWSKGRAIF-ASGSPFDPFEY 480 (521)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~~Ec-----tpe~A~~wt~G~aif-AsGSPf~pv~~ 480 (521)
.+|+.+|...+. .++.+-+.+-.++-+|=+-+-.-||.. +.|+ |.++++++.. .++ .-|. .||..
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lgk--~pv~v 185 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWGK--TPVRA 185 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcCC--ceEEe
Confidence 468888874332 244443433333344446677777643 2232 2344443311 000 1111 12222
Q ss_pred CCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhh
Q 009950 481 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (521)
Q Consensus 481 ~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (521)
+ ..||-.+|-+.+|.+.=+..+...--++.+-+..|
T Consensus 186 ~---d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~a 221 (507)
T PRK08268 186 K---DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAI 221 (507)
T ss_pred c---CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 1 34778999999998888877776665655544433
No 210
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=79.21 E-value=7 Score=43.09 Aligned_cols=135 Identities=11% Similarity=0.012 Sum_probs=79.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHH-HHH-hcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhc
Q 009950 332 HRFLFLGA-GEAGTGIAELIALE-ISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~-~~~-~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~ 408 (521)
.||.|+|| |..|..+|-.|+.. +.. .+|+ -..++++|.+-=...+-.-+|.+-.-++-++..-..+-.+.++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 79999999 99999999988653 100 0133 2468888874222111111133322233221110123456677
Q ss_pred ccCCcEEEEccCCC---CC-----------CCHHHHHHHHc-CCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEec
Q 009950 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 471 (521)
Q Consensus 409 ~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~-~~erPIIFaLSNPt~~~Ectpe~A~~wt~--G~aifAs 471 (521)
+ .|++|=+.+.+ |- +=+++.+.+.+ .+..-||+-.|||- ....--+++++. -.-+|.|
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViGt 250 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFHA 250 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEEe
Confidence 7 89988666653 21 12467778888 58999999999995 455555555552 2457777
Q ss_pred CCCCC
Q 009950 472 GSPFD 476 (521)
Q Consensus 472 GSPf~ 476 (521)
|.=.+
T Consensus 251 gT~LD 255 (444)
T PLN00112 251 LTRLD 255 (444)
T ss_pred eccHH
Confidence 75443
No 211
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.13 E-value=8.9 Score=38.68 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=26.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
..||.|+|+|..|.+||+.++.. |.- ...+++++|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r 38 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNR 38 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECC
Confidence 35899999999999999988653 410 1245777765
No 212
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.00 E-value=13 Score=37.72 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+||.|+|+|..|.+||..++.. | .+++++|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999998763 5 368888864
No 213
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.96 E-value=8.2 Score=40.48 Aligned_cols=91 Identities=18% Similarity=0.314 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 009950 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (521)
Q Consensus 311 aaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (521)
.-+|-.|++.=++-.|.+++.+++||+|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 3567788888889999999999999999764 67778877754 243 34555332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009950 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (521)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (521)
..+|.+.+++ +|++|-..+.++.|+.++|+ +..||+=-
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVIDv 229 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK------PGAVVVDV 229 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 1357888887 99999999999999999997 45566433
No 214
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=78.90 E-value=1.8 Score=46.36 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=62.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhccc--
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~~-- 396 (521)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+= |..+.- +++-..|..-+++
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFDV-VDESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCE-ecCcccccccccChhcCCChHHHHHHHHH
Confidence 578899999999999999999999875 75 6899999762 222110 0111112111110
Q ss_pred --c----------CCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 009950 397 --H----------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (521)
Q Consensus 397 --~----------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (521)
. ..+ .++.+.++. .|++|-++.. .=++-++..++.....|.|++-
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDN--FATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEE
Confidence 0 011 134555655 7888876542 2245556677766778887753
No 215
>PRK06932 glycerate dehydrogenase; Provisional
Probab=78.86 E-value=15 Score=38.38 Aligned_cols=139 Identities=16% Similarity=0.195 Sum_probs=83.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ea 406 (521)
..|.++++.|+|-|..|-.+|+++. ++ |+ +++.+|+.. .... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~-~f----g~-------~V~~~~~~~------~~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQ-AL----GM-------KVLYAEHKG------ASVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCc------cccc---c-------cccCCHHHH
Confidence 4688999999999999999999874 33 65 466666531 0000 0 113479999
Q ss_pred hcccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc--cCCcEEEecCCCCC--cc
Q 009950 407 VKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSPFD--PF 478 (521)
Q Consensus 407 v~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~w--t~G~aifAsGSPf~--pv 478 (521)
++. .|+++=.- ..-|.|+++.++.|. +..++.=.|. .++--|+|+.. .+|+.--|.--=|+ |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 998 99988431 223799999999996 6677776665 44444444421 34654433322221 11
Q ss_pred eeCCEEec-cccccceeechhhhHH
Q 009950 479 EYNGKVFV-PGQANNAYIFPGFGLG 502 (521)
Q Consensus 479 ~~~Gr~~~-p~Q~NN~~iFPGiglG 502 (521)
.-+.--.. --+..|+++-|=++-.
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~~ 290 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAWA 290 (314)
T ss_pred CCCChhhHhhcCCCCEEECCccccC
Confidence 11110000 0146799999977743
No 216
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.80 E-value=17 Score=36.22 Aligned_cols=47 Identities=34% Similarity=0.437 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 316 Agll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
+..+.|++..+. ..+.+++|+|+|+.|...+.+. ++ .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 334556655544 3788999999998776655543 32 364 46887764
No 217
>PLN02527 aspartate carbamoyltransferase
Probab=78.34 E-value=59 Score=34.08 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceec--cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 009950 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (521)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GA 339 (521)
+.+.+..+ .+| .+++ -.-.+......+ +.+| .++||.| |+...==+=+||=++.-.+..| ++++.||+++|.
T Consensus 86 ~~Dta~vl-s~y-~D~i-viR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD 159 (306)
T PLN02527 86 LEDTIRTV-EGY-SDII-VLRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGD 159 (306)
T ss_pred HHHHHHHH-HHh-CcEE-EEECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECC
Confidence 33444433 456 4433 344554444333 3444 4789999 4343444556777777666666 599999999998
Q ss_pred chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-C---CCCCHHHHhcccCCcEE
Q 009950 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVKVIKPTIL 415 (521)
Q Consensus 340 GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~---~~~~L~eav~~vkptvL 415 (521)
+.=+ -+++-++.++.+-.|+ .|.++-.+|+- +++....++++. . ...++.|++++ +||+
T Consensus 160 ~~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 222 (306)
T PLN02527 160 LANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVL 222 (306)
T ss_pred CCCC-hhHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEE
Confidence 7422 2455554544332243 57777777761 122222233321 1 13689999998 9999
Q ss_pred EEccCC
Q 009950 416 IGSSGV 421 (521)
Q Consensus 416 IG~S~~ 421 (521)
.-.+.+
T Consensus 223 yt~~~q 228 (306)
T PLN02527 223 YQTRIQ 228 (306)
T ss_pred EECCcc
Confidence 987654
No 218
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.25 E-value=16 Score=40.88 Aligned_cols=174 Identities=18% Similarity=0.138 Sum_probs=94.3
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHH
Q 009950 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (521)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (521)
..++|.|--- +.+|=-++|.+|+..|- .|..|.++++.|+|.|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4555555321 23444556666665442 35578999999999999999999998542
Q ss_pred hcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEcc----CCCCCCCHHHHHH
Q 009950 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 432 (521)
Q Consensus 357 ~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~ 432 (521)
|+ +++.+|+.. .... . ..+ ......+|.|+++. .|+++=.- ..-+.|+++.++.
T Consensus 161 --G~-------~V~~~d~~~--~~~~---~----~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPER---A----EQL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--ChhH---H----Hhc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 54 588888741 1110 0 000 00112478888876 78776321 1235788888888
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEeccccccceeechhhhHHH
Q 009950 433 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGL 503 (521)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~ 503 (521)
|. +..++.=.|.-.---|..--+|++ .|+.-.|.=-=|++--.... .--+..|+.+-|=+|-..
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t 282 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGAST 282 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccH
Confidence 85 566777666643222222233333 45544331111110000010 112446778877766433
No 219
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=78.01 E-value=19 Score=37.82 Aligned_cols=142 Identities=15% Similarity=0.191 Sum_probs=81.2
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (521)
|..|.++++.|+|.|..|..+|+.+..++ |+ ++...|+.. + .+ ....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~---~--~~----~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH---H--KE----AEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC---c--hh----hHHhc---CcEecCHHH
Confidence 45789999999999999999999875333 54 455566521 0 00 00011 112347999
Q ss_pred HhcccCCcEEEEcc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEecCCCCC--c
Q 009950 406 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFD--P 477 (521)
Q Consensus 406 av~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~-~w-t~G~aifAsGSPf~--p 477 (521)
+++. .|+++=.- ..-|.|+++.++.|. +..++.=.|. .++--|+|+ ++ .+|+.-.|.=-=|+ |
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP 267 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFINAGR----GPVVDENALIAALQKGEIHAAGLDVFEQEP 267 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCC
Confidence 9987 89876321 112689999999996 5667775554 445444443 22 45655433211111 1
Q ss_pred ceeCCEEeccccccceeechhhhHH
Q 009950 478 FEYNGKVFVPGQANNAYIFPGFGLG 502 (521)
Q Consensus 478 v~~~Gr~~~p~Q~NN~~iFPGiglG 502 (521)
...+. . --...|+.+-|=+|-.
T Consensus 268 ~~~~~-p--L~~~~nvilTPHia~~ 289 (323)
T PRK15409 268 LSVDS-P--LLSLPNVVAVPHIGSA 289 (323)
T ss_pred CCCCc-h--hhcCCCEEEcCcCCCC
Confidence 10010 0 1134688888877643
No 220
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=77.93 E-value=2.6 Score=39.16 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=20.9
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 335 v~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+|+|||.||+..|..|.+. |+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-----g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-----GI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-----T---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhC-----CC------CcEEEEeCC
Confidence 6899999999999877553 65 348899987
No 221
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=77.87 E-value=6.1 Score=41.74 Aligned_cols=108 Identities=21% Similarity=0.377 Sum_probs=68.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC-CccccCCccCCchhchhhc-ccc--CCCCCHHHHh
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWA-HEH--EPVNNLLDAV 407 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~-GLi~~~R~~~l~~~k~~fa-~~~--~~~~~L~eav 407 (521)
.||.++|||..|...|-+|+. .++ -+.+.|+|-. +...-...| |.+.. .+. .+. ....+ -+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~-----~~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGL-----GSELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----ccc-----cceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999999988843 244 2479999987 221111111 32221 221 110 01023 4557
Q ss_pred cccCCcEEEEccCC---CC-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc
Q 009950 408 KVIKPTILIGSSGV---GR-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 462 (521)
Q Consensus 408 ~~vkptvLIG~S~~---~g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~w 462 (521)
++ +|+.|=+.+. +| ..-+++.+++++++.+.||+-.|||. |..+|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 76 8887744433 34 14467888999999999999999998 66665
No 222
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=77.77 E-value=11 Score=45.61 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCC---------cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc------------Cc---EE
Q 009950 315 LAGVVAALKLIGGT---------LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---IC 370 (521)
Q Consensus 315 LAgll~Alk~~g~~---------L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~------------~~---i~ 370 (521)
++.+.+|++..|.. +.-.+|||.|+|..|.|.++++...-.+ =++.++-+ ++ +|
T Consensus 178 ~~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y 255 (1042)
T PLN02819 178 LAAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVY 255 (1042)
T ss_pred HHHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceee
Confidence 34456666555432 3358999999999999999988654111 02222211 11 22
Q ss_pred E--EecCCccccCCccCCchhchhhccccCCC-CCHH-HHhcccCCcEEEEcc----CCCCCCCHH-HHHHHHc
Q 009950 371 L--VDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLL-DAVKVIKPTILIGSS----GVGRTFTKE-VIEAMAS 435 (521)
Q Consensus 371 l--vDs~GLi~~~R~~~l~~~k~~fa~~~~~~-~~L~-eav~~vkptvLIG~S----~~~g~Ft~e-vv~~Ma~ 435 (521)
. +.+.-.+.....+.-=+.+..|+++ +.. ..+. +++.. .|+|||+= ..|.++|+| +++.|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~f~~~~y~~~P-e~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 256 GCVVTSQDMVEHKDPSKQFDKADYYAHP-EHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred eeecChHHHhhccCCccccchhhhccCc-hhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 1 1111111110000000112223332 333 3454 68877 99999984 234579999 8888874
No 223
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=77.76 E-value=4.6 Score=42.78 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009950 333 RFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (521)
||.|+|||+-|+++|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999976
No 224
>PRK07411 hypothetical protein; Validated
Probab=77.68 E-value=2.3 Score=45.58 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=63.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhccc--
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~~-- 396 (521)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+ .|..+.- +++-..|..-|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D-~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD-VVDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC-EecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 578899999999999999999999886 65 789999987 2222210 0111111111110
Q ss_pred ---c---------CCC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009950 397 ---H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (521)
Q Consensus 397 ---~---------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (521)
. ... .+..+.++. .|++|-++.. .=++.+|..++.....|.|++
T Consensus 102 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 102 LEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDN--FPTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 0 011 134455554 7888877652 236677777777777888865
No 225
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=77.45 E-value=8.3 Score=41.34 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 009950 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (521)
Q Consensus 310 TaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (521)
-.-+|-+|++.=|+-.|.+|+.+++||+|-+. .|.-+|.||.. .|. .+.+|.++
T Consensus 193 ~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~------------- 247 (345)
T PLN02897 193 FVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF------------- 247 (345)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------------
Confidence 34667788888889999999999999999764 57777777654 243 34455442
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHH
Q 009950 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (521)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (521)
.++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 248 -----------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 248 -----------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357888887 99999999999999999997
No 226
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.34 E-value=5.4 Score=37.95 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=25.1
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++++.+++|.|| |..|..+++.+++ .|. +++++++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467789999997 5566666666643 253 58888885
No 227
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=77.34 E-value=3.1 Score=41.12 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (521)
-+|+|+|||.||+..|..|.+. |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 4799999999999999998764 65 48888886543
No 228
>PRK07340 ornithine cyclodeaminase; Validated
Probab=77.22 E-value=17 Score=37.60 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=66.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCC--CCCHHHH
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 406 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~--~~~L~ea 406 (521)
....+++|+|+|..|...++.+... .++ ++|+++|+. .++ ...+...+.....+ ..++.++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999999988888653 243 578888874 222 22222222111111 3578999
Q ss_pred hcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 009950 407 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (521)
Q Consensus 407 v~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~A 459 (521)
+++ .|++|-++... .+|+. +++ +.--|-++.-.+ .+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC------CCCEEEecCCCCCCcccCCHHHH
Confidence 986 99999876543 36654 332 455677776432 4789998643
No 229
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=76.64 E-value=12 Score=38.39 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=56.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCCCCCHHHHhcccC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 411 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~eav~~vk 411 (521)
||.|+|.|..|..+|+.+... | .+++++|++. ++ ... ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----G-------HEVVGYDVNQ----EA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----C-------CEEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999998653 4 3577777631 11 111 1111 122357778777643
Q ss_pred -CcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 009950 412 -PTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (521)
Q Consensus 412 -ptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (521)
+|++|=+ .+.....+++++.+.. ..+..+|.=+|+-.
T Consensus 59 ~advVi~~-vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWVM-VPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEEE-ecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 5666532 2233366677666543 24567888887643
No 230
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=76.32 E-value=2.5 Score=43.92 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++|++.+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999999886 75 789999987
No 231
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=76.08 E-value=5.3 Score=32.55 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~ 379 (521)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999998553 4 6789999887766
No 232
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=75.84 E-value=7.9 Score=39.70 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=60.0
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch-hchhhcc-ccCCCCCHHH
Q 009950 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWAH-EHEPVNNLLD 405 (521)
Q Consensus 329 L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~-~k~~fa~-~~~~~~~L~e 405 (521)
+++.+|+|.|| |-.|..+++.|++. | .+++.+|++---.....+.+.. .+..+.. +..+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 34678999996 88888888888763 4 3578787653100000000000 0011111 2222346778
Q ss_pred HhcccCCcEEEEccCCCCC----------------CCHHHHHHHHcCC-CCcEEEEcC
Q 009950 406 AVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 446 (521)
Q Consensus 406 av~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIFaLS 446 (521)
+++..+||++|=+.+.... .+..+++++.+.+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888899999987764311 1345566666544 457888654
No 233
>PRK06823 ornithine cyclodeaminase; Validated
Probab=75.45 E-value=19 Score=37.74 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=68.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCCHHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 406 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~L~ea 406 (521)
.-.++.++|+|.-+...++.++.. .. -++|++.|+. .++ ...+...+.+. .....+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~------i~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TD------CRQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 357999999999988888877653 12 3688888773 222 22222222111 1123689999
Q ss_pred hcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 009950 407 VKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (521)
Q Consensus 407 v~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~A 459 (521)
++. +||++-+++. ..+|..++++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 987 9999976533 3478888886 455677786433 3689998754
No 234
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=75.42 E-value=60 Score=33.38 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=24.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
..++++|+|+|..|+..+.++...+ |. .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 4789999999988877766664421 31 36887776
No 235
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.30 E-value=8.2 Score=41.13 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=28.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+++.+++|.|+|..|.++|+.+.+. |. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~-----G~-------~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKL-----GA-------NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHC-----CC-------EEEEEcCC
Confidence 5678999999999999998888763 63 58888864
No 236
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=75.24 E-value=12 Score=38.73 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=67.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~e 405 (521)
.-.++.|+|+|.-|..-++.++.. ..+ ++|.+.|+. .++ ...+.+.+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FDH---ARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999988887777663 233 678877773 222 33333333321 122468999
Q ss_pred HhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHHH
Q 009950 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 459 (521)
Q Consensus 406 av~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~A 459 (521)
++++ .||++-+++. ..+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9988 9999976543 24788888863 2345554 33224789998743
No 237
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=75.22 E-value=5.4 Score=44.09 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=62.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc---ccCCCCCHHHHhcc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKV 409 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~---~~~~~~~L~eav~~ 409 (521)
+|-|+|.|..|.++|..|.+. |. ++++.|+. .++ .++..+.-.. ......++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999999763 53 58888873 222 1111111000 01134689999976
Q ss_pred c-CCcEEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 009950 410 I-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (521)
Q Consensus 410 v-kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (521)
. +|+++| +.-+++..++++++.+.. ..+..||.=+||=.
