BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009951
         (521 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
           From E.Coli
          Length = 451

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 295 KLLLVLSI-----YLTVTSILSWSFVPRFLK----LMIQLSSQTNELYQLAAVAFCLLSA 345
           KLL  ++I     YL    IL WS  P +LK      +  SS    LY+ A +   LL  
Sbjct: 252 KLLWYIAIANVFVYLLRYGILDWS--PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG 309

Query: 346 WCSDKL 351
           W SDK+
Sbjct: 310 WMSDKV 315


>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
           From Lactobacillus Confusus At 2.2 Angstroms
           Resolution-an Example Of Strong Asymmetry Between
           Subunits
 pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
           From Lactobacillus Confusus At 2.2 Angstroms
           Resolution-an Example Of Strong Asymmetry Between
           Subunits
 pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
           From Lactobacillus Confusus At 2.2 Angstroms
           Resolution-an Example Of Strong Asymmetry Between
           Subunits
 pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
           From Lactobacillus Confusus At 2.2 Angstroms
           Resolution-an Example Of Strong Asymmetry Between
           Subunits
          Length = 309

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 209 LKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLI---L 265
           LKF S +VQ  G  L E  F G  + +S+   V+  L +  +    H  +  GTL+    
Sbjct: 95  LKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGTGTLLDTAR 154

Query: 266 QDCAVGLLFALLP 278
              AVG  F L P
Sbjct: 155 MQRAVGEAFDLDP 167


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,475,035
Number of Sequences: 62578
Number of extensions: 381361
Number of successful extensions: 721
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 2
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)