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 4 588555 333455677888877654 35678888899843
No 238
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.09 E-value=29 Score=37.61 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=100.5
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHH
Q 009950 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (521)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (521)
..++|+|--- +.+|=-+++.+|+..|- .|..|.+.++.|+|.|..|..+|+.+...
T Consensus 97 ~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f--- 173 (409)
T PRK11790 97 RGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL--- 173 (409)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC---
Confidence 5777777432 23455567777777653 24568999999999999999999988542
Q ss_pred hcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccC----CCCCCCHHHHHH
Q 009950 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEA 432 (521)
Q Consensus 357 ~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~ 432 (521)
|+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=.-- .-+.|+++.++.
T Consensus 174 --Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~~ 228 (409)
T PRK11790 174 --GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELAL 228 (409)
T ss_pred --CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHhc
Confidence 64 588888631 1 0010 01 123479999987 888774311 126899999999
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEecCCC-C--CcceeCCEEec-cccccceeechhhhHHH
Q 009950 433 MASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSP-F--DPFEYNGKVFV-PGQANNAYIFPGFGLGL 503 (521)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~~Ectpe~A~-~w-t~G~aifAsGSP-f--~pv~~~Gr~~~-p~Q~NN~~iFPGiglG~ 503 (521)
|. +..++.-.|. .++--|+|+ +. ..|+ |.+-|.- | +|..-+..... --+..|+++-|=+|-..
T Consensus 229 mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t 297 (409)
T PRK11790 229 MK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGST 297 (409)
T ss_pred CC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCH
Confidence 96 5667776665 444444433 11 3455 4333321 2 12211100011 12456899999877443
No 239
>PRK06270 homoserine dehydrogenase; Provisional
Probab=75.06 E-value=22 Score=37.39 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=64.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHHhcCCChhhhcCcEEEEecCCccccCCccCCchh-chhhccccC---------
Q 009950 332 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-KKPWAHEHE--------- 398 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~---~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~-k~~fa~~~~--------- 398 (521)
.||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+.+.+. ++.. -..|+....
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998653 22223431 122457899999887653 3221 122222111
Q ss_pred CCCCHHHHhcccCCcEEEEccCCC---CCCCHHHH-HHHHcCCCCcEEE
Q 009950 399 PVNNLLDAVKVIKPTILIGSSGVG---RTFTKEVI-EAMASFNEKPLIL 443 (521)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~---g~Ft~evv-~~Ma~~~erPIIF 443 (521)
...++.|+++...+||+|=++... +-...+++ +++. +.++||.
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 123889999887899999877531 22235554 4444 3578876
No 240
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=75.02 E-value=11 Score=39.60 Aligned_cols=130 Identities=19% Similarity=0.344 Sum_probs=78.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc-cccCCccCCchhchhhccccC--CCCCH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL-IVSSRKDSLQHFKKPWAHEHE--PVNNL 403 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL-i~~~R~~~l~~~k~~fa~~~~--~~~~L 403 (521)
++.+..||.++|+|..|+++|-.|+.. |++ +++.++|-.== +.-...| |+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 455678999999999999999988763 663 67889996421 1111112 43 3345554321 11233
Q ss_pred HHHhcccCCcEEEEccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC-----
Q 009950 404 LDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK----- 464 (521)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~----- 464 (521)
... + ..++.|=+.+.-+. +=+.+|.++.++.++-|++-.|||. |.++|.-
T Consensus 84 ~~s-a--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLSg 152 (332)
T KOG1495|consen 84 SVS-A--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLSG 152 (332)
T ss_pred ccc-C--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHcC
Confidence 221 1 24555544333221 2256777888999999999999998 6665521
Q ss_pred --CcEEEecCCCCCcce
Q 009950 465 --GRAIFASGSPFDPFE 479 (521)
Q Consensus 465 --G~aifAsGSPf~pv~ 479 (521)
-..+|.||.-.+...
T Consensus 153 fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CcccceeccCcCccHHH
Confidence 134677887666554
No 241
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=74.61 E-value=6.3 Score=44.01 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=29.0
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+..+++.+++|+|||.||-+|+..|.+. | + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~-----G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEK-----G-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHC-----C-----C--EEEEEcCC
Confidence 4468889999999998887777777642 5 2 68888873
No 242
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.48 E-value=21 Score=38.25 Aligned_cols=164 Identities=17% Similarity=0.163 Sum_probs=96.4
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 009950 309 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (521)
Q Consensus 309 GTaaV~LAgll~Alk~~--------------------g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (521)
-||-++++-+|.++|-. |.++.++||.|+|+|+.|..||+.|... | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57777888888887743 3468899999999999999999999663 2 22
Q ss_pred EEEEecCCccccCCcc-CCchhchhhccccCCCCCHHHHhcccCCcEEEEccCC----CCCCCHHHHHHHHcCCCCcEEE
Q 009950 369 ICLVDSKGLIVSSRKD-SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 369 i~lvDs~GLi~~~R~~-~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~----~g~Ft~evv~~Ma~~~erPIIF 443 (521)
|. +..|.. .....+..++. .-++.|...+ .|++|=..-- -++|+++.+..|. +.-+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 334421 12223334443 3467777776 8888754321 2689999999996 566776
Q ss_pred EcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCC-EEe-ccccccceeechhhhHHHHHhC
Q 009950 444 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNG-KVF-VPGQANNAYIFPGFGLGLVISG 507 (521)
Q Consensus 444 aLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~G-r~~-~p~Q~NN~~iFPGiglG~l~~~ 507 (521)
-.+.= +=|.-++.++.-+---|+..|- +|.-+. ... .-.-..|+-+-|=||-..+.++
T Consensus 251 N~aRG---~iide~~l~eaL~sG~i~~aGl---DVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~ 310 (336)
T KOG0069|consen 251 NTARG---AIIDEEALVEALKSGKIAGAGL---DVFEPEPPVDHPLLTLDNVVILPHIGSATLETR 310 (336)
T ss_pred ecccc---ccccHHHHHHHHhcCCcccccc---cccCCCCCCCcchhcccceeEecccccCcHHHH
Confidence 66553 3345554444322223555552 222111 111 1123456777777765555443
No 243
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=74.44 E-value=4 Score=41.06 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999875 65 789999987
No 244
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.78 E-value=13 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G-~~~eeA~~~i~lvDs~ 375 (521)
+||.|+|+|..|..+|..+... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999988653 3 21 2467777763
No 245
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=73.66 E-value=17 Score=36.84 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998764 4 367788853
No 246
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=73.22 E-value=4.8 Score=42.37 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999999763 32 2367777764
No 247
>PRK07877 hypothetical protein; Provisional
Probab=73.19 E-value=6.6 Score=45.77 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=65.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch----------hchhhccc
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----------FKKPWAHE 396 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~----------~k~~fa~~ 396 (521)
.+|++.||+|+|+| .|..+|..|+.+ |+ ..+|.++|-+=+ ..+ +|+. .|..-|..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 56889999999998 899999888875 53 268999998743 221 2333 11111110
Q ss_pred -----cC---------CC--CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 009950 397 -----HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 397 -----~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (521)
.+ .+ .++.+.+++ .|++|-++- +.=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 00 11 246666665 788887664 234666777777777888888775
No 248
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=72.82 E-value=13 Score=37.99 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|.|+|+|..|..+|..+... |. ..+++++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999988653 43 1368888874
No 249
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=72.52 E-value=15 Score=35.99 Aligned_cols=100 Identities=14% Similarity=0.242 Sum_probs=52.0
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh-hcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHh
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~ee-A~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav 407 (521)
..++||.|+|.|..+. +|.-++..+.. ++..+- +..-+.+.|..-+++.-- +-..+-..|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4579999999998766 77777665532 110000 011122222222222210 112233344442 33222
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEE
Q 009950 408 KVIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLIL 443 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIF 443 (521)
+ +-|++|+.|..|. |+++++.+. +...-|+|-
T Consensus 108 ~--~gDvli~iS~SG~--s~~v~~a~~~Ak~~G~~vI~ 141 (196)
T PRK10886 108 H--AGDVLLAISTRGN--SRDIVKAVEAAVTRDMTIVA 141 (196)
T ss_pred C--CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCEEEE
Confidence 2 4799999999774 788888763 444445444
No 250
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=72.18 E-value=5.3 Score=38.18 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=59.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc--------------cC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--------------HE 398 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~--------------~~ 398 (521)
||.|+|||..|.|||-+++.+ | -++.++|.+---...-.+.+......+.+. ..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 688999999999999999875 5 378889885221100000011100011010 01
Q ss_pred CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 009950 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (521)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~ 461 (521)
-..+|.+++ + .|.+|=+-.-.--.++++.+.+.+.+..=.||+ || | +-.+..+.-+
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ila-sn-T--Ssl~i~~la~ 124 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILA-SN-T--SSLSISELAA 124 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE-E-----SSS-HHHHHT
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEE-ec-C--CCCCHHHHHh
Confidence 124777777 4 788887654443567889999988875555553 44 2 3445555433
No 251
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=72.09 E-value=4.6 Score=42.59 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||+++|||.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999886 65 789999986
No 252
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=71.99 E-value=6.3 Score=41.95 Aligned_cols=94 Identities=18% Similarity=0.319 Sum_probs=54.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc--cccCCccCCchhchhhccc---c---CCCCCH
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHE---H---EPVNNL 403 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL--i~~~R~~~l~~~k~~fa~~---~---~~~~~L 403 (521)
.+|.|+|||+=|+++|..+.+. |- .=++|..|.+=. |..+|. ..+|-.. + .-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999874 41 235777664311 112221 1112211 1 123578
Q ss_pred HHHhcccCCc-EEEEccCCCCCCCHHHHHHHHc-CCCCcEEEEcC
Q 009950 404 LDAVKVIKPT-ILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALS 446 (521)
Q Consensus 404 ~eav~~vkpt-vLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLS 446 (521)
.++++. .| +++++++ -+..++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs---~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPS---QALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECCh---HHHHHHHHHHhhhccCCCeEEEEe
Confidence 888886 45 4455555 467778887752 23444444444
No 253
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=71.41 E-value=11 Score=39.50 Aligned_cols=123 Identities=17% Similarity=0.258 Sum_probs=84.0
Q ss_pred eeeeeecCCCccHHHHHHHHc--CCCceecc--------CCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHH
Q 009950 277 VLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTG 345 (521)
Q Consensus 277 ~lIq~EDf~~~~af~iL~ryr--~~~~~FnD--------DiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGs-Ag~G 345 (521)
.+|||==...-+.-.+|+.-. +++==||- ...+--.+|-+|++.-++-.+.+|.+.++||+|.+. -|--
T Consensus 92 IlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkP 171 (283)
T COG0190 92 ILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKP 171 (283)
T ss_pred EEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHH
Confidence 456665555455555555442 22111111 133455788899999999999999999999999876 4666
Q ss_pred HHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEEccCCCCCC
Q 009950 346 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTF 425 (521)
Q Consensus 346 ia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~F 425 (521)
+|.+|+.+ +. -+-+|+|+ .++|.+.++. +|++|-.-+.++.|
T Consensus 172 la~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~~i 213 (283)
T COG0190 172 LALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPHFI 213 (283)
T ss_pred HHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcccc
Confidence 77777652 32 24455442 1457888887 99999999999999
Q ss_pred CHHHHHHHHcCCCCcEEE
Q 009950 426 TKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 426 t~evv~~Ma~~~erPIIF 443 (521)
+.|||+ +..+|+
T Consensus 214 ~~d~vk------~gavVI 225 (283)
T COG0190 214 KADMVK------PGAVVI 225 (283)
T ss_pred cccccc------CCCEEE
Confidence 999996 445555
No 254
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=71.36 E-value=14 Score=40.27 Aligned_cols=120 Identities=24% Similarity=0.263 Sum_probs=84.2
Q ss_pred ccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc
Q 009950 304 NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (521)
Q Consensus 304 nDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~ 383 (521)
.|.-.||+--++-|++. .|..-|....+|+.|=|--|-|||..+... |. ++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg~-----GA-------~ViVtEv--------- 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRGM-----GA-------RVIVTEV--------- 240 (420)
T ss_pred cccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhcC-----CC-------eEEEEec---------
Confidence 37778999999999985 466778899999999999999999887432 42 4544332
Q ss_pred cCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 009950 384 DSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (521)
Q Consensus 384 ~~l~~~k~~fa~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~ 458 (521)
+|.+.-=|. +.-..-++.||++. .|++|=+++.-++++.|.++.|. +-.|.+ |-- -.-|+..+.
T Consensus 241 ---DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~--N~GHFd~EI~~~~ 306 (420)
T COG0499 241 ---DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILA--NAGHFDVEIDVAG 306 (420)
T ss_pred ---CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEe--cccccceeccHHH
Confidence 122211121 22234579999998 99999999999999999999995 444443 322 235666554
No 255
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=71.29 E-value=5 Score=39.26 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+++|+|||.||+..|..|.+. |. ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-----g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-----NL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----CC-------CEEEEecc
Confidence 689999999999999987552 53 58899974
No 256
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=71.15 E-value=4.8 Score=41.94 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||+++|||.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 76 689999987
No 257
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=70.65 E-value=4.2 Score=37.81 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=56.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCCCCCHHHHhccc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~eav~~v 410 (521)
.||-|+|.|..|.+||+.|... |. +++..|+. .++ .+ .+... .....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~~---~~----~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PEK---AE----ALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HHH---HH----HHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hhh---hh----hhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 53 58888852 111 21 22221 2234688999988
Q ss_pred CCcEEEEccCCCCCCCHHHHHH--H-HcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 009950 411 KPTILIGSSGVGRTFTKEVIEA--M-ASFNEKPLILALSNPTSQSECTAEEAYT 461 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~--M-a~~~erPIIFaLSNPt~~~Ectpe~A~~ 461 (521)
.|++|=+-. ...=.++++.. + +...+..||.=+|+-. ||.+-+-+-.
T Consensus 58 -~dvvi~~v~-~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 58 -ADVVILCVP-DDDAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp -BSEEEE-SS-SHHHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHH
T ss_pred -ccceEeecc-cchhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhh
Confidence 687774322 11224455554 3 3344666777777654 5555544333
No 258
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=70.32 E-value=5.1 Score=42.51 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=24.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+|+|+|||.||...|..+.+. |+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~-----G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASA-----GI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhC-----CC-------cEEEEecC
Confidence 689999999999999888753 54 46666654
No 259
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=70.03 E-value=21 Score=41.23 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeeeeeecCCCc----cHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCccc
Q 009950 256 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANH----NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAE 331 (521)
Q Consensus 256 ~~y~~~idefv~av~~~fGp~~lIq~EDf~~~----~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d 331 (521)
+.|.+.|-|.++++.+ +.+ .||.+.. =--.+++||..+|=.|+-... .++.|- ...++
T Consensus 68 ~~y~~~V~Eli~~L~~----nGF--VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF--~~qR~ 129 (637)
T TIGR03693 68 APYQKRVFEIGEILYK----NGF--VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKF--ELSRN 129 (637)
T ss_pred HHHHHHHHHHHHHHHh----CCc--eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhh--hhhhc
Confidence 3444444455555544 222 4665422 123478999887665543321 112222 12389
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-----------cCCC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----------HEPV 400 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-----------~~~~ 400 (521)
.||+++|.|..|..+.-.|+.. |+ .+|..+|.+=.. ++.. .+.+. ..-|++ ....
T Consensus 130 akVlVlG~Gg~~s~lv~sL~~s-----G~------~~I~~vd~D~v~-SNln-RIgEl-~e~A~~~n~~v~v~~i~~~~~ 195 (637)
T TIGR03693 130 AKILAAGSGDFLTKLVRSLIDS-----GF------PRFHAIVTDAEE-HALD-RIHEL-AEIAEETDDALLVQEIDFAED 195 (637)
T ss_pred ccEEEEecCchHHHHHHHHHhc-----CC------CcEEEEeccccc-hhhh-HHHHH-HHHHHHhCCCCceEeccCCcc
Confidence 9999999999988887777653 76 688888766442 2111 01122 233332 1123
Q ss_pred CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEE
Q 009950 401 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 442 (521)
Q Consensus 401 ~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPII 442 (521)
.++.++++. .|++|=+|..+..---.++-+-+.-..+|.|
T Consensus 196 ~dl~ev~~~--~DiVi~vsDdy~~~~Lr~lN~acvkegk~~I 235 (637)
T TIGR03693 196 QHLHEAFEP--ADWVLYVSDNGDIDDLHALHAFCKEEGKGFI 235 (637)
T ss_pred hhHHHhhcC--CcEEEEECCCCChHHHHHHHHHHHHcCCCeE
Confidence 578888887 7999988876532323344333333344433
No 260
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=69.96 E-value=10 Score=39.99 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHH
Q 009950 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 352 (521)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~L~d~riv~~GA-GsAg~Gia~ll~~ 352 (521)
-+||-++.-+++-+...+|..|++..+-|+|| |..|.+||+.|.-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 47899999999999999999999999999998 8999999999865
No 261
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=69.95 E-value=31 Score=36.51 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=63.3
Q ss_pred HhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh-ccccCCCCC
Q 009950 324 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNN 402 (521)
Q Consensus 324 ~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f-a~~~~~~~~ 402 (521)
..|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.. ++..+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 4457788999999999999999999997 53 54 4665665432 1111111 22 123
Q ss_pred HHHHhcccCCcEEEEccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 009950 403 LLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 447 (521)
Q Consensus 403 L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (521)
|.|.++. .|+++-..- .-++|+++.++.|. +.-+|.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC
Confidence 8999987 999885431 12689999999996 4556554444
No 262
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=69.85 E-value=3 Score=43.73 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (521)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999774
No 263
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=69.51 E-value=9.1 Score=33.38 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=51.0
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEE
Q 009950 338 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 417 (521)
Q Consensus 338 GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG 417 (521)
|.|..|.+++++|...-.. -+ -+=..++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 01 2346778887444332 1111122233478999999778999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009950 418 SSGVGRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 418 ~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (521)
+++ ....++-+.+.+. +...+|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 955 4455555555565 2455654
No 264
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=69.35 E-value=18 Score=35.50 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=41.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (521)
||+|.|| |-.|..+++.+.+. | .+++.+++. ..| + ....++.++++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d-~-----------~~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLD-L-----------TDPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccC-C-----------CCHHHHHHHHHhCC
Confidence 5888996 99999998888652 4 357777763 111 2 12246888888889
Q ss_pred CcEEEEccCC
Q 009950 412 PTILIGSSGV 421 (521)
Q Consensus 412 ptvLIG~S~~ 421 (521)
||++|=+.+.
T Consensus 51 ~d~vi~~a~~ 60 (287)
T TIGR01214 51 PDAVVNTAAY 60 (287)
T ss_pred CCEEEECCcc
Confidence 9999988764
No 265
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=69.31 E-value=7.5 Score=38.56 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=57.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc--cccCCCCCHHHH-hcc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA--HEHEPVNNLLDA-VKV 409 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa--~~~~~~~~L~ea-v~~ 409 (521)
+|+|+|+|..|..+|+.|.+. | .++.++|.+--.... .+.+..--.+ -+......|++| ++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCCc
Confidence 799999999999999999763 4 578888885322111 0110000011 122233568887 665
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcE-EEEcCCCC
Q 009950 410 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPL-ILALSNPT 449 (521)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPI-IFaLSNPt 449 (521)
.|++|-+++.. -..-++-.|+.. ..-|- |-=..||.
T Consensus 67 --aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 67 --ADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred --CCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 99999988754 344555555532 23444 44455563
No 266
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=68.99 E-value=5.8 Score=41.53 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=24.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.|+|+|||.||...|..+.+. |+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-----G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-----GI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 489999999999999888753 54 46666665
No 267
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=68.90 E-value=22 Score=37.89 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh
Q 009950 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (521)
Q Consensus 314 ~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f 393 (521)
+.|+.++|=.+..+.- .++.|+|+|.-+-..+ +++.+..++ ++|++.|+. . +....+...+
T Consensus 115 aAasavAa~~LA~~da--~~laiIGaG~qA~~ql----~a~~~v~~~------~~I~i~~r~----~---~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKDA--STLAIIGAGAQARTQL----EALKAVRDI------REIRVYSRD----P---EAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCCC--cEEEEECCcHHHHHHH----HHHHhhCCc------cEEEEEcCC----H---HHHHHHHHHH
Confidence 3455566666655532 4788999998655544 444333343 567777663 1 1111222222
Q ss_pred ccc----cCCCCCHHHHhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHHHhc
Q 009950 394 AHE----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEAYT 461 (521)
Q Consensus 394 a~~----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~A~~ 461 (521)
.+. .....++++||++ +|+++.++.. ...|+.++|+ +.--|-++ ||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~------~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK------PGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC------CCcEEEecCCCCcccccCCHHHHHh
Confidence 222 2345799999998 9999998633 3488999987 23334344 5777789999986654
No 268
>PRK08618 ornithine cyclodeaminase; Validated
Probab=68.52 E-value=12 Score=38.97 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=61.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~e 405 (521)
...++.|+|+|..|-.++..++.. .++ ++|.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999998887666542 243 679988874 222 22222222211 112467899
Q ss_pred HhcccCCcEEEEccCCC-CCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 009950 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 457 (521)
Q Consensus 406 av~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ectpe 457 (521)
+++. .|++|-++..+ ..|+ ++++ +..-|.++-- --.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 9986 99999776433 2444 5542 3445666633 2246888884
No 269
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=68.43 E-value=5.4 Score=44.01 Aligned_cols=130 Identities=16% Similarity=0.304 Sum_probs=82.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCC-----CCCH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNL 403 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~-----~~~L 403 (521)
+..||+|+||||.. ..+++...+.+...++ ...|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999985 4567766666666665 3689999964 44432111122233322 112 2589
Q ss_pred HHHhcccCCcEEEEc--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCC
Q 009950 404 LDAVKVIKPTILIGS--------------------------SGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 404 ~eav~~vkptvLIG~--------------------------S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 449 (521)
.||+++ +|..|=. .++||.|. -|+++.|-+.|+.--++=-+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999988 6665522 23334332 38899999999999999999998
Q ss_pred CCCCCCHHHHhcccCC-cEEEecCCC
Q 009950 450 SQSECTAEEAYTWSKG-RAIFASGSP 474 (521)
Q Consensus 450 ~~~Ectpe~A~~wt~G-~aifAsGSP 474 (521)
+++|- -+++|+.. +.|=-.=+|
T Consensus 150 --~~vTe-Av~r~~~~~K~VGlCh~~ 172 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIVGLCHGP 172 (442)
T ss_pred --HHHHH-HHHHhCCCCcEEeeCCch
Confidence 77764 44565654 544333333
No 270
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=68.38 E-value=13 Score=41.09 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=60.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc--cCCCCCHHHHhccc-
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI- 410 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~--~~~~~~L~eav~~v- 410 (521)
|-|+|.|..|..+|..|++. |. ++++.|+. ..+ ....++.+... .....++.|+++..
T Consensus 2 IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l~ 62 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSLE 62 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhcC
Confidence 77999999999999999764 53 57777763 211 22222221110 11235778877654
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCC
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 447 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 447 (521)
+|+++| ++-+++..++++++.+..+ .+..||.=+||
T Consensus 63 ~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 63 RPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588665 3444567778888887654 56779998988
No 271
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=68.36 E-value=6.5 Score=41.18 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
.+|+|+|||.+|+.+|..|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999998763 4 4688999864
No 272
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=68.10 E-value=21 Score=36.79 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=63.3
Q ss_pred hCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh----------chhh
Q 009950 325 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 393 (521)
Q Consensus 325 ~g~~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~----------k~~f 393 (521)
++..++..||+|.|| |-.|..+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 345567789999997 99999999888763 4 257777763 11110111110 0111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 009950 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 394 a~-~~~~~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (521)
-. +-.+...|.+++++ ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 21222356777875 9999988775432 2457888887765568998754
No 273
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.98 E-value=6.7 Score=41.24 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999875 65 789999987
No 274
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=66.85 E-value=33 Score=36.38 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceecc-CCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcc
Q 009950 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 340 (521)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAG 340 (521)
+.+.+..+. +| .++++ +-.++. .+.+.+.+| .++||+|- |-.-=-+=+||=++.-.+..|++|++.||.++|-+
T Consensus 91 l~DTarvls-~y-~D~iv-~R~~~~-~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~ 165 (334)
T PRK01713 91 MKDTARVLG-RM-YDAIE-YRGFKQ-SIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDA 165 (334)
T ss_pred HHHHHHHHH-Hh-CCEEE-EEcCch-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCC
Confidence 444444444 46 44443 344432 334444444 46899993 22223345677777777777778999999999987
Q ss_pred hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc----CCCCCHHHHhcccCCcEEE
Q 009950 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILI 416 (521)
Q Consensus 341 sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~----~~~~~L~eav~~vkptvLI 416 (521)
.- ++++-++.++.+ .|+ +|.++-.+++.-.+ + .-+.-+.+++.. ....++.+++++ +||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVy 230 (334)
T PRK01713 166 RN--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVH 230 (334)
T ss_pred cc--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 53 377877676655 465 58888887773321 1 111112333321 123689999998 99998
Q ss_pred Ecc
Q 009950 417 GSS 419 (521)
Q Consensus 417 G~S 419 (521)
-.+
T Consensus 231 t~~ 233 (334)
T PRK01713 231 TDV 233 (334)
T ss_pred Ecc
Confidence 753
No 275
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=66.49 E-value=7 Score=41.13 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=27.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (521)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999999443 123 579999986443
No 276
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=66.40 E-value=18 Score=37.08 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=55.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh--chhhccccCCCCCHHHHh
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHEHEPVNNLLDAV 407 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~--k~~fa~~~~~~~~L~eav 407 (521)
...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.-. ...+........+-.+.+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhhc
Confidence 446899999999999999888664 3 34556655321 11111111000 000000000111122233
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 009950 408 KVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (521)
. .+|++| ++... .-++++++.+... .+..+|+.|-|=-.
T Consensus 71 ~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 71 P--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred C--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 3 368776 44433 3468888887653 35667888998764
No 277
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=66.14 E-value=5.1 Score=45.21 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=31.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
++..|++++|||+-|++||+-|+.. |+ ++|-+||.--
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~k 374 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGK 374 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCe
Confidence 4568999999999999999999987 54 6899999743
No 278
>PRK06046 alanine dehydrogenase; Validated
Probab=66.02 E-value=36 Score=35.54 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=65.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~e 405 (521)
.-.++.|+|+|..|...++.+... .+ -++++++|++- ++ .....+.+... .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~------i~~v~v~~r~~----~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FD------LEEVRVYDRTK----SS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CC------ceEEEEECCCH----HH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988887766542 23 37899998852 21 22222222211 112357888
Q ss_pred HhcccCCcEEEEccCC-CCCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHHH
Q 009950 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEE 458 (521)
Q Consensus 406 av~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~~Ectpe~ 458 (521)
+++ .|+++-++.. ..+|..++++ +.-.|-++. +-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 8998877643 3478888885 233466664 444579999874
No 279
>PRK06184 hypothetical protein; Provisional
Probab=65.68 E-value=7.7 Score=42.19 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=27.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++..|+|+|||.+|+..|-+|.+. |+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~-----Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR-----GV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEeCC
Confidence 457899999999999999888763 65 46677765
No 280
>PRK06847 hypothetical protein; Provisional
Probab=65.42 E-value=8.3 Score=39.53 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 009950 331 EHRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (521)
..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999998865
No 281
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=65.34 E-value=1.6e+02 Score=29.72 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=36.4
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEec
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS 471 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAs 471 (521)
.+|++.= .+..++|.+++.++..+.|+++-++.... +.++++.-++ |-.++.-
T Consensus 173 GAD~v~v----~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~~ 225 (243)
T cd00377 173 GADGIFV----EGLKDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVSY 225 (243)
T ss_pred CCCEEEe----CCCCCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEEE
Confidence 4565552 22348899999998889999987655432 6899999888 5444433
No 282
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=65.19 E-value=20 Score=37.56 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
|++.+|.|+|+|.-|-++|..|.+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 5788999999999999999998763
No 283
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=65.15 E-value=8.7 Score=37.55 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=29.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
+|++.++||+|+|..|.-.++.|+.+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999999998888764 3 46888864
No 284
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.07 E-value=17 Score=36.17 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
||.|+|+|..|..+++-|... |.. .+.++++|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECC
Confidence 689999999999999988653 432 245666665
No 285
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=65.07 E-value=28 Score=37.80 Aligned_cols=135 Identities=13% Similarity=0.059 Sum_probs=75.6
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcC--cEEEE--ecCCccccCCccCCchhchhhccccCCCCCHHH
Q 009950 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK--KICLV--DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (521)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~--~i~lv--Ds~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (521)
=.||.|+|| |..|..+|-.|+.. |+-.+ -+ -+.|+ |.+-=..++-.-+|.+-.-++.+...-..+-.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHH
Confidence 479999999 99999999988653 54110 01 34455 432111111000122222123221110123456
Q ss_pred HhcccCCcEEEEccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccC--CcEE
Q 009950 406 AVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSK--GRAI 468 (521)
Q Consensus 406 av~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~~Ectpe~A~~wt~--G~ai 468 (521)
.+++ .|++|=+.+.+ |- +=+++.+.+.++. +.-||+--|||. ....--+++++. .+-+
T Consensus 117 ~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv---Dv~t~v~~k~sg~~~~rv 191 (387)
T TIGR01757 117 VFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC---NTNALIAMKNAPNIPRKN 191 (387)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH---HHHHHHHHHHcCCCcccE
Confidence 6777 89998666654 21 1246777777755 899999999995 444445555542 2457
Q ss_pred EecCCCCCc
Q 009950 469 FASGSPFDP 477 (521)
Q Consensus 469 fAsGSPf~p 477 (521)
|.||.-.+.
T Consensus 192 iG~gT~LDs 200 (387)
T TIGR01757 192 FHALTRLDE 200 (387)
T ss_pred EEecchhHH
Confidence 888865553
No 286
>PRK07236 hypothetical protein; Provisional
Probab=64.72 E-value=9.4 Score=39.77 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
....+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC
Confidence 4567999999999999999999763
No 287
>PLN02688 pyrroline-5-carboxylate reductase
Probab=64.61 E-value=25 Score=34.80 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-ec
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DS 374 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv-Ds 374 (521)
||.|+|.|..|.++|+-|++. |.- -..+|+++ |+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r 36 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDS 36 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCC
Confidence 689999999999999998753 420 02367777 54
No 288
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=64.52 E-value=8.4 Score=40.72 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (521)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999999875 54 46677775544
No 289
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=64.21 E-value=9.5 Score=35.89 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=28.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
+|++.+|||+|+|..|.-.++.|+++ | .++.+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcC
Confidence 57899999999999999999988774 4 36777754
No 290
>PRK08163 salicylate hydroxylase; Provisional
Probab=63.94 E-value=8.8 Score=39.75 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.5
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 009950 331 EHRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (521)
..+|+|+|||.||+..|-.|.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988865
No 291
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=63.86 E-value=10 Score=39.37 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=57.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc---ccCCCCCHHHHh
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 407 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~---~~~~~~~L~eav 407 (521)
-.++.|+|+|.-+..-++.+... .++ ++|++.|+. ..+ ...+...+.+ +.....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36899999999988888877664 233 788888874 222 2222223322 112246899999
Q ss_pred cccCCcEEEEccCCCC---CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 009950 408 KVIKPTILIGSSGVGR---TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g---~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectpe~A 459 (521)
+. +||++.++.... +|+.++++ +.-.|-++.--+ .+.|+.++-.
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHHh
Confidence 98 999998865443 68888886 355777776422 3468877543
No 292
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=63.79 E-value=9.7 Score=40.41 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
.||||+|+|.||+..|..|.+. |- .-+|.++|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999988653 21 137888888754
No 293
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.61 E-value=15 Score=37.04 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
+||.|+|+|..|.+||..++.. |. +++++|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeC
Confidence 5899999999999999988653 53 5888884
No 294
>PRK07233 hypothetical protein; Provisional
Probab=63.22 E-value=8 Score=40.15 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888663 5 357777776
No 295
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=63.19 E-value=3.9 Score=42.91 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=52.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCc----hhchhhcc-ccCCCCCHHHHhc
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ----HFKKPWAH-EHEPVNNLLDAVK 408 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~----~~k~~fa~-~~~~~~~L~eav~ 408 (521)
|+|+|+|..|-.+++.|++.. . ..++.+.|++ .++.+.+. ..+-.+.. +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~----~------~~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG----P------FEEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT----C------E-EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcCC----C------CCcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 789999999999999887641 1 1278888885 11111110 01111111 1222345888998
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009950 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (521)
+ .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 8 79999988754 788888875542 345554
No 296
>PRK09126 hypothetical protein; Provisional
Probab=63.05 E-value=8.9 Score=39.65 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 009950 331 EHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
+..|+|+|||.||+..|..|.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~ 25 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS 25 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC
Confidence 45799999999999999988763
No 297
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.99 E-value=6.3 Score=40.65 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=65.6
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh-------c-----hhhcc
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-------K-----KPWAH 395 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~-------k-----~~fa~ 395 (521)
+|++++|+++|.|..|--+++.|+.. |+ .+|.++|-+-+=..+--..+... | +.+..
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRs-----Gi------g~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~ 95 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARS-----GI------GRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQ 95 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHc-----CC------CeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHh
Confidence 58899999999999999999888774 75 78999999866443211111100 1 11110
Q ss_pred ccCCC-----------CCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEc-----CCCC
Q 009950 396 EHEPV-----------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-----SNPT 449 (521)
Q Consensus 396 ~~~~~-----------~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-----SNPt 449 (521)
-.+.+ .++.+-+.. .||-+|=+.- .+=++--+-+-+..++.|+|=.+ +|||
T Consensus 96 InP~c~V~~~~~f~t~en~~~~~~~-~~DyvIDaiD--~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPT 162 (263)
T COG1179 96 INPECEVTAINDFITEENLEDLLSK-GFDYVIDAID--SVRAKVALIAYCRRNKIPVISSMGAGGKLDPT 162 (263)
T ss_pred hCCCceEeehHhhhCHhHHHHHhcC-CCCEEEEchh--hhHHHHHHHHHHHHcCCCEEeeccccCCCCCc
Confidence 00111 245554444 6777776653 12334334444567788999877 6787
No 298
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=62.94 E-value=58 Score=36.70 Aligned_cols=186 Identities=22% Similarity=0.261 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeeeeecCCC--ccHHHHHHHHcCCC-----c-----e----eccCCCchHHHHHHHHHH
Q 009950 257 EYAELLDEFMSAVKQNYGEKVLIQFEDFAN--HNAFELLAKYGTTH-----L-----V----FNDDIQGTASVVLAGVVA 320 (521)
Q Consensus 257 ~y~~~idefv~av~~~fGp~~lIq~EDf~~--~~af~iL~ryr~~~-----~-----~----FnDDiQGTaaV~LAgll~ 320 (521)
|-..+.-.||..+.+--||..=+==+|+.. ..---+++.|+..+ | + -|+-.--|+-=|..++=+
T Consensus 159 Ei~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~ 238 (514)
T KOG2250|consen 159 EIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVEA 238 (514)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHHH
Confidence 344555667777777778877676777762 12223577776311 1 1 144444555555554444
Q ss_pred HHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhc-hhhcccc
Q 009950 321 ALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEH 397 (521)
Q Consensus 321 Alk~~g--~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k-~~fa~~~ 397 (521)
=++-.+ +.+++.||++-|-|--|.-.|+.|.+. | -+-|=+-|++|.|.... .++..+ ..++...
T Consensus 239 ~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G------~kvvavsD~~G~l~np~--Gid~~eL~~~~~~k 305 (514)
T KOG2250|consen 239 ILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----G------AKVVAVSDSKGVLINPD--GIDIEELLDLADEK 305 (514)
T ss_pred HHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----C------CEEEEEEcCceeEECCC--CCCHHHHHHHHHhh
Confidence 444444 789999999999999999999888765 4 25677899999998764 343332 2333322
Q ss_pred CCCCCHHHH--------------hcccCCcEEEEccCCCCCCCHHHHHHH-HcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 009950 398 EPVNNLLDA--------------VKVIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSN-PTSQSECTAEEAYT 461 (521)
Q Consensus 398 ~~~~~L~ea--------------v~~vkptvLIG~S~~~g~Ft~evv~~M-a~~~erPIIFaLSN-Pt~~~Ectpe~A~~ 461 (521)
..++++.++ .-.-+.|+|+=|.++ +.+|.|=.+.. +++| |+|.==|| ||+ || ++++++
T Consensus 306 ~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe--A~~vle 379 (514)
T KOG2250|consen 306 KTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE--ADEVLE 379 (514)
T ss_pred ccccccccccccCccccccCcchhhHhhCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--HHHHHH
Confidence 222222111 111258999999998 68887766665 5555 89999999 553 43 345555
No 299
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=62.93 E-value=11 Score=37.43 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeecc
Confidence 38999999999999999877 25 4799999983
No 300
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=62.78 E-value=31 Score=33.85 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=44.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh----chhhcc-ccCCCCCHHHH
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWAH-EHEPVNNLLDA 406 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~----k~~fa~-~~~~~~~L~ea 406 (521)
+|+|.|| |..|..+++.|++. |- ..+++.+|+... ..+.+.+... ...+.. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 88888888887653 31 136777775211 0111111111 111111 22233468888
Q ss_pred hcccCCcEEEEccCC
Q 009950 407 VKVIKPTILIGSSGV 421 (521)
Q Consensus 407 v~~vkptvLIG~S~~ 421 (521)
++..+||++|=+++.
T Consensus 69 ~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 69 FTEHQPDAVVHFAAE 83 (317)
T ss_pred HhhcCCCEEEEcccc
Confidence 888889999988874
No 301
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=62.61 E-value=9.1 Score=38.61 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
+..|+|+|||.||+..|-.+.+. |+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~-----G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKA-----GL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-----CC-------eEEEEecCC
Confidence 56899999999999999887552 53 688888764
No 302
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=62.49 E-value=35 Score=36.41 Aligned_cols=32 Identities=16% Similarity=0.436 Sum_probs=26.4
Q ss_pred ceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|.|+| +|..|-.+|..+..+ |. .++++|++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 7899998 999999999999764 53 47888874
No 303
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=62.44 E-value=6.5 Score=40.50 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
..+-|+|||-.|.|||+..+.. |+ ++|++|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999988775 65 79999974
No 304
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=62.43 E-value=7.6 Score=35.81 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 335 v~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
+|+|+|.+|+.+++.|++.. .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998864 1113468999999755
No 305
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=62.39 E-value=4.6 Score=41.56 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=26.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
+|||+|+|.||+..|+.+.... . ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999999998875421 0 1347999987654
No 306
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=62.39 E-value=7.6 Score=41.69 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999652 11 1368888775
No 307
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=62.29 E-value=8.3 Score=40.21 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 009950 331 EHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
+.+|+|+|||.||+..|-.|.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~ 40 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS 40 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 308
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=61.72 E-value=14 Score=40.28 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=54.4
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccC
Q 009950 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE 398 (521)
Q Consensus 319 l~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~ 398 (521)
+.++.-....|...|++++|-+.-..++++.+.+ .|+... .+ .++++.= ....+... .-+. .
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v~----~~-~~~~~~~----~~~~~~~~-~~~~---~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQIV----AA-VTTTGSP----LLQKLPVE-TVVI---G 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEEE----EE-EeCCCCH----HHHhCCcC-cEEe---C
Confidence 3444444456678999999988888999999754 376321 11 1222100 00011111 1111 2
Q ss_pred CCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEE
Q 009950 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 442 (521)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPII 442 (521)
+...|++.++..+||++||-|- .+.+-+.+ .-|.|
T Consensus 361 D~~~l~~~i~~~~~dliig~s~-----~k~~A~~l----~ip~i 395 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH-----GRALAQRL----ALPLV 395 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc-----hHHHHHHc----CCCEE
Confidence 2346788898889999998664 23444443 56765
No 309
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=61.70 E-value=29 Score=36.94 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=22.6
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
.|++.+|.|+|.|+.|.++|..|...
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~s 39 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDS 39 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHC
Confidence 46788999999999999999998653
No 310
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=61.49 E-value=9.1 Score=39.62 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.8
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
|+|+|||.||+.+|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977754 253 688898764
No 311
>PRK06475 salicylate hydroxylase; Provisional
Probab=61.33 E-value=9.3 Score=40.08 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=19.0
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (521)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999988755
No 312
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=61.23 E-value=11 Score=41.24 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.6
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
+....+|+|+|||+||+..|+.+.+.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~ 32 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRRE 32 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhc
Confidence 34457899999999999999888653
No 313
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=61.03 E-value=16 Score=40.70 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=27.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
-...+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~-----G~-------~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM-----GH-------AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 4578999999999999999887552 53 47888864
No 314
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=60.78 E-value=12 Score=36.78 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.8
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+|+++|+||+|+|..|..-++.|+.+ | .+|.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999999988874 4 368888764
No 315
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=60.61 E-value=13 Score=41.26 Aligned_cols=104 Identities=16% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCCCccccchhhhhHHhhhcCCCCCceeeEEE-ecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe
Q 009950 199 LGCQGMGIPVGKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 277 (521)
Q Consensus 199 lG~~GmgI~~GKl~Ly~a~gGI~P~~~lPI~L-DvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~ 277 (521)
.||.|. ||+++-.|.|+-==-...-+.| .|+.| +|.=.-+..+= ++.
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~dLr~LL~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SDLRHLLLATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HHHHHHHHhCC-CCc
Confidence 577664 8999999999865222555555 55533 23222333333 788
Q ss_pred eeeeecCCCccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 009950 278 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (521)
Q Consensus 278 lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GA 339 (521)
+|-+|||... |.+=++-+.+-.-+++ .-.-|+|.||||++-=.-..=.+.||+|+=.
T Consensus 289 IivIEDIDcs--~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDCS--FDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeecccc--cccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 9999999643 5444444443333333 4667999999999875555555788888864
No 316
>PLN02240 UDP-glucose 4-epimerase
Probab=60.42 E-value=18 Score=36.60 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=59.5
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch------hchhhcc-ccCC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 399 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~------~k~~fa~-~~~~ 399 (521)
.|+..+|+|.|| |-.|..+++.|++. | .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 88888888888653 4 3588887642100000000000 0111111 2222
Q ss_pred CCCHHHHhcccCCcEEEEccCCCCC----------------CCHHHHHHHHcCCCCcEEEEc
Q 009950 400 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILAL 445 (521)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaL 445 (521)
..++.++++..++|++|=+.+.... -+..+++.|.+.+-+.+||.=
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 131 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSS 131 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2457777776789999987764321 123566777665556788753
No 317
>PRK12828 short chain dehydrogenase; Provisional
Probab=60.39 E-value=17 Score=34.16 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=24.7
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++++.+++|.|| |..|..+++.+++ +|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 466789999997 5566666666644 253 58888874
No 318
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=60.30 E-value=10 Score=41.30 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (521)
-.|+|+|||.||...|..+.+.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~ 61 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKG 61 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhC
Confidence 4689999999999999888653
No 319
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=60.29 E-value=18 Score=34.50 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=24.8
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 329 L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+++.+++|.|+ |..|..+|+.+++ .| -+++++|+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 45678999996 7777777777754 25 368888774
No 320
>PRK05866 short chain dehydrogenase; Provisional
Probab=60.25 E-value=19 Score=36.28 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 326 GGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 326 g~~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+.++++.++||.|| |-.|..+|+.+++ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~-----~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFAR-----RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHH-----CC-------CEEEEEECC
Confidence 45577889999998 4445555555543 35 368888875
No 321
>PRK05993 short chain dehydrogenase; Provisional
Probab=60.20 E-value=21 Score=35.33 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=21.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.++||.|| |..|..+|+.+++ .|. ++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~~-----~G~-------~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-----DGW-------RVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEECC
Confidence 57899998 5566666666643 253 68888774
No 322
>PLN02268 probable polyamine oxidase
Probab=60.02 E-value=4.1 Score=43.07 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.0
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 009950 333 RFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~ 353 (521)
+|+|+|||-||+..|..|.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~ 22 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC
Confidence 789999999999999999763
No 323
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=59.93 E-value=13 Score=30.07 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.4
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 336 ~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
|+|||.+|+..|..|.+. | .+|.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 689999999999988763 3 47999998644
No 324
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=59.83 E-value=11 Score=36.52 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
.|+|+|||.||+..|-.|.+ .|+ ++.++|++-
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 48999999999999987754 354 577777764
No 325
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=59.61 E-value=10 Score=40.66 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
.+|+++=||++|||..|.-++++|+.. |+ .+|-+||-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999875 65 67888887654
No 326
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=59.32 E-value=13 Score=39.69 Aligned_cols=86 Identities=9% Similarity=0.129 Sum_probs=47.4
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc----
Q 009950 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---- 394 (521)
Q Consensus 319 l~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa---- 394 (521)
..++.-....|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... +.....+..+.
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444456778999999988888999987754 3873 3333211 1111 11111111110
Q ss_pred -cccCCCCCHHHHhcccCCcEEEEccC
Q 009950 395 -HEHEPVNNLLDAVKVIKPTILIGSSG 420 (521)
Q Consensus 395 -~~~~~~~~L~eav~~vkptvLIG~S~ 420 (521)
....+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 00111134678888999999999764
No 327
>PRK07045 putative monooxygenase; Reviewed
Probab=59.25 E-value=12 Score=38.88 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (521)
-+|+|+|||.||+..|-.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 4799999999999999888763
No 328
>PRK06753 hypothetical protein; Provisional
Probab=59.10 E-value=12 Score=38.47 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.5
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 009950 333 RFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~ 353 (521)
+|+|+|||.||+..|..|.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~ 22 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ 22 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999888653
No 329
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=58.59 E-value=12 Score=40.59 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=27.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+.+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-----G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-----G-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----C-------CcEEEEecC
Confidence 457999999999999999888652 5 358888875
No 330
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=58.52 E-value=13 Score=40.46 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=28.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
+.-+++|+|||.+|+++|..|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 346899999999999999998775 652 388888874
No 331
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=58.52 E-value=64 Score=34.12 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=64.6
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC--------CCCCCHHHHhcccCCcEEEec-CCCC
Q 009950 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFAS-GSPF 475 (521)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~~Ectpe~A~~wt~G~aifAs-GSPf 475 (521)
++=+.+||+++|+.++.+ +.-.-+.+=.++-+|=|.+=.-||.. ..+.|.+++++-+ ..+..+ |-
T Consensus 103 ~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK-- 176 (307)
T COG1250 103 ELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK-- 176 (307)
T ss_pred HHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC--
Confidence 333445799999988754 33333333335556668888899873 3567777765532 111111 31
Q ss_pred CcceeCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHhh
Q 009950 476 DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (521)
Q Consensus 476 ~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (521)
.||. ..+.||-.-|-..+|.+.-+..+..---.|.+.+-++
T Consensus 177 ~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~ 217 (307)
T COG1250 177 TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAA 217 (307)
T ss_pred CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1121 3678999999999999888777766555565555444
No 332
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=58.42 E-value=13 Score=38.29 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
..+|+|+|||.||+..|-.|.+.- + .|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~-~-~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS-H-GGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc-c-CCC-------EEEEEeCC
Confidence 457999999999999998886630 0 154 57777773
No 333
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=58.18 E-value=35 Score=36.52 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||.|+|+|..|..+|..+++. | .+++++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 789999999999999998763 4 357888874
No 334
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=58.08 E-value=9 Score=38.18 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=42.8
Q ss_pred HHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 009950 293 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (521)
Q Consensus 293 L~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv 372 (521)
++||..++....-.. .- -++|++-|++++|+|.-|..+++.|+.+ |+ ++++++
T Consensus 8 ~~ry~Rqi~l~~~~~---------------~~-q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~ 60 (254)
T COG0476 8 IERYSRQILLPGIGG---------------EG-QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIV 60 (254)
T ss_pred HHhhcceeeecccCH---------------HH-HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEE
Confidence 567777666654443 11 3578899999999999999999999876 65 569999
Q ss_pred ecC
Q 009950 373 DSK 375 (521)
Q Consensus 373 Ds~ 375 (521)
|.+
T Consensus 61 D~d 63 (254)
T COG0476 61 DFD 63 (254)
T ss_pred cCC
Confidence 986
No 335
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=58.04 E-value=15 Score=37.35 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=25.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (521)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 346789999999999999988775 54 68888876433
No 336
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=57.88 E-value=15 Score=39.84 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=28.5
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+-...+|+|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~-----G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKA-----G-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----C-------CcEEEEecC
Confidence 34568999999999999999988653 5 357788864
No 337
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=57.69 E-value=13 Score=42.34 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+.+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 568999999999999999988753 53 47778764
No 338
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=57.67 E-value=35 Score=34.20 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=55.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCcc--CCchhchhhcc-c----cCCCCC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SLQHFKKPWAH-E----HEPVNN 402 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~--~l~~~k~~fa~-~----~~~~~~ 402 (521)
++-||.|+|+|.-|..++..|.+. |.- ..++++.+|++- .+.. ..++.+..... + .-+...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~D~Vilavkp~~ 69 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPSK----KNTPFVYLQSNEELAKTCDIIVLAVKPDL 69 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCCh----hcCCeEEeCChHHHHHhCCEEEEEeCHHH
Confidence 456899999999999999998753 321 124688888642 1100 00111000000 0 001113
Q ss_pred HHHHhcccC----CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 403 LLDAVKVIK----PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 403 L~eav~~vk----ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
+.++++.++ ++.+ +|-..| ++.+.++.+-. ..++++-.+.|..
T Consensus 70 ~~~vl~~i~~~l~~~~i--IS~~aG-i~~~~l~~~~~-~~~~vvr~mPn~p 116 (260)
T PTZ00431 70 AGKVLLEIKPYLGSKLL--ISICGG-LNLKTLEEMVG-VEAKIVRVMPNTP 116 (260)
T ss_pred HHHHHHHHHhhccCCEE--EEEeCC-ccHHHHHHHcC-CCCeEEEECCCch
Confidence 344444333 3333 555443 66788887742 3456777888865
No 339
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.67 E-value=16 Score=39.57 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=23.8
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHH
Q 009950 325 IGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 325 ~g~~L~d~riv~~GAGsAg~Gia~ll~~ 352 (521)
.|..++.++++|+|+|.+|+.+|+.|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 4556778899999999999999988865
No 340
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=57.48 E-value=12 Score=38.66 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
..|+|+|||.||+..|-.|.+. |+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~-----G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQS-----GL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 4699999999999999887653 53 57777765
No 341
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=57.47 E-value=35 Score=35.77 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=57.9
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh--chhhcc-ccCCCCCHHH
Q 009950 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 405 (521)
Q Consensus 330 ~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~--k~~fa~-~~~~~~~L~e 405 (521)
+++||+|.|+ |-.|..+++.|.+. | .+++.+|+..- ..+... ...|.. +..+...+.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-----G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-----G-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-----C-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4579999998 99999999888663 4 36888887431 001110 111211 2122234555
Q ss_pred HhcccCCcEEEEccCCCC--C---------------CCHHHHHHHHcCCCCcEEEEcC
Q 009950 406 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 406 av~~vkptvLIG~S~~~g--~---------------Ft~evv~~Ma~~~erPIIFaLS 446 (521)
+++ ++|++|=+.+..+ . .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 565 4899998875321 1 2355777777666678998644
No 342
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=57.31 E-value=12 Score=40.18 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (521)
-.|+|+|||.||...|-.+.+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~ 27 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLARE 27 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhC
Confidence 4689999999999999888653
No 343
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=56.78 E-value=14 Score=44.31 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC----Ccccc
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVS 380 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~----GLi~~ 380 (521)
-.+.||+|+|||.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 3579999999999999999998763 53 57788875 55543
No 344
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=56.63 E-value=10 Score=41.60 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+.|++-+|+++|+|+.|.-+++.|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999999875 76 789999986
No 345
>PRK07589 ornithine cyclodeaminase; Validated
Probab=56.52 E-value=59 Score=34.71 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=65.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCCHHHHh
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAV 407 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~L~eav 407 (521)
-.++.|+|+|.-+..-++.++... . -++|++.|+. ..+ ...+.+.+.+. -....++++++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr----~------i~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~av 191 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALL----G------IEEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEAV 191 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhC----C------ceEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHHH
Confidence 478999999998887777776632 2 2678888763 221 22222222211 11236899999
Q ss_pred cccCCcEEEEccCCC---CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 009950 408 KVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (521)
Q Consensus 408 ~~vkptvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectpe~ 458 (521)
++ +||++.++... -+|..++++. .--|-++ |+--.+.|+.++-
T Consensus 192 ~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 192 EG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred hc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 98 99999877432 3688888853 2235554 4433578998875
No 346
>PRK00536 speE spermidine synthase; Provisional
Probab=56.47 E-value=18 Score=37.16 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=49.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCC-CCHHHHhccc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 410 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~-~~L~eav~~v 410 (521)
.||+|+|+|-.| +++-+++. .+++.|||-++-|++--++.++.....|..+.-.. ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh------------~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY------------DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc------------CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999875 45555543 13899999999777543334665554443221111 1222211 13
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMA 434 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma 434 (521)
+-||+|-=| +|+++-.+.+.
T Consensus 139 ~fDVIIvDs----~~~~~fy~~~~ 158 (262)
T PRK00536 139 KYDLIICLQ----EPDIHKIDGLK 158 (262)
T ss_pred cCCEEEEcC----CCChHHHHHHH
Confidence 689998655 36776655543
No 347
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=56.42 E-value=11 Score=39.39 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
.+|||+|+|.||+..|+.|.+. +- .-+|.++++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCC
Confidence 4899999999999999988552 11 23677776644
No 348
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=56.39 E-value=13 Score=39.86 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=27.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3689999999999999988763 5 4789999864
No 349
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=56.24 E-value=11 Score=39.39 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
++|..-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+=
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGL 60 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCc
Confidence 568899999999999999999999876 65 7899999863
No 350
>PLN02676 polyamine oxidase
Probab=56.22 E-value=29 Score=38.19 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=27.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
..+++|+|||.+|++.|..|.+. |. +++.+++++.-
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~-----g~------~~v~vlE~~~~ 61 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEA-----GI------EDILILEATDR 61 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-----CC------CcEEEecCCCC
Confidence 56799999999999999998763 53 24566666543
No 351
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=55.98 E-value=13 Score=37.44 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=29.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (521)
.+-.++|+|||.||+..|..+.+. | .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-----G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-----G-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEecCCCC
Confidence 467899999999999999887653 5 468888887543
No 352
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=55.59 E-value=12 Score=39.02 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
...|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999988754 364 478888763
No 353
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=55.58 E-value=12 Score=38.52 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.2
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 009950 334 FLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~ 353 (521)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999999764
No 354
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=55.52 E-value=37 Score=35.76 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=27.1
Q ss_pred CCHHHHhcccCCcE-EEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009950 401 NNLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 401 ~~L~eav~~vkptv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (521)
+.|.+.... .|+ ++|-|-..+ |-.-++++|+ +..|||+
T Consensus 311 ~el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 311 GELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 356666766 898 777664332 4445899999 6899997
No 355
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=55.51 E-value=73 Score=29.50 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (521)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999876 6888888764 444456665444444
No 356
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=55.47 E-value=14 Score=39.30 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~-----g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASA-----G-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecCC
Confidence 4699999999999999888663 5 4699999864
No 357
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=55.43 E-value=35 Score=39.17 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=51.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (521)
.||.|+|+|..|..+|+.+... |. ..+++++|++ .++ +...++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999998653 53 2458888874 111 111110 00000122356666654
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCC-CCcEEEEcC
Q 009950 412 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALS 446 (521)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLS 446 (521)
+|++| ++..+ ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 44333 34566666666432 333444343
No 358
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=55.28 E-value=12 Score=40.01 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.3
Q ss_pred CcccceEEEeCcchHHHHHHHHH
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELI 350 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll 350 (521)
..+..||||+|+|.||+..|+.|
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L 29 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNL 29 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHh
Confidence 34567999999999999988766
No 359
>PRK12829 short chain dehydrogenase; Provisional
Probab=55.27 E-value=26 Score=33.66 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=23.6
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+++.+++|.|| |..|..+++.+++ .|. +++++++.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~-----~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAE-----AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 378899999998 4445555555543 353 58888863
No 360
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.23 E-value=16 Score=37.47 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=47.9
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC---C-----CCCCHHHHhcccCCcEEE-ecCCCCCcceeC
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---Q-----SECTAEEAYTWSKGRAIF-ASGSPFDPFEYN 481 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~-----~Ectpe~A~~wt~G~aif-AsGSPf~pv~~~ 481 (521)
+|+++|..++. .+....+..=..+.+|=|.+=+.||-. . .+-|.++++++.. ..+. +.|. .||..
T Consensus 112 ~~~~il~snTS--~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~-~~~~~~lgk--~pv~v- 185 (286)
T PRK07819 112 DPDAVLASNTS--SIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAE-EFASDVLGK--QVVRA- 185 (286)
T ss_pred CCCcEEEECCC--CCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHH-HHHHHhCCC--CceEe-
Confidence 68899977764 355555554445566667778888742 1 2233344444321 1112 2342 24433
Q ss_pred CEEeccccccceeechhhhHHHHH
Q 009950 482 GKVFVPGQANNAYIFPGFGLGLVI 505 (521)
Q Consensus 482 Gr~~~p~Q~NN~~iFPGiglG~l~ 505 (521)
.+.||-.=|-..+|-+--++-+
T Consensus 186 --~d~pGfi~nRi~~~~~~Ea~~l 207 (286)
T PRK07819 186 --QDRSGFVVNALLVPYLLSAIRM 207 (286)
T ss_pred --cCCCChHHHHHHHHHHHHHHHH
Confidence 2567777777777777655543
No 361
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=54.91 E-value=18 Score=37.78 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 345799999999999999888763 242 46889998643
No 362
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=54.81 E-value=49 Score=33.43 Aligned_cols=86 Identities=12% Similarity=0.256 Sum_probs=51.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (521)
||+|.|| |-.|..+++.|.+. | +++.+|+..- .+.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~-----g--------~V~~~~~~~~--------------~~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPL-----G--------NLIALDVHST--------------DYCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhcc-----C--------CEEEeccccc--------------cccCCCCCHHHHHHHHHhcC
Confidence 7899997 99999988877542 2 3666665311 01112122235778888888
Q ss_pred CcEEEEccCCCCCC----------------CHHHHHHHHcCCCCcEEEEcC
Q 009950 412 PTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 412 ptvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFaLS 446 (521)
||++|=+.+....- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776543221 234555555544 46887544
No 363
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=54.76 E-value=14 Score=40.69 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
-.|||+|+|.+|++||..+... |+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4699999999999999888763 65 588888763
No 364
>PRK06841 short chain dehydrogenase; Provisional
Probab=54.73 E-value=22 Score=34.10 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=25.0
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++++.+++|.|| |..|..+|+.+++ .|. +++++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467889999997 5566666666643 353 57788775
No 365
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=54.65 E-value=49 Score=32.51 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=51.7
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhc----hhhcc-ccCCCCCHHHH
Q 009950 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 406 (521)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k----~~fa~-~~~~~~~L~ea 406 (521)
||+|.|| |..|..+++.|++. | .+++++|+. .......+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~-----g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES-----G-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC-----C-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5777775 87888888777652 4 356677642 111011111111 01111 22223467778
Q ss_pred hcccCCcEEEEccCCCCCC----------------CHHHHHHHHcCCCCcEEEE
Q 009950 407 VKVIKPTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILA 444 (521)
Q Consensus 407 v~~vkptvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFa 444 (521)
++..++|++|=+.+..... +..+++.|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8767899998665432111 2355677776555677773
No 366
>PLN02463 lycopene beta cyclase
Probab=54.64 E-value=14 Score=40.52 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=24.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
-.|+|+|||.||..+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 478999999999999988764 254 46667664
No 367
>PRK08013 oxidoreductase; Provisional
Probab=54.62 E-value=15 Score=38.68 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=25.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+-.|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3579999999999999977755 365 46666654
No 368
>PRK07588 hypothetical protein; Provisional
Probab=54.58 E-value=15 Score=38.12 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (521)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988865
No 369
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=54.56 E-value=16 Score=37.56 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=26.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
.|+|+|||.+|+.+|-.|.+. | .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-----g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-----G-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccCC
Confidence 489999999999999888653 5 35888888654
No 370
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=54.54 E-value=14 Score=37.80 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=24.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
|+|+|||.||+..|-.|.+. |+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-----G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-----GL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-----CC-------EEEEEeCCC
Confidence 79999999999999877653 54 466777763
No 371
>PLN02427 UDP-apiose/xylose synthase
Probab=54.40 E-value=40 Score=35.19 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=51.6
Q ss_pred HHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCch-------hchhh
Q 009950 322 LKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-------FKKPW 393 (521)
Q Consensus 322 lk~~g~~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~-------~k~~f 393 (521)
+.+.||+++-.||+|.|| |-.|.-+++.|++. .| .+++.+|+.. .+...+.+ ...+|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 557899999999999996 99999998888763 12 3677788531 11011110 01122
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEEccCC
Q 009950 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGV 421 (521)
Q Consensus 394 a~-~~~~~~~L~eav~~vkptvLIG~S~~ 421 (521)
.+ +..+...+.+++++ +|++|=+.+.
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~ 96 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAI 96 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEcccc
Confidence 22 11223457788876 8999977764
No 372
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=54.16 E-value=16 Score=38.10 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=24.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 579999999999999987765 365 46667754
No 373
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=54.08 E-value=36 Score=34.40 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||.|+|+|..|.++|..++.. |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 53 57777764
No 374
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=54.03 E-value=28 Score=35.85 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=59.5
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCC-CCHH
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLL 404 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~-~~L~ 404 (521)
|..++ +++|+||=--|.+||+.|... + +|.++|-+ +|-+.+..+.-.. ..+.
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~~ 91 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFRN 91 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeeccC
Confidence 45555 999999999999999988542 2 79999974 2222222110000 1111
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
+ + .++||++|=++|-||+ +++.++.. .|=+|=.=||.
T Consensus 92 ~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~ 128 (252)
T PF06690_consen 92 G-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPK 128 (252)
T ss_pred C-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCC
Confidence 1 1 2379999999999986 99998776 36677778888
No 375
>PRK06185 hypothetical protein; Provisional
Probab=54.02 E-value=15 Score=38.22 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=26.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999977754 364 466777653
No 376
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=53.99 E-value=49 Score=33.73 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
.||.|+|+|..|-.+|.-|.+. |.- ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-----g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-----NIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-----CCC---CCceEEEECC
Confidence 3799999999999999988653 531 2346888886
No 377
>PRK06138 short chain dehydrogenase; Provisional
Probab=53.94 E-value=25 Score=33.49 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=23.4
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.|++.+++|.|| |.-|..+|+.+++ .| .++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~-----~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAR-----EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHH-----CC-------CeEEEecCC
Confidence 467789999997 4555555555543 25 257877764
No 378
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=53.85 E-value=16 Score=37.33 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
...|+|+|||.+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 34699999999999999888663 5 4688998764
No 379
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=53.73 E-value=33 Score=35.15 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=57.0
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-ccCCCCCHHHH
Q 009950 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 406 (521)
Q Consensus 329 L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~-~~~~~~~L~ea 406 (521)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|+...-...-...+...+..|.. +..+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999986 77888888887653 31 136888876422100000001101111211 22223467778
Q ss_pred hcccCCcEEEEccCCCCC----C------------CHHHHHHHHcCCCCcEEEEcC
Q 009950 407 VKVIKPTILIGSSGVGRT----F------------TKEVIEAMASFNEKPLILALS 446 (521)
Q Consensus 407 v~~vkptvLIG~S~~~g~----F------------t~evv~~Ma~~~erPIIFaLS 446 (521)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 876 8999977664311 1 234566666555567888543
No 380
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=53.71 E-value=20 Score=38.94 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=37.0
Q ss_pred HHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEe
Q 009950 295 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (521)
Q Consensus 295 ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD 373 (521)
+|......+.|=..||+ .++++++++|.|| |..|..+|+.+++ .|. ++.++|
T Consensus 157 ~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La~-----~G~-------~Vi~l~ 209 (406)
T PRK07424 157 AYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELHQ-----QGA-------KVVALT 209 (406)
T ss_pred ceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEEe
Confidence 55667788999888888 2467789999997 4455555555543 253 577777
Q ss_pred cC
Q 009950 374 SK 375 (521)
Q Consensus 374 s~ 375 (521)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 64
No 381
>PRK08244 hypothetical protein; Provisional
Probab=53.64 E-value=15 Score=39.72 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (521)
..|+|+|||.+|+..|-.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~ 24 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA 24 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 4699999999999999888653
No 382
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=53.58 E-value=16 Score=39.28 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.++|+|||.||+.+|..|.+. | .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~~-----G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQL-----N-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 589999999999999888642 4 367788874
No 383
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=53.50 E-value=37 Score=32.72 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=25.4
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 577899999997 6666667776654 253 57777764
No 384
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=53.38 E-value=16 Score=39.49 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=27.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
...+|+|+|+|.||+..|..+... | .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-----g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-----G-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEccC
Confidence 457999999999999999887542 4 368888875
No 385
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=53.34 E-value=79 Score=29.61 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEEcCC
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSN 447 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSN 447 (521)
+-|++|++|..| -|+++++.+. +...-|+|. ++|
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~Ga~vI~-IT~ 136 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALEAAKERGMKTIA-LTG 136 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEE-EeC
Confidence 479999999866 6899999885 333445555 444
No 386
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=53.29 E-value=16 Score=41.05 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.||+|+|||.+|+..|+.|.+. |+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-----g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-----GL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-----T--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------CCeEEecC
No 387
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=53.17 E-value=15 Score=35.56 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=24.4
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++.+.+++|.|| |..|..||+.+++ +|. +++++|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~-----~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLA-----EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----cCC-------EEEEEcCC
Confidence 467889999997 5556666666654 253 57788764
No 388
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.14 E-value=50 Score=35.49 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=59.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh--chhhccccCCCCCHHHHh
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHEHEPVNNLLDAV 407 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~--k~~fa~~~~~~~~L~eav 407 (521)
+|-.|+|+|.|-.|+++|++|.+. |. ++...|.+-- ....+.|... ..++.. ...+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~-----G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~---~~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQ-----GI-------PFAVMDSREQ--PPGLDTLAREFPDVELRC---GGFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhC-----CC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEe---CCCC-hHHh
Confidence 577899999999999988888653 63 5788886421 0000112110 001100 0011 2334
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 009950 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 473 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGS 473 (521)
+ ++|++|=.++.+ .-.+++.++.. ...||+ +.+|.- +.....+.|--|||
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el~----~~~~~~~~I~VTGT 116 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIELF----AREAKAPVIAITGS 116 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHHH----HHhcCCCEEEEECC
Confidence 4 378887555554 34677777654 356776 123332 22234567778886
No 389
>PRK11445 putative oxidoreductase; Provisional
Probab=53.09 E-value=16 Score=37.77 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.8
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009950 333 RFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (521)
.|+|+|||.||...|..|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999988755
No 390
>PRK06392 homoserine dehydrogenase; Provisional
Probab=53.03 E-value=52 Score=34.80 Aligned_cols=82 Identities=15% Similarity=0.270 Sum_probs=49.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-HhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCC--CHHH
Q 009950 333 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVN--NLLD 405 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~-~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~--~L~e 405 (521)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+-+.|++|.+...+.=++.+.. .+... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~-~~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKII-SYKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHH-HHHhcCccccCCCCcCCHHH
Confidence 79999999999999999866210 112321 1225567999988876531222211 11110 01112 5666
Q ss_pred HhcccCCcEEEEccC
Q 009950 406 AVKVIKPTILIGSSG 420 (521)
Q Consensus 406 av~~vkptvLIG~S~ 420 (521)
.++ .++||+|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 58999999884
No 391
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=52.91 E-value=18 Score=37.87 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 009950 331 EHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
..+|+|+|||.||+..|-.|.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~ 24 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA 24 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc
Confidence 36799999999999999888653
No 392
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=52.84 E-value=15 Score=38.16 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 3579999999999999987754 354 57788875
No 393
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=52.73 E-value=21 Score=38.94 Aligned_cols=85 Identities=16% Similarity=0.267 Sum_probs=56.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchh---chhhc-cccCCCCCHHHHh
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWA-HEHEPVNNLLDAV 407 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~---k~~fa-~~~~~~~~L~eav 407 (521)
.+||++|||-.|..+|..|++- |- .+|.+.|+. .+..+.+... +.... -|..+.+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999999763 31 589988883 1111111111 11122 1334556899999
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHc
Q 009950 408 KVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (521)
++ .|+.|-+-. +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 98 699887654 4688888877654
No 394
>PRK08219 short chain dehydrogenase; Provisional
Probab=52.65 E-value=55 Score=30.57 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=39.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchh-----hcc-ccCCCCCHH
Q 009950 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-----WAH-EHEPVNNLL 404 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~-----fa~-~~~~~~~L~ 404 (521)
.+++|.|| |..|..+++.|++. .+++++|++. +.+....+. +.+ +..+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 47888887 55666666665431 3578888751 111111111 111 112234667
Q ss_pred HHhccc-CCcEEEEccCCC
Q 009950 405 DAVKVI-KPTILIGSSGVG 422 (521)
Q Consensus 405 eav~~v-kptvLIG~S~~~ 422 (521)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777655 689999887754
No 395
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=52.51 E-value=15 Score=41.89 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=27.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++..|+|+|||.||+..|-.|.+. .|+ ++.++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 356899999999999999888762 255 47788876
No 396
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=52.36 E-value=19 Score=37.30 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
..++|+|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL-----G-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-----C-------CcEEEEeCC
Confidence 457999999999999999888642 4 468888875
No 397
>PRK07538 hypothetical protein; Provisional
Probab=52.35 E-value=17 Score=38.31 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.3
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009950 333 RFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (521)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999987755
No 398
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=52.27 E-value=16 Score=38.25 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887631 13 478899986
No 399
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=52.26 E-value=16 Score=40.26 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
||+++|||+.|+-+++.|+.. |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999886 552211 2689999986
No 400
>PRK09186 flagellin modification protein A; Provisional
Probab=52.18 E-value=16 Score=35.05 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=22.0
Q ss_pred cccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 329 LAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 329 L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+++.+++|.||+ ..|..+|+.+++ +|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~-----~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILE-----AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 457889999984 455556666543 353 46777653
No 401
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=52.13 E-value=18 Score=37.83 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+|+|+|||-+|+.+|..+.+. | .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 689999999999999888653 4 368888885
No 402
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=52.06 E-value=21 Score=37.73 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=25.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccc
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~ 379 (521)
|+|+|||.||+.+|-.|.+. ..| .++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCCC
Confidence 78999999999999877653 124 3577777754333
No 403
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=51.92 E-value=18 Score=38.03 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=26.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
...|+|+|||.||+..|-.|.+. |+ ++-++|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-----G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-----GL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEccC
Confidence 35799999999999999888764 64 57788876
No 404
>PRK06182 short chain dehydrogenase; Validated
Probab=51.80 E-value=25 Score=34.42 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=39.5
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh-ccccCCCCCHHHHh
Q 009950 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAV 407 (521)
Q Consensus 330 ~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f-a~~~~~~~~L~eav 407 (521)
+..+++|.|| |..|..+|+.+++ .| -++++++++- ++.+.+......+ .-|..+..++.+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~-----~G-------~~V~~~~r~~----~~l~~~~~~~~~~~~~Dv~~~~~~~~~~ 65 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAA-----QG-------YTVYGAARRV----DKMEDLASLGVHPLSLDVTDEASIKAAV 65 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHH
Confidence 3568999997 4455556665543 25 3577776641 1100011111111 11222233555666
Q ss_pred ccc-----CCcEEEEccCCC
Q 009950 408 KVI-----KPTILIGSSGVG 422 (521)
Q Consensus 408 ~~v-----kptvLIG~S~~~ 422 (521)
+.+ ++|++|=..+..
T Consensus 66 ~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 66 DTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 644 799999877643
No 405
>PRK10262 thioredoxin reductase; Provisional
Probab=51.73 E-value=13 Score=37.72 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
-+..+|||+|||.||+..|..+.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~ 28 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA 28 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC
Confidence 3567899999999999999888663
No 406
>PRK14852 hypothetical protein; Provisional
Probab=51.71 E-value=13 Score=44.93 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
.+|++.||+|+|+|..|..||+.|+.+ |+ ++|.++|-+=
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~ 366 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDA 366 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCE
Confidence 578999999999999999999999875 76 7899999873
No 407
>PRK14694 putative mercuric reductase; Provisional
Probab=51.65 E-value=19 Score=38.94 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999988764 4 478899975
No 408
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=51.29 E-value=22 Score=36.30 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=31.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCc
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (521)
+..||+++|+|.-|.-+++.|+.....-.++... .--+|.++|.+=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~-~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP-GGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC-CCCEEEEECCCEE
Confidence 4689999999999999999998852100011100 0018999998743
No 409
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=51.19 E-value=14 Score=38.58 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 68999999999999988755 364 56677765
No 410
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=51.14 E-value=94 Score=31.36 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=53.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhccc
Q 009950 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (521)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v 410 (521)
.||.++|+ |..|-.+++.+... .++ +-..++|++. ++.... ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99999988777542 122 3456677752 111111 111 1122367888876
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (521)
++|++|=+|.+. ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 499999888533 336666665543 5777755
No 411
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=51.11 E-value=18 Score=38.87 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+||+|||+||+..|..+.+. | +++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 79999999999999888763 5 478899975
No 412
>PRK12831 putative oxidoreductase; Provisional
Probab=50.81 E-value=20 Score=39.16 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
...+|+|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 457899999999999999988763 53 57778763
No 413
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=50.74 E-value=19 Score=40.17 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
-.|+|+|+|..|++||..|+.. |+ ++.++|+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 5699999999999999998763 64 58888875
No 414
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=50.69 E-value=2.7e+02 Score=30.45 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=50.3
Q ss_pred eeeEEEecCCCccccccCcccccccccCCChhhhHHHHHHHH---------HHHHHhc-CCCeeeeeecCCCccHHHHHH
Q 009950 225 CLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFM---------SAVKQNY-GEKVLIQFEDFANHNAFELLA 294 (521)
Q Consensus 225 ~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv---------~av~~~f-Gp~~lIq~EDf~~~~af~iL~ 294 (521)
.+|.+.+.-..=+++.+||-+. +||+.++.+++ ..+.+.+ |.+..+-.||+....+|++-
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r- 92 (397)
T PRK04346 23 LMPALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKIN- 92 (397)
T ss_pred HHHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHH-
Confidence 3344444444445667776433 44444444443 2244455 45666677777666665321
Q ss_pred HHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCcccceEEE-eCcchHHHHHHHHHHH
Q 009950 295 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF-LGAGEAGTGIAELIAL 352 (521)
Q Consensus 295 ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~L~d~riv~-~GAGsAg~Gia~ll~~ 352 (521)
.++.-++.|. ..|+ .+++. -|||..|+++|-....
T Consensus 93 ------------------~al~~~l~A~-~~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 93 ------------------NVLGQALLAK-RMGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred ------------------HHHHHHHHHH-HcCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 1222233332 2343 35666 6999999988876654
No 415
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.63 E-value=9.5 Score=45.17 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=73.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc-cccCCC--CCH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPV--NNL 403 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa-~~~~~~--~~L 403 (521)
++|.++++.++|||+.|+-.-+-++.. |+.--+- ..|.+.|-+ +|.++ +|+. |--|- ++.... ..-
T Consensus 426 eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~~-g~ItVTDmD-~IEkS---NLnR-QFLFR~~dVgk~KSe~A 494 (1013)
T KOG2012|consen 426 EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGNS-GKITVTDMD-HIEKS---NLNR-QFLFRPWDVGKPKSEVA 494 (1013)
T ss_pred HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCCC-CceEEeccc-hhhhc---cccc-eeeccccccCchHHHHH
Confidence 679999999999999999887777653 5532111 246666655 33333 2432 11221 121111 346
Q ss_pred HHHhcccCCcEEEE-------ccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEE
Q 009950 404 LDAVKVIKPTILIG-------SSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 469 (521)
Q Consensus 404 ~eav~~vkptvLIG-------~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aif 469 (521)
.+|+...+|++.|= -.+ -++|+.+--+.+. =++=||=|= ||-.|-|.||+|
T Consensus 495 A~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~VanALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 495 AAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHHHhhcch---------hhhhhhhhhhhh
Confidence 78899999999863 333 2578888777663 244456664 678888999987
No 416
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=50.61 E-value=10 Score=40.56 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (521)
++|+|+|||-||+..|..|.+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhh
Confidence 4799999999999999999764
No 417
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=50.48 E-value=18 Score=39.73 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
-.|||+|+|.+|.++|..+... |+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 4699999999999999999763 64 58889876
No 418
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=50.42 E-value=20 Score=41.00 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=27.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
...||+|+|||.||+..|..+... | .++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G-------~~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----G-------HDVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEecC
Confidence 457999999999999999988753 5 357778764
No 419
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=50.33 E-value=17 Score=38.79 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4689999999999999988763 4 468899975
No 420
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=50.33 E-value=20 Score=40.80 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
..|+|+|||.+|+.+|-.|.+. |. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-----G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-----GW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4799999999999999998663 53 689999874
No 421
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=50.32 E-value=19 Score=38.84 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
|++|+|+|+||+..|..+.+. | +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----G-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEECC
Confidence 799999999999999988763 5 469999975
No 422
>PRK13938 phosphoheptose isomerase; Provisional
Probab=50.07 E-value=50 Score=32.41 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (521)
+-|++|++|..| =|+++++.+. +...-|+|.=-+||.
T Consensus 113 ~~DllI~iS~SG--~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 113 PGDTLFAISTSG--NSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 479999999876 5899998874 445566666455544
No 423
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.01 E-value=21 Score=39.09 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
.+...||+|+|+|-+|.++|+.+...
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHC
Confidence 35668999999999999999998753
No 424
>PRK10015 oxidoreductase; Provisional
Probab=49.98 E-value=18 Score=38.94 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
-.++|+|||.||...|-.+++ .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999988865 364 477777653
No 425
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=49.84 E-value=20 Score=43.60 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
-..+||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 3568999999999999999998663 53 57788865
No 426
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=49.84 E-value=18 Score=40.28 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
.|+|+|||.||+..|..+.+. | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999887652 4 4688898753
No 427
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=49.78 E-value=20 Score=38.36 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (521)
.+||+|||.||+..|..+.+. | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 489999999999999888753 5 46889998
No 428
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=49.72 E-value=23 Score=40.95 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.6
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
-.+.+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G-------~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----G-------YDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 4578999999999999999998763 5 358888874
No 429
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=49.70 E-value=1.1e+02 Score=32.71 Aligned_cols=138 Identities=13% Similarity=0.181 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceecc-CCCchHHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 009950 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 339 (521)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alk~~g-~~L~d~riv~~GA 339 (521)
+.+.+..+. +| .++++ +-... +.+.+.+.+| .++||+|= |-..=-+=+||=++.-.+..| +++++.+|.++|-
T Consensus 90 l~Dtarvls-~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD 164 (336)
T PRK03515 90 IKDTARVLG-RM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGD 164 (336)
T ss_pred HHHHHHHHH-Hh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCC
Confidence 444444444 46 44433 33333 3334444454 47999993 223334557788777777766 4799999999998
Q ss_pred chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-c---CCCCCHHHHhcccCCcEE
Q 009950 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTIL 415 (521)
Q Consensus 340 GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~---~~~~~L~eav~~vkptvL 415 (521)
+.- .+++-++.++.+ .|+ ++.++--+|+.-.. + +-+.-+.+++. . .-..++.|++++ +||+
T Consensus 165 ~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvv 229 (336)
T PRK03515 165 ARN--NMGNSLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFI 229 (336)
T ss_pred CcC--cHHHHHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 632 467777666654 364 58888777763321 1 11111233332 1 123689999998 9999
Q ss_pred EEcc
Q 009950 416 IGSS 419 (521)
Q Consensus 416 IG~S 419 (521)
.-.+
T Consensus 230 ytd~ 233 (336)
T PRK03515 230 YTDV 233 (336)
T ss_pred EecC
Confidence 9864
No 430
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=49.60 E-value=20 Score=38.50 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=23.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (521)
|||+|+|.||+.-|-..+.. | .++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr~-----G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARA-----G-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHT-----T-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHHC-----C-------CEEEEEECCccC
Confidence 79999999999998777653 6 378999998865
No 431
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=49.57 E-value=20 Score=37.69 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=25.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3579999999999999977754 365 46677764
No 432
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=49.53 E-value=16 Score=37.84 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 009950 333 RFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~ 353 (521)
.|+|+|||.||+..|-.|.+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999888663
No 433
>PRK06545 prephenate dehydrogenase; Validated
Probab=49.47 E-value=50 Score=34.84 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (521)
.||.|+|+|..|.++|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998663
No 434
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=49.34 E-value=20 Score=37.11 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=26.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 3579999999999999977754 364 577888763
No 435
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=49.23 E-value=19 Score=38.72 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (521)
+++|+|||-+|.-||+.+.+ .| +++.+||++--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 58999999999999994433 24 778888875444
No 436
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=49.22 E-value=1.4e+02 Score=29.40 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=29.0
Q ss_pred CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009950 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (521)
.+.+.++. .|++|..|... .|.--++++|+ +..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 46677776 89999888754 57788999999 4789985
No 437
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=49.05 E-value=20 Score=36.78 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.|+|+|||-+|+.+|-.|.+. | .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 489999999999999888753 5 357888875
No 438
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=49.03 E-value=22 Score=38.52 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34699999999999999888663 5 579999975
No 439
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=48.93 E-value=39 Score=36.65 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhch-----h
Q 009950 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-----P 392 (521)
Q Consensus 318 ll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~-----~ 392 (521)
+..++.-....|+..|++++|.++-.-.+++++. +.|+.. ..+ |.-.... +.....++ .
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~-----elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYE-----DLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH-----HCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 4566666678899999999987765566665443 347632 211 0000000 00111100 1
Q ss_pred hccccCCCCCHHHHhcccCCcEEEEccC
Q 009950 393 WAHEHEPVNNLLDAVKVIKPTILIGSSG 420 (521)
Q Consensus 393 fa~~~~~~~~L~eav~~vkptvLIG~S~ 420 (521)
..-+..+...+++.++..|||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 1111122346888999999999999774
No 440
>PLN02568 polyamine oxidase
Probab=48.83 E-value=11 Score=42.20 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
+..+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999874
No 441
>PRK06834 hypothetical protein; Provisional
Probab=48.70 E-value=23 Score=38.97 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=27.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
.+..|+|+|||.+|+..|-.|.+. |+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-----G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-----GV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecCC
Confidence 457899999999999999988663 65 477788754
No 442
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=48.49 E-value=14 Score=41.40 Aligned_cols=44 Identities=32% Similarity=0.312 Sum_probs=31.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCC--ChhhhcCcE-----EEEecCCcccc
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKA--PVEETRKKI-----CLVDSKGLIVS 380 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~--~~eeA~~~i-----~lvDs~GLi~~ 380 (521)
+||+|+|||-||++.|..|+++ |. +.=||+.++ =..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999886 54 444555542 12556666554
No 443
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=48.44 E-value=22 Score=38.06 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4699999999999999888663 4 478889983
No 444
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=48.42 E-value=46 Score=36.71 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=46.0
Q ss_pred HHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc-----
Q 009950 320 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA----- 394 (521)
Q Consensus 320 ~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa----- 394 (521)
..+......|+..|++++|.|.-...++.++. +.|+.. .++-. .....++.....+...
T Consensus 324 ~~ld~~~~~L~GKrv~i~~g~~~~~~~~~~l~-----ELGmev-------v~~g~----~~~~~~~~~~~~~~~~~~~~i 387 (466)
T TIGR01282 324 AVIAKYRPRLEGKTVMLYVGGLRPRHVIGAFE-----DLGMEV-------IGTGY----EFAHNDDYERTTKYMKDGTLI 387 (466)
T ss_pred HHHHHHHHhcCCCEEEEECCCCcHHHHHHHHH-----HCCCEE-------EEEee----ecCCHHHHHHHHHhcCCCeEE
Confidence 33444567889999999998876666666543 348732 11110 0000011111111110
Q ss_pred cccCCCCCHHHHhcccCCcEEEEccC
Q 009950 395 HEHEPVNNLLDAVKVIKPTILIGSSG 420 (521)
Q Consensus 395 ~~~~~~~~L~eav~~vkptvLIG~S~ 420 (521)
-+..+...|++.++..|||++||-|-
T Consensus 388 ~~~~d~~el~~~i~~~~pDl~ig~~~ 413 (466)
T TIGR01282 388 YDDVTHYEFEEFVEKLKPDLVGSGIK 413 (466)
T ss_pred eeCCCHHHHHHHHHHhCCCEEEecCC
Confidence 01122246888899999999998774
No 445
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=48.36 E-value=22 Score=37.39 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (521)
.+|+|+|||.||+..|-.|.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH
Confidence 579999999999999977755
No 446
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=48.32 E-value=38 Score=36.30 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=43.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCCCCCHHH
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLD 405 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~e 405 (521)
..|++.+|.|+|-|+-|.++|+.+... |+ ++++.|+.+ ++ .+ .+.. .-...++.|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~~-----~A~~~G~~v~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----FE-----VAKADGFEVMSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----hH-----HHHHcCCEECCHHH
Confidence 357889999999999999999998764 65 466666532 11 11 1111 111247999
Q ss_pred HhcccCCcEEE
Q 009950 406 AVKVIKPTILI 416 (521)
Q Consensus 406 av~~vkptvLI 416 (521)
+++. +|+++
T Consensus 68 aak~--ADVV~ 76 (335)
T PRK13403 68 AVRT--AQVVQ 76 (335)
T ss_pred HHhc--CCEEE
Confidence 9987 88877
No 447
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=48.21 E-value=40 Score=35.04 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--CCCCcEEEEcCCCCC
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMAS--FNEKPLILALSNPTS 450 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~--~~erPIIFaLSNPt~ 450 (521)
+-|++||+|..|. |+++++.+.. ...-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4699999999763 8999988753 333477776677763
No 448
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=48.04 E-value=21 Score=39.37 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.2
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 009950 331 EHRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (521)
..+|+|+|||.+|+..|-.|.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 3579999999999999988765
No 449
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=48.02 E-value=21 Score=43.39 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
..+|+|+|||.||+..|..|.+. |. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~-----G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARA-----GH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecc
Confidence 47999999999999999988753 53 57788865
No 450
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=47.96 E-value=64 Score=32.52 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.||.|+|+|..|..+|+.+... | .+++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-----g-------~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-----G-------YSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4799999999999999999752 4 256777764
No 451
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=47.74 E-value=53 Score=35.44 Aligned_cols=119 Identities=17% Similarity=0.318 Sum_probs=79.0
Q ss_pred HHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCC
Q 009950 323 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN 402 (521)
Q Consensus 323 k~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~ 402 (521)
|.|..-+.....|+.|=|-.|-|+|..|.-. | .++++ |+- |.+..-|.. -+.-+..+
T Consensus 206 raTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~-----g-------~~Viv-------TEi--DPI~ALQAa--MeG~~V~t 262 (434)
T KOG1370|consen 206 RATDVMIAGKVAVVCGYGDVGKGCAQALKGF-----G-------ARVIV-------TEI--DPICALQAA--MEGYEVTT 262 (434)
T ss_pred hhhhheecccEEEEeccCccchhHHHHHhhc-----C-------cEEEE-------ecc--CchHHHHHH--hhccEeee
Confidence 4566678888999999999999998776432 3 34442 221 223322221 13334579
Q ss_pred HHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCC------------CCCC-CCCCHH-HHhcccCCcEE
Q 009950 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN------------PTSQ-SECTAE-EAYTWSKGRAI 468 (521)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN------------Pt~~-~Ectpe-~A~~wt~G~ai 468 (521)
|.||++. .|+++-+++.-.+++.+-.+.|. +.-||--+-- |... --+.|+ |=|.|.+||.|
T Consensus 263 m~ea~~e--~difVTtTGc~dii~~~H~~~mk---~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~i 337 (434)
T KOG1370|consen 263 LEEAIRE--VDIFVTTTGCKDIITGEHFDQMK---NDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHI 337 (434)
T ss_pred HHHhhhc--CCEEEEccCCcchhhHHHHHhCc---CCcEEeccccccceeehhhccCCcceeeecccccceeeccCCcEE
Confidence 9999998 99999999999999999999996 5666654322 2111 112222 66888999987
Q ss_pred E
Q 009950 469 F 469 (521)
Q Consensus 469 f 469 (521)
+
T Consensus 338 I 338 (434)
T KOG1370|consen 338 I 338 (434)
T ss_pred E
Confidence 6
No 452
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.72 E-value=91 Score=33.36 Aligned_cols=113 Identities=25% Similarity=0.315 Sum_probs=62.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhccc
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v 410 (521)
.++|+|+|.|-.|.++|+.+.+ .|. +++.+|.+- . .+.. ..+..+. .........+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~~- 59 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPEQ- 59 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhcC-
Confidence 4689999999999998887764 353 588888641 1 1111 1111110 01122222343
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCEEe
Q 009950 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (521)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGSPf~pv~~~Gr~~ 485 (521)
+|++|-..+.+ .-.+.+.++..+. -||| |++. . +-++..+.+.+.|--||| +|||-
T Consensus 60 -~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~~----~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 60 -VDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDIQ----L-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred -CCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHHH----H-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 79999887766 4566676666643 3432 3321 1 112112224567888997 78754
No 453
>PRK05868 hypothetical protein; Validated
Probab=47.65 E-value=23 Score=37.15 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.8
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 009950 332 HRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (521)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999987765
No 454
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=47.64 E-value=16 Score=36.32 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=24.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccc
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~ 379 (521)
+||+|+|+||.-+|..|.+. | ..+|.++.+-+...
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSCT
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccCc
Confidence 78999999999999988642 2 24788887765443
No 455
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=47.60 E-value=52 Score=34.34 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=53.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEec-------CCccccCCccCCchhchhhccccCCCCCHH
Q 009950 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS-------KGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 404 (521)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs-------~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ 404 (521)
.||.|+|||+.|.-.+-.|.++ |-+ =.+|.-++ +||...+... ...... ...+-.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-----g~~-----V~~~~R~~~~~~l~~~GL~i~~~~~------~~~~~~--~~~~~~ 62 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-----GHD-----VTLLVRSRRLEALKKKGLRIEDEGG------NFTTPV--VAATDA 62 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-----CCe-----EEEEecHHHHHHHHhCCeEEecCCC------cccccc--ccccCh
Confidence 3899999999999998888775 410 12333333 2665554321 001110 001111
Q ss_pred HHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCc-EEEEcCCCCCCCC
Q 009950 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP-LILALSNPTSQSE 453 (521)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP-IIFaLSNPt~~~E 453 (521)
+... ++|++| ++... -.++++++.+..+.... +|..|-|=-..-|
T Consensus 63 ~~~~--~~Dlvi-v~vKa-~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 63 EALG--PADLVI-VTVKA-YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred hhcC--CCCEEE-EEecc-ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 1111 366665 33322 56778888877544333 5666777665555
No 456
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.60 E-value=22 Score=38.79 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
++++||+|+|.|..|.++|++|...
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~ 30 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAH 30 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHc
Confidence 5678999999999999999998763
No 457
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=47.49 E-value=16 Score=32.80 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=26.1
Q ss_pred CChhhhHHHHHHHHHHHHH---hcCCCeeeeeecCC
Q 009950 253 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDFA 285 (521)
Q Consensus 253 ~~g~~y~~~idefv~av~~---~fGp~~lIq~EDf~ 285 (521)
++.++||.|+|+|+..|.+ .||+...-+||-|-
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~v 62 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFV 62 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEE
Confidence 4679999999999998888 57666666777663
No 458
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=47.43 E-value=36 Score=36.72 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=61.3
Q ss_pred eEEEeCcchHHHH-HHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 009950 333 RFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (521)
Q Consensus 333 riv~~GAGsAg~G-ia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (521)
+|.|+|.|-+|++ +|++|.+. |. ++...|.+--- ..+.|......+- .. .+ .+.++.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~-----G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~~-- 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR-----GY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLDD-- 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC-----CC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCCC--
Confidence 5889999999998 99988763 63 57788864211 1111211110110 01 11 123443
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc-CCcEEEecCCCCCcceeCCEEec
Q 009950 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGSPFDPFEYNGKVFV 486 (521)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt-~G~aifAsGSPf~pv~~~Gr~~~ 486 (521)
+|.+|=-++.+ --++++.++.. ...||+ +.+|. ++++. +.+.|-.||| ||||-.
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT-------nGKTTT 113 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT-------HGKTTT 113 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC-------CChHHH
Confidence 88888555555 45677777765 356775 22333 22332 3467778897 777543
No 459
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=47.34 E-value=73 Score=32.40 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=48.3
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc-ccCCccCCch------hchhhcc-ccC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI-VSSRKDSLQH------FKKPWAH-EHE 398 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi-~~~R~~~l~~------~k~~fa~-~~~ 398 (521)
+++..+|+|.|| |-.|..+++.|+.. |. +++++|+..-- ...+...+.. .+..|.. +..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~-----G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSK-----GY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 466789999996 88888888888763 53 57777764210 0000000100 0111211 222
Q ss_pred CCCCHHHHhcccCCcEEEEccCC
Q 009950 399 PVNNLLDAVKVIKPTILIGSSGV 421 (521)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~ 421 (521)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 33467888888889999988775
No 460
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=47.31 E-value=25 Score=39.26 Aligned_cols=80 Identities=10% Similarity=0.262 Sum_probs=48.4
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCC
Q 009950 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNN 402 (521)
Q Consensus 326 g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~ 402 (521)
...|...|++|+|-++-.+|+++.|.+.| |+. +..+++. .....+.+.+.-+.+... .++...
T Consensus 300 ~~~l~Gkrv~I~gd~~~a~~l~~~L~~EL----Gm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~e 365 (513)
T CHL00076 300 CQNLTGKKAVVFGDATHAASMTKILAREM----GIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTE 365 (513)
T ss_pred ccccCCCEEEEEcCchHHHHHHHHHHHhC----CCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHH
Confidence 36788899999999999999999997664 873 2233321 010000011111111110 122245
Q ss_pred HHHHhcccCCcEEEEcc
Q 009950 403 LLDAVKVIKPTILIGSS 419 (521)
Q Consensus 403 L~eav~~vkptvLIG~S 419 (521)
+.+.|+..+||++||.|
T Consensus 366 i~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHHhcCCCEEEECc
Confidence 78889999999999976
No 461
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=47.09 E-value=34 Score=35.91 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=51.7
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCcc
Q 009950 305 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 384 (521)
Q Consensus 305 DDiQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~ 384 (521)
|+..+.-+=-+|.-+.+.........+.+++|+|||+.|+..+.+... .|. ++|+++|.. ..|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCCC----HHH--
Confidence 344444444444443342222222333399999999999987333322 364 689988873 222
Q ss_pred CCchhchhhccc--cCCCC-CHHHHh----cccCCcEEEEccCCC
Q 009950 385 SLQHFKKPWAHE--HEPVN-NLLDAV----KVIKPTILIGSSGVG 422 (521)
Q Consensus 385 ~l~~~k~~fa~~--~~~~~-~L~eav----~~vkptvLIG~S~~~ 422 (521)
|...++.++-+ ..... ...+.+ .+...|+.|=+|+.+
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 33333333322 11111 233223 223689999999833
No 462
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.04 E-value=70 Score=34.46 Aligned_cols=112 Identities=14% Similarity=0.214 Sum_probs=59.6
Q ss_pred ccc-ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHh
Q 009950 329 LAE-HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (521)
Q Consensus 329 L~d-~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav 407 (521)
++. +||+|+|.|-.|++.+++|... .| .-++...|.+=. ....+.|.. ...+.... -+ .+.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~-~~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WN-LEWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CC-hHHh
Confidence 344 6899999999999999998763 22 125778886421 000011211 11111110 01 1234
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEecCC
Q 009950 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 473 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ectpe~A~~wt~G~aifAsGS 473 (521)
+. +|.+|=-++.+ .-.+++.++.++ .-||+ +.+|. ++.+.+.+.|-.|||
T Consensus 67 ~~--~d~vV~SpgI~-~~~p~~~~a~~~--gi~i~-------~~~el----~~~~~~~~~I~VTGT 116 (438)
T PRK04663 67 LE--ADLVVTNPGIA-LATPEIQQVLAA--GIPVV-------GDIEL----FAWAVDKPVIAITGS 116 (438)
T ss_pred cc--CCEEEECCCCC-CCCHHHHHHHHC--CCcEE-------EHHHH----HHhhcCCCEEEEeCC
Confidence 43 78777544554 346677666553 46774 22332 233345578888997
No 463
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=46.86 E-value=2.2e+02 Score=33.18 Aligned_cols=101 Identities=15% Similarity=0.028 Sum_probs=57.1
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC--------CCCCHHHHhcccCCcEEEecCCCCCcce
Q 009950 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDPFE 479 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------~Ectpe~A~~wt~G~aifAsGSPf~pv~ 479 (521)
+.++|+.+|..++.. +.-.-+.+...+-+|=|.+=.-||... .+-|-+++..+.. + |+..-=..||.
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~-~--~~~~~gk~pv~ 487 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTV-A--LAKKQGKTPIV 487 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHH-H--HHHHcCCceEE
Confidence 446899999877743 544444444445566688888898742 2333333333211 0 11111234555
Q ss_pred eCCEEeccccccceeechhhhHHHHHhCCCccCHHHHH
Q 009950 480 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLL 517 (521)
Q Consensus 480 ~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~ 517 (521)
. .+.||.+=|-+.+|-+-=++.+..-- ++.+-+-
T Consensus 488 v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID 521 (708)
T PRK11154 488 V---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHID 521 (708)
T ss_pred E---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHH
Confidence 4 36888888888888776666555432 3444333
No 464
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=46.77 E-value=17 Score=44.01 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 327 ~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
++|.+.+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 568889999999999999999999886 75 7899999874
No 465
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=46.74 E-value=25 Score=38.66 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=26.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
...+++|+|+|.||+..|..|... |. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~-----g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA-----GH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-----CC-------eEEEEecC
Confidence 347999999999999999888652 53 57888764
No 466
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.46 E-value=51 Score=33.40 Aligned_cols=91 Identities=18% Similarity=0.362 Sum_probs=58.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHh
Q 009950 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (521)
Q Consensus 328 ~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav 407 (521)
..+-.++||+|+=--|..+|++|.++ .++.++|-+- +.+.|....-....+.--+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~~-------------~~vtv~Di~p------------~~r~~lp~~v~Fr~~~~~~ 96 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSKA-------------DKVTVVDIHP------------FMRGFLPNNVKFRNLLKFI 96 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhccc-------------ceEEEecCCH------------HHHhcCCCCccHhhhcCCC
Confidence 34557899999999999999888553 5788888642 1112221111111111112
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 009950 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (521)
.+ .-|++|-+++.|| .++|.++.. .|=+|-.-||++
T Consensus 97 ~G-~~DlivDlTGlGG-~~Pe~L~~f-----np~vfiVEdP~g 132 (254)
T COG4017 97 RG-EVDLIVDLTGLGG-IEPEFLAKF-----NPKVFIVEDPKG 132 (254)
T ss_pred CC-ceeEEEeccccCC-CCHHHHhcc-----CCceEEEECCCC
Confidence 21 2488899999876 788888766 467788889885
No 467
>PRK06126 hypothetical protein; Provisional
Probab=46.45 E-value=26 Score=38.58 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=27.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
.+.+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 45789999999999999988765 365 467777653
No 468
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=46.33 E-value=18 Score=35.92 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.8
Q ss_pred CCcCCCCCHHHHhh
Q 009950 61 HNKGLAFTEKERDA 74 (521)
Q Consensus 61 ~NKG~aFt~~ER~~ 74 (521)
+|++++||.++|.+
T Consensus 66 L~~dLgFs~edR~e 79 (197)
T COG0529 66 LNRDLGFSREDRIE 79 (197)
T ss_pred ccCCCCCChHHHHH
Confidence 79999999999965
No 469
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=46.13 E-value=35 Score=38.31 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHH
Q 009950 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 319 l~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~ 352 (521)
+.++.-...-|...|+.++|-..-.+|+++.|.+
T Consensus 351 ~dam~d~~~~l~GKrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 351 VDAMTDSHAWLHGKRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred HHHHHHHHHHhcCceEEEECCHHHHHHHHHHHHH
Confidence 3343334456788999999999999999999975
No 470
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=46.03 E-value=29 Score=35.52 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=29.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCcc
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (521)
...+|+|+|+|-+|+.+|-.|.+. |. ++.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 357899999999999999888764 52 68888876653
No 471
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=46.03 E-value=29 Score=31.08 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=50.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCc-cCCch--hc-hhhccccCCCCCHHHHhcc
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-DSLQH--FK-KPWAHEHEPVNNLLDAVKV 409 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~-~~l~~--~k-~~fa~~~~~~~~L~eav~~ 409 (521)
|+|+|||+.|.-+|-.|.++ | .++.++++.. -.+... ..+.- .. ....+.........+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADA-- 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHH--
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhcc--
Confidence 78999999999999888663 4 4688888876 111110 01100 00 00000000111122223
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcCCCCc-EEEEcCCC
Q 009950 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKP-LILALSNP 448 (521)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP-IIFaLSNP 448 (521)
-++|++| ++... .=++++++.++.+...- .|+.+-|=
T Consensus 66 ~~~D~vi-v~vKa-~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 66 GPYDLVI-VAVKA-YQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp STESEEE-E-SSG-GGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred CCCcEEE-EEecc-cchHHHHHHHhhccCCCcEEEEEeCC
Confidence 3488888 44432 23577888877554442 45556664
No 472
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=45.86 E-value=24 Score=38.88 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~ 352 (521)
.+.+|+|+|||.+|+..|..|.+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35689999999999999988865
No 473
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=45.72 E-value=28 Score=37.33 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
+-.++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 35699999999999999988663 4 5789999863
No 474
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=45.67 E-value=23 Score=41.13 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=58.1
Q ss_pred cccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC--------CCCCCHHHHhcccCCcEEEecCCCCCcce
Q 009950 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFDPFE 479 (521)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~~Ectpe~A~~wt~G~aifAsGSPf~pv~ 479 (521)
+.++|+++|..++. .++-.-+.+..++-+|=|.+=..||.. ..+-|.++..++... |+..-=..||.
T Consensus 416 ~~~~~~~ilasNTS--sl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~pv~ 490 (715)
T PRK11730 416 QKVREDTILASNTS--TISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKTPIV 490 (715)
T ss_pred hhCCCCcEEEEcCC--CCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCceEE
Confidence 45679999988774 355444444444555668888999863 233344444443210 12211245665
Q ss_pred eCCEEeccccccceeechhhhHHHHHhCCCccCHHHHHh
Q 009950 480 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLA 518 (521)
Q Consensus 480 ~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~a 518 (521)
.+ +.||-.=|-..+|-+--++.+...- .+.+.+-+
T Consensus 491 v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~ 525 (715)
T PRK11730 491 VN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDK 525 (715)
T ss_pred ec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 52 7899999988888765554443332 45444443
No 475
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=45.59 E-value=37 Score=32.56 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=24.6
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.++..+++|.|| |..|..+++.+++ +|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 356678999998 6666666666654 353 57777764
No 476
>PRK07190 hypothetical protein; Provisional
Probab=45.59 E-value=27 Score=38.47 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=25.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCCC
Confidence 3579999999999998876644 365 467777753
No 477
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=45.36 E-value=21 Score=39.05 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=27.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+||||+|+|-+|+..|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999999887642 1 1358888875
No 478
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=44.98 E-value=31 Score=29.51 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=51.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkp 412 (521)
||.|+|+|..|......+.... .+ .+=..++|++. +......+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~---~~------~~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS---PD------FEVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT---TT------EEEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhcC---CC------cEEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 8999999999777655554320 11 12244666631 112222222221 245789999998789
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009950 413 TILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (521)
|+++ +++.. ....++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9988 44434 466677766654333 5543
No 479
>PLN02852 ferredoxin-NADP+ reductase
Probab=44.98 E-value=15 Score=40.97 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=30.8
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 325 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 325 ~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
...+-...||+|+|||.||+..|..|.+.. .| -+|.++|+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 344455679999999999999999987531 23 368888876
No 480
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=44.82 E-value=1.4e+02 Score=31.20 Aligned_cols=136 Identities=18% Similarity=0.278 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeccC-CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcc
Q 009950 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD-IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 340 (521)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnDD-iQGTaaV~LAgll~Alk~~g~~L~d~riv~~GAG 340 (521)
+.+++..+.. | .++++ +--. .+.+.+.+.+| .++||+|=+ -..=-+=+|+=++.-.+..| .|++.||.++|-.
T Consensus 84 l~Dt~~vls~-y-~D~iv-~R~~-~~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~ 157 (304)
T TIGR00658 84 IKDTARVLSR-Y-VDGIM-ARVY-KHEDVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDG 157 (304)
T ss_pred HHHHHHHHHH-h-CCEEE-EECC-ChHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCC
Confidence 4445544444 5 44332 3322 23344445554 468999942 22223456777776666666 4999999999986
Q ss_pred hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-c---CCCCCHHHHhcccCCcEEE
Q 009950 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILI 416 (521)
Q Consensus 341 sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~---~~~~~L~eav~~vkptvLI 416 (521)
. .+++-++.++.+ .|+ ++.++-.+++.-.. ...+.-+.+++. . ....++.+++++ +||+.
T Consensus 158 ~---~v~~Sl~~~l~~-~g~-------~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy 221 (304)
T TIGR00658 158 N---NVCNSLMLAGAK-LGM-------DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIY 221 (304)
T ss_pred C---chHHHHHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 3 478888777765 464 68888877763321 111112233332 1 123689999998 99998
Q ss_pred Ecc
Q 009950 417 GSS 419 (521)
Q Consensus 417 G~S 419 (521)
-.+
T Consensus 222 ~~~ 224 (304)
T TIGR00658 222 TDV 224 (304)
T ss_pred EcC
Confidence 764
No 481
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=44.67 E-value=23 Score=36.90 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 009950 333 RFLFLGAGEAGTGIAELIAL 352 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (521)
+|+|+|||.+|...|-.|.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc
Confidence 58999999999999988755
No 482
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=44.22 E-value=47 Score=37.24 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=62.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-ccC---CCCCHHHHhc
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHE---PVNNLLDAVK 408 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~-~~~---~~~~L~eav~ 408 (521)
+|-|+|-|..|.++|.-|+.. |. ++.+.|+. .++ ..+....++. ... ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 689999999999999999764 53 57777763 222 2222222222 111 3468999987
Q ss_pred cc-CCcEEEEccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 009950 409 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (521)
Q Consensus 409 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (521)
.+ +|+++| ++-..+.-.++|+..+... .+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 64 588888 4444556667776554433 4677999999854
No 483
>PRK08265 short chain dehydrogenase; Provisional
Probab=44.20 E-value=25 Score=34.34 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=23.4
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++++++++|.|| |..|..+|+.++ + .|. +++++|++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~----~-~G~-------~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALV----A-AGA-------RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 477889999997 444444555554 3 363 68888774
No 484
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=44.20 E-value=27 Score=38.36 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCC
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (521)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 6889999999999999999888653 25788877654
No 485
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=44.12 E-value=85 Score=33.44 Aligned_cols=107 Identities=12% Similarity=0.160 Sum_probs=58.6
Q ss_pred hCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCC--ccCCch-h-chhhcc-ccC
Q 009950 325 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--KDSLQH-F-KKPWAH-EHE 398 (521)
Q Consensus 325 ~g~~L~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R--~~~l~~-~-k~~fa~-~~~ 398 (521)
.++.-+++||+|.|| |-.|..+++.|++. | -+++.+++..--.... ...+.. . ...+.. +..
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~-----G-------~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 121 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRR-----G-------YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVT 121 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHC-----C-------CEEEEEEechhhccccchhhHHhhhcCCceEEEeeCC
Confidence 356677889999997 88888888888652 5 2577777653100000 000000 0 011111 222
Q ss_pred CCCCHHHHhccc--CCcEEEEccCCC-C----CC------CHHHHHHHHcCCCCcEEE
Q 009950 399 PVNNLLDAVKVI--KPTILIGSSGVG-R----TF------TKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 399 ~~~~L~eav~~v--kptvLIG~S~~~-g----~F------t~evv~~Ma~~~erPIIF 443 (521)
+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+
T Consensus 122 d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 122 DADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 234677788765 699998554321 1 11 345677776555455776
No 486
>PRK09897 hypothetical protein; Provisional
Probab=44.03 E-value=30 Score=39.01 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+|+|+|||++|+.+|..|+.. + ..-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999762 2 12369999984
No 487
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=44.03 E-value=24 Score=34.31 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred CcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+++.++||.||.+ .|..+|+.+++ .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~-----~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLA-----EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 36778999999743 44445555543 363 58888874
No 488
>PRK13748 putative mercuric reductase; Provisional
Probab=43.92 E-value=25 Score=38.70 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 56799999999999999888764 5 478999975
No 489
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=43.90 E-value=23 Score=38.40 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=20.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+|+|+|||+||+-.|-.+++. | .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~-----g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEK-----G-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHT-----T---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CCEEEEeCC
Confidence 589999999999998888542 4 468888876
No 490
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=43.77 E-value=45 Score=32.18 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=24.2
Q ss_pred CCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.++++.++||.||. -.|..+|+.+++ .|. +++++|+.
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~-----~G~-------~v~~~~r~ 41 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAA-----EGA-------RVVLVDRS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHH-----CCC-------EEEEEeCc
Confidence 34778899999974 345555555543 353 58888875
No 491
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.77 E-value=25 Score=38.15 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=57.3
Q ss_pred HHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc----
Q 009950 320 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---- 395 (521)
Q Consensus 320 ~Alk~~g~~L~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~---- 395 (521)
.++.-....|...|+.|+|-..-.+++++.|.+ .|+.... .+.+. ......+.-+.+..
T Consensus 292 ~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v~~-----~~~~~-------~~~~~~~~~~~~l~~~~~ 354 (435)
T cd01974 292 DAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEPVH-----VLTGN-------GGKRFEKEMQALLDASPY 354 (435)
T ss_pred HHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEEEE-----EEeCC-------CCHHHHHHHHHHHhhcCC
Confidence 333334456788999999988899999999874 3773211 11111 11101111111111
Q ss_pred -------ccCCCCCHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 009950 396 -------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (521)
Q Consensus 396 -------~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (521)
...+...+++.++..+||++||-|-. +.+++...-|.| ..+.|.
T Consensus 355 ~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~~---------~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 355 GAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTYG---------KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCcEEEECCCHHHHHHHHhhcCCCEEEECccH---------HHHHHHhCCCEE-EeeCCc
Confidence 11223467888899999999997741 233332356753 566665
No 492
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=43.51 E-value=27 Score=33.96 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=24.2
Q ss_pred CcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
+|++.+++|.||. -.|.++|+.+++ .|. +++++|++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~-----~G~-------~V~~~~r~ 38 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVA-----EGA-------RVAVLDKS 38 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 3678899999974 356666666654 353 57888764
No 493
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=43.49 E-value=1.5e+02 Score=30.20 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.2
Q ss_pred CHHHHhcccCCcEEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009950 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (521)
++.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 265 ~~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 265 DVPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred CHHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 35666766 89999887644 58889999999 5889987
No 494
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=43.36 E-value=1.7e+02 Score=31.24 Aligned_cols=138 Identities=13% Similarity=0.184 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceecc-CCCchHHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 009950 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 339 (521)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alk~~g-~~L~d~riv~~GA 339 (521)
+.+.+..+.. | .++++ +--. .+.+.+.+.+| .++||.|= +-..=-+=+||=++.-.+..| ++|++.+|.++|-
T Consensus 90 l~Dtarvls~-y-~D~iv-iR~~-~~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD 164 (334)
T PRK12562 90 IKDTARVLGR-M-YDGIQ-YRGH-GQEVVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGD 164 (334)
T ss_pred HHHHHHHHHH-h-CCEEE-EECC-chHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECC
Confidence 4445555444 5 33333 3333 23344445555 47999993 212223446777777766666 4699999999998
Q ss_pred chHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-CC---CCCHHHHhcccCCcEE
Q 009950 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP---VNNLLDAVKVIKPTIL 415 (521)
Q Consensus 340 GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~~---~~~L~eav~~vkptvL 415 (521)
+.- .+++-++.++.+ .|+ ++.++-.+|+.-.. + .-+.-+.+++.. .. ..++.||+++ +||+
T Consensus 165 ~~~--~v~~S~~~~~~~-~G~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 229 (334)
T PRK12562 165 ARN--NMGNSMLEAAAL-TGL-------DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFI 229 (334)
T ss_pred CCC--CHHHHHHHHHHH-cCC-------EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 742 367777666655 464 68888887763221 1 111112333321 11 3689999998 9999
Q ss_pred EEcc
Q 009950 416 IGSS 419 (521)
Q Consensus 416 IG~S 419 (521)
.-.+
T Consensus 230 yt~~ 233 (334)
T PRK12562 230 YTDV 233 (334)
T ss_pred EEcC
Confidence 9875
No 495
>PRK08339 short chain dehydrogenase; Provisional
Probab=43.26 E-value=42 Score=33.04 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=25.5
Q ss_pred CCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+|+++++||.||+ ..|..+|+.+++ +|. +++++|++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~-----~G~-------~V~~~~r~ 41 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLAR-----AGA-------DVILLSRN 41 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 35778899999985 466666666654 353 58888864
No 496
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=43.19 E-value=66 Score=38.25 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=65.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH---HHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc--cCCCCCHH
Q 009950 330 AEHRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLL 404 (521)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~---~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~--~~~~~~L~ 404 (521)
...+|.++|-|..|.+++++|.+. +.++.|+.. +=.-++||++.+.+.+.-++......|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 346899999999999999999763 333335421 123467999988776532222222223221 12234567
Q ss_pred HHhcccCCc--EEEEccCCCCCCCHHHHHHHHcCCCCcEEE
Q 009950 405 DAVKVIKPT--ILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (521)
Q Consensus 405 eav~~vkpt--vLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (521)
|.+....++ |+|=+++.. -....+.+++. +...+|-
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVt 570 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVIS 570 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEc
Confidence 777765664 999888733 35566777776 3566664
No 497
>PRK07478 short chain dehydrogenase; Provisional
Probab=43.12 E-value=62 Score=31.14 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=23.6
Q ss_pred CcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 328 TLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 328 ~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
++++.+++|.||+ ..|..+|+.+++ .|. +++++++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~-----~G~-------~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAR-----EGA-------KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4677899999975 345556665543 353 58888764
No 498
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=42.69 E-value=23 Score=41.11 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=21.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 009950 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (521)
Q Consensus 329 L~d~riv~~GAGsAg~Gia~ll~~~ 353 (521)
-+..+|+|+|||.||+..|-.|.+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~ 103 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK 103 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc
Confidence 4567899999999999999888763
No 499
>PRK06523 short chain dehydrogenase; Provisional
Probab=42.68 E-value=80 Score=30.43 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=24.4
Q ss_pred CCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecC
Q 009950 327 GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (521)
Q Consensus 327 ~~L~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (521)
.+++++++||.||. ..|..+|+.+++ .|. +++++++.
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~-----~G~-------~v~~~~r~ 42 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLE-----AGA-------RVVTTARS 42 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 46888999999973 445555555543 353 58888774
No 500
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=42.58 E-value=39 Score=28.82 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=51.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-ccCCCCCHHHHhcccCC
Q 009950 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKP 412 (521)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~-~~~~~~~L~eav~~vkp 412 (521)
|||+|.|..|..+++.|.+. + .++.++|++--... .+.+...++.. +......|.++ .--++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d~~~~~----~~~~~~~~~i~gd~~~~~~l~~a-~i~~a 63 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRDPERVE----ELREEGVEVIYGDATDPEVLERA-GIEKA 63 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESSHHHHH----HHHHTTSEEEES-TTSHHHHHHT-TGGCE
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECCcHHHH----HHHhcccccccccchhhhHHhhc-Ccccc
Confidence 78999999999999988652 2 47999998622111 11111111111 11122345543 44468
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcCCC-CcEEEEcCCCC
Q 009950 413 TILIGSSGVGRTFTKEVIEAMASFNE-KPLILALSNPT 449 (521)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~~e-rPIIFaLSNPt 449 (521)
+.+|-++... .-+-.+.....+.++ .+||.-+.||.
T Consensus 64 ~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 64 DAVVILTDDD-EENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 8888776532 333333333334345 56666565554
Done!